Query 043978
Match_columns 683
No_of_seqs 541 out of 4556
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 17:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1E-65 3.4E-70 583.3 42.5 579 2-632 47-717 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-63 4.8E-68 565.7 40.4 576 8-630 101-738 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2E-56 6.7E-61 503.2 47.8 588 10-635 7-625 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-56 6.5E-61 503.3 44.8 572 6-618 24-634 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.4E-51 4.7E-56 457.6 41.6 514 61-618 34-571 (606)
6 3t6q_A CD180 antigen; protein- 100.0 7.3E-51 2.5E-55 451.8 41.1 508 36-583 34-562 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-50 6.3E-55 448.5 38.8 513 35-618 32-569 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-50 5.7E-55 448.8 33.6 521 37-633 13-559 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-50 1.1E-54 460.9 36.0 524 7-617 24-570 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 5.2E-48 1.8E-52 442.6 35.8 509 60-632 24-560 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 2.1E-45 7.2E-50 405.2 35.8 482 86-614 9-538 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 6.1E-45 2.1E-49 399.3 33.1 478 35-618 26-522 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1.6E-44 5.4E-49 398.2 35.7 488 35-585 28-535 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 9.7E-45 3.3E-49 397.7 30.3 491 62-632 7-510 (549)
15 4eco_A Uncharacterized protein 100.0 1.3E-45 4.5E-50 408.6 19.1 469 2-581 77-600 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-43 3.9E-48 386.2 26.6 471 63-618 3-493 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 2E-41 6.8E-46 378.8 41.1 512 61-618 53-591 (635)
18 4eco_A Uncharacterized protein 100.0 3.1E-44 1E-48 397.7 17.3 465 60-608 81-601 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 1.8E-43 6.1E-48 397.0 22.6 447 2-510 319-841 (876)
20 4ecn_A Leucine-rich repeat pro 100.0 1.1E-42 3.9E-47 390.5 27.1 441 136-635 323-867 (876)
21 4g8a_A TOLL-like receptor 4; l 100.0 4.3E-41 1.5E-45 376.1 35.5 511 87-633 34-581 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-42 5.3E-47 377.3 22.7 463 10-583 3-483 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-40 5E-45 364.6 27.0 447 112-615 53-518 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5E-39 1.7E-43 352.4 28.0 456 110-632 30-510 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 6.8E-39 2.3E-43 339.1 24.2 415 110-631 10-428 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 1.1E-38 3.8E-43 337.5 23.6 420 33-584 9-432 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 1.8E-37 6.2E-42 331.6 32.3 391 114-611 13-412 (455)
28 3v47_A TOLL-like receptor 5B a 100.0 4.5E-36 1.5E-40 320.8 28.6 394 63-585 13-412 (455)
29 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-36 1.1E-40 319.0 24.9 399 129-661 36-435 (457)
30 1o6v_A Internalin A; bacterial 100.0 9.6E-34 3.3E-38 302.8 36.3 346 158-582 44-389 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 6.1E-34 2.1E-38 301.4 31.6 361 30-494 37-397 (457)
32 1o6v_A Internalin A; bacterial 100.0 1.8E-33 6.3E-38 300.6 31.5 346 206-611 44-391 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 8.4E-33 2.9E-37 297.0 29.2 346 187-611 14-360 (477)
34 3o6n_A APL1; leucine-rich repe 100.0 9.9E-32 3.4E-36 280.6 27.9 138 471-618 226-363 (390)
35 2id5_A Lingo-1, leucine rich r 100.0 1.1E-31 3.8E-36 288.3 27.4 276 35-316 32-309 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 8E-32 2.7E-36 281.3 25.6 310 207-583 44-354 (390)
37 4fmz_A Internalin; leucine ric 100.0 5.3E-31 1.8E-35 270.7 29.6 130 467-607 217-346 (347)
38 4fmz_A Internalin; leucine ric 100.0 4.4E-31 1.5E-35 271.3 28.8 169 448-632 178-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 2.3E-31 7.9E-36 293.0 24.8 146 428-581 213-358 (597)
40 3oja_B Anopheles plasmodium-re 100.0 9.7E-31 3.3E-35 288.0 29.3 110 184-293 51-160 (597)
41 1xku_A Decorin; proteoglycan, 100.0 1.1E-28 3.6E-33 251.4 30.3 161 465-630 165-330 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 2E-28 6.9E-33 249.4 27.6 127 209-352 34-160 (332)
43 1xku_A Decorin; proteoglycan, 100.0 2.6E-28 9E-33 248.5 27.6 289 36-350 32-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-28 7.3E-33 249.2 26.6 251 334-630 73-331 (332)
45 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-30 8.5E-35 260.5 10.8 247 36-291 51-302 (313)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-31 3.7E-36 287.4 -1.0 393 185-608 4-441 (461)
47 1z7x_W Ribonuclease inhibitor; 100.0 4.4E-32 1.5E-36 290.4 -9.0 63 84-149 3-69 (461)
48 1ogq_A PGIP-2, polygalacturona 100.0 4.6E-29 1.6E-33 251.3 13.4 248 60-314 50-302 (313)
49 3ogk_B Coronatine-insensitive 99.9 8.3E-30 2.8E-34 281.9 -5.5 411 58-578 110-548 (592)
50 2z66_A Variable lymphocyte rec 99.9 7E-26 2.4E-30 228.0 21.7 227 402-631 49-286 (306)
51 2z66_A Variable lymphocyte rec 99.9 6.8E-25 2.3E-29 220.7 24.0 248 38-293 10-261 (306)
52 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-24 9.3E-29 234.0 29.6 265 209-565 41-305 (622)
53 3ogk_B Coronatine-insensitive 99.9 2.2E-28 7.4E-33 270.5 -3.1 142 467-609 374-528 (592)
54 2z80_A TOLL-like receptor 2, v 99.9 1.5E-25 5E-30 230.3 18.2 282 31-320 27-318 (353)
55 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-24 9.9E-29 233.8 29.1 261 257-611 41-301 (622)
56 4fcg_A Uncharacterized protein 99.9 8.2E-26 2.8E-30 228.8 15.7 225 34-292 80-313 (328)
57 2z80_A TOLL-like receptor 2, v 99.9 8.2E-26 2.8E-30 232.2 15.8 251 36-293 53-314 (353)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-24 4.6E-29 216.1 23.5 221 408-632 14-238 (285)
59 3zyj_A Leucine-rich repeat-con 99.9 1.9E-24 6.6E-29 228.9 25.9 246 37-292 45-291 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 1.3E-24 4.4E-29 231.1 24.3 248 37-294 56-304 (452)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-24 4.6E-29 216.0 22.2 220 405-629 32-258 (285)
62 3zyj_A Leucine-rich repeat-con 99.9 1.3E-24 4.5E-29 230.1 22.9 246 10-269 46-292 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 2.2E-24 7.5E-29 229.3 24.4 246 61-316 55-303 (452)
64 4fcg_A Uncharacterized protein 99.9 6.1E-25 2.1E-29 222.4 16.4 234 59-316 80-314 (328)
65 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-26 1.1E-30 231.3 5.8 153 470-629 119-272 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-26 2E-30 229.3 3.9 106 469-579 167-273 (317)
67 1wwl_A Monocyte differentiatio 99.9 2.1E-25 7E-30 224.7 4.6 241 366-634 42-311 (312)
68 2o6q_A Variable lymphocyte rec 99.9 4.1E-23 1.4E-27 203.3 20.9 204 405-611 16-222 (270)
69 3oja_A Leucine-rich immune mol 99.9 1.7E-24 5.7E-29 231.2 11.4 150 471-627 120-270 (487)
70 2p1m_B Transport inhibitor res 99.9 1.7E-27 5.7E-32 263.6 -12.8 429 139-607 46-519 (594)
71 2p1m_B Transport inhibitor res 99.9 9.4E-27 3.2E-31 257.6 -8.9 106 63-170 46-166 (594)
72 2o6q_A Variable lymphocyte rec 99.9 3.9E-22 1.3E-26 196.3 23.6 203 427-633 17-219 (270)
73 1wwl_A Monocyte differentiatio 99.9 4.9E-25 1.7E-29 221.9 2.5 40 110-150 94-135 (312)
74 1p9a_G Platelet glycoprotein I 99.9 2.9E-22 9.8E-27 198.8 21.6 208 402-616 7-217 (290)
75 2z62_A TOLL-like receptor 4, v 99.9 1.1E-22 3.6E-27 201.3 18.0 220 371-611 11-241 (276)
76 3oja_A Leucine-rich immune mol 99.9 3.4E-23 1.2E-27 221.1 14.9 239 336-602 31-270 (487)
77 3rfs_A Internalin B, repeat mo 99.9 1.8E-23 6.1E-28 206.0 11.0 205 405-620 41-247 (272)
78 1p9a_G Platelet glycoprotein I 99.9 7.4E-22 2.5E-26 195.8 18.2 202 424-633 8-209 (290)
79 2z62_A TOLL-like receptor 4, v 99.9 3.8E-21 1.3E-25 190.1 21.3 203 136-351 28-236 (276)
80 3m19_A Variable lymphocyte rec 99.9 4.7E-21 1.6E-25 186.3 21.0 177 430-609 18-194 (251)
81 3rfs_A Internalin B, repeat mo 99.9 7.1E-22 2.4E-26 194.6 13.9 228 33-279 17-245 (272)
82 2ca6_A RAN GTPase-activating p 99.8 1.4E-22 4.9E-27 210.8 1.7 156 471-628 159-339 (386)
83 1h6u_A Internalin H; cell adhe 99.8 1.9E-20 6.4E-25 187.7 16.9 191 402-607 38-230 (308)
84 1h6u_A Internalin H; cell adhe 99.8 7.4E-20 2.5E-24 183.4 21.1 193 337-582 39-231 (308)
85 3goz_A Leucine-rich repeat-con 99.8 4.3E-22 1.5E-26 205.0 4.8 88 472-559 197-299 (362)
86 3m19_A Variable lymphocyte rec 99.8 8.3E-20 2.8E-24 177.5 20.8 178 405-583 14-194 (251)
87 2ca6_A RAN GTPase-activating p 99.8 2.6E-22 8.9E-27 208.8 2.0 233 403-635 30-319 (386)
88 4glp_A Monocyte differentiatio 99.8 3.6E-21 1.2E-25 193.5 10.2 195 405-607 91-307 (310)
89 2ast_B S-phase kinase-associat 99.8 6.1E-21 2.1E-25 194.7 9.4 228 405-640 70-314 (336)
90 2o6s_A Variable lymphocyte rec 99.8 4.5E-20 1.5E-24 173.9 13.8 178 431-619 12-189 (208)
91 3goz_A Leucine-rich repeat-con 99.8 2.6E-21 9E-26 199.0 4.8 257 40-317 3-298 (362)
92 2ast_B S-phase kinase-associat 99.8 1.5E-21 5E-26 199.3 2.6 222 37-266 49-282 (336)
93 2xwt_C Thyrotropin receptor; s 99.8 2.6E-19 9E-24 172.6 17.2 196 209-436 32-236 (239)
94 4glp_A Monocyte differentiatio 99.8 6.4E-20 2.2E-24 184.4 11.8 201 136-353 91-308 (310)
95 2xwt_C Thyrotropin receptor; s 99.8 1.9E-19 6.6E-24 173.6 14.4 132 182-316 78-218 (239)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-18 7E-23 163.5 16.2 163 451-618 15-177 (220)
97 3cvr_A Invasion plasmid antige 99.8 4E-18 1.4E-22 183.1 18.9 189 406-620 60-255 (571)
98 2v9t_B SLIT homolog 2 protein 99.8 3.9E-18 1.3E-22 161.6 15.6 142 471-615 32-173 (220)
99 2v9t_B SLIT homolog 2 protein 99.8 4.2E-18 1.4E-22 161.3 15.8 152 429-581 14-165 (220)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 3.8E-18 1.3E-22 161.6 15.4 152 431-583 16-168 (220)
101 2o6s_A Variable lymphocyte rec 99.8 6.1E-18 2.1E-22 159.2 15.9 186 408-608 10-199 (208)
102 2xot_A Amphoterin-induced prot 99.8 5E-18 1.7E-22 174.3 16.1 180 429-611 21-206 (361)
103 2xot_A Amphoterin-induced prot 99.8 2.1E-18 7.2E-23 177.1 13.2 174 407-582 20-203 (361)
104 4ay9_X Follicle-stimulating ho 99.8 1.4E-18 4.8E-23 177.7 11.3 217 408-628 12-235 (350)
105 4ay9_X Follicle-stimulating ho 99.8 2.2E-17 7.6E-22 168.7 20.2 240 114-415 12-256 (350)
106 3cvr_A Invasion plasmid antige 99.8 1.2E-17 4.2E-22 179.3 18.8 157 407-583 82-245 (571)
107 1h6t_A Internalin B; cell adhe 99.8 1.3E-17 4.5E-22 165.4 17.5 194 406-615 25-220 (291)
108 3e6j_A Variable lymphocyte rec 99.8 2E-17 6.8E-22 157.9 17.6 137 471-611 40-176 (229)
109 1h6t_A Internalin B; cell adhe 99.7 4.3E-17 1.5E-21 161.7 19.6 170 365-582 44-214 (291)
110 3e6j_A Variable lymphocyte rec 99.7 3.7E-17 1.3E-21 156.0 17.5 153 428-582 21-173 (229)
111 1xeu_A Internalin C; cellular 99.7 2.9E-17 9.8E-22 160.2 14.5 126 446-583 62-187 (263)
112 4ezg_A Putative uncharacterize 99.7 3E-17 1E-21 152.9 13.0 150 447-607 44-194 (197)
113 1m9s_A Internalin B; cell inva 99.7 7.5E-18 2.5E-22 183.2 9.3 170 402-582 40-211 (605)
114 4ezg_A Putative uncharacterize 99.7 2.7E-17 9.3E-22 153.1 10.5 154 467-632 40-194 (197)
115 1xeu_A Internalin C; cellular 99.7 4.6E-17 1.6E-21 158.8 10.9 175 425-616 18-193 (263)
116 1w8a_A SLIT protein; signaling 99.7 1.8E-16 6.2E-21 146.6 13.6 138 474-617 11-149 (192)
117 1m9s_A Internalin B; cell inva 99.7 3.2E-16 1.1E-20 170.4 17.4 172 31-221 39-210 (605)
118 3sb4_A Hypothetical leucine ri 99.6 4.6E-16 1.6E-20 157.5 10.1 100 497-600 227-327 (329)
119 2wfh_A SLIT homolog 2 protein 99.6 2.3E-15 7.7E-20 139.1 13.4 138 474-618 13-150 (193)
120 1w8a_A SLIT protein; signaling 99.6 2.2E-15 7.6E-20 139.3 13.4 129 451-583 12-141 (192)
121 1dce_A Protein (RAB geranylger 99.6 2.1E-18 7.3E-23 186.4 -8.7 104 473-582 443-547 (567)
122 2o6r_A Variable lymphocyte rec 99.6 6.8E-15 2.3E-19 134.3 14.1 133 473-611 9-141 (177)
123 2ell_A Acidic leucine-rich nuc 99.6 2E-15 6.9E-20 136.5 10.4 134 471-607 24-160 (168)
124 3sb4_A Hypothetical leucine ri 99.6 9.7E-16 3.3E-20 155.1 9.1 101 519-624 225-326 (329)
125 2wfh_A SLIT homolog 2 protein 99.6 9.1E-15 3.1E-19 135.1 14.6 127 451-582 14-140 (193)
126 4fs7_A Uncharacterized protein 99.6 1.5E-13 5E-18 142.8 25.3 327 180-573 67-393 (394)
127 2ell_A Acidic leucine-rich nuc 99.6 1.6E-15 5.6E-20 137.1 9.2 134 446-582 23-161 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 2.1E-15 7.2E-20 133.4 8.1 129 471-602 17-148 (149)
129 4b8c_D Glucose-repressible alc 99.6 3.9E-16 1.3E-20 174.2 3.9 115 445-564 222-336 (727)
130 1dce_A Protein (RAB geranylger 99.6 2.5E-17 8.7E-22 178.0 -5.7 189 81-296 346-549 (567)
131 4fs7_A Uncharacterized protein 99.6 2.3E-13 7.8E-18 141.4 23.8 310 201-578 64-376 (394)
132 4b8c_D Glucose-repressible alc 99.6 4.5E-16 1.5E-20 173.7 3.5 186 405-611 173-358 (727)
133 2je0_A Acidic leucine-rich nuc 99.6 3.6E-15 1.2E-19 131.8 8.3 130 496-628 17-149 (149)
134 4fdw_A Leucine rich hypothetic 99.6 5.9E-13 2E-17 137.4 24.4 266 60-354 113-385 (401)
135 2o6r_A Variable lymphocyte rec 99.5 4.8E-14 1.6E-18 128.6 14.1 110 471-582 28-138 (177)
136 1a9n_A U2A', U2A'; complex (nu 99.5 2.1E-14 7E-19 130.8 10.5 137 465-607 13-153 (176)
137 4fdw_A Leucine rich hypothetic 99.5 1.5E-12 5.2E-17 134.3 24.8 267 81-380 110-383 (401)
138 1a9n_A U2A', U2A'; complex (nu 99.5 7.8E-14 2.7E-18 127.0 8.8 130 446-581 18-153 (176)
139 3g39_A Variable lymphocyte rec 99.4 4.6E-13 1.6E-17 120.8 11.4 103 474-580 12-114 (170)
140 4gt6_A Cell surface protein; l 99.4 2.9E-11 1E-15 125.4 26.0 132 465-606 259-390 (394)
141 3g39_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 118.2 12.3 110 497-611 10-119 (170)
142 2r9u_A Variable lymphocyte rec 99.4 8.6E-13 2.9E-17 119.4 11.4 102 474-579 15-116 (174)
143 1ds9_A Outer arm dynein; leuci 99.4 2.7E-15 9.1E-20 139.7 -7.1 112 466-583 43-155 (198)
144 2r9u_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 115.5 12.4 110 497-611 13-122 (174)
145 1ds9_A Outer arm dynein; leuci 99.4 2.6E-15 8.9E-20 139.8 -9.1 157 467-632 14-185 (198)
146 4gt6_A Cell surface protein; l 99.4 2E-10 6.8E-15 119.1 26.7 108 202-311 57-168 (394)
147 3un9_A NLR family member X1; l 99.3 1.2E-13 4E-18 141.3 -1.1 157 425-581 71-252 (372)
148 3un9_A NLR family member X1; l 99.2 4E-13 1.4E-17 137.3 -1.3 159 405-564 72-259 (372)
149 2ifg_A High affinity nerve gro 99.2 5E-11 1.7E-15 121.5 12.8 103 475-581 12-116 (347)
150 4h09_A Hypothetical leucine ri 99.1 1E-08 3.4E-13 105.8 25.1 85 465-552 257-341 (379)
151 2ifg_A High affinity nerve gro 99.1 1.5E-10 5.1E-15 118.0 11.1 104 451-558 12-117 (347)
152 4h09_A Hypothetical leucine ri 99.0 1.9E-08 6.7E-13 103.6 22.9 107 465-575 234-340 (379)
153 2ra8_A Uncharacterized protein 98.6 5.1E-09 1.7E-13 105.8 1.4 84 206-291 250-341 (362)
154 1io0_A Tropomodulin; LRR prote 98.6 1.8E-08 6.1E-13 91.8 2.8 91 517-607 62-164 (185)
155 2ra8_A Uncharacterized protein 98.6 1.8E-08 6.3E-13 101.8 3.1 158 465-630 166-341 (362)
156 1io0_A Tropomodulin; LRR prote 98.5 3.9E-08 1.3E-12 89.6 2.3 116 465-581 30-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.1E-07 3.6E-12 90.9 1.9 82 541-626 167-258 (267)
158 3e4g_A ATP synthase subunit S, 98.3 2.3E-07 7.7E-12 81.9 2.6 83 497-579 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 2E-07 6.8E-12 89.0 1.1 99 501-601 148-258 (267)
160 3e4g_A ATP synthase subunit S, 97.9 2.1E-06 7.1E-11 75.8 1.1 34 257-290 115-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 3.3E-05 1.1E-09 69.5 2.9 110 497-606 42-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 2.8E-05 9.5E-10 70.0 2.3 114 466-580 36-169 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0034 1.1E-07 52.6 5.9 35 522-556 33-67 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0073 2.5E-07 50.5 6.6 55 430-484 12-68 (130)
165 2lz0_A Uncharacterized protein 76.5 4.2 0.00014 31.6 5.2 47 507-554 7-53 (100)
166 2lz0_A Uncharacterized protein 58.2 10 0.00035 29.4 4.0 50 529-579 5-54 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-65 Score=583.27 Aligned_cols=579 Identities=27% Similarity=0.417 Sum_probs=493.6
Q ss_pred CCCCCCcEEEEECCCCCCCccee---ecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCc
Q 043978 2 CDNVTGNVIGLDLHGSCSWLRGT---IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPS 78 (683)
Q Consensus 2 c~~~~~~v~~L~L~~~~~~~~~~---~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~ 78 (683)
|+ +++|++|||++ ..+.|. +++ ++..+++|+.++++.+.+.. .++.|+++++|++|+|++|.+.+.+|.
T Consensus 47 C~--~~~v~~L~L~~--~~l~g~~~~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (768)
T 3rgz_A 47 CR--DDKVTSIDLSS--KPLNVGFSAVSS--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTT 118 (768)
T ss_dssp EE--TTEEEEEECTT--SCCCEEHHHHHH--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGG
T ss_pred EC--CCcEEEEECCC--CCcCCccCccCh--hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCC
Confidence 55 68999999999 888887 776 88899999999999887632 457899999999999999999988887
Q ss_pred --cCcCCCCCCEEeCCCCcCccccCCHHHH-HccCCCCCEEEcCCccCCcCChhh---hhcCcCCccEEEcCCCcCCCCC
Q 043978 79 --EISHLSKLTHLGLSCRVLTIEQRTFDLL-ASNLTKLSLLHLGSTNLSLIKPFS---LLNLSSTMTDLDLSGTRIQGNF 152 (683)
Q Consensus 79 --~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~~L~~L~l~~n~i~~~~ 152 (683)
.++++++|++|++++|.+.. ..|.. +.++++|++|++++|.+++..+.. +.++ ++|++|++++|.+.+..
T Consensus 119 ~~~l~~l~~L~~L~Ls~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~ 194 (768)
T 3rgz_A 119 LTSLGSCSGLKFLNVSSNTLDF---PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC-GELKHLAISGNKISGDV 194 (768)
T ss_dssp GGGGGGCTTCCEEECCSSEEEC---CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC-TTCCEEECCSSEEESCC
T ss_pred hHHHhCCCCCCEEECcCCccCC---cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC-CCCCEEECCCCcccccC
Confidence 89999999999999998762 22322 378999999999999999887776 7788 99999999999998765
Q ss_pred CccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCC
Q 043978 153 PDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLS 232 (683)
Q Consensus 153 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 232 (683)
+ +..+++|++|++++| .+.+.++.+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|.. .++
T Consensus 195 ~--~~~l~~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~ 269 (768)
T 3rgz_A 195 D--VSRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 269 (768)
T ss_dssp B--CTTCTTCCEEECCSS-CCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCT
T ss_pred C--cccCCcCCEEECcCC-cCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccC
Confidence 4 388999999999999 77777777899999999999999999889999999999999999999998877765 889
Q ss_pred CCCeeeccCccccccCCccccCC-CCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCC-C-CCCCCCCcEEE
Q 043978 233 KATEILFASNHLTGQLPHHVSGL-LYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPID-G-FQSPNSLEEVH 309 (683)
Q Consensus 233 ~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~-~~~~~~L~~L~ 309 (683)
+|++|++++|.+.+.+|..+... ++|++|++++|.+++..|..+..+++|+.|++++|.+.+.++ . +..+++|++|+
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 99999999999998888888775 999999999999999999999999999999999999985443 3 66899999999
Q ss_pred CCCCcCcccCCccchhccCcccccccCCCC-CCCEEeCCCCCcccccccccccccc--CCCCccEEEcccCCCC-CcChh
Q 043978 310 LEKNQIHGTIPSSLFQLCGTIRFDQFSKLK-NLQFLDLSNNNLLSFTSSGNIDIKY--SLPSLLKLSFSNCNVS-EFPSF 385 (683)
Q Consensus 310 L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~~--~~~~L~~L~l~~~~l~-~~p~~ 385 (683)
+++|.+.+.+|.. +..++ +|+.|++++|.+..... .... .+++|++|++++|.+. .+|..
T Consensus 350 Ls~n~l~~~~p~~------------l~~l~~~L~~L~Ls~N~l~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 413 (768)
T 3rgz_A 350 LSFNEFSGELPES------------LTNLSASLLTLDLSSNNFSGPIL----PNLCQNPKNTLQELYLQNNGFTGKIPPT 413 (768)
T ss_dssp CCSSEEEECCCTT------------HHHHTTTCSEEECCSSEEEEECC----TTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred CcCCccCccccHH------------HHhhhcCCcEEEccCCCcCCCcC----hhhhhcccCCccEEECCCCccccccCHH
Confidence 9999999888873 44455 89999999998653211 1122 3778999999999776 44443
Q ss_pred hhhccccccccCCCcccCCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCccCCC---CCCCCcEEEccCCcc
Q 043978 386 LRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGSILV---PPPSTEVFLVSNNKL 459 (683)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~i 459 (683)
+ ..+++|+.|++++|.+++..+ ..+++|+.|++++|.+++..+. .+++|++|++++|.+
T Consensus 414 l---------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 414 L---------------SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp G---------------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred H---------------hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 2 677889999999998886543 3678899999999998876554 578899999999999
Q ss_pred cCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchh
Q 043978 460 SGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS 539 (683)
Q Consensus 460 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 539 (683)
.+.+|..+..+++|++|++++|++.+.+|..+..+. +|++|++++|++.+..|..+..+++|+.|++++|++++.+|..
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 988899999999999999999999888888888766 8999999999999888889999999999999999888666654
Q ss_pred h----------------------------------------------------------------------hcCCCCcEE
Q 043978 540 L----------------------------------------------------------------------AKCVKLEVV 549 (683)
Q Consensus 540 l----------------------------------------------------------------------~~l~~L~~L 549 (683)
+ ..+++|++|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 3 335678999
Q ss_pred EccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccc
Q 043978 550 NVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQAT 629 (683)
Q Consensus 550 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n 629 (683)
++++|++++.+|..++.+++|+.|+|++|++++.+| ..+..+++|++||+++|+++|.+| ..|+.++.|+.+++++|
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP--DEVGDLRGLNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNN 714 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEECCC-GGGGGCCCCSEEECCSS
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC--hHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECcCC
Confidence 999999999999999999999999999999998887 456889999999999999999999 57899999999999999
Q ss_pred eee
Q 043978 630 RLQ 632 (683)
Q Consensus 630 ~~~ 632 (683)
+++
T Consensus 715 ~l~ 717 (768)
T 3rgz_A 715 NLS 717 (768)
T ss_dssp EEE
T ss_pred ccc
Confidence 885
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-63 Score=565.72 Aligned_cols=576 Identities=28% Similarity=0.368 Sum_probs=357.6
Q ss_pred cEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCccc-CCCCCCCEEeCCCCCCCCCCCcc---CcCC
Q 043978 8 NVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEF-GRLKELTYLNPSFSNFGGLVPSE---ISHL 83 (683)
Q Consensus 8 ~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~l~~L~~L~Ls~~~~~~~~~~~---~~~l 83 (683)
++++|||++ +.+.+.++....+..+++|++|+|++|.+... .+..+ .++++|++|++++|.+++..|.. +.++
T Consensus 101 ~L~~L~Ls~--n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 101 SLTSLDLSR--NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp TCCEEECCS--SEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCEEECCC--CcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 455555555 55554444333455555555555555554433 23222 45555555555555555554444 4555
Q ss_pred CCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCc
Q 043978 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLR 163 (683)
Q Consensus 84 ~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 163 (683)
++|++|++++|.+.... + +..+++|++|++++|.+.+..+. +..+ ++|++|++++|.+++..|..+..+++|+
T Consensus 178 ~~L~~L~Ls~n~l~~~~---~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 178 GELKHLAISGNKISGDV---D--VSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp TTCCEEECCSSEEESCC---B--CTTCTTCCEEECCSSCCCSCCCB-CTTC-CSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred CCCCEEECCCCcccccC---C--cccCCcCCEEECcCCcCCCCCcc-cccC-CCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence 55555555555544211 1 14555566666665555554443 5555 5566666666655555555555566666
Q ss_pred EEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCC-CCCCEEEccCCcccccCCCCCCCCCCCCeeeccCc
Q 043978 164 VLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNL-LFLETVDITYCNFMGSIPTSTGNLSKATEILFASN 242 (683)
Q Consensus 164 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 242 (683)
+|++++| .+.+..+.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+..|..++.+++|++|++++|
T Consensus 251 ~L~Ls~n-~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 251 LLNISSN-QFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp EEECCSS-CCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCC-cccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence 6666655 444444433 45556666666665555555555443 56666666666665555555666666666666666
Q ss_pred cccccCCcc-ccCCCCCCEEEccCCcCcccCCccccCCC-CCcEEEccCCcccCc-CCCCCC--CCCCcEEECCCCcCcc
Q 043978 243 HLTGQLPHH-VSGLLYLTNLDLFGNSLQGKVPSWLFTLP-SLVSVNLAWNKLTGP-IDGFQS--PNSLEEVHLEKNQIHG 317 (683)
Q Consensus 243 ~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~i~~~-~~~~~~--~~~L~~L~L~~n~i~~ 317 (683)
.+.+.+|.. +..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+. ++.+.. +++|++|++++|.+++
T Consensus 329 ~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 655444433 55566666666666665555555555554 566666666655542 222222 4556666666666655
Q ss_pred cCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCC-CcChhhhhcccccccc
Q 043978 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVS-EFPSFLRNSEKIHGRI 396 (683)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p~~l~~~~~~~~~~ 396 (683)
.+|. .+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+. .+|..+
T Consensus 409 ~~p~------------~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~~---------- 462 (768)
T 3rgz_A 409 KIPP------------TLSNCSELVSLHLSFNYLSGTIP----SSLGSLSKLRDLKLWLNMLEGEIPQEL---------- 462 (768)
T ss_dssp ECCG------------GGGGCTTCCEEECCSSEEESCCC----GGGGGCTTCCEEECCSSCCCSCCCGGG----------
T ss_pred ccCH------------HHhcCCCCCEEECcCCcccCccc----HHHhcCCCCCEEECCCCcccCcCCHHH----------
Confidence 5544 45556666666666666542211 22345666666666666655 333322
Q ss_pred CCCcccCCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCccCCC---CCCCCcEEEccCCcccCCCCccccCC
Q 043978 397 SKHDSKGWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGSILV---PPPSTEVFLVSNNKLSGQIPPYICSL 470 (683)
Q Consensus 397 ~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l 470 (683)
..+++|+.|++++|.+++..+ ..+++|+.|++++|++++..+. .+++|++|++++|++.+.+|..+..+
T Consensus 463 -----~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 463 -----MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp -----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred -----cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 456667777777777665432 2456677777777777655443 45667777777777776777777777
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccC---------------------------------------------cccEEECCC
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTT---------------------------------------------QLITLHLKN 505 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~---------------------------------------------~L~~L~l~~ 505 (683)
++|+.|++++|++.+.+|..++.... .+..++++.
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 77777777777776666666554320 111223334
Q ss_pred CcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLC 585 (683)
Q Consensus 506 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 585 (683)
|.+.+..|..|..+++|+.|++++|++++.+|..+..+++|++|++++|.+++.+|..|+.+++|++|+|++|++++.+|
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 55555566677788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccce
Q 043978 586 KSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATR 630 (683)
Q Consensus 586 ~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~ 630 (683)
..+..++.|++||+++|+++|.+|.. ..+..+......+|+
T Consensus 698 --~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 698 --QAMSALTMLTEIDLSNNNLSGPIPEM--GQFETFPPAKFLNNP 738 (768)
T ss_dssp --GGGGGCCCCSEEECCSSEEEEECCSS--SSGGGSCGGGGCSCT
T ss_pred --hHHhCCCCCCEEECcCCcccccCCCc--hhhccCCHHHhcCCc
Confidence 45688999999999999999999953 234444555555664
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-56 Score=503.21 Aligned_cols=588 Identities=21% Similarity=0.201 Sum_probs=479.3
Q ss_pred EEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEE
Q 043978 10 IGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHL 89 (683)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 89 (683)
+.+|.++ ..++ .++. .+. +++++|+|++|.+.+. .+..|.++++|++|++++|.+.+..|.+|+++++|++|
T Consensus 7 ~~~~cs~--~~L~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 78 (680)
T 1ziw_A 7 EVADCSH--LKLT-QVPD--DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78 (680)
T ss_dssp SEEECCS--SCCS-SCCS--CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred CeeECCC--CCcc-cccc--ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence 4678887 6665 4554 343 7899999999998775 45679999999999999999999999999999999999
Q ss_pred eCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccC
Q 043978 90 GLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCG 169 (683)
Q Consensus 90 ~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 169 (683)
++++|.+...+. ..++++++|++|++++|.+.++.+..|+++ ++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 79 ~L~~n~l~~l~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 79 NLQHNELSQLSD---KTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp ECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCCCCSCTTTTC-TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred ECCCCccCccCh---hhhccCCCCCEEECCCCccCccChhHcccc-CCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 999998873222 246899999999999999999888889999 9999999999999988888899999999999999
Q ss_pred CCCCcccCC-C--CCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCC---CCCCCCCeeeccCcc
Q 043978 170 NIHLTGYLP-K--CNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST---GNLSKATEILFASNH 243 (683)
Q Consensus 170 n~~~~~~~~-~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~n~ 243 (683)
| .+.+..+ . ...+++|++|++++|.+.+..|..+..+++|+.+++.++.+.......+ ...++|+.|++++|.
T Consensus 155 n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 155 N-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp S-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred C-cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 9 6665544 2 3356899999999999998888899999999999999887653221111 124789999999999
Q ss_pred ccccCCccccCCCC--CCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcC-CCCCCCCCCcEEECCCCcCcccCC
Q 043978 244 LTGQLPHHVSGLLY--LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSLEEVHLEKNQIHGTIP 320 (683)
Q Consensus 244 l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~~L~~L~L~~n~i~~~~~ 320 (683)
+.+..+.++..++. |++|++++|.+.+..+..+..+++|+.|++++|.+.+.. ..+..+++|++|++++|...+.++
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 99888888888755 999999999999888888999999999999999998754 456689999999999876554322
Q ss_pred ccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCC--CcChhhhhccccccccCC
Q 043978 321 SSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVS--EFPSFLRNSEKIHGRISK 398 (683)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~--~~p~~l~~~~~~~~~~~~ 398 (683)
..- ...+....|..+++|++|++++|.+..++. ..+..+++|++|++++|.+. .++..
T Consensus 314 ~~~---lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~~~~~~l~~~------------- 373 (680)
T 1ziw_A 314 LAS---LPKIDDFSFQWLKCLEHLNMEDNDIPGIKS----NMFTGLINLKYLSLSNSFTSLRTLTNE------------- 373 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCT----TTTTTCTTCCEEECTTCBSCCCEECTT-------------
T ss_pred ccc---ccccChhhcccCCCCCEEECCCCccCCCCh----hHhccccCCcEEECCCCchhhhhcchh-------------
Confidence 100 012333468889999999999999776543 34568899999999998643 33321
Q ss_pred Cccc--CCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCccC----CCCCCCCcEEEccCCcccCCCCccccC
Q 043978 399 HDSK--GWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGSI----LVPPPSTEVFLVSNNKLSGQIPPYICS 469 (683)
Q Consensus 399 ~~~~--~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~i~~~~~~~l~~ 469 (683)
.+. ..++|+.|++++|.++++.+ ..+++|+.|++++|.+++.. +..+++|++|++++|.+.+..+..|..
T Consensus 374 -~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 452 (680)
T 1ziw_A 374 -TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452 (680)
T ss_dssp -TTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTT
T ss_pred -hhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhc
Confidence 112 23689999999999988754 46788999999999987643 457899999999999999888899999
Q ss_pred CCCCCEEEcCCCcCC--CCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCc--------hh
Q 043978 470 LSSLKYLSLSHNNLS--GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLP--------RS 539 (683)
Q Consensus 470 l~~L~~L~Ls~n~i~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~ 539 (683)
+++|+.|++++|.+. +.+|..+..+. +|+.|++++|++++..+..|.++++|+.|++++|++++..+ ..
T Consensus 453 ~~~L~~L~l~~n~l~~~~~~p~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 453 VPSLQRLMLRRVALKNVDSSPSPFQPLR-NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531 (680)
T ss_dssp CTTCCEEECTTSCCBCTTCSSCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT
T ss_pred CcccccchhccccccccccCCcccccCC-CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh
Confidence 999999999999885 46777777665 99999999999998888899999999999999999986422 24
Q ss_pred hhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHh-cc
Q 043978 540 LAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFT-SM 618 (683)
Q Consensus 540 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~-~~ 618 (683)
|..+++|++|++++|.+....+..|..+++|++|++++|++++..+ ..+..+++|+.|++++|++++ +|...|. .+
T Consensus 532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~ 608 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA--SVFNNQVSLKSLNLQKNLITS-VEKKVFGPAF 608 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECTTSCCCB-CCHHHHHHHH
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH--hHhCCCCCCCEEECCCCcCCc-cChhHhcccc
Confidence 7889999999999999996666679999999999999999986543 345688999999999999996 5557777 88
Q ss_pred hhhcccccccceeeecc
Q 043978 619 EAMKNVDEQATRLQYMG 635 (683)
Q Consensus 619 ~~L~~l~l~~n~~~~~~ 635 (683)
++|+.+++++|++.--.
T Consensus 609 ~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 609 RNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTCSEEECTTCCCCBCC
T ss_pred cccCEEEccCCCcccCC
Confidence 99999999999986543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-56 Score=503.32 Aligned_cols=572 Identities=21% Similarity=0.195 Sum_probs=473.4
Q ss_pred CCcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCC
Q 043978 6 TGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSK 85 (683)
Q Consensus 6 ~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 85 (683)
+.++++|+|++ +.+++..+. +|..+++|++|+|++|.+.+. .+..|+++++|++|++++|.++++.+.+|+++++
T Consensus 24 ~~~l~~L~Ls~--n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 24 PTNITVLNLTH--NQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp CTTCSEEECCS--SCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECCC--CCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 46899999999 888865555 799999999999999998876 6788999999999999999999887788999999
Q ss_pred CCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCC--CCCCCc
Q 043978 86 LTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIF--LLPNLR 163 (683)
Q Consensus 86 L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~--~l~~L~ 163 (683)
|++|++++|.+.... +..++++++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+. .+++|+
T Consensus 99 L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 99 LTELHLMSNSIQKIK---NNPFVKQKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp CSEEECCSSCCCCCC---SCTTTTCTTCCEEECCSSCCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred CCEEECCCCccCccC---hhHccccCCCCEEECCCCcccccCchhhccc-ccCCEEEccCCcccccCHHHhhcccccccc
Confidence 999999999886332 2346899999999999999999888889899 9999999999999877666543 568999
Q ss_pred EEEccCCCCCcccCC-CCCCCCCCCEEECCCCcCccccCccc---cCCCCCCEEEccCCcccccCCCCCCCCCC--CCee
Q 043978 164 VLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSI---GNLLFLETVDITYCNFMGSIPTSTGNLSK--ATEI 237 (683)
Q Consensus 164 ~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~l~~--L~~L 237 (683)
+|++++| .+.+..+ .+..+++|+.|+++++.+.......+ ...++|+.|++++|.+.+..+.++..++. |++|
T Consensus 175 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 175 KLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp EEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred EEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 9999999 6666555 67788999999999988754322221 13578999999999999988999988765 9999
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCc-----C-----CCCCCCCCCcE
Q 043978 238 LFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGP-----I-----DGFQSPNSLEE 307 (683)
Q Consensus 238 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-----~-----~~~~~~~~L~~ 307 (683)
++++|.+.+..+..++.+++|++|++++|.+.+..|..+..+++|+.|++++|..... . ..+..+++|++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 9999999988889999999999999999999988899999999999999998754421 1 14568899999
Q ss_pred EECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcc--ccccccccccccCCCCccEEEcccCCCCCcChh
Q 043978 308 VHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL--SFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSF 385 (683)
Q Consensus 308 L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~ 385 (683)
|++++|.+.+..+. .|..+++|++|++++|.+. .++.. .......++|+.|++++|++..++.
T Consensus 334 L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~~~~~~l~~~--~f~~~~~~~L~~L~L~~n~l~~~~~- 398 (680)
T 1ziw_A 334 LNMEDNDIPGIKSN------------MFTGLINLKYLSLSNSFTSLRTLTNE--TFVSLAHSPLHILNLTKNKISKIES- 398 (680)
T ss_dssp EECCSCCBCCCCTT------------TTTTCTTCCEEECTTCBSCCCEECTT--TTGGGTTSCCCEEECTTSCCCEECT-
T ss_pred EECCCCccCCCChh------------HhccccCCcEEECCCCchhhhhcchh--hhcccccCcCceEECCCCCCCeECh-
Confidence 99999999854444 6888999999999999742 22211 0111134689999999999876532
Q ss_pred hhhccccccccCCCcccCCCcCcEEECCCCccccc----CCCCCCCceEEeCCCCCCCcc---CCCCCCCCcEEEccCCc
Q 043978 386 LRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI----ALHPWKNIRTLDLRNNKIQGS---ILVPPPSTEVFLVSNNK 458 (683)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~L~~L~l~~n~l~~~---~~~~~~~L~~L~l~~n~ 458 (683)
..+..+++|+.|++++|.+++. .+..+++|+.|++++|++.+. .+..+++|++|++++|.
T Consensus 399 -------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 399 -------------DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp -------------TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred -------------hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 1237789999999999998753 345789999999999998754 34578999999999999
Q ss_pred cc--CCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccccc--------ccccCCCCccEEEcC
Q 043978 459 LS--GQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIH--------DTFENASNIQSFDLN 528 (683)
Q Consensus 459 i~--~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~ 528 (683)
+. +..|..+..+++|+.|++++|.+++..+..+..+ ++|++|++++|++++..+ ..|.++++|+.|+++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC
Confidence 87 5678899999999999999999995444445555 499999999999987533 247889999999999
Q ss_pred CCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCcccc-CCCCCcEEeCCCCcCC
Q 043978 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTF-SFQALRIIDLSRNEFK 607 (683)
Q Consensus 529 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~ls~n~~~ 607 (683)
+|+++...+..|..+++|++|++++|+++...+..|..+++|+.|++++|++++..+ ..+. .+++|+++++++|++.
T Consensus 545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK--KVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH--HHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh--hHhcccccccCEEEccCCCcc
Confidence 999997666789999999999999999998777788999999999999999987644 2233 6789999999999999
Q ss_pred CCCcH-HHHhcc
Q 043978 608 DFLPR-RNFTSM 618 (683)
Q Consensus 608 ~~~p~-~~~~~~ 618 (683)
+.++. .+|..+
T Consensus 623 c~c~~~~~~~~~ 634 (680)
T 1ziw_A 623 CTCESIAWFVNW 634 (680)
T ss_dssp BCCCCCSSEECC
T ss_pred cCCccHHHHHHH
Confidence 87773 455443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-51 Score=457.56 Aligned_cols=514 Identities=20% Similarity=0.183 Sum_probs=296.0
Q ss_pred CCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccE
Q 043978 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTD 140 (683)
Q Consensus 61 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~ 140 (683)
++++|++++|.++++.|.+|+++++|++|++++|.+.. ..|..+.++++|++|++++|.+....+..|+.+ ++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~ 109 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW---IHEDTFQSQHRLDTLVLTANPLIFMAETALSGP-KALKH 109 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC-TTCCE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccce---eChhhccCccccCeeeCCCCcccccChhhhccc-ccccE
Confidence 45555555555555555555555555555555554431 112223455555555555555555555555555 56666
Q ss_pred EEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcc-cCCCCCCCCCCCEEECCCCcCccccCccccCCCCCC--EEEccC
Q 043978 141 LDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTG-YLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLE--TVDITY 217 (683)
Q Consensus 141 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~--~L~l~~ 217 (683)
|++++|++++..+..+..+++|++|++++| .+.. ..+.+..+++|++|++++|.+.+..+..+..+++|+ .|++++
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 666666555444455556666666666665 3333 223344456666666666666655555666666666 666666
Q ss_pred CcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCc-----ccCCccccCCC--CCcEEEccCC
Q 043978 218 CNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ-----GKVPSWLFTLP--SLVSVNLAWN 290 (683)
Q Consensus 218 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~--~L~~L~L~~n 290 (683)
|.+.+..+..+.. ..|+.|++++|.. .+..+..+.+++...+...... ...+..+..+. +|+.|++++|
T Consensus 189 n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 189 NDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred CccCccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 6666555544433 4566666666541 2222333333222222211111 11111222221 4566666666
Q ss_pred cccCcCCC-CCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCc
Q 043978 291 KLTGPIDG-FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSL 369 (683)
Q Consensus 291 ~i~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L 369 (683)
.+....+. +..+++|++|++++|.++ .+|. .+..+++|++|++++|.+..+.. ..+..+++|
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~------------~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L 327 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPS------------GLVGLSTLKKLVLSANKFENLCQ----ISASNFPSL 327 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS------------SCCSCTTCCEEECTTCCCSBGGG----GCGGGCTTC
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCCh------------hhcccccCCEEECccCCcCcCch----hhhhccCcC
Confidence 66554333 445566666666666655 3443 34556666666666666544422 123355666
Q ss_pred cEEEcccCCCC-CcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccC-----CCCCCCceEEeCCCCCCCccC-
Q 043978 370 LKLSFSNCNVS-EFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA-----LHPWKNIRTLDLRNNKIQGSI- 442 (683)
Q Consensus 370 ~~L~l~~~~l~-~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~l~~~~- 442 (683)
++|++++|.+. .+| ...+..+++|+.|++++|.+++.. +..+++|+.|++++|++.+..
T Consensus 328 ~~L~l~~n~~~~~~~--------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 328 THLSIKGNTKRLELG--------------TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp SEEECCSCSSCCBCC--------------SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred CEEECCCCCcccccc--------------hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence 66666666543 222 222255666666666666665542 235566666666666655432
Q ss_pred --CCCCCCCcEEEccCCcccCCCCc-cccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccc---ccccc
Q 043978 443 --LVPPPSTEVFLVSNNKLSGQIPP-YICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGH---IHDTF 516 (683)
Q Consensus 443 --~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~ 516 (683)
+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+. +|++|++++|++.+. .+..+
T Consensus 394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGEECSSCGG
T ss_pred HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccccccchhh
Confidence 23456666777777766655443 377777788888888777755555555544 788888888877653 22457
Q ss_pred cCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCC
Q 043978 517 ENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQAL 596 (683)
Q Consensus 517 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 596 (683)
..+++|+.|++++|++++..|..|..+++|++|++++|++++..|.++..+++| .|++++|++++..+ ..+..+++|
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~--~~~~~l~~L 549 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP--SLLPILSQQ 549 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG--GGHHHHHTS
T ss_pred ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH--hhcccCCCC
Confidence 777788888888888777777777778888888888888877777777777888 88888888775544 334566777
Q ss_pred cEEeCCCCcCCCCCcHHHHhcc
Q 043978 597 RIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 597 ~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
+.|++++|++.+.++..+|..+
T Consensus 550 ~~L~l~~N~~~c~c~~~~~~~w 571 (606)
T 3t6q_A 550 RTINLRQNPLDCTCSNIYFLEW 571 (606)
T ss_dssp SEEECTTCCEECSGGGHHHHHH
T ss_pred CEEeCCCCCccccCCcHHHHHH
Confidence 8888888888776665555433
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.3e-51 Score=451.76 Aligned_cols=508 Identities=18% Similarity=0.183 Sum_probs=353.7
Q ss_pred cCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCE
Q 043978 36 HLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSL 115 (683)
Q Consensus 36 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~ 115 (683)
++++|++++|.+++. .+..|+++++|++|++++|.+.++.|.+|+++++|++|++++|.+.. ..|..++++++|++
T Consensus 34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF---MAETALSGPKALKH 109 (606)
T ss_dssp TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE---ECTTTTSSCTTCCE
T ss_pred cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc---cChhhhcccccccE
Confidence 577888887777655 46677778888888888887777777777888888888888777652 22334677788888
Q ss_pred EEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCC--EEECC
Q 043978 116 LHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLR--ELDLS 192 (683)
Q Consensus 116 L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~--~L~L~ 192 (683)
|++++|.++...+..+..+ ++|++|++++|++.+.....+..+++|++|++++| .+....+ .+..+++|+ .|+++
T Consensus 110 L~L~~n~i~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp EECTTSCCSCGGGSCCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECT
T ss_pred eeccccCcccCCcchhccC-CcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecC
Confidence 8888877777666677777 77888888888777644344445777888888777 5554433 456666777 77777
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCe--eeccCc---cccccCCccccCCC--CCCEEEccC
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATE--ILFASN---HLTGQLPHHVSGLL--YLTNLDLFG 265 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~--L~l~~n---~l~~~~~~~l~~l~--~L~~L~l~~ 265 (683)
+|.+.+..|..+. ...|+.|++++|... +..+..+..++. +.+... ......+..+..+. +|++|++++
T Consensus 188 ~n~l~~~~~~~~~-~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 188 GNDIAGIEPGAFD-SAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp TCCCCEECTTTTT-TCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred CCccCccChhHhh-hccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 7777755554443 356777777776421 111222222211 111110 01111122222222 566777777
Q ss_pred CcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEe
Q 043978 266 NSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLD 345 (683)
Q Consensus 266 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 345 (683)
|.+.+..+..+..+++|+.|++++|.++..+..+..+++|++|++++|.+.+..|. .+..+++|++|+
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~ 331 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI------------SASNFPSLTHLS 331 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGG------------CGGGCTTCSEEE
T ss_pred CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchh------------hhhccCcCCEEE
Confidence 77766666666667777777777777665555566667777777777766633332 455667777777
Q ss_pred CCCCCcc-ccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC--
Q 043978 346 LSNNNLL-SFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL-- 422 (683)
Q Consensus 346 l~~n~l~-~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-- 422 (683)
+++|.+. .++. ..+..+++|++|++++|.+..++.. + ..+..+++|+.|++++|.+.+..+
T Consensus 332 l~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-----------~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 332 IKGNTKRLELGT----GCLENLENLRELDLSHDDIETSDCC-----------N-LQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp CCSCSSCCBCCS----STTTTCTTCCEEECCSSCCCEEEES-----------T-TTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred CCCCCcccccch----hhhhccCcCCEEECCCCccccccCc-----------c-hhcccCCCCCEEECCCCcCCcCCHHH
Confidence 7777643 1211 2244667777777777766543210 1 112566777777777777766533
Q ss_pred -CCCCCceEEeCCCCCCCccC----CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCC---CChhhhhc
Q 043978 423 -HPWKNIRTLDLRNNKIQGSI----LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGT---IPPCLGNF 494 (683)
Q Consensus 423 -~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~---~~~~~~~~ 494 (683)
..+++|+.|++++|++++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 35677888888888776543 34678899999999999888889999999999999999999752 22445555
Q ss_pred cCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEE
Q 043978 495 TTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILI 574 (683)
Q Consensus 495 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 574 (683)
. +|+.|++++|++++..+..|.++++|+.|++++|++++..|..+..+++| +|++++|.+++..|..+..+++|+.|+
T Consensus 476 ~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 476 G-RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp T-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred C-CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence 4 99999999999999999999999999999999999999999999999999 999999999998888899999999999
Q ss_pred ccCCcCccc
Q 043978 575 LRSNRFYGP 583 (683)
Q Consensus 575 l~~n~l~~~ 583 (683)
+++|++...
T Consensus 554 l~~N~~~c~ 562 (606)
T 3t6q_A 554 LRQNPLDCT 562 (606)
T ss_dssp CTTCCEECS
T ss_pred CCCCCcccc
Confidence 999998754
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-50 Score=448.54 Aligned_cols=513 Identities=20% Similarity=0.164 Sum_probs=309.0
Q ss_pred ccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 35 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
++|++|+|++|.+.+. .+..|.++++|++|++++|.++++.|.+|.++++|++|++++|.+.. ..|..++++++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~---~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS---FSPGSFSGLTSLE 107 (606)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC---CCTTSSTTCTTCC
T ss_pred CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc---cChhhcCCcccCC
Confidence 4455555555555433 23345555555555555555555555555555555555555554431 1122344455555
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCC-CCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCC
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQG-NFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSL 193 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 193 (683)
+|++++|.+....+..++++ ++|++|++++|.+.+ .+|..++++++|++|++++|
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n----------------------- 163 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQL-ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN----------------------- 163 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTC-TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-----------------------
T ss_pred EEEccCCccccccccccCCC-CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-----------------------
Confidence 55555555544444444444 455555555555443 23444445555555555544
Q ss_pred CcCccccCccccCCCCCC----EEEccCCcccccCCCCCCCCCCCCeeeccCcccc-ccCCccccCCCCCCEEEccCCcC
Q 043978 194 SDFSGEIPYSIGNLLFLE----TVDITYCNFMGSIPTSTGNLSKATEILFASNHLT-GQLPHHVSGLLYLTNLDLFGNSL 268 (683)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l 268 (683)
.+.+..+..+..+++|+ ++++++|.+.+..+..+... +|++|++++|.+. +..+..+.+++.++.+++..+.+
T Consensus 164 -~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~ 241 (606)
T 3vq2_A 164 -YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241 (606)
T ss_dssp -CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred -cceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccc
Confidence 44443343343333322 45555555443333333322 4555555555443 23334444555555444433222
Q ss_pred cc------cCCccccCCC--CCcEEEc-cCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCC
Q 043978 269 QG------KVPSWLFTLP--SLVSVNL-AWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLK 339 (683)
Q Consensus 269 ~~------~~~~~l~~l~--~L~~L~L-~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 339 (683)
.. ..+..+..+. .++.+++ ..+.+.+..+.+..+++|+.|++++|.+. .+| .+..++
T Consensus 242 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-------------~l~~~~ 307 (606)
T 3vq2_A 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-------------DVPKHF 307 (606)
T ss_dssp TTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-------------CCCTTC
T ss_pred ccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-------------hccccc
Confidence 11 0001111111 2344444 33344443333445555555555555554 111 244555
Q ss_pred CCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccc
Q 043978 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTH 419 (683)
Q Consensus 340 ~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 419 (683)
+|+.|++++|.+..++ .. .+++|+.|++++|....- + .+..+++|+.|++++|.+++
T Consensus 308 ~L~~L~l~~n~l~~lp------~~-~l~~L~~L~l~~n~~~~~-------------~---~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQFP------TL-DLPFLKSLTLTMNKGSIS-------------F---KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp CCSEEEEESCCCSSCC------CC-CCSSCCEEEEESCSSCEE-------------C---CCCCCTTCCEEECCSSCEEE
T ss_pred cCCEEEcccccCcccc------cC-CCCccceeeccCCcCccc-------------h---hhccCCCCCEEECcCCccCC
Confidence 5666666666543332 11 455666666665532210 0 11455666666666666654
Q ss_pred cC-----CCCCCCceEEeCCCCCCCcc--CCCCCCCCcEEEccCCcccCCCC-ccccCCCCCCEEEcCCCcCCCCCChhh
Q 043978 420 IA-----LHPWKNIRTLDLRNNKIQGS--ILVPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKYLSLSHNNLSGTIPPCL 491 (683)
Q Consensus 420 ~~-----~~~~~~L~~L~l~~n~l~~~--~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 491 (683)
.. +..+++|+.|++++|.+++. .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred CcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence 42 12556667777777766543 23457788888888888887776 688999999999999999987777777
Q ss_pred hhccCcccEEECCCCcccc-cccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCC
Q 043978 492 GNFTTQLITLHLKNNSLEG-HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLL 570 (683)
Q Consensus 492 ~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 570 (683)
..+. +|++|++++|++.+ ..+..|..+++|+.|++++|++++..|..|..+++|++|++++|++++..|..|+.+++|
T Consensus 445 ~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 445 LGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred cCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 7665 99999999999987 478899999999999999999999999999999999999999999999889999999999
Q ss_pred CEEEccCCcCcccCCCCccccCCC-CCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 571 KILILRSNRFYGPLCKSITTFSFQ-ALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 571 ~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
++|++++|+++. +|.. +..++ +|++|++++|++.+.++..+|..+
T Consensus 524 ~~L~l~~N~l~~-~p~~--~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 524 STLDCSFNRIET-SKGI--LQHFPKSLAFFNLTNNSVACICEHQKFLQW 569 (606)
T ss_dssp CEEECTTSCCCC-EESC--GGGSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred CEEECCCCcCcc-cCHh--HhhhcccCcEEEccCCCcccCCccHHHHHH
Confidence 999999999984 4432 56776 599999999999988887666554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-50 Score=448.85 Aligned_cols=521 Identities=17% Similarity=0.172 Sum_probs=401.7
Q ss_pred CCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEE
Q 043978 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLL 116 (683)
Q Consensus 37 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L 116 (683)
-++++.+++.++. +|..+. ++|++|++++|.++++.+..|.++++|++|++++|.+.
T Consensus 13 ~~~~~c~~~~l~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------- 69 (606)
T 3vq2_A 13 NITYQCMDQKLSK--VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE------------------- 69 (606)
T ss_dssp TTEEECTTSCCSS--CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-------------------
T ss_pred CCceEccCCCccc--CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-------------------
Confidence 3567777777654 454443 57888888888887777777777777777777776554
Q ss_pred EcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCc
Q 043978 117 HLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSD 195 (683)
Q Consensus 117 ~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~ 195 (683)
++.+..|.++ ++|++|++++|++.+..|..++.+++|++|++++| .+....+ .+..+++|++|++++|.
T Consensus 70 --------~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 70 --------TIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNF 139 (606)
T ss_dssp --------EECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred --------ccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCc
Confidence 3333344444 44555555555554444445555555555555555 3333322 45555566666666666
Q ss_pred Ccc-ccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCC----eeeccCccccccCCccccCCCCCCEEEccCCcCc-
Q 043978 196 FSG-EIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKAT----EILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ- 269 (683)
Q Consensus 196 ~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~- 269 (683)
+.+ .+|..+.++++|++|++++|.+.+..+..++.+++|+ ++++++|.+.+..+..+... +|++|++++|.+.
T Consensus 140 l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~ 218 (606)
T 3vq2_A 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSS 218 (606)
T ss_dssp CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCH
T ss_pred ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccch
Confidence 654 4688999999999999999999988888888777665 89999999997777766655 8999999999886
Q ss_pred ccCCccccCCCCCcEEEccCCcccCc--CCC-----CCCC--CCCcEEEC-CCCcCcccCCccchhccCcccccccCCCC
Q 043978 270 GKVPSWLFTLPSLVSVNLAWNKLTGP--IDG-----FQSP--NSLEEVHL-EKNQIHGTIPSSLFQLCGTIRFDQFSKLK 339 (683)
Q Consensus 270 ~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~-----~~~~--~~L~~L~L-~~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 339 (683)
+..|..+..++.++.+++..+.+... ... +..+ -.++.+++ ..+.+.+.+|. +..++
T Consensus 219 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-------------~~~l~ 285 (606)
T 3vq2_A 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-------------FHCLA 285 (606)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-------------CGGGT
T ss_pred hHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-------------cccCC
Confidence 46777888999999998876544321 110 1111 14566777 55666654442 67789
Q ss_pred CCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCC-ccc
Q 043978 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNN-FLT 418 (683)
Q Consensus 340 ~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~ 418 (683)
+|+.|++++|.+..++ .+..+++|+.|++++|.+..+|. ..+++|+.|++++| .+.
T Consensus 286 ~L~~L~l~~~~~~~l~------~l~~~~~L~~L~l~~n~l~~lp~-----------------~~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 286 NVSAMSLAGVSIKYLE------DVPKHFKWQSLSIIRCQLKQFPT-----------------LDLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp TCSEEEEESCCCCCCC------CCCTTCCCSEEEEESCCCSSCCC-----------------CCCSSCCEEEEESCSSCE
T ss_pred CCCEEEecCccchhhh------hccccccCCEEEcccccCccccc-----------------CCCCccceeeccCCcCcc
Confidence 9999999999977663 45578999999999999877663 26789999999999 444
Q ss_pred ccCCCCCCCceEEeCCCCCCCccC-----CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCC-hhhh
Q 043978 419 HIALHPWKNIRTLDLRNNKIQGSI-----LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIP-PCLG 492 (683)
Q Consensus 419 ~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~ 492 (683)
......+++|+.|++++|.+++.. +..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+.
T Consensus 343 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 556668899999999999998652 2378999999999999985 55889999999999999999986666 3555
Q ss_pred hccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccc-cCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCC
Q 043978 493 NFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEG-SLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLK 571 (683)
Q Consensus 493 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 571 (683)
.+ ++|++|++++|++.+..+..|.++++|+.|++++|++++ ..|..|..+++|++|++++|.+++..|.+|..+++|+
T Consensus 422 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 422 SL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cc-ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 55 499999999999999999999999999999999999987 4788999999999999999999999999999999999
Q ss_pred EEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcch-hhcccccccceeee
Q 043978 572 ILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSME-AMKNVDEQATRLQY 633 (683)
Q Consensus 572 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~-~L~~l~l~~n~~~~ 633 (683)
+|++++|++.+..| ..+..+++|++||+++|+++ .+|.. |..++ +|+.+++++|++.-
T Consensus 501 ~L~Ls~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~-~~p~~-~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 501 LLNMSHNNLLFLDS--SHYNQLYSLSTLDCSFNRIE-TSKGI-LQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EEECCSSCCSCEEG--GGTTTCTTCCEEECTTSCCC-CEESC-GGGSCTTCCEEECCSCCCCC
T ss_pred EEECCCCcCCCcCH--HHccCCCcCCEEECCCCcCc-ccCHh-HhhhcccCcEEEccCCCccc
Confidence 99999999988765 45678999999999999999 67855 88886 59999999999864
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-50 Score=460.91 Aligned_cols=524 Identities=21% Similarity=0.199 Sum_probs=277.5
Q ss_pred CcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCC
Q 043978 7 GNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKL 86 (683)
Q Consensus 7 ~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L 86 (683)
.++++|||++ +.+++..+. +|..+++|++|+|++|.....-.+..|+++++|++|+|++|.+.+..|..|+++++|
T Consensus 24 ~~l~~LdLs~--N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSF--NYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp TTCCEEEEES--CCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCcCEEECCC--CcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 4455555555 555443333 455555555555555533222113445555555555555555555555555555555
Q ss_pred CEEeCCCCcCccccCCHHH--HHccCCCCCEEEcCCccCCcCCh-hhhhcCcCCccEEEcCCCcCCCCCCccCCCC--CC
Q 043978 87 THLGLSCRVLTIEQRTFDL--LASNLTKLSLLHLGSTNLSLIKP-FSLLNLSSTMTDLDLSGTRIQGNFPDQIFLL--PN 161 (683)
Q Consensus 87 ~~L~ls~n~~~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l--~~ 161 (683)
++|++++|.+.. ..+. .+.++++|++|++++|.+.+..+ ..|.++ ++|++|++++|.+.+..+..+..+ ++
T Consensus 100 ~~L~Ls~n~l~~---~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L-~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 100 FELRLYFCGLSD---AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CCEECTTCCCSS---CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC-SSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CEeeCcCCCCCc---ccccCccccccCCCCEEECCCCcccccccchhHhhC-CCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 555555554431 1111 13455555555555555544432 344555 555555555555554444444444 45
Q ss_pred CcEEEccCCCCCcccCC-CCCCCCC------CCEEECCCCcCccccCccccCC---CCCCEEEccCCcccccCCCCCCCC
Q 043978 162 LRVLYLCGNIHLTGYLP-KCNWSSP------LRELDLSLSDFSGEIPYSIGNL---LFLETVDITYCNFMGSIPTSTGNL 231 (683)
Q Consensus 162 L~~L~l~~n~~~~~~~~-~~~~~~~------L~~L~L~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~l 231 (683)
|+.|++++| .+.+..+ .+..+++ |+.|++++|.+.+..+..+... ..++.+.++.+.....
T Consensus 176 L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~-------- 246 (844)
T 3j0a_A 176 LSFFSLAAN-SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG-------- 246 (844)
T ss_dssp SCCCEECCS-BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------
T ss_pred cceEECCCC-ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc--------
Confidence 555555555 3333222 2222222 4555555554444333333221 3344444432211100
Q ss_pred CCCCeeeccCccccccCCccccCC--CCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcC-CCCCCCCCCcEE
Q 043978 232 SKATEILFASNHLTGQLPHHVSGL--LYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSLEEV 308 (683)
Q Consensus 232 ~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~~L~~L 308 (683)
+..+.+.+.....+.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.... ..+..+++|++|
T Consensus 247 -------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 247 -------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp -------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred -------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 00111222222223332 45666666666666555555666666666666666665533 234456666666
Q ss_pred ECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhh
Q 043978 309 HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRN 388 (683)
Q Consensus 309 ~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~ 388 (683)
++++|.+.+..|. .|..+++|+.|++++|.+..++. ..+..+++|+.|++++|.++.++
T Consensus 320 ~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~i~----- 378 (844)
T 3j0a_A 320 NLSYNLLGELYSS------------NFYGLPKVAYIDLQKNHIAIIQD----QTFKFLEKLQTLDLRDNALTTIH----- 378 (844)
T ss_dssp EEESCCCSCCCSC------------SCSSCTTCCEEECCSCCCCCCCS----SCSCSCCCCCEEEEETCCSCCCS-----
T ss_pred ECCCCCCCccCHH------------HhcCCCCCCEEECCCCCCCccCh----hhhcCCCCCCEEECCCCCCCccc-----
Confidence 6666666533333 45566666666666666544432 12345666666666666555432
Q ss_pred ccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCcccc
Q 043978 389 SEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYIC 468 (683)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 468 (683)
.+++|+.|++++|+++.++. ...+++.+++++|++++.. .+..+.
T Consensus 379 --------------~~~~L~~L~l~~N~l~~l~~-~~~~l~~L~ls~N~l~~l~--------------------~~~~~~ 423 (844)
T 3j0a_A 379 --------------FIPSIPDIFLSGNKLVTLPK-INLTANLIHLSENRLENLD--------------------ILYFLL 423 (844)
T ss_dssp --------------SCCSCSEEEEESCCCCCCCC-CCTTCCEEECCSCCCCSST--------------------THHHHT
T ss_pred --------------CCCCcchhccCCCCcccccc-cccccceeecccCccccCc--------------------hhhhhh
Confidence 13455566666655553322 1234445555555444211 112234
Q ss_pred CCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccc-----ccccccccCCCCccEEEcCCCcccccCchhhhcC
Q 043978 469 SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE-----GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKC 543 (683)
Q Consensus 469 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 543 (683)
.+++|+.|++++|++.+..+.......++|+.|++++|.++ +..+..|.++++|+.|+|++|++++..|..|..+
T Consensus 424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 503 (844)
T 3j0a_A 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503 (844)
T ss_dssp TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence 56666666666666653322222222346777777777665 3334567777888888888888887777778888
Q ss_pred CCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhc
Q 043978 544 VKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTS 617 (683)
Q Consensus 544 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~ 617 (683)
++|++|++++|.+++..+..+. ++|+.|++++|++++..|. .+++|+.+++++|++.+.++..+|..
T Consensus 504 ~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~-----~~~~L~~l~l~~Np~~C~c~~~~f~~ 570 (844)
T 3j0a_A 504 TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD-----VFVSLSVLDITHNKFICECELSTFIN 570 (844)
T ss_dssp CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC-----CCSSCCEEEEEEECCCCSSSCCSHHH
T ss_pred hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh-----HhCCcCEEEecCCCcccccccHHHHH
Confidence 8888888888888776666554 7788888888888766552 24577888888888877666444443
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-48 Score=442.62 Aligned_cols=509 Identities=20% Similarity=0.223 Sum_probs=319.9
Q ss_pred CCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCH-HHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCc
Q 043978 60 KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTF-DLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTM 138 (683)
Q Consensus 60 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L 138 (683)
++|++|+|++|.++++.|..|.++++|++|++++|... ..+ |..+.++++|++|++++|.+....|..|..+ ++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l-~~L 99 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL-FHL 99 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC-SSC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC-ccc
Confidence 45555666665555555555556666666666555322 111 2234555566666666666665556666666 666
Q ss_pred cEEEcCCCcCCCCCCcc--CCCCCCCcEEEccCCCCCcccCC--CCCCCCCCCEEECCCCcCccccCccccCC--CCCCE
Q 043978 139 TDLDLSGTRIQGNFPDQ--IFLLPNLRVLYLCGNIHLTGYLP--KCNWSSPLRELDLSLSDFSGEIPYSIGNL--LFLET 212 (683)
Q Consensus 139 ~~L~l~~n~i~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l--~~L~~ 212 (683)
++|++++|.+.+..+.. +..+++|++|++++| .+.+..+ .+..+++|++|++++|.+.+..+..+..+ ++|+.
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 66666666666544433 566666666666666 3333222 35555666666666666655555555555 66666
Q ss_pred EEccCCcccccCCCCCCCCCC------CCeeeccCccccccCCccccCC---CCCCEEEccCCcCcccCCccccCCCCCc
Q 043978 213 VDITYCNFMGSIPTSTGNLSK------ATEILFASNHLTGQLPHHVSGL---LYLTNLDLFGNSLQGKVPSWLFTLPSLV 283 (683)
Q Consensus 213 L~l~~~~~~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 283 (683)
|++++|.+.+..+..++.+++ |++|++++|.+.+..+..+... ..++.+.++.+......
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~----------- 247 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF----------- 247 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS-----------
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc-----------
Confidence 666666666655555554443 6666666665555444444322 34555555433221100
Q ss_pred EEEccCCcccC-cCCCCC--CCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccccccccc
Q 043978 284 SVNLAWNKLTG-PIDGFQ--SPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNI 360 (683)
Q Consensus 284 ~L~L~~n~i~~-~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~ 360 (683)
..+.+.. ....+. ..++|++|++++|.+.+..+. .|..+++|+.|++++|.+..+..
T Consensus 248 ----~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~i~~~~~---- 307 (844)
T 3j0a_A 248 ----GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR------------VFETLKDLKVLNLAYNKINKIAD---- 307 (844)
T ss_dssp ----SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC------------CSSSCCCCCEEEEESCCCCEECT----
T ss_pred ----cccccCCCChhhhhccccCCccEEECCCCcccccChh------------hhhcCCCCCEEECCCCcCCCCCh----
Confidence 0111111 111111 124566666666665533332 45556666666666666554432
Q ss_pred ccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCC
Q 043978 361 DIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNK 437 (683)
Q Consensus 361 ~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~ 437 (683)
..+..+++|++|++++|.+..++. ..+.++++|+.|++++|.+..+.. ..+++|+.|++++|.
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~--------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYS--------------SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCS--------------CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred HHhcCCCCCCEEECCCCCCCccCH--------------HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 223456666666666666554321 112556667777777776665543 345677777777777
Q ss_pred CCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccc-cc
Q 043978 438 IQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHD-TF 516 (683)
Q Consensus 438 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~ 516 (683)
+++... +++|+.|++++|++.. +|.. ..+++.|++++|.+.+.-...+....++|+.|++++|++++..+. .+
T Consensus 374 l~~i~~--~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 374 LTTIHF--IPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp SCCCSS--CCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred CCcccC--CCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 764332 6778888888888873 4433 467999999999998432222222345999999999999876443 56
Q ss_pred cCCCCccEEEcCCCccc-----ccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCcccc
Q 043978 517 ENASNIQSFDLNCNKFE-----GSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTF 591 (683)
Q Consensus 517 ~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 591 (683)
..+++|+.|++++|.++ +..+..|..+++|++|++++|.+++..|..|..+++|+.|+|++|++++..+... .
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~ 525 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--P 525 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC--C
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh--h
Confidence 67899999999999997 3445678899999999999999999899999999999999999999987655322 2
Q ss_pred CCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceee
Q 043978 592 SFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 592 ~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
++|+.||+++|++++..| ..| ..|+.+++++|++.
T Consensus 526 --~~L~~L~Ls~N~l~~~~~-~~~---~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNP-DVF---VSLSVLDITHNKFI 560 (844)
T ss_dssp --SCCCEEEEEEECCCCCCS-CCC---SSCCEEEEEEECCC
T ss_pred --ccccEEECCCCcCCCCCh-hHh---CCcCEEEecCCCcc
Confidence 899999999999998877 334 57899999999875
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=405.19 Aligned_cols=482 Identities=20% Similarity=0.182 Sum_probs=336.9
Q ss_pred CCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEE
Q 043978 86 LTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVL 165 (683)
Q Consensus 86 L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 165 (683)
.++++.++..++..+..+ .+++++|++++|.++.+.+..|..+ ++|++|++++|++.+..+..+..+++|++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l------~~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 81 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL------PFSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (570)
T ss_dssp TTEEECCSSCCSSCCSSS------CSSCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEeCCCCccccCCCc------cccccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCcccccCchhCCEE
Confidence 455666666555333322 2578999999999988888888888 899999999999887777888899999999
Q ss_pred EccCCCCCcccCC-CCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccc-cCCCCCCCCCCCCeeeccCcc
Q 043978 166 YLCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMG-SIPTSTGNLSKATEILFASNH 243 (683)
Q Consensus 166 ~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~ 243 (683)
++++| .+....+ .+..+++|++|++++|.+....+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.
T Consensus 82 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 82 ILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp ECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred eCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 99998 6666554 78888999999999998886555578899999999999998876 468888889999999999999
Q ss_pred ccccCCccccCCCCC----CEEEccCCcCcccCCccccCCCCCcEEEccCCcccC--cCCCCCCCCCCc-----------
Q 043978 244 LTGQLPHHVSGLLYL----TNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG--PIDGFQSPNSLE----------- 306 (683)
Q Consensus 244 l~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~~~~~~L~----------- 306 (683)
+.+..+..++.+++| +++++++|.+.+..+..+... +|+.|++++|.... ....+..+..++
T Consensus 161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred cceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 888777778777777 889999999887777766655 78899888874321 001111223332
Q ss_pred ---------------------EEECCCC-cCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccccccccccccc
Q 043978 307 ---------------------EVHLEKN-QIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKY 364 (683)
Q Consensus 307 ---------------------~L~L~~n-~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~ 364 (683)
.++++++ .+.+..| ..+..+++|+.|++++|.+..++. ...
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~------------~~~~~l~~L~~L~l~~~~l~~l~~-----~~~ 302 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII------------DLFNCLTNVSSFSLVSVTIERVKD-----FSY 302 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST------------TTTGGGTTCSEEEEESCEECSCCB-----CCS
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhch------------hhhcCcCcccEEEecCccchhhhh-----hhc
Confidence 2333322 2222222 245566777777777777655432 223
Q ss_pred CCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC-CCCCCceEEeCCCCCCCccC-
Q 043978 365 SLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL-HPWKNIRTLDLRNNKIQGSI- 442 (683)
Q Consensus 365 ~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~l~~~~- 442 (683)
.+ +|++|++++|.+..+|. ..+++|+.|++++|.+..... ..+++|+.|++++|.+++..
T Consensus 303 ~~-~L~~L~l~~n~~~~l~~-----------------~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 303 NF-GWQHLELVNCKFGQFPT-----------------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp CC-CCSEEEEESCBCSSCCB-----------------CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred cC-CccEEeeccCcccccCc-----------------ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence 44 77777777777766554 345677777777776655433 45677777777777776432
Q ss_pred ----CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccC
Q 043978 443 ----LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFEN 518 (683)
Q Consensus 443 ----~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 518 (683)
+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+...+...++|++|++++|++.+..+..|.+
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 23567777777777777754333 7777777777777777764444222223347777777777777777777777
Q ss_pred CCCccEEEcCCCccc-ccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCc
Q 043978 519 ASNIQSFDLNCNKFE-GSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALR 597 (683)
Q Consensus 519 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 597 (683)
+++|+.|++++|+++ +..|..+..+++|++|++++|.+++..|.+|..+++|++|++++|++++..+ ..+..+++|+
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~ 521 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD--GIFDRLTSLQ 521 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCC
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH--HHhhcccCCc
Confidence 777777777777776 3566777777777777777777777667777777777777777777766543 2345677777
Q ss_pred EEeCCCCcCCCCCcHHH
Q 043978 598 IIDLSRNEFKDFLPRRN 614 (683)
Q Consensus 598 ~L~ls~n~~~~~~p~~~ 614 (683)
+|++++|++++.+|..+
T Consensus 522 ~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 522 KIWLHTNPWDCSCPRID 538 (570)
T ss_dssp EEECCSSCBCCCTTTTH
T ss_pred EEEecCCcccCCCcchH
Confidence 77777777777766433
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.1e-45 Score=399.33 Aligned_cols=478 Identities=18% Similarity=0.169 Sum_probs=246.7
Q ss_pred ccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 35 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
++|++|++++|.+.+. .+..|.++++|++|++++|.+.+..|.+|.++++|++|++++|
T Consensus 26 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-------------------- 84 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-------------------- 84 (549)
T ss_dssp TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS--------------------
T ss_pred CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC--------------------
Confidence 4455555555554433 2344555555555555555555554455555555555555554
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCC-CCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECC
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGN-FPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLS 192 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~ 192 (683)
.+++..+..|+.+ ++|++|++++|.+.+. .|..+..+++|++|++++|.......+ .+..+++|++|+++
T Consensus 85 -------~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 85 -------HLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp -------CCCSCCHHHHTTC-TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred -------ccCccCHHHhccC-CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 4444444444444 5555555555554431 234445555555555555411222111 33334444444444
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccC---CccccCCCCCCEEEccCCcCc
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQL---PHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n~l~ 269 (683)
+|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+.. ......+++|+.|++++|.+.
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 44444334444444444444444444332111111122334444444444433211 011123344555555555444
Q ss_pred ccCCc----cccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEe
Q 043978 270 GKVPS----WLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLD 345 (683)
Q Consensus 270 ~~~~~----~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 345 (683)
+..+. .+..+++|+.+++++|.+.+.... + ......+..+++|+.++
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~---------------------~--------~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDF---------------------N--------PSESDVVSELGKVETVT 287 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC---------------------C--------CCTTTCCCCCTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccc---------------------c--------ccchhhhhhhccccccc
Confidence 32221 122344445555554443321100 0 00011234455666666
Q ss_pred CCCCCccccccccccc-cccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccC---
Q 043978 346 LSNNNLLSFTSSGNID-IKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA--- 421 (683)
Q Consensus 346 l~~n~l~~l~~~~~~~-~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--- 421 (683)
+.++.+.......... .....++|+.|++++|.+..+|..+. ..+++|+.|++++|.+++..
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~--------------~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS--------------QHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH--------------HHCTTCCEEECCSSCCCHHHHHH
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH--------------hcCccccEEEccCCccccccccc
Confidence 6665533321110000 01134567777777777777665432 34677777777777766532
Q ss_pred ---CCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCC--ccccCCCCCCEEEcCCCcCCCCCChhhhhccC
Q 043978 422 ---LHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIP--PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT 496 (683)
Q Consensus 422 ---~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 496 (683)
...+++|+.|++++|++++ ..+ ..+..+++|++|++++|+++ .+|..+....
T Consensus 354 ~~~~~~l~~L~~L~Ls~N~l~~---------------------~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~- 410 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQNHLRS---------------------MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE- 410 (549)
T ss_dssp HTCTTSSTTCCEEECTTSCCCC---------------------HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT-
T ss_pred hhhhhccccCcEEEccCCcccc---------------------cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc-
Confidence 2345555566555555542 211 34666777777777777776 5666554443
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
+|++|++++|++++..... .++|+.|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|++|+++
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp TCCEEECTTSCCSCCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECC
T ss_pred cccEEECCCCCcccccchh---cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecC
Confidence 7777777777776433222 247788888888777532 46778888888888887 4554 3567888888888
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcH-HHHhcc
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPR-RNFTSM 618 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~-~~~~~~ 618 (683)
+|++++..+ ..+..+++|++|++++|++.+.+|. .++..+
T Consensus 482 ~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~ 522 (549)
T 2z81_A 482 RNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522 (549)
T ss_dssp SSCCCCCCT--TGGGGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred CCccCCcCH--HHHhcCcccCEEEecCCCccCCCccHHHHHHH
Confidence 888876654 3356778888888888888887773 344333
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-44 Score=398.21 Aligned_cols=488 Identities=20% Similarity=0.180 Sum_probs=303.1
Q ss_pred ccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 35 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
+++++|++++|.+... .+..|.++++|++|++++|.++++.+.+|+++++|++|++++|.+.... +..+.++++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~ 103 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA---LGAFSGLSSLQ 103 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC---TTTTTTCTTCC
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC---HhhhcCccccc
Confidence 4677888888777654 3556777788888888888777777777777788888888777765322 23356777777
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCC-CCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCC----CE
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQG-NFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPL----RE 188 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L----~~ 188 (683)
+|++++|.+....+..++.+ ++|++|++++|.+.+ .+|..+.++++|++|++++| .+....+ .+..+++| +.
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccCCCcccccc-ccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhh
Confidence 77777777776655566777 777777777777765 35666777777777777776 4443332 34444444 56
Q ss_pred EECCCCcCccccCccccCCCCCCEEEccCCcccc-cCCCCCCCCCCCCeeeccCccc------cccCCccccCCC--CCC
Q 043978 189 LDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMG-SIPTSTGNLSKATEILFASNHL------TGQLPHHVSGLL--YLT 259 (683)
Q Consensus 189 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l------~~~~~~~l~~l~--~L~ 259 (683)
+++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.++...+....+ .......+..+. .++
T Consensus 182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 6666666665555444443 56666666553221 1122233334443333321111 111111111111 134
Q ss_pred EEEccCC-cCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCC
Q 043978 260 NLDLFGN-SLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKL 338 (683)
Q Consensus 260 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l 338 (683)
.++++++ .+.+..+..+..+++|+.|++++|.+......+..+ +|++|++++|.+. .+|. ..+
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--------------~~l 324 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--------------LKL 324 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--------------CBC
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--------------ccc
Confidence 4444444 344444555555555555555555555433333344 5555555555544 2221 234
Q ss_pred CCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCccc
Q 043978 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT 418 (683)
Q Consensus 339 ~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 418 (683)
++|+.|++++|.+.... ....+++|++|++++|.+...+.. +
T Consensus 325 ~~L~~L~l~~n~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~-----------~--------------------- 366 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAF------SEVDLPSLEFLDLSRNGLSFKGCC-----------S--------------------- 366 (570)
T ss_dssp SSCCEEEEESCBSCCBC------CCCBCTTCCEEECCSSCCBEEEEE-----------E---------------------
T ss_pred cccCEEeCcCCcccccc------ccccCCCCCEEeCcCCccCccccc-----------c---------------------
Confidence 44555555555432211 012344444444444444322100 0
Q ss_pred ccCCCCCCCceEEeCCCCCCCccC--CCCCCCCcEEEccCCcccCCCC-ccccCCCCCCEEEcCCCcCCCCCChhhhhcc
Q 043978 419 HIALHPWKNIRTLDLRNNKIQGSI--LVPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKYLSLSHNNLSGTIPPCLGNFT 495 (683)
Q Consensus 419 ~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 495 (683)
..+..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+.
T Consensus 367 -~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 367 -QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp -HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred -ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 00123445555555555444322 2345667777777777776555 5688899999999999999866776666665
Q ss_pred CcccEEECCCCccc-ccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEE
Q 043978 496 TQLITLHLKNNSLE-GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILI 574 (683)
Q Consensus 496 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 574 (683)
+|++|++++|++. +..|..|..+++|+.|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|+
T Consensus 446 -~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 446 -SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp -TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred -cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence 9999999999987 56788999999999999999999988899999999999999999999988888899999999999
Q ss_pred ccCCcCcccCC
Q 043978 575 LRSNRFYGPLC 585 (683)
Q Consensus 575 l~~n~l~~~~~ 585 (683)
+++|++.+..+
T Consensus 525 l~~N~~~~~~~ 535 (570)
T 2z63_A 525 LHTNPWDCSCP 535 (570)
T ss_dssp CCSSCBCCCTT
T ss_pred ecCCcccCCCc
Confidence 99999987654
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.7e-45 Score=397.73 Aligned_cols=491 Identities=17% Similarity=0.188 Sum_probs=310.2
Q ss_pred CCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEE
Q 043978 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDL 141 (683)
Q Consensus 62 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L 141 (683)
..+.+.+++.++.+ |..+. ++|++|++++|.++... +..+.++++|++|++++|.+.+..+..|..+ ++|++|
T Consensus 7 ~~~c~~~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L 79 (549)
T 2z81_A 7 SGVCDGRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIG---HGDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHL 79 (549)
T ss_dssp TSEEECTTSCCSSC-CSCCC--TTCCEEECCSSCCCEEC---SSTTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEE
T ss_pred CceEECCCCccccc-cccCC--CCccEEECcCCccCccC---hhhhhcCCcccEEECCCCCcCccChhhcccc-ccCCEE
Confidence 33456677777655 33332 67777777777665322 2235667777777777777776666666666 677777
Q ss_pred EcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCccc
Q 043978 142 DLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFM 221 (683)
Q Consensus 142 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 221 (683)
++++|++.+..+..++.+++|++|++++| .+... ..|..+.++++|++|++++|.+.
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~----------------------~~~~~~~~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTL----------------------GVTSLFPNLTNLQTLRIGNVETF 136 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSS----------------------CSSCSCTTCTTCCEEEEEESSSC
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCC-ccccc----------------------chhhhhhccCCccEEECCCCccc
Confidence 77777776555555666666666666666 33321 12334444555555555555422
Q ss_pred ccC-CCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcC----
Q 043978 222 GSI-PTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI---- 296 (683)
Q Consensus 222 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~---- 296 (683)
+.+ +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|++.+..
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 216 (549)
T 2z81_A 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216 (549)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC
T ss_pred cccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccccc
Confidence 222 234555555555555555555555555555555666666655554222222234566666666666665421
Q ss_pred CCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccccccc--ccccccCCCCccEEEc
Q 043978 297 DGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSG--NIDIKYSLPSLLKLSF 374 (683)
Q Consensus 297 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~~~~~~~~L~~L~l 374 (683)
+....+++|+.|++++|.+.+..+..+.. .+..+++|+.+++++|.+..+.... .......+++++.|++
T Consensus 217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 217 PVDEVSSPMKKLAFRGSVLTDESFNELLK--------LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp SSCCCCCCCCEEEEESCEEEHHHHHHHHG--------GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred chhhhhhcccceeccccccchhHHHHHHH--------Hhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 11225677888888888776544443322 3456778888888888765542211 1122346677788888
Q ss_pred ccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEc
Q 043978 375 SNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLV 454 (683)
Q Consensus 375 ~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 454 (683)
.++.+.....+ ..++. .+...++|+.|++++|.++.++... +..+++|++|++
T Consensus 289 ~~~~i~~~~~~--------~~l~~-~~~~~~~L~~L~l~~n~l~~ip~~~------------------~~~l~~L~~L~L 341 (549)
T 2z81_A 289 RRLHIPQFYLF--------YDLST-VYSLLEKVKRITVENSKVFLVPCSF------------------SQHLKSLEFLDL 341 (549)
T ss_dssp ESCBCSCGGGS--------CCCCH-HHHHSTTCCEEEEESSCCCCCCHHH------------------HHHCTTCCEEEC
T ss_pred cccccchhhhc--------ccchh-hhhhcccceEEEeccCccccCCHHH------------------HhcCccccEEEc
Confidence 77765543211 00000 0122345666666665555433210 012445555555
Q ss_pred cCCcccCCCC---ccccCCCCCCEEEcCCCcCCCCCC---hhhhhccCcccEEECCCCcccccccccccCCCCccEEEcC
Q 043978 455 SNNKLSGQIP---PYICSLSSLKYLSLSHNNLSGTIP---PCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLN 528 (683)
Q Consensus 455 ~~n~i~~~~~---~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 528 (683)
++|.+.+..| ..+..+++|++|++++|.++ .++ ..+..+ ++|++|++++|+++ ..|..+..+++|+.|+++
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECT
T ss_pred cCCccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccccccEEECC
Confidence 5555554432 34678899999999999998 444 234554 49999999999998 467788899999999999
Q ss_pred CCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCC
Q 043978 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 529 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
+|++++ +|..+ .++|++|++++|.+++.. ..+++|++|++++|++. .+|. ...+++|++||+++|++++
T Consensus 419 ~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~---~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 419 STGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD---ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC---GGGCTTCCEEECCSSCCCC
T ss_pred CCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC---cccCccCCEEecCCCccCC
Confidence 999984 44443 268999999999998642 57899999999999998 4443 3568999999999999997
Q ss_pred CCcHHHHhcchhhcccccccceee
Q 043978 609 FLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 609 ~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
..| ..|..+++|+.+++++|++.
T Consensus 488 ~~~-~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 488 VPD-GIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCT-TGGGGCTTCCEEECCSSCBC
T ss_pred cCH-HHHhcCcccCEEEecCCCcc
Confidence 555 78999999999999999975
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-45 Score=408.62 Aligned_cols=469 Identities=19% Similarity=0.257 Sum_probs=274.5
Q ss_pred CCCCCCcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCC-----------CCCcccCCCCCCCEEeCCCC
Q 043978 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGS-----------RISPEFGRLKELTYLNPSFS 70 (683)
Q Consensus 2 c~~~~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~-----------~~~~~~~~l~~L~~L~Ls~~ 70 (683)
|+. .++|+.|+|++ +.+.|.+++ ++.++++|++|+|++|.+... .+|... +..|+ ++++++
T Consensus 77 C~~-~~~V~~L~L~~--~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~ 148 (636)
T 4eco_A 77 LNS-NGRVTGLSLEG--FGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKT 148 (636)
T ss_dssp ECT-TCCEEEEECTT--SCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHH
T ss_pred EcC-CCCEEEEEecC--cccCCcCCh--HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHh
Confidence 654 37999999999 899999987 899999999999999864111 122221 33455 666666
Q ss_pred CCCCCCCccCcC-CCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcC--CccCCcCChhhhhcCcCCccEEEcCCCc
Q 043978 71 NFGGLVPSEISH-LSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLG--STNLSLIKPFSLLNLSSTMTDLDLSGTR 147 (683)
Q Consensus 71 ~~~~~~~~~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~~L~~L~l~~n~ 147 (683)
.+.+.+|..+.. +..+..+++....+.. .....++.+.+. .|.+++ .|..++++ ++|++|++++|.
T Consensus 149 ~l~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l-~~L~~L~Ls~n~ 217 (636)
T 4eco_A 149 FVDYDPREDFSDLIKDCINSDPQQKSIKK---------SSRITLKDTQIGQLSNNITF-VSKAVMRL-TKLRQFYMGNSP 217 (636)
T ss_dssp HTCCCGGGGSCHHHHHHHHHCTTSCCCCC---------CCCCCCCTTTTTCCSCEEEE-ECGGGGGC-TTCCEEEEESCC
T ss_pred hhccCchhhHHHHHHHHhhcCcccccccc---------ccccchhhhhhccccCCCcc-CCHHHhcc-cCCCEEECcCCc
Confidence 666555555442 1122222222111110 111222222232 356666 46677777 788888888888
Q ss_pred CCCC-----------------CCccCC--CCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCc-Ccc-ccCcccc
Q 043978 148 IQGN-----------------FPDQIF--LLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSD-FSG-EIPYSIG 205 (683)
Q Consensus 148 i~~~-----------------~~~~l~--~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~-~~~-~~~~~~~ 205 (683)
+++. +|..++ ++++|++|++++| .+.+.+| .+..+++|++|++++|. +++ .+|..+.
T Consensus 218 l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~ 296 (636)
T 4eco_A 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296 (636)
T ss_dssp CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred cccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH
Confidence 7764 777777 7888888888877 5555555 67777777788887777 766 6777666
Q ss_pred CC------CCCCEEEccCCcccccCCC--CCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCcccc
Q 043978 206 NL------LFLETVDITYCNFMGSIPT--STGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF 277 (683)
Q Consensus 206 ~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 277 (683)
.+ ++|++|++++|.+. .+|. .++.+++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+.
T Consensus 297 ~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~ 373 (636)
T 4eco_A 297 ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFC 373 (636)
T ss_dssp HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSE
T ss_pred hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhh
Confidence 65 77888888888777 6676 77777778888887777776666 6777777777788777777 6677777
Q ss_pred CCCC-CcEEEccCCcccCcCCCCCC--CCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccc
Q 043978 278 TLPS-LVSVNLAWNKLTGPIDGFQS--PNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSF 354 (683)
Q Consensus 278 ~l~~-L~~L~L~~n~i~~~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 354 (683)
.+++ |+.|++++|.++..+..+.. +++|++|++++|.+.+.+|.. +... .
T Consensus 374 ~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~------------l~~~-----------~---- 426 (636)
T 4eco_A 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN------------FDPL-----------D---- 426 (636)
T ss_dssp EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS------------SCTT-----------C----
T ss_pred hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh------------hccc-----------c----
Confidence 7777 77777777777754444443 336777777777776655542 2200 0
Q ss_pred ccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCC
Q 043978 355 TSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLR 434 (683)
Q Consensus 355 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~ 434 (683)
.....+++|+.|++++|.+..+|..+ +..+++|+.|++++|.++.++...+..+
T Consensus 427 ------~~~~~~~~L~~L~Ls~N~l~~lp~~~--------------~~~l~~L~~L~Ls~N~l~~i~~~~~~~~------ 480 (636)
T 4eco_A 427 ------PTPFKGINVSSINLSNNQISKFPKEL--------------FSTGSPLSSINLMGNMLTEIPKNSLKDE------ 480 (636)
T ss_dssp ------SSCCCCCCEEEEECCSSCCCSCCTHH--------------HHTTCCCSEEECCSSCCSBCCSSSSEET------
T ss_pred ------cccccCCCCCEEECcCCccCcCCHHH--------------HccCCCCCEEECCCCCCCCcCHHHhccc------
Confidence 00002334444444444444444322 1334555555555555543322211100
Q ss_pred CCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhh--hccCcccEEECCCCcccccc
Q 043978 435 NNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLG--NFTTQLITLHLKNNSLEGHI 512 (683)
Q Consensus 435 ~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~ 512 (683)
...+.++++|+.|++++|.++ .+|..++ .+. +|+.|++++|++++ +
T Consensus 481 -----------------------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-i 528 (636)
T 4eco_A 481 -----------------------------NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-F 528 (636)
T ss_dssp -----------------------------TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-C
T ss_pred -----------------------------cccccccCCccEEECcCCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-c
Confidence 001112224444444444444 3444433 222 44444444444443 3
Q ss_pred cccccCCCCccEEEc------CCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 043978 513 HDTFENASNIQSFDL------NCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 513 ~~~~~~l~~L~~L~L------~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 581 (683)
|..+..+++|+.|++ ++|++.+..|..+..+++|++|++++|.+. .+|..+. ++|+.|++++|++.
T Consensus 529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 334444444444444 456666666666666666666666666663 4455443 56666666666654
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=386.23 Aligned_cols=471 Identities=17% Similarity=0.166 Sum_probs=276.1
Q ss_pred CEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEE
Q 043978 63 TYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLD 142 (683)
Q Consensus 63 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~ 142 (683)
++|++++|.++.+ |..+. ++|++|++++|.+. ...+..+.++++|++|++++|.+++..|..|..+ ++|++|+
T Consensus 3 ~~l~ls~n~l~~i-p~~~~--~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIHV-PKDLS--QKTTILNISQNYIS---ELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELEYLD 75 (520)
T ss_dssp CEEECTTSCCSSC-CCSCC--TTCSEEECCSSCCC---CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCCEEE
T ss_pred ceEecCCCCcccc-ccccc--ccccEEECCCCccc---ccChhhccccccccEEecCCCccCCcChHHhhcc-cCCCEEe
Confidence 4677777777754 44443 67777777777665 2233445666666666666666666555566666 6666666
Q ss_pred cCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCcc-ccCccccCCCCCCEEEccCCccc
Q 043978 143 LSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSG-EIPYSIGNLLFLETVDITYCNFM 221 (683)
Q Consensus 143 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 221 (683)
+++|+++ .+|.. .+++|++|++++| .+.+ .+|..++.+++|++|++++|.+.
T Consensus 76 Ls~N~l~-~lp~~--~l~~L~~L~L~~N------------------------~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 76 LSHNKLV-KISCH--PTVNLKHLDLSFN------------------------AFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCSSCCC-EEECC--CCCCCSEEECCSS------------------------CCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCCcee-ecCcc--ccCCccEEeccCC------------------------ccccccchhhhccCCcceEEEecCcccc
Confidence 6666655 23332 4555555555554 4433 23445555555555555555544
Q ss_pred ccCCCCCCCCCCC--CeeeccCccc--cccCCccccCCC-CCCEEEccCCcCcccCCc-cccCCCCCcEEEccCCc----
Q 043978 222 GSIPTSTGNLSKA--TEILFASNHL--TGQLPHHVSGLL-YLTNLDLFGNSLQGKVPS-WLFTLPSLVSVNLAWNK---- 291 (683)
Q Consensus 222 ~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~---- 291 (683)
+ ..+..+++| ++|++++|.+ .+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|.
T Consensus 129 ~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 205 (520)
T 2z7x_B 129 K---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205 (520)
T ss_dssp G---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT
T ss_pred h---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc
Confidence 3 223334444 5555555544 333444333332 122334444444332222 23344555555555543
Q ss_pred ---ccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcc-ccccccccccccCCC
Q 043978 292 ---LTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL-SFTSSGNIDIKYSLP 367 (683)
Q Consensus 292 ---i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~~~~~ 367 (683)
+.+.++.+..+++|+.|++++|.+.+..+..+.. . ...++|++|++++|.+. .++..........++
T Consensus 206 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~--------~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ--------L-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp THHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH--------H-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred cceeecchhhhccccchhhccccccccCHHHHHHHHH--------H-hhhCcccEEEeecccccCccccchhhcccccCc
Confidence 2222223334445555555554443221111100 0 01234555555555543 221110000013455
Q ss_pred CccEEEcccCCCCCcC-hhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCC
Q 043978 368 SLLKLSFSNCNVSEFP-SFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPP 446 (683)
Q Consensus 368 ~L~~L~l~~~~l~~~p-~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 446 (683)
.|+.+++++|.+ .+| .++... ....+|+.|++++|.+..... +..+
T Consensus 277 ~L~~l~l~~n~~-~~p~~~~~~~------------~~~~~L~~L~l~~n~l~~~~~--------------------~~~l 323 (520)
T 2z7x_B 277 ALSIHQVVSDVF-GFPQSYIYEI------------FSNMNIKNFTVSGTRMVHMLC--------------------PSKI 323 (520)
T ss_dssp EEEEEEEEECCC-CSCTHHHHHH------------HHTCCCSEEEEESSCCCCCCC--------------------CSSC
T ss_pred eeEeccccccce-ecchhhhhcc------------cccCceeEEEcCCCccccccc--------------------hhhC
Confidence 555555555555 444 111100 011234455555444433221 1355
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCC--CCChhhhhccCcccEEECCCCcccc-cccccccCCCCcc
Q 043978 447 PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSG--TIPPCLGNFTTQLITLHLKNNSLEG-HIHDTFENASNIQ 523 (683)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 523 (683)
++|++|++++|.+.+..|..+..+++|++|++++|++.+ .+|..+..+. +|++|++++|++.+ .....|..+++|+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCC
Confidence 666777777777777778889999999999999999984 3445566655 99999999999998 5555688999999
Q ss_pred EEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCC
Q 043978 524 SFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSR 603 (683)
Q Consensus 524 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 603 (683)
.|++++|++++..|..+. ++|++|++++|+++ .+|.++..+++|++|++++|++.. +|.. .+..+++|++|++++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDG-IFDRLTSLQKIWLHT 477 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTT-TTTTCTTCCEEECCS
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHH-HhccCCcccEEECcC
Confidence 999999999877766554 79999999999998 677777799999999999999985 4422 467889999999999
Q ss_pred CcCCCCCcHHHH-hcc
Q 043978 604 NEFKDFLPRRNF-TSM 618 (683)
Q Consensus 604 n~~~~~~p~~~~-~~~ 618 (683)
|++.+.++..+| ..+
T Consensus 478 N~~~c~c~~~~~~~~~ 493 (520)
T 2z7x_B 478 NPWDCSCPRIDYLSRW 493 (520)
T ss_dssp SCBCCCHHHHHHHHHH
T ss_pred CCCcccCCchHHHHHH
Confidence 999988886666 444
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2e-41 Score=378.82 Aligned_cols=512 Identities=21% Similarity=0.170 Sum_probs=352.8
Q ss_pred CCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccE
Q 043978 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTD 140 (683)
Q Consensus 61 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~ 140 (683)
.+++|||++|.++++.+.+|.++++|++|++++|.++..+. ..+.++++|++|+|++|.++...+..|.++ ++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L-~~L~~ 128 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILTGNPIQSLALGAFSGL-SSLQK 128 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCCEECGGGGTTC-TTCCE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh---hHhcCCCCCCEEEccCCcCCCCCHHHhcCC-CCCCE
Confidence 56677777777766666667777777777777766653222 124666777777777777766666667777 77777
Q ss_pred EEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcc-cCC-CCCCCCCCCEEECCCCcCccccCccccCCCC----CCEEE
Q 043978 141 LDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTG-YLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLF----LETVD 214 (683)
Q Consensus 141 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~----L~~L~ 214 (683)
|++++|++++..+..++.+++|++|++++| .+.. ..+ .+..+++|++|++++|.+.+..+..+..+.+ ...++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 777777777655556677777777777777 4332 223 4556677777777777776655555554433 33577
Q ss_pred ccCCcccccCCCCCCCCCCCCeeeccCccccc-cCCccccCCCCCCEEEccCCcC------cccCCccccCCCCCcEEEc
Q 043978 215 ITYCNFMGSIPTSTGNLSKATEILFASNHLTG-QLPHHVSGLLYLTNLDLFGNSL------QGKVPSWLFTLPSLVSVNL 287 (683)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l------~~~~~~~l~~l~~L~~L~L 287 (683)
++.|.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+.. .......+.....+...++
T Consensus 208 ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 208 LSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp CTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred cccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 77777764444333 33445666666664332 2233455666666555543221 2222233334445555555
Q ss_pred cCCcccC----cCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccc
Q 043978 288 AWNKLTG----PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK 363 (683)
Q Consensus 288 ~~n~i~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 363 (683)
..+.... ....+....+++.+.+.++.+... ..+.....++.|++.+|.+..++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~~~~~~~------- 345 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--------------KDFSYNFGWQHLELVNCKFGQFPT------- 345 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--------------GGGGSCCCCSEEEEESCEESSCCC-------
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccc--------------cccccchhhhhhhcccccccCcCc-------
Confidence 4433221 233344566778888777766521 134556778888888887654422
Q ss_pred cCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC-----CCCCCceEEeCCCCCC
Q 043978 364 YSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL-----HPWKNIRTLDLRNNKI 438 (683)
Q Consensus 364 ~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-----~~~~~L~~L~l~~n~l 438 (683)
..++.|+.+++..+.+...+.. ..+++|+.+++++|.+..... ....+++.++++.+.+
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~~----------------~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~ 409 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFSE----------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV 409 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCCC----------------CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE
T ss_pred ccchhhhhcccccccCCCCccc----------------ccccccccchhhccccccccccccchhhhhhhhhhhcccccc
Confidence 2567788888888766543332 567888999999888765422 2567888999988876
Q ss_pred Ccc--CCCCCCCCcEEEccCCcccCCCC-ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcc-cccccc
Q 043978 439 QGS--ILVPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSL-EGHIHD 514 (683)
Q Consensus 439 ~~~--~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~ 514 (683)
... .+..+++|+.++++.++.....+ ..+..+++++.+++++|.+.+..+..+.. .++|+.|++++|.+ ....|.
T Consensus 410 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-~~~L~~L~Ls~N~~~~~~~~~ 488 (635)
T 4g8a_A 410 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPD 488 (635)
T ss_dssp EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECS
T ss_pred ccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc-chhhhhhhhhhcccccccCch
Confidence 643 34467889999999888765544 56888999999999999998555554444 45999999999974 456788
Q ss_pred cccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCC-
Q 043978 515 TFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSF- 593 (683)
Q Consensus 515 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l- 593 (683)
.|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|+.+++|++|++++|++++..+. .+..+
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~~l~ 566 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ--ELQHFP 566 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS--CTTCCC
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH--HHHhhh
Confidence 999999999999999999999999999999999999999999998888999999999999999999987663 34555
Q ss_pred CCCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 594 QALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 594 ~~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
++|++|++++|++.+.+.-.+|..|
T Consensus 567 ~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 567 SSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp TTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred CcCCEEEeeCCCCcccCCcHHHHHH
Confidence 6899999999999998887777654
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.1e-44 Score=397.71 Aligned_cols=465 Identities=21% Similarity=0.231 Sum_probs=321.6
Q ss_pred CCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCcccc---------CCHHHHHccCCCCCEEEcCCccCCcCChhh
Q 043978 60 KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQ---------RTFDLLASNLTKLSLLHLGSTNLSLIKPFS 130 (683)
Q Consensus 60 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 130 (683)
.+++.|+|+++.+.+.+|.+++++++|++|++++|.+.... ..+|... +..|+ ++++.+.+.+..+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 47888999998888888888999999999999888652111 0222222 34455 666666666555554
Q ss_pred hhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEcc--CCCCCcccCCCCCCCCCCCEEECCCCcCccc---------
Q 043978 131 LLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLC--GNIHLTGYLPKCNWSSPLRELDLSLSDFSGE--------- 199 (683)
Q Consensus 131 l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~--~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--------- 199 (683)
+..+...+..+++....+.. .....++.+.+. .| .+++..+.+..+++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n-~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSN-NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSC-EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccC-CCccCCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 44332333333333222211 011112222222 22 3444222556666666666666666653
Q ss_pred --------cCcccc--CCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCcc-ccc-cCCccccCC------CCCCEE
Q 043978 200 --------IPYSIG--NLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNH-LTG-QLPHHVSGL------LYLTNL 261 (683)
Q Consensus 200 --------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L 261 (683)
+|..+. ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 888888 99999999999999988899999999999999999998 887 778777766 899999
Q ss_pred EccCCcCcccCCc--cccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCC
Q 043978 262 DLFGNSLQGKVPS--WLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLK 339 (683)
Q Consensus 262 ~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 339 (683)
++++|.++ .+|. .+..+++|+.|++++|.+.+.++.+..+++|++|++++|.+. .+|. .+..++
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~------------~l~~l~ 376 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPA------------NFCGFT 376 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCT------------TSEEEC
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccH------------hhhhhc
Confidence 99999998 7888 899999999999999999854557778889999999999887 6665 456677
Q ss_pred C-CCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCccc
Q 043978 340 N-LQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT 418 (683)
Q Consensus 340 ~-L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 418 (683)
+ |++|++++|.++.++.. +.. ..+++|+.|++++|.++
T Consensus 377 ~~L~~L~Ls~N~l~~lp~~-----~~~------------------------------------~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 377 EQVENLSFAHNKLKYIPNI-----FDA------------------------------------KSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp TTCCEEECCSSCCSSCCSC-----CCT------------------------------------TCSSCEEEEECCSSCTT
T ss_pred ccCcEEEccCCcCcccchh-----hhh------------------------------------cccCccCEEECcCCcCC
Confidence 7 88888888876544321 111 11223444444444443
Q ss_pred ccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccC--
Q 043978 419 HIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT-- 496 (683)
Q Consensus 419 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~-- 496 (683)
+..+..+... .......++|++|++++|.+....+..+..+++|++|++++|.+. .+|...+....
T Consensus 416 ~~~p~~l~~~-----------~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~ 483 (636)
T 4eco_A 416 SVDGKNFDPL-----------DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENEN 483 (636)
T ss_dssp TTTTCSSCTT-----------CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEE
T ss_pred Ccchhhhccc-----------ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccc
Confidence 3222111100 000001234455555555555444455667899999999999998 78876655433
Q ss_pred -----cccEEECCCCccccccccccc--CCCCccEEEcCCCcccccCchhhhcCCCCcEEEc------cCCcCCccCCcc
Q 043978 497 -----QLITLHLKNNSLEGHIHDTFE--NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNV------GNNMINDTFPCW 563 (683)
Q Consensus 497 -----~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l------~~n~l~~~~~~~ 563 (683)
+|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|++ ++|.+.+.+|.+
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 8999999999999 4556665 89999999999999996 7888999999999999 567788889999
Q ss_pred ccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCC
Q 043978 564 LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 564 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
+..+++|++|++++|++ +.+|... . ++|++||+++|++..
T Consensus 562 l~~l~~L~~L~Ls~N~l-~~ip~~~--~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI-RKVNEKI--T--PNISVLDIKDNPNIS 601 (636)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCC--C--TTCCEEECCSCTTCE
T ss_pred HhcCCCCCEEECCCCcC-CccCHhH--h--CcCCEEECcCCCCcc
Confidence 99999999999999999 5555432 2 799999999998874
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-43 Score=397.00 Aligned_cols=447 Identities=19% Similarity=0.275 Sum_probs=274.1
Q ss_pred CCCCCCcEEEEECCCCCCCcceeecCCCcccccccCCeeeC-CCCCCCCCCCCcccCCCCC---CC-----EEe------
Q 043978 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNL-AFNNFLGSRISPEFGRLKE---LT-----YLN------ 66 (683)
Q Consensus 2 c~~~~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L-s~n~~~~~~~~~~~~~l~~---L~-----~L~------ 66 (683)
|+. +++|+.|+|++ +.+.|.+++ ++.++++|++|+| ++|.+.+. .+ +..... +. .+.
T Consensus 319 C~~-~~~V~~L~Ls~--~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~--~~~~~~~~~l~~~~l~~lr~~~~~~ 390 (876)
T 4ecn_A 319 LDN-NGRVTGLSLAG--FGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RL--FGDEELTPDMSEERKHRIRMHYKKM 390 (876)
T ss_dssp ECT-TSCEEEEECTT--TCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TC--BTTBCCCSSCCHHHHHHHHTHHHHH
T ss_pred ecC-CCCEEEEECcc--CCCCCcCch--HHhccccceEeeeccccccccc-cc--ccccccccccchhHHHHHHHhhhhh
Confidence 543 58999999999 999999998 9999999999999 77765433 11 110000 00 000
Q ss_pred ---C-CCCCCCC-----------CCCccCcCCCCCCEEeCCC--CcCccccCCHHHHHccCCCCCEEEcCCccCCc----
Q 043978 67 ---P-SFSNFGG-----------LVPSEISHLSKLTHLGLSC--RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSL---- 125 (683)
Q Consensus 67 ---L-s~~~~~~-----------~~~~~~~~l~~L~~L~ls~--n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---- 125 (683)
. ....+.+ ..+........++.+.+.. |.++ + +|..+.++++|++|++++|.+++
T Consensus 391 ~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~---~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~ 466 (876)
T 4ecn_A 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT---F-ISKAIQRLTKLQIIYFANSPFTYDNIA 466 (876)
T ss_dssp HTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEE---E-ECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred hhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCccc---c-hhHHHhcCCCCCEEECcCCcCCCCccc
Confidence 0 0000000 0000111122233333332 3443 1 55566777777777777777776
Q ss_pred -------------CChhhhh--cCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcc-cCC--------CCC
Q 043978 126 -------------IKPFSLL--NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTG-YLP--------KCN 181 (683)
Q Consensus 126 -------------~~~~~l~--~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~--------~~~ 181 (683)
..|..++ ++ ++|++|++++|.+.+.+|..+..+++|++|++++|..+.+ .+| .+.
T Consensus 467 ~~~~~~s~n~~~g~iP~~l~f~~L-~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~ 545 (876)
T 4ecn_A 467 VDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545 (876)
T ss_dssp SSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred ccccccccccccccCChhhhhccC-CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence 2566665 78 8888888888888888888888888888888888832554 333 334
Q ss_pred CCCCCCEEECCCCcCccccCc--cccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCC-C
Q 043978 182 WSSPLRELDLSLSDFSGEIPY--SIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLY-L 258 (683)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L 258 (683)
.+++|+.|++++|.+. .+|. .+.++++|+.|++++|.+. .+| .++.+++|+.|++++|.+. .+|..+..+++ |
T Consensus 546 ~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L 621 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV 621 (876)
T ss_dssp TTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTC
T ss_pred ccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccC
Confidence 5568888888888888 7787 8888888888888888888 666 7888888888888888888 67777888888 8
Q ss_pred CEEEccCCcCcccCCccccCCCC--CcEEEccCCcccCcCCCCC------CCCCCcEEECCCCcCcccCCccchhccCcc
Q 043978 259 TNLDLFGNSLQGKVPSWLFTLPS--LVSVNLAWNKLTGPIDGFQ------SPNSLEEVHLEKNQIHGTIPSSLFQLCGTI 330 (683)
Q Consensus 259 ~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~i~~~~~~~~------~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~ 330 (683)
++|++++|.+. .+|..+..++. |+.|++++|.+.+.++.+. ..++|+.|++++|.+. .+|..
T Consensus 622 ~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~-------- 691 (876)
T 4ecn_A 622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTE-------- 691 (876)
T ss_dssp CEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHH--------
T ss_pred CEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHH--------
Confidence 88888888888 67777666543 8888888888776444332 3447777777777776 44442
Q ss_pred cccccCCCCCCCEEeCCCCCcccccccccccc---ccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcC
Q 043978 331 RFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDI---KYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSL 407 (683)
Q Consensus 331 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~---~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L 407 (683)
.+..+++|+.|++++|.+..++....... ...+++|+.|++++|++..+|..+.. ..+++|
T Consensus 692 ---~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~-------------~~l~~L 755 (876)
T 4ecn_A 692 ---LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA-------------TTLPYL 755 (876)
T ss_dssp ---HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST-------------TTCTTC
T ss_pred ---HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh-------------ccCCCc
Confidence 23466777777777777665543211110 11233666666666666655543210 144555
Q ss_pred cEEECCCCcccccCC--CCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCC
Q 043978 408 IDLDLSNNFLTHIAL--HPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSG 485 (683)
Q Consensus 408 ~~L~l~~n~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~ 485 (683)
+.|++++|.+++++. ..+++|+.|++++|+ ++++|.+.+.+|..+..+++|+.|++++|.+ +
T Consensus 756 ~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~---------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~ 819 (876)
T 4ecn_A 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR---------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R 819 (876)
T ss_dssp CEEECCSSCCSSCCCGGGGCTTCCEEECCCCB---------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred CEEEeCCCCCCccchhhhcCCCCCEEECCCCC---------------CcccccccccChHHHhcCCCCCEEECCCCCC-C
Confidence 555555555554321 133444444444443 2233444444444455555555555555555 2
Q ss_pred CCChhhhhccCcccEEECCCCcccc
Q 043978 486 TIPPCLGNFTTQLITLHLKNNSLEG 510 (683)
Q Consensus 486 ~~~~~~~~~~~~L~~L~l~~n~l~~ 510 (683)
.+|..+. ++|+.|++++|++..
T Consensus 820 ~Ip~~l~---~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 820 KVDEKLT---PQLYILDIADNPNIS 841 (876)
T ss_dssp BCCSCCC---SSSCEEECCSCTTCE
T ss_pred ccCHhhc---CCCCEEECCCCCCCc
Confidence 4444322 244444444444443
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-42 Score=390.47 Aligned_cols=441 Identities=19% Similarity=0.208 Sum_probs=279.8
Q ss_pred CCccEEEcCCCcCCCCCCccCCCCCCCcEEEc-cCCCCCcccCC-C----------------------------------
Q 043978 136 STMTDLDLSGTRIQGNFPDQIFLLPNLRVLYL-CGNIHLTGYLP-K---------------------------------- 179 (683)
Q Consensus 136 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l-~~n~~~~~~~~-~---------------------------------- 179 (683)
.+++.|+|+++.+.+.+|..++++++|++|++ ++| .+.+..+ .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 46777888888887777777888888888888 555 3333211 0
Q ss_pred ---------------C--CCCCCCCEEECCC--CcCccccCccccCCCCCCEEEccCCcccc-----------------c
Q 043978 180 ---------------C--NWSSPLRELDLSL--SDFSGEIPYSIGNLLFLETVDITYCNFMG-----------------S 223 (683)
Q Consensus 180 ---------------~--~~~~~L~~L~L~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~ 223 (683)
+ .....++.+.+.. |.+++ +|..+.++++|++|++++|.+.+ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 0111222222222 44554 66666677777777777776665 2
Q ss_pred CCCCCC--CCCCCCeeeccCccccccCCccccCCCCCCEEEccCCc-Ccc-cCCccccCCCCCcEEEccCCcccCcCCCC
Q 043978 224 IPTSTG--NLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNS-LQG-KVPSWLFTLPSLVSVNLAWNKLTGPIDGF 299 (683)
Q Consensus 224 ~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 299 (683)
+|..++ .+++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..++ ..+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~----------------~~~ 544 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA----------------DDE 544 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH----------------HCT
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh----------------hcc
Confidence 555554 55555555555555555555555555555555555555 544 4444333222 011
Q ss_pred CCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCC
Q 043978 300 QSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNV 379 (683)
Q Consensus 300 ~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l 379 (683)
..+++|++|++++|.+. .+|.. ..+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+
T Consensus 545 ~~l~~L~~L~Ls~N~L~-~ip~~----------~~l~~L~~L~~L~Ls~N~l~~lp------~~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 545 DTGPKIQIFYMGYNNLE-EFPAS----------ASLQKMVKLGLLDCVHNKVRHLE------AFGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp TTTTTCCEEECCSSCCC-BCCCH----------HHHTTCTTCCEEECTTSCCCBCC------CCCTTSEESEEECCSSCC
T ss_pred cccCCccEEEeeCCcCC-ccCCh----------hhhhcCCCCCEEECCCCCcccch------hhcCCCcceEEECcCCcc
Confidence 23334444455444444 33320 02344455555555555543321 233445555555555555
Q ss_pred CCcChhhhhccccccccCCCcccCCCc-CcEEECCCCcccccCCC--C--CCCceEEeCCCCCCCccCCC--------CC
Q 043978 380 SEFPSFLRNSEKIHGRISKHDSKGWKS-LIDLDLSNNFLTHIALH--P--WKNIRTLDLRNNKIQGSILV--------PP 446 (683)
Q Consensus 380 ~~~p~~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~--~--~~~L~~L~l~~n~l~~~~~~--------~~ 446 (683)
..+|..+ ..+++ |+.|++++|.++.++.. . .++|+.|++++|++.+..+. ..
T Consensus 608 ~~lp~~l---------------~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 608 EEIPEDF---------------CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SCCCTTS---------------CEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred ccchHHH---------------hhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 4444321 33444 55555555555543221 1 12366666666666553321 23
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccC-------cccEEECCCCccccccccccc--
Q 043978 447 PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT-------QLITLHLKNNSLEGHIHDTFE-- 517 (683)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~~~~~~-- 517 (683)
++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..++.... +|+.|++++|+++ .+|..+.
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence 47888888888888443344568999999999999998 78877665432 8999999999998 4566665
Q ss_pred CCCCccEEEcCCCcccccCchhhhcCCCCcEEEccC------CcCCccCCccccCCCCCCEEEccCCcCcccCCCCcccc
Q 043978 518 NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN------NMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTF 591 (683)
Q Consensus 518 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~------n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 591 (683)
.+++|+.|+|++|++++ +|..+..+++|+.|++++ |.+.+.+|.+|..+++|+.|+|++|++ +.+|...
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--- 825 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--- 825 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC---
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh---
Confidence 89999999999999996 688899999999999976 788888999999999999999999999 5666432
Q ss_pred CCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceeeecc
Q 043978 592 SFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMG 635 (683)
Q Consensus 592 ~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~~~~ 635 (683)
.++|+.||+++|++... +...|.....+..+.+.+|+.+.|.
T Consensus 826 -~~~L~~LdLs~N~l~~i-~~~~~~~~~~~~~~~L~~n~~~~I~ 867 (876)
T 4ecn_A 826 -TPQLYILDIADNPNISI-DVTSVCPYIEAGMYVLLYDKTQDIR 867 (876)
T ss_dssp -CSSSCEEECCSCTTCEE-ECGGGHHHHHTTCCEEECCTTSEEE
T ss_pred -cCCCCEEECCCCCCCcc-ChHHccccccchheeecCCCccccC
Confidence 26999999999999854 4466777777888888888776654
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.3e-41 Score=376.13 Aligned_cols=511 Identities=18% Similarity=0.165 Sum_probs=369.1
Q ss_pred CEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEE
Q 043978 87 THLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLY 166 (683)
Q Consensus 87 ~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 166 (683)
++.+.++..++..+..+| +++++|+|++|.++.+.+.+|.++ ++|++|+|++|++++..+++|.++++|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp------~~~~~LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~ 106 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 106 (635)
T ss_dssp TEEECTTSCCSSCCSSSC------TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCCcCccCCCCC------cCCCEEEeeCCCCCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEE
Confidence 455666655553333332 468888888888888877888888 8888888888888876677788888888888
Q ss_pred ccCCCCCcccCC-CCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccc-cCCCCCCCCCCCCeeeccCccc
Q 043978 167 LCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMG-SIPTSTGNLSKATEILFASNHL 244 (683)
Q Consensus 167 l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l 244 (683)
+++| .+....+ .+.++++|++|++++|.+.+..+..|+++++|++|++++|.+.. ..|..++.+++|++|++++|++
T Consensus 107 Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 107 LTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 8888 6665554 57788888888888888876666678888888888888888765 3466777788888888888888
Q ss_pred cccCCccccCCCC----CCEEEccCCcCcccCCccccCCCCCcEEEccCCcccC--cCCCCCCCCCCcEEECCCCcCcc-
Q 043978 245 TGQLPHHVSGLLY----LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG--PIDGFQSPNSLEEVHLEKNQIHG- 317 (683)
Q Consensus 245 ~~~~~~~l~~l~~----L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~~~~~~L~~L~L~~n~i~~- 317 (683)
.+..+..+..+.+ ...++++.|.+....+. ......++.+++.+|.... ....+..+..++...+..+....
T Consensus 186 ~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 264 (635)
T 4g8a_A 186 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 264 (635)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred cccccccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence 7777766655433 34677888887744443 3334456777777764331 11111233444433332111110
Q ss_pred -----cCCccchhc---------------cCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccC
Q 043978 318 -----TIPSSLFQL---------------CGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377 (683)
Q Consensus 318 -----~~~~~~~~~---------------~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 377 (683)
.....+... ........+..+.+++.+++.++.+..+. .+.....++.|++.+|
T Consensus 265 ~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 265 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK------DFSYNFGWQHLELVNC 338 (635)
T ss_dssp CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG------GGGSCCCCSEEEEESC
T ss_pred cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc------ccccchhhhhhhcccc
Confidence 000000000 00001123445567777887777755442 2335667888888888
Q ss_pred CCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC-CCCCCceEEeCCCCCCCccCC-----CCCCCCcE
Q 043978 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL-HPWKNIRTLDLRNNKIQGSIL-----VPPPSTEV 451 (683)
Q Consensus 378 ~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~ 451 (683)
.+..++. ..++.|+.+++..|....... ..+++|+.+++++|.+..... ....++++
T Consensus 339 ~~~~~~~-----------------~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 401 (635)
T 4g8a_A 339 KFGQFPT-----------------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKY 401 (635)
T ss_dssp EESSCCC-----------------CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCE
T ss_pred cccCcCc-----------------ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhh
Confidence 7765543 456778888888887765533 367899999999998864322 25678999
Q ss_pred EEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCc
Q 043978 452 FLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNK 531 (683)
Q Consensus 452 L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 531 (683)
+++..+.+.. .+..+..+++|+.++++++......+...+....+++.+++++|.+....+..+..+++|+.|++++|.
T Consensus 402 L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~ 480 (635)
T 4g8a_A 402 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 480 (635)
T ss_dssp EECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred hhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence 9999988874 455678899999999999887755555444445599999999999999999999999999999999998
Q ss_pred cc-ccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCC
Q 043978 532 FE-GSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFL 610 (683)
Q Consensus 532 l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 610 (683)
+. ...|..|..+++|++|++++|++++..|..|+++++|++|+|++|++++..+ ..+..+++|++||+++|++++..
T Consensus 481 ~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~ 558 (635)
T 4g8a_A 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT--FPYKCLNSLQVLDYSLNHIMTSK 558 (635)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC--GGGTTCTTCCEEECTTSCCCBCC
T ss_pred cccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh--hHHhCCCCCCEEECCCCcCCCCC
Confidence 54 4578889999999999999999999999999999999999999999987655 45678999999999999999766
Q ss_pred cHHHHhcc-hhhcccccccceeee
Q 043978 611 PRRNFTSM-EAMKNVDEQATRLQY 633 (683)
Q Consensus 611 p~~~~~~~-~~L~~l~l~~n~~~~ 633 (683)
| ..|..+ ++|+.+++++|++.-
T Consensus 559 ~-~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 559 K-QELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp S-SCTTCCCTTCCEEECTTCCBCC
T ss_pred H-HHHHhhhCcCCEEEeeCCCCcc
Confidence 6 677777 689999999999863
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=377.30 Aligned_cols=463 Identities=19% Similarity=0.179 Sum_probs=247.4
Q ss_pred EEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEE
Q 043978 10 IGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHL 89 (683)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 89 (683)
+.||+++ +.++ .++. .+. ++|++|++++|.+.+. .+..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 3 ~~l~ls~--n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSK--NGLI-HVPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTT--SCCS-SCCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCC--CCcc-cccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 3566776 6665 3444 333 6677777777766544 34566777777777777777766666667777777777
Q ss_pred eCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcC-ChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCC--cEEE
Q 043978 90 GLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLI-KPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNL--RVLY 166 (683)
Q Consensus 90 ~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~ 166 (683)
++++|.++. +|.. .+++|++|++++|.+++. .|..++.+ ++|++|++++|.+.+ ..+..+++| ++|+
T Consensus 75 ~Ls~N~l~~----lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 75 DLSHNKLVK----ISCH--PTVNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLEK---SSVLPIAHLNISKVL 144 (520)
T ss_dssp ECCSSCCCE----EECC--CCCCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCCG---GGGGGGTTSCEEEEE
T ss_pred ecCCCceee----cCcc--ccCCccEEeccCCccccccchhhhccC-CcceEEEecCcccch---hhccccccceeeEEE
Confidence 777766652 2222 456666666666666553 34556665 666666666665553 233444444 5555
Q ss_pred ccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCC-CCCEEEccCCcccccCC-CCCCCCCCCCeeeccCcc-
Q 043978 167 LCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLL-FLETVDITYCNFMGSIP-TSTGNLSKATEILFASNH- 243 (683)
Q Consensus 167 l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~- 243 (683)
+++| .+.+ .+..|..+..+. ....+++++|.+.+..+ ..+..+++|+.+++++|.
T Consensus 145 l~~n-~l~~---------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 145 LVLG-ETYG---------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp EEEC-TTTT---------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred eecc-cccc---------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 5555 2200 223333333322 11123344444333222 233444555555555443
Q ss_pred ------ccccCCccccCCCCCCEEEccCCcCcccCCcccc---CCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCc
Q 043978 244 ------LTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF---TLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQ 314 (683)
Q Consensus 244 ------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~ 314 (683)
+.+.++ .+..+++|+.|++++|.+.+..+..+. ..++|+.|++++| .
T Consensus 203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n-----------------------~ 258 (520)
T 2z7x_B 203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV-----------------------K 258 (520)
T ss_dssp TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE-----------------------E
T ss_pred ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc-----------------------c
Confidence 222222 344445555555554444322111110 0223444444444 3
Q ss_pred CcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhcccccc
Q 043978 315 IHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHG 394 (683)
Q Consensus 315 i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~ 394 (683)
+.+.+|..++.. ....+++|+.+++++|.+ .++... +......++|+.|++++|.+..++..
T Consensus 259 l~~~~p~~~~~~-------~~~~l~~L~~l~l~~n~~-~~p~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~--------- 320 (520)
T 2z7x_B 259 LQGQLDFRDFDY-------SGTSLKALSIHQVVSDVF-GFPQSY-IYEIFSNMNIKNFTVSGTRMVHMLCP--------- 320 (520)
T ss_dssp EESCCCCCCCCC-------CSCCCCEEEEEEEEECCC-CSCTHH-HHHHHHTCCCSEEEEESSCCCCCCCC---------
T ss_pred ccCccccchhhc-------ccccCceeEeccccccce-ecchhh-hhcccccCceeEEEcCCCccccccch---------
Confidence 333333311100 013444444555544443 221100 00000113455555555554432210
Q ss_pred ccCCCcccCCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCC
Q 043978 395 RISKHDSKGWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLS 471 (683)
Q Consensus 395 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 471 (683)
..+++|++|++++|.+++..+ ..+++|+.|++++|++++. +.+|..+..++
T Consensus 321 -------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-------------------~~~~~~~~~l~ 374 (520)
T 2z7x_B 321 -------SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-------------------SKIAEMTTQMK 374 (520)
T ss_dssp -------SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-------------------HHHHHHHTTCT
T ss_pred -------hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-------------------ccchHHHhhCC
Confidence 345666666666666655322 2334444444444444320 02345577778
Q ss_pred CCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEc
Q 043978 472 SLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNV 551 (683)
Q Consensus 472 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 551 (683)
+|++|++++|.+.+.+|...+...++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEEC
Confidence 8888888888887546665444445888888888888766665553 68888888888887 56766778888888888
Q ss_pred cCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 552 GNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 552 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
++|++++..+..|..+++|++|++++|++.+.
T Consensus 452 ~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 452 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 88888854333477888888888888887654
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-40 Score=364.62 Aligned_cols=447 Identities=22% Similarity=0.214 Sum_probs=253.4
Q ss_pred CCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEEC
Q 043978 112 KLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDL 191 (683)
Q Consensus 112 ~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 191 (683)
+|++|++++|.+++..+..|..+ ++|++|++++|++++..|+.+..+++|++|++++| .+.. ++.. .+++|++|++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~-lp~~-~l~~L~~L~L 128 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQN-ISCC-PMASLRHLDL 128 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCE-ECSC-CCTTCSEEEC
T ss_pred CcCEEECCCCCccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCc-cCcc-ccccCCEEEC
Confidence 34444444444444444445555 55555555555555444455555555555555555 3332 2211 4555555555
Q ss_pred CCCcCcc-ccCccccCCCCCCEEEccCCcccccCCCCCCCCCCC--CeeeccCccc--cccCCccccCCC-CCCEEEccC
Q 043978 192 SLSDFSG-EIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKA--TEILFASNHL--TGQLPHHVSGLL-YLTNLDLFG 265 (683)
Q Consensus 192 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~L~~L~l~~ 265 (683)
++|.+.+ ..|..|.++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..+..+..+. ..-.+++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 5555553 234566666666666666666653 233333444 6666666665 545555554433 111335555
Q ss_pred CcCcccCCc-cccCCCCCcEEEccCCcc-----cCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCC
Q 043978 266 NSLQGKVPS-WLFTLPSLVSVNLAWNKL-----TGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLK 339 (683)
Q Consensus 266 n~l~~~~~~-~l~~l~~L~~L~L~~n~i-----~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 339 (683)
|.+.+.++. .+..+++|+.+++++|+. ....+.+..++.|+.++++++.+.+.....+. .....+
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~---------~~~~~~ 276 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF---------QFFWPR 276 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH---------HHHTTS
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH---------Hhhhcc
Confidence 554433332 223345555555555431 11111222334444444444433321100000 001112
Q ss_pred CCCEEeCCCCCcc-ccccccccccccCCCCccEEEcccCCCCCcCh-hhhhccccccccCCCcccCCCcCcEEECCCCcc
Q 043978 340 NLQFLDLSNNNLL-SFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPS-FLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFL 417 (683)
Q Consensus 340 ~L~~L~l~~n~l~-~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 417 (683)
+|++|++++|.+. .++..........++.|+.+++..+.+ .+|. ++... .
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~------------~--------------- 328 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSV------------F--------------- 328 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHH------------H---------------
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhh------------h---------------
Confidence 4444444444432 111100000001222222222222222 2221 00000 0
Q ss_pred cccCCCCCCCceEEeCCCCCCCccCC-CCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCC---hhhhh
Q 043978 418 THIALHPWKNIRTLDLRNNKIQGSIL-VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIP---PCLGN 493 (683)
Q Consensus 418 ~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~ 493 (683)
...+++.|++++|.+....+ ..+++|++|++++|.+.+..|..+..+++|++|++++|++. .++ ..+..
T Consensus 329 ------~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~ 401 (562)
T 3a79_B 329 ------AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKN 401 (562)
T ss_dssp ------HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTT
T ss_pred ------ccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcC
Confidence 01335555555555544333 45677778888888888778889999999999999999998 444 34555
Q ss_pred ccCcccEEECCCCcccc-cccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCE
Q 043978 494 FTTQLITLHLKNNSLEG-HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKI 572 (683)
Q Consensus 494 ~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 572 (683)
+. +|++|++++|++++ ..+..|..+++|+.|++++|++++..|..+. ++|++|++++|.++ .+|..+..+++|++
T Consensus 402 l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 402 MS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp CT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred CC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence 54 99999999999998 5556789999999999999999876655443 68999999999998 57776779999999
Q ss_pred EEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHH
Q 043978 573 LILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNF 615 (683)
Q Consensus 573 L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~ 615 (683)
|++++|+++. +|.. .+..+++|++|++++|++.+.+|..+|
T Consensus 478 L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 478 LNVASNQLKS-VPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp EECCSSCCCC-CCTT-STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred EECCCCCCCC-CCHH-HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 9999999985 4422 467899999999999999998886666
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5e-39 Score=352.37 Aligned_cols=456 Identities=19% Similarity=0.197 Sum_probs=295.2
Q ss_pred CCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCE
Q 043978 110 LTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRE 188 (683)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~ 188 (683)
+...++++++++.++.+ |..+ +++|++|++++|.+.+..+..+..+++|++|++++| .+.+..+ .+..+++|++
T Consensus 30 ~~~~~~l~ls~~~L~~i-p~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTHV-PKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCSC-CTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCccC-CCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCE
Confidence 34447777877777765 3333 378888888888888766678888888888888887 5555544 5666777777
Q ss_pred EECCCCcCccccCccccCCCCCCEEEccCCcccc-cCCCCCCCCCCCCeeeccCccccccCCccccCCCCC--CEEEccC
Q 043978 189 LDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMG-SIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYL--TNLDLFG 265 (683)
Q Consensus 189 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~ 265 (683)
|++++|.+. .+|.. .+++|++|++++|.+.+ ..|..|+.+++|++|++++|.+.+.. +..+++| ++|++++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeec
Confidence 777777766 44544 66777777777776664 23456666666666666666665432 3333333 6666666
Q ss_pred CcC--cccCCccccCCC-CCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCC
Q 043978 266 NSL--QGKVPSWLFTLP-SLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQ 342 (683)
Q Consensus 266 n~l--~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~ 342 (683)
|.+ ++..|..+..+. ....+++++|.+.. .++. ..+..+++|+
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~-----------------------~~~~-----------~~~~~l~~L~ 224 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFS-----------------------VQVN-----------MSVNALGHLQ 224 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCC-----------------------CCCE-----------EEESSEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchh-----------------------hhhh-----------hcccccceEE
Confidence 666 555555554432 11133444444333 2221 1233444555
Q ss_pred EEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC
Q 043978 343 FLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL 422 (683)
Q Consensus 343 ~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 422 (683)
.+++++|....-...+....+..++.|+.++++++.+..-. +. .++.. ...++|++|++++|.+++..+
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~--------~~-~~~~~--~~~~~L~~L~l~~n~l~~~ip 293 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC--------SV-KLFQF--FWPRPVEYLNIYNLTITERID 293 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH--------HH-HHHHH--HTTSSEEEEEEEEEEECSCCC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH--------HH-HHHHh--hhcccccEEEEeccEeecccc
Confidence 55555543100000111112234445555555544433100 00 00000 112356666666666653322
Q ss_pred --------CCCCCceEEeCCCCCCCccCCC-------CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCC
Q 043978 423 --------HPWKNIRTLDLRNNKIQGSILV-------PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTI 487 (683)
Q Consensus 423 --------~~~~~L~~L~l~~n~l~~~~~~-------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 487 (683)
..++.|+.++++.+.+ ..+. ...++++|++++|.+.... ....+++|++|++++|.+.+.+
T Consensus 294 ~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 294 REEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp CCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTT
T ss_pred chhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccch
Confidence 2233344444444544 1110 1257999999999987432 2268899999999999999778
Q ss_pred ChhhhhccCcccEEECCCCccccc--ccccccCCCCccEEEcCCCcccccCc-hhhhcCCCCcEEEccCCcCCccCCccc
Q 043978 488 PPCLGNFTTQLITLHLKNNSLEGH--IHDTFENASNIQSFDLNCNKFEGSLP-RSLAKCVKLEVVNVGNNMINDTFPCWL 564 (683)
Q Consensus 488 ~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l 564 (683)
|..+..+. +|++|++++|++++. .+..|.++++|+.|++++|++++..| ..+..+++|++|++++|.+++..|..+
T Consensus 370 ~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 370 FQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTTCCSCS-SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred hhhhcccC-CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 88777765 999999999999974 35679999999999999999997344 568899999999999999987766654
Q ss_pred cCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceee
Q 043978 565 GSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 565 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
. ++|++|++++|++.. +|. ....+++|++|++++|+++ .+|...|..+++|+.+++++|++.
T Consensus 449 ~--~~L~~L~L~~N~l~~-ip~--~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 449 P--PKVKVLDLHNNRIMS-IPK--DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp C--TTCSEEECCSSCCCC-CCT--TTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred c--CcCCEEECCCCcCcc-cCh--hhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 3 799999999999984 443 3348999999999999999 578667999999999999999985
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.8e-39 Score=339.09 Aligned_cols=415 Identities=21% Similarity=0.237 Sum_probs=204.0
Q ss_pred CCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEE
Q 043978 110 LTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLREL 189 (683)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 189 (683)
.++|++|++++|.+ +..|.+++++ ++|++|++++|.+.+.+|..++.+++|+.+++.+| . ..++++|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c-~----------~~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-L----------DRQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHH-H----------HHTCSEE
T ss_pred cccchhhhcccCch-hhCChhHhcc-cchhhhhccCCcccccCCcccccchhcchhhhhhh-h----------ccCCCEE
Confidence 35566666666666 3345566666 66666666666666666666666666655444444 1 1235555
Q ss_pred ECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCc
Q 043978 190 DLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 190 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 269 (683)
++++|.+++ +|.. .++|++|++++|.+.+ +|.. .++|++|++++|.+.+. +.. .++|++|++++|.++
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC
Confidence 555555542 2321 2456666666665554 3332 25566666666655532 111 145666666666666
Q ss_pred ccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCC
Q 043978 270 GKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349 (683)
Q Consensus 270 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 349 (683)
+ +| .+..+++|+.|++++|++++.... ..+|++|++++|.+++ +| .+..+++|+.|++++|
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-------------~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-------------ELQNLPFLTAIYADNN 205 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-------------CCTTCTTCCEEECCSS
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-------------cccCCCCCCEEECCCC
Confidence 3 44 366666666666666666543221 2466666666666653 22 2556666777777777
Q ss_pred CccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCce
Q 043978 350 NLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIR 429 (683)
Q Consensus 350 ~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~ 429 (683)
.+..++. ..++|++|++++|.+..+|.+ ..+++|+.|++++|++++++. .+++|+
T Consensus 206 ~l~~l~~--------~~~~L~~L~l~~n~l~~lp~~----------------~~l~~L~~L~l~~N~l~~l~~-~~~~L~ 260 (454)
T 1jl5_A 206 SLKKLPD--------LPLSLESIVAGNNILEELPEL----------------QNLPFLTTIYADNNLLKTLPD-LPPSLE 260 (454)
T ss_dssp CCSSCCC--------CCTTCCEEECCSSCCSSCCCC----------------TTCTTCCEEECCSSCCSSCCS-CCTTCC
T ss_pred cCCcCCC--------CcCcccEEECcCCcCCccccc----------------CCCCCCCEEECCCCcCCcccc-cccccC
Confidence 6554432 124677777777766655532 556677777777777665432 346677
Q ss_pred EEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccc
Q 043978 430 TLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509 (683)
Q Consensus 430 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 509 (683)
.|++++|++++ .+..+++|++|++++|.+.+. +. ..++|+.|++++|.+. .++ ..+++|+.|++++|+++
T Consensus 261 ~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~-~i~----~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 261 ALNVRDNYLTD-LPELPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIR-SLC----DLPPSLEELNVSNNKLI 330 (454)
T ss_dssp EEECCSSCCSC-CCCCCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCS-EEC----CCCTTCCEEECCSSCCS
T ss_pred EEECCCCcccc-cCcccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCC-ccc----CCcCcCCEEECCCCccc
Confidence 77777777665 333456677777777776652 11 1256777777777776 233 22347777777777777
Q ss_pred ccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCc--cCCccccCCCCCCEEEccCCcCcccCCCC
Q 043978 510 GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND--TFPCWLGSLPLLKILILRSNRFYGPLCKS 587 (683)
Q Consensus 510 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 587 (683)
+. |.. +++|+.|++++|++++ +|. .+++|++|++++|++++ .+|.+++. ++.|.+.+.+|.
T Consensus 331 ~l-p~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~- 393 (454)
T 1jl5_A 331 EL-PAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPE- 393 (454)
T ss_dssp CC-CCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------
T ss_pred cc-ccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccccccccc-
Confidence 53 322 4677777777777773 444 35677788888877776 44544432 233555444432
Q ss_pred ccccCCCCCcEEeCCCCcCCC--CCcHHHHhcchhhccccccccee
Q 043978 588 ITTFSFQALRIIDLSRNEFKD--FLPRRNFTSMEAMKNVDEQATRL 631 (683)
Q Consensus 588 ~~~~~l~~L~~L~ls~n~~~~--~~p~~~~~~~~~L~~l~l~~n~~ 631 (683)
.+++|++||+++|++++ .+| ..++.+.+.++++
T Consensus 394 ----~~~~L~~L~ls~N~l~~~~~iP-------~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 394 ----LPQNLKQLHVETNPLREFPDIP-------ESVEDLRMNSERV 428 (454)
T ss_dssp ----------------------------------------------
T ss_pred ----ccCcCCEEECCCCcCCccccch-------hhHhheeCcCccc
Confidence 24677888888888876 455 2345555555543
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-38 Score=337.48 Aligned_cols=420 Identities=24% Similarity=0.294 Sum_probs=201.9
Q ss_pred ccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCC
Q 043978 33 RLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTK 112 (683)
Q Consensus 33 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~ 112 (683)
..++|++|++++|.+ +. +|..++++++|++|++++|.+.+.+|..++++.+|++++++.|. ..+
T Consensus 9 ~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~--------------~~~ 72 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL--------------DRQ 72 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH--------------HHT
T ss_pred ccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh--------------ccC
Confidence 467899999999988 33 78889999999999999998888888888888888776665442 156
Q ss_pred CCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECC
Q 043978 113 LSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS 192 (683)
Q Consensus 113 L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 192 (683)
+++|++++|.+++... .+++|++|++++|.+++ +|.. .++|++|++++| .+.+... + .++|++|+++
T Consensus 73 l~~L~l~~~~l~~lp~-----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n-~l~~l~~-~--~~~L~~L~L~ 139 (454)
T 1jl5_A 73 AHELELNNLGLSSLPE-----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNN-NLKALSD-L--PPLLEYLGVS 139 (454)
T ss_dssp CSEEECTTSCCSCCCS-----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSS-CCSCCCS-C--CTTCCEEECC
T ss_pred CCEEEecCCccccCCC-----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCC-ccCcccC-C--CCCCCEEECc
Confidence 7888888888776532 23788888888888885 5543 367888888777 4443211 1 1466677777
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKV 272 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 272 (683)
+|.+.+ +| .+..+++|++|++++|++.+ +|..+ .+|++|++++|.+.+ +| .++.+++|++|++++|.+++ +
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L 210 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence 666663 45 46666666666666666653 33322 355666666665554 23 35555555666665555552 2
Q ss_pred CccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcc
Q 043978 273 PSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL 352 (683)
Q Consensus 273 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 352 (683)
|.. .++|+.|++++|.+.. ++.+..+++ |++|++++|++.
T Consensus 211 ~~~---~~~L~~L~l~~n~l~~-lp~~~~l~~------------------------------------L~~L~l~~N~l~ 250 (454)
T 1jl5_A 211 PDL---PLSLESIVAGNNILEE-LPELQNLPF------------------------------------LTTIYADNNLLK 250 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSS-CCCCTTCTT------------------------------------CCEEECCSSCCS
T ss_pred CCC---cCcccEEECcCCcCCc-ccccCCCCC------------------------------------CCEEECCCCcCC
Confidence 221 1345555555554442 223344444 444444444443
Q ss_pred ccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEe
Q 043978 353 SFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLD 432 (683)
Q Consensus 353 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~ 432 (683)
.++. .+++|+.|++++|++..+|.. .++|+.|++++|.+++++. ..++|+.|+
T Consensus 251 ~l~~--------~~~~L~~L~l~~N~l~~l~~~------------------~~~L~~L~ls~N~l~~l~~-~~~~L~~L~ 303 (454)
T 1jl5_A 251 TLPD--------LPPSLEALNVRDNYLTDLPEL------------------PQSLTFLDVSENIFSGLSE-LPPNLYYLN 303 (454)
T ss_dssp SCCS--------CCTTCCEEECCSSCCSCCCCC------------------CTTCCEEECCSSCCSEESC-CCTTCCEEE
T ss_pred cccc--------cccccCEEECCCCcccccCcc------------------cCcCCEEECcCCccCcccC-cCCcCCEEE
Confidence 3321 124455555555544443321 1445555555555554321 124566666
Q ss_pred CCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccc--
Q 043978 433 LRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG-- 510 (683)
Q Consensus 433 l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-- 510 (683)
+++|++++. +..+++|++|++++|++.+ +|.. +++|++|++++|.++ .+|. .+++|++|++++|++++
T Consensus 304 l~~N~l~~i-~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 304 ASSNEIRSL-CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp CCSSCCSEE-CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCC
T ss_pred CcCCcCCcc-cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc----hhhhccEEECCCCCCCcCC
Confidence 666665542 1223466666666666664 3332 467777777777776 5665 23477777777777776
Q ss_pred cccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCc--cCCccccCCCCCCEEEccCCcCcccC
Q 043978 511 HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND--TFPCWLGSLPLLKILILRSNRFYGPL 584 (683)
Q Consensus 511 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~ 584 (683)
..|..+. .| +.|.+.+..|.. +++|++|++++|.+++ .+| ++++.|.+.+|.+.+..
T Consensus 374 ~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 374 DIPESVE------DL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPY 432 (454)
T ss_dssp CCCTTCC------EE--ECCC-------------------------------------------------------
T ss_pred CChHHHH------hh--hhcccccccccc---cCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCcc
Confidence 3343332 22 234444444442 4678888888888875 333 34666777777776543
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-37 Score=331.63 Aligned_cols=391 Identities=19% Similarity=0.136 Sum_probs=236.5
Q ss_pred CEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccC-C-CCCCCCCCCEEEC
Q 043978 114 SLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYL-P-KCNWSSPLRELDL 191 (683)
Q Consensus 114 ~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~-~~~~~~~L~~L~L 191 (683)
+.++.+++.++.+ |. ++++|++|++++|.+++..|..+..+++|++|++++| .....+ + .+..+++|++|++
T Consensus 13 ~~~~c~~~~l~~l-p~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRGLHQV-PE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSCCSSC-CC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEEC
T ss_pred cccCcCCCCcccC-CC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCC-cccceECcccccccccCCEEeC
Confidence 3455565555554 22 3367788888888777666777777777777777777 443222 2 5666677777777
Q ss_pred CCCcCccccCccccCCCCCCEEEccCCcccccCCC--CCCCCCCCCeeeccCccccccCCcc-ccCCCCCCEEEccCCcC
Q 043978 192 SLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPT--STGNLSKATEILFASNHLTGQLPHH-VSGLLYLTNLDLFGNSL 268 (683)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l 268 (683)
++|.+.+..|..+.++++|++|++++|.+.+..+. .++.+++|++|++++|.+.+..|.. +.++++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 77776666666777777777777777776653322 3666667777777777666655544 56666777777777766
Q ss_pred cccCCccccCC--CCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeC
Q 043978 269 QGKVPSWLFTL--PSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDL 346 (683)
Q Consensus 269 ~~~~~~~l~~l--~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 346 (683)
.+..+..+..+ .+|+.|++++|.+....+.... ......+..+++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------------------------~~~~~~~~~~~~L~~L~L 219 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG---------------------------WEKCGNPFKNTSITTLDL 219 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT---------------------------HHHHCCTTTTCEEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhcc---------------------------ccccccccccceeeeEec
Confidence 65555555443 4555555555555432211100 000012334455666666
Q ss_pred CCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCC
Q 043978 347 SNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWK 426 (683)
Q Consensus 347 ~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 426 (683)
++|.+......... .....++|+.|++++| .......
T Consensus 220 s~n~l~~~~~~~~~-~~~~~~~L~~L~l~~~--------------------------------------~~~~~~~---- 256 (455)
T 3v47_A 220 SGNGFKESMAKRFF-DAIAGTKIQSLILSNS--------------------------------------YNMGSSF---- 256 (455)
T ss_dssp TTSCCCHHHHHHHH-HHTTTCCEEEEECTTC--------------------------------------TTTSCCT----
T ss_pred CCCcccccchhhhh-ccccccceeeEeeccc--------------------------------------ccccccc----
Confidence 66654322110000 0001123333333333 2211100
Q ss_pred CceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCcccc--CCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECC
Q 043978 427 NIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYIC--SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK 504 (683)
Q Consensus 427 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~ 504 (683)
..+.+ ....+..+. ..++|+.|++++|.+.+..|..+..+. +|++|+++
T Consensus 257 -------~~~~~---------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls 307 (455)
T 3v47_A 257 -------GHTNF---------------------KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLA 307 (455)
T ss_dssp -------TCCSS---------------------CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECT
T ss_pred -------chhhh---------------------ccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECC
Confidence 00000 000111111 134677777777777655555555544 77777777
Q ss_pred CCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccC
Q 043978 505 NNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPL 584 (683)
Q Consensus 505 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 584 (683)
+|++.+..+..|.++++|+.|++++|++++..|..|..+++|++|++++|.+++..|.+|..+++|++|++++|++.+..
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 77777777777878888888888888887777778888888888888888888777788888888888888888887643
Q ss_pred CCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 585 CKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 585 ~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+ ..+..+++|++|++++|++++.+|
T Consensus 388 ~--~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 388 D--GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp T--TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred H--hHhccCCcccEEEccCCCcccCCC
Confidence 3 234677888888888888888877
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.5e-36 Score=320.78 Aligned_cols=394 Identities=18% Similarity=0.172 Sum_probs=230.2
Q ss_pred CEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCC-cCChhhhhcCcCCccEE
Q 043978 63 TYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLS-LIKPFSLLNLSSTMTDL 141 (683)
Q Consensus 63 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~~L~~L 141 (683)
+.++.+++.++.+ |. + .++|++|++++|.+... .+..+.++++|++|++++|.+. .+.+..|..+ ++|++|
T Consensus 13 ~~~~c~~~~l~~l-p~-l--~~~l~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l-~~L~~L 84 (455)
T 3v47_A 13 YNAICINRGLHQV-PE-L--PAHVNYVDLSLNSIAEL---NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL-SSLIIL 84 (455)
T ss_dssp TEEECCSSCCSSC-CC-C--CTTCCEEECCSSCCCEE---CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC-TTCCEE
T ss_pred cccCcCCCCcccC-CC-C--CCccCEEEecCCccCcC---ChhHhccCccccEEECcCCcccceECccccccc-ccCCEE
Confidence 3455555555443 22 2 14556666655554421 1222344555555555555443 2223344444 455555
Q ss_pred EcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCcc--ccCCCCCCEEEccCCc
Q 043978 142 DLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYS--IGNLLFLETVDITYCN 219 (683)
Q Consensus 142 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~ 219 (683)
++++|++.+..|..+.. +++|++|++++|.+.+..+.. +..+++|++|++++|.
T Consensus 85 ~Ls~n~l~~~~~~~~~~------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNG------------------------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp ECTTCTTCEECTTTTTT------------------------CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB
T ss_pred eCCCCccCccChhhccC------------------------cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc
Confidence 55555444444444444 455555555555554433322 5566666666666666
Q ss_pred ccccCCCC-CCCCCCCCeeeccCccccccCCccccCC--CCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcC
Q 043978 220 FMGSIPTS-TGNLSKATEILFASNHLTGQLPHHVSGL--LYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI 296 (683)
Q Consensus 220 ~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 296 (683)
+.+..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+..+.. ...
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------~~~ 205 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------EKC 205 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH---------------HHH
T ss_pred cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc---------------ccc
Confidence 66554544 5666666666666666666655555544 56777777777776443332210 011
Q ss_pred CCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEccc
Q 043978 297 DGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376 (683)
Q Consensus 297 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~ 376 (683)
..+..+++|++|++++|.+.+..|..++. ....++|+.|++++|...... +..
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~------------------~~~ 258 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFD---------AIAGTKIQSLILSNSYNMGSS------------------FGH 258 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHH---------HTTTCCEEEEECTTCTTTSCC------------------TTC
T ss_pred ccccccceeeeEecCCCcccccchhhhhc---------cccccceeeEeeccccccccc------------------cch
Confidence 12233456666666666666554443322 123467777777777632210 000
Q ss_pred CCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccC
Q 043978 377 CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSN 456 (683)
Q Consensus 377 ~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 456 (683)
+.+...... .+.++ . .++|++|++++
T Consensus 259 ~~~~~~~~~--------------~~~~~-------------------~---------------------~~~L~~L~l~~ 284 (455)
T 3v47_A 259 TNFKDPDNF--------------TFKGL-------------------E---------------------ASGVKTCDLSK 284 (455)
T ss_dssp CSSCCCCTT--------------TTGGG-------------------T---------------------TSCCCEEECCS
T ss_pred hhhccCccc--------------ccccc-------------------c---------------------ccCceEEEecC
Confidence 000000000 00000 0 12333444444
Q ss_pred CcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccC
Q 043978 457 NKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSL 536 (683)
Q Consensus 457 n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 536 (683)
|.+.+..|..+..+++|++|++++|.+.+..|..+..+. +|++|++++|++++..+..|.++++|+.|++++|++++..
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 444445666777888888888888888755555666554 8888888888888888888888888999999999888888
Q ss_pred chhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 537 PRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLC 585 (683)
Q Consensus 537 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 585 (683)
|..|..+++|++|++++|.+++..+..|..+++|++|++++|++.+..|
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8888888899999999998887777777888899999999998876654
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-36 Score=318.96 Aligned_cols=399 Identities=18% Similarity=0.134 Sum_probs=233.4
Q ss_pred hhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCC
Q 043978 129 FSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLL 208 (683)
Q Consensus 129 ~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~ 208 (683)
..++.+ ++|++|++++|.+++. | .+..+++|++|++++| .+.+. + +..+++|++|++++|.+.+. + +..++
T Consensus 36 ~~~~~l-~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n-~l~~~-~-~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 36 ISEEQL-ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSN-NITTL-D-LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEHHHH-TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSS-CCSCC-C-CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred cChhHc-CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCC-cCCeE-c-cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 344555 5566666666655532 3 3555555555555555 33332 1 44445555555555555432 2 45555
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEcc
Q 043978 209 FLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLA 288 (683)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 288 (683)
+|++|++++|.+.+. + ++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 555555555555532 2 45555555555555555542 1445555555555555332222 24444555555555
Q ss_pred CCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCC
Q 043978 289 WNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPS 368 (683)
Q Consensus 289 ~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~ 368 (683)
+|++++.. +..+++|++|++++|.+++. .+.. +++
T Consensus 179 ~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---------------~l~~----------------------------l~~ 213 (457)
T 3bz5_A 179 FNKITELD--VSQNKLLNRLNCDTNNITKL---------------DLNQ----------------------------NIQ 213 (457)
T ss_dssp SSCCCCCC--CTTCTTCCEEECCSSCCSCC---------------CCTT----------------------------CTT
T ss_pred CCccceec--cccCCCCCEEECcCCcCCee---------------cccc----------------------------CCC
Confidence 55544321 33444444444444444311 1333 444
Q ss_pred ccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCC
Q 043978 369 LLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPS 448 (683)
Q Consensus 369 L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 448 (683)
|+.|++++|+++.+| . ..+++|+.|++++|.+++.++..+++|+.|++++|.+
T Consensus 214 L~~L~Ls~N~l~~ip-~----------------~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L---------- 266 (457)
T 3bz5_A 214 LTFLDCSSNKLTEID-V----------------TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL---------- 266 (457)
T ss_dssp CSEEECCSSCCSCCC-C----------------TTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC----------
T ss_pred CCEEECcCCcccccC-c----------------cccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC----------
Confidence 444444444444433 1 4455666666666666666555666666666666533
Q ss_pred CcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcC
Q 043978 449 TEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLN 528 (683)
Q Consensus 449 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 528 (683)
+.+++++|.+.+.+| +..+++|+.|++++|...+.+|.. . .+|+.|++++| ++|+.|+++
T Consensus 267 -~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~-~~L~~L~l~~~-------------~~L~~L~L~ 326 (457)
T 3bz5_A 267 -LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---A-AGITELDLSQN-------------PKLVYLYLN 326 (457)
T ss_dssp -SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---T-CCCSCCCCTTC-------------TTCCEEECT
T ss_pred -CEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC---C-CcceEechhhc-------------ccCCEEECC
Confidence 455666666655554 467889999999999887666642 2 26666666554 689999999
Q ss_pred CCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCC
Q 043978 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 529 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
+|++++. + +..+++|++|++++|++++ ++.|+.|++++|.+.+. ..+..|+.+++++|+++|
T Consensus 327 ~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 327 NTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTI 388 (457)
T ss_dssp TCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEE
T ss_pred CCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-------ceeeecCccccccCcEEE
Confidence 9999974 3 8899999999999999985 25677778999998764 355678889999999999
Q ss_pred CCcHHHHhcchhhcccccccceeeeccccce-eeEEEEEEeccEEEEeeeeeeE
Q 043978 609 FLPRRNFTSMEAMKNVDEQATRLQYMGHAYY-DESVTVAMKGHDFQLYMLNLDQ 661 (683)
Q Consensus 609 ~~p~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 661 (683)
.+|...+....++....-..+ ..| .....+.|||.+.++..+...+
T Consensus 389 ~ip~~~~~~~~~~~~~~~~~~-------~~y~~~~~~i~~k~~~~~~~~~~y~~ 435 (457)
T 3bz5_A 389 AVSPDLLDQFGNPMNIEPGDG-------GVYDQATNTITWENLSTDNPAVTYTF 435 (457)
T ss_dssp ECCTTCBCTTSCCCEEEESSS-------EEEETTTTEEEESSCCTTSCEECEEE
T ss_pred EcChhHhcccCceeeccCCCC-------ccccCCCCeeEEEeccCCCceEEEEE
Confidence 999776665555543322211 122 3344677887765544444333
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.6e-34 Score=302.78 Aligned_cols=346 Identities=23% Similarity=0.323 Sum_probs=198.1
Q ss_pred CCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCee
Q 043978 158 LLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEI 237 (683)
Q Consensus 158 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 237 (683)
.+++++.|+++++ .+.. ++.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ ++.+++|++|
T Consensus 44 ~l~~l~~L~l~~~-~i~~-l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSS-CCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCC-CCcc-CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 3567777777776 4433 3445566777777777777664332 6667777777777776664433 6666677777
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcc
Q 043978 238 LFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHG 317 (683)
Q Consensus 238 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~ 317 (683)
++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+.|++++ .+... ..+..+++|++|++++|.+.+
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~-~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL-KPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC-GGGTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc-hhhccCCCCCEEECcCCcCCC
Confidence 777666664322 6666666666666666653 22 355666666666642 22221 224455556666665555541
Q ss_pred cCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccC
Q 043978 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRIS 397 (683)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~ 397 (683)
. ..+..+++|+.|++++|.+..+.. ...+++|+.|++++|.+..++..
T Consensus 192 ~--------------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~l------------ 239 (466)
T 1o6v_A 192 I--------------SVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIGTL------------ 239 (466)
T ss_dssp C--------------GGGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGGG------------
T ss_pred C--------------hhhccCCCCCEEEecCCccccccc------ccccCCCCEEECCCCCcccchhh------------
Confidence 1 124445555555555555433321 22344555555555544433221
Q ss_pred CCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEE
Q 043978 398 KHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLS 477 (683)
Q Consensus 398 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 477 (683)
..+++|+.|++++|.+++... +..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 240 ----~~l~~L~~L~l~~n~l~~~~~--------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 240 ----ASLTNLTDLDLANNQISNLAP--------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293 (466)
T ss_dssp ----GGCTTCSEEECCSSCCCCCGG--------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred ----hcCCCCCEEECCCCccccchh--------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence 333444444444444333211 1234445555555555553322 66677777777
Q ss_pred cCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCC
Q 043978 478 LSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIN 557 (683)
Q Consensus 478 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 557 (683)
+++|++.+ ++. +..+ ++|+.|++++|++++..+ +..+++|+.|++++|++++. ..+..+++|++|++++|+++
T Consensus 294 L~~n~l~~-~~~-~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 294 LNENQLED-ISP-ISNL-KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCSSCCSC-CGG-GGGC-TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred cCCCcccC-chh-hcCC-CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 77777763 332 3433 377777777777766544 56677777777777777643 35667777777777777776
Q ss_pred ccCCccccCCCCCCEEEccCCcCcc
Q 043978 558 DTFPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 558 ~~~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
+..| +..+++|+.|++++|++++
T Consensus 367 ~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 367 DLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp BCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccch--hhcCCCCCEEeccCCcccC
Confidence 6555 6677777777777777665
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.1e-34 Score=301.43 Aligned_cols=361 Identities=22% Similarity=0.201 Sum_probs=253.5
Q ss_pred cccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHcc
Q 043978 30 TLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASN 109 (683)
Q Consensus 30 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~ 109 (683)
++..+++|++|++++|.+.+. | .++.+++|++|++++|.++++ | ++.+++|++|++++|.++.. + +++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~----~--~~~ 104 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL----D--VTP 104 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC----C--CTT
T ss_pred ChhHcCCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee----e--cCC
Confidence 567888899999998888653 4 588888999999999988876 3 88888899999998887632 2 578
Q ss_pred CCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEE
Q 043978 110 LTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLREL 189 (683)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 189 (683)
+++|++|++++|.+++. + +..+ ++|++|++++|++++. .++.+++|++|++++| ...+.+ .+..+++|+.|
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l-~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n-~~~~~~-~~~~l~~L~~L 175 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQN-PLLTYLNCARNTLTEI---DVSHNTQLTELDCHLN-KKITKL-DVTPQTQLTTL 175 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTC-TTCCEEECTTSCCSCC---CCTTCTTCCEEECTTC-SCCCCC-CCTTCTTCCEE
T ss_pred CCcCCEEECCCCcCCee-c--CCCC-CcCCEEECCCCcccee---ccccCCcCCEEECCCC-Cccccc-ccccCCcCCEE
Confidence 88888888888888876 2 6777 8888888888888863 3778888888888888 333333 46677788888
Q ss_pred ECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCc
Q 043978 190 DLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 190 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 269 (683)
++++|.+++ +| +..+++|+.|++++|.+.+. .++.+++|++|++++|++++ +| +..+++|++|++++|.++
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 888888774 34 67778888888888877753 36777788888888887776 34 667777888888888777
Q ss_pred ccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCC
Q 043978 270 GKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349 (683)
Q Consensus 270 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 349 (683)
+.. +..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|
T Consensus 247 ~~~---~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--------------~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 247 ELD---VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--------------AEGCRKIKELDVTHN 296 (457)
T ss_dssp CCC---CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--------------CTTCTTCCCCCCTTC
T ss_pred CcC---HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--------------ccccccCCEEECCCC
Confidence 532 345667777776654 35566677776554433 345677888888877
Q ss_pred CccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCce
Q 043978 350 NLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIR 429 (683)
Q Consensus 350 ~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~ 429 (683)
..... ++ ...++|+.|++ .++++|+.|++++|+++++.+..+++|+
T Consensus 297 ~~l~~-----l~--~~~~~L~~L~l---------------------------~~~~~L~~L~L~~N~l~~l~l~~l~~L~ 342 (457)
T 3bz5_A 297 TQLYL-----LD--CQAAGITELDL---------------------------SQNPKLVYLYLNNTELTELDVSHNTKLK 342 (457)
T ss_dssp TTCCE-----EE--CTTCCCSCCCC---------------------------TTCTTCCEEECTTCCCSCCCCTTCTTCS
T ss_pred cccce-----ec--cCCCcceEech---------------------------hhcccCCEEECCCCcccccccccCCcCc
Confidence 63211 01 12334444443 3346778888888888877666777788
Q ss_pred EEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhc
Q 043978 430 TLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNF 494 (683)
Q Consensus 430 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 494 (683)
.|++++|++++ .+.|..|++++|.+.+. ..+..|..+++++|+++|.+|..+...
T Consensus 343 ~L~l~~N~l~~-----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~ 397 (457)
T 3bz5_A 343 SLSCVNAHIQD-----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQ 397 (457)
T ss_dssp EEECCSSCCCB-----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCT
T ss_pred EEECCCCCCCC-----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcc
Confidence 88888887775 34566666666666654 234456666777777776666655443
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-33 Score=300.59 Aligned_cols=346 Identities=25% Similarity=0.329 Sum_probs=283.6
Q ss_pred CCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEE
Q 043978 206 NLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSV 285 (683)
Q Consensus 206 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 285 (683)
.+++++.|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 46789999999998874 44 47889999999999999986544 8999999999999999986544 8899999999
Q ss_pred EccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccC
Q 043978 286 NLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS 365 (683)
Q Consensus 286 ~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~ 365 (683)
++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+.|+++ |.+..+ ..+..
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-------------~~~~l~~L~~L~l~-~~~~~~------~~~~~ 175 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-------------ALSGLTSLQQLSFG-NQVTDL------KPLAN 175 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-------------GGTTCTTCSEEEEE-ESCCCC------GGGTT
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-------------hhccCCcccEeecC-CcccCc------hhhcc
Confidence 999999887543 7789999999999998873 22 47889999999996 443333 23668
Q ss_pred CCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCcc-CC
Q 043978 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGS-IL 443 (683)
Q Consensus 366 ~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~-~~ 443 (683)
+++|+.|++++|.+..++.. ..+++|+.|++++|.+++.. ...+++|+.|++++|.+++. .+
T Consensus 176 l~~L~~L~l~~n~l~~~~~l----------------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l 239 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDISVL----------------AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 239 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGG----------------GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCEEECcCCcCCCChhh----------------ccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhh
Confidence 99999999999998876543 77899999999999988774 34678999999999998764 23
Q ss_pred CCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCcc
Q 043978 444 VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQ 523 (683)
Q Consensus 444 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 523 (683)
..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+ ++. +..+ ++|+.|++++|++.+..+ +..+++|+
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGL-TALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTC-TTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCC-CccCeEEcCCCcccCchh--hcCCCCCC
Confidence 467889999999999886544 8889999999999999884 444 5544 489999999999887654 77889999
Q ss_pred EEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCC
Q 043978 524 SFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSR 603 (683)
Q Consensus 524 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 603 (683)
.|++++|++++..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++.+..| +..+++|+.|++++
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLND 384 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG----GTTCTTCCEEECCC
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch----hhcCCCCCEEeccC
Confidence 99999999986655 78889999999999998865 468889999999999999887654 57788999999999
Q ss_pred CcCCCCCc
Q 043978 604 NEFKDFLP 611 (683)
Q Consensus 604 n~~~~~~p 611 (683)
|++++ .|
T Consensus 385 n~~~~-~p 391 (466)
T 1o6v_A 385 QAWTN-AP 391 (466)
T ss_dssp EEEEC-CC
T ss_pred CcccC-Cc
Confidence 99986 45
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.4e-33 Score=297.00 Aligned_cols=346 Identities=20% Similarity=0.189 Sum_probs=200.9
Q ss_pred CEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCC
Q 043978 187 RELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGN 266 (683)
Q Consensus 187 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 266 (683)
+.++.+++.+. .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 34555555444 3343332 35555666655555554555555555555555555555555555555555555555555
Q ss_pred cCcccCCccccCCCCCcEEEccCCcccCcCC-CCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEe
Q 043978 267 SLQGKVPSWLFTLPSLVSVNLAWNKLTGPID-GFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLD 345 (683)
Q Consensus 267 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 345 (683)
.++...+..|..+++|+.|++++|.+....+ .+..+++|++|++++|.+.+..+. .|..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~-------- 150 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR------------AFSG-------- 150 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT------------SSTT--------
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh------------hccC--------
Confidence 5554333344445555555555555443221 222344444444444444321111 3333
Q ss_pred CCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCC
Q 043978 346 LSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPW 425 (683)
Q Consensus 346 l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 425 (683)
+++|++|++++|.++.+|... +..+++|+.|++++|.+..+....
T Consensus 151 --------------------l~~L~~L~l~~n~l~~~~~~~--------------l~~l~~L~~L~l~~n~i~~~~~~~- 195 (477)
T 2id5_A 151 --------------------LNSLEQLTLEKCNLTSIPTEA--------------LSHLHGLIVLRLRHLNINAIRDYS- 195 (477)
T ss_dssp --------------------CTTCCEEEEESCCCSSCCHHH--------------HTTCTTCCEEEEESCCCCEECTTC-
T ss_pred --------------------CCCCCEEECCCCcCcccChhH--------------hcccCCCcEEeCCCCcCcEeChhh-
Confidence 444444444444444333211 134455555555555444332211
Q ss_pred CCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCC
Q 043978 426 KNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505 (683)
Q Consensus 426 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~ 505 (683)
+..+++|++|++++|...+.++.......+|+.|++++|.+. .+|...+...++|+.|++++
T Consensus 196 -----------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 196 -----------------FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp -----------------SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCS
T ss_pred -----------------cccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCC
Confidence 112233344444444444344444445568999999999998 66654444445899999999
Q ss_pred CcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLC 585 (683)
Q Consensus 506 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 585 (683)
|++++..+..|.++++|+.|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++.....
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 99988888889999999999999999998888889999999999999999988777788889999999999998864322
Q ss_pred CCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 586 KSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 586 ~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
. ..-......+++.++...+.-|
T Consensus 338 ~---~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 338 L---LWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp G---HHHHTTTTSSCCTTCCCBEEES
T ss_pred h---HhHHhhhhccccCccCceeCCc
Confidence 1 1111223334555666655455
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.9e-32 Score=280.58 Aligned_cols=138 Identities=22% Similarity=0.260 Sum_probs=94.5
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN 550 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 550 (683)
++|+.|++++|.+.+ . ..+..+. +|++|++++|++++..+..|..+++|+.|++++|++++ .|..+..+++|++|+
T Consensus 226 ~~L~~L~l~~n~l~~-~-~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 226 VELTILKLQHNNLTD-T-AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 301 (390)
T ss_dssp SSCCEEECCSSCCCC-C-GGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEE
T ss_pred ccccEEECCCCCCcc-c-HHHcCCC-CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEE
Confidence 456677777776653 2 3344443 77777777777777777777777788888888887774 355566777888888
Q ss_pred ccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 551 VGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 551 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
+++|++. .+|..+..+++|++|++++|++... ....+++|++|++++|++.+.....+|..+
T Consensus 302 L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-----~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~ 363 (390)
T 3o6n_A 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-----KLSTHHTLKNLTLSHNDWDCNSLRALFRNV 363 (390)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-----CCCTTCCCSEEECCSSCEEHHHHHHHTTTC
T ss_pred CCCCcce-ecCccccccCcCCEEECCCCcccee-----CchhhccCCEEEcCCCCccchhHHHHHHHH
Confidence 8888876 3555667778888888888887643 245677888888888888764433444433
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=288.27 Aligned_cols=276 Identities=20% Similarity=0.194 Sum_probs=156.0
Q ss_pred ccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 35 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
+++++|+|++|.+... .+..|.++++|++|++++|.+.++.|.+|.++++|++|++++|.+...+. ..+.++++|+
T Consensus 32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL---GVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT---TSSTTCTTCC
T ss_pred CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc---ccccCCCCCC
Confidence 4667777777766554 34566777777777777777776666677777777777777766552221 1245666666
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCC
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSL 193 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~ 193 (683)
+|++++|.+....+..|..+ ++|++|++++|.+.+..+..+..+++|++|++++| .+....+ .+..+++|+.|++++
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp EEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEES
T ss_pred EEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCC
Confidence 66666666666666666666 66666666666666555556666666666666666 4433322 344555555555555
Q ss_pred CcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 194 SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273 (683)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 273 (683)
|.+.+..+..|..+++|++|++++|...+.++.......+|++|++++|.++...+..+..+++|++|++++|.+++..+
T Consensus 186 n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (477)
T 2id5_A 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265 (477)
T ss_dssp CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred CcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh
Confidence 55554444455555555555555555444444444444455555555555554333445555555555555555554444
Q ss_pred ccccCCCCCcEEEccCCcccCc-CCCCCCCCCCcEEECCCCcCc
Q 043978 274 SWLFTLPSLVSVNLAWNKLTGP-IDGFQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~~~L~~L~L~~n~i~ 316 (683)
..+..+++|+.|++++|++... ...+..+++|++|++++|.++
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 4445555555555555554442 222334444444444444444
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8e-32 Score=281.27 Aligned_cols=310 Identities=18% Similarity=0.171 Sum_probs=209.1
Q ss_pred CCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEE
Q 043978 207 LLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVN 286 (683)
Q Consensus 207 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 286 (683)
+++++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666543333355566666666666666655555666666666666666666655555566666666666
Q ss_pred ccCCcccCcCCCC-CCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccC
Q 043978 287 LAWNKLTGPIDGF-QSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS 365 (683)
Q Consensus 287 L~~n~i~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~ 365 (683)
+++|.+...++.. ..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l-------------- 177 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD------------TFQATTSLQNLQLSSNRL-------------- 177 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT------------TTSSCTTCCEEECCSSCC--------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh------------hccCCCCCCEEECCCCcC--------------
Confidence 6666665444332 3555555555555555422222 344455555555555553
Q ss_pred CCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCC
Q 043978 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVP 445 (683)
Q Consensus 366 ~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 445 (683)
+.++. ..+++|+.+++++|.++.+.. .++|+.|++++|.+.......
T Consensus 178 --------------~~~~~-----------------~~l~~L~~L~l~~n~l~~~~~--~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 178 --------------THVDL-----------------SLIPSLFHANVSYNLLSTLAI--PIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp --------------SBCCG-----------------GGCTTCSEEECCSSCCSEEEC--CSSCSEEECCSSCCCEEECCC
T ss_pred --------------Ccccc-----------------ccccccceeecccccccccCC--CCcceEEECCCCeeeeccccc
Confidence 33221 344556666666665554422 246777777777776655555
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 525 (683)
+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+. +|+.|++++|++++. +..+..+++|+.|
T Consensus 225 ~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~-~~~~~~l~~L~~L 300 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLVAL-NLYGQPIPTLKVL 300 (390)
T ss_dssp CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECCSSCCCEE-ECSSSCCTTCCEE
T ss_pred cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc-cCCEEECCCCcCccc-CcccCCCCCCCEE
Confidence 67788888888888754 6788899999999999999866677776665 899999999999864 4556778999999
Q ss_pred EcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 526 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
++++|+++ ..|..+..+++|++|++++|.+++. + +..+++|+.|++++|++...
T Consensus 301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 99999998 5677788889999999999999764 3 67788999999999998643
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.3e-31 Score=270.72 Aligned_cols=130 Identities=18% Similarity=0.320 Sum_probs=85.8
Q ss_pred ccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCC
Q 043978 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKL 546 (683)
Q Consensus 467 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 546 (683)
+..+++|++|++++|.+. .++. +..+. +|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|
T Consensus 217 ~~~~~~L~~L~l~~n~l~-~~~~-~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKIT-DLSP-LANLS-QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG-GTTCT-TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred hhcCCcCCEEEccCCccC-CCcc-hhcCC-CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 455666666666666665 3333 33333 677777777766653 3566677777777777777643 346777777
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 547 EVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 547 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++|++++|.+.+..+..++.+++|++|++++|++++..+ ...+++|++||+++|+|+
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG----GGGCTTCSEESSSCC---
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC----hhhhhccceeehhhhccc
Confidence 777777777777777777777777777777777765433 456777778888877765
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.4e-31 Score=271.28 Aligned_cols=169 Identities=24% Similarity=0.362 Sum_probs=125.9
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEc
Q 043978 448 STEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDL 527 (683)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 527 (683)
+|++|++++|.+.+. + .+..+++|+.|++++|.+.+ ++. +..+ ++|++|++++|++++..+ +..+++|+.|++
T Consensus 178 ~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 250 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDI-S-PLASLTSLHYFTAYVNQITD-ITP-VANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250 (347)
T ss_dssp TCSEEECTTSCCCCC-G-GGGGCTTCCEEECCSSCCCC-CGG-GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCEEEccCCccccc-c-cccCCCccceeecccCCCCC-Cch-hhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence 334444444444432 2 27778889999999998874 333 4444 489999999998886654 888899999999
Q ss_pred CCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 528 NCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 528 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|+++
T Consensus 251 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 251 GTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM--EVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH--HHHHTCTTCSEEECCSSSCC
T ss_pred CCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh--hHhhccccCCEEEccCCccc
Confidence 99988753 4688889999999999988864 457888999999999998876544 34567889999999999998
Q ss_pred CCCcHHHHhcchhhcccccccceee
Q 043978 608 DFLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 608 ~~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
+..| +..++.|+.+++++|+++
T Consensus 325 ~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 325 DIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGG---GGGCTTCSEESSSCC---
T ss_pred cccC---hhhhhccceeehhhhccc
Confidence 6555 788889999999988764
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.3e-31 Score=293.01 Aligned_cols=146 Identities=21% Similarity=0.215 Sum_probs=67.2
Q ss_pred ceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCc
Q 043978 428 IRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNS 507 (683)
Q Consensus 428 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 507 (683)
|+.|++++|.+.......+++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..+..+. +|+.|++++|.
T Consensus 213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~ 289 (597)
T 3oja_B 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNR 289 (597)
T ss_dssp CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECTTSC
T ss_pred hheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc-CCCEEECCCCC
Confidence 4444444444432222222333334444444332 13455555555555555555544444444433 55555555555
Q ss_pred ccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 043978 508 LEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 508 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+++. +..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+. + +..+++|+.|++++|++.
T Consensus 290 l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 290 LVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred CCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence 5442 333344455555555555554 3344445555555555555555432 1 334445555555555543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=9.7e-31 Score=288.02 Aligned_cols=110 Identities=14% Similarity=0.104 Sum_probs=54.3
Q ss_pred CCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEc
Q 043978 184 SPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDL 263 (683)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 263 (683)
.+++.++++++.+....+..+..+++|++|++++|.+.+..+..|+.+++|++|++++|.+.+..+..|+++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34455555555544333333455555555555555555444445555555555555555555444444555555555555
Q ss_pred cCCcCcccCCccccCCCCCcEEEccCCccc
Q 043978 264 FGNSLQGKVPSWLFTLPSLVSVNLAWNKLT 293 (683)
Q Consensus 264 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 293 (683)
++|.+++..+..|..+++|+.|++++|.+.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence 555554333333344444444444444443
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.1e-28 Score=251.38 Aligned_cols=161 Identities=18% Similarity=0.235 Sum_probs=109.5
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCC
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 544 (683)
..+.++++|++|++++|.+. .+|..+. ++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..++
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 34555666666666666665 4554433 3677777777777777677777777788888888877776666777777
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccc----cCCCCCcEEeCCCCcCCC-CCcHHHHhcch
Q 043978 545 KLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITT----FSFQALRIIDLSRNEFKD-FLPRRNFTSME 619 (683)
Q Consensus 545 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----~~l~~L~~L~ls~n~~~~-~~p~~~~~~~~ 619 (683)
+|++|++++|.++ .+|.++..+++|++|++++|++++..+..+.. ...+.|+.+++++|++.. .++...|..+.
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 8888888888776 56667777788888888888877554322211 124678888888888863 24446788888
Q ss_pred hhcccccccce
Q 043978 620 AMKNVDEQATR 630 (683)
Q Consensus 620 ~L~~l~l~~n~ 630 (683)
.++.+++++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 88888888874
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2e-28 Score=249.42 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEcc
Q 043978 209 FLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLA 288 (683)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 288 (683)
+++.++++++.+. .+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3455555555444 3333331 455555555555555555556666666666666666665555556666666666666
Q ss_pred CCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcc
Q 043978 289 WNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL 352 (683)
Q Consensus 289 ~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 352 (683)
+|.+......+. ++|++|++++|.+.+..+ ..|..+++|+.|++++|.++
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~------------~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPK------------GVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCS------------GGGSSCSSCCEEECCSCCCB
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCH------------hHhCCCccCCEEECCCCccc
Confidence 666554333332 566777777776652221 24666777777777777654
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.6e-28 Score=248.45 Aligned_cols=289 Identities=17% Similarity=0.115 Sum_probs=204.4
Q ss_pred cCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCE
Q 043978 36 HLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSL 115 (683)
Q Consensus 36 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~ 115 (683)
++++++++++.+.. +|..+. ++|++|++++|.++++.+..|.++++|++|++++|.+.. ..|..+.++++|++
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK---ISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC---BCTTTTTTCTTCCE
T ss_pred CCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe---eCHHHhcCCCCCCE
Confidence 67777777776643 344333 467777777777777766677777777777777777652 22344567777777
Q ss_pred EEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcc--cCC-CCCCCCCCCEEECC
Q 043978 116 LHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTG--YLP-KCNWSSPLRELDLS 192 (683)
Q Consensus 116 L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~-~~~~~~~L~~L~L~ 192 (683)
|++++|.++.... .+. ++|++|++++|.+.+..+..+..+++|++|++++| .+.. ..+ .+..+++|++|+++
T Consensus 105 L~Ls~n~l~~l~~-~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 105 LYLSKNQLKELPE-KMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp EECCSSCCSBCCS-SCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECC
T ss_pred EECCCCcCCccCh-hhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECC
Confidence 7777777765532 222 67777888877777666666777778888888777 4432 222 56667778888888
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKV 272 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 272 (683)
+|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+
T Consensus 180 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 180 DTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred CCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 87776 3454443 67888888888888777777888888888888888888777777888888888888888888 67
Q ss_pred CccccCCCCCcEEEccCCcccCcCCCCC-------CCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEe
Q 043978 273 PSWLFTLPSLVSVNLAWNKLTGPIDGFQ-------SPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLD 345 (683)
Q Consensus 273 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~-------~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 345 (683)
|.++..+++|+.|++++|+++....... ....++.+++++|++... .+....|..+.+++.++
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~----------~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW----------EIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG----------GSCGGGGTTCCCGGGEE
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc----------ccCccccccccceeEEE
Confidence 7778888888888888888876443222 246788999999988631 12334788899999999
Q ss_pred CCCCC
Q 043978 346 LSNNN 350 (683)
Q Consensus 346 l~~n~ 350 (683)
+++|+
T Consensus 326 L~~N~ 330 (330)
T 1xku_A 326 LGNYK 330 (330)
T ss_dssp C----
T ss_pred ecccC
Confidence 99885
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.1e-28 Score=249.22 Aligned_cols=251 Identities=22% Similarity=0.267 Sum_probs=178.4
Q ss_pred ccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECC
Q 043978 334 QFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLS 413 (683)
Q Consensus 334 ~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 413 (683)
.|..+++|++|++++|.++.+.. ..+..+++|++|++++|.+..+|.. ..++|++|+++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~~-----------------~~~~L~~L~l~ 131 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHE----KAFSPLRKLQKLYISKNHLVEIPPN-----------------LPSSLVELRIH 131 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECG----GGSTTCTTCCEEECCSSCCCSCCSS-----------------CCTTCCEEECC
T ss_pred HhhCCCCCcEEECCCCccCccCH----hHhhCcCCCCEEECCCCcCCccCcc-----------------ccccCCEEECC
Confidence 45555555666665555444321 1233455555555555555544431 11566677777
Q ss_pred CCcccccCC---CCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChh
Q 043978 414 NNFLTHIAL---HPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPC 490 (683)
Q Consensus 414 ~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 490 (683)
+|.++.++. ..+++|+.|++++|.++. .+..+..+..+ +|+.|++++|.+. .+|..
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~ 190 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-------------------SGFEPGAFDGL-KLNYLRISEAKLT-GIPKD 190 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBG-------------------GGSCTTSSCSC-CCSCCBCCSSBCS-SCCSS
T ss_pred CCccCccCHhHhCCCccCCEEECCCCcccc-------------------CCCCcccccCC-ccCEEECcCCCCC-ccCcc
Confidence 666665532 244555555555554432 12456667777 8999999999998 57766
Q ss_pred hhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCC
Q 043978 491 LGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLL 570 (683)
Q Consensus 491 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 570 (683)
+. ++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|.++ .+|.++..+++|
T Consensus 191 ~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 191 LP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp SC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred cc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 54 48999999999999888889999999999999999999888888999999999999999998 678889999999
Q ss_pred CEEEccCCcCcccCCCCcccc----CCCCCcEEeCCCCcCCC-CCcHHHHhcchhhcccccccce
Q 043978 571 KILILRSNRFYGPLCKSITTF----SFQALRIIDLSRNEFKD-FLPRRNFTSMEAMKNVDEQATR 630 (683)
Q Consensus 571 ~~L~l~~n~l~~~~~~~~~~~----~l~~L~~L~ls~n~~~~-~~p~~~~~~~~~L~~l~l~~n~ 630 (683)
++|++++|++++..+..+... ..+.|+.|++++|++.. .++...|..++.|+.+++++|+
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999986654332211 25779999999999972 2444789999999999998874
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.5e-30 Score=260.50 Aligned_cols=247 Identities=22% Similarity=0.297 Sum_probs=155.1
Q ss_pred cCCeeeCCCCCCCC--CCCCcccCCCCCCCEEeCCC-CCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCC
Q 043978 36 HLQSLNLAFNNFLG--SRISPEFGRLKELTYLNPSF-SNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTK 112 (683)
Q Consensus 36 ~L~~L~Ls~n~~~~--~~~~~~~~~l~~L~~L~Ls~-~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~ 112 (683)
++++|+|++|.+.+ . +|..|.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+. +.+|..+.++++
T Consensus 51 ~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~ 126 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---GAIPDFLSQIKT 126 (313)
T ss_dssp CEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---EECCGGGGGCTT
T ss_pred eEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC---CcCCHHHhCCCC
Confidence 44555555554443 2 344455555555555552 4444444555555555555555555444 222333445555
Q ss_pred CCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCC-CCcEEEccCCCCCcccCC-CCCCCCCCCEEE
Q 043978 113 LSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLP-NLRVLYLCGNIHLTGYLP-KCNWSSPLRELD 190 (683)
Q Consensus 113 L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~ 190 (683)
|++|++++|.+++..|..+..+ ++|++|++++|++++.+|..+..++ +|++|++++| .+.+..+ .+..++ |++|+
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEE
T ss_pred CCEEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEE
Confidence 5555555555554445555555 5555555555555555555555555 5566666655 4443333 344444 66777
Q ss_pred CCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcc
Q 043978 191 LSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQG 270 (683)
Q Consensus 191 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 270 (683)
+++|.+.+..|..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 777777766777778888888888888887755544 6777888888888888887888888888888888888888887
Q ss_pred cCCccccCCCCCcEEEccCCc
Q 043978 271 KVPSWLFTLPSLVSVNLAWNK 291 (683)
Q Consensus 271 ~~~~~l~~l~~L~~L~L~~n~ 291 (683)
.+|.. ..+++|+.+++++|+
T Consensus 283 ~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 283 EIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCCC-ccccccChHHhcCCC
Confidence 77775 778888888888887
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-31 Score=287.43 Aligned_cols=393 Identities=20% Similarity=0.190 Sum_probs=221.8
Q ss_pred CCCEEECCCCcCccccCc-cccCCCCCCEEEccCCcccc----cCCCCCCCCCCCCeeeccCccccccCCccc-cCCC--
Q 043978 185 PLRELDLSLSDFSGEIPY-SIGNLLFLETVDITYCNFMG----SIPTSTGNLSKATEILFASNHLTGQLPHHV-SGLL-- 256 (683)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~-- 256 (683)
+|++|+++++.++..... .+..+++|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 455566665555432222 25566666666666666653 223445555666666666666654333222 2233
Q ss_pred --CCCEEEccCCcCcc----cCCccccCCCCCcEEEccCCcccCc-CC----C-CCCCCCCcEEECCCCcCcccCCccch
Q 043978 257 --YLTNLDLFGNSLQG----KVPSWLFTLPSLVSVNLAWNKLTGP-ID----G-FQSPNSLEEVHLEKNQIHGTIPSSLF 324 (683)
Q Consensus 257 --~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~-~~----~-~~~~~~L~~L~L~~n~i~~~~~~~~~ 324 (683)
+|++|++++|.+++ .++..+..+++|++|++++|.+... .. . ....++|++|++++|.+++..+..+.
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 57777777776663 3355666667777777777766531 11 1 11245677777777766643222111
Q ss_pred hccCcccccccCCCCCCCEEeCCCCCccccccccccccc-cCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccC
Q 043978 325 QLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK-YSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKG 403 (683)
Q Consensus 325 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~ 403 (683)
. .+..+++|++|++++|.+............ ...++|++|++++|.++..+.. .++... ..
T Consensus 164 ~--------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~---------~l~~~l-~~ 225 (461)
T 1z7x_W 164 S--------VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR---------DLCGIV-AS 225 (461)
T ss_dssp H--------HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH---------HHHHHH-HH
T ss_pred H--------HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH---------HHHHHH-Hh
Confidence 1 345567777777777775432111100000 0244666666666655531100 000000 34
Q ss_pred CCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCC----CCccccCCCCCCEEEcC
Q 043978 404 WKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQ----IPPYICSLSSLKYLSLS 479 (683)
Q Consensus 404 ~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~Ls 479 (683)
+++|++|++++|.+++..... +.......+++|++|++++|.++.. ++..+..+++|++|+++
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~-------------l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAE-------------LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHH-------------HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred CCCccEEeccCCcCChHHHHH-------------HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence 455666666655554321000 0000011234455555555554432 45566778888899998
Q ss_pred CCcCCCCCChhhhhc----cCcccEEECCCCccccc----ccccccCCCCccEEEcCCCcccccCchhhhc-----CCCC
Q 043978 480 HNNLSGTIPPCLGNF----TTQLITLHLKNNSLEGH----IHDTFENASNIQSFDLNCNKFEGSLPRSLAK-----CVKL 546 (683)
Q Consensus 480 ~n~i~~~~~~~~~~~----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L 546 (683)
+|.+.+..+..+... .++|++|++++|.+++. .+..+..+++|+.|++++|++++..+..+.. .++|
T Consensus 293 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 372 (461)
T 1z7x_W 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372 (461)
T ss_dssp TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCce
Confidence 888764333333322 24888999999888765 3556667788999999999887655554443 6789
Q ss_pred cEEEccCCcCCc----cCCccccCCCCCCEEEccCCcCcccCCCCc---cccCCCCCcEEeCCCCcCCC
Q 043978 547 EVVNVGNNMIND----TFPCWLGSLPLLKILILRSNRFYGPLCKSI---TTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 547 ~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l~~L~~L~ls~n~~~~ 608 (683)
++|++++|.+++ .+|..+..+++|++|++++|++.+...... .......|+.|++.++.+..
T Consensus 373 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred EEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 999999998886 567777888899999999998764311000 01123468888888887764
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.4e-32 Score=290.41 Aligned_cols=63 Identities=16% Similarity=0.284 Sum_probs=33.0
Q ss_pred CCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCC----hhhhhcCcCCccEEEcCCCcCC
Q 043978 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIK----PFSLLNLSSTMTDLDLSGTRIQ 149 (683)
Q Consensus 84 ~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~~L~~L~l~~n~i~ 149 (683)
++|++|+++++.+... .+...+..+++|++|++++|.++... +..+..+ ++|++|++++|.+.
T Consensus 3 ~~l~~L~Ls~~~l~~~--~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~ 69 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDA--RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELG 69 (461)
T ss_dssp EEEEEEEEESCCCCHH--HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCH
T ss_pred ccceehhhhhcccCch--hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCC
Confidence 3456666666655421 23333555666666666666655321 3334444 55555555555554
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=4.6e-29 Score=251.26 Aligned_cols=248 Identities=27% Similarity=0.331 Sum_probs=199.8
Q ss_pred CCCCEEeCCCCCCCC--CCCccCcCCCCCCEEeCCC-CcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcC
Q 043978 60 KELTYLNPSFSNFGG--LVPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSS 136 (683)
Q Consensus 60 ~~L~~L~Ls~~~~~~--~~~~~~~~l~~L~~L~ls~-n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 136 (683)
.++++|+++++.+.+ .+|..|.++++|++|++++ |.+. +.+|..+.++++|++|++++|.+++..|..+..+ +
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-K 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE---SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC-T
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc---ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC-C
Confidence 589999999999998 7889999999999999995 7766 4556678899999999999999988878889998 9
Q ss_pred CccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCC-CCCEEECCCCcCccccCccccCCCCCCEEE
Q 043978 137 TMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSS-PLRELDLSLSDFSGEIPYSIGNLLFLETVD 214 (683)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~-~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 214 (683)
+|++|++++|.+.+..|..+..+++|++|++++| .+.+.++ .+..++ +|++|++++|.+.+..|..+..++ |++|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 9999999999999888888889999999999988 6665555 666666 788888888888777777777776 88888
Q ss_pred ccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccC
Q 043978 215 ITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG 294 (683)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 294 (683)
+++|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++.+|.++..+++|+.|++++|++++
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 888888777777778888888888888887755554 6677788888888888877777777777777777777777776
Q ss_pred cCCCCCCCCCCcEEECCCCc
Q 043978 295 PIDGFQSPNSLEEVHLEKNQ 314 (683)
Q Consensus 295 ~~~~~~~~~~L~~L~L~~n~ 314 (683)
.++....+++|+.+++++|+
T Consensus 283 ~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 283 EIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCCSTTGGGSCGGGTCSSS
T ss_pred cCCCCccccccChHHhcCCC
Confidence 55555566667777777665
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=8.3e-30 Score=281.88 Aligned_cols=411 Identities=12% Similarity=0.071 Sum_probs=210.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCccCcC-CC-CCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCCh----hhh
Q 043978 58 RLKELTYLNPSFSNFGGLVPSEISH-LS-KLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKP----FSL 131 (683)
Q Consensus 58 ~l~~L~~L~Ls~~~~~~~~~~~~~~-l~-~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l 131 (683)
.+++|++|++++|.+++..+..+.. ++ +|++|++++|.. .....++....++++|++|++++|.+++... ..+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 4556666666665555443333433 22 266666655531 1122333444455555555555555443321 122
Q ss_pred hcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCC
Q 043978 132 LNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLE 211 (683)
Q Consensus 132 ~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 211 (683)
..+ ++|++|++++|.+.+.....+ ...+..+++|+.|++++|.+.+ ++..+..+++|+
T Consensus 189 ~~~-~~L~~L~L~~n~~~~~~~~~l--------------------~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~ 246 (592)
T 3ogk_B 189 QHN-TSLEVLNFYMTEFAKISPKDL--------------------ETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLE 246 (592)
T ss_dssp HHC-CCCCEEECTTCCCSSCCHHHH--------------------HHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCC
T ss_pred hcC-CCccEEEeeccCCCccCHHHH--------------------HHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHH
Confidence 333 555555555555442111110 0022334555555555555542 455666667777
Q ss_pred EEEccCCccc---ccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCC-ccccCCCCCcEEEc
Q 043978 212 TVDITYCNFM---GSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP-SWLFTLPSLVSVNL 287 (683)
Q Consensus 212 ~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L 287 (683)
+|+++..... ...+..+..+++|+.++++++.. ..++..+..+++|++|++++|.+++... ..+..+++|+.|++
T Consensus 247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred hhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 7776643222 22334556667777777766432 2455566667778888888777654332 33466778888888
Q ss_pred cCCcccC-cCCCC-CCCCCCcEEECCC-----------CcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccc
Q 043978 288 AWNKLTG-PIDGF-QSPNSLEEVHLEK-----------NQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSF 354 (683)
Q Consensus 288 ~~n~i~~-~~~~~-~~~~~L~~L~L~~-----------n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 354 (683)
+ +.+.. ..+.+ ..+++|++|++++ +.+++.... .....+++|++|+++.+.++..
T Consensus 326 ~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 326 R-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI-----------ALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp E-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH-----------HHHHHCTTCSEEEEEESCCCHH
T ss_pred c-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH-----------HHHhhCccCeEEEeecCCccHH
Confidence 7 33322 22222 2567788888883 344421111 1234578999999977774322
Q ss_pred ccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCC
Q 043978 355 TSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLR 434 (683)
Q Consensus 355 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~ 434 (683)
. .......+++|+.|+++++. ..|.+++.+..
T Consensus 394 ~---~~~l~~~~~~L~~L~l~~~~----------------------------------~~n~l~~~p~~----------- 425 (592)
T 3ogk_B 394 S---LESIGTYLKNLCDFRLVLLD----------------------------------REERITDLPLD----------- 425 (592)
T ss_dssp H---HHHHHHHCCSCCEEEEEECS----------------------------------CCSCCSSCCCH-----------
T ss_pred H---HHHHHhhCCCCcEEEEeecC----------------------------------CCccccCchHH-----------
Confidence 1 10111124444444443211 01111110000
Q ss_pred CCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCc--CCCCCChhhhhccCcccEEECCCCccccc-
Q 043978 435 NNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNN--LSGTIPPCLGNFTTQLITLHLKNNSLEGH- 511 (683)
Q Consensus 435 ~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~~~~~~L~~L~l~~n~l~~~- 511 (683)
..++..+.++++|+.|++++|. +++..+..+....++|++|++++|++++.
T Consensus 426 --------------------------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 426 --------------------------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp --------------------------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred --------------------------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence 0011224456677777776543 44333444444445677777777777653
Q ss_pred ccccccCCCCccEEEcCCCccccc-CchhhhcCCCCcEEEccCCcCCccCCcccc-CCCCCCEEEccCC
Q 043978 512 IHDTFENASNIQSFDLNCNKFEGS-LPRSLAKCVKLEVVNVGNNMINDTFPCWLG-SLPLLKILILRSN 578 (683)
Q Consensus 512 ~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n 578 (683)
.+..+.++++|+.|++++|++++. .+..+..+++|++|++++|++++.....+. .+|.+....+..+
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 334456677777777777776543 233345677777777777777654333332 5566665555544
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=7e-26 Score=227.95 Aligned_cols=227 Identities=20% Similarity=0.241 Sum_probs=169.0
Q ss_pred cCCCcCcEEECCCCcccccC-----CCCCCCceEEeCCCCCCCccC--CCCCCCCcEEEccCCcccCCCC-ccccCCCCC
Q 043978 402 KGWKSLIDLDLSNNFLTHIA-----LHPWKNIRTLDLRNNKIQGSI--LVPPPSTEVFLVSNNKLSGQIP-PYICSLSSL 473 (683)
Q Consensus 402 ~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L 473 (683)
..+++|+.|++++|.++... ...+++|++|++++|.+++.. +..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCC
Confidence 44455555555555554321 113455666666666554321 2356777777777777776554 578889999
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccc-cccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG-HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
++|++++|.+.+..+..+..+. +|++|++++|.+.+ ..+..|..+++|+.|++++|++++..|..|..+++|++|+++
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCcCCccchhhcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 9999999999866666666555 99999999999986 578889999999999999999998888999999999999999
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCC-CCCcEEeCCCCcCCCCCcHHHH-hcchhhcccccccce
Q 043978 553 NNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSF-QALRIIDLSRNEFKDFLPRRNF-TSMEAMKNVDEQATR 630 (683)
Q Consensus 553 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~ls~n~~~~~~p~~~~-~~~~~L~~l~l~~n~ 630 (683)
+|.+++..+..+..+++|++|++++|++.+..+. .+..+ ++|++|++++|++.+..+...| ..+...+.+....+.
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~ 285 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 285 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS--SCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGG
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHH--HHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccc
Confidence 9999988777889999999999999999877653 34566 4899999999999877664444 334555555554444
Q ss_pred e
Q 043978 631 L 631 (683)
Q Consensus 631 ~ 631 (683)
+
T Consensus 286 ~ 286 (306)
T 2z66_A 286 M 286 (306)
T ss_dssp C
T ss_pred c
Confidence 3
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=6.8e-25 Score=220.72 Aligned_cols=248 Identities=20% Similarity=0.198 Sum_probs=154.4
Q ss_pred CeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEE
Q 043978 38 QSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLH 117 (683)
Q Consensus 38 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~ 117 (683)
+.++.+++.++. +|..+. ++|++|++++|.++.+.+..|.++++|++|++++|.+.... ..+..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG-CCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE-EEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCccc--CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc-CcccccccccccCEEE
Confidence 456666666543 343332 47777788777777666666777777888888777665221 1123345677777777
Q ss_pred cCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCC-ccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCc
Q 043978 118 LGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFP-DQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSD 195 (683)
Q Consensus 118 L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~ 195 (683)
+++|.+... +..+..+ ++|++|++++|.+.+..+ ..+..+++|++|++++| .+....+ .+..+++|++|++++|.
T Consensus 85 Ls~n~i~~l-~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 85 LSFNGVITM-SSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CCSCSEEEE-EEEEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCE
T ss_pred CCCCccccC-hhhcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCc
Confidence 777777654 4456666 777778777777775443 45666777777777776 4444333 45556666666666666
Q ss_pred Ccc-ccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCc
Q 043978 196 FSG-EIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPS 274 (683)
Q Consensus 196 ~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 274 (683)
+.+ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 554 3555666666666666666666655566666666666666666666655555566666666666666666655555
Q ss_pred cccCCC-CCcEEEccCCccc
Q 043978 275 WLFTLP-SLVSVNLAWNKLT 293 (683)
Q Consensus 275 ~l~~l~-~L~~L~L~~n~i~ 293 (683)
.+..++ +|+.|++++|.+.
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEE
T ss_pred HHHhhhccCCEEEccCCCee
Confidence 555553 5555555555554
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.7e-24 Score=233.97 Aligned_cols=265 Identities=25% Similarity=0.309 Sum_probs=137.6
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEcc
Q 043978 209 FLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLA 288 (683)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 288 (683)
.++.|+++++.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|+.|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4677777777766 4455443 566667776666663 332 3456666666666665 3333 44566666666
Q ss_pred CCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCC
Q 043978 289 WNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPS 368 (683)
Q Consensus 289 ~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~ 368 (683)
+|.++.... .+++|+.|++++|.+++ +|. .+++|++|++++|.+..++. .+++
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~---------------~l~~L~~L~Ls~N~l~~l~~--------~~~~ 162 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQLTS-LPV---------------LPPGLQELSVSDNQLASLPA--------LPSE 162 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSCCSC-CCC---------------CCTTCCEEECCSSCCSCCCC--------CCTT
T ss_pred CCcCCCCCC---CCCCcCEEECCCCCCCc-CCC---------------CCCCCCEEECcCCcCCCcCC--------ccCC
Confidence 665554332 34455555555555541 221 12445555555554433321 1233
Q ss_pred ccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCC
Q 043978 369 LLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPS 448 (683)
Q Consensus 369 L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 448 (683)
|+.|++++|.++.++ ..+++|+.|++++|.+++ ++..+++
T Consensus 163 --------------------------------------L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~l~~-l~~~~~~ 202 (622)
T 3g06_A 163 --------------------------------------LCKLWAYNNQLTSLP-MLPSGLQELSVSDNQLAS-LPTLPSE 202 (622)
T ss_dssp --------------------------------------CCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC-CCCCCTT
T ss_pred --------------------------------------CCEEECCCCCCCCCc-ccCCCCcEEECCCCCCCC-CCCccch
Confidence 444444444444433 333444455555554443 1122344
Q ss_pred CcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcC
Q 043978 449 TEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLN 528 (683)
Q Consensus 449 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 528 (683)
|+.|++++|.+.. +|. .+++|+.|++++|.++ .+|. .+++|+.|++++|+++.+.. .+++|+.|+++
T Consensus 203 L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~-~lp~----~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls 269 (622)
T 3g06_A 203 LYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLT-SLPV----LPSELKELMVSGNRLTSLPM----LPSGLLSLSVY 269 (622)
T ss_dssp CCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECC
T ss_pred hhEEECcCCcccc-cCC---CCCCCCEEEccCCccC-cCCC----CCCcCcEEECCCCCCCcCCc----ccccCcEEeCC
Confidence 5555555555442 222 1355666666666665 3441 22356666666666654322 34566666666
Q ss_pred CCcccccCchhhhcCCCCcEEEccCCcCCccCCcccc
Q 043978 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLG 565 (683)
Q Consensus 529 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 565 (683)
+|+++ .+|..+..+++|+.|++++|++++..|..+.
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 66666 4455566666666666666666655555444
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=2.2e-28 Score=270.51 Aligned_cols=142 Identities=11% Similarity=0.139 Sum_probs=83.9
Q ss_pred ccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECC----CCccccc-----ccccccCCCCccEEEcCCCc--cccc
Q 043978 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK----NNSLEGH-----IHDTFENASNIQSFDLNCNK--FEGS 535 (683)
Q Consensus 467 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~ 535 (683)
...+++|++|+++.|.+++..+..+....++|+.|+++ .|.+++. .+..+.++++|+.|++++|. +++.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 34467777777766666654444555433467777775 4555542 23335567777777776543 4443
Q ss_pred Cchhhh-cCCCCcEEEccCCcCCcc-CCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCC
Q 043978 536 LPRSLA-KCVKLEVVNVGNNMINDT-FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDF 609 (683)
Q Consensus 536 ~~~~l~-~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ 609 (683)
.+..+. .+++|++|++++|++++. .+..+..+++|++|++++|++++... ......+++|++|++++|++++.
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI-AAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH-HHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH-HHHHHhcCccCeeECcCCcCCHH
Confidence 333333 367777777777777653 33445667777777777777643211 11223567777777777777643
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=230.34 Aligned_cols=282 Identities=16% Similarity=0.125 Sum_probs=211.2
Q ss_pred ccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccC
Q 043978 31 LFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNL 110 (683)
Q Consensus 31 l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l 110 (683)
-..++.....+.+++.++. +|..+. ++|++|++++|.++++.+..|.++++|++|++++|.+.... +..+.++
T Consensus 27 ~~~C~~~~~c~~~~~~l~~--iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l 99 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNS--IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE---EDSFSSL 99 (353)
T ss_dssp CCEECTTSEEECCSTTCSS--CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTC
T ss_pred CCCCCCCeEeeCCCCCccc--cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC---HhhcCCC
Confidence 3455666677888877754 454444 47888888888888777778888888888888888776322 2335778
Q ss_pred CCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCC-ccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCE
Q 043978 111 TKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFP-DQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRE 188 (683)
Q Consensus 111 ~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~ 188 (683)
++|++|++++|.++...+..+..+ ++|++|++++|++....+ ..+..+++|++|++++|..+....+ .+..+++|++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 888888888888888766667888 888888888888885433 4677888888888888743444433 6777888888
Q ss_pred EECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccc---cCCCCCCEEEccC
Q 043978 189 LDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV---SGLLYLTNLDLFG 265 (683)
Q Consensus 189 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~ 265 (683)
|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+ .....++.+++++
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 8888888887778888888888888888888764333334457888888888888876554433 3456788888888
Q ss_pred CcCcc----cCCccccCCCCCcEEEccCCcccCcCCCC-CCCCCCcEEECCCCcCcccCC
Q 043978 266 NSLQG----KVPSWLFTLPSLVSVNLAWNKLTGPIDGF-QSPNSLEEVHLEKNQIHGTIP 320 (683)
Q Consensus 266 n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-~~~~~L~~L~L~~n~i~~~~~ 320 (683)
+.+.+ .+|.++..+++|+.|++++|+++.....+ ..+++|++|++++|++.+..|
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 88774 35677888999999999999998766654 588999999999999886544
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.9e-24 Score=233.75 Aligned_cols=261 Identities=21% Similarity=0.224 Sum_probs=138.7
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccC
Q 043978 257 YLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFS 336 (683)
Q Consensus 257 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~ 336 (683)
+++.|++++|.++ .+|..+. ++|+.|++++|.++.... .+++|++|++++|.++ .+|.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--------------- 98 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV--------------- 98 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC---------------
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC---------------
Confidence 4566666666665 4454443 566666666666654332 3456666666666655 2221
Q ss_pred CCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCc
Q 043978 337 KLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNF 416 (683)
Q Consensus 337 ~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 416 (683)
.+++|++|++++|.+..++. .+++|+.|++++|.++.+|. .+++|+.|++++|.
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~lp~------------------~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSLPV------------------LPPGLQELSVSDNQ 152 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSCCCC------------------CCTTCCEEECCSSC
T ss_pred CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCcCCC------------------CCCCCCEEECcCCc
Confidence 34666666666666555432 34566666666666665542 22556666666666
Q ss_pred ccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccC
Q 043978 417 LTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT 496 (683)
Q Consensus 417 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 496 (683)
+++++. .+++|+.|++++|.+++.. .. +++|+.|++++|.+. .+|.. .+
T Consensus 153 l~~l~~-~~~~L~~L~L~~N~l~~l~-~~------------------------~~~L~~L~Ls~N~l~-~l~~~----~~ 201 (622)
T 3g06_A 153 LASLPA-LPSELCKLWAYNNQLTSLP-ML------------------------PSGLQELSVSDNQLA-SLPTL----PS 201 (622)
T ss_dssp CSCCCC-CCTTCCEEECCSSCCSCCC-CC------------------------CTTCCEEECCSSCCS-CCCCC----CT
T ss_pred CCCcCC-ccCCCCEEECCCCCCCCCc-cc------------------------CCCCcEEECCCCCCC-CCCCc----cc
Confidence 655432 3345555655555555322 33 445555555555554 33322 12
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
+|+.|++++|.++... . .+++|+.|++++|.+++ +| ..+++|++|++++|.++. +|. .+++|+.|+++
T Consensus 202 ~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 202 ELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVY 269 (622)
T ss_dssp TCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred hhhEEECcCCcccccC-C---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCC
Confidence 5555555555555322 1 13455566666665553 23 334556666666666553 332 34556666666
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|++. .+| ..+..+++|+.|++++|++++..|
T Consensus 270 ~N~L~-~lp--~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 270 RNQLT-RLP--ESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp SSCCC-SCC--GGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCCC-cCC--HHHhhccccCEEEecCCCCCCcCH
Confidence 66655 223 234455666666666666654433
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=8.2e-26 Score=228.77 Aligned_cols=225 Identities=21% Similarity=0.235 Sum_probs=147.3
Q ss_pred cccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCC
Q 043978 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKL 113 (683)
Q Consensus 34 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L 113 (683)
.+++++|+|++|.+.. +|..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|
T Consensus 80 ~~~l~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~----~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR----ALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSCCSS--CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC----CCCGGGGGCTTC
T ss_pred ccceeEEEccCCCchh--cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc----cCcHHHhcCcCC
Confidence 4678888888887752 5666777888888888888877 55777777888888888877765 345556777777
Q ss_pred CEEEcCCccCCcCChhhhhc---------CcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCC
Q 043978 114 SLLHLGSTNLSLIKPFSLLN---------LSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSS 184 (683)
Q Consensus 114 ~~L~L~~n~l~~~~~~~l~~---------l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 184 (683)
++|++++|.+.+..|..+.. + ++|++|++++|+++ .+|..+..+++|++|++++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N-------------- 216 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS-------------- 216 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS--------------
T ss_pred CEEECCCCCCccccChhHhhccchhhhccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC--------------
Confidence 77777776666555554433 4 55555555555555 44444555555555555544
Q ss_pred CCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEcc
Q 043978 185 PLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264 (683)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 264 (683)
.+. .+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus 217 ----------~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 217 ----------PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp ----------CCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred ----------CCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 444 244456666666666666666666666666666666666666666666666666666677777777
Q ss_pred CCcCcccCCccccCCCCCcEEEccCCcc
Q 043978 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKL 292 (683)
Q Consensus 265 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i 292 (683)
+|.+.+.+|..+..+++|+.+++..+.+
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCchhhccHHHhhccCceEEeCCHHHH
Confidence 7666666676676777777776665544
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=8.2e-26 Score=232.24 Aligned_cols=251 Identities=18% Similarity=0.147 Sum_probs=129.2
Q ss_pred cCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCE
Q 043978 36 HLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSL 115 (683)
Q Consensus 36 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~ 115 (683)
+|++|++++|.+... .+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ ...+..+.++++|++
T Consensus 53 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 53 AVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS---NLSSSWFKPLSSLTF 128 (353)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS---SCCHHHHTTCTTCSE
T ss_pred cCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC---cCCHhHhCCCccCCE
Confidence 556666665555433 2234555566666666666555555555555666666666655554 111222455566666
Q ss_pred EEcCCccCCcCCh-hhhhcCcCCccEEEcCCC-cCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECC
Q 043978 116 LHLGSTNLSLIKP-FSLLNLSSTMTDLDLSGT-RIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLS 192 (683)
Q Consensus 116 L~L~~n~l~~~~~-~~l~~l~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~ 192 (683)
|++++|.+..... ..+..+ ++|++|++++| .+....+..+..+++|++|++++| .+.+..+ .+..+++|++|+++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEE
T ss_pred EECCCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCC
Confidence 6666655555433 345555 55666666555 344344445555566666666655 4444333 45555556666666
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCC---CCCCCCeeeccCccccc----cCCccccCCCCCCEEEccC
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTG---NLSKATEILFASNHLTG----QLPHHVSGLLYLTNLDLFG 265 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~ 265 (683)
+|.+....+..+..+++|++|++++|.+.+..+..+. ....++.++++++.+.+ .+|..+..+++|++|++++
T Consensus 207 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred CCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 5555422222233455566666666555543333222 23445555555554443 2344455555666666666
Q ss_pred CcCcccCCcc-ccCCCCCcEEEccCCccc
Q 043978 266 NSLQGKVPSW-LFTLPSLVSVNLAWNKLT 293 (683)
Q Consensus 266 n~l~~~~~~~-l~~l~~L~~L~L~~n~i~ 293 (683)
|.++ .+|.. +..+++|+.|++++|++.
T Consensus 287 N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 6555 23333 355556666666665554
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.3e-24 Score=216.06 Aligned_cols=221 Identities=18% Similarity=0.155 Sum_probs=134.4
Q ss_pred cEEECCCCcccccCCCCCCCceEEeCCCCCCCccC---CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCc-C
Q 043978 408 IDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNN-L 483 (683)
Q Consensus 408 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~-i 483 (683)
+.++.+++.++.++....++++.|++++|.+++.. +..+++|++|++++|.+.+..+..+.++++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 44555555555554444455666666666555433 2345566666666666665556666666666666666665 5
Q ss_pred CCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCcc
Q 043978 484 SGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW 563 (683)
Q Consensus 484 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 563 (683)
....|..+..+. +|++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|++|++++|.+++..+..
T Consensus 94 ~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 94 RSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccCHHHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 422244444433 6666666666666666666666666666666666666555555666666666666666666555555
Q ss_pred ccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceee
Q 043978 564 LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 564 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
|..+++|++|++++|++.+..+ ..+..+++|++|++++|++++ +|...|..+++|+.+++++|++.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHP--HAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred hcCccccCEEECCCCcccccCH--hHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCcc
Confidence 6666666666666666665544 234556666666666666664 44455666666666666666664
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=228.86 Aligned_cols=246 Identities=20% Similarity=0.182 Sum_probs=155.2
Q ss_pred CCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEE
Q 043978 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLL 116 (683)
Q Consensus 37 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L 116 (683)
.+.++.++..+.. +|..+. +++++|++++|.+.++.+..|.++++|++|++++|.+.... +..+.++++|++|
T Consensus 45 ~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~---~~~~~~l~~L~~L 117 (440)
T 3zyj_A 45 FSKVICVRKNLRE--VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE---IGAFNGLANLNTL 117 (440)
T ss_dssp SCEEECCSCCCSS--CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC---GGGGTTCSSCCEE
T ss_pred CCEEEeCCCCcCc--CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC---hhhccCCccCCEE
Confidence 5667777766643 454444 57888888888888777777888888888888887765322 2345677777777
Q ss_pred EcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCc
Q 043978 117 HLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSD 195 (683)
Q Consensus 117 ~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~ 195 (683)
++++|.++.+.+..|..+ ++|++|++++|.+....+..+..+++|++|++++|..+....+ .+..+++|++|++++|.
T Consensus 118 ~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp ECCSSCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred ECCCCcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 777777777766667777 7777777777777765556677777777777776533333322 45556666666666666
Q ss_pred CccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCcc
Q 043978 196 FSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSW 275 (683)
Q Consensus 196 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 275 (683)
+. .+| .+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.++...+..
T Consensus 197 l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 197 LR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp CS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred Cc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 55 333 3555556666666666655555555555555666666555555555555555555555555555555444444
Q ss_pred ccCCCCCcEEEccCCcc
Q 043978 276 LFTLPSLVSVNLAWNKL 292 (683)
Q Consensus 276 l~~l~~L~~L~L~~n~i 292 (683)
+..+++|+.|++++|.+
T Consensus 275 ~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSCTTCCEEECCSSCE
T ss_pred hccccCCCEEEcCCCCc
Confidence 45555555555555544
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.3e-24 Score=231.12 Aligned_cols=248 Identities=20% Similarity=0.172 Sum_probs=199.6
Q ss_pred CCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEE
Q 043978 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLL 116 (683)
Q Consensus 37 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L 116 (683)
.+.++.++..+.. +|..+. +++++|++++|.++++.+..|.++++|++|++++|.+.... +..+.++++|++|
T Consensus 56 ~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTRRGLSE--VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE---VGAFNGLASLNTL 128 (452)
T ss_dssp SCEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEE
T ss_pred CcEEEECCCCcCc--cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC---hhhccCcccCCEE
Confidence 4667777776643 454443 57888888888888888888888888888888888776332 2346788888888
Q ss_pred EcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCc
Q 043978 117 HLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSD 195 (683)
Q Consensus 117 ~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~ 195 (683)
++++|.++...+..|..+ ++|++|++++|++....+..+..+++|++|++++|..+....+ .+..+++|++|++++|.
T Consensus 129 ~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp ECCSSCCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCCccChhhhccc-CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 888888888877778888 8889999988888876667788888999999888634444433 67788889999999988
Q ss_pred CccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCcc
Q 043978 196 FSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSW 275 (683)
Q Consensus 196 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 275 (683)
+.+ +| .+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..
T Consensus 208 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 208 IKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred ccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 874 33 5788889999999999998888888899999999999999998888888899999999999999998777777
Q ss_pred ccCCCCCcEEEccCCcccC
Q 043978 276 LFTLPSLVSVNLAWNKLTG 294 (683)
Q Consensus 276 l~~l~~L~~L~L~~n~i~~ 294 (683)
+..+++|+.|++++|.+..
T Consensus 286 ~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp STTCTTCCEEECCSSCEEC
T ss_pred hccccCCCEEEccCCCcCC
Confidence 8889999999999997754
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.3e-24 Score=216.04 Aligned_cols=220 Identities=20% Similarity=0.217 Sum_probs=154.2
Q ss_pred CcCcEEECCCCcccccC---CCCCCCceEEeCCCCCCCcc---CCCCCCCCcEEEccCCc-ccCCCCccccCCCCCCEEE
Q 043978 405 KSLIDLDLSNNFLTHIA---LHPWKNIRTLDLRNNKIQGS---ILVPPPSTEVFLVSNNK-LSGQIPPYICSLSSLKYLS 477 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~n~l~~~---~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~ 477 (683)
++++.|++++|.++.+. +..+++|++|++++|.+++. .+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 34555555555554443 22445555555555555543 23345666777777775 6655577788888888888
Q ss_pred cCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCC
Q 043978 478 LSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIN 557 (683)
Q Consensus 478 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 557 (683)
+++|.+.+..|..+..+. +|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+.
T Consensus 112 l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 888888754455555544 8888888888888777777888888888888888888776677888888888888888888
Q ss_pred ccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccc
Q 043978 558 DTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQAT 629 (683)
Q Consensus 558 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n 629 (683)
+..|.+|..+++|+.|++++|++.+..+ ..+..+++|++|++++|++.+..+...+ +..++.+....+
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~N~~~c~~~~~~~--~~~l~~~~~~~~ 258 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPT--EALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSS 258 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCH--HHHTTCTTCCEEECCSSCEECSGGGHHH--HHHHHHCCSEEC
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCH--HHcccCcccCEEeccCCCccCCCCcHHH--HHHHHhcccccC
Confidence 8778888888888888888888876432 3356788888888888888876664433 233444444333
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=230.14 Aligned_cols=246 Identities=24% Similarity=0.187 Sum_probs=213.6
Q ss_pred EEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEE
Q 043978 10 IGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHL 89 (683)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 89 (683)
..++.++ ..++ .++. .+ .+++++|+|++|.+... .+..|.++++|++|++++|.+.++.+..|.++++|++|
T Consensus 46 ~~v~c~~--~~l~-~iP~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 46 SKVICVR--KNLR-EVPD--GI--STNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp CEEECCS--CCCS-SCCS--CC--CTTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CEEEeCC--CCcC-cCCC--CC--CCCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 4556555 5554 3444 33 26899999999998766 56789999999999999999999989999999999999
Q ss_pred eCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCC-cCCCCCCccCCCCCCCcEEEcc
Q 043978 90 GLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGT-RIQGNFPDQIFLLPNLRVLYLC 168 (683)
Q Consensus 90 ~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~l~ 168 (683)
++++|.++.... ..+..+++|++|++++|.+....+..|..+ ++|++|++++| .+....+..+..+++|++|+++
T Consensus 118 ~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 118 ELFDNRLTTIPN---GAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp ECCSSCCSSCCT---TTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred ECCCCcCCeeCH---hHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 999998873332 346899999999999999999988899999 99999999995 4554445678999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccC
Q 043978 169 GNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQL 248 (683)
Q Consensus 169 ~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 248 (683)
+| .+. .++.+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|+++...
T Consensus 194 ~n-~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 194 MC-NLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp TS-CCS-SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CC-cCc-cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 99 665 3467888999999999999999888999999999999999999999988999999999999999999999888
Q ss_pred CccccCCCCCCEEEccCCcCc
Q 043978 249 PHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 249 ~~~l~~l~~L~~L~l~~n~l~ 269 (683)
+..+..+++|+.|++++|.+.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 888999999999999999876
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.2e-24 Score=229.33 Aligned_cols=246 Identities=23% Similarity=0.253 Sum_probs=199.2
Q ss_pred CCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccE
Q 043978 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTD 140 (683)
Q Consensus 61 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~ 140 (683)
..+.++.++..++.+ |..+. +++++|++++|.+.... +..+.++++|++|++++|.+..+.+..|..+ ++|++
T Consensus 55 ~~~~v~c~~~~l~~i-P~~~~--~~l~~L~L~~n~i~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~ 127 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEV-PQGIP--SNTRYLNLMENNIQMIQ---ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL-ASLNT 127 (452)
T ss_dssp SSCEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCE
T ss_pred CCcEEEECCCCcCcc-CCCCC--CCccEEECcCCcCceEC---HHHcCCCCCCCEEECCCCccCCcChhhccCc-ccCCE
Confidence 456788888877755 44443 68899999998887432 3346888999999999999988888888888 89999
Q ss_pred EEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCcCcccc-CccccCCCCCCEEEccCC
Q 043978 141 LDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEI-PYSIGNLLFLETVDITYC 218 (683)
Q Consensus 141 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~ 218 (683)
|++++|+++...+..+..+++|++|++++| .+....+ .+..+++|+.|++++|...+.+ +..|..+++|++|++++|
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 999999998776777888999999999998 6665544 6788899999999885433344 446888999999999999
Q ss_pred cccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCC
Q 043978 219 NFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG 298 (683)
Q Consensus 219 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 298 (683)
.+.+. | .+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|+++...+.
T Consensus 207 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 207 NIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp CCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 88743 3 577888999999999999888888899999999999999999888888888899999999999988875544
Q ss_pred -CCCCCCCcEEECCCCcCc
Q 043978 299 -FQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 299 -~~~~~~L~~L~L~~n~i~ 316 (683)
+..+++|++|++++|++.
T Consensus 285 ~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SSTTCTTCCEEECCSSCEE
T ss_pred HhccccCCCEEEccCCCcC
Confidence 447889999999999875
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.1e-25 Score=222.38 Aligned_cols=234 Identities=17% Similarity=0.131 Sum_probs=178.7
Q ss_pred CCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCc
Q 043978 59 LKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTM 138 (683)
Q Consensus 59 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L 138 (683)
..++++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+..+ |..+..+ ++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~----~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l-~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM----ELPDTMQQFAGLETLTLARNPLRAL-PASIASL-NRL 152 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC----CCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGC-TTC
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc----chhHHHhccCCCCEEECCCCccccC-cHHHhcC-cCC
Confidence 357777788777776 34556666777777777777665 2333345666666666666666633 5556666 666
Q ss_pred cEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCC
Q 043978 139 TDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYC 218 (683)
Q Consensus 139 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 218 (683)
++|++++|.+.+.+|..+.. ..+. ..+..+++|++|++++|.+. .+|..+..+++|++|++++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~------~~~~---------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLAS------TDAS---------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEE------EC-C---------CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred CEEECCCCCCccccChhHhh------ccch---------hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence 66666665555555543322 0000 12344778888888888888 78889999999999999999
Q ss_pred cccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccC-cCC
Q 043978 219 NFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PID 297 (683)
Q Consensus 219 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~ 297 (683)
.+.+ +|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+ .+.
T Consensus 217 ~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 217 PLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 9984 66789999999999999999999999999999999999999999999999999999999999999998877 445
Q ss_pred CCCCCCCCcEEECCCCcCc
Q 043978 298 GFQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 298 ~~~~~~~L~~L~L~~n~i~ 316 (683)
.+..+++++.+++..+.+.
T Consensus 296 ~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 296 LIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGGSCTTCEEECCGGGSC
T ss_pred HHhhccCceEEeCCHHHHH
Confidence 5669999999999988765
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3.1e-26 Score=231.29 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=98.7
Q ss_pred CCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccc-cCCCCccEEEcCCCcccccCchhhhcCCCCcE
Q 043978 470 LSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTF-ENASNIQSFDLNCNKFEGSLPRSLAKCVKLEV 548 (683)
Q Consensus 470 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 548 (683)
+++|++|++++|.+.+..+..+..+. +|++|++++|++++..+..+ ..+++|+.|++++|.+++. + ....+++|++
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~ 195 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKT 195 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCE
T ss_pred cCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCE
Confidence 34566666666666533333333333 66677777776666555544 3567777777777777644 2 2334677777
Q ss_pred EEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhccccccc
Q 043978 549 VNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQA 628 (683)
Q Consensus 549 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~ 628 (683)
|++++|.+++. |..+..+++|+.|++++|++.. +| ..+..+++|+.|++++|++.+..+..++..++.|+.+++++
T Consensus 196 L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~--~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 196 LDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IE--KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp EECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-EC--TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hh--hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 77777777753 3446777777788888777764 33 23466778888888888887333446788888888888874
Q ss_pred c
Q 043978 629 T 629 (683)
Q Consensus 629 n 629 (683)
+
T Consensus 272 ~ 272 (317)
T 3o53_A 272 V 272 (317)
T ss_dssp H
T ss_pred c
Confidence 4
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=5.8e-26 Score=229.28 Aligned_cols=106 Identities=20% Similarity=0.221 Sum_probs=63.4
Q ss_pred CCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcE
Q 043978 469 SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEV 548 (683)
Q Consensus 469 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 548 (683)
.+++|++|++++|.++ .++... . .++|++|++++|++++..+. |..+++|+.|++++|+++ .+|..+..+++|++
T Consensus 167 ~l~~L~~L~L~~N~l~-~~~~~~-~-l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIY-DVKGQV-V-FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (317)
T ss_dssp GTTTCCEEECTTSCCC-EEECCC-C-CTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred ccCcCCEEECCCCcCc-cccccc-c-cccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence 4566666666666665 233221 1 23666666666666654333 566666666666666666 34555666666677
Q ss_pred EEccCCcCC-ccCCccccCCCCCCEEEccCCc
Q 043978 549 VNVGNNMIN-DTFPCWLGSLPLLKILILRSNR 579 (683)
Q Consensus 549 L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~ 579 (683)
|++++|++. +..|.++..+++|+.+++++|.
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 777766666 4555666666666666666443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.1e-25 Score=224.70 Aligned_cols=241 Identities=17% Similarity=0.143 Sum_probs=165.3
Q ss_pred CCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC-----------CCCCceEEeCC
Q 043978 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH-----------PWKNIRTLDLR 434 (683)
Q Consensus 366 ~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----------~~~~L~~L~l~ 434 (683)
.++|+.|++++|.+ .+|..+. ..++.|++++|.++..... .+++|++|+++
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~-----------------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 103 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFT-----------------DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHH-----------------HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEE
T ss_pred CCCceeEeeccccc-ccHHHHH-----------------HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEcc
Confidence 44566666666665 5554321 1155566666665432211 35667777777
Q ss_pred CCCCCccCC-----CCCCCCcEEEccCCcccCCCCccccCC-----CCCCEEEcCCCcCCCCCChhhhhccCcccEEECC
Q 043978 435 NNKIQGSIL-----VPPPSTEVFLVSNNKLSGQIPPYICSL-----SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK 504 (683)
Q Consensus 435 ~n~l~~~~~-----~~~~~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~ 504 (683)
+|++++..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|++.+..|..+..+. +|++|+++
T Consensus 104 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls 181 (312)
T 1wwl_A 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP-ALSTLDLS 181 (312)
T ss_dssp EEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS-SCCEEECC
T ss_pred CCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC-CCCEEECC
Confidence 776664332 3567788888888888766 6666666 8888888888888755556666554 88888888
Q ss_pred CCccccc--cccc--ccCCCCccEEEcCCCcccc---cCchhhhcCCCCcEEEccCCcCCccCC-ccccCCCCCCEEEcc
Q 043978 505 NNSLEGH--IHDT--FENASNIQSFDLNCNKFEG---SLPRSLAKCVKLEVVNVGNNMINDTFP-CWLGSLPLLKILILR 576 (683)
Q Consensus 505 ~n~l~~~--~~~~--~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~ 576 (683)
+|++.+. .+.. +..+++|+.|++++|++++ .....+..+++|++|++++|.+.+..| ..+..+++|++|+++
T Consensus 182 ~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 8887654 2223 3778888888888888873 222445677888889998888887664 455677888899999
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceeeec
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYM 634 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~~~ 634 (683)
+|+++ .+|... . ++|++||+++|++++. |. |..+++|+.+++++|+++..
T Consensus 262 ~N~l~-~ip~~~--~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 262 FTGLK-QVPKGL--P--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TSCCS-SCCSSC--C--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTTTCC
T ss_pred CCccC-hhhhhc--c--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCCCCC
Confidence 88887 444322 2 7888889999988864 64 78888888888888877543
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4.1e-23 Score=203.30 Aligned_cols=204 Identities=20% Similarity=0.213 Sum_probs=155.2
Q ss_pred CcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccC---CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCC
Q 043978 405 KSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHN 481 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n 481 (683)
...+.++++++.++.++....++++.|++++|.+++.. +..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 35788999999988877665677888888888887544 346778888888888888666666778888888888888
Q ss_pred cCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCC
Q 043978 482 NLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP 561 (683)
Q Consensus 482 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 561 (683)
.+. .+|...+...++|++|++++|++++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..+
T Consensus 96 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 887 4444433333488888888888887777778888888888888888886666667888888888888888887666
Q ss_pred ccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 562 CWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 562 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
..|..+++|++|++++|++.+..+ ..+..+++|+.|++++|++.+..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCH--HHhccccCCCEEEecCCCeeCCCc
Confidence 677788888888888888875433 234567788888888888876554
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.7e-24 Score=231.24 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=79.1
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccccccccc-CCCCccEEEcCCCcccccCchhhhcCCCCcEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFE-NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVV 549 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 549 (683)
++|+.|++++|.+.+..|..+..+. +|+.|++++|.+++..+..|. .+++|+.|++++|.+++..+ +..+++|++|
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L 196 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTL 196 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEE
Confidence 4455555555555433333333332 555555555555554444443 45555555555555554321 2235566666
Q ss_pred EccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccc
Q 043978 550 NVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQ 627 (683)
Q Consensus 550 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~ 627 (683)
++++|.+++..| .+..+++|+.|++++|.+.+. | ..+..+++|+.|++++|++.+..+..++..++.|+.+++.
T Consensus 197 ~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p--~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 197 DLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-E--KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-C--TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-c--hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 666666654333 355566666666666666542 2 1234556666666666666522233566666666666664
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.7e-27 Score=263.61 Aligned_cols=429 Identities=14% Similarity=0.120 Sum_probs=208.4
Q ss_pred cEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCccc--CC-C------------CCCCCCCCEEECCCCcCccccCcc
Q 043978 139 TDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGY--LP-K------------CNWSSPLRELDLSLSDFSGEIPYS 203 (683)
Q Consensus 139 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~-~------------~~~~~~L~~L~L~~~~~~~~~~~~ 203 (683)
+.++++.+... .....+..+++|++|+++++...... .+ . ...+++|++|++++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 46666655332 12234567889999999988433211 11 1 123556777777776665544444
Q ss_pred cc-CCCCCCEEEccCC-ccccc-CCCCCCCCCCCCeeeccCccccccCCcccc----CCCCCCEEEccCCc--Cccc-CC
Q 043978 204 IG-NLLFLETVDITYC-NFMGS-IPTSTGNLSKATEILFASNHLTGQLPHHVS----GLLYLTNLDLFGNS--LQGK-VP 273 (683)
Q Consensus 204 ~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~----~l~~L~~L~l~~n~--l~~~-~~ 273 (683)
+. .+++|++|++++| .+... ++..+..+++|++|++++|.+++..+.++. .+++|++|++++|. +... ++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 43 4667777777666 33321 222233566666666666665544433332 44566666666664 1110 11
Q ss_pred ccccCCCCCcEEEccCC-cccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEE-eCCCCCc
Q 043978 274 SWLFTLPSLVSVNLAWN-KLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFL-DLSNNNL 351 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L-~l~~n~l 351 (683)
.....+++|+.|++++| .+.+....+..+++|++|+++.+... ..+..+. .+. ..+.++++|+.+ .+.+...
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~----~l~-~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-VRPDVYS----GLS-VALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-CCHHHHH----HHH-HHHHTCTTCCEEECCBTCCG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-cchhhHH----HHH-HHHhcCCCcccccCCcccch
Confidence 11223466666666665 22221112224555666665444210 0000000 000 134455555555 2322221
Q ss_pred cccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC----CCCC
Q 043978 352 LSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH----PWKN 427 (683)
Q Consensus 352 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~ 427 (683)
..+ ......+++|++|++++|.+..-. .......+++|+.|++++| ++..... .+++
T Consensus 279 ~~l-----~~~~~~~~~L~~L~L~~~~l~~~~-------------l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 279 AYL-----PAVYSVCSRLTTLNLSYATVQSYD-------------LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp GGG-----GGGHHHHTTCCEEECTTCCCCHHH-------------HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hhH-----HHHHHhhCCCCEEEccCCCCCHHH-------------HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 111 011113455555555555433100 0000134455555555544 2211110 2344
Q ss_pred ceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccc-cCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECC--
Q 043978 428 IRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYI-CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK-- 504 (683)
Q Consensus 428 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~-- 504 (683)
|++|+++++.-.+ ....+.+++.....+ .++++|+.|.++.|.+++..+..+....++|+.|+++
T Consensus 340 L~~L~L~~~~~~g------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 340 LRELRVFPSEPFV------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp CCEEEEECSCTTC------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred CCEEEEecCcccc------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 4444442211000 001122221111112 2367777777766666644344444333477777777
Q ss_pred C----Cccccc-----ccccccCCCCccEEEcCCCcccccCchhhhc-CCCCcEEEccCCcCCccCCccc-cCCCCCCEE
Q 043978 505 N----NSLEGH-----IHDTFENASNIQSFDLNCNKFEGSLPRSLAK-CVKLEVVNVGNNMINDTFPCWL-GSLPLLKIL 573 (683)
Q Consensus 505 ~----n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L 573 (683)
+ +.+++. .+..+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L 486 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL 486 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEE
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEE
Confidence 3 344421 222355677788888866 555444444544 7778888888887766544444 467788888
Q ss_pred EccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 574 ILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 574 ~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++++|++++... ......+++|++|++++|+++
T Consensus 487 ~L~~n~~~~~~~-~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 487 EIRDCPFGDKAL-LANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEESCSCCHHHH-HHTGGGGGGSSEEEEESSCCB
T ss_pred ECcCCCCcHHHH-HHHHHhCCCCCEEeeeCCCCC
Confidence 888887743211 112234677888888888774
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=9.4e-27 Score=257.56 Aligned_cols=106 Identities=13% Similarity=0.011 Sum_probs=55.0
Q ss_pred CEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccC------------CHHHHHccCCCCCEEEcCCccCCcCChhh
Q 043978 63 TYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQR------------TFDLLASNLTKLSLLHLGSTNLSLIKPFS 130 (683)
Q Consensus 63 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 130 (683)
+.++++.+... .....+.++++|++|+++++....... .++.....+++|++|+++++.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 34555443321 122345667778888887764221100 12233455667777777766665554555
Q ss_pred hh-cCcCCccEEEcCCC-cCCCC-CCccCCCCCCCcEEEccCC
Q 043978 131 LL-NLSSTMTDLDLSGT-RIQGN-FPDQIFLLPNLRVLYLCGN 170 (683)
Q Consensus 131 l~-~l~~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~l~~n 170 (683)
+. .+ ++|++|++++| .++.. ++.....+++|++|++++|
T Consensus 125 l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 166 (594)
T 2p1m_B 125 IAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166 (594)
T ss_dssp HHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC
Confidence 54 34 66666666666 33321 2222235566666666665
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.9e-22 Score=196.30 Aligned_cols=203 Identities=24% Similarity=0.289 Sum_probs=144.4
Q ss_pred CceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCC
Q 043978 427 NIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNN 506 (683)
Q Consensus 427 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n 506 (683)
..+.++++++.++......++++++|++++|++.+..+..|.++++|++|++++|.+. .+|...+...++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCC
Confidence 4567777777777655445667777777777777666667777777777777777776 555554433347777777777
Q ss_pred cccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCC
Q 043978 507 SLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCK 586 (683)
Q Consensus 507 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 586 (683)
++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE- 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-
Confidence 7777666777777777777777777776666677777777777777777776665667777777777777777765433
Q ss_pred CccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceeee
Q 043978 587 SITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQY 633 (683)
Q Consensus 587 ~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~~ 633 (683)
..+..+++|++|++++|++++ +|...|..++.|+.+++++|++.-
T Consensus 175 -~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 -GAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp -TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -hHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCeeC
Confidence 234566777777777777774 555667777777777777777643
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=4.9e-25 Score=221.95 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=17.7
Q ss_pred CCCCCEEEcCCccCCcCChhhh--hcCcCCccEEEcCCCcCCC
Q 043978 110 LTKLSLLHLGSTNLSLIKPFSL--LNLSSTMTDLDLSGTRIQG 150 (683)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~l--~~l~~~L~~L~l~~n~i~~ 150 (683)
+++|++|++++|.+++..|..+ ..+ ++|++|++++|++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~ 135 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATG-PDLNILNLRNVSWAT 135 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCS-CCCSEEEEESCBCSS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcC-CCccEEEccCCCCcc
Confidence 4444444444444444333332 333 444444444444443
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.9e-22 Score=198.78 Aligned_cols=208 Identities=22% Similarity=0.210 Sum_probs=161.2
Q ss_pred cCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccC---CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEc
Q 043978 402 KGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSL 478 (683)
Q Consensus 402 ~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 478 (683)
..++++++++++++.++.++....+.++.|++++|.+++.. +..+++|++|++++|.+++..+ ...+++|++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred cccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 45566666666666666665554566667777777666432 3456777777777777775433 267889999999
Q ss_pred CCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCc
Q 043978 479 SHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND 558 (683)
Q Consensus 479 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 558 (683)
++|.+. .+|..+..+. +|++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|++|++++|+++.
T Consensus 85 s~N~l~-~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCS-SCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCcCC-cCchhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 999998 7887776665 89999999999998888889999999999999999998877888899999999999999987
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHh
Q 043978 559 TFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFT 616 (683)
Q Consensus 559 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~ 616 (683)
..+..|..+++|+.|++++|++.. +| ......+.|+.+++++|++.+.....+|.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~-ip--~~~~~~~~L~~l~L~~Np~~C~c~~~~l~ 217 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYT-IP--KGFFGSHLLPFAFLHGNPWLCNCEILYFR 217 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCC-CC--TTTTTTCCCSEEECCSCCBCCSGGGHHHH
T ss_pred cCHHHhcCcCCCCEEECCCCcCCc-cC--hhhcccccCCeEEeCCCCccCcCccHHHH
Confidence 777778889999999999999984 33 34456778999999999998765544443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.1e-22 Score=201.29 Aligned_cols=220 Identities=22% Similarity=0.210 Sum_probs=160.8
Q ss_pred EEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCccC---CC
Q 043978 371 KLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGSI---LV 444 (683)
Q Consensus 371 ~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~---~~ 444 (683)
.++..+..+.++|.. -.++++.|++++|.++++.. ..+++|++|++++|.+++.. +.
T Consensus 11 ~~~c~~~~l~~ip~~-----------------l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (276)
T 2z62_A 11 TYQCMELNFYKIPDN-----------------LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73 (276)
T ss_dssp EEECTTSCCSSCCSS-----------------SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred eEEecCCCccccCCC-----------------CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHcc
Confidence 455666666666642 12468889999998887643 46678888888888887543 34
Q ss_pred CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccc-ccccccCCCCcc
Q 043978 445 PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGH-IHDTFENASNIQ 523 (683)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 523 (683)
.+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+. +|++|++++|++++. .|..|..+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCC
Confidence 677888888888888877777788888888888888888743333455444 888888888888764 477788888888
Q ss_pred EEEcCCCcccccCchhhhcCCCCc----EEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEE
Q 043978 524 SFDLNCNKFEGSLPRSLAKCVKLE----VVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRII 599 (683)
Q Consensus 524 ~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 599 (683)
.|++++|++++..+..+..+++|+ +|++++|.+.+..+..+. ..+|+.|++++|++.+..+ ..+..+++|++|
T Consensus 153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L 229 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPD--GIFDRLTSLQKI 229 (276)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCT--TTTTTCCSCCEE
T ss_pred EEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCH--hHhcccccccEE
Confidence 888888888877777777666666 788888888765555444 3478888888888875533 334667888888
Q ss_pred eCCCCcCCCCCc
Q 043978 600 DLSRNEFKDFLP 611 (683)
Q Consensus 600 ~ls~n~~~~~~p 611 (683)
++++|++.+.+|
T Consensus 230 ~l~~N~~~c~c~ 241 (276)
T 2z62_A 230 WLHTNPWDCSCP 241 (276)
T ss_dssp ECCSSCBCCCTT
T ss_pred EccCCcccccCC
Confidence 888888887666
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.4e-23 Score=221.11 Aligned_cols=239 Identities=22% Similarity=0.174 Sum_probs=202.7
Q ss_pred CCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCC
Q 043978 336 SKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNN 415 (683)
Q Consensus 336 ~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 415 (683)
..+++|+.|++++|.+..+++ ..+..+++|+.|++++|.+...+. +..+++|+.|++++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~----------------l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYETLD----------------LESLSTLRTLDLNNN 90 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCG----GGGTTCTTCCEEECTTSCCEEEEE----------------CTTCTTCCEEECCSS
T ss_pred ccCCCccEEEeeCCcCCCCCH----HHHhCCCCCCEEEeeCCCCCCCcc----------------cccCCCCCEEEecCC
Confidence 455689999999999876643 356799999999999998875433 278899999999999
Q ss_pred cccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhcc
Q 043978 416 FLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFT 495 (683)
Q Consensus 416 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 495 (683)
.+++++.. ++|+.|++++|.+++..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+....
T Consensus 91 ~l~~l~~~--~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l 168 (487)
T 3oja_A 91 YVQELLVG--PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (487)
T ss_dssp EEEEEEEC--TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred cCCCCCCC--CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence 99987643 8999999999999988888889999999999999998888999999999999999999977777776444
Q ss_pred CcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEc
Q 043978 496 TQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILIL 575 (683)
Q Consensus 496 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 575 (683)
++|+.|++++|.+++..+ +..+++|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++
T Consensus 169 ~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred CcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 599999999999997743 4458999999999999996554 59999999999999999985 6777999999999999
Q ss_pred cCCcCc-ccCCCCccccCCCCCcEEeCC
Q 043978 576 RSNRFY-GPLCKSITTFSFQALRIIDLS 602 (683)
Q Consensus 576 ~~n~l~-~~~~~~~~~~~l~~L~~L~ls 602 (683)
++|++. +.+| ..+..++.|+.++++
T Consensus 245 ~~N~l~c~~~~--~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGNGFHCGTLR--DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCBCHHHHH--HHHTTCHHHHHHHHH
T ss_pred CCCCCcCcchH--HHHHhCCCCcEEecc
Confidence 999987 3332 334567778877775
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.8e-23 Score=206.00 Aligned_cols=205 Identities=19% Similarity=0.242 Sum_probs=144.5
Q ss_pred CcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccC-CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCc
Q 043978 405 KSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNN 482 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~ 482 (683)
++|+.|++++|.++... +..+++|+.|++++|.+++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 34444444444444332 223444444555554444321 2345666677777777776666778888888888888888
Q ss_pred CCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCc
Q 043978 483 LSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPC 562 (683)
Q Consensus 483 i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 562 (683)
+.+..+..+..+. +|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+.
T Consensus 121 l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 121 LQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp CCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCccCHHHhccCC-CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence 8844333344444 888888888888887777788888899999999988877777788888899999999988887777
Q ss_pred cccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchh
Q 043978 563 WLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEA 620 (683)
Q Consensus 563 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~ 620 (683)
.+..+++|+.|++++|++.+ .++.|+.++++.|.++|.+|. .++.+..
T Consensus 200 ~~~~l~~L~~L~l~~N~~~~---------~~~~l~~l~~~~n~~~g~ip~-~~~~~~~ 247 (272)
T 3rfs_A 200 VFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVRN-SAGSVAP 247 (272)
T ss_dssp TTTTCTTCCEEECCSSCBCC---------CTTTTHHHHHHHHHTGGGBBC-TTSCBCG
T ss_pred HHhCCcCCCEEEccCCCccc---------cCcHHHHHHHHHHhCCCcccC-cccccCC
Confidence 78888899999999888753 356788888888888888883 3444443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=7.4e-22 Score=195.84 Aligned_cols=202 Identities=16% Similarity=0.139 Sum_probs=176.6
Q ss_pred CCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEEC
Q 043978 424 PWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHL 503 (683)
Q Consensus 424 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l 503 (683)
.++++++++++++.++......++.+++|++++|.+.+..+..|..+++|++|++++|.++ .++.. .. .++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~-l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GT-LPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SC-CTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CC-CCcCCEEEC
Confidence 5678999999999999877667889999999999999888889999999999999999998 45443 33 459999999
Q ss_pred CCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 504 KNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 504 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
++|+++ ..|..+..+++|+.|++++|++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|++...
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 999998 4567889999999999999999988888999999999999999999988888889999999999999999865
Q ss_pred CCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceeee
Q 043978 584 LCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQY 633 (683)
Q Consensus 584 ~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~~ 633 (683)
.+ ..+..+++|++|++++|+++ .+|...| ....|+.+++++|++.-
T Consensus 164 ~~--~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 164 PA--GLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CT--TTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBCC
T ss_pred CH--HHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCccC
Confidence 43 34567899999999999999 6886544 56689999999999853
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=3.8e-21 Score=190.05 Aligned_cols=203 Identities=25% Similarity=0.222 Sum_probs=145.0
Q ss_pred CCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCcCccccCccccCCCCCCEEE
Q 043978 136 STMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVD 214 (683)
Q Consensus 136 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 214 (683)
++|++|++++|.+++..+..+..+++|++|++++| .+....+ .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 56677777777766555556666777777777776 4444443 566667777777777777766666777788888888
Q ss_pred ccCCcccccCCCCCCCCCCCCeeeccCcccccc-CCccccCCCCCCEEEccCCcCcccCCccccCCCCCc----EEEccC
Q 043978 215 ITYCNFMGSIPTSTGNLSKATEILFASNHLTGQ-LPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLV----SVNLAW 289 (683)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~ 289 (683)
+++|.+.+..+..++.+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 888877766666677788888888888887763 477788888888888888888766666666655555 788888
Q ss_pred CcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCc
Q 043978 290 NKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNL 351 (683)
Q Consensus 290 n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 351 (683)
|.+....+......+|++|++++|.+++. |. ..+..+++|+.|++++|.+
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~-----------~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLKSV-PD-----------GIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCSCC-CT-----------TTTTTCCSCCEEECCSSCB
T ss_pred CcccccCccccCCCcccEEECCCCceeec-CH-----------hHhcccccccEEEccCCcc
Confidence 88877665555556788888888887732 22 2466778888888888874
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.7e-21 Score=186.32 Aligned_cols=177 Identities=20% Similarity=0.215 Sum_probs=137.4
Q ss_pred EEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccc
Q 043978 430 TLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509 (683)
Q Consensus 430 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 509 (683)
.++++++.++......++.++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+. +|++|++++|+++
T Consensus 18 ~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 96 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLA 96 (251)
T ss_dssp EEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCC
T ss_pred EEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCccc
Confidence 344444444433333345566666666666666777788889999999999998855555555554 8999999999998
Q ss_pred ccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCcc
Q 043978 510 GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSIT 589 (683)
Q Consensus 510 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 589 (683)
+..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|++.+..+ ..
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~ 174 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH--GA 174 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TT
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH--HH
Confidence 8888888889999999999999987777778889999999999999987777788889999999999999886544 34
Q ss_pred ccCCCCCcEEeCCCCcCCCC
Q 043978 590 TFSFQALRIIDLSRNEFKDF 609 (683)
Q Consensus 590 ~~~l~~L~~L~ls~n~~~~~ 609 (683)
+..+++|++|++++|++.+.
T Consensus 175 ~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSCCBCTT
T ss_pred HhCCCCCCEEEeeCCceeCC
Confidence 56788999999999999876
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=7.1e-22 Score=194.57 Aligned_cols=228 Identities=18% Similarity=0.120 Sum_probs=148.0
Q ss_pred ccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCC
Q 043978 33 RLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTK 112 (683)
Q Consensus 33 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~ 112 (683)
.++++..+++..+.+.+. .....+++|+.|+++++.+... ..+..+++|++|++++|.+.. + ..+..+++
T Consensus 17 ~~~~l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~----~-~~l~~l~~ 86 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD----I-SALKELTN 86 (272)
T ss_dssp HHHHHHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC----C-GGGTTCTT
T ss_pred hHHHHHHHHhcCcccccc---cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC----c-hhhcCCCC
Confidence 455566667766665332 2355677777888877777644 346777777777777776652 1 13567777
Q ss_pred CCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEEC
Q 043978 113 LSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDL 191 (683)
Q Consensus 113 L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L 191 (683)
|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+..+++|++|++++| .+....+ .+..+++|++|++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCccCccChhHhcCC-cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEEC
Confidence 7777777777777766667777 77777777777777665666677777777777777 5554443 3456666666666
Q ss_pred CCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCccc
Q 043978 192 SLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGK 271 (683)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 271 (683)
++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .+++|+.++++.|.+.+.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGG
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCc
Confidence 6666665555556666677777777766666555556666666666666665542 234566666666666666
Q ss_pred CCccccCC
Q 043978 272 VPSWLFTL 279 (683)
Q Consensus 272 ~~~~l~~l 279 (683)
+|.+++.+
T Consensus 238 ip~~~~~~ 245 (272)
T 3rfs_A 238 VRNSAGSV 245 (272)
T ss_dssp BBCTTSCB
T ss_pred ccCccccc
Confidence 66555443
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.4e-22 Score=210.76 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=113.4
Q ss_pred CCCCEEEcCCCcCCC-CCC---hhhhhccCcccEEECCCCcccc-----cccccccCCCCccEEEcCCCccc----ccCc
Q 043978 471 SSLKYLSLSHNNLSG-TIP---PCLGNFTTQLITLHLKNNSLEG-----HIHDTFENASNIQSFDLNCNKFE----GSLP 537 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~-~~~---~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~ 537 (683)
++|++|++++|++.. .++ ..+.... +|++|++++|+++. ..+..+..+++|+.|+|++|.++ ..+|
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 678888888887762 233 2344444 88888888888873 23447778889999999999885 4567
Q ss_pred hhhhcCCCCcEEEccCCcCCcc----CCcccc--CCCCCCEEEccCCcCcc----cCCCCccccCCCCCcEEeCCCCcCC
Q 043978 538 RSLAKCVKLEVVNVGNNMINDT----FPCWLG--SLPLLKILILRSNRFYG----PLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 538 ~~l~~l~~L~~L~l~~n~l~~~----~~~~l~--~l~~L~~L~l~~n~l~~----~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
..+..+++|++|++++|.+++. ++..+. .+++|++|++++|++.. .++. .....+++|++|++++|+++
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECTTSBSC
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEccCCcCC
Confidence 7888899999999999998865 455663 38999999999999876 2331 11145789999999999999
Q ss_pred CCCc--HHHHhcchhhccccccc
Q 043978 608 DFLP--RRNFTSMEAMKNVDEQA 628 (683)
Q Consensus 608 ~~~p--~~~~~~~~~L~~l~l~~ 628 (683)
+..| ......++.++..++..
T Consensus 317 ~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 317 EEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp TTSHHHHHHHHHHHHHTCCEECC
T ss_pred cchhHHHHHHHHhhhcCcchhhh
Confidence 7765 45556667776665544
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.9e-20 Score=187.70 Aligned_cols=191 Identities=23% Similarity=0.303 Sum_probs=109.7
Q ss_pred cCCCcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccC-CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcC
Q 043978 402 KGWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLS 479 (683)
Q Consensus 402 ~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls 479 (683)
..+++|+.|++++|.++.++ +..+++|+.|++++|.+++.. +..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 45677888888888777653 235667777777777666433 33455666666666665542 245556666666666
Q ss_pred CCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCcc
Q 043978 480 HNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDT 559 (683)
Q Consensus 480 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 559 (683)
+|.+. .++. +..+. +|++|++++|++++..+ +..+++|+.|++++|++++. +. +..+++|++|++++|.+++.
T Consensus 116 ~n~l~-~~~~-l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 116 STQIT-DVTP-LAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TSCCC-CCGG-GTTCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCC-Cchh-hcCCC-CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence 66665 2332 33333 56666666666654432 55556666666666666533 22 55566666666666666543
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 560 FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 560 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
.+ +..+++|+.|++++|++.+.. .+..+++|++|++++|+++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVS----PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCG----GGTTCTTCCEEEEEEEEEE
T ss_pred hh--hcCCCCCCEEEccCCccCccc----cccCCCCCCEEEccCCeee
Confidence 32 555666666666666655432 1345566666666666665
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=7.4e-20 Score=183.37 Aligned_cols=193 Identities=22% Similarity=0.336 Sum_probs=137.5
Q ss_pred CCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCc
Q 043978 337 KLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNF 416 (683)
Q Consensus 337 ~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 416 (683)
.+++|+.|++++|.+..+ +.+..+++|+.|++++|.+..++.. ..+++|+.|++++|.
T Consensus 39 ~l~~L~~L~l~~~~i~~l------~~~~~l~~L~~L~L~~n~i~~~~~~----------------~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDLAPL----------------KNLTKITELELSGNP 96 (308)
T ss_dssp HHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGGG----------------TTCCSCCEEECCSCC
T ss_pred HcCCcCEEEeeCCCccCc------hhhhccCCCCEEEccCCcCCCChhH----------------ccCCCCCEEEccCCc
Confidence 455666666666665443 2244556666666666655554431 445555555555555
Q ss_pred ccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccC
Q 043978 417 LTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT 496 (683)
Q Consensus 417 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 496 (683)
+++.. .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+. .++. +..+.
T Consensus 97 l~~~~--------------------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~~~~-l~~l~- 151 (308)
T 1h6u_A 97 LKNVS--------------------AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT-NISP-LAGLT- 151 (308)
T ss_dssp CSCCG--------------------GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCC-CCGG-GGGCT-
T ss_pred CCCch--------------------hhcCCCCCCEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-cCcc-ccCCC-
Confidence 54432 122455666666666666643 24888999999999999998 4444 55554
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
+|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 152 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence 99999999999987644 8899999999999999986543 8899999999999999987653 8899999999999
Q ss_pred CCcCcc
Q 043978 577 SNRFYG 582 (683)
Q Consensus 577 ~n~l~~ 582 (683)
+|++.+
T Consensus 226 ~N~i~~ 231 (308)
T 1h6u_A 226 NQTITN 231 (308)
T ss_dssp EEEEEC
T ss_pred CCeeec
Confidence 999875
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=4.3e-22 Score=204.96 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=46.7
Q ss_pred CCCEEEcCCCcCCCC----CChhhhhccCcccEEECCCCccccccc----ccccCCCCccEEEcCCCcccccCc------
Q 043978 472 SLKYLSLSHNNLSGT----IPPCLGNFTTQLITLHLKNNSLEGHIH----DTFENASNIQSFDLNCNKFEGSLP------ 537 (683)
Q Consensus 472 ~L~~L~Ls~n~i~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~------ 537 (683)
+|++|++++|.+.+. ++..+....++|++|++++|++++..+ ..+..+++|+.|++++|.+.+..+
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 566666666655421 333444333356666666666654332 334555666666666666432222
Q ss_pred -hhhhcCCCCcEEEccCCcCCcc
Q 043978 538 -RSLAKCVKLEVVNVGNNMINDT 559 (683)
Q Consensus 538 -~~l~~l~~L~~L~l~~n~l~~~ 559 (683)
..+..+++|++||+++|.+.+.
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 2445555666666666666554
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=8.3e-20 Score=177.46 Aligned_cols=178 Identities=19% Similarity=0.216 Sum_probs=146.8
Q ss_pred CcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccC---CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCC
Q 043978 405 KSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHN 481 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n 481 (683)
...+.++++++.++.++....+.++.|++++|.+++.. +..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34566677777666666555566777777777776543 345678888888888888888888999999999999999
Q ss_pred cCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCC
Q 043978 482 NLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP 561 (683)
Q Consensus 482 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 561 (683)
.+. .+|...+...++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+
T Consensus 94 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 998 4554443334599999999999998888889999999999999999998777789999999999999999998888
Q ss_pred ccccCCCCCCEEEccCCcCccc
Q 043978 562 CWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 562 ~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
..|..+++|+.|++++|++...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 8899999999999999998765
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=2.6e-22 Score=208.79 Aligned_cols=233 Identities=18% Similarity=0.205 Sum_probs=169.8
Q ss_pred CCCcCcEEECCCCccccc-------CCCCCCCceEEeCCCCCCC---ccCC----------CCCCCCcEEEccCCcccC-
Q 043978 403 GWKSLIDLDLSNNFLTHI-------ALHPWKNIRTLDLRNNKIQ---GSIL----------VPPPSTEVFLVSNNKLSG- 461 (683)
Q Consensus 403 ~~~~L~~L~l~~n~~~~~-------~~~~~~~L~~L~l~~n~l~---~~~~----------~~~~~L~~L~l~~n~i~~- 461 (683)
.+++|+.|++++|.++.. .+..+++|+.|++++|.+. +..+ ..+++|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 344555555555555442 1234555666666654332 2111 356777788888887776
Q ss_pred ---CCCccccCCCCCCEEEcCCCcCCCCCChhhhhcc------------CcccEEECCCCcccc-ccc---ccccCCCCc
Q 043978 462 ---QIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFT------------TQLITLHLKNNSLEG-HIH---DTFENASNI 522 (683)
Q Consensus 462 ---~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~------------~~L~~L~l~~n~l~~-~~~---~~~~~l~~L 522 (683)
.++..+..+++|++|++++|.+.+..+..+.... ++|++|++++|+++. ..+ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 3566788999999999999998643333333321 499999999999973 333 467788999
Q ss_pred cEEEcCCCcccc-----cCchhhhcCCCCcEEEccCCcCC----ccCCccccCCCCCCEEEccCCcCccc----CCCCcc
Q 043978 523 QSFDLNCNKFEG-----SLPRSLAKCVKLEVVNVGNNMIN----DTFPCWLGSLPLLKILILRSNRFYGP----LCKSIT 589 (683)
Q Consensus 523 ~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~ 589 (683)
+.|++++|+++. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|+|++|++.+. ++....
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 999999999973 33447889999999999999996 55778889999999999999998754 221111
Q ss_pred ccCCCCCcEEeCCCCcCCC----CCcHHHHhcchhhcccccccceeeecc
Q 043978 590 TFSFQALRIIDLSRNEFKD----FLPRRNFTSMEAMKNVDEQATRLQYMG 635 (683)
Q Consensus 590 ~~~l~~L~~L~ls~n~~~~----~~p~~~~~~~~~L~~l~l~~n~~~~~~ 635 (683)
...+++|++|++++|++++ .+|...+.++++|+.+++++|++...+
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 1348999999999999996 488776788999999999999987544
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=3.6e-21 Score=193.50 Aligned_cols=195 Identities=21% Similarity=0.233 Sum_probs=89.5
Q ss_pred CcCcEEECCCCcccccCC-----CCCCCceEEeCCCCCCCccCC-------CCCCCCcEEEccCCcccCCCCccccCCCC
Q 043978 405 KSLIDLDLSNNFLTHIAL-----HPWKNIRTLDLRNNKIQGSIL-------VPPPSTEVFLVSNNKLSGQIPPYICSLSS 472 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~ 472 (683)
++|++|++++|.+++..+ ..+++|++|++++|.+++..+ ..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666665554322 234455555555555553211 12445555555555555455555555555
Q ss_pred CCEEEcCCCcCCCC--CC--hhhhhccCcccEEECCCCcccccccc---cccCCCCccEEEcCCCcccccCchhhhcC--
Q 043978 473 LKYLSLSHNNLSGT--IP--PCLGNFTTQLITLHLKNNSLEGHIHD---TFENASNIQSFDLNCNKFEGSLPRSLAKC-- 543 (683)
Q Consensus 473 L~~L~Ls~n~i~~~--~~--~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-- 543 (683)
|++|++++|++.+. ++ ..+..+ ++|++|++++|+++..... .+..+++|++|++++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKF-PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcC-CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55555555554321 11 111122 2455555555555422111 23444555555555555554444444443
Q ss_pred -CCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 544 -VKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 544 -~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++|++|++++|.++ .+|..+. ++|++|++++|++++. | .+..+++|+.|++++|+++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~---~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P---QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C---CTTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c---hhhhCCCccEEECcCCCCC
Confidence 35555555555554 2333332 4555555555555432 1 1234445555555555544
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=6.1e-21 Score=194.66 Aligned_cols=228 Identities=16% Similarity=0.209 Sum_probs=168.2
Q ss_pred CcCcEEECCCCcccccCCC--CCCCceEEeCCCCCCCcc----CCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEc
Q 043978 405 KSLIDLDLSNNFLTHIALH--PWKNIRTLDLRNNKIQGS----ILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSL 478 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n~l~~~----~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 478 (683)
+.++.+++++|.+.+.... .+++|++|++++|.+++. ....+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 5566777777766655332 456777777777776542 2346778888888888877777778888999999999
Q ss_pred CCC-cCCCC-CChhhhhccCcccEEECCCC-ccccc-ccccccCCC-CccEEEcCCC--ccc-ccCchhhhcCCCCcEEE
Q 043978 479 SHN-NLSGT-IPPCLGNFTTQLITLHLKNN-SLEGH-IHDTFENAS-NIQSFDLNCN--KFE-GSLPRSLAKCVKLEVVN 550 (683)
Q Consensus 479 s~n-~i~~~-~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~ 550 (683)
++| .+++. ++..+..+. +|++|++++| .+++. .+..+..++ +|+.|++++| .++ +..+..+..+++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 999 56532 454455554 8999999999 88764 466778888 9999999999 454 34567788899999999
Q ss_pred ccCCc-CCccCCccccCCCCCCEEEccCCc-CcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcc-hhhcccccc
Q 043978 551 VGNNM-INDTFPCWLGSLPLLKILILRSNR-FYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSM-EAMKNVDEQ 627 (683)
Q Consensus 551 l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~-~~L~~l~l~ 627 (683)
+++|. +++..+..+..+++|+.|++++|. +.... ...+..+++|++|++++| ++...+..+ ..++.++++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~ 301 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET--LLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN 301 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH--HHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe
Confidence 99998 777777788899999999999996 22110 113567899999999998 344556666 458888899
Q ss_pred cceeeecccccee
Q 043978 628 ATRLQYMGHAYYD 640 (683)
Q Consensus 628 ~n~~~~~~~~~~~ 640 (683)
.|+++.+.+..+.
T Consensus 302 ~n~l~~~~~~~~~ 314 (336)
T 2ast_B 302 CSHFTTIARPTIG 314 (336)
T ss_dssp CCCSCCTTCSSCS
T ss_pred cccCccccCCccc
Confidence 9988776655543
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=4.5e-20 Score=173.90 Aligned_cols=178 Identities=19% Similarity=0.204 Sum_probs=137.7
Q ss_pred EeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccc
Q 043978 431 LDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG 510 (683)
Q Consensus 431 L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 510 (683)
++.+++.++......++++++|++++|.+.+..+..+..+++|++|++++|++. .++...+...++|++|++++|++++
T Consensus 12 v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 12 VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCc
Confidence 344444444333334455666666666666566667888999999999999998 5555443334489999999999998
Q ss_pred cccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccc
Q 043978 511 HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITT 590 (683)
Q Consensus 511 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 590 (683)
..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------- 161 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------- 161 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---------
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---------
Confidence 87788899999999999999999777777899999999999999998777777889999999999999875
Q ss_pred cCCCCCcEEeCCCCcCCCCCcHHHHhcch
Q 043978 591 FSFQALRIIDLSRNEFKDFLPRRNFTSME 619 (683)
Q Consensus 591 ~~l~~L~~L~ls~n~~~~~~p~~~~~~~~ 619 (683)
..++.|++|+++.|+++|.+|. .++.++
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~-~~~~l~ 189 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRN-SAGSVA 189 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBC-TTSSBC
T ss_pred cCCCCHHHHHHHHHhCCceeec-cCcccc
Confidence 3456889999999999999983 444443
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=2.6e-21 Score=199.03 Aligned_cols=257 Identities=16% Similarity=0.160 Sum_probs=121.6
Q ss_pred eeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCC----ccCcCCC-CCCEEeCCCCcCcccc-CCHHHHHccC-CC
Q 043978 40 LNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVP----SEISHLS-KLTHLGLSCRVLTIEQ-RTFDLLASNL-TK 112 (683)
Q Consensus 40 L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~----~~~~~l~-~L~~L~ls~n~~~~~~-~~~~~~~~~l-~~ 112 (683)
++++.|.+++. .|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+.... ..+...+... ++
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45666665543 44444555557777777776666554 5555666 6666666666555221 1122222222 66
Q ss_pred CCEEEcCCccCCcCChhhhhc----CcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCC-CCCCC
Q 043978 113 LSLLHLGSTNLSLIKPFSLLN----LSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNW-SSPLR 187 (683)
Q Consensus 113 L~~L~L~~n~l~~~~~~~l~~----l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~L~ 187 (683)
|++|++++|.+++..+..+.. ++++|++|++++|.+++..+..+.. .+.. .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCcee
Confidence 666666666665555443322 2245666666666555433322211 0111 12344
Q ss_pred EEECCCCcCccc----cCccccCCC-CCCEEEccCCcccccCCCCC----CCC-CCCCeeeccCcccccc----CCcccc
Q 043978 188 ELDLSLSDFSGE----IPYSIGNLL-FLETVDITYCNFMGSIPTST----GNL-SKATEILFASNHLTGQ----LPHHVS 253 (683)
Q Consensus 188 ~L~L~~~~~~~~----~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~l~ 253 (683)
+|++++|.+.+. ++..+..++ +|++|++++|.+.+..+..+ ..+ ++|++|++++|.+.+. ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 444444444321 122223333 55555555555544333222 222 3555555555555442 222233
Q ss_pred C-CCCCCEEEccCCcCcccCC----ccccCCCCCcEEEccCCcccC--------cCCCCCCCCCCcEEECCCCcCcc
Q 043978 254 G-LLYLTNLDLFGNSLQGKVP----SWLFTLPSLVSVNLAWNKLTG--------PIDGFQSPNSLEEVHLEKNQIHG 317 (683)
Q Consensus 254 ~-l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~i~~--------~~~~~~~~~~L~~L~L~~n~i~~ 317 (683)
. .++|++|++++|.+++..+ ..+..+++|+.|++++|.+.. ....+..+++|++|++++|.+.+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 3 2356666666666554332 223345556666666655221 11233345555555555555543
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.5e-21 Score=199.28 Aligned_cols=222 Identities=18% Similarity=0.150 Sum_probs=120.4
Q ss_pred CCeeeCCCCCCCCCCCCcccCCC--CCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 37 LQSLNLAFNNFLGSRISPEFGRL--KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 37 L~~L~Ls~n~~~~~~~~~~~~~l--~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
++.++++++.+. +..+..+ +++++|++++|.+.+..+. +.++++|++|++++|.+. ...++..+..+++|+
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~--~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE--VSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC--HHHHHHHHTTBCCCS
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC--HHHHHHHHhhCCCCC
Confidence 566777766542 3345555 6677777777776666444 445677777777776543 112555666677777
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCC-cCCCC-CCccCCCCCCCcEEEccCCCCCccc-CC-CCCCCC-CCCEE
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGT-RIQGN-FPDQIFLLPNLRVLYLCGNIHLTGY-LP-KCNWSS-PLREL 189 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~-~~-~~~~~~-~L~~L 189 (683)
+|++++|.+++..+..++.+ ++|++|++++| .+++. ++..+..+++|++|++++|..+.+. ++ .+..++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 77777776665556666666 67777777766 45431 3344555666666666655222211 11 233444 55555
Q ss_pred ECCCC--cCc-cccCccccCCCCCCEEEccCCc-ccccCCCCCCCCCCCCeeeccCcc-ccccCCccccCCCCCCEEEcc
Q 043978 190 DLSLS--DFS-GEIPYSIGNLLFLETVDITYCN-FMGSIPTSTGNLSKATEILFASNH-LTGQLPHHVSGLLYLTNLDLF 264 (683)
Q Consensus 190 ~L~~~--~~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~ 264 (683)
++++| .++ ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|+++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 55555 232 2334444555556666665555 443444445555555555555553 211111234445555555555
Q ss_pred CC
Q 043978 265 GN 266 (683)
Q Consensus 265 ~n 266 (683)
+|
T Consensus 281 ~~ 282 (336)
T 2ast_B 281 GI 282 (336)
T ss_dssp TS
T ss_pred Cc
Confidence 55
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=2.6e-19 Score=172.63 Aligned_cols=196 Identities=18% Similarity=0.141 Sum_probs=135.4
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCCeeeccCcc-ccccCCccccCCCCCCEEEccC-CcCcccCCccccCCCCCcEEE
Q 043978 209 FLETVDITYCNFMGSIPTSTGNLSKATEILFASNH-LTGQLPHHVSGLLYLTNLDLFG-NSLQGKVPSWLFTLPSLVSVN 286 (683)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~ 286 (683)
++++|++++|++.+..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.++...+..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776666677777777777777775 6666666777777788888877 777766666777777788888
Q ss_pred ccCCcccCcCCCCCCCCCCc---EEECCCC-cCcccCCccchhccCcccccccCCCCCCC-EEeCCCCCccccccccccc
Q 043978 287 LAWNKLTGPIDGFQSPNSLE---EVHLEKN-QIHGTIPSSLFQLCGTIRFDQFSKLKNLQ-FLDLSNNNLLSFTSSGNID 361 (683)
Q Consensus 287 L~~n~i~~~~~~~~~~~~L~---~L~L~~n-~i~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~l~~~~~~~ 361 (683)
+++|+++... .+..+++|+ +|++++| .+.+ +....|..+++|+ .|++++|+++.++..
T Consensus 112 l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~------------i~~~~~~~l~~L~~~L~l~~n~l~~i~~~---- 174 (239)
T 2xwt_C 112 IFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTS------------IPVNAFQGLCNETLTLKLYNNGFTSVQGY---- 174 (239)
T ss_dssp EEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCE------------ECTTTTTTTBSSEEEEECCSCCCCEECTT----
T ss_pred CCCCCCcccc-ccccccccccccEEECCCCcchhh------------cCcccccchhcceeEEEcCCCCCcccCHh----
Confidence 8877777633 366666666 8888887 6662 2223567778888 888888887665431
Q ss_pred cccCCCCccEEEcccCC-CCCcChhhhhccccccccCCCcccCC-CcCcEEECCCCcccccCCCCCCCceEEeCCCC
Q 043978 362 IKYSLPSLLKLSFSNCN-VSEFPSFLRNSEKIHGRISKHDSKGW-KSLIDLDLSNNFLTHIALHPWKNIRTLDLRNN 436 (683)
Q Consensus 362 ~~~~~~~L~~L~l~~~~-l~~~p~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n 436 (683)
.+.. ++|+.|++++|+ ++.+|.. .+.++ ++|+.|++++|.++.++...+++|+.|+++++
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~--------------~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKD--------------AFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTT--------------TTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHH--------------HhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 2222 677888888774 6655432 22556 77778888877777776666777777777665
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=6.4e-20 Score=184.38 Aligned_cols=201 Identities=18% Similarity=0.181 Sum_probs=128.4
Q ss_pred CCccEEEcCCCcCCCCCCccC--CCCCCCcEEEccCCCCCcccCC-----CCCCCCCCCEEECCCCcCccccCccccCCC
Q 043978 136 STMTDLDLSGTRIQGNFPDQI--FLLPNLRVLYLCGNIHLTGYLP-----KCNWSSPLRELDLSLSDFSGEIPYSIGNLL 208 (683)
Q Consensus 136 ~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~ 208 (683)
++|++|++++|.+.+..|..+ ..+++|++|++++| .+.+..+ .+..+++|++|++++|.+.+..+..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 445555555555555555544 55555566666555 3333221 223456666777777777666666777777
Q ss_pred CCCEEEccCCccccc----CCCCCCCCCCCCeeeccCccccccCC--c-cccCCCCCCEEEccCCcCcccCCccccCC--
Q 043978 209 FLETVDITYCNFMGS----IPTSTGNLSKATEILFASNHLTGQLP--H-HVSGLLYLTNLDLFGNSLQGKVPSWLFTL-- 279 (683)
Q Consensus 209 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-- 279 (683)
+|++|++++|++.+. .+..++.+++|++|++++|.++.... . .++.+++|++|++++|.+.+..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 777777777776531 12334667778888888887753211 1 24667788888888888876666666655
Q ss_pred -CCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccc
Q 043978 280 -PSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLS 353 (683)
Q Consensus 280 -~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 353 (683)
++|++|++++|+++..+..+. ++|++|++++|++++. | .+..+++|+.|++++|.++.
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~-------------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-P-------------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-C-------------CTTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-c-------------hhhhCCCccEEECcCCCCCC
Confidence 688888888888876544442 6888888888888732 2 24567888888888888643
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=1.9e-19 Score=173.59 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=59.9
Q ss_pred CCCCCCEEECCC-CcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCC---eeeccCc-cccccCCccccCCC
Q 043978 182 WSSPLRELDLSL-SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKAT---EILFASN-HLTGQLPHHVSGLL 256 (683)
Q Consensus 182 ~~~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~ 256 (683)
.+++|++|++++ |.+....+..|..+++|++|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|.+++
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence 333444444443 33433333344444455555555444443 332 44444444 5555555 44444444455555
Q ss_pred CCC-EEEccCCcCcccCCccccCCCCCcEEEccCCc-ccCcCC-CCCCC-CCCcEEECCCCcCc
Q 043978 257 YLT-NLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNK-LTGPID-GFQSP-NSLEEVHLEKNQIH 316 (683)
Q Consensus 257 ~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~-~~~~~-~~L~~L~L~~n~i~ 316 (683)
+|+ +|++++|.++...+..+.. ++|+.|++++|+ ++...+ .+..+ ++|++|++++|+++
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 555 5555555554222222222 455555555553 444322 23344 55555555555554
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=163.51 Aligned_cols=163 Identities=20% Similarity=0.143 Sum_probs=118.7
Q ss_pred EEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCC
Q 043978 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN 530 (683)
Q Consensus 451 ~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 530 (683)
.+++++|.++. +|..+ .+.+++|++++|.+.+..+...+...++|+.|++++|++++..+..|.++++|+.|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 44444444442 34433 2346778888888774434333333348888888888888777778888888888888888
Q ss_pred cccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCC
Q 043978 531 KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFL 610 (683)
Q Consensus 531 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 610 (683)
++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP--GAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT--TTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH--HHhcCCCCCCEEEecCcCCcCCC
Confidence 8887777778888888888888888888778888888888888888888877655 34567888888888888888777
Q ss_pred cHHHHhcc
Q 043978 611 PRRNFTSM 618 (683)
Q Consensus 611 p~~~~~~~ 618 (683)
+-.+|..+
T Consensus 170 ~l~~l~~~ 177 (220)
T 2v70_A 170 YLAWLGEW 177 (220)
T ss_dssp GGHHHHHH
T ss_pred chHHHHHH
Confidence 75555443
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=4e-18 Score=183.09 Aligned_cols=189 Identities=22% Similarity=0.301 Sum_probs=134.6
Q ss_pred cCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCC
Q 043978 406 SLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSG 485 (683)
Q Consensus 406 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~ 485 (683)
+++.|++++|.+++++...+++|+.|++++|.++... ..+++|++|++++|.+++ +|. +.. +|+.|++++|.+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence 5666777776666655444566777777777776433 556777777777777776 555 544 88888888888874
Q ss_pred CCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCcccc
Q 043978 486 TIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLG 565 (683)
Q Consensus 486 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 565 (683)
+|. ..++|+.|++++|+++++ |. .+++|+.|++++|++++ +|. |. ++|++|++++|.|+ .+|. |.
T Consensus 135 -lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~ 199 (571)
T 3cvr_A 135 -LPE----LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VP 199 (571)
T ss_dssp -CCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC
T ss_pred -CCC----cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HH
Confidence 666 235888888888888864 33 56788899999998886 555 55 78899999999887 4555 54
Q ss_pred CCCCC-------CEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchh
Q 043978 566 SLPLL-------KILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEA 620 (683)
Q Consensus 566 ~l~~L-------~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~ 620 (683)
. +| +.|++++|+++. +| ..+..+++|+.|++++|++++.+| ..|..+..
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N~l~~-lp--~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~ 255 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCRENRITH-IP--ENILSLDPTCTIILEDNPLSSRIR-ESLSQQTA 255 (571)
T ss_dssp ----------CCEEEECCSSCCCC-CC--GGGGGSCTTEEEECCSSSCCHHHH-HHHHHHHH
T ss_pred H--hhhcccccceEEecCCCccee-cC--HHHhcCCCCCEEEeeCCcCCCcCH-HHHHHhhc
Confidence 3 66 899999998874 44 234568889999999999987766 44555544
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.9e-18 Score=161.57 Aligned_cols=142 Identities=19% Similarity=0.197 Sum_probs=83.3
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN 550 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 550 (683)
++++.|++++|.+.+..+..+..+ ++|+.|++++|++++..+..|.++++|+.|+|++|+++...+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTC-TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCC-CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 345555555555552222233333 2566666666666655566666666666666666666655555566666666666
Q ss_pred ccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHH
Q 043978 551 VGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNF 615 (683)
Q Consensus 551 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~ 615 (683)
+++|.+.+..|..|..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..+-.+|
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQNPFICDCHLKWL 173 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCEEEeCCCCcCCCCccHHH
Confidence 66666666666666666666666666666665433 2344566667777777776655444444
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4.2e-18 Score=161.35 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=100.9
Q ss_pred eEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcc
Q 043978 429 RTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSL 508 (683)
Q Consensus 429 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l 508 (683)
+.++++++.++......+++++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+. +|++|++++|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCcC
Confidence 4566666666655444556677777777777666556666677777777777777644455555544 677777777777
Q ss_pred cccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 043978 509 EGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 509 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+...+..|.++++|+.|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6666666666777777777777776666666777777777777777776666666666777777777777664
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=3.8e-18 Score=161.65 Aligned_cols=152 Identities=19% Similarity=0.223 Sum_probs=118.7
Q ss_pred EeCCCCCCCccCCCCCCCCcEEEccCCcccCCCC-ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccc
Q 043978 431 LDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509 (683)
Q Consensus 431 L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 509 (683)
+++++|.++......++.+++|++++|.+.+..+ ..|..+++|++|++++|.+.+..+..+..+. +|++|++++|+++
T Consensus 16 l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 16 VDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRLE 94 (220)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC
T ss_pred eEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCccC
Confidence 3444444433322233444555566666655533 4578899999999999999844444565554 8999999999999
Q ss_pred ccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 510 GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 510 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
+..+..|.++++|++|++++|++++..|..|..+++|++|++++|.+++..|..|..+++|+.|++++|++...
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 88888899999999999999999988889999999999999999999988888999999999999999998754
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=6.1e-18 Score=159.20 Aligned_cols=186 Identities=20% Similarity=0.225 Sum_probs=139.9
Q ss_pred cEEECCCCcccccCCCCCCCceEEeCCCCCCCccC---CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCC
Q 043978 408 IDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLS 484 (683)
Q Consensus 408 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~ 484 (683)
+.++.+++.++.++....+++++|++++|.+++.. +..+++|++|++++|++.+..+..|..+++|++|++++|.+.
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 34555555555555555556666666666665433 235677888888888888666677889999999999999998
Q ss_pred CCCChh-hhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCcc
Q 043978 485 GTIPPC-LGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW 563 (683)
Q Consensus 485 ~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 563 (683)
.+|.. +..+ ++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+.+
T Consensus 90 -~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 90 -SLPNGVFDKL-TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp -CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred -ccCHhHhcCc-cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 45544 4444 499999999999998888889999999999999999997777778999999999999997753
Q ss_pred ccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCC
Q 043978 564 LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 564 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
.+++|+.|+++.|++++.+|... +.++. ++..|...+
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~--~~l~~----~~~~C~~~~ 199 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSA--GSVAP----DSAKCSGSG 199 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTT--SSBCT----TCSBBTTTC
T ss_pred --CCCCHHHHHHHHHhCCceeeccC--ccccC----CccccccCC
Confidence 46789999999999998887433 33333 455555543
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5e-18 Score=174.26 Aligned_cols=180 Identities=20% Similarity=0.149 Sum_probs=146.1
Q ss_pred eEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCcccc-CCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCc
Q 043978 429 RTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYIC-SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNS 507 (683)
Q Consensus 429 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 507 (683)
+.++++++.++......++.++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..+..+. +|++|+|++|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCc
Confidence 5789999999876666677899999999999988777787 899999999999999844444565554 89999999999
Q ss_pred ccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccc---cCCCCCCEEEccCCcCcccC
Q 043978 508 LEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWL---GSLPLLKILILRSNRFYGPL 584 (683)
Q Consensus 508 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~~~ 584 (683)
++...+..|.++++|+.|+|++|++++..|..|..+++|++|++++|.++...+..| ..+++|+.|+|++|++....
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 998888889999999999999999998888899999999999999999987555555 56899999999999987543
Q ss_pred CCCccccCCCC--CcEEeCCCCcCCCCCc
Q 043978 585 CKSITTFSFQA--LRIIDLSRNEFKDFLP 611 (683)
Q Consensus 585 ~~~~~~~~l~~--L~~L~ls~n~~~~~~p 611 (683)
+ ..+..++. ++.|++++|++.+...
T Consensus 180 ~--~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 180 L--TDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp H--HHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred H--HHhhhccHhhcceEEecCCCccCCcC
Confidence 2 23345555 4789999999987655
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.1e-18 Score=177.07 Aligned_cols=174 Identities=22% Similarity=0.211 Sum_probs=142.7
Q ss_pred CcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCC---C-CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCc
Q 043978 407 LIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSIL---V-PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNN 482 (683)
Q Consensus 407 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~ 482 (683)
-+.++++++.++.++....+.++.|++++|.+++... . .+++|++|++++|++.+..+..|.++++|++|+|++|+
T Consensus 20 ~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 3678999999988877666778999999999886443 3 67889999999999998888889999999999999999
Q ss_pred CCCCCCh-hhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhh---hcCCCCcEEEccCCcCCc
Q 043978 483 LSGTIPP-CLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSL---AKCVKLEVVNVGNNMIND 558 (683)
Q Consensus 483 i~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~ 558 (683)
+. .++. .+..+ ++|+.|+|++|++.+..+..|.++++|+.|+|++|++++..+..| ..+++|++|++++|.++.
T Consensus 100 l~-~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 100 LH-TLDEFLFSDL-QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CC-EECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CC-cCCHHHhCCC-cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 98 4554 44444 499999999999998888899999999999999999986655555 568999999999999987
Q ss_pred cCCccccCCCC--CCEEEccCCcCcc
Q 043978 559 TFPCWLGSLPL--LKILILRSNRFYG 582 (683)
Q Consensus 559 ~~~~~l~~l~~--L~~L~l~~n~l~~ 582 (683)
..+..+..++. ++.|++++|++..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 66677777777 4889999998863
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1.4e-18 Score=177.67 Aligned_cols=217 Identities=16% Similarity=0.060 Sum_probs=153.7
Q ss_pred cEEECCCCcccccCCCCCCCceEEeCCCCCCCcc---CCCCCCCCcEEEccCCcccCCCC-ccccCCCCCCE-EEcCCCc
Q 043978 408 IDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGS---ILVPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKY-LSLSHNN 482 (683)
Q Consensus 408 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~-L~Ls~n~ 482 (683)
+.++.++++++.++..-.+++++|++++|+|+.. .+..+++|++|++++|++.+.++ .+|.+++++++ +.+++|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 5678888888887765567888899988888754 34567888888888888765443 56778887765 5556677
Q ss_pred CCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCC-CcccccCchhhhcCC-CCcEEEccCCcCCccC
Q 043978 483 LSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNC-NKFEGSLPRSLAKCV-KLEVVNVGNNMINDTF 560 (683)
Q Consensus 483 i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~ 560 (683)
+. .++...+...++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++.+.
T Consensus 92 l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 92 LL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp CC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 77 44433333334888888888888877776777777788888855 567666666677664 5888888888887544
Q ss_pred CccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhccccccc
Q 043978 561 PCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQA 628 (683)
Q Consensus 561 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~ 628 (683)
+..| ..++|+.|++++|...+.+|. ..+..+++|++||+++|+|+ .+|...|.+++.|+.++..+
T Consensus 171 ~~~f-~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 171 NSAF-NGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN 235 (350)
T ss_dssp TTSS-TTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECTTCTT
T ss_pred hhhc-cccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCCcC-ccChhhhccchHhhhccCCC
Confidence 4444 456788888876444444442 34567888888888888887 57767777777777766543
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=2.2e-17 Score=168.72 Aligned_cols=240 Identities=18% Similarity=0.190 Sum_probs=131.0
Q ss_pred CEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCC
Q 043978 114 SLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSL 193 (683)
Q Consensus 114 ~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 193 (683)
++++.+++.++.+ |..+ ++++++|++++|+++...+.+|.++++|++|++++| .+...++
T Consensus 12 ~~v~C~~~~Lt~i-P~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~--------------- 71 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIE--------------- 71 (350)
T ss_dssp TEEEEESTTCCSC-CTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEEC---------------
T ss_pred CEEEecCCCCCcc-CcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccC---------------
Confidence 4566666666655 3322 356677777777766544455666666666666666 3222211
Q ss_pred CcCccccCccccCCCCCCE-EEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccC-CcCccc
Q 043978 194 SDFSGEIPYSIGNLLFLET-VDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFG-NSLQGK 271 (683)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~ 271 (683)
+..|.+++++.+ +.+..|++....+..|..+++|++|++++|.+....+..+.....+..+++.+ +.+...
T Consensus 72 -------~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 72 -------ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp -------TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred -------hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 123444444443 33334455544455555555555555555555544444444445555666644 344433
Q ss_pred CCccccCCC-CCcEEEccCCcccCcCCCCCCCCCCcEEECCC-CcCcccCCccchhccCcccccccCCCCCCCEEeCCCC
Q 043978 272 VPSWLFTLP-SLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEK-NQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349 (683)
Q Consensus 272 ~~~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 349 (683)
.+..|..+. .++.|++++|+++...+..+...+|+++++.+ |.++ .+|. +.|..+++|+.|++++|
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~-----------~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPN-----------DVFHGASGPVILDISRT 212 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCT-----------TTTTTEECCSEEECTTS
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCH-----------HHhccCcccchhhcCCC
Confidence 344444443 46667777777666555555556677777764 3343 3333 35667777777777777
Q ss_pred CccccccccccccccCCCCccEEEcccC-CCCCcChhhhhccccccccCCCcccCCCcCcEEECCCC
Q 043978 350 NLLSFTSSGNIDIKYSLPSLLKLSFSNC-NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNN 415 (683)
Q Consensus 350 ~l~~l~~~~~~~~~~~~~~L~~L~l~~~-~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 415 (683)
+++.++.. .+.+|+.|.+.++ .++.+|.. ..+++|+.++++++
T Consensus 213 ~l~~lp~~-------~~~~L~~L~~l~~~~l~~lP~l----------------~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 213 RIHSLPSY-------GLENLKKLRARSTYNLKKLPTL----------------EKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCCSS-------SCTTCCEEECTTCTTCCCCCCT----------------TTCCSCCEEECSCH
T ss_pred CcCccChh-------hhccchHhhhccCCCcCcCCCc----------------hhCcChhhCcCCCC
Confidence 77666432 2445566655444 34454432 55566666666543
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.2e-17 Score=179.30 Aligned_cols=157 Identities=24% Similarity=0.335 Sum_probs=69.1
Q ss_pred CcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCC
Q 043978 407 LIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGT 486 (683)
Q Consensus 407 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 486 (683)
|+.|++++|.++.++ ..+++|+.|++++|.+++... ...+|++|++++|.+++ +|. .+++|+.|++++|.++ .
T Consensus 82 L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~ 154 (571)
T 3cvr_A 82 ITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-M 154 (571)
T ss_dssp CSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-C
T ss_pred CCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-c
Confidence 444444444444333 333444444444444443211 22244444444444443 222 3445555555555554 2
Q ss_pred CChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCC-------cEEEccCCcCCcc
Q 043978 487 IPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKL-------EVVNVGNNMINDT 559 (683)
Q Consensus 487 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~l~~n~l~~~ 559 (683)
+|. .+++|+.|++++|+++++ |. |. ++|+.|++++|+++ .+|. |.. +| ++|++++|.|+ .
T Consensus 155 lp~----~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~ 221 (571)
T 3cvr_A 155 LPE----LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-H 221 (571)
T ss_dssp CCC----CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-C
T ss_pred CCC----cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-e
Confidence 443 123455555555555442 22 33 45555555555554 2333 322 34 55555555554 2
Q ss_pred CCccccCCCCCCEEEccCCcCccc
Q 043978 560 FPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 560 ~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
+|..+..+++|+.|++++|++++.
T Consensus 222 lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred cCHHHhcCCCCCEEEeeCCcCCCc
Confidence 444444455555555555555443
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.3e-17 Score=165.37 Aligned_cols=194 Identities=22% Similarity=0.340 Sum_probs=136.0
Q ss_pred cCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccC-CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcC
Q 043978 406 SLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNL 483 (683)
Q Consensus 406 ~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i 483 (683)
.+..+.+..+.+++.. ...+++|+.|++++|.+.+.. ...+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3444455555555542 235678899999998887542 2356788888888888876443 77788888888888887
Q ss_pred CCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCcc
Q 043978 484 SGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW 563 (683)
Q Consensus 484 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 563 (683)
. .++. +..+. +|++|++++|++++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+.+..+
T Consensus 103 ~-~~~~-l~~l~-~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 103 K-DLSS-LKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp C-CGGG-GTTCT-TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred C-CChh-hccCC-CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence 6 3443 54444 788888888887764 4577778888888888888754 567788888888888888876544
Q ss_pred ccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHH
Q 043978 564 LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNF 615 (683)
Q Consensus 564 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~ 615 (683)
+..+++|+.|++++|++.+. + .+..+++|+.|++++|++.+ .|...+
T Consensus 174 l~~l~~L~~L~L~~N~i~~l-~---~l~~l~~L~~L~l~~n~i~~-~~~~~~ 220 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDL-R---ALAGLKNLDVLELFSQECLN-KPINHQ 220 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBC-G---GGTTCTTCSEEEEEEEEEEC-CCEECC
T ss_pred hcCCCccCEEECCCCcCCCC-h---hhccCCCCCEEECcCCcccC-Cccccc
Confidence 77788888888888887653 1 35677788888888888764 443333
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2e-17 Score=157.86 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=78.5
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN 550 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 550 (683)
++|++|++++|.+.+..|..+..+. +|+.|++++|++....+..|..+++|+.|++++|++++..+..|..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 4455555555555433333333332 555555555555544445555666666666666666655555566666666666
Q ss_pred ccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 551 VGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 551 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+++|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|+.|++++|++.+..+
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCCccCCcc
Confidence 6666665 455556666666666666666654332 234556667777777777765544
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.3e-17 Score=161.70 Aligned_cols=170 Identities=29% Similarity=0.348 Sum_probs=117.4
Q ss_pred CCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccCC
Q 043978 365 SLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSIL 443 (683)
Q Consensus 365 ~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~~ 443 (683)
.+++|+.|++++|.+..++.. ..+++|+.|++++|.++++. +..+++|+.|++++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~----------------~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~------ 101 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGI----------------QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK------ 101 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTG----------------GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC------
T ss_pred hcCcccEEEccCCCcccChhH----------------hcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCc------
Confidence 345555555555555544332 44555666666666555443 2234444444444444
Q ss_pred CCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCcc
Q 043978 444 VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQ 523 (683)
Q Consensus 444 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 523 (683)
+.+ + ..+..+++|++|++++|.+.+ + ..+..+. +|+.|++++|++++. ..+..+++|+
T Consensus 102 ---------------l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 102 ---------------VKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp ---------------CCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred ---------------CCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCC
Confidence 332 1 347778888888888888873 4 3455554 889999999988865 5688889999
Q ss_pred EEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcc
Q 043978 524 SFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 524 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
.|++++|++++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|++..
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 99999999986544 88899999999999999864 3 48889999999999998864
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=3.7e-17 Score=156.01 Aligned_cols=153 Identities=23% Similarity=0.288 Sum_probs=115.3
Q ss_pred ceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCc
Q 043978 428 IRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNS 507 (683)
Q Consensus 428 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 507 (683)
.+.++++++.++......+++|++|++++|.+.+..+..|..+++|++|++++|.+. .+|...+...++|+.|++++|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCc
Confidence 456777777777666666678888888888888777777888888888888888886 5554443333478888888888
Q ss_pred ccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcc
Q 043978 508 LEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 508 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
+++..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|.+....+..|..+++|+.|++++|++..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 87777777778888888888888887 567777788888888888888876666667778888888888887754
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2.9e-17 Score=160.21 Aligned_cols=126 Identities=25% Similarity=0.302 Sum_probs=95.7
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 525 (683)
+++|++|++++|.+.+.. . +..+++|++|++++|++. .+|.... ++|+.|++++|++++. ..+..+++|+.|
T Consensus 62 l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L 133 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEIL 133 (263)
T ss_dssp CTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEE
Confidence 344444455555555333 2 778888999999999887 4554322 4899999999988865 358888999999
Q ss_pred EcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 526 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
++++|++++. + .+..+++|++|++++|.+.+. ..+..+++|+.|++++|++...
T Consensus 134 ~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 134 SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999998854 3 688899999999999999876 5688889999999999988754
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3e-17 Score=152.87 Aligned_cols=150 Identities=14% Similarity=0.170 Sum_probs=94.6
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEE
Q 043978 447 PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFD 526 (683)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 526 (683)
+++++|++++|.+. .+| .+..+++|++|++++|.+. .+ ..+..+. +|++|++++|++++..+..|..+++|+.|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34444444444444 333 4666777777777777654 22 3444443 777777777777766666677777777777
Q ss_pred cCCCcccccCchhhhcCCCCcEEEccCCc-CCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCc
Q 043978 527 LNCNKFEGSLPRSLAKCVKLEVVNVGNNM-INDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNE 605 (683)
Q Consensus 527 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 605 (683)
+++|++++..|..+..+++|++|++++|. +.+ +| .+..+++|++|++++|++.+.. .+..+++|++|++++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcc
Confidence 77777776666677777777777777776 543 33 4667777777777777765421 34566777777777777
Q ss_pred CC
Q 043978 606 FK 607 (683)
Q Consensus 606 ~~ 607 (683)
|.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 64
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=7.5e-18 Score=183.20 Aligned_cols=170 Identities=25% Similarity=0.310 Sum_probs=115.8
Q ss_pred cCCCcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccC-CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcC
Q 043978 402 KGWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLS 479 (683)
Q Consensus 402 ~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls 479 (683)
..++.|+.|++++|.+..++ +..+++|+.|++++|.+++.. +..+++|+.|++++|.+.+. ..+..+++|+.|+|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLE 117 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECT
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEec
Confidence 45677888888888877663 346677888888888776543 33567777777777777642 256677777777777
Q ss_pred CCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCcc
Q 043978 480 HNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDT 559 (683)
Q Consensus 480 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 559 (683)
+|.+.+ ++ .+..+. +|+.|+|++|++++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+.+.
T Consensus 118 ~N~l~~-l~-~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 118 HNGISD-IN-GLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TSCCCC-CG-GGGGCT-TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCC-Cc-cccCCC-ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 777763 32 344443 777777777777654 456677777777777777765444 67777777777777777653
Q ss_pred CCccccCCCCCCEEEccCCcCcc
Q 043978 560 FPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 560 ~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
..+..+++|+.|+|++|++.+
T Consensus 191 --~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 191 --RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GGGTTCTTCSEEECCSEEEEC
T ss_pred --hHHccCCCCCEEEccCCcCcC
Confidence 346677777777777777654
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2.7e-17 Score=153.11 Aligned_cols=154 Identities=12% Similarity=0.227 Sum_probs=132.9
Q ss_pred ccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCC
Q 043978 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKL 546 (683)
Q Consensus 467 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 546 (683)
...+++|+.|++++|.+. .+| .+..+. +|++|++++|.+... ..+..+++|+.|++++|++++..+..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAH-NIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCT-TCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCC-CCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 366789999999999998 677 566665 999999999977643 478899999999999999998788889999999
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEccCCc-CcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccc
Q 043978 547 EVVNVGNNMINDTFPCWLGSLPLLKILILRSNR-FYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625 (683)
Q Consensus 547 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~ 625 (683)
++|++++|.+++..+..+..+++|++|++++|+ +. .++ .+..+++|++|++++|++++ ++ .+..+++|+.++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~---~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM---PLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLY 187 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG---GGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEE
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH---hhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEE
Confidence 999999999998888899999999999999998 54 333 46789999999999999986 44 588999999999
Q ss_pred cccceee
Q 043978 626 EQATRLQ 632 (683)
Q Consensus 626 l~~n~~~ 632 (683)
+++|++.
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 9999863
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=4.6e-17 Score=158.76 Aligned_cols=175 Identities=22% Similarity=0.295 Sum_probs=136.6
Q ss_pred CCCceEEeCCCCCCCccC-CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEEC
Q 043978 425 WKNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHL 503 (683)
Q Consensus 425 ~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l 503 (683)
+.++..++++++.+++.. ...+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++. +..+. +|+.|++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~-~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLT-KLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCS-SCCEEEC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCC-CCCEEEC
Confidence 456777888888887654 3367889999999999885 34 6888999999999999998 4555 55554 8999999
Q ss_pred CCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 504 KNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 504 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
++|++++..+ +.. ++|+.|++++|++++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|++.+.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 9999887533 233 8899999999999853 3588899999999999999865 3 588899999999999998765
Q ss_pred CCCCccccCCCCCcEEeCCCCcCCCCCcHHHHh
Q 043978 584 LCKSITTFSFQALRIIDLSRNEFKDFLPRRNFT 616 (683)
Q Consensus 584 ~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~ 616 (683)
..+..+++|+.|++++|++.+. |...+.
T Consensus 166 ----~~l~~l~~L~~L~l~~N~~~~~-~~~~~~ 193 (263)
T 1xeu_A 166 ----GGLTRLKKVNWIDLTGQKCVNE-PVKYQP 193 (263)
T ss_dssp ----TTSTTCCCCCEEEEEEEEEECC-CEECCS
T ss_pred ----HHhccCCCCCEEeCCCCcccCC-cccccc
Confidence 3456788999999999998854 544443
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.8e-16 Score=146.64 Aligned_cols=138 Identities=20% Similarity=0.234 Sum_probs=110.8
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccc-cccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHD-TFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
+.+++++|.+. .+|..+. .+|++|++++|++++..+. .|..+++|+.|++++|++++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67888888886 6776543 3788888888888877654 57888888888888888888878888888888999999
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhc
Q 043978 553 NNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTS 617 (683)
Q Consensus 553 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~ 617 (683)
+|.+++..+..|..+++|++|++++|++++..+ ..+..+++|++|++++|++.+.++..+|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~ 149 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECT--TSSTTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH--HHhhcCCCCCEEEeCCCCccCcCcchHHHH
Confidence 888888888788888889999999998887665 345678888999999999988777555543
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=3.2e-16 Score=170.42 Aligned_cols=172 Identities=20% Similarity=0.210 Sum_probs=100.9
Q ss_pred ccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccC
Q 043978 31 LFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNL 110 (683)
Q Consensus 31 l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l 110 (683)
+..+++|+.|++++|.+... + .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+... + .+..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l----~-~l~~l 108 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL----S-SLKDL 108 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC----T-TSTTC
T ss_pred hhcCCCCCEEECcCCCCCCC--h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC----h-hhccC
Confidence 45666777777777666432 2 46667777777777777666543 66677777777777665521 1 24566
Q ss_pred CCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEE
Q 043978 111 TKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELD 190 (683)
Q Consensus 111 ~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 190 (683)
++|++|++++|.+... ..+..+ ++|+.|++++|.+.+. ..+..+++|+.|++++| .+.+..+ +..+++|+.|+
T Consensus 109 ~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~ 181 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLY 181 (605)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred CCCCEEEecCCCCCCC--ccccCC-CccCEEECCCCccCCc--hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEE
Confidence 6666666666666654 345555 6666666666666643 44556666666666665 4443333 44555555555
Q ss_pred CCCCcCccccCccccCCCCCCEEEccCCccc
Q 043978 191 LSLSDFSGEIPYSIGNLLFLETVDITYCNFM 221 (683)
Q Consensus 191 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 221 (683)
|++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 182 Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 182 LSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 555555432 23455555555555555554
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=4.6e-16 Score=157.51 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=50.3
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCc-EEEccCCcCCccCCccccCCCCCCEEEc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLE-VVNVGNNMINDTFPCWLGSLPLLKILIL 575 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l 575 (683)
+|+.+++++|+++.+...+|.++++|+.+++.+| ++.+.+.+|.+|++|+ .+++.+ .++.+.+..|.++++|+.+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 5555555555555555555555555555555554 4444445555555555 555555 444444445555555555555
Q ss_pred cCCcCcccCCCCccccCCCCCcEEe
Q 043978 576 RSNRFYGPLCKSITTFSFQALRIID 600 (683)
Q Consensus 576 ~~n~l~~~~~~~~~~~~l~~L~~L~ 600 (683)
++|.+....+ ..+..+++|+.++
T Consensus 305 ~~n~i~~I~~--~aF~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGD--ELFGNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECT--TTTCTTCCCCEEE
T ss_pred CCCccCccch--hhhcCCcchhhhc
Confidence 5555443322 2334455555443
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=139.12 Aligned_cols=138 Identities=16% Similarity=0.151 Sum_probs=98.1
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccC
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN 553 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 553 (683)
+.+++++|.+. .+|..+. ++|++|++++|+++. +|..|.++++|+.|++++|++++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46777777776 6665442 367777777777763 446777777788888888877777667777778888888888
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 554 NMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 554 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
|.++...+..|..+++|++|++++|++....+ ..+..+++|+.|++++|++.+..+-.+|..+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~ 150 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGANPLYCDCNMQWLSDW 150 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeCh--hhhhcCccccEEEeCCCCeecCCcCHHHHHH
Confidence 88777777777777888888888887775433 2345677888888888888766665555444
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=2.2e-15 Score=139.27 Aligned_cols=129 Identities=29% Similarity=0.325 Sum_probs=84.8
Q ss_pred EEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChh-hhhccCcccEEECCCCcccccccccccCCCCccEEEcCC
Q 043978 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPC-LGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNC 529 (683)
Q Consensus 451 ~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 529 (683)
.++++++.+. .+|..+. .++++|++++|.+.+..+.. +..+ ++|++|++++|++++..+..|.++++|+.|++++
T Consensus 12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccC-CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3444444443 3343332 26777777777776333322 3333 3777777777777776677777777777777777
Q ss_pred CcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 530 NKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 530 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777776666677777777777777777777777777777777777777777644
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=2.1e-18 Score=186.41 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=46.1
Q ss_pred CCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 473 LKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 473 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
|+.|++++|.++ .+|. +..+. +|+.|++++|+++ .+|..|.++++|+.|+|++|++++ +| .+..+++|++|+++
T Consensus 443 L~~L~Ls~n~l~-~lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH-LEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCS-SCCC-GGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCC-CCcC-ccccc-cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 444444444444 2333 33322 4444444444444 233344444444444444444443 23 44444444444444
Q ss_pred CCcCCccC-CccccCCCCCCEEEccCCcCcc
Q 043978 553 NNMINDTF-PCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 553 ~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
+|.+++.. |..++.+++|+.|++++|++.+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 44444433 4444444444444444444443
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=6.8e-15 Score=134.29 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=113.4
Q ss_pred CCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 473 LKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 473 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
.+.++++++.+. .+|..+. ++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 567888888887 6775543 489999999999998888888999999999999999997777778999999999999
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 553 NNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 553 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|.+++..+..|..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCH--HHhcCCcccCEEEecCCCeeccCc
Confidence 999998777778899999999999999985543 334678999999999999998766
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2e-15 Score=136.55 Aligned_cols=134 Identities=21% Similarity=0.149 Sum_probs=90.6
Q ss_pred CCCCEEEcCCCcCC-CCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEE
Q 043978 471 SSLKYLSLSHNNLS-GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVV 549 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 549 (683)
++|++|++++|.+. +.+|..+..+. +|+.|++++|.+++. ..|..+++|+.|++++|++++..|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56777777777765 45665555444 777777777777655 567777777777777777776667777777777777
Q ss_pred EccCCcCCccC-CccccCCCCCCEEEccCCcCcccCCC-CccccCCCCCcEEeCCCCcCC
Q 043978 550 NVGNNMINDTF-PCWLGSLPLLKILILRSNRFYGPLCK-SITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 550 ~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++++|.+++.. +..+..+++|+.|++++|++.+..+. ...+..+++|++|++++|++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777776542 25667777777777777777644220 013456677777777777776
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=9.7e-16 Score=155.13 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=50.5
Q ss_pred CCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCC-EEEccCCcCcccCCCCccccCCCCCc
Q 043978 519 ASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLK-ILILRSNRFYGPLCKSITTFSFQALR 597 (683)
Q Consensus 519 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~l~~L~ 597 (683)
+++|+.+++++|+++.+.+.+|.+|++|+++++.+| +..+.+.+|.++++|+ .+++.+ .+.... ...+..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~--~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE--FGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC--TTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc--hhhhhCCccCC
Confidence 455555555555555444455555555555555554 4444444555555555 555554 333221 13344455555
Q ss_pred EEeCCCCcCCCCCcHHHHhcchhhccc
Q 043978 598 IIDLSRNEFKDFLPRRNFTSMEAMKNV 624 (683)
Q Consensus 598 ~L~ls~n~~~~~~p~~~~~~~~~L~~l 624 (683)
.+++++|.++ .++..+|.++++|+.+
T Consensus 301 ~l~l~~n~i~-~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 301 YVLATGDKIT-TLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEEECSSCCC-EECTTTTCTTCCCCEE
T ss_pred EEEeCCCccC-ccchhhhcCCcchhhh
Confidence 5555555554 3444455555555444
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=9.1e-15 Score=135.06 Aligned_cols=127 Identities=24% Similarity=0.338 Sum_probs=101.2
Q ss_pred EEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCC
Q 043978 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN 530 (683)
Q Consensus 451 ~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 530 (683)
.++++++.+. .+|..+ .++|++|++++|.+. .+|..+..+. +|+.|++++|++++..+..|.++++|+.|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4555555555 344433 257888888888887 7777776665 8888999888888888888888999999999999
Q ss_pred cccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcc
Q 043978 531 KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 531 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9988888888889999999999999987666678888999999999998753
No 126
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=1.5e-13 Score=142.80 Aligned_cols=327 Identities=15% Similarity=0.136 Sum_probs=163.9
Q ss_pred CCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCC
Q 043978 180 CNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLT 259 (683)
Q Consensus 180 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 259 (683)
+.++.+|+.+.+..+ +......+|.+|++|+.+++..+ +......+|..+..|+.+.+..+ +......+|.++..++
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 334444444444321 33233344555555555555432 33333445555555555544432 2223333444443222
Q ss_pred EEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCC
Q 043978 260 NLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLK 339 (683)
Q Consensus 260 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 339 (683)
..+... .......+|..+++|+.+.+..+...-....|..+.+|+.+.+..+ +. .+...+|.++.
T Consensus 144 -~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~------------~I~~~~F~~~~ 208 (394)
T 4fs7_A 144 -ITIPEG-VTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LK------------IIRDYCFAECI 208 (394)
T ss_dssp -EECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CC------------EECTTTTTTCT
T ss_pred -cccCcc-ccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ce------------EeCchhhcccc
Confidence 222111 1113334455566666666654432222333445566666655544 22 22333566666
Q ss_pred CCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccc
Q 043978 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTH 419 (683)
Q Consensus 340 ~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 419 (683)
.|+.+.+..+... +. +.......|+.+.+... +. .+....+.++..++.+.+..+...
T Consensus 209 ~L~~i~~~~~~~~-i~-----~~~~~~~~l~~i~ip~~-~~--------------~i~~~~f~~~~~l~~~~~~~~~~~- 266 (394)
T 4fs7_A 209 LLENMEFPNSLYY-LG-----DFALSKTGVKNIIIPDS-FT--------------ELGKSVFYGCTDLESISIQNNKLR- 266 (394)
T ss_dssp TCCBCCCCTTCCE-EC-----TTTTTTCCCCEEEECTT-CC--------------EECSSTTTTCSSCCEEEECCTTCE-
T ss_pred ccceeecCCCceE-ee-----hhhcccCCCceEEECCC-ce--------------ecccccccccccceeEEcCCCcce-
Confidence 6666665554311 10 11223344555544322 11 122223344555555555443211
Q ss_pred cCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCccc
Q 043978 420 IALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLI 499 (683)
Q Consensus 420 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 499 (683)
+....+..+..++.+......+. ...|..+.+|+.+.+..+ +. .++...+..+.+|+
T Consensus 267 ------------------i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 267 ------------------IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLV 323 (394)
T ss_dssp ------------------ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCC
T ss_pred ------------------eeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCC
Confidence 12233334444444444433322 245666777777777654 43 44444444444778
Q ss_pred EEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEE
Q 043978 500 TLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKIL 573 (683)
Q Consensus 500 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 573 (683)
.+++..+ ++.+...+|.+|++|+.+++..+ ++.+...+|.+|++|+.+++..+ +. .....|.++++|+.+
T Consensus 324 ~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 324 SIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 7777643 66666778888888888888776 66677788888888888888765 22 234567777777764
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.6e-15 Score=137.12 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=95.5
Q ss_pred CCCCcEEEccCCccc-CCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccE
Q 043978 446 PPSTEVFLVSNNKLS-GQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 524 (683)
++++++|++++|.+. +.+|..+..+++|++|++++|.+.+ + ..+..+. +|++|++++|++++..+..+..+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 355566666666655 4556667777788888888888763 3 4444443 7888888888887766677777788888
Q ss_pred EEcCCCcccccCc-hhhhcCCCCcEEEccCCcCCccCC---ccccCCCCCCEEEccCCcCcc
Q 043978 525 FDLNCNKFEGSLP-RSLAKCVKLEVVNVGNNMINDTFP---CWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 525 L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~~ 582 (683)
|++++|++++..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888888875422 677788888888888888876544 367788888888888887753
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.1e-15 Score=133.38 Aligned_cols=129 Identities=22% Similarity=0.188 Sum_probs=72.0
Q ss_pred CCCCEEEcCCCcCC-CCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEE
Q 043978 471 SSLKYLSLSHNNLS-GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVV 549 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 549 (683)
++|+.|++++|.+. +.+|..+..+. +|+.|++++|++++. ..+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34555555555554 34444333333 555555555555544 455566666666666666665456656666666666
Q ss_pred EccCCcCCcc-CCccccCCCCCCEEEccCCcCcccCCC-CccccCCCCCcEEeCC
Q 043978 550 NVGNNMINDT-FPCWLGSLPLLKILILRSNRFYGPLCK-SITTFSFQALRIIDLS 602 (683)
Q Consensus 550 ~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~ls 602 (683)
++++|.+++. .+..+..+++|++|++++|++.+..+. ...+..+++|++||++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666543 235566666666666666666543220 0124456666666665
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=3.9e-16 Score=174.19 Aligned_cols=115 Identities=22% Similarity=0.286 Sum_probs=63.0
Q ss_pred CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccE
Q 043978 445 PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524 (683)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 524 (683)
.++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+. +|++|+|++|+|+ .+|..|..+++|+.
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS-NLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT-TCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCC-CCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 3455555555555555 34444445555556666655555 5555554443 5556666655555 33555555555666
Q ss_pred EEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccc
Q 043978 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWL 564 (683)
Q Consensus 525 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 564 (683)
|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+
T Consensus 298 L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 298 FYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 666555554 344445555556666666665555555444
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=2.5e-17 Score=177.98 Aligned_cols=189 Identities=22% Similarity=0.226 Sum_probs=96.2
Q ss_pred cCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCcc-------------CCcCChhhhhcCcCCccEEE-cCCC
Q 043978 81 SHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTN-------------LSLIKPFSLLNLSSTMTDLD-LSGT 146 (683)
Q Consensus 81 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~~L~~L~-l~~n 146 (683)
..+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+ ++|+.|+ ++.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~----~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST----VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHHHH----HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCGGGHH
T ss_pred ccCccceeccCChhhHH----hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcchhhc
Confidence 44566666666666554 456666666666666665543 223334444444 4555554 3333
Q ss_pred cCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCC
Q 043978 147 RIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPT 226 (683)
Q Consensus 147 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 226 (683)
.+. .|+.+.+++| .+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|.
T Consensus 421 ~~~-----------~L~~l~l~~n-~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~ 480 (567)
T 1dce_A 421 YLD-----------DLRSKFLLEN-SVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP 480 (567)
T ss_dssp HHH-----------HHHHHHHHHH-HHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG
T ss_pred ccc-----------hhhhhhhhcc-cccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch
Confidence 211 1222222222 1111100 125555555555553 343 555566666666666555 4455
Q ss_pred CCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccC-CccccCCCCCcEEEccCCcccCcC
Q 043978 227 STGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKV-PSWLFTLPSLVSVNLAWNKLTGPI 296 (683)
Q Consensus 227 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~~ 296 (683)
.++.+++|+.|++++|.+++ +| .++.+++|++|++++|.+++.. |..+..+++|+.|++++|.+++.+
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 55555566666666655554 33 4555566666666666555443 555555555555555555555433
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=2.3e-13 Score=141.35 Aligned_cols=310 Identities=14% Similarity=0.047 Sum_probs=157.9
Q ss_pred CccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCC
Q 043978 201 PYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLP 280 (683)
Q Consensus 201 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 280 (683)
..+|.+|.+|+.+.+.. .++.....+|.++++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|..+.
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 34566666666666653 244444555666666666666543 33344445555555555544433 2223333333332
Q ss_pred CCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccccccccc
Q 043978 281 SLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNI 360 (683)
Q Consensus 281 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~ 360 (683)
.+......... .+...+|.++++|+.+.+.++. ..+..
T Consensus 141 ~~~~~~~~~~~-------------------------------------~i~~~aF~~c~~L~~i~l~~~~-~~I~~---- 178 (394)
T 4fs7_A 141 FKEITIPEGVT-------------------------------------VIGDEAFATCESLEYVSLPDSM-ETLHN---- 178 (394)
T ss_dssp CSEEECCTTCC-------------------------------------EECTTTTTTCTTCCEEECCTTC-CEECT----
T ss_pred ccccccCcccc-------------------------------------ccchhhhcccCCCcEEecCCcc-ceecc----
Confidence 22211111111 1122244555555555554332 11211
Q ss_pred ccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccc-cCCCCCCCceEEeCCCC--C
Q 043978 361 DIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTH-IALHPWKNIRTLDLRNN--K 437 (683)
Q Consensus 361 ~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n--~ 437 (683)
..+..+++|+.+.+..+ ++. +....|.++..|+.+.+..+...- .......+|+.+.+... .
T Consensus 179 ~~F~~c~~L~~i~l~~~-~~~--------------I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~ 243 (394)
T 4fs7_A 179 GLFSGCGKLKSIKLPRN-LKI--------------IRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTE 243 (394)
T ss_dssp TTTTTCTTCCBCCCCTT-CCE--------------ECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCE
T ss_pred ccccCCCCceEEEcCCC-ceE--------------eCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCcee
Confidence 22334455555544332 211 222333555556655555442211 11123345666655443 2
Q ss_pred CCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccccccccc
Q 043978 438 IQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFE 517 (683)
Q Consensus 438 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 517 (683)
+....+..+..++.+.+..+... .....|..+..++......+.+ +...+....+|+.+.+..+ ++.+...+|.
T Consensus 244 i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i----~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~ 317 (394)
T 4fs7_A 244 LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV----PEKTFYGCSSLTEVKLLDS-VKFIGEEAFE 317 (394)
T ss_dssp ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE----CTTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred cccccccccccceeEEcCCCcce-eeccccccccccceeccCceee----ccccccccccccccccccc-cceechhhhc
Confidence 33344556666666666655333 4455677777777776665433 2222333347777777554 5555666777
Q ss_pred CCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCC
Q 043978 518 NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSN 578 (683)
Q Consensus 518 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 578 (683)
++++|+.+++.++ ++.+...+|.+|++|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus 318 ~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 7777777777644 55566667777777777777655 55555566777777777776544
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=4.5e-16 Score=173.71 Aligned_cols=186 Identities=24% Similarity=0.223 Sum_probs=110.9
Q ss_pred CcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCC
Q 043978 405 KSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLS 484 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~ 484 (683)
+.++.|++.+|.+..... ..++.++++.+.+. .+++..|.+. ..+..+..++.|+.|+|++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~---~~l~~l~Ls~~~i~-----------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~ 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ---ALLQHKKLSQYSID-----------EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF 237 (727)
T ss_dssp ----------------------------------------------------------------CCCCCCEEECTTSCCS
T ss_pred CccceEEeeCCCCCcchh---hHhhcCccCccccc-----------Ccccccccee-cChhhhccCCCCcEEECCCCCCC
Confidence 456777777776665322 33455666666554 2344445555 56778899999999999999998
Q ss_pred CCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccc
Q 043978 485 GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWL 564 (683)
Q Consensus 485 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 564 (683)
.+|..++.+. +|++|+|++|.++ .+|..|..+++|+.|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|
T Consensus 238 -~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~ 312 (727)
T 4b8c_D 238 -NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF 312 (727)
T ss_dssp -CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST
T ss_pred -CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh
Confidence 8888888766 9999999999998 66788999999999999999998 67889999999999999999997 678789
Q ss_pred cCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 565 GSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 565 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+.+++|++|+|++|++++.+|....... ..+..+++++|.+++.+|
T Consensus 313 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~-~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEKQFLKILTEKS-VTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TSCTTCCCEECTTSCCCSHHHHHHHHHH-HHHHHHHHHHCCCCCCCC
T ss_pred hcCCCccEEeCCCCccCCCChHHHhhcc-hhhhHHhhccCcccCcCc
Confidence 9999999999999999876653221111 111234555555555554
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=3.6e-15 Score=131.83 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=112.7
Q ss_pred CcccEEECCCCccc-ccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEE
Q 043978 496 TQLITLHLKNNSLE-GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILI 574 (683)
Q Consensus 496 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 574 (683)
++|+.|++++|.++ +..+..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 58999999999998 67778889999999999999999866 7799999999999999999987888888899999999
Q ss_pred ccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc--HHHHhcchhhccccccc
Q 043978 575 LRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP--RRNFTSMEAMKNVDEQA 628 (683)
Q Consensus 575 l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p--~~~~~~~~~L~~l~l~~ 628 (683)
+++|++.+.. ....+..+++|++|++++|++++..+ ...|..+++|+.+++++
T Consensus 95 ls~N~i~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLS-TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHH-HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChH-HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999997632 11356789999999999999986433 26899999999999863
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=5.9e-13 Score=137.38 Aligned_cols=266 Identities=12% Similarity=0.078 Sum_probs=135.8
Q ss_pred CCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCcc
Q 043978 60 KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMT 139 (683)
Q Consensus 60 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~ 139 (683)
..++.+.+.. .++.+...+|.++ +|+.+.+..+-..+....| .++ +|+.+.+.. .+..+...+|..+ ++|+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~i~~I~~~aF----~~~-~L~~i~lp~-~l~~I~~~aF~~c-~~L~ 183 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEGLKSIGDMAF----FNS-TVQEIVFPS-TLEQLKEDIFYYC-YNLK 183 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTTCCEECTTTT----TTC-CCCEEECCT-TCCEECSSTTTTC-TTCC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCCccEECHHhc----CCC-CceEEEeCC-CccEehHHHhhCc-ccCC
Confidence 3444444432 2333444444443 3555554444222222222 222 355555543 3444444455555 5555
Q ss_pred EEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCc
Q 043978 140 DLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCN 219 (683)
Q Consensus 140 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 219 (683)
.+++++|++.......+. +.+|+.+.+..+ ...-....+..+++|+.+++..+ +......+|.+ .+|+.+.+. +.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 555555555433223333 355555555432 11111114555555555555543 23233334444 456666663 23
Q ss_pred ccccCCCCCCCCCCCCeeeccCcccc-----ccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccC
Q 043978 220 FMGSIPTSTGNLSKATEILFASNHLT-----GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG 294 (683)
Q Consensus 220 ~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 294 (683)
+......+|..+++|+.+.+.++.+. .....+|.++++|+.+++.+ .+......+|..+.+|+.+.+..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 44444556666666666666655443 34556677777777777763 355555666777777777777554 333
Q ss_pred -cCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCC-CCCEEeCCCCCcccc
Q 043978 295 -PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLK-NLQFLDLSNNNLLSF 354 (683)
Q Consensus 295 -~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l 354 (683)
....|.++ +|+.+++.+|.+. .+....|..++ .++.|.+..+.+...
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~------------~l~~~~F~~~~~~l~~l~vp~~~~~~y 385 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPP------------QVFEKVWYGFPDDITVIRVPAESVEKY 385 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCC------------BCCCSSCCCSCTTCCEEEECGGGHHHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCc------------ccccccccCCCCCccEEEeCHHHHHHh
Confidence 23345566 7777777777655 22333566663 678888887765544
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4.8e-14 Score=128.61 Aligned_cols=110 Identities=22% Similarity=0.302 Sum_probs=59.4
Q ss_pred CCCCEEEcCCCcCCCCCChh-hhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPC-LGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVV 549 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 549 (683)
++|++|++++|.+. .++.. +..+ ++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQ-SLPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCccc-EeCHHHhcCc-ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 34555555555554 22222 2222 255555555555555444555555666666666666655544555566666666
Q ss_pred EccCCcCCccCCccccCCCCCCEEEccCCcCcc
Q 043978 550 NVGNNMINDTFPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 550 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
++++|.+++..+..+..+++|++|++++|++.+
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 666666655444445556666666666666543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=2.1e-14 Score=130.84 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=102.2
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCC
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 544 (683)
..+..+++|+.|++++|.+. .+|. +....++|+.|++++|.+++. ..|..+++|+.|++++|++++..+..|..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 34567788999999999887 5553 555555899999999988875 6788888899999999998876666668888
Q ss_pred CCcEEEccCCcCCccCCc--cccCCCCCCEEEccCCcCcccCCCC--ccccCCCCCcEEeCCCCcCC
Q 043978 545 KLEVVNVGNNMINDTFPC--WLGSLPLLKILILRSNRFYGPLCKS--ITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 545 ~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~ls~n~~~ 607 (683)
+|++|++++|.+.+ +|. .+..+++|+.|++++|++... +.. ..+..+++|+.||+++|.+.
T Consensus 89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 89999999998864 444 677888888888888887643 210 02456677777777777664
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=1.5e-12 Score=134.31 Aligned_cols=267 Identities=14% Similarity=0.159 Sum_probs=189.9
Q ss_pred cCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCC
Q 043978 81 SHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLP 160 (683)
Q Consensus 81 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~ 160 (683)
..+..++.+.+..+--.+....| .++ +|+.+.+..+ +..+...+|.+. +|+.+.+.. .+......+|..++
T Consensus 110 ~~~~~l~~i~ip~~i~~I~~~aF----~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~ 180 (401)
T 4fdw_A 110 EILKGYNEIILPNSVKSIPKDAF----RNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCY 180 (401)
T ss_dssp EECSSCSEEECCTTCCEECTTTT----TTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCT
T ss_pred EecCCccEEEECCccCEehHhhc----ccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcc
Confidence 34577888888776444444443 454 6888888765 777777788774 588888876 56656667888888
Q ss_pred CCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeecc
Q 043978 161 NLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240 (683)
Q Consensus 161 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 240 (683)
+|+.+++..| .+.........+.+|+.+.+..+ +......+|.++++|+.+++..+ +......+|.. .+|+.+.+.
T Consensus 181 ~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 181 NLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp TCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE
T ss_pred cCCeeecCCC-cceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC
Confidence 9999998877 55554443333678888888754 55556678888889999988764 55555667777 788888884
Q ss_pred CccccccCCccccCCCCCCEEEccCCcCc-----ccCCccccCCCCCcEEEccCCcccC-cCCCCCCCCCCcEEECCCCc
Q 043978 241 SNHLTGQLPHHVSGLLYLTNLDLFGNSLQ-----GKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQ 314 (683)
Q Consensus 241 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~~~L~~L~L~~n~ 314 (683)
+.+......+|.++++|+.+++.++.+. ...+.+|..+++|+.+++..+ +.. ....|.++.+|+.+.+..+
T Consensus 257 -~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 257 -NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp -TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-
T ss_pred -CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-
Confidence 4566667778888889999988887664 456677888889999988843 554 3345668888999888655
Q ss_pred CcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCC-CccEEEcccCCCC
Q 043978 315 IHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLP-SLLKLSFSNCNVS 380 (683)
Q Consensus 315 i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~-~L~~L~l~~~~l~ 380 (683)
++ .+...+|.++ +|+.+++.+|.+..+.. ..+..++ .++.|.+..+.+.
T Consensus 334 l~------------~I~~~aF~~~-~L~~l~l~~n~~~~l~~----~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 334 VT------------QINFSAFNNT-GIKEVKVEGTTPPQVFE----KVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CC------------EECTTSSSSS-CCCEEEECCSSCCBCCC----SSCCCSCTTCCEEEECGGGHH
T ss_pred cc------------EEcHHhCCCC-CCCEEEEcCCCCccccc----ccccCCCCCccEEEeCHHHHH
Confidence 44 4455578888 89999998888666543 2344553 6788888776543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=7.8e-14 Score=127.00 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=90.3
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 525 (683)
++++++|++++|.+.. ++......++|++|++++|.+.+ + ..+..+. +|++|++++|++++..+..|..+++|+.|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLR-RLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCS-SCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc-c-cccccCC-CCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4445555555555553 33333333478888888888873 3 3444444 78888888888887666666788888888
Q ss_pred EcCCCcccccCch--hhhcCCCCcEEEccCCcCCccCCc----cccCCCCCCEEEccCCcCc
Q 043978 526 DLNCNKFEGSLPR--SLAKCVKLEVVNVGNNMINDTFPC----WLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 526 ~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~ 581 (683)
++++|+++. .|. .+..+++|++|++++|++.. .|. .+..+++|+.|++++|...
T Consensus 94 ~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888863 444 67888888888888888874 444 3778888888888888764
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=4.6e-13 Score=120.83 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=47.6
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccC
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN 553 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 553 (683)
+.+++++|.+. .+|..+. ++|+.|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45555555554 3443332 2455555555555544444444444555555555544444444444444444444444
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcC
Q 043978 554 NMINDTFPCWLGSLPLLKILILRSNRF 580 (683)
Q Consensus 554 n~l~~~~~~~l~~l~~L~~L~l~~n~l 580 (683)
|.+++..+..|..+++|++|++++|++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 444433333344444444444444433
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=2.9e-11 Score=125.38 Aligned_cols=132 Identities=11% Similarity=0.106 Sum_probs=65.1
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCC
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 544 (683)
.+|.++..|+.+.+.++.. .+....+..+++|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 3455555555555544322 2222222223356666654 3344455566666666666666543 4445556666666
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcC
Q 043978 545 KLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEF 606 (683)
Q Consensus 545 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~ 606 (683)
+|+.+.+..+ ++.+...+|.++++|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCCE
Confidence 6666666543 444445566666666666666665321 1234455666666655544
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1.1e-12 Score=118.18 Aligned_cols=110 Identities=17% Similarity=0.092 Sum_probs=96.4
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
+.+.+++++|+++.+.. .+ .++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 56899999999987543 33 3789999999999998889999999999999999999998888888999999999999
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|++.+..+ ..+..+++|++|++++|++.+..+
T Consensus 87 ~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPR--GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCT--TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCH--HHhcCCCCCCEEEeCCCCCCCCch
Confidence 999987654 346788999999999999997665
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=8.6e-13 Score=119.39 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=45.9
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccC
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN 553 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 553 (683)
+.+++++|.+. .+|..+. ++|+.|++++|++++..+..|.++++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44555555554 4444332 2455555555555444444444444444444444444433333344444444444444
Q ss_pred CcCCccCCccccCCCCCCEEEccCCc
Q 043978 554 NMINDTFPCWLGSLPLLKILILRSNR 579 (683)
Q Consensus 554 n~l~~~~~~~l~~l~~L~~L~l~~n~ 579 (683)
|.+....+..|..+++|++|++++|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 44443333233333444443333333
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=2.7e-15 Score=139.69 Aligned_cols=112 Identities=28% Similarity=0.353 Sum_probs=62.4
Q ss_pred cccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCC
Q 043978 466 YICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVK 545 (683)
Q Consensus 466 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 545 (683)
.+..+++|++|++++|.+. .+| .+..+. +|+.|++++|+++. .|..+..+++|+.|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~-~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS-SLSGME-NLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC-CHHHHT-TCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc-ccc-ccccCC-CCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 5556666666666666665 344 444443 66666666666653 33444445566666666666653 23 4555566
Q ss_pred CcEEEccCCcCCccCC-ccccCCCCCCEEEccCCcCccc
Q 043978 546 LEVVNVGNNMINDTFP-CWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 546 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
|++|++++|.+.+..+ ..+..+++|++|++++|++.+.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 6666666666654222 2455566666666666665443
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=3.3e-12 Score=115.52 Aligned_cols=110 Identities=17% Similarity=0.086 Sum_probs=93.9
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
.-+.+++++|+++.++ ..+. ++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 13 ~~~~l~~~~n~l~~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp CSSEEECCSSCCSSCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCCCCccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 3478999999997554 4343 789999999999998889999999999999999999998777778999999999999
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|++.+..+ ..+..+++|++|++++|++.+..+
T Consensus 90 ~N~l~~l~~--~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPR--GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCT--TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCH--HHhccccCCCEEEeCCCCcccccc
Confidence 999986543 346789999999999999986543
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=2.6e-15 Score=139.75 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=125.0
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCh------hhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhh
Q 043978 467 ICSLSSLKYLSLSHNNLSGTIPP------CLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSL 540 (683)
Q Consensus 467 l~~l~~L~~L~Ls~n~i~~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 540 (683)
+.....++.++++.+.+.+.+|. .+..+. +|++|++++|++++. + .+..+++|+.|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~-~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLK-ACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTT-TCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCC-CCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcc-cccchh
Confidence 44455666667777776665554 777766 999999999999874 4 8889999999999999998 567788
Q ss_pred hcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcH--------
Q 043978 541 AKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPR-------- 612 (683)
Q Consensus 541 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~-------- 612 (683)
..+++|++|++++|.+++ +| .+..+++|++|++++|++....+ ...+..+++|++|++++|++.+.+|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 888999999999999986 44 58889999999999999975321 12456889999999999999866542
Q ss_pred -HHHhcchhhcccccccceee
Q 043978 613 -RNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 613 -~~~~~~~~L~~l~l~~n~~~ 632 (683)
..+..++.|+.++ +++++
T Consensus 167 ~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHhCCCcEEEC--CcccC
Confidence 3578888998887 55554
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=2e-10 Score=119.09 Aligned_cols=108 Identities=14% Similarity=0.021 Sum_probs=52.0
Q ss_pred ccccCCC-CCCEEEccCCcccccCCCCCCCCCCCCeeeccCcc---ccccCCccccCCCCCCEEEccCCcCcccCCcccc
Q 043978 202 YSIGNLL-FLETVDITYCNFMGSIPTSTGNLSKATEILFASNH---LTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF 277 (683)
Q Consensus 202 ~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 277 (683)
.+|.++. .|+.+.+... ++.....+|.++++|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++.....+|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3455553 4666666542 444445556666666666665442 33344445555555555555443 2223344445
Q ss_pred CCCCCcEEEccCCcccCcCCCCCCCCCCcEEECC
Q 043978 278 TLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLE 311 (683)
Q Consensus 278 ~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~ 311 (683)
.+.+|+.+.+..+...-....+..+..|+.+.+.
T Consensus 135 ~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 135 HCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred hhcccccccccceeeeecccceeccccccccccc
Confidence 5555555555433222122233344444444443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.2e-13 Score=141.27 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=82.1
Q ss_pred CCCceEEeCCCCCCCccCC--------CCCCCCcEEEccCCcccCCCCcc-ccCCCCCCEEEcCCCcCCCCCChhhhh--
Q 043978 425 WKNIRTLDLRNNKIQGSIL--------VPPPSTEVFLVSNNKLSGQIPPY-ICSLSSLKYLSLSHNNLSGTIPPCLGN-- 493 (683)
Q Consensus 425 ~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~-- 493 (683)
.+.++.|++++|.++.... ..+++|++|++++|.++...... ...+++|+.|+|++|.+++.....+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567888888888764211 12356666666666665322211 122445666666666664322222211
Q ss_pred --ccCcccEEECCCCccccc----ccccccCCCCccEEEcCCCcccccC----chhhhcCCCCcEEEccCCcCCccC---
Q 043978 494 --FTTQLITLHLKNNSLEGH----IHDTFENASNIQSFDLNCNKFEGSL----PRSLAKCVKLEVVNVGNNMINDTF--- 560 (683)
Q Consensus 494 --~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~--- 560 (683)
..++|++|+|++|.++.. ++..+..+++|++|+|++|.+++.. +..+..+++|++|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 123566666666666542 2233345566666666666655322 344455556666666666665432
Q ss_pred -CccccCCCCCCEEEccCCcCc
Q 043978 561 -PCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 561 -~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+..+...++|++|+|++|++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 222334456666666666654
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=4e-13 Score=137.33 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=94.4
Q ss_pred CcCcEEECCCCcccccCC--------CCCCCceEEeCCCCCCCccC----CCCCCCCcEEEccCCcccCCCCccc-----
Q 043978 405 KSLIDLDLSNNFLTHIAL--------HPWKNIRTLDLRNNKIQGSI----LVPPPSTEVFLVSNNKLSGQIPPYI----- 467 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~--------~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~i~~~~~~~l----- 467 (683)
+.|+.|++++|.++.... ...++|+.|++++|.++... ...+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 567777777777665321 12356777777777775321 1134567777777777764333332
Q ss_pred cCCCCCCEEEcCCCcCCCC----CChhhhhccCcccEEECCCCcccccc----cccccCCCCccEEEcCCCccccc----
Q 043978 468 CSLSSLKYLSLSHNNLSGT----IPPCLGNFTTQLITLHLKNNSLEGHI----HDTFENASNIQSFDLNCNKFEGS---- 535 (683)
Q Consensus 468 ~~l~~L~~L~Ls~n~i~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~---- 535 (683)
...++|++|+|++|.+++. ++..+.... +|++|+|++|.+++.. +..+...++|+.|+|++|.+++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2356677777777776521 222233333 6777777777776532 44555666777777777777643
Q ss_pred CchhhhcCCCCcEEEccCCcCCccCCccc
Q 043978 536 LPRSLAKCVKLEVVNVGNNMINDTFPCWL 564 (683)
Q Consensus 536 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 564 (683)
++..+..+++|++|++++|.|++.....+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 23344556777777777777765544333
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=5e-11 Score=121.54 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=69.5
Q ss_pred EEEcCCC-cCCCCCChhhhhccCcccEEECCC-CcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 475 YLSLSHN-NLSGTIPPCLGNFTTQLITLHLKN-NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 475 ~L~Ls~n-~i~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
.++++++ .++ .+|. +.... +|+.|+|++ |++++..+..|.++++|+.|+|++|++++..|..|..+++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566766 666 5666 54443 677777775 77776666677777777777777777776666677777777777777
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCc
Q 043978 553 NNMINDTFPCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 553 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+|.++...+..|..++ |+.|++++|++.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7777655555555544 677777776664
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.13 E-value=1e-08 Score=105.77 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=38.0
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCC
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 544 (683)
.+|.++.+|+.+.+..+ +. .++...+..+.+|+.+.+.++.++.+...+|.++.+|+.+++..+ ++.+...+|.+|+
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 44445555555555332 22 233322222334555555444444444445555555555555432 3333444455555
Q ss_pred CCcEEEcc
Q 043978 545 KLEVVNVG 552 (683)
Q Consensus 545 ~L~~L~l~ 552 (683)
+|+.+.+.
T Consensus 334 ~L~~i~ip 341 (379)
T 4h09_A 334 ALSTISYP 341 (379)
T ss_dssp TCCCCCCC
T ss_pred CCCEEEEC
Confidence 55554443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.5e-10 Score=118.01 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=72.7
Q ss_pred EEEccCC-cccCCCCccccCCCCCCEEEcCC-CcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcC
Q 043978 451 VFLVSNN-KLSGQIPPYICSLSSLKYLSLSH-NNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLN 528 (683)
Q Consensus 451 ~L~l~~n-~i~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 528 (683)
.++.+++ .+.. +|. +..+++|+.|+|++ |.+.+..+..+..+. +|+.|+|++|+|++..+..|.++++|+.|+|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4567776 6663 556 77777788888875 777733334444443 78888888888877777777778888888888
Q ss_pred CCcccccCchhhhcCCCCcEEEccCCcCCc
Q 043978 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMIND 558 (683)
Q Consensus 529 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 558 (683)
+|++++..+..|..++ |+.|++++|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888766555565555 8888888887763
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.05 E-value=1.9e-08 Score=103.58 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=45.5
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCC
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 544 (683)
.++.++..|+.+.+..+ ++ .+....+....+|+.+.+..+ +..+...+|.++++|+.+.+.++.++.+...+|.+|+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 34445555555555433 22 232222222234444444322 3333344444455555555544444444444444555
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEc
Q 043978 545 KLEVVNVGNNMINDTFPCWLGSLPLLKILIL 575 (683)
Q Consensus 545 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 575 (683)
+|+.+.+..+ ++.+...+|.++++|+.+.+
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 5555444332 33233334444444444433
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=5.1e-09 Score=105.83 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=46.7
Q ss_pred CCCCCCEEEccCCcccccCCCCC---CCCCCCCeeeccCccccccC----CccccCCCCCCEEEccCCcCcccCCccccC
Q 043978 206 NLLFLETVDITYCNFMGSIPTST---GNLSKATEILFASNHLTGQL----PHHVSGLLYLTNLDLFGNSLQGKVPSWLFT 278 (683)
Q Consensus 206 ~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 278 (683)
.+++|++|++.+|.+....+..+ ..+++|++|+++.|.+.+.. +..+..+++|+.|++++|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 35566666666665543211111 23567777777777666532 223345677888888887776544443433
Q ss_pred -CCCCcEEEccCCc
Q 043978 279 -LPSLVSVNLAWNK 291 (683)
Q Consensus 279 -l~~L~~L~L~~n~ 291 (683)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3556777665
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=1.8e-08 Score=91.78 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=44.8
Q ss_pred cCCCCccEEEcCCCccccc----CchhhhcCCCCcEEEccCCcCCcc----CCccccCCCCCCEEEc--cCCcCcccCCC
Q 043978 517 ENASNIQSFDLNCNKFEGS----LPRSLAKCVKLEVVNVGNNMINDT----FPCWLGSLPLLKILIL--RSNRFYGPLCK 586 (683)
Q Consensus 517 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l--~~n~l~~~~~~ 586 (683)
...++|++|+|++|.+.+. +...+...++|++|+|++|.|.+. +...+...++|++|++ ++|.+...-..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3344555555555554421 123344445566666666665543 2334445556666666 55655421100
Q ss_pred --CccccCCCCCcEEeCCCCcCC
Q 043978 587 --SITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 587 --~~~~~~l~~L~~L~ls~n~~~ 607 (683)
...+...++|++|++++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 012233466777777777664
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=1.8e-08 Score=101.76 Aligned_cols=158 Identities=12% Similarity=0.167 Sum_probs=87.6
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccccccccc--CCCCccEEEcCC--Ccccc-----c
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFE--NASNIQSFDLNC--NKFEG-----S 535 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~-----~ 535 (683)
..+..+|+|+.|++++|.-. .++. + . .++|+.|++..|.+.......+. .+++|+.|+|+. |...+ .
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 44566777777777766311 2333 2 2 23777777777776544333332 567777777742 21110 0
Q ss_pred Cchhh--hcCCCCcEEEccCCcCCccCCcccc---CCCCCCEEEccCCcCcccCCCC--ccccCCCCCcEEeCCCCcCCC
Q 043978 536 LPRSL--AKCVKLEVVNVGNNMINDTFPCWLG---SLPLLKILILRSNRFYGPLCKS--ITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 536 ~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~ls~n~~~~ 608 (683)
+...+ ..+++|++|++++|.+.+..+..+. .+++|++|+|+.|.+...-+.. ..+..+++|+.|++++|.+++
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 11122 2467888888888877654333232 4678888888888775421100 112356788888888887652
Q ss_pred CCcHHHHhcchh-h-cccccccce
Q 043978 609 FLPRRNFTSMEA-M-KNVDEQATR 630 (683)
Q Consensus 609 ~~p~~~~~~~~~-L-~~l~l~~n~ 630 (683)
.....+.. + ..+++++++
T Consensus 322 ----~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 322 ----EMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp ----HHHHHHHHHCCSEEECCSBC
T ss_pred ----HHHHHHHHHcCCEEEecCCc
Confidence 22333332 2 345555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=3.9e-08 Score=89.57 Aligned_cols=116 Identities=12% Similarity=0.112 Sum_probs=82.8
Q ss_pred ccccCCCCCCEEEcCCC-cCCCC----CChhhhhccCcccEEECCCCccccc----ccccccCCCCccEEEcCCCccccc
Q 043978 465 PYICSLSSLKYLSLSHN-NLSGT----IPPCLGNFTTQLITLHLKNNSLEGH----IHDTFENASNIQSFDLNCNKFEGS 535 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n-~i~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 535 (683)
..+...++|++|+|++| .+.+. +...+... ++|++|+|++|.+... +...+...++|++|+|++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 45667888999999988 77632 22233333 3789999999988754 234455667899999999988753
Q ss_pred ----CchhhhcCCCCcEEEc--cCCcCCccC----CccccCCCCCCEEEccCCcCc
Q 043978 536 ----LPRSLAKCVKLEVVNV--GNNMINDTF----PCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 536 ----~~~~l~~l~~L~~L~l--~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+...+...++|++|++ ++|.+.+.. ...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456777788999999 788887652 334556688999999988864
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.1e-07 Score=90.93 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=47.9
Q ss_pred hcCCCCcEEEccCCcCCcc--CCccccCCCCCCEEEccCCcCcccCCCCccccCCC--CCcEEeCCCCcCCCCCcH----
Q 043978 541 AKCVKLEVVNVGNNMINDT--FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQ--ALRIIDLSRNEFKDFLPR---- 612 (683)
Q Consensus 541 ~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~--~L~~L~ls~n~~~~~~p~---- 612 (683)
.++++|++|+|++|.+++. +|..++.+++|+.|+|++|++.+.. .+..+. .|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~----~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER----ELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG----GGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch----hhhhcccCCcceEEccCCcCccccCcchhH
Confidence 4456666666666666652 3344456666666666666665431 112222 677777777777655541
Q ss_pred --HHHhcchhhccccc
Q 043978 613 --RNFTSMEAMKNVDE 626 (683)
Q Consensus 613 --~~~~~~~~L~~l~l 626 (683)
..+..+++|+.||-
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 34666777777663
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=2.3e-07 Score=81.93 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=55.7
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCc-ccccCchhhhcC----CCCcEEEccCCc-CCccCCccccCCCCC
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNK-FEGSLPRSLAKC----VKLEVVNVGNNM-INDTFPCWLGSLPLL 570 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~~l~~L 570 (683)
.|+.||+++|.++......+.++++|+.|+|++|. +++..-..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 67777777777776655666777777777777775 654444445543 367777777773 766544456667777
Q ss_pred CEEEccCCc
Q 043978 571 KILILRSNR 579 (683)
Q Consensus 571 ~~L~l~~n~ 579 (683)
+.|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777775
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=2e-07 Score=89.05 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=67.2
Q ss_pred EECCCCccccc---ccccccCCCCccEEEcCCCcccc--cCchhhhcCCCCcEEEccCCcCCccCCccccCCC--CCCEE
Q 043978 501 LHLKNNSLEGH---IHDTFENASNIQSFDLNCNKFEG--SLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLP--LLKIL 573 (683)
Q Consensus 501 L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L 573 (683)
++++.|+.... ......++++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 55666643321 22233567889999999999886 3446677889999999999988865 2344444 89999
Q ss_pred EccCCcCcccCCCC-----ccccCCCCCcEEeC
Q 043978 574 ILRSNRFYGPLCKS-----ITTFSFQALRIIDL 601 (683)
Q Consensus 574 ~l~~n~l~~~~~~~-----~~~~~l~~L~~L~l 601 (683)
++++|++.+..+.. .....+|+|+.||=
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 99999987644321 12456788888763
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=2.1e-06 Score=75.77 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=15.1
Q ss_pred CCCEEEccCCc-CcccCCccccCCCCCcEEEccCC
Q 043978 257 YLTNLDLFGNS-LQGKVPSWLFTLPSLVSVNLAWN 290 (683)
Q Consensus 257 ~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n 290 (683)
+|++|++++|. +++..-..+..+++|++|++++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 34555555442 44333333444444444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.54 E-value=3.3e-05 Score=69.53 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=56.8
Q ss_pred cccEEECCCC-ccccc----ccccccCCCCccEEEcCCCccccc----CchhhhcCCCCcEEEccCCcCCcc----CCcc
Q 043978 497 QLITLHLKNN-SLEGH----IHDTFENASNIQSFDLNCNKFEGS----LPRSLAKCVKLEVVNVGNNMINDT----FPCW 563 (683)
Q Consensus 497 ~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~ 563 (683)
.|++|+|++| +|... +.+++..-+.|+.|+|++|++.+. +...+...++|++|+|++|.|.+. +.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4445555443 44321 223444445666666666665532 234455566677777777777654 2233
Q ss_pred ccCCCCCCEEEccCCcC---cccC--CCCccccCCCCCcEEeCCCCcC
Q 043978 564 LGSLPLLKILILRSNRF---YGPL--CKSITTFSFQALRIIDLSRNEF 606 (683)
Q Consensus 564 l~~l~~L~~L~l~~n~l---~~~~--~~~~~~~~l~~L~~L~ls~n~~ 606 (683)
+...+.|+.|+|++|.. .... .....+...+.|+.|+++.|.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 44556677777765432 1100 0011233456777788776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=2.8e-05 Score=69.99 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=78.4
Q ss_pred cccCCCCCCEEEcCCC-cCCCC----CChhhhhccCcccEEECCCCcccccc----cccccCCCCccEEEcCCCccccc-
Q 043978 466 YICSLSSLKYLSLSHN-NLSGT----IPPCLGNFTTQLITLHLKNNSLEGHI----HDTFENASNIQSFDLNCNKFEGS- 535 (683)
Q Consensus 466 ~l~~l~~L~~L~Ls~n-~i~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~- 535 (683)
.+..-+.|++|+|++| .|.+. +-..+... ..|+.|+|++|+|.+.. .+++..-+.|+.|+|++|.+.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 4456678999999885 66521 22334433 38999999999987653 34455668899999999998743
Q ss_pred ---CchhhhcCCCCcEEEccCC---cCCcc----CCccccCCCCCCEEEccCCcC
Q 043978 536 ---LPRSLAKCVKLEVVNVGNN---MINDT----FPCWLGSLPLLKILILRSNRF 580 (683)
Q Consensus 536 ---~~~~l~~l~~L~~L~l~~n---~l~~~----~~~~l~~l~~L~~L~l~~n~l 580 (683)
+.+++..-+.|++|+|++| .+.+. +...+...+.|+.|+++.|.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2345666778999999865 34432 334566778899999987764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.55 E-value=0.0034 Score=52.61 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=15.0
Q ss_pred ccEEEcCCCcccccCchhhhcCCCCcEEEccCCcC
Q 043978 522 IQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556 (683)
Q Consensus 522 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 556 (683)
|+.|+|++|+++...+..|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333444444444444444433
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.32 E-value=0.0073 Score=50.51 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=33.2
Q ss_pred EEeCCCCCCC--ccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCC
Q 043978 430 TLDLRNNKIQ--GSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLS 484 (683)
Q Consensus 430 ~L~l~~n~l~--~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~ 484 (683)
.++.+++.++ ......++++++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 333234455666666666666555666777777777777777664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.45 E-value=4.2 Score=31.62 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=28.3
Q ss_pred cccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCC
Q 043978 507 SLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNN 554 (683)
Q Consensus 507 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 554 (683)
.++.+...+|.+|++|+.+.|-.+ ++.+...+|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444455566666666666666654 44455566666666666666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.24 E-value=10 Score=29.37 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=39.4
Q ss_pred CCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCc
Q 043978 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNR 579 (683)
Q Consensus 529 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 579 (683)
+..++.+...+|.+|++|+.+.+-.+ ++.+....|.++.+|+.+.+.+..
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 34566677789999999999999876 444666789999999999987653
Done!