Query 043979
Match_columns 443
No_of_seqs 308 out of 2260
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 10:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 1.7E-90 3.7E-95 657.7 41.7 403 1-408 203-646 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 4.3E-82 9.3E-87 675.2 51.9 440 1-443 171-653 (653)
3 KOG0101 Molecular chaperones H 100.0 4.2E-73 9.1E-78 578.1 37.6 404 1-406 174-615 (620)
4 PTZ00186 heat shock 70 kDa pre 100.0 1E-70 2.2E-75 583.6 47.8 396 1-407 191-627 (657)
5 PLN03184 chloroplast Hsp70; Pr 100.0 2.7E-69 5.8E-74 576.8 49.9 397 1-410 203-641 (673)
6 PRK13411 molecular chaperone D 100.0 1.4E-69 3E-74 578.4 47.4 399 1-408 164-604 (653)
7 PRK13410 molecular chaperone D 100.0 3.9E-69 8.4E-74 573.9 45.6 395 1-405 166-607 (668)
8 PRK00290 dnaK molecular chaper 100.0 3.1E-68 6.7E-73 568.1 49.5 395 1-408 164-600 (627)
9 PTZ00400 DnaK-type molecular c 100.0 3.8E-68 8.2E-73 567.7 46.4 395 1-408 205-641 (663)
10 CHL00094 dnaK heat shock prote 100.0 3.1E-67 6.8E-72 558.9 48.2 392 1-407 166-601 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 1.3E-66 2.8E-71 553.6 47.5 390 1-404 161-594 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 6.3E-66 1.4E-70 545.9 48.4 388 1-405 160-585 (599)
13 KOG0102 Molecular chaperones m 100.0 1.4E-66 3.1E-71 510.7 30.9 398 1-408 191-630 (640)
14 PRK05183 hscA chaperone protei 100.0 8.3E-65 1.8E-69 538.4 46.4 384 1-405 180-601 (616)
15 PRK01433 hscA chaperone protei 100.0 1.3E-62 2.8E-67 517.7 44.6 373 1-405 172-587 (595)
16 PF00012 HSP70: Hsp70 protein; 100.0 2.4E-62 5.2E-67 523.7 43.9 393 1-405 166-602 (602)
17 COG0443 DnaK Molecular chapero 100.0 4.9E-62 1.1E-66 510.6 37.9 388 1-405 151-578 (579)
18 KOG0103 Molecular chaperones H 100.0 2.5E-54 5.4E-59 436.2 34.7 395 1-405 168-646 (727)
19 KOG0104 Molecular chaperones G 100.0 1E-47 2.2E-52 389.1 30.2 397 1-407 189-739 (902)
20 PRK11678 putative chaperone; P 100.0 7.7E-32 1.7E-36 275.2 22.1 192 1-202 188-448 (450)
21 PRK13928 rod shape-determining 99.9 2.4E-25 5.1E-30 221.5 19.8 184 1-202 126-324 (336)
22 PRK13927 rod shape-determining 99.9 2.2E-23 4.7E-28 207.3 19.4 183 1-201 127-324 (334)
23 PRK13929 rod-share determining 99.9 1.7E-22 3.8E-27 200.6 19.0 181 1-199 129-324 (335)
24 TIGR00904 mreB cell shape dete 99.9 4.5E-22 9.8E-27 197.7 18.6 183 1-201 129-327 (333)
25 PRK13930 rod shape-determining 99.9 1.2E-21 2.5E-26 195.0 18.1 184 1-202 131-329 (335)
26 TIGR02529 EutJ ethanolamine ut 99.8 1.5E-18 3.2E-23 164.0 13.4 141 1-197 92-238 (239)
27 PF06723 MreB_Mbl: MreB/Mbl pr 99.8 1.7E-18 3.6E-23 169.2 11.5 182 1-200 124-320 (326)
28 TIGR01174 ftsA cell division p 99.8 3.8E-18 8.3E-23 172.0 13.7 170 2-198 176-371 (371)
29 PRK15080 ethanolamine utilizat 99.7 1.7E-17 3.8E-22 159.3 14.3 140 2-199 120-267 (267)
30 PRK09472 ftsA cell division pr 99.7 1.4E-16 3.1E-21 162.8 16.8 171 2-200 184-387 (420)
31 COG1077 MreB Actin-like ATPase 99.6 3.1E-15 6.8E-20 141.6 14.6 184 2-203 133-333 (342)
32 COG0849 ftsA Cell division ATP 99.3 2.9E-11 6.3E-16 121.5 15.1 176 2-202 183-381 (418)
33 PRK13917 plasmid segregation p 99.2 4.5E-10 9.8E-15 111.9 13.9 169 2-204 157-339 (344)
34 TIGR03739 PRTRC_D PRTRC system 98.9 5.3E-08 1.2E-12 96.3 14.9 166 2-199 143-318 (320)
35 cd00012 ACTIN Actin; An ubiqui 98.7 5.7E-08 1.2E-12 98.1 8.0 176 2-201 128-347 (371)
36 COG4820 EutJ Ethanolamine util 98.5 1.3E-07 2.8E-12 84.0 5.0 147 1-197 124-270 (277)
37 PF06406 StbA: StbA protein; 98.5 7.8E-07 1.7E-11 87.8 11.0 162 2-196 144-316 (318)
38 smart00268 ACTIN Actin. ACTIN 98.4 7.2E-07 1.6E-11 90.2 8.7 175 2-201 128-347 (373)
39 TIGR01175 pilM type IV pilus a 98.3 1.6E-05 3.5E-10 79.5 14.0 109 27-177 189-307 (348)
40 PF11104 PilM_2: Type IV pilus 98.3 1.3E-05 2.8E-10 80.0 13.2 132 25-199 179-339 (340)
41 PTZ00280 Actin-related protein 98.1 2E-05 4.3E-10 80.9 11.8 166 2-177 135-337 (414)
42 PF00022 Actin: Actin; InterP 98.1 1.9E-05 4.1E-10 80.3 10.1 184 2-202 127-368 (393)
43 TIGR00241 CoA_E_activ CoA-subs 98.0 2.1E-05 4.6E-10 74.9 9.3 68 125-198 180-248 (248)
44 PF08841 DDR: Diol dehydratase 98.0 5.9E-05 1.3E-09 70.8 11.3 49 150-198 273-328 (332)
45 PTZ00281 actin; Provisional 97.7 0.00013 2.9E-09 73.8 8.7 174 3-200 135-349 (376)
46 PTZ00004 actin-2; Provisional 97.7 0.00019 4.1E-09 72.7 9.1 175 2-200 134-351 (378)
47 PTZ00452 actin; Provisional 97.5 0.00065 1.4E-08 68.7 10.2 174 3-200 134-348 (375)
48 PTZ00466 actin-like protein; P 97.4 0.00097 2.1E-08 67.6 10.8 174 3-200 140-353 (380)
49 PF07520 SrfB: Virulence facto 97.3 0.0072 1.6E-07 66.5 16.3 85 114-203 730-836 (1002)
50 COG1924 Activator of 2-hydroxy 97.3 0.0032 6.9E-08 61.9 12.0 72 125-201 318-390 (396)
51 TIGR02259 benz_CoA_red_A benzo 97.3 0.0032 7E-08 62.7 12.0 46 154-199 383-432 (432)
52 PF02782 FGGY_C: FGGY family o 97.2 0.00073 1.6E-08 61.7 6.2 76 124-201 120-196 (198)
53 PRK13317 pantothenate kinase; 97.1 0.011 2.3E-07 57.1 13.7 49 152-200 222-273 (277)
54 TIGR03192 benz_CoA_bzdQ benzoy 97.0 0.0024 5.2E-08 61.6 7.8 47 154-201 241-288 (293)
55 TIGR02261 benz_CoA_red_D benzo 96.7 0.0052 1.1E-07 58.4 7.7 45 155-199 214-262 (262)
56 PRK15027 xylulokinase; Provisi 96.5 0.0068 1.5E-07 63.5 7.8 52 152-204 386-437 (484)
57 TIGR01315 5C_CHO_kinase FGGY-f 96.5 0.008 1.7E-07 63.9 8.1 85 118-204 409-493 (541)
58 TIGR03286 methan_mark_15 putat 96.5 0.0072 1.6E-07 60.7 7.1 46 154-200 357-402 (404)
59 PLN02669 xylulokinase 96.5 0.0091 2E-07 63.6 8.4 72 127-201 421-492 (556)
60 PRK00047 glpK glycerol kinase; 96.0 0.017 3.7E-07 60.8 7.6 77 126-204 376-453 (498)
61 TIGR01311 glycerol_kin glycero 96.0 0.015 3.2E-07 61.1 7.1 51 152-204 399-449 (493)
62 TIGR01312 XylB D-xylulose kina 96.0 0.02 4.2E-07 59.9 7.8 77 126-204 363-440 (481)
63 COG4972 PilM Tfp pilus assembl 95.9 0.12 2.5E-06 50.3 11.8 116 27-177 194-312 (354)
64 PTZ00294 glycerol kinase-like 95.9 0.024 5.1E-07 59.8 7.8 73 127-204 380-456 (504)
65 TIGR02628 fuculo_kin_coli L-fu 95.9 0.021 4.5E-07 59.6 7.2 76 125-204 365-443 (465)
66 TIGR01234 L-ribulokinase L-rib 95.8 0.025 5.5E-07 60.0 7.9 51 152-204 435-486 (536)
67 PRK04123 ribulokinase; Provisi 95.8 0.024 5.3E-07 60.3 7.6 76 127-204 413-489 (548)
68 COG4457 SrfB Uncharacterized p 95.7 0.19 4.1E-06 52.9 13.2 84 115-203 743-848 (1014)
69 PRK10331 L-fuculokinase; Provi 95.7 0.027 6E-07 58.7 7.4 80 120-204 359-439 (470)
70 COG1069 AraB Ribulose kinase [ 95.6 0.12 2.7E-06 53.4 11.4 80 120-204 399-481 (544)
71 TIGR01314 gntK_FGGY gluconate 95.5 0.037 8E-07 58.4 7.6 74 126-204 374-451 (505)
72 PLN02295 glycerol kinase 95.5 0.036 7.8E-07 58.5 7.5 77 126-204 380-462 (512)
73 TIGR02627 rhamnulo_kin rhamnul 95.5 0.031 6.8E-07 58.0 6.9 50 152-204 387-436 (454)
74 COG5277 Actin and related prot 95.4 0.072 1.6E-06 54.9 8.9 49 152-200 362-417 (444)
75 PF01968 Hydantoinase_A: Hydan 95.3 0.038 8.3E-07 53.8 6.5 68 127-197 216-283 (290)
76 KOG2517 Ribulose kinase and re 95.3 0.056 1.2E-06 56.0 7.9 79 125-205 386-465 (516)
77 PRK10939 autoinducer-2 (AI-2) 95.2 0.049 1.1E-06 57.7 7.5 51 152-204 409-459 (520)
78 PRK10640 rhaB rhamnulokinase; 95.0 0.051 1.1E-06 56.7 6.9 50 152-204 375-424 (471)
79 KOG2531 Sugar (pentulose and h 94.9 0.088 1.9E-06 53.1 7.5 58 143-202 433-490 (545)
80 KOG0679 Actin-related protein 94.2 0.78 1.7E-05 45.5 12.1 24 153-176 342-365 (426)
81 COG1070 XylB Sugar (pentulose 94.0 0.25 5.4E-06 52.0 9.2 50 151-202 400-449 (502)
82 PF14450 FtsA: Cell division p 93.7 0.19 4.1E-06 42.0 6.2 26 28-53 1-27 (120)
83 PF01869 BcrAD_BadFG: BadF/Bad 92.5 0.43 9.3E-06 45.8 7.5 67 130-199 201-271 (271)
84 PTZ00009 heat shock 70 kDa pro 90.8 0.63 1.4E-05 50.7 7.3 79 357-436 538-640 (653)
85 PF02543 CmcH_NodU: Carbamoylt 90.2 6.5 0.00014 39.5 13.4 82 117-203 131-215 (360)
86 PRK09585 anmK anhydro-N-acetyl 90.0 2.2 4.7E-05 42.9 9.7 71 126-200 263-337 (365)
87 KOG0676 Actin and related prot 90.0 0.86 1.9E-05 45.7 6.9 54 147-200 285-345 (372)
88 COG0554 GlpK Glycerol kinase [ 89.1 1.3 2.9E-05 45.4 7.4 86 117-204 365-452 (499)
89 COG2377 Predicted molecular ch 88.8 2.8 6.1E-05 41.6 9.2 55 148-202 286-344 (371)
90 PRK10719 eutA reactivating fac 88.6 0.46 1E-05 48.8 3.8 34 7-45 132-165 (475)
91 KOG0681 Actin-related protein 87.9 0.6 1.3E-05 48.2 4.1 66 136-201 540-614 (645)
92 PLN02666 5-oxoprolinase 87.1 7.3 0.00016 45.6 12.7 76 119-197 454-530 (1275)
93 TIGR03281 methan_mark_12 putat 86.6 4.1 8.9E-05 39.5 8.7 84 118-204 222-314 (326)
94 PF03702 UPF0075: Uncharacteri 86.2 2.8 6.1E-05 42.1 7.8 74 125-201 260-337 (364)
95 TIGR00555 panK_eukar pantothen 86.0 2.1 4.5E-05 41.4 6.5 47 151-197 229-278 (279)
96 PF02541 Ppx-GppA: Ppx/GppA ph 85.6 0.63 1.4E-05 45.1 2.8 42 2-44 89-130 (285)
97 KOG0680 Actin-related protein 82.5 14 0.0003 36.1 10.3 24 153-176 318-341 (400)
98 KOG0677 Actin-related protein 82.0 1.5 3.2E-05 41.4 3.4 88 117-204 249-364 (389)
99 PRK00976 hypothetical protein; 80.6 6.7 0.00015 38.6 7.6 50 152-204 263-314 (326)
100 PRK03011 butyrate kinase; Prov 80.4 3.5 7.5E-05 41.5 5.8 67 131-197 273-343 (358)
101 PF07318 DUF1464: Protein of u 78.5 7.2 0.00016 38.6 7.1 71 130-204 242-318 (343)
102 TIGR00143 hypF [NiFe] hydrogen 78.0 6.2 0.00013 43.4 7.2 49 152-200 658-711 (711)
103 PRK11031 guanosine pentaphosph 76.7 2.8 6.2E-05 44.1 4.1 42 1-44 108-150 (496)
104 PRK10854 exopolyphosphatase; P 76.5 3.3 7.1E-05 43.8 4.5 43 1-45 113-156 (513)
105 PF00349 Hexokinase_1: Hexokin 76.1 8.5 0.00018 35.4 6.6 26 23-48 60-85 (206)
106 TIGR03706 exo_poly_only exopol 73.5 3.4 7.3E-05 40.4 3.5 42 1-44 102-143 (300)
107 COG0145 HyuA N-methylhydantoin 73.5 3.2 7E-05 45.1 3.6 39 3-44 258-296 (674)
108 TIGR03123 one_C_unchar_1 proba 73.4 2.4 5.2E-05 41.8 2.4 19 26-44 128-146 (318)
109 PF07820 TraC: TraC-like prote 68.4 16 0.00034 28.8 5.4 19 390-408 46-64 (92)
110 COG5026 Hexokinase [Carbohydra 68.4 27 0.00059 35.6 8.5 30 24-53 73-103 (466)
111 COG0248 GppA Exopolyphosphatas 66.4 6.5 0.00014 41.2 3.9 41 2-44 106-147 (492)
112 COG0533 QRI7 Metal-dependent p 64.9 27 0.00058 34.6 7.5 72 121-197 231-307 (342)
113 KOG2708 Predicted metalloprote 61.8 81 0.0017 29.5 9.5 76 118-198 224-301 (336)
114 PRK09604 UGMP family protein; 61.6 21 0.00045 35.5 6.4 64 135-203 242-310 (332)
115 PTZ00340 O-sialoglycoprotein e 61.4 20 0.00043 35.8 6.1 58 133-195 249-307 (345)
116 COG2192 Predicted carbamoyl tr 59.6 2.4E+02 0.0052 30.0 13.6 82 118-204 255-338 (555)
117 PF14574 DUF4445: Domain of un 58.3 23 0.0005 36.3 6.1 84 115-199 291-375 (412)
118 TIGR03723 bact_gcp putative gl 58.1 28 0.0006 34.3 6.5 56 136-196 248-308 (314)
119 PRK05082 N-acetylmannosamine k 57.4 44 0.00094 32.2 7.7 49 152-200 233-287 (291)
120 KOG0797 Actin-related protein 57.1 4.5 9.8E-05 41.7 0.7 52 152-203 526-591 (618)
121 PRK09605 bifunctional UGMP fam 55.9 29 0.00062 36.8 6.7 64 136-204 234-302 (535)
122 PRK09557 fructokinase; Reviewe 55.6 23 0.00049 34.4 5.5 48 152-199 244-299 (301)
123 PRK13310 N-acetyl-D-glucosamin 53.3 49 0.0011 32.1 7.4 48 152-199 245-300 (303)
124 PF06277 EutA: Ethanolamine ut 52.9 13 0.00029 38.3 3.4 22 24-45 141-162 (473)
125 TIGR00744 ROK_glcA_fam ROK fam 52.7 21 0.00046 34.8 4.8 70 130-200 230-309 (318)
126 PF02801 Ketoacyl-synt_C: Beta 52.5 21 0.00045 29.5 3.9 47 133-179 25-73 (119)
127 PRK13848 conjugal transfer pro 49.1 48 0.001 26.1 5.0 19 390-408 47-65 (98)
128 COG3426 Butyrate kinase [Energ 49.0 51 0.0011 31.8 6.3 50 148-197 292-344 (358)
129 PLN02362 hexokinase 47.7 37 0.0008 35.8 5.7 26 23-48 92-117 (509)
130 PF12207 DUF3600: Domain of un 47.4 1.9E+02 0.0041 25.0 8.7 65 330-394 38-120 (162)
131 PLN02377 3-ketoacyl-CoA syntha 47.0 57 0.0012 34.4 7.0 55 123-177 164-219 (502)
132 PF13941 MutL: MutL protein 46.1 14 0.00029 38.4 2.2 29 149-177 382-411 (457)
133 KOG1385 Nucleoside phosphatase 45.9 17 0.00037 36.8 2.7 23 25-47 212-234 (453)
134 TIGR00329 gcp_kae1 metallohydr 45.4 36 0.00078 33.3 5.0 38 134-176 245-282 (305)
135 PRK14878 UGMP family protein; 45.1 44 0.00095 33.0 5.6 37 135-176 229-265 (323)
136 PLN03173 chalcone synthase; Pr 44.7 80 0.0017 32.1 7.5 49 129-177 100-149 (391)
137 PLN03170 chalcone synthase; Pr 44.0 71 0.0015 32.6 7.1 51 127-177 102-153 (401)
138 PLN02596 hexokinase-like 43.3 48 0.001 34.8 5.7 26 23-48 93-118 (490)
139 PF08392 FAE1_CUT1_RppA: FAE1/ 42.4 67 0.0015 31.2 6.1 44 134-177 86-130 (290)
140 PRK09698 D-allose kinase; Prov 42.4 88 0.0019 30.2 7.3 50 151-200 235-295 (302)
141 TIGR02707 butyr_kinase butyrat 41.9 96 0.0021 31.1 7.5 45 152-196 293-340 (351)
142 PLN03172 chalcone synthase fam 40.7 78 0.0017 32.3 6.7 53 125-177 96-149 (393)
143 PRK07515 3-oxoacyl-(acyl carri 39.7 30 0.00065 34.8 3.6 38 128-165 266-303 (372)
144 KOG1369 Hexokinase [Carbohydra 39.0 1.4E+02 0.0031 31.1 8.2 27 23-49 83-109 (474)
145 PLN03168 chalcone synthase; Pr 38.9 1E+02 0.0022 31.4 7.2 53 125-177 95-148 (389)
146 COG4907 Predicted membrane pro 38.7 26 0.00056 35.9 2.7 20 206-225 293-312 (595)
147 cd04036 C2_cPLA2 C2 domain pre 37.3 2.2E+02 0.0048 23.0 8.5 62 246-312 52-115 (119)
148 COG0533 QRI7 Metal-dependent p 37.1 78 0.0017 31.4 5.8 48 125-172 44-91 (342)
149 PLN02854 3-ketoacyl-CoA syntha 36.5 66 0.0014 34.1 5.5 45 133-177 190-235 (521)
150 cd00327 cond_enzymes Condensin 35.6 1.3E+02 0.0027 27.9 7.0 44 135-178 11-56 (254)
151 PLN02914 hexokinase 34.5 96 0.0021 32.6 6.3 25 24-48 93-117 (490)
152 KOG2003 TPR repeat-containing 34.4 1.1E+02 0.0024 31.5 6.4 24 379-402 709-732 (840)
153 PRK00180 acetate kinase A/prop 34.2 1.1E+02 0.0024 31.2 6.6 46 128-176 302-348 (402)
154 PTZ00107 hexokinase; Provision 34.1 46 0.001 34.7 3.9 25 24-48 72-96 (464)
155 PRK14878 UGMP family protein; 34.0 58 0.0012 32.2 4.5 45 126-170 39-83 (323)
156 cd02198 YjgH_like YjgH belongs 33.8 85 0.0018 25.4 4.8 49 129-177 32-82 (111)
157 PRK12419 riboflavin synthase s 33.5 40 0.00087 29.6 2.8 60 131-200 24-83 (158)
158 TIGR03722 arch_KAE1 universal 32.8 70 0.0015 31.5 4.8 43 127-169 41-83 (322)
159 KOG2707 Predicted metalloprote 32.6 1.3E+02 0.0029 29.9 6.5 64 132-195 285-349 (405)
160 PRK12879 3-oxoacyl-(acyl carri 32.2 1E+02 0.0022 30.0 5.9 48 127-177 219-266 (325)
161 TIGR03722 arch_KAE1 universal 32.2 89 0.0019 30.8 5.5 53 137-194 232-289 (322)
162 PLN02192 3-ketoacyl-CoA syntha 32.0 1.1E+02 0.0023 32.5 6.1 54 124-177 169-223 (511)
163 PRK00865 glutamate racemase; P 31.9 93 0.002 29.6 5.4 74 119-198 143-219 (261)
164 PF01150 GDA1_CD39: GDA1/CD39 31.2 59 0.0013 33.5 4.2 20 25-44 163-182 (434)
165 TIGR00329 gcp_kae1 metallohydr 30.9 75 0.0016 31.1 4.7 48 125-172 42-89 (305)
166 PF15290 Syntaphilin: Golgi-lo 30.6 75 0.0016 30.4 4.3 66 330-397 61-134 (305)
167 PRK09352 3-oxoacyl-(acyl carri 29.8 1.2E+02 0.0026 29.4 6.0 47 127-176 213-259 (319)
168 COG5418 Predicted secreted pro 29.6 1E+02 0.0022 26.6 4.5 69 88-160 30-104 (164)
169 TIGR00747 fabH 3-oxoacyl-(acyl 29.2 1.2E+02 0.0027 29.4 5.9 48 127-177 213-260 (318)
170 PTZ00340 O-sialoglycoprotein e 29.0 94 0.002 31.1 5.0 47 126-172 44-90 (345)
171 PF03630 Fumble: Fumble ; Int 28.7 1.8E+02 0.004 29.0 6.9 48 151-198 286-339 (341)
172 TIGR01319 glmL_fam conserved h 28.7 41 0.00088 34.8 2.4 32 143-174 380-414 (463)
173 PRK07204 3-oxoacyl-(acyl carri 28.5 1.3E+02 0.0028 29.5 5.9 46 129-177 226-271 (329)
174 cd00830 KAS_III Ketoacyl-acyl 28.4 1.2E+02 0.0026 29.3 5.7 47 128-177 218-264 (320)
175 PF11593 Med3: Mediator comple 28.4 75 0.0016 31.7 4.0 22 386-407 64-85 (379)
176 PLN02920 pantothenate kinase 1 28.3 1.7E+02 0.0037 29.7 6.6 49 151-199 296-350 (398)
177 TIGR00067 glut_race glutamate 28.2 1.2E+02 0.0027 28.7 5.5 41 152-196 172-212 (251)
178 PRK06840 hypothetical protein; 28.1 1.1E+02 0.0025 30.0 5.5 46 132-177 54-102 (339)
179 COG1548 Predicted transcriptio 28.0 26 0.00057 33.3 0.8 21 24-44 128-148 (330)
180 PF11458 Mistic: Membrane-inte 27.9 33 0.00071 25.8 1.1 22 354-375 2-23 (84)
181 TIGR03723 bact_gcp putative gl 27.8 88 0.0019 30.7 4.6 68 126-193 44-115 (314)
182 TIGR00114 lumazine-synth 6,7-d 27.1 55 0.0012 28.1 2.6 61 129-199 12-72 (138)
183 PF00814 Peptidase_M22: Glycop 27.0 62 0.0013 31.0 3.2 68 128-195 26-97 (268)
184 PF12401 DUF3662: Protein of u 27.0 3E+02 0.0066 22.6 6.9 66 79-152 27-95 (116)
185 PRK09185 3-oxoacyl-(acyl carri 26.7 1.2E+02 0.0026 30.7 5.5 46 134-179 261-308 (392)
186 TIGR03150 fabF beta-ketoacyl-a 26.1 1.2E+02 0.0025 30.7 5.3 45 134-178 276-322 (407)
187 TIGR00016 ackA acetate kinase. 25.7 2E+02 0.0043 29.4 6.6 45 129-176 307-352 (404)
188 PRK11546 zraP zinc resistance 25.7 4.4E+02 0.0095 22.8 8.3 61 330-396 42-105 (143)
189 PLN02404 6,7-dimethyl-8-ribity 25.4 71 0.0015 27.5 2.9 61 130-200 20-80 (141)
190 KOG3570 MAPK-activating protei 25.1 46 0.001 36.9 2.1 19 395-413 97-115 (1588)
191 PRK14691 3-oxoacyl-(acyl carri 24.9 1.2E+02 0.0026 30.2 5.0 48 131-178 204-253 (342)
192 PLN02405 hexokinase 24.7 1.9E+02 0.0041 30.5 6.5 26 23-48 92-117 (497)
193 PRK05952 3-oxoacyl-(acyl carri 24.6 1.1E+02 0.0025 30.9 4.8 46 133-178 254-301 (381)
194 COG4020 Uncharacterized protei 24.6 4.1E+02 0.0089 25.4 7.9 51 150-203 266-319 (332)
195 cd00529 RuvC_resolvase Hollida 24.4 1.9E+02 0.0042 25.0 5.6 145 27-199 1-150 (154)
196 PRK09604 UGMP family protein; 24.0 1.4E+02 0.0031 29.5 5.3 46 128-173 48-93 (332)
197 KOG2872 Uroporphyrinogen decar 24.0 1.6E+02 0.0035 28.6 5.2 44 118-163 219-262 (359)
198 PLN02932 3-ketoacyl-CoA syntha 23.9 1.8E+02 0.0039 30.5 6.2 56 122-177 139-195 (478)
199 COG4012 Uncharacterized protei 23.2 71 0.0015 30.5 2.7 19 27-45 2-20 (342)
200 COG2441 Predicted butyrate kin 22.9 2.1E+02 0.0045 27.8 5.7 54 151-204 272-335 (374)
201 PRK09258 3-oxoacyl-(acyl carri 22.5 1.7E+02 0.0037 28.6 5.6 48 126-176 232-279 (338)
202 CHL00203 fabH 3-oxoacyl-acyl-c 22.3 2E+02 0.0043 28.1 6.0 44 130-176 223-266 (326)
203 PRK06065 acetyl-CoA acetyltran 22.2 1.8E+02 0.0039 29.6 5.7 45 133-178 31-79 (392)
204 PRK07058 acetate kinase; Provi 21.8 2.6E+02 0.0056 28.5 6.5 45 128-176 298-343 (396)
205 PRK09605 bifunctional UGMP fam 21.7 1.5E+02 0.0033 31.4 5.3 46 127-172 44-89 (535)
206 PRK07910 3-oxoacyl-(acyl carri 21.7 1.7E+02 0.0037 30.0 5.5 45 134-178 287-333 (418)
207 cd00825 decarbox_cond_enzymes 20.8 3.1E+02 0.0067 26.5 7.0 26 133-158 13-42 (332)
208 KOG1794 N-Acetylglucosamine ki 20.7 2.7E+02 0.0057 27.2 6.0 78 125-202 234-317 (336)
209 COG4819 EutA Ethanolamine util 20.7 76 0.0017 31.4 2.4 20 25-44 144-163 (473)
210 TIGR03286 methan_mark_15 putat 20.6 1.8E+02 0.0038 29.8 5.1 59 132-199 178-236 (404)
211 PF00195 Chal_sti_synt_N: Chal 20.3 2E+02 0.0044 26.9 5.1 53 125-177 94-147 (226)
212 PRK05963 3-oxoacyl-(acyl carri 20.1 2.3E+02 0.005 27.6 5.9 47 127-176 221-267 (326)
213 PF02685 Glucokinase: Glucokin 20.0 1.4E+02 0.0031 29.4 4.3 37 29-65 1-48 (316)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-90 Score=657.66 Aligned_cols=403 Identities=63% Similarity=1.005 Sum_probs=388.7
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
+||||||||||++|++++.. .++++||||+||||||||++.+++|+|+|+ |||+++++||.+-|++
T Consensus 203 ~RIiNePTaAAIAYGLDKk~---gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykk 279 (663)
T KOG0100|consen 203 VRIINEPTAAAIAYGLDKKD---GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKK 279 (663)
T ss_pred EEeecCccHHHHHhcccccC---CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHHHHHHhh
Confidence 58999999999999999886 578999999999999999999999999998 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKID 149 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~ 149 (443)
+++.|++.+.+++++|+++||+||+.||+..++.|.|+++++|.||+-++||+.||++..++|.+++.++.++|+++++.
T Consensus 280 K~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lk 359 (663)
T KOG0100|consen 280 KHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLK 359 (663)
T ss_pred hcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccceEeec
Q 043979 150 KSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGIETAG 229 (443)
Q Consensus 150 ~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~ 229 (443)
+.+||.|+|||||+|||.||++|+++|+|+++++.+|||||||+|||.+|..+||. ....++++.|++|.++||++.+
T Consensus 360 KsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~pLtlGIETvG 437 (663)
T KOG0100|consen 360 KSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNPLTLGIETVG 437 (663)
T ss_pred cccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeeccccceeeeec
Confidence 99999999999999999999999999999999999999999999999999999974 5578999999999999999999
Q ss_pred CeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCCceEE
Q 043979 230 GVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDANGILH 309 (443)
Q Consensus 230 ~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~ 309 (443)
|.|..+||||+.||++++..|++..|+|+.+.|++|+|++.+..+|+.||+|.|.||||+|+|.|+|+|+|++|.||+|+
T Consensus 438 GVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~ 517 (663)
T KOG0100|consen 438 GVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQ 517 (663)
T ss_pred ceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccCeeeeEEEecCCCCCCHHHHHHHH-----------------------------Hhhcccc-hhhhCCCChHH
Q 043979 310 VSAKDMTVGVKNHITITNDKGRLSKEEIERMV-----------------------------MRNTVRD-EKFAGKLDPAD 359 (443)
Q Consensus 310 v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~-----------------------------~r~~l~~-~~~~~~~~~~e 359 (443)
|++.++.+|++.+|+|+|+.++||+|+|++|+ |++.+.+ +++..++++++
T Consensus 518 VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~ed 597 (663)
T KOG0100|consen 518 VSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDED 597 (663)
T ss_pred EEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhH
Confidence 99999999999999999999999999999998 3444432 56888999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHccCC
Q 043979 360 KQKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYEGSA 408 (443)
Q Consensus 360 ~~~l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~ 408 (443)
++.+..++++..+||++|++++.++|++++++|+..++||..+.+..++
T Consensus 598 Ke~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag 646 (663)
T KOG0100|consen 598 KETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAG 646 (663)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999999999999999999998764
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=4.3e-82 Score=675.25 Aligned_cols=440 Identities=70% Similarity=1.069 Sum_probs=404.9
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|+..+.. ..+.++|||||||||||+||+++.++.++|+ |||.+|++|+.++|..
T Consensus 171 ~~li~EptAAAl~y~~~~~~--~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~ 248 (653)
T PTZ00009 171 LRIINEPTAAAIAYGLDKKG--DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKR 248 (653)
T ss_pred eEEecchHHHHHHHhhhccC--CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHH
Confidence 47999999999999986543 2467899999999999999999999988887 9999999999999988
Q ss_pred hc-cCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043979 70 KH-KIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKI 148 (443)
Q Consensus 70 ~~-~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~ 148 (443)
++ +.++..+++++.+|+.+||++|+.||.+.++.+.+++++++.+++++|||++|+++|+|+++++..+|+++|+++++
T Consensus 249 ~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~ 328 (653)
T PTZ00009 249 KNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGM 328 (653)
T ss_pred hccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77 46788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccceEee
Q 043979 149 DKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGIETA 228 (443)
Q Consensus 149 ~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~ 228 (443)
++.+|+.|+||||+||||+||++|+++|++.++..++|||+|||+|||++|+++++...++++++.+.|++|++||++..
T Consensus 329 ~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~ 408 (653)
T PTZ00009 329 DKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETA 408 (653)
T ss_pred CHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccccCcccc
Confidence 99999999999999999999999999997778889999999999999999999996545678899999999999999999
Q ss_pred cCeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCCceE
Q 043979 229 GGVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDANGIL 308 (443)
Q Consensus 229 ~~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~g~l 308 (443)
++.+.+|||+|+++|++++.+|++..|+|+.+.|.||||++....+|..||+|.|.++|+.+.|.++|+|+|++|.||+|
T Consensus 409 ~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil 488 (653)
T PTZ00009 409 GGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGIL 488 (653)
T ss_pred CCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999988999999999999999999998889999999999999
Q ss_pred EEEEeeeccCeeeeEEEecCCCCCCHHHHHHHH-----------------------------HhhcccchhhhCCCChHH
Q 043979 309 HVSAKDMTVGVKNHITITNDKGRLSKEEIERMV-----------------------------MRNTVRDEKFAGKLDPAD 359 (443)
Q Consensus 309 ~v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~-----------------------------~r~~l~~~~~~~~~~~~e 359 (443)
+|++.+..+|++..+++.+...+|+++++++++ +|+.|+++.+..++++++
T Consensus 489 ~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee 568 (653)
T PTZ00009 489 NVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSD 568 (653)
T ss_pred EEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHH
Confidence 999999999999999888766779999988765 455554344778999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCC
Q 043979 360 KQKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYEGSASGDVPMGSSAEMPGGGHGKAET-G-GAGGGP 437 (443)
Q Consensus 360 ~~~l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 437 (443)
++++.+.++++++||+++.+++.++|++|+++|++.++||..|++.+++ |++|+|++++||||-||+|++ | |+++||
T Consensus 569 ~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (653)
T PTZ00009 569 KATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAG-GGMPGGMPGGMPGGMPGGAGPAGAGASSGP 647 (653)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999888889999999999999999999999998787 889999999999888765444 4 677799
Q ss_pred CcccCC
Q 043979 438 KIEEVD 443 (443)
Q Consensus 438 ~~~~~~ 443 (443)
||||||
T Consensus 648 ~~~~~~ 653 (653)
T PTZ00009 648 TVEEVD 653 (653)
T ss_pred ccccCC
Confidence 999998
No 3
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-73 Score=578.11 Aligned_cols=404 Identities=72% Similarity=1.088 Sum_probs=382.0
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
||+|+||+||||+|++.+.. ....+++|+|+||||||||++.+.++.+.|. |||+.|++|+..+|++
T Consensus 174 lrii~EPtAaalAygl~k~~--~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~ 251 (620)
T KOG0101|consen 174 LRIINEPTAAALAYGLDKKV--LGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKR 251 (620)
T ss_pred eeeecchHHHHHHhhccccc--cceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHHHHHHHHH
Confidence 68999999999999987763 5678899999999999999999999977776 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKID 149 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~ 149 (443)
+++.++..++++++||+.+||.+|+.||...++++.+++|++|.++...|||.+|+.++.+++.++..++.++|+++.++
T Consensus 252 k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~d 331 (620)
T KOG0101|consen 252 KAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLD 331 (620)
T ss_pred hhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccceEeec
Q 043979 150 KSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGIETAG 229 (443)
Q Consensus 150 ~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~ 229 (443)
+.+|+.|+|||||||+|.+|..++++|+++.+..++||||+||+|||++|+.++|.......++.+.|+.|.++||++.+
T Consensus 332 k~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~gve~a~ 411 (620)
T KOG0101|consen 332 KSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAG 411 (620)
T ss_pred ccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccccccccccC
Confidence 99999999999999999999999999998999999999999999999999999987666678999999999999999999
Q ss_pred CeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCCceEE
Q 043979 230 GVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDANGILH 309 (443)
Q Consensus 230 ~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~ 309 (443)
+.|.++|++|+.+|++++.+|++..|+|+.+.|.||+|++..+++|..+|.|.|.|+||+|+|.++|+++|.+|.||+|.
T Consensus 412 ~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD~ngiL~ 491 (620)
T KOG0101|consen 412 GVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILN 491 (620)
T ss_pred CcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccCeeeeEEEecCCCCCCHHHHHHHH------------------Hhhcccch---------hhhCCCChHHHHH
Q 043979 310 VSAKDMTVGVKNHITITNDKGRLSKEEIERMV------------------MRNTVRDE---------KFAGKLDPADKQK 362 (443)
Q Consensus 310 v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~------------------~r~~l~~~---------~~~~~~~~~e~~~ 362 (443)
|++.+..||+...++|+++.++||+++|++|. .++.|++. .-...++++++.+
T Consensus 492 Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~~~i~~~~~~~ 571 (620)
T KOG0101|consen 492 VTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEKGKINEEDKQK 571 (620)
T ss_pred EeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhccccChhhhhh
Confidence 99999999999999999999999999999987 23333221 1116889999999
Q ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHcc
Q 043979 363 IEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYEG 406 (443)
Q Consensus 363 l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~ 406 (443)
+...++++..||+.++.+.+++|++|.++|+..+.||+.+++.+
T Consensus 572 ~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 572 ILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 99999999999999988889999999999999999999998774
No 4
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1e-70 Score=583.62 Aligned_cols=396 Identities=43% Similarity=0.734 Sum_probs=359.7
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|+..... +.++||||+|||||||||+++.++.++|+ |||.+|++|+.++|..
T Consensus 191 ~rlInEPtAAAlayg~~~~~----~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~ 266 (657)
T PTZ00186 191 IRVVNEPTAAALAYGMDKTK----DSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRK 266 (657)
T ss_pred EEEEcChHHHHHHHhccCCC----CCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhh
Confidence 47999999999999986543 68999999999999999999999999987 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCC----ceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEG----IDFYATITRARFEVLNMDLFRKCMEHVEKCLRN 145 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~----~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~ 145 (443)
+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+..+ .++.++|||++|+++|+|+++++..+++++|++
T Consensus 267 ~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~ 346 (657)
T PTZ00186 267 TSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKD 346 (657)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998899999999999999999999999999988866432 468899999999999999999999999999999
Q ss_pred cCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccce
Q 043979 146 SKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGI 225 (443)
Q Consensus 146 a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi 225 (443)
+++++.+|+.|+||||+||||.||++|+++|+ .++...+|||+|||+|||++|+++++. ++++.+.|++|++||+
T Consensus 347 a~~~~~dId~VvLVGGssriP~V~~~l~~~fg-~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgi 421 (657)
T PTZ00186 347 AGVELKEINDVVLVGGMTRMPKVVEEVKKFFQ-KDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGI 421 (657)
T ss_pred cCCChhhCCEEEEECCcccChHHHHHHHHHhC-CCccccCCCchHHHHhHHHHHHHhccc----cCceEEEeeccccccc
Confidence 99999999999999999999999999999994 667789999999999999999999863 5789999999999999
Q ss_pred EeecCeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCC
Q 043979 226 ETAGGVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDAN 305 (443)
Q Consensus 226 ~~~~~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~ 305 (443)
++.++.+.+|||||++||++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.|+|+.++|.++|+|+|++|.|
T Consensus 422 e~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~n 501 (657)
T PTZ00186 422 ETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDAN 501 (657)
T ss_pred eecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeeeccCeeeeEEEecCCCCCCHHHHHHHH------------------Hhhcccc-----hh-hh--CCCChHH
Q 043979 306 GILHVSAKDMTVGVKNHITITNDKGRLSKEEIERMV------------------MRNTVRD-----EK-FA--GKLDPAD 359 (443)
Q Consensus 306 g~l~v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~------------------~r~~l~~-----~~-~~--~~~~~~e 359 (443)
|+|+|++.+..||++.+++|++. ..|+++|+++|+ .++..+. ++ +. ..+++++
T Consensus 502 GiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (657)
T PTZ00186 502 GICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEWKYVSDAE 580 (657)
T ss_pred CEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 99999999999999999999864 459999999987 1111110 11 21 2679999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHccC
Q 043979 360 KQKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYEGS 407 (443)
Q Consensus 360 ~~~l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~ 407 (443)
++.+.+.+..+++||..+ +.+.+.+++++++|++.+.++..+++.++
T Consensus 581 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 627 (657)
T PTZ00186 581 KENVKTLVAELRKAMENP-NVAKDDLAAATDKLQKAVMECGRTEYQQA 627 (657)
T ss_pred HHHHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999843 44679999999999999999998876644
No 5
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.7e-69 Score=576.82 Aligned_cols=397 Identities=48% Similarity=0.765 Sum_probs=362.5
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|+..... +.++|||||||||||+||+++.++.++|+ |||+.|++|+.++|..
T Consensus 203 ~~li~EPtAAAlayg~~~~~----~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~ 278 (673)
T PLN03184 203 LRIINEPTAASLAYGFEKKS----NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKK 278 (673)
T ss_pred EEEeCcHHHHHHHhhcccCC----CCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHh
Confidence 47999999999999987643 67999999999999999999999998887 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccC----CceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYE----GIDFYATITRARFEVLNMDLFRKCMEHVEKCLRN 145 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~----~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~ 145 (443)
+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+.. +.++.++|||++|+++|+|+++++..+|+++|++
T Consensus 279 ~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~ 358 (673)
T PLN03184 279 DEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRD 358 (673)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999898899999999999999999999999999998876542 3578999999999999999999999999999999
Q ss_pred cCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccce
Q 043979 146 SKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGI 225 (443)
Q Consensus 146 a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi 225 (443)
+++++.+|+.|+||||+||||.||++|+++| +..+..++|||+|||+|||++|+++++. ++++.+.|++|++||+
T Consensus 359 a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~dv~p~slgi 433 (673)
T PLN03184 359 AKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLLDVTPLSLGL 433 (673)
T ss_pred cCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEEecccccceE
Confidence 9999999999999999999999999999999 5678889999999999999999999852 6789999999999999
Q ss_pred EeecCeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCC
Q 043979 226 ETAGGVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDAN 305 (443)
Q Consensus 226 ~~~~~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~ 305 (443)
++.++.+.+|||+|+++|++++.+|++..|+|+.+.|.||||++....+|..||+|.|+++|+.+.|.++|+|+|.+|.|
T Consensus 434 ~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~ 513 (673)
T PLN03184 434 ETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDAN 513 (673)
T ss_pred EecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ceEEEEEeeeccCeeeeEEEecCCCCCCHHHHHHHH------------------Hhhcccc---------hhhhCCCChH
Q 043979 306 GILHVSAKDMTVGVKNHITITNDKGRLSKEEIERMV------------------MRNTVRD---------EKFAGKLDPA 358 (443)
Q Consensus 306 g~l~v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~------------------~r~~l~~---------~~~~~~~~~~ 358 (443)
|+|+|++.+..++++..++++.. .+||+++++++. .||.++. ..+..+++++
T Consensus 514 GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~e 592 (673)
T PLN03184 514 GILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPAD 592 (673)
T ss_pred CeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHH
Confidence 99999999999999999988754 569999998876 2222221 1255688999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHccCCCC
Q 043979 359 DKQKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYEGSASG 410 (443)
Q Consensus 359 e~~~l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~~~ 410 (443)
+++++.+.++++++||+++ +.+.+++++++|.+.+.++..+++.++|+|
T Consensus 593 er~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~ 641 (673)
T PLN03184 593 VKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPGAG 641 (673)
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999976 678999999999999999999988877644
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.4e-69 Score=578.43 Aligned_cols=399 Identities=48% Similarity=0.745 Sum_probs=365.3
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|++.+.. .+.++||||||||||||||+++.++.++|+ |||.+|++|+.++|..
T Consensus 164 ~~li~EPtAAAl~y~~~~~~---~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~ 240 (653)
T PRK13411 164 LRIINEPTAAALAYGLDKQD---QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQ 240 (653)
T ss_pred EEEecchHHHHHHhcccccC---CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHH
Confidence 47999999999999986543 467899999999999999999999999887 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccC----CceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYE----GIDFYATITRARFEVLNMDLFRKCMEHVEKCLRN 145 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~----~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~ 145 (443)
+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+.. +.++.+.|||++|+++|+|+++++..+|+++|++
T Consensus 241 ~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 320 (653)
T PRK13411 241 QEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKD 320 (653)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998899899999999999999999999999999998887643 3578999999999999999999999999999999
Q ss_pred cCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccce
Q 043979 146 SKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGI 225 (443)
Q Consensus 146 a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi 225 (443)
+++.+.+|+.|+||||+||||+||+.|+++|++.++..++|||+|||+|||++|+++++. ++++.+.|++|++||+
T Consensus 321 a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi 396 (653)
T PRK13411 321 AGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGI 396 (653)
T ss_pred cCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeecccceeeE
Confidence 999999999999999999999999999999977788899999999999999999999853 6789999999999999
Q ss_pred EeecCeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCC
Q 043979 226 ETAGGVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDAN 305 (443)
Q Consensus 226 ~~~~~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~ 305 (443)
++.++.|.+|||||+++|++++.+|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|+++.|.++|+|+|++|.|
T Consensus 397 ~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 476 (653)
T PRK13411 397 ETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVN 476 (653)
T ss_pred EecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ceEEEEEeeeccCeeeeEEEecCCCCCCHHHHHHHH------------------Hhhcccc---------hhhhCCCChH
Q 043979 306 GILHVSAKDMTVGVKNHITITNDKGRLSKEEIERMV------------------MRNTVRD---------EKFAGKLDPA 358 (443)
Q Consensus 306 g~l~v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~------------------~r~~l~~---------~~~~~~~~~~ 358 (443)
|+|+|++.+..+|++..+.+.+. ..||++|+++++ .||.++. +.+...++++
T Consensus 477 Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~ 555 (653)
T PRK13411 477 GILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEE 555 (653)
T ss_pred CeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 99999999999999988888764 569999998887 2333321 1245789999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHccCC
Q 043979 359 DKQKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYEGSA 408 (443)
Q Consensus 359 e~~~l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~ 408 (443)
+|+++.+.++++++||+++ +++.++|++++++|++.+.++..+++++++
T Consensus 556 er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~~ 604 (653)
T PRK13411 556 LKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQGG 604 (653)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999984 468999999999999999999999987553
No 7
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.9e-69 Score=573.89 Aligned_cols=395 Identities=45% Similarity=0.728 Sum_probs=362.9
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|+..+.. +.++||||+|||||||||+++.++.++|+ |||.+|++|+.++|..
T Consensus 166 ~~li~EPtAAAlayg~~~~~----~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~ 241 (668)
T PRK13410 166 ERILNEPTAAALAYGLDRSS----SQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLE 241 (668)
T ss_pred EEEecchHHHHHHhccccCC----CCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHh
Confidence 47999999999999987643 68999999999999999999999999887 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCC----ceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEG----IDFYATITRARFEVLNMDLFRKCMEHVEKCLRN 145 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~----~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~ 145 (443)
+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++..+|||++|+++|+++++++..+|+++|++
T Consensus 242 ~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ 321 (668)
T PRK13410 242 KEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKD 321 (668)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998899999999999999999999999999999876543 478899999999999999999999999999999
Q ss_pred cCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccce
Q 043979 146 SKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGI 225 (443)
Q Consensus 146 a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi 225 (443)
+++++.+|+.|+||||+||||+|+++|+++| +.++..++||++|||+|||++|+++++. ++++.+.|++|++||+
T Consensus 322 ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~Dv~p~slgi 396 (668)
T PRK13410 322 AGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGL 396 (668)
T ss_pred cCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEeeccccccc
Confidence 9999999999999999999999999999999 4778899999999999999999999853 6789999999999999
Q ss_pred EeecCeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCC
Q 043979 226 ETAGGVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDAN 305 (443)
Q Consensus 226 ~~~~~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~ 305 (443)
++.+|.+.+|||+|+++|++++.+|++..|+|+.+.|.||||++....+|..||+|.|+|+|+++.|.++|+|+|++|.|
T Consensus 397 e~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~n 476 (668)
T PRK13410 397 ETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDAN 476 (668)
T ss_pred eecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeeeccCeeeeEEEecCCCCCCHHHHHHHH-----------------------------Hhhcccc--hhhhCC
Q 043979 306 GILHVSAKDMTVGVKNHITITNDKGRLSKEEIERMV-----------------------------MRNTVRD--EKFAGK 354 (443)
Q Consensus 306 g~l~v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~-----------------------------~r~~l~~--~~~~~~ 354 (443)
|+|+|++.+..||++..+++... .+|+++|+++++ +|+.|.+ ..+..+
T Consensus 477 GiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~ 555 (668)
T PRK13410 477 GILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPY 555 (668)
T ss_pred cEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 99999999999999988888754 569999999876 3444532 246678
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCC-CcCHHHHHHHHHHHHHhHHHHHHHHHc
Q 043979 355 LDPADKQKIEKAIDEAIEWLDGNQ-LAEVDELEDKLKELEGLCYPIIVKMYE 405 (443)
Q Consensus 355 ~~~~e~~~l~~~~~~~~~Wl~~~~-~a~~~~~~~kl~~L~~~~~~i~~R~~e 405 (443)
+++++|+++...++++++||+++. ....+.|.++++.|..+..++..|+.|
T Consensus 556 ~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 556 FAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999873 456677888889999999999999999
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.1e-68 Score=568.11 Aligned_cols=395 Identities=52% Similarity=0.821 Sum_probs=362.0
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|+..+. .+.++|||||||||||+|++++.++.++|+ |||.+|++|+.++|..
T Consensus 164 ~~li~EptAAAl~y~~~~~----~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 239 (627)
T PRK00290 164 LRIINEPTAAALAYGLDKK----GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKK 239 (627)
T ss_pred EEEecchHHHHHHhhhccC----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHH
Confidence 4799999999999998663 368999999999999999999999988887 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCC----ceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEG----IDFYATITRARFEVLNMDLFRKCMEHVEKCLRN 145 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~----~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~ 145 (443)
+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+..+ .++.++|||++|+++|+|+++++..+|+++|++
T Consensus 240 ~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~ 319 (627)
T PRK00290 240 ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKD 319 (627)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998998899999999999999999999999999998876542 678999999999999999999999999999999
Q ss_pred cCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccce
Q 043979 146 SKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGI 225 (443)
Q Consensus 146 a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi 225 (443)
+++++.+|+.|+||||+||||+|++.|++.| +.++..++||++|||+|||++|+.+++. ++++.+.|++|++||+
T Consensus 320 a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d~~~~slgi 394 (627)
T PRK00290 320 AGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGI 394 (627)
T ss_pred cCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeeeccceEEEE
Confidence 9999999999999999999999999999999 5778899999999999999999999853 6789999999999999
Q ss_pred EeecCeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCC
Q 043979 226 ETAGGVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDAN 305 (443)
Q Consensus 226 ~~~~~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~ 305 (443)
++.++.+.+|||+|+++|++++.+|++..|+|+.+.|.+|+|++....+|..||+|.|+++|+.+.|.++|+|+|.+|.|
T Consensus 395 ~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~ 474 (627)
T PRK00290 395 ETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDAN 474 (627)
T ss_pred EecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ceEEEEEeeeccCeeeeEEEecCCCCCCHHHHHHHH------------------Hhhcccc---------hhhhCCCChH
Q 043979 306 GILHVSAKDMTVGVKNHITITNDKGRLSKEEIERMV------------------MRNTVRD---------EKFAGKLDPA 358 (443)
Q Consensus 306 g~l~v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~------------------~r~~l~~---------~~~~~~~~~~ 358 (443)
|+|+|++.+..+|+..++++.+. .+|+++++++++ .||.++. +.+...++++
T Consensus 475 gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~ 553 (627)
T PRK00290 475 GIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPAD 553 (627)
T ss_pred ceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 99999999999999999888754 469999998876 2222221 1255788999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHccCC
Q 043979 359 DKQKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYEGSA 408 (443)
Q Consensus 359 e~~~l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~ 408 (443)
+++++.+.++++++||+++ +.++|++++++|+++++++..|++++++
T Consensus 554 e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~~~ 600 (627)
T PRK00290 554 EKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQAQ 600 (627)
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999976 7789999999999999999999877543
No 9
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=3.8e-68 Score=567.75 Aligned_cols=395 Identities=49% Similarity=0.806 Sum_probs=361.2
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|+.... .+.++|||||||||||+||+++.++.++|+ |||.+|++|+.++|.+
T Consensus 205 ~~li~EptAAAlay~~~~~----~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~ 280 (663)
T PTZ00400 205 LRIINEPTAAALAFGMDKN----DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKK 280 (663)
T ss_pred EEEeCchHHHHHHhccccC----CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhh
Confidence 4799999999999998654 378999999999999999999999999886 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCC----ceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEG----IDFYATITRARFEVLNMDLFRKCMEHVEKCLRN 145 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~----~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~ 145 (443)
+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.++|||++|+++|+|+++++..+|+++|++
T Consensus 281 ~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~ 360 (663)
T PTZ00400 281 QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKD 360 (663)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998998999999999999999999999999988888866543 578999999999999999999999999999999
Q ss_pred cCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccce
Q 043979 146 SKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGI 225 (443)
Q Consensus 146 a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi 225 (443)
+++.+.+|+.|+||||+||+|+||++|+++|+ .++..++|||+|||+|||++|+++++. .+++.+.|++|++||+
T Consensus 361 a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~-~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi 435 (663)
T PTZ00400 361 AGVKKDELNDVILVGGMTRMPKVSETVKKIFG-KEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGI 435 (663)
T ss_pred cCCCHHHCcEEEEECCccCChHHHHHHHHHhC-CCcccCCCCccceeeccHHHHHhhcCC----ccceEEEeccccceEE
Confidence 99999999999999999999999999999994 678889999999999999999999853 5789999999999999
Q ss_pred EeecCeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCC
Q 043979 226 ETAGGVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDAN 305 (443)
Q Consensus 226 ~~~~~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~ 305 (443)
++.++.+.++||+|+++|++++.+|++..|+|+.+.|.||+|++..+.+|..||+|.|.++|+.+.|.++|+|+|.+|.|
T Consensus 436 ~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~ 515 (663)
T PTZ00400 436 ETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDAN 515 (663)
T ss_pred EecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ceEEEEEeeeccCeeeeEEEecCCCCCCHHHHHHHH------------------Hhhcccc---------hhhhCCCChH
Q 043979 306 GILHVSAKDMTVGVKNHITITNDKGRLSKEEIERMV------------------MRNTVRD---------EKFAGKLDPA 358 (443)
Q Consensus 306 g~l~v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~------------------~r~~l~~---------~~~~~~~~~~ 358 (443)
|+|+|++.+..+|++..++++.. .+||+++++++. .||.++. ..+...++++
T Consensus 516 Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ 594 (663)
T PTZ00400 516 GIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDA 594 (663)
T ss_pred CCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHH
Confidence 99999999999999999988764 469999998876 2332321 1256789999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHccCC
Q 043979 359 DKQKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYEGSA 408 (443)
Q Consensus 359 e~~~l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~ 408 (443)
+++.+.+.++++++||+++ +.++|++++++|++.+.++..+++.+++
T Consensus 595 ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~~ 641 (663)
T PTZ00400 595 DKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQGN 641 (663)
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999976 6789999999999999999998876553
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=3.1e-67 Score=558.92 Aligned_cols=392 Identities=52% Similarity=0.801 Sum_probs=359.4
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|+..... +.++|||||||||||+||+++.++.++|+ |||..|++|+.++|.+
T Consensus 166 ~~li~EptAAAlay~~~~~~----~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 241 (621)
T CHL00094 166 LRIINEPTAASLAYGLDKKN----NETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKK 241 (621)
T ss_pred EEEeccHHHHHHHhccccCC----CCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHH
Confidence 47999999999999976543 67899999999999999999999988887 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccC----CceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYE----GIDFYATITRARFEVLNMDLFRKCMEHVEKCLRN 145 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~----~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~ 145 (443)
+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+.. +.++...|||++||++++|+++++..+|+++|++
T Consensus 242 ~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 321 (621)
T CHL00094 242 KEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKD 321 (621)
T ss_pred HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999889999999999999999999999999998887653 2578899999999999999999999999999999
Q ss_pred cCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccce
Q 043979 146 SKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGI 225 (443)
Q Consensus 146 a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi 225 (443)
+++++.+|+.|+||||+||||.|++.|+++|+ .++..++||++|||+|||++|+++++. .+++.+.|++|++||+
T Consensus 322 a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d~~~~~lgi 396 (621)
T CHL00094 322 AKLDKSDIDEVVLVGGSTRIPAIQELVKKLLG-KKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGV 396 (621)
T ss_pred cCCChhhCcEEEEECCccCChHHHHHHHHHhC-CCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeeeeeceeeee
Confidence 99999999999999999999999999999994 678889999999999999999999853 5789999999999999
Q ss_pred EeecCeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCC
Q 043979 226 ETAGGVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDAN 305 (443)
Q Consensus 226 ~~~~~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~ 305 (443)
++.++.+.+|||+|+++|++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|+++|+.+.|.++|+|+|++|.|
T Consensus 397 ~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~ 476 (621)
T CHL00094 397 ETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDAN 476 (621)
T ss_pred eccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ceEEEEEeeeccCeeeeEEEecCCCCCCHHHHHHHH-----------------------------HhhcccchhhhCCCC
Q 043979 306 GILHVSAKDMTVGVKNHITITNDKGRLSKEEIERMV-----------------------------MRNTVRDEKFAGKLD 356 (443)
Q Consensus 306 g~l~v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~-----------------------------~r~~l~~~~~~~~~~ 356 (443)
|+|+|++.+..+|++..+.+.+ ..+|+++++++++ +|+.++ .+...++
T Consensus 477 Gil~v~~~~~~t~~~~~~~i~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~--~~~~~~~ 553 (621)
T CHL00094 477 GILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK--ELKDKIS 553 (621)
T ss_pred CeEEEEEeeccCCceeeeeecc-chhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH--HHhccCC
Confidence 9999999999999998888874 3469999998876 233332 2556889
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHccC
Q 043979 357 PADKQKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYEGS 407 (443)
Q Consensus 357 ~~e~~~l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~ 407 (443)
+++|+++.+.++++++||+++ +.+++++++++|++.++++..+++.++
T Consensus 554 ~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~~~ 601 (621)
T CHL00094 554 EEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYSST 601 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999976 568999999999999999999887743
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.3e-66 Score=553.60 Aligned_cols=390 Identities=54% Similarity=0.828 Sum_probs=358.2
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|+..+.. .+.++|||||||||||+||+++.++.++|+ |||+.|++|+.++|.+
T Consensus 161 ~~li~EptAAAl~y~~~~~~---~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~ 237 (595)
T TIGR02350 161 LRIINEPTAAALAYGLDKSK---KDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 (595)
T ss_pred EEEecchHHHHHHHhhcccC---CCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHH
Confidence 47999999999999987632 478999999999999999999999988886 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccC----CceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYE----GIDFYATITRARFEVLNMDLFRKCMEHVEKCLRN 145 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~----~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~ 145 (443)
+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+.. +.++.++|||++|+++++|+++++..+|+++|++
T Consensus 238 ~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~ 317 (595)
T TIGR02350 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKD 317 (595)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999899889999999999999999999999999998887653 3578899999999999999999999999999999
Q ss_pred cCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccce
Q 043979 146 SKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGI 225 (443)
Q Consensus 146 a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi 225 (443)
+++++.+|+.|+||||+||||+|++.|+++|+ .++..++||++|||+|||++|+.+++. ++++.+.|++|++||+
T Consensus 318 a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~~igi 392 (595)
T TIGR02350 318 AGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGI 392 (595)
T ss_pred cCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeecccceeEE
Confidence 99999999999999999999999999999995 778899999999999999999999853 6789999999999999
Q ss_pred EeecCeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCC
Q 043979 226 ETAGGVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDAN 305 (443)
Q Consensus 226 ~~~~~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~ 305 (443)
++.++.+.+|||+|+++|++++.+|++..|+|+.+.|.+|+|++..+.+|..||+|.|+++|+.+.|.++|+++|++|.|
T Consensus 393 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~ 472 (595)
T TIGR02350 393 ETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDAN 472 (595)
T ss_pred EecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ceEEEEEeeeccCeeeeEEEecCCCCCCHHHHHHHH-----------------------------HhhcccchhhhCCCC
Q 043979 306 GILHVSAKDMTVGVKNHITITNDKGRLSKEEIERMV-----------------------------MRNTVRDEKFAGKLD 356 (443)
Q Consensus 306 g~l~v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~-----------------------------~r~~l~~~~~~~~~~ 356 (443)
|+|+|++.+..+|++.+++++.. .+||+++++++. +|+.|+ .+...++
T Consensus 473 G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~--~~~~~~~ 549 (595)
T TIGR02350 473 GILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLK--EAGDKLP 549 (595)
T ss_pred CeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HhhccCC
Confidence 99999999999999998888764 469999998876 233332 1456889
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHH
Q 043979 357 PADKQKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMY 404 (443)
Q Consensus 357 ~~e~~~l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~ 404 (443)
+++++++.+.++++++||+++ +..+|++++++|++.++++..+++
T Consensus 550 ~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 550 AEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999986 778999999999999999997753
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=6.3e-66 Score=545.89 Aligned_cols=388 Identities=39% Similarity=0.646 Sum_probs=349.5
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|++.... +.++||||+|||||||||+++.++.++|+ |||.+|++|+.+++
T Consensus 160 ~~li~EPtAAAlay~~~~~~----~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~-- 233 (599)
T TIGR01991 160 LRLLNEPTAAAVAYGLDKAS----EGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQL-- 233 (599)
T ss_pred eEEecCHHHHHHHHhhccCC----CCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhh--
Confidence 47999999999999987643 68999999999999999999999988887 99999999999754
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKID 149 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~ 149 (443)
+.+...+++.+.+|+.+||++|+.||.+.++.+.++. +|.++.++|||++|+++|+|+++++..+|+++|++++++
T Consensus 234 --~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~ 309 (599)
T TIGR01991 234 --GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLS 309 (599)
T ss_pred --CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4555678899999999999999999999988888864 688999999999999999999999999999999999999
Q ss_pred cCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccceEeec
Q 043979 150 KSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGIETAG 229 (443)
Q Consensus 150 ~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~ 229 (443)
+.+|+.|+||||+||||+|+++|+++|+ ..+..++|||+|||+|||++|+.+++ .+..+++.+.|++|++||+++.+
T Consensus 310 ~~~id~ViLvGGssriP~V~~~l~~~f~-~~~~~~~npdeaVA~GAai~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~ 386 (599)
T TIGR01991 310 VEEIKGVVLVGGSTRMPLVRRAVAELFG-QEPLTDIDPDQVVALGAAIQADLLAG--NRIGNDLLLLDVTPLSLGIETMG 386 (599)
T ss_pred hhhCCEEEEECCcCCChHHHHHHHHHhC-CCCCCCCCCcHHHHHHHHHHHHHhcc--ccccCceEEEEeeeeeeEEEecC
Confidence 9999999999999999999999999994 66778899999999999999999984 44567899999999999999999
Q ss_pred CeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCCceEE
Q 043979 230 GVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDANGILH 309 (443)
Q Consensus 230 ~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~ 309 (443)
+.+.++||||+++|++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+
T Consensus 387 g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~ 466 (599)
T TIGR01991 387 GLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLT 466 (599)
T ss_pred CEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred EEEeeeccCeeeeEEEecCCCCCCHHHHHHHH------------------Hhhcccc------hh---hhCCCChHHHHH
Q 043979 310 VSAKDMTVGVKNHITITNDKGRLSKEEIERMV------------------MRNTVRD------EK---FAGKLDPADKQK 362 (443)
Q Consensus 310 v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~------------------~r~~l~~------~~---~~~~~~~~e~~~ 362 (443)
|++.+..||++..+.+.+. ..|+++++++++ .++.++. .. ....+++++|++
T Consensus 467 V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (599)
T TIGR01991 467 VSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAA 545 (599)
T ss_pred EEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 9999999999999888764 459999998876 1111111 11 224789999999
Q ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHc
Q 043979 363 IEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYE 405 (443)
Q Consensus 363 l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 405 (443)
+...++++++||+++ +.+.++++.++|++.+.++..+..+
T Consensus 546 ~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 546 IDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999976 6789999999999999999975544
No 13
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-66 Score=510.74 Aligned_cols=398 Identities=49% Similarity=0.772 Sum_probs=368.5
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
||+||||||||++|+++.+. +..++|||+||||||+||+++.++.|+|. |||..++.|+...|+.
T Consensus 191 lrvineptaaalaygld~k~----~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~ 266 (640)
T KOG0102|consen 191 LRVINEPTAAALAYGLDKKE----DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKK 266 (640)
T ss_pred eccCCccchhHHhhcccccC----CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHhhhc
Confidence 68999999999999998774 78999999999999999999999999998 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCC----ceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEG----IDFYATITRARFEVLNMDLFRKCMEHVEKCLRN 145 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~----~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~ 145 (443)
..++++..+.++++||+.++|++|+.||...++.++++.+..+ ..+++++||.+||+++.++++|.+.+++++|++
T Consensus 267 ~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~d 346 (640)
T KOG0102|consen 267 EEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRD 346 (640)
T ss_pred ccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHh
Confidence 9999999999999999999999999999999999999987765 689999999999999999999999999999999
Q ss_pred cCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccce
Q 043979 146 SKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGI 225 (443)
Q Consensus 146 a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi 225 (443)
|++..+||+.|+||||++|||.|++.++++| ++.+...+||||+||.|||+++..++|+ ++++.+.|++|.++||
T Consensus 347 A~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLLdVtpLsLgi 421 (640)
T KOG0102|consen 347 ASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLLDVTPLSLGI 421 (640)
T ss_pred ccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeeeecchHHHHH
Confidence 9999999999999999999999999999999 6888999999999999999999999986 8999999999999999
Q ss_pred EeecCeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCC
Q 043979 226 ETAGGVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDAN 305 (443)
Q Consensus 226 ~~~~~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~ 305 (443)
++-+|.|..+||+++.||++++..|++..|+|+.+.|.+|||++....+|..+|+|.+.|+||.|+|.|+|+|+|.+|+|
T Consensus 422 etlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdan 501 (640)
T KOG0102|consen 422 ETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDAN 501 (640)
T ss_pred HhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeeeccCeeeeEEEecCCCCCCHHHHHHHH------------------Hhhcccc---------hhhhCCCChH
Q 043979 306 GILHVSAKDMTVGVKNHITITNDKGRLSKEEIERMV------------------MRNTVRD---------EKFAGKLDPA 358 (443)
Q Consensus 306 g~l~v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~------------------~r~~l~~---------~~~~~~~~~~ 358 (443)
|+++|+|.++.||+..++++....+ ||++|++.|. .+++.+. ..+...++.+
T Consensus 502 GI~~vsA~dk~t~K~qsi~i~~sgg-Ls~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~ 580 (640)
T KOG0102|consen 502 GIGTVSAKDKGTGKSQSITIASSGG-LSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAE 580 (640)
T ss_pred ceeeeehhhcccCCccceEEeecCC-CCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhhCcHH
Confidence 9999999999999999999977655 9999999987 1111111 2355667777
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHccCC
Q 043979 359 DKQKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYEGSA 408 (443)
Q Consensus 359 e~~~l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~ 408 (443)
+..+|...+....+.+..-...+.++++.+...|++..-|++.-++..++
T Consensus 581 ~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~ 630 (640)
T KOG0102|consen 581 ECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMG 630 (640)
T ss_pred HHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhc
Confidence 77899999999888887533334588999999999999999999888776
No 14
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=8.3e-65 Score=538.43 Aligned_cols=384 Identities=37% Similarity=0.631 Sum_probs=343.2
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|++.... ++++||||+||||||+||+++.++.++|+ |||.+|++|+.+++.
T Consensus 180 ~~li~EPtAAAlay~~~~~~----~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~- 254 (616)
T PRK05183 180 LRLLNEPTAAAIAYGLDSGQ----EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG- 254 (616)
T ss_pred EEEecchHHHHHHhhcccCC----CCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC-
Confidence 47999999999999986543 68999999999999999999999998887 999999999998664
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKID 149 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~ 149 (443)
.+...+++.+.+|+.+||++|+.||.+.++.+.++.+ ...|||++|+++|+|+++++..+++++|++++++
T Consensus 255 ---~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~ 325 (616)
T PRK05183 255 ---LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRALRDAGVE 325 (616)
T ss_pred ---CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4445688999999999999999999999888888532 2249999999999999999999999999999999
Q ss_pred cCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccceEeec
Q 043979 150 KSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGIETAG 229 (443)
Q Consensus 150 ~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~ 229 (443)
+.+|+.|+||||+||||+|++.|+++|+ ..+..++|||+|||+|||++|+.+++ .+..+++.+.|++|++||+++.+
T Consensus 326 ~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npdeaVA~GAAi~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~ 402 (616)
T PRK05183 326 ADEVKEVVMVGGSTRVPLVREAVGEFFG-RTPLTSIDPDKVVAIGAAIQADILAG--NKPDSDMLLLDVIPLSLGLETMG 402 (616)
T ss_pred cccCCEEEEECCcccChHHHHHHHHHhc-cCcCcCCCchHHHHHHHHHHHHHhcc--ccccCceEEEeeccccccceecC
Confidence 9999999999999999999999999995 56677899999999999999999985 34467899999999999999999
Q ss_pred CeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCCceEE
Q 043979 230 GVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDANGILH 309 (443)
Q Consensus 230 ~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~ 309 (443)
|.+.+|||+|+++|++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.|+|+.+.|.++|+|+|++|.||+|+
T Consensus 403 g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~ 482 (616)
T PRK05183 403 GLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLS 482 (616)
T ss_pred CeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred EEEeeeccCeeeeEEEecCCCCCCHHHHHHHH------------------Hhhcccc------hhh---hCCCChHHHHH
Q 043979 310 VSAKDMTVGVKNHITITNDKGRLSKEEIERMV------------------MRNTVRD------EKF---AGKLDPADKQK 362 (443)
Q Consensus 310 v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~------------------~r~~l~~------~~~---~~~~~~~e~~~ 362 (443)
|++.+..+|++.++.+.+.. .|+++++++++ .|+.++. ..+ ...++++++++
T Consensus 483 V~a~~~~~~~~~~~~i~~~~-~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 561 (616)
T PRK05183 483 VTAMEKSTGVEASIQVKPSY-GLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAA 561 (616)
T ss_pred EEEEEcCCCcEEEecccccc-cCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999999999999887654 59999999876 1111111 112 24789999999
Q ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHc
Q 043979 363 IEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYE 405 (443)
Q Consensus 363 l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 405 (443)
+.+.++++++||+.+ +.+.+++++++|++.+.++..+..+
T Consensus 562 ~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~ 601 (616)
T PRK05183 562 IDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMD 601 (616)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999865 7789999999999999999985554
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.3e-62 Score=517.67 Aligned_cols=373 Identities=33% Similarity=0.548 Sum_probs=316.7
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|+..... +.++||||+||||||||++++.++.++|+ |||.+|++|+.++|..
T Consensus 172 ~~li~EPtAAAlay~~~~~~----~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~ 247 (595)
T PRK01433 172 LRLIAEPTAAAYAYGLNKNQ----KGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDL 247 (595)
T ss_pred EEEecCcHHHHHHHhcccCC----CCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCC
Confidence 47999999999999986543 57899999999999999999999999887 9999999999987732
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKID 149 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~ 149 (443)
..+.. .++.||++|+.||.+....+ ..++|||++|+++|+|+++++..+|+++|++++
T Consensus 248 ------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~-- 305 (595)
T PRK01433 248 ------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQECLEQAG-- 305 (595)
T ss_pred ------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--
Confidence 22222 23459999999998765321 168999999999999999999999999999998
Q ss_pred cCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccceEeec
Q 043979 150 KSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGIETAG 229 (443)
Q Consensus 150 ~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~ 229 (443)
+.+|+.|+||||+||||+|+++|+++| +.++..++||++|||+|||++|+.+++. ..++.+.|++|++||+++.+
T Consensus 306 ~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgi~~~~ 380 (595)
T PRK01433 306 NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPLSLGMELYG 380 (595)
T ss_pred cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEecccceEEEecC
Confidence 578999999999999999999999999 4677889999999999999999999853 35789999999999999999
Q ss_pred CeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCCceEE
Q 043979 230 GVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDANGILH 309 (443)
Q Consensus 230 ~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~ 309 (443)
|.+.+|||||+++|++++..|++..|+|+.+.|.||||++..+.+|..||+|.|+|+|+.+.|.++|+|+|++|.||+|+
T Consensus 381 g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~ 460 (595)
T PRK01433 381 GIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILS 460 (595)
T ss_pred CEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred EEEeeeccCeeeeEEEecCCCCCCHHHHHHHH------------------Hhhcccc-----h----hhhCCCChHHHHH
Q 043979 310 VSAKDMTVGVKNHITITNDKGRLSKEEIERMV------------------MRNTVRD-----E----KFAGKLDPADKQK 362 (443)
Q Consensus 310 v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~------------------~r~~l~~-----~----~~~~~~~~~e~~~ 362 (443)
|++.+..||++.++.|.+.. .||++|+++++ .++.++. + .+...+++++|+.
T Consensus 461 V~a~~~~t~~~~~~~i~~~~-~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 539 (595)
T PRK01433 461 VSAYEKISNTSHAIEVKPNH-GIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESEISI 539 (595)
T ss_pred EEEEEcCCCcEEEEEecCCC-CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999999999999997654 49999999887 1111111 1 1334578999999
Q ss_pred HHHHHHHHHHHhcCCCCc----CHHHHHHHHHH-HHHhHHHHHHHHHc
Q 043979 363 IEKAIDEAIEWLDGNQLA----EVDELEDKLKE-LEGLCYPIIVKMYE 405 (443)
Q Consensus 363 l~~~~~~~~~Wl~~~~~a----~~~~~~~kl~~-L~~~~~~i~~R~~e 405 (443)
+...++++++||+.+... ..+++++.++. |++.++|++.++.+
T Consensus 540 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 587 (595)
T PRK01433 540 INSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIINDLLK 587 (595)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 999999999999865211 23344444444 44555556665554
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=2.4e-62 Score=523.68 Aligned_cols=393 Identities=44% Similarity=0.762 Sum_probs=352.4
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
++||+||+|||++|++.+.. .++++|||||||||||+|++++.++.++++ +||.+|++|+.++|..
T Consensus 166 ~~li~Ep~Aaa~~y~~~~~~---~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~ 242 (602)
T PF00012_consen 166 LRLINEPTAAALAYGLERSD---KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKK 242 (602)
T ss_dssp EEEEEHHHHHHHHTTTTSSS---SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHH
T ss_pred ceeecccccccccccccccc---cccceeccccccceEeeeehhcccccccccccccccccccceecceeeccccccccc
Confidence 47999999999999887764 578999999999999999999999998887 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCC--CCceeeeeccccC-CceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSS--TKQTTIEIDSLYE-GIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNS 146 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~--~~~~~i~i~~~~~-~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a 146 (443)
+++.++..+++.+.+|+.+||++|+.||. +.+..+.++.+.+ |.++.++|||++|+++++|+++++..+|+++|+++
T Consensus 243 ~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~ 322 (602)
T PF00012_consen 243 KYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDA 322 (602)
T ss_dssp HHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccc
Confidence 99999999999999999999999999999 5667778877777 88999999999999999999999999999999999
Q ss_pred CCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccceE
Q 043979 147 KIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGIE 226 (443)
Q Consensus 147 ~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~ 226 (443)
+++..+|+.|+||||+||+|+||+.|++.|+ ..+..++||++|||+|||++|+.++ +.++.+++.+.|++|++|||+
T Consensus 323 ~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~--~~~~~~~~~~~d~~~~~~~i~ 399 (602)
T PF00012_consen 323 GLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILS--GSFRVKDIKIIDVTPFSIGIE 399 (602)
T ss_dssp T--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHH--TSCSSTSSCESEBESSEEEEE
T ss_pred cccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhc--ccccccccccccccccccccc
Confidence 9999999999999999999999999999996 7888999999999999999999999 456788999999999999999
Q ss_pred eecCeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCCc
Q 043979 227 TAGGVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDANG 306 (443)
Q Consensus 227 ~~~~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~g 306 (443)
+.++.+.+++++|+++|+..+..|.+..++|..+.+.||+|+.....+|..||++.|.++++.+.|.++|.++|++|.+|
T Consensus 400 ~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~G 479 (602)
T PF00012_consen 400 VSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENG 479 (602)
T ss_dssp ETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTS
T ss_pred ccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeeee
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred eEEEEEeeeccCeeeeEEEecCCCCCCHHHHHHHH-----------------------------HhhcccchhhhCCCCh
Q 043979 307 ILHVSAKDMTVGVKNHITITNDKGRLSKEEIERMV-----------------------------MRNTVRDEKFAGKLDP 357 (443)
Q Consensus 307 ~l~v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~-----------------------------~r~~l~~~~~~~~~~~ 357 (443)
+|+|++.+..++....+.+..... +++++++++. +|+.+++. ...+++
T Consensus 480 il~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~~~~~~ 556 (602)
T PF00012_consen 480 ILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--KDFVSE 556 (602)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--GGGSTH
T ss_pred ehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--hccCCH
Confidence 999999999999988888877665 8898887665 33333332 345555
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CCcCHHHHHHHHHHHHHhHHHHHHHHHc
Q 043979 358 ADKQKIEKAIDEAIEWLDGN-QLAEVDELEDKLKELEGLCYPIIVKMYE 405 (443)
Q Consensus 358 ~e~~~l~~~~~~~~~Wl~~~-~~a~~~~~~~kl~~L~~~~~~i~~R~~e 405 (443)
+++ .+.+++..+||+++ ..++.++|++|+++|++..+||..|+++
T Consensus 557 ~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 557 EEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555 78899999999987 5678999999999999999999999863
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-62 Score=510.61 Aligned_cols=388 Identities=55% Similarity=0.846 Sum_probs=363.7
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHHHHh
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAEFKR 69 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~~~~ 69 (443)
+||||||||||++|++.... +.+|||||+||||||+||+++.++.++|+ |||.+|++|+..+|..
T Consensus 151 lrlinEPtAAAlayg~~~~~----~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~ 226 (579)
T COG0443 151 LRLINEPTAAALAYGLDKGK----EKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKG 226 (579)
T ss_pred EEEecchHHHHHHhHhccCC----CcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhc
Confidence 58999999999999998874 88999999999999999999999999988 9999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 043979 70 KHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKID 149 (443)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~ 149 (443)
++++++..+++.++||+.+||++|+.||...++.+.++.+..+.++..+|||++||.++.+++.++..+++++|.+++++
T Consensus 227 ~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~ 306 (579)
T COG0443 227 KGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLE 306 (579)
T ss_pred cCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999998887778889999999999999999999999999999999999
Q ss_pred cCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccceEeec
Q 043979 150 KSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGIETAG 229 (443)
Q Consensus 150 ~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~ 229 (443)
+.+|+.|+||||+||||.|++.++++|+ +++..++|||++||.|||++|..+++. .+++.+.|++|+++|+++.+
T Consensus 307 ~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~----~~d~ll~Dv~plslgie~~~ 381 (579)
T COG0443 307 KSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGE----VPDVLLLDVIPLSLGIETLG 381 (579)
T ss_pred hhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCc----ccCceEEeeeeeccccccCc
Confidence 9999999999999999999999999995 889999999999999999999999864 33899999999999999999
Q ss_pred CeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecCCceEE
Q 043979 230 GVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDANGILH 309 (443)
Q Consensus 230 ~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~ 309 (443)
+.+.++|++++.+|.++...|++..|+|..+.+.+++|++....+|..+|.|.+.++|+++.|.++|+++|.+|.||+++
T Consensus 382 ~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~ 461 (579)
T COG0443 382 GVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILN 461 (579)
T ss_pred chhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccCeeeeEEEecCCCCCCHHHHHHHH-----------------------------HhhcccchhhhCCCChHHH
Q 043979 310 VSAKDMTVGVKNHITITNDKGRLSKEEIERMV-----------------------------MRNTVRDEKFAGKLDPADK 360 (443)
Q Consensus 310 v~~~~~~tg~~~~i~i~~~~~~ls~eei~~~~-----------------------------~r~~l~~~~~~~~~~~~e~ 360 (443)
|++.+..+|++..+.|....+ |+++++++|. ++..|.+ .. .++++++
T Consensus 462 v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~ 537 (579)
T COG0443 462 VTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKE--IV-KVSEEEK 537 (579)
T ss_pred eeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhh--hc-cCCHHHH
Confidence 999999999999999999888 9999999987 1112221 22 6889999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHc
Q 043979 361 QKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCYPIIVKMYE 405 (443)
Q Consensus 361 ~~l~~~~~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 405 (443)
.++..++.++++||+. . .++++.+.++|+....++..++++
T Consensus 538 ~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 538 EKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998 2 889999999999999999988764
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-54 Score=436.17 Aligned_cols=395 Identities=28% Similarity=0.501 Sum_probs=344.0
Q ss_pred CcccchhHHHHHHhccccCcCC---CCCcEEEEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHHH
Q 043979 1 MRIINEPAAATIVYGLDKKASR---TGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVAE 66 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~---~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~~ 66 (443)
|||++|.||+||+|++.+.... .++.+++++|+|.+++.+|++.|..|.+.++ |||++|.+||+.+
T Consensus 168 lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 168 LRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred eeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 6899999999999999887642 4578999999999999999999999999988 9999999999999
Q ss_pred HHhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043979 67 FKRKHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNS 146 (443)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a 146 (443)
|+.+|++|...++++..||+.+|||+|+.||+++..+++|++++++.|.+..|+|++||++|.|+++|+..++.++|+++
T Consensus 248 fk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~ 327 (727)
T KOG0103|consen 248 FKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADA 327 (727)
T ss_pred hccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEEEecccccceE
Q 043979 147 KIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLLDVTPLSLGIE 226 (443)
Q Consensus 147 ~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~ 226 (443)
+++.+||+.|.+|||+||+|.|.++|+++| ++.+.+++|.|+|||+|||+++|++| |.++++++.+.|+.|++|.+.
T Consensus 328 ~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlS--P~frVRef~v~Di~pysIs~~ 404 (727)
T KOG0103|consen 328 KLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILS--PTFRVREFSVEDIVPYSISLR 404 (727)
T ss_pred cCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcC--ccccceecceecccceeEEEE
Confidence 999999999999999999999999999999 68999999999999999999999999 999999999999999999998
Q ss_pred ee----c-CeeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeecc-ccccccCceeeEEEEeCCCCCCCC-CCeEEEE
Q 043979 227 TA----G-GVMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGE-RARAKYNNLLGKFELMGIPPAPKG-VPQINVC 299 (443)
Q Consensus 227 ~~----~-~~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge-~~~~~~n~~ig~~~l~~i~~~~~g-~~~i~v~ 299 (443)
+. + +....+||+|.++|.++..+|....+ |.+.++++. ...+.....|++|.+.++.+...| ..++.|.
T Consensus 405 w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~----F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKvk 480 (727)
T KOG0103|consen 405 WVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGP----FTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKVK 480 (727)
T ss_pred eccccccCCCceeeecCCCCCCCceEEEEEecCc----eEEEEEeccccccCCCCCceeeEEecccccCccccccceeEE
Confidence 75 3 45578999999999999999987763 788877765 444445579999999988876653 4569999
Q ss_pred EEecCCceEEEEEeeec----------------------------cCe----eeeEEEec-CCCCCCHHHHHHHH-----
Q 043979 300 FDIDANGILHVSAKDMT----------------------------VGV----KNHITITN-DKGRLSKEEIERMV----- 341 (443)
Q Consensus 300 f~~d~~g~l~v~~~~~~----------------------------tg~----~~~i~i~~-~~~~ls~eei~~~~----- 341 (443)
.+++.+|++++.....- .++ ...+++.. ..+.|+..+++..+
T Consensus 481 vr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~ 560 (727)
T KOG0103|consen 481 VRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENK 560 (727)
T ss_pred EEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHHHHHHH
Confidence 99999999998643210 010 01122222 12457777665443
Q ss_pred ------------------------HhhcccchhhhCCCChHHHHHHHHHHHHHHHHhcCC-CCcCHHHHHHHHHHHHHhH
Q 043979 342 ------------------------MRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGN-QLAEVDELEDKLKELEGLC 396 (443)
Q Consensus 342 ------------------------~r~~l~~~~~~~~~~~~e~~~l~~~~~~~~~Wl~~~-~~a~~~~~~~kl~~L~~~~ 396 (443)
||++|.+ .|..++++.+++.|...++++++|||++ ++.++..|..||.+|+..+
T Consensus 561 M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~-~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g 639 (727)
T KOG0103|consen 561 MILQDKLEKETVDAKNALEEYVYDMRDKLSD-KYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLG 639 (727)
T ss_pred hhhhhhhhhhhccHHHHHHHHHHHHHHHhhh-hhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhh
Confidence 6777765 5889999999999999999999999987 7789999999999999998
Q ss_pred HHHHHHHHc
Q 043979 397 YPIIVKMYE 405 (443)
Q Consensus 397 ~~i~~R~~e 405 (443)
+ ..|+.+
T Consensus 640 ~--~~r~~e 646 (727)
T KOG0103|consen 640 D--KKRFDE 646 (727)
T ss_pred h--hhhhhh
Confidence 6 445444
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-47 Score=389.12 Aligned_cols=397 Identities=27% Similarity=0.447 Sum_probs=325.4
Q ss_pred CcccchhHHHHHHhccccCcCC-CCCcEEEEEEeCCceeEEEEEEEeC----------Ceeeeh-----------HHHHH
Q 043979 1 MRIINEPAAATIVYGLDKKASR-TGEKNVLIFDLGGGTFDVSLLMIEE----------GIFEVK-----------DFDNR 58 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~-~~~~~vlV~D~GggT~Dvsv~~~~~----------~~~~v~-----------d~D~~ 58 (443)
|+||||-+||||.|++.++..+ ..++++||||||+|++.++++.+.- ..+.++ .|.++
T Consensus 189 LqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~r 268 (902)
T KOG0104|consen 189 LQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMR 268 (902)
T ss_pred hhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHH
Confidence 6899999999999999986654 5689999999999999999999752 234444 89999
Q ss_pred HHHHHHHHHHhhccC--CCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHH
Q 043979 59 LVNNFVAEFKRKHKI--DISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCM 136 (443)
Q Consensus 59 l~~~l~~~~~~~~~~--~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~ 136 (443)
|.+||.+.|.++++. ++..+|++|++|.++|+++|..||+|.++.+.|+++++++||+.+|||++||++|.++..++.
T Consensus 269 Lr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~ 348 (902)
T KOG0104|consen 269 LRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIV 348 (902)
T ss_pred HHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhh
Confidence 999999999998874 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhCCCCccccceEEE
Q 043979 137 EHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSGEGNEKVQDLLLL 216 (443)
Q Consensus 137 ~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~~~~~~~~~~~~~ 216 (443)
.||.++|..++++.++|+.|+|+||+||+|.||+.|.++.+..++...+|+|||++.||+++||.|| ..|+++++.+.
T Consensus 349 ~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS--ksFKvKpf~V~ 426 (902)
T KOG0104|consen 349 EPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS--KSFKVKPFNVV 426 (902)
T ss_pred hhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc--ccccccceeee
Confidence 9999999999999999999999999999999999999999888999999999999999999999999 68999999999
Q ss_pred EecccccceEeecC--------eeEEEEeCCCCcCcceEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCC
Q 043979 217 DVTPLSLGIETAGG--------VMTTLIPRNTTIPTKKEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPP 288 (443)
Q Consensus 217 d~~~~sigi~~~~~--------~~~~ii~k~~~iP~~~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~ 288 (443)
|.++|+|-++..+. ....+|+++.++|.++..+|+.+.|+ +.+.+-.+.-. ..+-.|++.|+..
T Consensus 427 D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl~~velsgV~d 498 (902)
T KOG0104|consen 427 DASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNLTTVELSGVKD 498 (902)
T ss_pred ecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCccEEEEecchH
Confidence 99999998876533 23468999999999998888776653 33332222110 2344788887653
Q ss_pred CC----C---CCCeEEEEEEecCCceEEEEEeeecc------------------C-------------------------
Q 043979 289 AP----K---GVPQINVCFDIDANGILHVSAKDMTV------------------G------------------------- 318 (443)
Q Consensus 289 ~~----~---g~~~i~v~f~~d~~g~l~v~~~~~~t------------------g------------------------- 318 (443)
.- . ....|.++|.+|.+|++.|+...... |
T Consensus 499 ~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep 578 (902)
T KOG0104|consen 499 ALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEP 578 (902)
T ss_pred HHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhhhhccCc
Confidence 21 1 12349999999999999987543100 0
Q ss_pred -e-ee-------------------------------------eEEEecC---CCCCCHHHHHHHH---------------
Q 043979 319 -V-KN-------------------------------------HITITND---KGRLSKEEIERMV--------------- 341 (443)
Q Consensus 319 -~-~~-------------------------------------~i~i~~~---~~~ls~eei~~~~--------------- 341 (443)
+ .. .+.|+.. ..-|....++...
T Consensus 579 ~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~ 658 (902)
T KOG0104|consen 579 SERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSE 658 (902)
T ss_pred cccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHH
Confidence 0 00 1222221 1124444333222
Q ss_pred --------------HhhcccchhhhCCCChHHHHHHHHHHHHHHHHhcCC-CCcCHHHHHHHHHHHHHhHHHHHHHHHcc
Q 043979 342 --------------MRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGN-QLAEVDELEDKLKELEGLCYPIIVKMYEG 406 (443)
Q Consensus 342 --------------~r~~l~~~~~~~~~~~~e~~~l~~~~~~~~~Wl~~~-~~a~~~~~~~kl~~L~~~~~~i~~R~~e~ 406 (443)
+..+|+++.|..+.+++|+..|...+..+.+||+++ .+....+|.+++.+|++++..+.+|..+.
T Consensus 659 re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~ 738 (902)
T KOG0104|consen 659 REEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEER 738 (902)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 455666678999999999999999999999999987 66799999999999999999999987775
Q ss_pred C
Q 043979 407 S 407 (443)
Q Consensus 407 ~ 407 (443)
.
T Consensus 739 k 739 (902)
T KOG0104|consen 739 K 739 (902)
T ss_pred H
Confidence 4
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=7.7e-32 Score=275.23 Aligned_cols=192 Identities=23% Similarity=0.306 Sum_probs=157.2
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCC-------eeeeh----------HHHHHHH-HH
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEG-------IFEVK----------DFDNRLV-NN 62 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~-------~~~v~----------d~D~~l~-~~ 62 (443)
++|++||+|||++|+.... .+..+||||+||||||+||+++.++ ..+|+ |||.+|+ ++
T Consensus 188 v~li~EPtAAAl~y~~~~~----~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G~~lGG~DfD~~L~~~~ 263 (450)
T PRK11678 188 VEFQFEPVAAGLDFEATLT----EEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSGQRIGGNDLDIALAFKQ 263 (450)
T ss_pred EEEEcCHHHHHHHhccccC----CCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCCCCCChHHHHHHHHHHH
Confidence 4799999999999986543 4789999999999999999998653 23444 9999998 67
Q ss_pred HHHHHHh----hccCCC-----------------------------------ccCHHHH------------HHHHHHHHH
Q 043979 63 FVAEFKR----KHKIDI-----------------------------------SGNARAL------------RRLRTAYER 91 (443)
Q Consensus 63 l~~~~~~----~~~~~~-----------------------------------~~~~~~~------------~~L~~~~E~ 91 (443)
+...|.. +++.++ ..+++.+ .+|+.+||+
T Consensus 264 ~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~ 343 (450)
T PRK11678 264 LMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEE 343 (450)
T ss_pred HHHHhhhchhhccCCcCcchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 7776641 112110 1133333 368899999
Q ss_pred HHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHH
Q 043979 92 AKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQL 171 (443)
Q Consensus 92 ~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~ 171 (443)
+|+.||.+.++.+.++.+. .++..+|||++|+++++|+++++..+|+++|+++++. ++.|+||||+|+||.|++.
T Consensus 344 aK~~LS~~~~a~i~~~~~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~ 418 (450)
T PRK11678 344 AKIALSDQAETRASLDFIS--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAA 418 (450)
T ss_pred HHHHcCCCCceEEEecccC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHH
Confidence 9999999999999998654 3477899999999999999999999999999999975 5799999999999999999
Q ss_pred HHhhhCCccccccCCcchhhhhhhhhHHHHH
Q 043979 172 LQDFFNGKELCKSINPDEVVAYGAAVQASIL 202 (443)
Q Consensus 172 l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l 202 (443)
|++.||+.+ ....+|.++||.|+|++|..+
T Consensus 419 l~~~fg~~~-v~~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 419 LAQQLPGIP-IVGGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred HHHHCCCCc-EEeCCCcchHHHHHHHHHHhh
Confidence 999996544 456799999999999999753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.94 E-value=2.4e-25 Score=221.45 Aligned_cols=184 Identities=20% Similarity=0.313 Sum_probs=147.2
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeee-h-----HHHHHHHHHHHHHHHhhccCC
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEV-K-----DFDNRLVNNFVAEFKRKHKID 74 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v-~-----d~D~~l~~~l~~~~~~~~~~~ 74 (443)
++|++||+|||++|+.... ++..++|||+||||||+++++...-...- . |||+.|++++.++|.. .
T Consensus 126 ~~li~ep~Aaa~~~g~~~~----~~~~~lVvDiGggttdvsvv~~g~~~~~~~~~lGG~did~~i~~~l~~~~~~----~ 197 (336)
T PRK13928 126 VYLIEEPLAAAIGAGLDIS----QPSGNMVVDIGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAIIRYIRKKYKL----L 197 (336)
T ss_pred eEecccHHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEEeCCEEEeCCcCCHHHHHHHHHHHHHHHHhch----h
Confidence 4689999999999987543 36779999999999999999875322111 1 9999999999876632 1
Q ss_pred CccCHHHHHHHHHHHHHHHHHcCCCC----ceeeee--ccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Q 043979 75 ISGNARALRRLRTAYERAKRTLSSTK----QTTIEI--DSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSK- 147 (443)
Q Consensus 75 ~~~~~~~~~~L~~~~E~~K~~LS~~~----~~~i~i--~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~- 147 (443)
.. ...||++|+.++... ...+.+ ..+..+.+..++|+|++|+++++++++++.+.|+++|+.++
T Consensus 198 ~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~ 268 (336)
T PRK13928 198 IG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPP 268 (336)
T ss_pred cC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 11 257999999987531 123333 22345667789999999999999999999999999999986
Q ss_pred -CCcCCcc-eEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHH
Q 043979 148 -IDKSQVH-DVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASIL 202 (443)
Q Consensus 148 -~~~~~id-~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l 202 (443)
+..+.++ .|+|+||+|++|.|++++++.| +.++....||++|||+|||+++..+
T Consensus 269 ~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 269 ELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred cccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 4456677 7999999999999999999999 5677888899999999999998764
No 22
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.91 E-value=2.2e-23 Score=207.31 Aligned_cols=183 Identities=22% Similarity=0.337 Sum_probs=144.4
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeee---h---HHHHHHHHHHHHHHHhhccCC
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEV---K---DFDNRLVNNFVAEFKRKHKID 74 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v---~---d~D~~l~~~l~~~~~~~~~~~ 74 (443)
+.|++||+|||++|+.... ++..++|||+||||||+++++..+-.+.- + +||+.|.+++.+++. ..
T Consensus 127 ~~li~ep~aaa~~~g~~~~----~~~~~lvvDiGggttdvs~v~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~----~~ 198 (334)
T PRK13927 127 VYLIEEPMAAAIGAGLPVT----EPTGSMVVDIGGGTTEVAVISLGGIVYSKSVRVGGDKFDEAIINYVRRNYN----LL 198 (334)
T ss_pred eccCCChHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEecCCeEeeCCcCChHHHHHHHHHHHHHHHhC----cC
Confidence 4689999999999987543 35679999999999999999876432221 1 999999999986552 22
Q ss_pred CccCHHHHHHHHHHHHHHHHHcCCCCc----eeeee--ccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043979 75 ISGNARALRRLRTAYERAKRTLSSTKQ----TTIEI--DSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKI 148 (443)
Q Consensus 75 ~~~~~~~~~~L~~~~E~~K~~LS~~~~----~~i~i--~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~ 148 (443)
. + ...||++|+.++.... ..+.+ +.+..+.+..++|+|++|++++.++++++.+.|.++|++++.
T Consensus 199 ~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~ 269 (334)
T PRK13927 199 I--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPP 269 (334)
T ss_pred c--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 1 1 2468999999875322 22332 334456667899999999999999999999999999999864
Q ss_pred C--cCCcc-eEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHH
Q 043979 149 D--KSQVH-DVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASI 201 (443)
Q Consensus 149 ~--~~~id-~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~ 201 (443)
. .+.++ .|+|+||+|++|.++++|++.| +.++....||+++||+|||+++..
T Consensus 270 ~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 270 ELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred hhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 3 23344 5999999999999999999999 577888889999999999999865
No 23
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.90 E-value=1.7e-22 Score=200.55 Aligned_cols=181 Identities=20% Similarity=0.282 Sum_probs=143.6
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeee---h---HHHHHHHHHHHHHHHhhccCC
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEV---K---DFDNRLVNNFVAEFKRKHKID 74 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v---~---d~D~~l~~~l~~~~~~~~~~~ 74 (443)
++|++||+|||++|++... ++..++|||+||||+|++++++.+-.+.- + +||+.|.+++.+.+. ..
T Consensus 129 ~~li~ep~Aaa~~~g~~~~----~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~l~~~l~~~~~----~~ 200 (335)
T PRK13929 129 VHLIEEPVAAAIGADLPVD----EPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDIVSFVRKKYN----LL 200 (335)
T ss_pred eEeecCHHHHHHhcCCCcC----CCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHHHHHHHHHHhC----cC
Confidence 4689999999999987543 36789999999999999999865422111 1 999999999986552 22
Q ss_pred CccCHHHHHHHHHHHHHHHHHcCCCC----ceeeeec--cccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043979 75 ISGNARALRRLRTAYERAKRTLSSTK----QTTIEID--SLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKI 148 (443)
Q Consensus 75 ~~~~~~~~~~L~~~~E~~K~~LS~~~----~~~i~i~--~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~ 148 (443)
. . ...||++|+.++... ...+.+. ++..+.+..++++|++|++++.+++.++.+.|++.|+++..
T Consensus 201 ~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~ 271 (335)
T PRK13929 201 I--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPP 271 (335)
T ss_pred c--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 2 1 257999999998631 2223332 23345667899999999999999999999999999999864
Q ss_pred C--cCCcc-eEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHH
Q 043979 149 D--KSQVH-DVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 149 ~--~~~id-~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a 199 (443)
. .+.++ .|+|+||+|++|.+++++++.| +.++....||+++||+||+..-
T Consensus 272 ~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 272 ELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred ccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 3 35677 6999999999999999999999 5777788899999999999864
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.89 E-value=4.5e-22 Score=197.71 Aligned_cols=183 Identities=22% Similarity=0.333 Sum_probs=141.5
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeee---h---HHHHHHHHHHHHHHHhhccCC
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEV---K---DFDNRLVNNFVAEFKRKHKID 74 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v---~---d~D~~l~~~l~~~~~~~~~~~ 74 (443)
+.|++||+|||++|+.... ++..++|||+||||||++++++.+-.+.- + |||+.|++++.+++. ..
T Consensus 129 ~~li~ep~aaa~~~g~~~~----~~~~~lVvDiG~gttdvs~v~~~~~~~~~~~~lGG~did~~l~~~l~~~~~----~~ 200 (333)
T TIGR00904 129 VYLIEEPMAAAIGAGLPVE----EPTGSMVVDIGGGTTEVAVISLGGIVVSRSIRVGGDEFDEAIINYIRRTYN----LL 200 (333)
T ss_pred EEEecCHHHHHHhcCCccc----CCceEEEEEcCCCeEEEEEEEeCCEEecCCccchHHHHHHHHHHHHHHHhc----cc
Confidence 4689999999999986543 36789999999999999999876422211 1 999999999986552 11
Q ss_pred CccCHHHHHHHHHHHHHHHHHcCCCCc-----eeeeecc--ccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 043979 75 ISGNARALRRLRTAYERAKRTLSSTKQ-----TTIEIDS--LYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSK 147 (443)
Q Consensus 75 ~~~~~~~~~~L~~~~E~~K~~LS~~~~-----~~i~i~~--~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~ 147 (443)
.. +..||++|+.|+.... ..+.+.. ...+......|++++|.+++.+.++++.+.|.+.|+.+.
T Consensus 201 ~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~ 271 (333)
T TIGR00904 201 IG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTP 271 (333)
T ss_pred CC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 3578999999875321 1222211 122344567899999999999999999999999999987
Q ss_pred CCc-CCc-c-eEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHH
Q 043979 148 IDK-SQV-H-DVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASI 201 (443)
Q Consensus 148 ~~~-~~i-d-~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~ 201 (443)
... .++ + .|+|+||+|++|.++++|++.| +.++....||+++||.||++++..
T Consensus 272 ~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 272 PELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred chhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 432 233 3 6999999999999999999999 578888899999999999998753
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.88 E-value=1.2e-21 Score=195.03 Aligned_cols=184 Identities=21% Similarity=0.330 Sum_probs=142.0
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh------HHHHHHHHHHHHHHHhhccCC
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK------DFDNRLVNNFVAEFKRKHKID 74 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~------d~D~~l~~~l~~~~~~~~~~~ 74 (443)
+.+++||+|||++|+..... +...+|||+||||||++++........-. |||+.|.+++.+++ +.+
T Consensus 131 ~~lv~ep~AAa~a~g~~~~~----~~~~lVvDiG~gttdvs~v~~g~~~~~~~~~lGG~~id~~l~~~l~~~~----~~~ 202 (335)
T PRK13930 131 VYLIEEPMAAAIGAGLPVTE----PVGNMVVDIGGGTTEVAVISLGGIVYSESIRVAGDEMDEAIVQYVRRKY----NLL 202 (335)
T ss_pred EEecccHHHHHHhcCCCcCC----CCceEEEEeCCCeEEEEEEEeCCEEeecCcCchhHHHHHHHHHHHHHHh----CCC
Confidence 46899999999999865432 45689999999999999998654222111 99999999998764 222
Q ss_pred CccCHHHHHHHHHHHHHHHHHcCCCCc----eeeeec--cccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043979 75 ISGNARALRRLRTAYERAKRTLSSTKQ----TTIEID--SLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKI 148 (443)
Q Consensus 75 ~~~~~~~~~~L~~~~E~~K~~LS~~~~----~~i~i~--~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~ 148 (443)
.. ...||++|+.++.... ..+.+. .+..+.+..+.|+|++|++++.+.++++.+.|.++|+.+..
T Consensus 203 ~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~ 273 (335)
T PRK13930 203 IG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPP 273 (335)
T ss_pred CC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 21 2578999999975432 122222 23345556789999999999999999999999999998753
Q ss_pred C--cCCcce-EEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHH
Q 043979 149 D--KSQVHD-VVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASIL 202 (443)
Q Consensus 149 ~--~~~id~-ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l 202 (443)
. .+.++. |+|+||+|++|.++++|++.| +.++....+|+++||+|||+++...
T Consensus 274 ~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 274 ELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 3 233465 999999999999999999999 4677778899999999999998643
No 26
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.78 E-value=1.5e-18 Score=164.01 Aligned_cols=141 Identities=23% Similarity=0.367 Sum_probs=112.6
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh------HHHHHHHHHHHHHHHhhccCC
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK------DFDNRLVNNFVAEFKRKHKID 74 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~------d~D~~l~~~l~~~~~~~~~~~ 74 (443)
++|++||.|||++|+.. ..+|+|+||||||+++++...-.+.-. +||+.|.+++ +++
T Consensus 92 ~~li~ep~Aaa~~~~~~---------~~~vvDiGggtt~i~i~~~G~i~~~~~~~~GG~~it~~Ia~~~--------~i~ 154 (239)
T TIGR02529 92 LHVLDEPTAAAAVLQIK---------NGAVVDVGGGTTGISILKKGKVIYSADEPTGGTHMSLVLAGAY--------GIS 154 (239)
T ss_pred EEEeehHHHHHHHhcCC---------CcEEEEeCCCcEEEEEEECCeEEEEEeeecchHHHHHHHHHHh--------CCC
Confidence 36899999999998532 259999999999999976332222111 7887765443 221
Q ss_pred CccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcc
Q 043979 75 ISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKIDKSQVH 154 (443)
Q Consensus 75 ~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~id 154 (443)
+.+||++|+.++. .+++.++++++++++.+.+++.|++.+ ++
T Consensus 155 -----------~~~AE~~K~~~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~~ 196 (239)
T TIGR02529 155 -----------FEEAEEYKRGHKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQG-----VK 196 (239)
T ss_pred -----------HHHHHHHHHhcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhCC-----CC
Confidence 2688999987541 466778999999999999999998654 67
Q ss_pred eEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhh
Q 043979 155 DVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAV 197 (443)
Q Consensus 155 ~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~ 197 (443)
.|+|+||+|++|.+++++++.| +.++..+.||+++||.|||+
T Consensus 197 ~v~LtGG~a~ipgl~e~l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 197 DLYLVGGACSFSGFADVFEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred EEEEECchhcchhHHHHHHHHh-CCCcccCCCCCeehhheeec
Confidence 9999999999999999999999 57888899999999999986
No 27
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.77 E-value=1.7e-18 Score=169.21 Aligned_cols=182 Identities=20% Similarity=0.325 Sum_probs=136.6
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeee--eh----HHHHHHHHHHHHHHHhhccCC
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFE--VK----DFDNRLVNNFVAEFKRKHKID 74 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~--v~----d~D~~l~~~l~~~~~~~~~~~ 74 (443)
+.||+||.|||+..++.-.. +...||+|+||||||++++...+-... +. +||++|.+|+.++|. +.
T Consensus 124 V~li~ep~AaAiGaGl~i~~----~~g~miVDIG~GtTdiavislggiv~s~si~~gG~~~DeaI~~~ir~~y~----l~ 195 (326)
T PF06723_consen 124 VYLIEEPIAAAIGAGLDIFE----PRGSMIVDIGGGTTDIAVISLGGIVASRSIRIGGDDIDEAIIRYIREKYN----LL 195 (326)
T ss_dssp EEEEEHHHHHHHHTT--TTS----SS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHS----EE
T ss_pred EEEecchHHHHhcCCCCCCC----CCceEEEEECCCeEEEEEEECCCEEEEEEEEecCcchhHHHHHHHHHhhC----cc
Confidence 36899999999998876543 788999999999999999964332111 11 999999999999773 11
Q ss_pred CccCHHHHHHHHHHHHHHHHHcCCCCc------eeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043979 75 ISGNARALRRLRTAYERAKRTLSSTKQ------TTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKI 148 (443)
Q Consensus 75 ~~~~~~~~~~L~~~~E~~K~~LS~~~~------~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~ 148 (443)
+. ...||++|+.++.-.. ..+.-.++..|....+.|+-+++.+.+++.+.++.+.|+++|++..-
T Consensus 196 Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pP 266 (326)
T PF06723_consen 196 IG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPP 266 (326)
T ss_dssp -----------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-H
T ss_pred cC---------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 21 3578899999875321 23433456778889999999999999999999999999999997642
Q ss_pred Cc-CCc--ceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHH
Q 043979 149 DK-SQV--HDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 149 ~~-~~i--d~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~ 200 (443)
.. .|| +.|+|+||+++++.+.++|++.+ +.++....||..|||+||.....
T Consensus 267 el~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 267 ELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 21 132 45999999999999999999999 68999999999999999987654
No 28
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.76 E-value=3.8e-18 Score=172.00 Aligned_cols=170 Identities=21% Similarity=0.277 Sum_probs=128.6
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCee-eeh-----HHHHHHHHHHHHHHHhhccCCC
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIF-EVK-----DFDNRLVNNFVAEFKRKHKIDI 75 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~-~v~-----d~D~~l~~~l~~~~~~~~~~~~ 75 (443)
.++.||.|+|++|..... .+..++|+|+||||||+++++-....+ .++ +||+.|.+.+
T Consensus 176 ~i~~~~~A~a~a~~~~~~----~~~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it~~i~~~l------------ 239 (371)
T TIGR01174 176 NIVLSGLASAIAVLTEDE----KELGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHITKDIAKAL------------ 239 (371)
T ss_pred eEEEhhhhhhhhhcCcch----hcCCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHHHHHHHHh------------
Confidence 578999999999854332 356799999999999999986322222 222 7776665432
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCC------CceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHH-HHHHHcCC
Q 043979 76 SGNARALRRLRTAYERAKRTLSST------KQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVE-KCLRNSKI 148 (443)
Q Consensus 76 ~~~~~~~~~L~~~~E~~K~~LS~~------~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~-~~l~~a~~ 148 (443)
...+.+||++|+.++.. .+..+.++.+. .+....|+|++|++++++.++++...|+ +.|++++.
T Consensus 240 -------~~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~ 310 (371)
T TIGR01174 240 -------RTPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGF 310 (371)
T ss_pred -------CCCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 12257899999998863 24456666543 3556799999999999999999999998 99999987
Q ss_pred CcCCcce-EEEecCCcCcHHHHHHHHhhhCCcccc--c----------cCCcchhhhhhhhhH
Q 043979 149 DKSQVHD-VVLVSGSTRIPKVQQLLQDFFNGKELC--K----------SINPDEVVAYGAAVQ 198 (443)
Q Consensus 149 ~~~~id~-ViLvGGssr~p~v~~~l~~~f~~~~i~--~----------~~~pdeaVa~GAa~~ 198 (443)
. .+++. |+|+||+|++|.|++++++.|+. ++. . .-+|..++|.|.++|
T Consensus 311 ~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~-~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 311 K-EELNGGIVLTGGGAQLEGIVELAEKVFDN-PVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred c-ccCCCEEEEeChHHcccCHHHHHHHHhCC-CeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 6 67777 99999999999999999999953 221 1 126778888888764
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.75 E-value=1.7e-17 Score=159.32 Aligned_cols=140 Identities=25% Similarity=0.389 Sum_probs=114.8
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh--------HHHHHHHHHHHHHHHhhccC
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK--------DFDNRLVNNFVAEFKRKHKI 73 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~--------d~D~~l~~~l~~~~~~~~~~ 73 (443)
++++||.|++.+|... ..+|+|+||||||+++++ ++.+... +||+.|++++. +
T Consensus 120 ~ii~e~~A~a~~~~~~---------~~~vvDIGggtt~i~v~~--~g~~~~~~~~~~GG~~it~~Ia~~l~--------i 180 (267)
T PRK15080 120 HVLDEPTAAAAVLGID---------NGAVVDIGGGTTGISILK--DGKVVYSADEPTGGTHMSLVLAGAYG--------I 180 (267)
T ss_pred EEechHHHHHHHhCCC---------CcEEEEeCCCcEEEEEEE--CCeEEEEecccCchHHHHHHHHHHhC--------C
Confidence 4899999999987531 158999999999999975 3322211 88888877642 1
Q ss_pred CCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCc
Q 043979 74 DISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKIDKSQV 153 (443)
Q Consensus 74 ~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i 153 (443)
+ +.+||++|+.++ +++++.++++++++++.+.+++.++.. .+
T Consensus 181 ~-----------~~eAE~lK~~~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~ 222 (267)
T PRK15080 181 S-----------FEEAEQYKRDPK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DV 222 (267)
T ss_pred C-----------HHHHHHHHhccC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CC
Confidence 1 367899988753 357889999999999999999999864 57
Q ss_pred ceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHH
Q 043979 154 HDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 154 d~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a 199 (443)
+.|+|+||+|++|.+++.+++.| +.++..+.||+.++|.|||+||
T Consensus 223 ~~IvLtGG~s~lpgl~e~l~~~l-g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 223 EDIYLVGGTCCLPGFEEVFEKQT-GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CEEEEECCcccchhHHHHHHHHh-CCCcccCCCchHHHHHHHHhhC
Confidence 89999999999999999999999 5788889999999999999875
No 30
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.72 E-value=1.4e-16 Score=162.83 Aligned_cols=171 Identities=18% Similarity=0.252 Sum_probs=125.3
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCee---eeh-----HHHHHHHHHHHHHHHhhccC
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIF---EVK-----DFDNRLVNNFVAEFKRKHKI 73 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~---~v~-----d~D~~l~~~l~~~~~~~~~~ 73 (443)
.++.||.|||+++..... ++..++|+|+||||||+++++ ++.+ .++ +|++.|+..| ++
T Consensus 184 ~iv~ep~Aaa~a~l~~~e----~~~gv~vvDiGggtTdisv~~--~G~l~~~~~i~~GG~~it~dIa~~l--------~i 249 (420)
T PRK09472 184 QLIFAGLASSYAVLTEDE----RELGVCVVDIGGGTMDIAVYT--GGALRHTKVIPYAGNVVTSDIAYAF--------GT 249 (420)
T ss_pred eEEehhhHHHHHhcChhh----hhcCeEEEEeCCCceEEEEEE--CCEEEEEeeeechHHHHHHHHHHHh--------Cc
Confidence 578999999999854432 367799999999999999996 4443 333 6665555433 11
Q ss_pred CCccCHHHHHHHHHHHHHHHHHcCCC------CceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHH-------
Q 043979 74 DISGNARALRRLRTAYERAKRTLSST------KQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVE------- 140 (443)
Q Consensus 74 ~~~~~~~~~~~L~~~~E~~K~~LS~~------~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~------- 140 (443)
-+.+||++|+.+... ....+.++...+.. ...++|.+|.+++++.++++.+.|+
T Consensus 250 -----------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~ 316 (420)
T PRK09472 250 -----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVIEPRYTELLNLVNEEILQLQ 316 (420)
T ss_pred -----------CHHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 136899999764421 23456666543322 2488999999999997666666665
Q ss_pred HHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccc------------cCCcchhhhhhhhhHHH
Q 043979 141 KCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCK------------SINPDEVVAYGAAVQAS 200 (443)
Q Consensus 141 ~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~------------~~~pdeaVa~GAa~~a~ 200 (443)
..|.++++....++.|+|+||+|++|.|++++++.|+ .++.. ..+|..++|.|.++|+.
T Consensus 317 ~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 317 EQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred HHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence 4556778777789999999999999999999999995 32211 24899999999999976
No 31
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.64 E-value=3.1e-15 Score=141.61 Aligned_cols=184 Identities=21% Similarity=0.295 Sum_probs=145.6
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCe----eeeh--HHHHHHHHHHHHHHHhhccCCC
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGI----FEVK--DFDNRLVNNFVAEFKRKHKIDI 75 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~----~~v~--d~D~~l~~~l~~~~~~~~~~~~ 75 (443)
-++.||.|||+..++.-. ++..-||||+||||+|++++.+.+-. +.+- .||.+|++|+.++|+ +
T Consensus 133 ~lieEp~aAAIGaglpi~----ep~G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De~Ii~yvr~~~n------l 202 (342)
T COG1077 133 YLIEEPMAAAIGAGLPIM----EPTGSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDEAIIVYVRKKYN------L 202 (342)
T ss_pred EEeccHHHHHhcCCCccc----CCCCCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhHHHHHHHHHHhC------e
Confidence 489999999997766544 36678999999999999999976532 2222 899999999998774 2
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCC--------CceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 043979 76 SGNARALRRLRTAYERAKRTLSST--------KQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSK 147 (443)
Q Consensus 76 ~~~~~~~~~L~~~~E~~K~~LS~~--------~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~ 147 (443)
..-.+ .+|++|+..... .+..+.-.++..|..-.++++-+++.+.+++.+++|.+.++.+|+...
T Consensus 203 ~IGe~-------taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tp 275 (342)
T COG1077 203 LIGER-------TAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTP 275 (342)
T ss_pred eecHH-------HHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 22222 367777765322 223455556677888889999999999999999999999999999864
Q ss_pred --CCcCCcce-EEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHh
Q 043979 148 --IDKSQVHD-VVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILS 203 (443)
Q Consensus 148 --~~~~~id~-ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~ 203 (443)
+..+-++. ++|+||.+.+.-+.+.|++.. +..+....+|-.|||+|+......+.
T Consensus 276 PeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 276 PELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred chhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 33444666 999999999999999999998 57888889999999999998877654
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.32 E-value=2.9e-11 Score=121.48 Aligned_cols=176 Identities=23% Similarity=0.319 Sum_probs=130.8
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCee-eeh-----HHHHHHHHHHHHHHHhhccCCC
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIF-EVK-----DFDNRLVNNFVAEFKRKHKIDI 75 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~-~v~-----d~D~~l~~~l~~~~~~~~~~~~ 75 (443)
.|+-+|-|+|.+...+.. ++-.++++|+||||||+++++-..-.+ .++ ++...|+..|.-.
T Consensus 183 ~i~l~plAsa~a~L~~dE----kelGv~lIDiG~GTTdIai~~~G~l~~~~~ipvgG~~vT~DIa~~l~t~--------- 249 (418)
T COG0849 183 NIVLEPLASALAVLTEDE----KELGVALIDIGGGTTDIAIYKNGALRYTGVIPVGGDHVTKDIAKGLKTP--------- 249 (418)
T ss_pred eEEEehhhhhhhccCccc----HhcCeEEEEeCCCcEEEEEEECCEEEEEeeEeeCccHHHHHHHHHhCCC---------
Confidence 467899999987655443 477899999999999999976322111 111 5555555543221
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCCC------ceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 043979 76 SGNARALRRLRTAYERAKRTLSSTK------QTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKID 149 (443)
Q Consensus 76 ~~~~~~~~~L~~~~E~~K~~LS~~~------~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~ 149 (443)
+..||++|+.+.... +..+.++...+.. ..++||.++.+++++.++++...+++.|++.++.
T Consensus 250 ----------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~ 317 (418)
T COG0849 250 ----------FEEAERIKIKYGSALISLADDEETIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLP 317 (418)
T ss_pred ----------HHHHHHHHHHcCccccCcCCCcceEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCcc
Confidence 357888888865432 2346666554333 6789999999999999999999999999999987
Q ss_pred cCCcceEEEecCCcCcHHHHHHHHhhhCCc-cccc----------cCCcchhhhhhhhhHHHHH
Q 043979 150 KSQVHDVVLVSGSTRIPKVQQLLQDFFNGK-ELCK----------SINPDEVVAYGAAVQASIL 202 (443)
Q Consensus 150 ~~~id~ViLvGGssr~p~v~~~l~~~f~~~-~i~~----------~~~pdeaVa~GAa~~a~~l 202 (443)
..-...|+|+||++.+|.+.+..++.|+.. .+.. ..+|..+.|.|..+|++..
T Consensus 318 ~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 318 NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 666788999999999999999999999521 1111 3468899999999988753
No 33
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.16 E-value=4.5e-10 Score=111.88 Aligned_cols=169 Identities=15% Similarity=0.229 Sum_probs=112.1
Q ss_pred cccchhHHHHHHhccccCcC----CCCCcEEEEEEeCCceeEEEEEEEeCCeee------e----hHHHHHHHHHHHHHH
Q 043979 2 RIINEPAAATIVYGLDKKAS----RTGEKNVLIFDLGGGTFDVSLLMIEEGIFE------V----KDFDNRLVNNFVAEF 67 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~----~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~------v----~d~D~~l~~~l~~~~ 67 (443)
.++.||.||.+++....... ..+...++|+|+|+||+|++++. +..+. + .++.+.|.+++..+
T Consensus 157 ~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~--~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~- 233 (344)
T PRK13917 157 KVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQ--NLKRVEEESFVIPKGTIDVYKRIASHISKK- 233 (344)
T ss_pred EEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEe--CcEEcccccccccchHHHHHHHHHHHHHhh-
Confidence 57889999988887653311 11346799999999999999986 22221 1 16666666665432
Q ss_pred HhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 043979 68 KRKHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSK 147 (443)
Q Consensus 68 ~~~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~ 147 (443)
.++..+ +.. ++.+. |... .+.+. .+.. +.+ ++++.++++++++++.+.++..+.+
T Consensus 234 --~~~~~~--~~~---~ie~~-------l~~g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~-- 288 (344)
T PRK13917 234 --EEGASI--TPY---MLEKG-------LEYG---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN-- 288 (344)
T ss_pred --CCCCCC--CHH---HHHHH-------HHcC---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 223222 221 22111 1111 12221 1111 222 5678889999999999999888853
Q ss_pred CCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhC
Q 043979 148 IDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 148 ~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
..+++.|+|+||++++ +++.|++.|+. +....||..|.|+|...+|..+.+
T Consensus 289 --~~~~d~IiL~GGGA~l--l~~~lk~~f~~--~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 289 --INSFDRVIVTGGGANI--FFDSLSHWYSD--VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred --cCCCCEEEEECCcHHH--HHHHHHHHcCC--eEEcCChHHHHHHHHHHHHHHHhc
Confidence 3478999999999987 88999999964 466789999999999999987653
No 34
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.85 E-value=5.3e-08 Score=96.27 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=94.3
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeeh----------HHHHHHHHHHHHHHHhhc
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVK----------DFDNRLVNNFVAEFKRKH 71 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~----------d~D~~l~~~l~~~~~~~~ 71 (443)
.+++||.+|.++|.............++|+|+|++|+|+.++. +..+... ++-+.|.+ .+.+++
T Consensus 143 ~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~--~~~~~~~~s~s~~~G~~~~~~~I~~----~i~~~~ 216 (320)
T TIGR03739 143 LAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVAR--GMRLVQKRSGSVNGGMSDIYRLLAA----EISKDI 216 (320)
T ss_pred EEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehcc--CCEEcccccCCchhHHHHHHHHHHH----HHHhhc
Confidence 5789999998888664322223567799999999999998764 3322111 44444444 444445
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 043979 72 KIDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKIDKS 151 (443)
Q Consensus 72 ~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~ 151 (443)
+.+...+...+... |..... +.+ .+.. +.|+ +.++ ..+..++++...+.+.+. ...
T Consensus 217 g~~~~~~~~~i~~~----------l~~g~~--~~~----~gk~--~di~-~~~~-~~~~~~~~~v~~i~~~~~----~~~ 272 (320)
T TIGR03739 217 GTPAYRDIDRIDLA----------LRTGKQ--PRI----YQKP--VDIK-RCLE-LAETVAQQAVSTMMTWIG----APE 272 (320)
T ss_pred CCCCccCHHHHHHH----------HHhCCc--eee----ccee--cCch-HHHH-HHHHHHHHHHHHHHHhcc----cCC
Confidence 54421222111111 111100 011 1211 1222 2222 333344444444433331 124
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHH
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a 199 (443)
+++.|+|+||++. .+++.|++.|+...+....||..|.|+|-..++
T Consensus 273 ~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 273 SIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred cccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 6899999999987 668999999976566667899999999987665
No 35
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=98.65 E-value=5.7e-08 Score=98.12 Aligned_cols=176 Identities=20% Similarity=0.175 Sum_probs=109.5
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeC---Ceeeeh-----HHHHHHHHHHHHHHHhhccC
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEE---GIFEVK-----DFDNRLVNNFVAEFKRKHKI 73 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~---~~~~v~-----d~D~~l~~~l~~~~~~~~~~ 73 (443)
.++++|.+|+++|+. .+-+|+|+|+++++|+.+.-.. .....+ ++|+.|.+++..... ..
T Consensus 128 ~~~~~~~~a~~~~g~---------~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~ 195 (371)
T cd00012 128 YVAIQAVLSLYASGR---------TTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGY---EL 195 (371)
T ss_pred EEechHHHHHHhcCC---------CeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCC---Cc
Confidence 478899999988752 5899999999999998875211 111111 888888887754321 00
Q ss_pred CCccCHHHHHHHHHHHHHHHHHcCCCCc-----------------eeeeeccccCCceEEEEecHHHH---HHHHHHH--
Q 043979 74 DISGNARALRRLRTAYERAKRTLSSTKQ-----------------TTIEIDSLYEGIDFYATITRARF---EVLNMDL-- 131 (443)
Q Consensus 74 ~~~~~~~~~~~L~~~~E~~K~~LS~~~~-----------------~~i~i~~~~~~~~~~~~itr~ef---e~l~~~~-- 131 (443)
+.. .-...++.+|+.+..-.. ....+ .++ ..+.++.+.| |.++.|.
T Consensus 196 ~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~l---pd~--~~i~~~~er~~~~E~lF~p~~~ 263 (371)
T cd00012 196 NSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYEL---PDG--RTIKVGNERFRAPEILFNPSLI 263 (371)
T ss_pred cch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEEC---CCC--eEEEEChHHhhChHhcCChhhc
Confidence 111 122345566655432110 01111 122 2345665544 2334432
Q ss_pred ---HHHHHHHHHHHHHHcCCC--cCCcceEEEecCCcCcHHHHHHHHhhhCC---------ccccccCCcchhhhhhhhh
Q 043979 132 ---FRKCMEHVEKCLRNSKID--KSQVHDVVLVSGSTRIPKVQQLLQDFFNG---------KELCKSINPDEVVAYGAAV 197 (443)
Q Consensus 132 ---~~~i~~~i~~~l~~a~~~--~~~id~ViLvGGssr~p~v~~~l~~~f~~---------~~i~~~~~pdeaVa~GAa~ 197 (443)
...+.+.|.+++..+..+ ..-++.|+|+||+|++|.+.++|++.+.. ..+....+|..++-+||++
T Consensus 264 ~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si 343 (371)
T cd00012 264 GSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSI 343 (371)
T ss_pred CCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchh
Confidence 236778888888776432 23468899999999999999999987731 1234556889999999999
Q ss_pred HHHH
Q 043979 198 QASI 201 (443)
Q Consensus 198 ~a~~ 201 (443)
+|..
T Consensus 344 ~as~ 347 (371)
T cd00012 344 LASL 347 (371)
T ss_pred hcCc
Confidence 9864
No 36
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=98.50 E-value=1.3e-07 Score=83.99 Aligned_cols=147 Identities=22% Similarity=0.292 Sum_probs=93.7
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCeeeehHHHHHHHHHHHHHHHhhccCCCccCHH
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIFEVKDFDNRLVNNFVAEFKRKHKIDISGNAR 80 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~d~D~~l~~~l~~~~~~~~~~~~~~~~~ 80 (443)
+..++||||||.-..++ .-.|+|+||||+-+|+++-.+-.|.- .+-.--+++.+.. .-
T Consensus 124 l~vlDEPTAaa~vL~l~---------dg~VVDiGGGTTGIsi~kkGkViy~A------------DEpTGGtHmtLvl-AG 181 (277)
T COG4820 124 LHVLDEPTAAADVLQLD---------DGGVVDIGGGTTGISIVKKGKVIYSA------------DEPTGGTHMTLVL-AG 181 (277)
T ss_pred eeecCCchhHHHHhccC---------CCcEEEeCCCcceeEEEEcCcEEEec------------cCCCCceeEEEEE-ec
Confidence 35789999998644432 34689999999999998843322210 0000000000000 00
Q ss_pred HHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEec
Q 043979 81 ALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVS 160 (443)
Q Consensus 81 ~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvG 160 (443)
.+.--+++||..|+.--.. +|.=..+.|.+++..+.+++-++..+ +..+.|+|
T Consensus 182 ~ygi~~EeAE~~Kr~~k~~----------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvG 234 (277)
T COG4820 182 NYGISLEEAEQYKRGHKKG----------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVG 234 (277)
T ss_pred ccCcCHhHHHHhhhccccc----------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEec
Confidence 0111234566655532111 11112467899999999999888765 67899999
Q ss_pred CCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhh
Q 043979 161 GSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAV 197 (443)
Q Consensus 161 Gssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~ 197 (443)
|+|.-|.+.+..++.| +..+..+..|....-.|-|+
T Consensus 235 Gac~~~g~e~~Fe~~l-~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 235 GACMQPGVEELFEKQL-ALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred ccccCccHHHHHHHHh-ccccccCCCcceechhhhhh
Confidence 9999999999999999 67888888888777666664
No 37
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.49 E-value=7.8e-07 Score=87.85 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=86.7
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCe---------eeehHHHHHHHHHHHHHHHhhcc
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGI---------FEVKDFDNRLVNNFVAEFKRKHK 72 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~---------~~v~d~D~~l~~~l~~~~~~~~~ 72 (443)
.+++||.||.+.+.... .+...+||+|+||+|+|++++.-.-.. .-+.++-..+.+.+.. .+
T Consensus 144 ~V~PQ~~~A~~~~~~~~----~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~-----~~ 214 (318)
T PF06406_consen 144 EVFPQSVGAVFDALMDL----DEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS-----AG 214 (318)
T ss_dssp EEEESSHHHHHHHHHTS-----TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-------S
T ss_pred EEEcccHHHHHHHHHhh----cccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH-----hc
Confidence 57889999998876552 235689999999999999998621000 1111444444443332 11
Q ss_pred CCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Q 043979 73 IDISGNARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKIDKSQ 152 (443)
Q Consensus 73 ~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~ 152 (443)
.. .+......+.+... -+..++ ......+ ..+++.+.++..++++.+.|.+.+.+ ..+
T Consensus 215 ~~--~s~~~~~~ii~~~~-~~~~~~----------~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~----~~~ 272 (318)
T PF06406_consen 215 ID--TSELQIDDIIRNRK-DKGYLR----------QVINDED-----VIDDVSEVIEEAVEELINRILRELGD----FSD 272 (318)
T ss_dssp BH--HHHHHHHHHHHTTT--HHHHH----------HHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT----S-S
T ss_pred CC--CcHHHHHHHHHhhh-ccceec----------ccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh----hcc
Confidence 10 01111111111000 000000 0001111 13455555666666666655555532 346
Q ss_pred cceEEEecCCcCcHHHHHHHHhhhC--CccccccCCcchhhhhhhh
Q 043979 153 VHDVVLVSGSTRIPKVQQLLQDFFN--GKELCKSINPDEVVAYGAA 196 (443)
Q Consensus 153 id~ViLvGGssr~p~v~~~l~~~f~--~~~i~~~~~pdeaVa~GAa 196 (443)
++.|+||||++. .+.+.|++.|+ ...+...-||+.|-|+|-+
T Consensus 273 ~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 273 IDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred CCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 899999999975 78899999985 3567788899999999954
No 38
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=98.42 E-value=7.2e-07 Score=90.15 Aligned_cols=175 Identities=21% Similarity=0.233 Sum_probs=102.4
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCee----eeh-----HHHHHHHHHHHHHHHhhcc
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIF----EVK-----DFDNRLVNNFVAEFKRKHK 72 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~----~v~-----d~D~~l~~~l~~~~~~~~~ 72 (443)
-++++|.||+++++ ..+.||+|+|+++++|+.+. ++..+ ..+ ++|+.|.+++...- ..
T Consensus 128 ~~~~~~~~a~~~~g---------~~~~lVVDiG~~~t~v~pv~-~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~---~~ 194 (373)
T smart00268 128 YIAIQAVLSLYASG---------RTTGLVIDSGDGVTHVVPVV-DGYVLPHAIKRIDIAGRDLTDYLKELLSERG---YQ 194 (373)
T ss_pred EEeccHHHHHHhCC---------CCEEEEEecCCCcceEEEEE-CCEEchhhheeccCcHHHHHHHHHHHHHhcC---CC
Confidence 46889999998875 35899999999999999876 21111 111 78888877765410 00
Q ss_pred CCCccCHHHHHHHHHHHHHHHHHcCCC-------------------CceeeeeccccCCceEEEEecHHHH---HHHHHH
Q 043979 73 IDISGNARALRRLRTAYERAKRTLSST-------------------KQTTIEIDSLYEGIDFYATITRARF---EVLNMD 130 (443)
Q Consensus 73 ~~~~~~~~~~~~L~~~~E~~K~~LS~~-------------------~~~~i~i~~~~~~~~~~~~itr~ef---e~l~~~ 130 (443)
.+.. .-...++.+|+.+..- ......+ .++..+ .+..+.| |.++.|
T Consensus 195 ~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l---pdg~~~--~~~~er~~~~E~lf~p 262 (373)
T smart00268 195 FNSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL---PDGNTI--KVGNERFRIPEILFKP 262 (373)
T ss_pred CCcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC---CCCCEE--EEChHHeeCchhcCCc
Confidence 1111 1123344555443211 0011111 233333 3333333 233333
Q ss_pred H-----HHHHHHHHHHHHHHcCCC--cCCcceEEEecCCcCcHHHHHHHHhhhCC-------ccccccCCcchhhhhhhh
Q 043979 131 L-----FRKCMEHVEKCLRNSKID--KSQVHDVVLVSGSTRIPKVQQLLQDFFNG-------KELCKSINPDEVVAYGAA 196 (443)
Q Consensus 131 ~-----~~~i~~~i~~~l~~a~~~--~~~id~ViLvGGssr~p~v~~~l~~~f~~-------~~i~~~~~pdeaVa~GAa 196 (443)
- ...+.+.|.+++..+..+ ..-.+.|+|+||+|++|.+.++|.+.+.. ..+..+.++..++=.||+
T Consensus 263 ~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~s 342 (373)
T smart00268 263 ELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGS 342 (373)
T ss_pred hhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcc
Confidence 2 236677777777765422 22246799999999999999999887621 123444566788888988
Q ss_pred hHHHH
Q 043979 197 VQASI 201 (443)
Q Consensus 197 ~~a~~ 201 (443)
++|..
T Consensus 343 ilas~ 347 (373)
T smart00268 343 ILASL 347 (373)
T ss_pred cccCc
Confidence 88753
No 39
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.25 E-value=1.6e-05 Score=79.48 Aligned_cols=109 Identities=11% Similarity=0.168 Sum_probs=70.9
Q ss_pred EEEEEEeCCceeEEEEEEEeCCeeee---h-----HHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHHcCC
Q 043979 27 NVLIFDLGGGTFDVSLLMIEEGIFEV---K-----DFDNRLVNNFVAEFKRKHKIDISGNARALRRLRTAYERAKRTLSS 98 (443)
Q Consensus 27 ~vlV~D~GggT~Dvsv~~~~~~~~~v---~-----d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~~K~~LS~ 98 (443)
.++++|+|++|+++++++ ++.+.. + ++++.|.+ .++++ ...||+.|.....
T Consensus 189 ~~~lvdiG~~~t~l~i~~--~g~~~~~r~i~~G~~~i~~~i~~--------~~~~~-----------~~~Ae~~k~~~~~ 247 (348)
T TIGR01175 189 DAALVDIGATSSTLNLLH--PGRMLFTREVPFGTRQLTSELSR--------AYGLN-----------PEEAGEAKQQGGL 247 (348)
T ss_pred eEEEEEECCCcEEEEEEE--CCeEEEEEEeechHHHHHHHHHH--------HcCCC-----------HHHHHHHHhcCCC
Confidence 499999999999999985 332222 1 44544432 22221 2567777764321
Q ss_pred CCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcCCcceEEEecCCcCcHHHHHHHHhhh
Q 043979 99 TKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNS--KIDKSQVHDVVLVSGSTRIPKVQQLLQDFF 176 (443)
Q Consensus 99 ~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a--~~~~~~id~ViLvGGssr~p~v~~~l~~~f 176 (443)
.. . . -.+.+++.++++...|.+.++-. ......++.|+|+||.+++|.+.+.+++.|
T Consensus 248 ~~-----------~--~--------~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l 306 (348)
T TIGR01175 248 PL-----------L--Y--------DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL 306 (348)
T ss_pred CC-----------c--h--------hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH
Confidence 10 0 0 12356677777777777777532 222335899999999999999999999999
Q ss_pred C
Q 043979 177 N 177 (443)
Q Consensus 177 ~ 177 (443)
+
T Consensus 307 ~ 307 (348)
T TIGR01175 307 G 307 (348)
T ss_pred C
Confidence 4
No 40
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.25 E-value=1.3e-05 Score=80.02 Aligned_cols=132 Identities=16% Similarity=0.230 Sum_probs=79.5
Q ss_pred CcEEEEEEeCCceeEEEEEEEeCCeeeeh--------HHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHHc
Q 043979 25 EKNVLIFDLGGGTFDVSLLMIEEGIFEVK--------DFDNRLVNNFVAEFKRKHKIDISGNARALRRLRTAYERAKRTL 96 (443)
Q Consensus 25 ~~~vlV~D~GggT~Dvsv~~~~~~~~~v~--------d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~~K~~L 96 (443)
...++++|+|+.++.+++++ ++.+... ++++.|++.+.-. ..+||..|..-
T Consensus 179 ~~~~~lvdiG~~~t~~~i~~--~g~~~f~R~i~~G~~~l~~~i~~~~~i~-------------------~~~Ae~~k~~~ 237 (340)
T PF11104_consen 179 AETVALVDIGASSTTVIIFQ--NGKPIFSRSIPIGGNDLTEAIARELGID-------------------FEEAEELKRSG 237 (340)
T ss_dssp T-EEEEEEE-SS-EEEEEEE--TTEEEEEEEES-SHHHHHHHHHHHTT---------------------HHHHHHHHHHT
T ss_pred cceEEEEEecCCeEEEEEEE--CCEEEEEEEEeeCHHHHHHHHHHhcCCC-------------------HHHHHHHHhcC
Confidence 46899999999999999865 3333222 6777776543211 13556666542
Q ss_pred CCCCceeeeeccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCcCCcceEEEecCCcCcHHHHHHHHh
Q 043979 97 SSTKQTTIEIDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRN--SKIDKSQVHDVVLVSGSTRIPKVQQLLQD 174 (443)
Q Consensus 97 S~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~--a~~~~~~id~ViLvGGssr~p~v~~~l~~ 174 (443)
+-.. +...+.+.+.++++...|++.++- +......|+.|+|+||++++|.+.+.|++
T Consensus 238 ~l~~---------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~ 296 (340)
T PF11104_consen 238 GLPE---------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSE 296 (340)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHH
T ss_pred CCCc---------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHH
Confidence 1100 233456677777777777777762 23334579999999999999999999999
Q ss_pred hhCCccc---------cccC----------CcchhhhhhhhhHH
Q 043979 175 FFNGKEL---------CKSI----------NPDEVVAYGAAVQA 199 (443)
Q Consensus 175 ~f~~~~i---------~~~~----------~pdeaVa~GAa~~a 199 (443)
.|+ .++ ..+. .|+.+||.|.|+..
T Consensus 297 ~l~-~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 297 ELG-IPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp HHT-SEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHC-CceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 994 221 1111 26678999999864
No 41
>PTZ00280 Actin-related protein 3; Provisional
Probab=98.13 E-value=2e-05 Score=80.87 Aligned_cols=166 Identities=17% Similarity=0.137 Sum_probs=94.8
Q ss_pred cccchhHHHHHHhccccCcC-CCCCcEEEEEEeCCceeEEEEEEE----eCCeeeeh----HHHHHHHHHHHHHHHhhcc
Q 043979 2 RIINEPAAATIVYGLDKKAS-RTGEKNVLIFDLGGGTFDVSLLMI----EEGIFEVK----DFDNRLVNNFVAEFKRKHK 72 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~-~~~~~~vlV~D~GggT~Dvsv~~~----~~~~~~v~----d~D~~l~~~l~~~~~~~~~ 72 (443)
-+.++|.+|++++....... .....+-||||+|.|+++++.+.- ......+- ++++.|.+.|.+. +
T Consensus 135 ~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~-----~ 209 (414)
T PTZ00280 135 YIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRER-----G 209 (414)
T ss_pred EEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHc-----C
Confidence 35678888887763322110 012346699999999999987642 11111111 7777777776442 1
Q ss_pred CCCccCHHHHHHHHHHHHHHHHHcCCCC-----------------ceeeeeccccCCceEEEEecHHHHH---HHHHHHH
Q 043979 73 IDISGNARALRRLRTAYERAKRTLSSTK-----------------QTTIEIDSLYEGIDFYATITRARFE---VLNMDLF 132 (443)
Q Consensus 73 ~~~~~~~~~~~~L~~~~E~~K~~LS~~~-----------------~~~i~i~~~~~~~~~~~~itr~efe---~l~~~~~ 132 (443)
.++... ..+..++.+|+.++--. ...+.+++...+....+.|..+.|. -++.|-+
T Consensus 210 ~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~ 284 (414)
T PTZ00280 210 EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEI 284 (414)
T ss_pred CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhh
Confidence 122111 11233555666543210 0112333222344456778877773 3555532
Q ss_pred ------HHHHHHHHHHHHHcCCC--cCCcceEEEecCCcCcHHHHHHHHhhhC
Q 043979 133 ------RKCMEHVEKCLRNSKID--KSQVHDVVLVSGSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 133 ------~~i~~~i~~~l~~a~~~--~~~id~ViLvGGssr~p~v~~~l~~~f~ 177 (443)
..+.+.|.+++.++..+ ..-.+.|+|+||+|.+|.+.++|++.+.
T Consensus 285 ~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 285 FSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred cCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 14567777777766432 2235779999999999999999998773
No 42
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=98.07 E-value=1.9e-05 Score=80.34 Aligned_cols=184 Identities=20% Similarity=0.238 Sum_probs=102.9
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeCCee-----eeh-----HHHHHHHHHHHHHHHh--
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEEGIF-----EVK-----DFDNRLVNNFVAEFKR-- 69 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~-----~v~-----d~D~~l~~~l~~~~~~-- 69 (443)
-++++|.+|+++++. .+-||||+|.+.+.|+-|. +|.. ... +++..|.+.|.++-..
T Consensus 127 ~~~~~~~~a~~~~g~---------~tglVVD~G~~~t~v~pV~--dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~ 195 (393)
T PF00022_consen 127 YFIPSPLLALYASGR---------TTGLVVDIGYSSTSVVPVV--DGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQIN 195 (393)
T ss_dssp EEEEHHHHHHHHTTB---------SSEEEEEESSS-EEEEEEE--TTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--
T ss_pred eeeeccccccccccc---------ccccccccceeeeeeeeee--eccccccccccccccHHHHHHHHHHHHHhhccccc
Confidence 467888888887753 3579999999999887763 3321 111 7777777777663100
Q ss_pred -hccCCCc----cCHHHHHHHHHHHHHHHHHc---------------CCCCceeeeeccccCCceEEEEecHHHHHHHHH
Q 043979 70 -KHKIDIS----GNARALRRLRTAYERAKRTL---------------SSTKQTTIEIDSLYEGIDFYATITRARFEVLNM 129 (443)
Q Consensus 70 -~~~~~~~----~~~~~~~~L~~~~E~~K~~L---------------S~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~ 129 (443)
.+..... ........-...++.+|+.+ +........++ ++. .+.+..+.| .+.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~--~i~~~~er~-~~~E 269 (393)
T PF00022_consen 196 PSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ--TIILGKERF-RIPE 269 (393)
T ss_dssp GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS--EEEESTHHH-HHHH
T ss_pred cccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc--ccccccccc-cccc
Confidence 0000000 00000011112223333322 11222333333 343 456665555 2233
Q ss_pred HHHH----------------HHHHHHHHHHHHcCCCcC--CcceEEEecCCcCcHHHHHHHHhhhCC-------cccccc
Q 043979 130 DLFR----------------KCMEHVEKCLRNSKIDKS--QVHDVVLVSGSTRIPKVQQLLQDFFNG-------KELCKS 184 (443)
Q Consensus 130 ~~~~----------------~i~~~i~~~l~~a~~~~~--~id~ViLvGGssr~p~v~~~l~~~f~~-------~~i~~~ 184 (443)
.+|+ .+.+.|.+++..+..+.. -.+.|+|+||+|++|.+.++|.+.+.. .++..+
T Consensus 270 ~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~ 349 (393)
T PF00022_consen 270 ILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAP 349 (393)
T ss_dssp TTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--
T ss_pred cccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccC
Confidence 3332 467778888877653322 257899999999999999999886632 134444
Q ss_pred C-CcchhhhhhhhhHHHHH
Q 043979 185 I-NPDEVVAYGAAVQASIL 202 (443)
Q Consensus 185 ~-~pdeaVa~GAa~~a~~l 202 (443)
. +|..++=+||+++|..-
T Consensus 350 ~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 350 PSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp T-TTTSHHHHHHHHHHTSG
T ss_pred chhhhhcccccceeeeccc
Confidence 5 89999999999988643
No 43
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.04 E-value=2.1e-05 Score=74.88 Aligned_cols=68 Identities=22% Similarity=0.332 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcc-eEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhH
Q 043979 125 EVLNMDLFRKCMEHVEKCLRNSKIDKSQVH-DVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQ 198 (443)
Q Consensus 125 e~l~~~~~~~i~~~i~~~l~~a~~~~~~id-~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~ 198 (443)
++++..+++.+...+.+.+...+ ++ .|+|.||.+++|++.+.+++.+ +.++..+.+|..+.|+|||++
T Consensus 180 ~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 180 EDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 45666677777666666665443 44 7999999999999999999999 678888999999999999973
No 44
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.02 E-value=5.9e-05 Score=70.80 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=36.9
Q ss_pred cCCcceEEEecCCcCcHHHHHHHHhhhCC-------ccccccCCcchhhhhhhhhH
Q 043979 150 KSQVHDVVLVSGSTRIPKVQQLLQDFFNG-------KELCKSINPDEVVAYGAAVQ 198 (443)
Q Consensus 150 ~~~id~ViLvGGssr~p~v~~~l~~~f~~-------~~i~~~~~pdeaVa~GAa~~ 198 (443)
..+|+.|+|||||+.-.-|-+++.+.+.. -.+.-..-|..|||.|.++.
T Consensus 273 iR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvls 328 (332)
T PF08841_consen 273 IRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLS 328 (332)
T ss_dssp CCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHH
T ss_pred cccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHh
Confidence 35799999999999988888888887732 24556678999999999864
No 45
>PTZ00281 actin; Provisional
Probab=97.69 E-value=0.00013 Score=73.76 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=97.1
Q ss_pred ccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEeC---Ceeeeh-----HHHHHHHHHHHHHHHhhccCC
Q 043979 3 IINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIEE---GIFEVK-----DFDNRLVNNFVAEFKRKHKID 74 (443)
Q Consensus 3 li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~---~~~~v~-----d~D~~l~~~l~~~~~~~~~~~ 74 (443)
+++.|.+|+++++ ..+-+|+|+|.+.+.|+-+.-.- .....+ ++++.|.+.|... +..
T Consensus 135 ~~~~~~ls~ya~g---------~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~ 200 (376)
T PTZ00281 135 VAIQAVLSLYASG---------RTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTER-----GYS 200 (376)
T ss_pred eeccHHHHHHhcC---------CceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhc-----CCC
Confidence 5567777776553 24679999999999987544211 111111 5666655554331 112
Q ss_pred CccCHHHHHHHHHHHHHHHHHcCCCC----------------ceeeeeccccCCceEEEEecHHHH---HHHHHHHH---
Q 043979 75 ISGNARALRRLRTAYERAKRTLSSTK----------------QTTIEIDSLYEGIDFYATITRARF---EVLNMDLF--- 132 (443)
Q Consensus 75 ~~~~~~~~~~L~~~~E~~K~~LS~~~----------------~~~i~i~~~~~~~~~~~~itr~ef---e~l~~~~~--- 132 (443)
+.. .. -...++.+|+.++--. .....+ -+|.. ++|..+.| |.+++|-+
T Consensus 201 ~~~-~~----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~L---Pdg~~--i~i~~er~~~~E~LF~P~~~~~ 270 (376)
T PTZ00281 201 FTT-TA----EREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYEL---PDGQV--ITIGNERFRCPEALFQPSFLGM 270 (376)
T ss_pred CCc-HH----HHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEEC---CCCCE--EEeeHHHeeCcccccChhhcCC
Confidence 211 10 0123455555543110 011222 23333 45555544 34455432
Q ss_pred --HHHHHHHHHHHHHcCCCc--CCcceEEEecCCcCcHHHHHHHHhhhCC-------ccccccCCcchhhhhhhhhHHH
Q 043979 133 --RKCMEHVEKCLRNSKIDK--SQVHDVVLVSGSTRIPKVQQLLQDFFNG-------KELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 133 --~~i~~~i~~~l~~a~~~~--~~id~ViLvGGssr~p~v~~~l~~~f~~-------~~i~~~~~pdeaVa~GAa~~a~ 200 (443)
..+.+.|.+++.++..+. .-.+.|+|+||+|.+|.+.++|++.+.. .++..+.++..++=+||+++|.
T Consensus 271 ~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 271 ESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred CCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 145566677766654321 2256799999999999999999876621 1244445677888899998886
No 46
>PTZ00004 actin-2; Provisional
Probab=97.65 E-value=0.00019 Score=72.73 Aligned_cols=175 Identities=15% Similarity=0.169 Sum_probs=98.4
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEEe---CCeeeeh-----HHHHHHHHHHHHHHHhhccC
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMIE---EGIFEVK-----DFDNRLVNNFVAEFKRKHKI 73 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~---~~~~~v~-----d~D~~l~~~l~~~~~~~~~~ 73 (443)
.++++|.+|+++++ ..+-+|+|+|.+.++|+-+.-. ......+ ++++.|.+.+... +.
T Consensus 134 ~~~~~~~ls~ya~g---------~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~ 199 (378)
T PTZ00004 134 YVAIQAVLSLYASG---------RTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHER-----GT 199 (378)
T ss_pred EeeccHHHHHHhcC---------CceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhc-----CC
Confidence 35677788877653 2467999999999999766411 1111112 6666666655321 11
Q ss_pred CCccCHHHHHHHHHHHHHHHHHcCCC---------------C--ceeeeeccccCCceEEEEecHHHH---HHHHHHH--
Q 043979 74 DISGNARALRRLRTAYERAKRTLSST---------------K--QTTIEIDSLYEGIDFYATITRARF---EVLNMDL-- 131 (443)
Q Consensus 74 ~~~~~~~~~~~L~~~~E~~K~~LS~~---------------~--~~~i~i~~~~~~~~~~~~itr~ef---e~l~~~~-- 131 (443)
.+... . -...++.+|+.++.- . .....++ +|.. +.+..+.| |-+++|-
T Consensus 200 ~~~~~--~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP---dg~~--i~l~~er~~~~E~LF~P~~~ 269 (378)
T PTZ00004 200 TFTTT--A---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP---DGTI--ITVGSERFRCPEALFQPSLI 269 (378)
T ss_pred CCCcH--H---HHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC---CCCE--EEEcHHHeeCcccccChhhc
Confidence 11111 1 112234444443211 0 1122222 3433 45555554 3455553
Q ss_pred ----HHHHHHHHHHHHHHcCCC--cCCcceEEEecCCcCcHHHHHHHHhhhCC-------ccccccCCcchhhhhhhhhH
Q 043979 132 ----FRKCMEHVEKCLRNSKID--KSQVHDVVLVSGSTRIPKVQQLLQDFFNG-------KELCKSINPDEVVAYGAAVQ 198 (443)
Q Consensus 132 ----~~~i~~~i~~~l~~a~~~--~~~id~ViLvGGssr~p~v~~~l~~~f~~-------~~i~~~~~pdeaVa~GAa~~ 198 (443)
...+.+.|.+++.++..+ +.-...|+|+||+|.+|.+.++|+..+.. .++..+.++..++=+||+++
T Consensus 270 ~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsil 349 (378)
T PTZ00004 270 GKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSIL 349 (378)
T ss_pred CccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccc
Confidence 224556677777766432 22357799999999999999999876621 12344556778888888888
Q ss_pred HH
Q 043979 199 AS 200 (443)
Q Consensus 199 a~ 200 (443)
|.
T Consensus 350 as 351 (378)
T PTZ00004 350 SS 351 (378)
T ss_pred cC
Confidence 75
No 47
>PTZ00452 actin; Provisional
Probab=97.48 E-value=0.00065 Score=68.72 Aligned_cols=174 Identities=17% Similarity=0.238 Sum_probs=96.0
Q ss_pred ccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEE----eCCeeeeh----HHHHHHHHHHHHHHHhhccCC
Q 043979 3 IINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMI----EEGIFEVK----DFDNRLVNNFVAEFKRKHKID 74 (443)
Q Consensus 3 li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~----~~~~~~v~----d~D~~l~~~l~~~~~~~~~~~ 74 (443)
+.+.|.+++++++ ..+-||+|+|.+.++|+-+.- .......- ++++.|.+.|.+ .+..
T Consensus 134 ~~~~~~lslya~g---------~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~-----~~~~ 199 (375)
T PTZ00452 134 ISNEAVLSLYTSG---------KTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQE-----LGYS 199 (375)
T ss_pred EechHHHHHHHCC---------CceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHh-----cCCC
Confidence 4566677776543 246799999999999876541 11111111 566655555432 1212
Q ss_pred CccCHHHHHHHHHHHHHHHHHcCCCC----------------ceeeeeccccCCceEEEEecHHHH---HHHHHHHH---
Q 043979 75 ISGNARALRRLRTAYERAKRTLSSTK----------------QTTIEIDSLYEGIDFYATITRARF---EVLNMDLF--- 132 (443)
Q Consensus 75 ~~~~~~~~~~L~~~~E~~K~~LS~~~----------------~~~i~i~~~~~~~~~~~~itr~ef---e~l~~~~~--- 132 (443)
+... .. +..++.+|+.++--. .....++ +|. .+++..+.| |-+++|-+
T Consensus 200 ~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP---Dg~--~i~l~~er~~~~E~LF~P~~~g~ 269 (375)
T PTZ00452 200 LTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP---DGN--ILTIKSQKFRCSEILFQPKLIGL 269 (375)
T ss_pred CCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC---CCC--EEEeehHHhcCcccccChhhcCC
Confidence 2111 00 112334444433110 1112222 343 345666666 33444432
Q ss_pred --HHHHHHHHHHHHHcCCC--cCCcceEEEecCCcCcHHHHHHHHhhhCC-------ccccccCCcchhhhhhhhhHHH
Q 043979 133 --RKCMEHVEKCLRNSKID--KSQVHDVVLVSGSTRIPKVQQLLQDFFNG-------KELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 133 --~~i~~~i~~~l~~a~~~--~~~id~ViLvGGssr~p~v~~~l~~~f~~-------~~i~~~~~pdeaVa~GAa~~a~ 200 (443)
..+.+.|.+.+..+..+ ..-.+.|+|+||+|.+|.+.++|++.+.. .++..+.++..++=+|++++|.
T Consensus 270 ~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 270 EVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred CCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 23556666777665422 23357899999999999999999876621 1233445566788888888875
No 48
>PTZ00466 actin-like protein; Provisional
Probab=97.43 E-value=0.00097 Score=67.55 Aligned_cols=174 Identities=15% Similarity=0.127 Sum_probs=96.2
Q ss_pred ccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEE----eCCeeeeh----HHHHHHHHHHHHHHHhhccCC
Q 043979 3 IINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMI----EEGIFEVK----DFDNRLVNNFVAEFKRKHKID 74 (443)
Q Consensus 3 li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~----~~~~~~v~----d~D~~l~~~l~~~~~~~~~~~ 74 (443)
+.+.|.+|+++++ ..+-+|+|+|.+.+.|+-+.- .......- ++++.|.+.+.+ .+..
T Consensus 140 ~~~~~~lsl~a~g---------~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~-----~~~~ 205 (380)
T PTZ00466 140 ISIQAILSLYSCG---------KTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRK-----NGHL 205 (380)
T ss_pred EecchHHHHHhcC---------CceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHh-----cCCC
Confidence 4567777776653 247899999999999866541 11111111 666655555432 1111
Q ss_pred CccCHHHHHHHHHHHHHHHHHcCCC-------------C--ceeeeeccccCCceEEEEecHHHH---HHHHHHHH----
Q 043979 75 ISGNARALRRLRTAYERAKRTLSST-------------K--QTTIEIDSLYEGIDFYATITRARF---EVLNMDLF---- 132 (443)
Q Consensus 75 ~~~~~~~~~~L~~~~E~~K~~LS~~-------------~--~~~i~i~~~~~~~~~~~~itr~ef---e~l~~~~~---- 132 (443)
... . .-+..++.+|+.++-- . .....++ +|. .+.|..+.| |-+++|-+
T Consensus 206 ~~~-~----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LP---dg~--~i~l~~er~~~~E~LF~P~~~g~~ 275 (380)
T PTZ00466 206 FNT-S----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILP---DGS--QILIGSERYRAPEVLFNPSILGLE 275 (380)
T ss_pred CCc-H----HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECC---CCc--EEEEchHHhcCcccccCccccCCC
Confidence 111 0 1122344455443210 0 0112222 343 345666655 33444422
Q ss_pred -HHHHHHHHHHHHHcCCC--cCCcceEEEecCCcCcHHHHHHHHhhhCC-------ccccccCCcchhhhhhhhhHHH
Q 043979 133 -RKCMEHVEKCLRNSKID--KSQVHDVVLVSGSTRIPKVQQLLQDFFNG-------KELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 133 -~~i~~~i~~~l~~a~~~--~~~id~ViLvGGssr~p~v~~~l~~~f~~-------~~i~~~~~pdeaVa~GAa~~a~ 200 (443)
..+.+.|.+.+.++..+ +.-...|+|+||+|.+|.+.++|++.+.. .++..+.++..++=+||+++|.
T Consensus 276 ~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 276 YLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred CCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 13456666666665432 22357899999999999999999887622 1234445667788889988875
No 49
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=97.32 E-value=0.0072 Score=66.54 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=62.5
Q ss_pred eEEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCc-----------
Q 043979 114 DFYATITRARFEVLNM---DLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGK----------- 179 (443)
Q Consensus 114 ~~~~~itr~efe~l~~---~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~----------- 179 (443)
++.+.|+..++...+- -.+.+++..+-+++..- +.|.++|+|--||+|.||..+++..+-.
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 4557899999888764 55555555555665543 4789999999999999999999987411
Q ss_pred --------cccccCCcchhhhhhhhhHHHHHh
Q 043979 180 --------ELCKSINPDEVVAYGAAVQASILS 203 (443)
Q Consensus 180 --------~i~~~~~pdeaVa~GAa~~a~~l~ 203 (443)
+...--||...||.||.+++....
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 112445899999999988775443
No 50
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.29 E-value=0.0032 Score=61.92 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHH
Q 043979 125 EVLNMDLFRKCMEHVEK-CLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASI 201 (443)
Q Consensus 125 e~l~~~~~~~i~~~i~~-~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~ 201 (443)
|+++..+...+..-+-. +++.-.+. +. |+|+||.+....+.+++++.+ +.++..+.+|..+-|+|||++|..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~--~~--iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIE--EP--IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC--CC--EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhh
Confidence 55555555555444433 44443322 22 999999999999999999999 689999999999999999999863
No 51
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.28 E-value=0.0032 Score=62.67 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=41.3
Q ss_pred ceEEEecCCcCcHHHHHHHHhhhC----CccccccCCcchhhhhhhhhHH
Q 043979 154 HDVVLVSGSTRIPKVQQLLQDFFN----GKELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 154 d~ViLvGGssr~p~v~~~l~~~f~----~~~i~~~~~pdeaVa~GAa~~a 199 (443)
+.|+|.||.++.+.+.+.|++.++ +.++..+.+|+.+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 479999999999999999999994 4567889999999999999975
No 52
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.19 E-value=0.00073 Score=61.71 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-cCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHH
Q 043979 124 FEVLNMDLFRKCMEHVEKCLRNSKID-KSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASI 201 (443)
Q Consensus 124 fe~l~~~~~~~i~~~i~~~l~~a~~~-~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~ 201 (443)
..+++.-+++.+.-.++..++...-. ...++.|+++||.++.|.+.+++.+.| +.++....+ .++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 44555555555555555544443111 234899999999999999999999999 566655544 89999999999874
No 53
>PRK13317 pantothenate kinase; Provisional
Probab=97.12 E-value=0.011 Score=57.14 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=42.9
Q ss_pred CcceEEEec-CCcCcHHHHHHHHhhhC--CccccccCCcchhhhhhhhhHHH
Q 043979 152 QVHDVVLVS-GSTRIPKVQQLLQDFFN--GKELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 152 ~id~ViLvG-Gssr~p~v~~~l~~~f~--~~~i~~~~~pdeaVa~GAa~~a~ 200 (443)
.++.|+++| |.++.|.+++.+.+.+. +.++..+.+|..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 367899999 79999999999998873 46788899999999999999875
No 54
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.99 E-value=0.0024 Score=61.58 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=41.3
Q ss_pred ceEEEecCCcCcHHHHHHHHhhhCCcccc-ccCCcchhhhhhhhhHHHH
Q 043979 154 HDVVLVSGSTRIPKVQQLLQDFFNGKELC-KSINPDEVVAYGAAVQASI 201 (443)
Q Consensus 154 d~ViLvGGssr~p~v~~~l~~~f~~~~i~-~~~~pdeaVa~GAa~~a~~ 201 (443)
+.|+|.||.++.|.+++.+++.+ +.++. .+.+|+.+-|+|||++|..
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 45899999999999999999999 45655 5778999999999999964
No 55
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.73 E-value=0.0052 Score=58.42 Aligned_cols=45 Identities=18% Similarity=0.091 Sum_probs=38.5
Q ss_pred eEEEecCCcCcHHHHHHHHhhhCCcc----ccccCCcchhhhhhhhhHH
Q 043979 155 DVVLVSGSTRIPKVQQLLQDFFNGKE----LCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 155 ~ViLvGGssr~p~v~~~l~~~f~~~~----i~~~~~pdeaVa~GAa~~a 199 (443)
.|+|.||.++.+.+.+.+++.+++.+ +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999985433 5556789999999999875
No 56
>PRK15027 xylulokinase; Provisional
Probab=96.53 E-value=0.0068 Score=63.52 Aligned_cols=52 Identities=31% Similarity=0.339 Sum_probs=45.2
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhC
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
.++.|+++||.++++...+++.+.| +.++....+.+++.++|||+.|+.-.|
T Consensus 386 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G 437 (484)
T PRK15027 386 KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_pred CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcC
Confidence 4789999999999999999999999 677766667777899999999986654
No 57
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.49 E-value=0.008 Score=63.89 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=63.8
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhh
Q 043979 118 TITRARFEVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAV 197 (443)
Q Consensus 118 ~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~ 197 (443)
.-+|..+..++..+++.+.-.++.+++...-....++.|.++||.++++...+.+.+.| +.++....+ .++.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYV-NEAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecCh-hHHHHHHHHH
Confidence 33577777888888887776666655543211234789999999999999999999999 577765544 4688999999
Q ss_pred HHHHHhC
Q 043979 198 QASILSG 204 (443)
Q Consensus 198 ~a~~l~~ 204 (443)
.|+.-.|
T Consensus 487 lA~~~~G 493 (541)
T TIGR01315 487 LGAKAAG 493 (541)
T ss_pred HHHHhcC
Confidence 9986553
No 58
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.48 E-value=0.0072 Score=60.71 Aligned_cols=46 Identities=33% Similarity=0.411 Sum_probs=42.5
Q ss_pred ceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHH
Q 043979 154 HDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 154 d~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~ 200 (443)
+.|+|+||.++.+.+.+.+++.+ +.++..+.+|+.+-|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 35999999999999999999999 57888999999999999999884
No 59
>PLN02669 xylulokinase
Probab=96.48 E-value=0.0091 Score=63.61 Aligned_cols=72 Identities=11% Similarity=0.187 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHH
Q 043979 127 LNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASI 201 (443)
Q Consensus 127 l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~ 201 (443)
+++.+++.+.-.++..++..+.. ..++.|+++||.|+.+.+.+.+.+.| +..+...-. .++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~-~ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQR-PDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCC-CCchHHHHHHHHHH
Confidence 45555555555555555544432 35789999999999999999999999 466655444 47889999999975
No 60
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.03 E-value=0.017 Score=60.78 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhC
Q 043979 126 VLNMDLFRKCMEHVEKCLRNSK-IDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 126 ~l~~~~~~~i~~~i~~~l~~a~-~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
.++.-+++.+.-.++..++... .....++.|.++||.+++|...+++.+.| +.++... +..|+.++|||+.|+.-.|
T Consensus 376 ~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 376 HIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhcC
Confidence 3444555555444444333221 11124789999999999999999999999 5666544 4557889999999986654
No 61
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.03 E-value=0.015 Score=61.12 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=43.0
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhC
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
.++.|.++||.++.+...+++.+.| +.++.. .+..++.|+|||+.|+.-.|
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~-~~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVR-PKVTETTALGAAYAAGLAVG 449 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEe-cCCCcchHHHHHHHHHhhcC
Confidence 4789999999999999999999999 577755 44567889999999986654
No 62
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.99 E-value=0.02 Score=59.92 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhC
Q 043979 126 VLNMDLFRKCMEHVEKCLRNSK-IDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 126 ~l~~~~~~~i~~~i~~~l~~a~-~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
.++.-+++.+.-.++..++... .....++.|.++||.++.+.+.+++.+.| +.++... +..++.++|||+.|+.-.|
T Consensus 363 ~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWALG 440 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhcC
Confidence 3444444444444443333221 11124789999999999999999999999 5666544 4667899999999987654
No 63
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.89 E-value=0.12 Score=50.28 Aligned_cols=116 Identities=12% Similarity=0.225 Sum_probs=69.3
Q ss_pred EEEEEEeCCceeEEEEEEEeCCeeeeh-HHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeee
Q 043979 27 NVLIFDLGGGTFDVSLLMIEEGIFEVK-DFDNRLVNNFVAEFKRKHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIE 105 (443)
Q Consensus 27 ~vlV~D~GggT~Dvsv~~~~~~~~~v~-d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~ 105 (443)
+++|+|+|+..+.++++.-..-.|+-- .|- .+.|-+.+.+.|+.+. ..++.+|....-..
T Consensus 194 ~vav~~Igat~s~l~vi~~gk~ly~r~~~~g---~~Qlt~~i~r~~~L~~-----------~~a~~~k~~~~~P~----- 254 (354)
T COG4972 194 KVAVFDIGATSSELLVIQDGKILYTREVPVG---TDQLTQEIQRAYSLTE-----------EKAEEIKRGGTLPT----- 254 (354)
T ss_pred hheeeeecccceEEEEEECCeeeeEeeccCc---HHHHHHHHHHHhCCCh-----------hHhHHHHhCCCCCC-----
Confidence 379999999999999987544433311 110 0112222222333322 24455565543222
Q ss_pred eccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCcCCcceEEEecCCcCcHHHHHHHHhhhC
Q 043979 106 IDSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRN--SKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 106 i~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~--a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~ 177 (443)
+--.+...++++.+.+.|++.|+- +.-...+|+.|+|.||..++-.+.+.+.+.++
T Consensus 255 ----------------~y~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 255 ----------------DYGSEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 111344556666666666666553 12234579999999999999999999999883
No 64
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.87 E-value=0.024 Score=59.79 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHH----cCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHH
Q 043979 127 LNMDLFRKCMEHVEKCLRN----SKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASIL 202 (443)
Q Consensus 127 l~~~~~~~i~~~i~~~l~~----a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l 202 (443)
++.-+++.+.-.++..++. .+. .++.|.++||.++.+...+++.+.| +.++.... ..|+.++|||+.|+.-
T Consensus 380 i~rAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a 454 (504)
T PTZ00294 380 IVRAALEAIALQTNDVIESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLA 454 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC---CcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhh
Confidence 4444555444444444333 243 3789999999999999999999999 56665444 5568899999999866
Q ss_pred hC
Q 043979 203 SG 204 (443)
Q Consensus 203 ~~ 204 (443)
.|
T Consensus 455 ~G 456 (504)
T PTZ00294 455 VG 456 (504)
T ss_pred cC
Confidence 54
No 65
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.86 E-value=0.021 Score=59.59 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHH
Q 043979 125 EVLNMDLFRKCMEHVEK---CLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASI 201 (443)
Q Consensus 125 e~l~~~~~~~i~~~i~~---~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~ 201 (443)
..++.-+++.+.-.++. .+++++. ..++.|.++||.+++|...+++.+.| +.++...-+ .++.++|||+.|+.
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~ 440 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFY 440 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHH
Confidence 33455555554444333 3344321 24788999999999999999999999 577755544 47889999999986
Q ss_pred HhC
Q 043979 202 LSG 204 (443)
Q Consensus 202 l~~ 204 (443)
-.|
T Consensus 441 a~G 443 (465)
T TIGR02628 441 GVG 443 (465)
T ss_pred hcC
Confidence 654
No 66
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.82 E-value=0.025 Score=60.02 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=43.3
Q ss_pred CcceEEEecCC-cCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhC
Q 043979 152 QVHDVVLVSGS-TRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 152 ~id~ViLvGGs-sr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
.++.|.++||. ++.+.+.+++.+.| +.++....+ .|+.|+|||+.|+.-.|
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAG 486 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcC
Confidence 47899999999 99999999999999 577765554 46889999999987664
No 67
>PRK04123 ribulokinase; Provisional
Probab=95.79 E-value=0.024 Score=60.33 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCC-cCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhC
Q 043979 127 LNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGS-TRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 127 l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGs-sr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
++..+++.+.-.++..++...-....++.|.++||. ++.+.+.+++.+.| +.++... .+.|+.++|||+.|+.-.|
T Consensus 413 l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 413 IYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 455555555444333333221111247899999999 99999999999999 5666444 4567889999999986554
No 68
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=95.74 E-value=0.19 Score=52.90 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=53.8
Q ss_pred EEEEecHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCc------------
Q 043979 115 FYATITRARFEVLNMDL---FRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGK------------ 179 (443)
Q Consensus 115 ~~~~itr~efe~l~~~~---~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~------------ 179 (443)
+.+.|.-.++++.+-.- +....+.+-+++.. .+-|.++|+|--||+|.||..++...+-.
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrv 817 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRV 817 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceec
Confidence 33566666666544332 23333333333332 34678999999999999999998865311
Q ss_pred -------cccccCCcchhhhhhhhhHHHHHh
Q 043979 180 -------ELCKSINPDEVVAYGAAVQASILS 203 (443)
Q Consensus 180 -------~i~~~~~pdeaVa~GAa~~a~~l~ 203 (443)
+...--||...+|.||.+++..+.
T Consensus 818 g~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 818 GTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred cceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 122334899999999988876544
No 69
>PRK10331 L-fuculokinase; Provisional
Probab=95.69 E-value=0.027 Score=58.75 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhH
Q 043979 120 TRARFEVLNMDLFRKCMEHVEKCLRNSK-IDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQ 198 (443)
Q Consensus 120 tr~efe~l~~~~~~~i~~~i~~~l~~a~-~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~ 198 (443)
+|.+ +..-+++.+.-.++..++... .....++.|.++||.++.|...+++.+.| +.++.... ..++.++|||+.
T Consensus 359 ~~~~---l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~l 433 (470)
T PRK10331 359 TRGH---FYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAMF 433 (470)
T ss_pred CHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHHH
Confidence 4554 444455544444444333321 11224789999999999999999999999 56665444 457889999999
Q ss_pred HHHHhC
Q 043979 199 ASILSG 204 (443)
Q Consensus 199 a~~l~~ 204 (443)
|+.-.|
T Consensus 434 a~~~~G 439 (470)
T PRK10331 434 GWYGVG 439 (470)
T ss_pred HHHhcC
Confidence 986553
No 70
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=95.63 E-value=0.12 Score=53.36 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhh
Q 043979 120 TRARFEVLNMDLFRKCM---EHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAA 196 (443)
Q Consensus 120 tr~efe~l~~~~~~~i~---~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa 196 (443)
+.+.+-.+..-+++-+. ..|-+++++.+ -.|+.|++.||-.+.|.+.+.+.+.. +..+..+ ..+++++.|+|
T Consensus 399 ~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsA 473 (544)
T COG1069 399 SPESLALLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAA 473 (544)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHH
Confidence 44444455555555553 34445555555 45899999999999999999999999 4555544 77899999999
Q ss_pred hHHHHHhC
Q 043979 197 VQASILSG 204 (443)
Q Consensus 197 ~~a~~l~~ 204 (443)
++|+.-.|
T Consensus 474 m~~avAag 481 (544)
T COG1069 474 MFAAVAAG 481 (544)
T ss_pred HHHHHHhc
Confidence 99986664
No 71
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.52 E-value=0.037 Score=58.36 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHH----HHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHH
Q 043979 126 VLNMDLFRKCMEHV----EKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASI 201 (443)
Q Consensus 126 ~l~~~~~~~i~~~i----~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~ 201 (443)
.++.-+++.+.-.+ ..+.+..+. .++.|.++||.++.+...+++.+.| +.++...-+ .++.++|||+.|+.
T Consensus 374 ~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~-~e~~a~GaA~la~~ 448 (505)
T TIGR01314 374 HMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPES-YESSCLGACILGLK 448 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCC-CCcchHHHHHHHHH
Confidence 34444444444433 333332332 4889999999999999999999999 577755544 46889999999986
Q ss_pred HhC
Q 043979 202 LSG 204 (443)
Q Consensus 202 l~~ 204 (443)
-.|
T Consensus 449 ~~G 451 (505)
T TIGR01314 449 ALG 451 (505)
T ss_pred hcC
Confidence 654
No 72
>PLN02295 glycerol kinase
Probab=95.51 E-value=0.036 Score=58.54 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHc----CC--CcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHH
Q 043979 126 VLNMDLFRKCMEHVEKCLRNS----KI--DKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 126 ~l~~~~~~~i~~~i~~~l~~a----~~--~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a 199 (443)
.++.-+++.+.-.++..++.. +. ....++.|.++||.++.|...+++.+.| +.++... +..|+.|+|||+.|
T Consensus 380 ~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~A 457 (512)
T PLN02295 380 HIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYAA 457 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHHH
Confidence 344455555544444444332 21 1234788999999999999999999999 5776543 45678899999999
Q ss_pred HHHhC
Q 043979 200 SILSG 204 (443)
Q Consensus 200 ~~l~~ 204 (443)
+.-.|
T Consensus 458 ~~~~G 462 (512)
T PLN02295 458 GLAVG 462 (512)
T ss_pred HhhcC
Confidence 86654
No 73
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.50 E-value=0.031 Score=58.04 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=42.2
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhC
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
.++.|.++||.++.++..+.+.+.+ +.++... +.++.|+|||+.|+.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999 5777533 367999999999987654
No 74
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=95.37 E-value=0.072 Score=54.89 Aligned_cols=49 Identities=24% Similarity=0.357 Sum_probs=40.4
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCC-------ccccccCCcchhhhhhhhhHHH
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNG-------KELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~-------~~i~~~~~pdeaVa~GAa~~a~ 200 (443)
-...|+|+||+|.+|.+.++|.+.+.. ..+..+.+|...+=+||+++|.
T Consensus 362 l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 362 LYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred HhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 367899999999999999999887632 2455667888999999999886
No 75
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=95.33 E-value=0.038 Score=53.82 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhh
Q 043979 127 LNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAV 197 (443)
Q Consensus 127 l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~ 197 (443)
+++-..+++.+.|+++....+..+.+. .++.+||.+ |++-..+.+.++-..+..+..|.-+-|.||++
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 344444555566666654556544332 345566665 77778888888545666677788999999985
No 76
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.33 E-value=0.056 Score=55.99 Aligned_cols=79 Identities=23% Similarity=0.308 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCc-CCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHh
Q 043979 125 EVLNMDLFRKCMEHVEKCLRNSKIDK-SQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILS 203 (443)
Q Consensus 125 e~l~~~~~~~i~~~i~~~l~~a~~~~-~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~ 203 (443)
+.+....++.+.--++.+|+....+. ..|+.+.+-||.|+.|.+-+.+.+.+ +.++..+.++|. |+.|||+.|+..+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 34444555555555555555443333 46888999999999999999999999 588888888887 9999999999887
Q ss_pred CC
Q 043979 204 GE 205 (443)
Q Consensus 204 ~~ 205 (443)
+.
T Consensus 464 ~~ 465 (516)
T KOG2517|consen 464 GK 465 (516)
T ss_pred CC
Confidence 53
No 77
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.25 E-value=0.049 Score=57.67 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=42.8
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhC
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
.++.|.++||.++.+...+++.+.| +.++.... ..++.++|||+.|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPV-VKEATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEec-ccCchHHHHHHHHHHHhC
Confidence 4789999999999999999999999 57776554 446889999999986654
No 78
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.05 E-value=0.051 Score=56.74 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=41.8
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhC
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
.++.|.++||.++.+...+++.+.+ +.++... . .++.++|||+.|+.-.|
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~-~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG-P-VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeC-C-hhHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999 5777543 2 37999999999986654
No 79
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.88 E-value=0.088 Score=53.09 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=47.3
Q ss_pred HHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHH
Q 043979 143 LRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASIL 202 (443)
Q Consensus 143 l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l 202 (443)
.+..+......+.|+.|||.||...|-+.|.+.| +..+..- +-.++.+.|+|+.|+.-
T Consensus 433 ~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~ya 490 (545)
T KOG2531|consen 433 AEPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAYA 490 (545)
T ss_pred hccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHHH
Confidence 3445666667899999999999999999999999 4555544 77889999999987643
No 80
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=94.21 E-value=0.78 Score=45.47 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.3
Q ss_pred cceEEEecCCcCcHHHHHHHHhhh
Q 043979 153 VHDVVLVSGSTRIPKVQQLLQDFF 176 (443)
Q Consensus 153 id~ViLvGGssr~p~v~~~l~~~f 176 (443)
...|++.||.|.||.+.++|.+.+
T Consensus 342 ~~nVivtGGtSliqG~s~RL~~EL 365 (426)
T KOG0679|consen 342 LGNVIVTGGTSLIQGFSERLNKEL 365 (426)
T ss_pred hccEEEecCcchhhhHHHHHHHHH
Confidence 578999999999999999987765
No 81
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.02 E-value=0.25 Score=52.05 Aligned_cols=50 Identities=28% Similarity=0.278 Sum_probs=36.2
Q ss_pred CCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHH
Q 043979 151 SQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASIL 202 (443)
Q Consensus 151 ~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l 202 (443)
..++.|.++||++|.++..+++.+.| +.++..+... |+.+.|+|..++.-
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~-e~~a~g~A~~~~~~ 449 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVE-EAGALGGAALAAAA 449 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcc-cchHHHHHHHHHHH
Confidence 34679999999999999999999999 5666654444 45544444444433
No 82
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=93.74 E-value=0.19 Score=42.05 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=19.8
Q ss_pred EEEEEeCCceeEEEEEEE-eCCeeeeh
Q 043979 28 VLIFDLGGGTFDVSLLMI-EEGIFEVK 53 (443)
Q Consensus 28 vlV~D~GggT~Dvsv~~~-~~~~~~v~ 53 (443)
|+++|+|++++.+.+.+. ..+.+.++
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl 27 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVL 27 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEE
Confidence 689999999999999997 34445555
No 83
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=92.51 E-value=0.43 Score=45.85 Aligned_cols=67 Identities=24% Similarity=0.295 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhh----CCccccccCCcchhhhhhhhhHH
Q 043979 130 DLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFF----NGKELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 130 ~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f----~~~~i~~~~~pdeaVa~GAa~~a 199 (443)
...+.+...+..++.+...... .|+|+||..+.+.+++.+.+.+ +..++..+..|....|.|||++|
T Consensus 201 ~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 201 EAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 3334444555555554443221 2999999999987777775544 23344567889999999999986
No 84
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=90.81 E-value=0.63 Score=50.73 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCC---C---CcCHHHHHHHHHHHHHhH--------HHHH----------HHHHccCCCCCC
Q 043979 357 PADKQKIEKAIDEAIEWLDGN---Q---LAEVDELEDKLKELEGLC--------YPII----------VKMYEGSASGDV 412 (443)
Q Consensus 357 ~~e~~~l~~~~~~~~~Wl~~~---~---~a~~~~~~~kl~~L~~~~--------~~i~----------~R~~e~~~~~~~ 412 (443)
.+.++.++..+.+++++|+++ . ..+.+.+.+.++++++.. ..+. ..+..+.- ...
T Consensus 538 ~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~-~~~ 616 (653)
T PTZ00009 538 VEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMY-QAA 616 (653)
T ss_pred HHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH-hhc
Confidence 345667788888888888642 1 124455666666665543 1222 22333322 467
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 043979 413 PMGSSAEMPGGGHGKAETGGAGGG 436 (443)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~ 436 (443)
+||++++||||.|||-.+|+|..|
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~ 640 (653)
T PTZ00009 617 GGGMPGGMPGGMPGGMPGGAGPAG 640 (653)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCC
Confidence 789999999998887766555544
No 85
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=90.18 E-value=6.5 Score=39.54 Aligned_cols=82 Identities=17% Similarity=0.099 Sum_probs=58.3
Q ss_pred EEecHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCcCCcce-EEEecCCcCcHHHHHHHHhhhCCccccccCCc-chhhhh
Q 043979 117 ATITRARFEVLNMDLFRKCM-EHVEKCLRNSKIDKSQVHD-VVLVSGSTRIPKVQQLLQDFFNGKELCKSINP-DEVVAY 193 (443)
Q Consensus 117 ~~itr~efe~l~~~~~~~i~-~~i~~~l~~a~~~~~~id~-ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~p-deaVa~ 193 (443)
..-.+.++-..++..+++++ ..++.++++.+ ++. +.|.||....-..-..|.+..+-..+..++-| |.-+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 45678888888888887764 55667777766 556 99999999999888888887433456555544 789999
Q ss_pred hhhhHHHHHh
Q 043979 194 GAAVQASILS 203 (443)
Q Consensus 194 GAa~~a~~l~ 203 (443)
|||+++....
T Consensus 206 GaA~~~~~~~ 215 (360)
T PF02543_consen 206 GAALYAWHEL 215 (360)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998655
No 86
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=90.02 E-value=2.2 Score=42.90 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccc----cCCcchhhhhhhhhHHH
Q 043979 126 VLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCK----SINPDEVVAYGAAVQAS 200 (443)
Q Consensus 126 ~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~----~~~pdeaVa~GAa~~a~ 200 (443)
+++.-+.+=+...|.+.+.... ...+.|++.||+++.|++.++|++.++ ..+.. ..++|.-=|..-|+.|.
T Consensus 263 D~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~ 337 (365)
T PRK09585 263 DVQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAV 337 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHH
Confidence 3334444444555556554432 225689999999999999999999995 33321 13444333444556664
No 87
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=90.00 E-value=0.86 Score=45.66 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=35.0
Q ss_pred CCCcCCcceEEEecCCcCcHHHHHHHHhhhCC-----c--cccccCCcchhhhhhhhhHHH
Q 043979 147 KIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNG-----K--ELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 147 ~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~-----~--~i~~~~~pdeaVa~GAa~~a~ 200 (443)
.+.+.-...|+|+||+|.+|.+.+++.+.+.. . ++..+.+...+|=.|+++.|.
T Consensus 285 dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 285 DLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred hHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEee
Confidence 33344467899999999999999998876521 1 233333333455667776664
No 88
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=89.07 E-value=1.3 Score=45.38 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=61.0
Q ss_pred EEecHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCcC-CcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhh
Q 043979 117 ATITRAR-FEVLNMDLFRKCMEHVEKCLRNSKIDKS-QVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYG 194 (443)
Q Consensus 117 ~~itr~e-fe~l~~~~~~~i~~~i~~~l~~a~~~~~-~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~G 194 (443)
+-|||.. -+.+++..++.+.-..+++++...-+.. .++.+-+=||.++..++.+...+.+ +.++.++. -.|..|+|
T Consensus 365 ~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~-~~EtTAlG 442 (499)
T COG0554 365 FGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPV-VLETTALG 442 (499)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeeccc-cchhhHHH
Confidence 3444432 2445666666666666666655432222 5888888999999999999999999 56776654 45788999
Q ss_pred hhhHHHHHhC
Q 043979 195 AAVQASILSG 204 (443)
Q Consensus 195 Aa~~a~~l~~ 204 (443)
||+.|..-.|
T Consensus 443 aA~lAGla~G 452 (499)
T COG0554 443 AAYLAGLAVG 452 (499)
T ss_pred HHHHHhhhhC
Confidence 9999987765
No 89
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.79 E-value=2.8 Score=41.62 Aligned_cols=55 Identities=22% Similarity=0.226 Sum_probs=41.3
Q ss_pred CCcCCcceEEEecCCcCcHHHHHHHHhhhCCcccc----ccCCcchhhhhhhhhHHHHH
Q 043979 148 IDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELC----KSINPDEVVAYGAAVQASIL 202 (443)
Q Consensus 148 ~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~----~~~~pdeaVa~GAa~~a~~l 202 (443)
....+.+..++.||..+.|++.+.|...+++..+. ..+++|..=|.+-|+.|...
T Consensus 286 ~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 286 TLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred hccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 33467889999999999999999999999754443 24567766666767766533
No 90
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=88.56 E-value=0.46 Score=48.77 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=26.6
Q ss_pred hHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEEE
Q 043979 7 PAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLMI 45 (443)
Q Consensus 7 p~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~ 45 (443)
|-|++.+... .. ++..++++|+||||+++++++-
T Consensus 132 ~~ASg~avLs-eE----ke~gVa~IDIGgGTT~iaVf~~ 165 (475)
T PRK10719 132 GKGAGAQTLS-EE----RNTRVLNIDIGGGTANYALFDA 165 (475)
T ss_pred HHHhhHHHhh-hh----ccCceEEEEeCCCceEEEEEEC
Confidence 7777776543 22 4778999999999999999873
No 91
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=87.92 E-value=0.6 Score=48.24 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCCcC--CcceEEEecCCcCcHHHHHHHHhhhCC-------ccccccCCcchhhhhhhhhHHHH
Q 043979 136 MEHVEKCLRNSKIDKS--QVHDVVLVSGSTRIPKVQQLLQDFFNG-------KELCKSINPDEVVAYGAAVQASI 201 (443)
Q Consensus 136 ~~~i~~~l~~a~~~~~--~id~ViLvGGssr~p~v~~~l~~~f~~-------~~i~~~~~pdeaVa~GAa~~a~~ 201 (443)
.+.+..+|.....+-. -+..|+|+||.|.+|.+.+.|+..|-. ..+....||-..+=+||+.+|+.
T Consensus 540 ~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 540 AEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 4445555554322222 288999999999999999999986632 24567789999999999998874
No 92
>PLN02666 5-oxoprolinase
Probab=87.11 E-value=7.3 Score=45.56 Aligned_cols=76 Identities=8% Similarity=0.082 Sum_probs=51.0
Q ss_pred ecHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhh
Q 043979 119 ITRARFEVLNMDLF-RKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAV 197 (443)
Q Consensus 119 itr~efe~l~~~~~-~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~ 197 (443)
++-++...-+..+. +...+.|+.+...-++++.+. .++..||+. |...-.|.+.++=+.+..+.+|.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34555544444444 455677777777777766442 334445543 78888899999555688889999999999986
No 93
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=86.58 E-value=4.1 Score=39.51 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=53.2
Q ss_pred EecHHHHHHHHHH------HHHHHHHHHHHHHHHcCCCcCCcceEEEecC--CcCcH-HHHHHHHhhhCCccccccCCcc
Q 043979 118 TITRARFEVLNMD------LFRKCMEHVEKCLRNSKIDKSQVHDVVLVSG--STRIP-KVQQLLQDFFNGKELCKSINPD 188 (443)
Q Consensus 118 ~itr~efe~l~~~------~~~~i~~~i~~~l~~a~~~~~~id~ViLvGG--ssr~p-~v~~~l~~~f~~~~i~~~~~pd 188 (443)
..+++||.+.+.. -++.+...+...+....+.....+.|+|.|- ++|.| .+++.|++.|. .++ ..+..
T Consensus 222 ~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~-~~V-~~L~~- 298 (326)
T TIGR03281 222 ENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVLS-CKV-LVLDS- 298 (326)
T ss_pred cCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHhC-CCe-EEecc-
Confidence 5577887765422 2333333333333322222123348999987 99999 99999999994 332 22333
Q ss_pred hhhhhhhhhHHHHHhC
Q 043979 189 EVVAYGAAVQASILSG 204 (443)
Q Consensus 189 eaVa~GAa~~a~~l~~ 204 (443)
+..|.|+|+.|.-+.+
T Consensus 299 ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 299 ESAAIGLALIAEDIFS 314 (326)
T ss_pred hhhhhhHHHHHHHHhC
Confidence 8899999999987764
No 94
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=86.17 E-value=2.8 Score=42.12 Aligned_cols=74 Identities=23% Similarity=0.226 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccc----cCCcchhhhhhhhhHHH
Q 043979 125 EVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCK----SINPDEVVAYGAAVQAS 200 (443)
Q Consensus 125 e~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~----~~~pdeaVa~GAa~~a~ 200 (443)
+++..-+.+=+...|.+.++... ..++.|++.||+.+.|++.+.|++.+++..+.. .++|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 44444555555555656665543 237899999999999999999999997644422 23344333344455565
Q ss_pred H
Q 043979 201 I 201 (443)
Q Consensus 201 ~ 201 (443)
.
T Consensus 337 ~ 337 (364)
T PF03702_consen 337 R 337 (364)
T ss_dssp H
T ss_pred H
Confidence 3
No 95
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=85.97 E-value=2.1 Score=41.40 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=39.5
Q ss_pred CCcceEEEecC-CcCcHHHHHHHHhhhC--CccccccCCcchhhhhhhhh
Q 043979 151 SQVHDVVLVSG-STRIPKVQQLLQDFFN--GKELCKSINPDEVVAYGAAV 197 (443)
Q Consensus 151 ~~id~ViLvGG-ssr~p~v~~~l~~~f~--~~~i~~~~~pdeaVa~GAa~ 197 (443)
..+..|+++|| .+..|.+++.+...+. +.++..+.|+...+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45889999999 6778999999988652 35778888999999999986
No 96
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=85.57 E-value=0.63 Score=45.11 Aligned_cols=42 Identities=26% Similarity=0.387 Sum_probs=27.0
Q ss_pred cccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEE
Q 043979 2 RIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLM 44 (443)
Q Consensus 2 ~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 44 (443)
++|+..+=|.+.|.--... +......+|+|+|||+|.+++++
T Consensus 89 ~iIsgeeEa~l~~~gv~~~-l~~~~~~lviDIGGGStEl~~~~ 130 (285)
T PF02541_consen 89 EIISGEEEARLSFLGVLSS-LPPDKNGLVIDIGGGSTELILFE 130 (285)
T ss_dssp EEE-HHHHHHHHHHHHHHH-STTTSSEEEEEEESSEEEEEEEE
T ss_pred EEecHHHHHHHHHHHHHhh-ccccCCEEEEEECCCceEEEEEE
Confidence 4566666666655322211 12356799999999999999875
No 97
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=82.51 E-value=14 Score=36.13 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.9
Q ss_pred cceEEEecCCcCcHHHHHHHHhhh
Q 043979 153 VHDVVLVSGSTRIPKVQQLLQDFF 176 (443)
Q Consensus 153 id~ViLvGGssr~p~v~~~l~~~f 176 (443)
+..|+++||++..|..+++|...+
T Consensus 318 ~~NIv~iGGn~~fPgF~~RL~~El 341 (400)
T KOG0680|consen 318 LENIVCIGGNSNFPGFRQRLAREL 341 (400)
T ss_pred HhcEEEecCccCCcchHHHHHHHH
Confidence 678999999999999999998766
No 98
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=81.99 E-value=1.5 Score=41.36 Aligned_cols=88 Identities=24% Similarity=0.313 Sum_probs=55.7
Q ss_pred EEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCcC--CcceEEEecCCcCcHHHHHHHHhhhC---------
Q 043979 117 ATITRARFE---VLNMDLF-----RKCMEHVEKCLRNSKIDKS--QVHDVVLVSGSTRIPKVQQLLQDFFN--------- 177 (443)
Q Consensus 117 ~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~a~~~~~--~id~ViLvGGssr~p~v~~~l~~~f~--------- 177 (443)
+.+--+.|| .+++|-+ ..+.+++-..++.+.++.. --.+|+|.||||.-|.+-..|++.+.
T Consensus 249 IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~ 328 (389)
T KOG0677|consen 249 IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLK 328 (389)
T ss_pred EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHc
Confidence 455556663 5666644 2345555566666554322 24679999999999998888776542
Q ss_pred Cc---------cccccCCcchhhhhhhhhHHHHHhC
Q 043979 178 GK---------ELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 178 ~~---------~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
+. .+..++.-...|-.|.|..|.++..
T Consensus 329 ~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 329 GDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred CChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 11 2333444457888888888887664
No 99
>PRK00976 hypothetical protein; Provisional
Probab=80.57 E-value=6.7 Score=38.64 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=38.9
Q ss_pred CcceEEEecCCcCcH--HHHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHhC
Q 043979 152 QVHDVVLVSGSTRIP--KVQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 152 ~id~ViLvGGssr~p--~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
+++.|+|-||-++++ .+.+.+++.+. .. ...-...+-++|||+.|....+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~-~~--~a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLD-KK--VLVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhc-cc--ccccCCchHHHHHHHHHHHHhC
Confidence 488999999999998 88899988873 22 2333458999999998876653
No 100
>PRK03011 butyrate kinase; Provisional
Probab=80.42 E-value=3.5 Score=41.45 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHcCCCc-CCcceEEEecCCcCcHHHHHHHHhhhC---CccccccCCcchhhhhhhhh
Q 043979 131 LFRKCMEHVEKCLRNSKIDK-SQVHDVVLVSGSTRIPKVQQLLQDFFN---GKELCKSINPDEVVAYGAAV 197 (443)
Q Consensus 131 ~~~~i~~~i~~~l~~a~~~~-~~id~ViLvGGssr~p~v~~~l~~~f~---~~~i~~~~~pdeaVa~GAa~ 197 (443)
.++.....+.+.+...-... .++|.|+|.||.+..+.+++.|++.+. ...+....+-++|.+.||+.
T Consensus 273 ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 273 VYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 44444444444433322122 368999999999999999999988663 23455555667899999874
No 101
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=78.50 E-value=7.2 Score=38.60 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCc-c-ccccCCc----chhhhhhhhhHHHHHh
Q 043979 130 DLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGK-E-LCKSINP----DEVVAYGAAVQASILS 203 (443)
Q Consensus 130 ~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~-~-i~~~~~p----deaVa~GAa~~a~~l~ 203 (443)
.+++.+...|...+. ...+++.|+|.|-.+++|-+.+.+++.|... + ....+.+ -...|.|||+.|.-+.
T Consensus 242 a~~E~i~k~V~~l~~----~~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~gla 317 (343)
T PF07318_consen 242 AMIESIVKAVASLLA----SVPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLA 317 (343)
T ss_pred HHHHHHHHHHHHHhc----ccCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhh
Confidence 344444444443332 2346789999999999999998888887321 1 1112222 2458999999998777
Q ss_pred C
Q 043979 204 G 204 (443)
Q Consensus 204 ~ 204 (443)
|
T Consensus 318 G 318 (343)
T PF07318_consen 318 G 318 (343)
T ss_pred c
Confidence 5
No 102
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=77.96 E-value=6.2 Score=43.41 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=37.7
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCC--ccccccC---CcchhhhhhhhhHHH
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNG--KELCKSI---NPDEVVAYGAAVQAS 200 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~--~~i~~~~---~pdeaVa~GAa~~a~ 200 (443)
.++.|+|.||-.+..++++.+.+.+.. .++..+. --|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999988742 2333332 347899999988774
No 103
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=76.65 E-value=2.8 Score=44.07 Aligned_cols=42 Identities=19% Similarity=0.454 Sum_probs=29.0
Q ss_pred CcccchhHHHHHHhc-cccCcCCCCCcEEEEEEeCCceeEEEEEE
Q 043979 1 MRIINEPAAATIVYG-LDKKASRTGEKNVLIFDLGGGTFDVSLLM 44 (443)
Q Consensus 1 l~li~Ep~AAal~y~-~~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 44 (443)
+++|+-.+=|.+.|. ..... ...+..+|+|+|||++.+++++
T Consensus 108 ievIsG~eEA~l~~~gv~~~l--~~~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 108 VQVISGEEEARLIYQGVAHTT--GGADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred eEEeCHHHHHHHHHHhhhhcc--CCCCCEEEEEecCCeeeEEEec
Confidence 356777777776663 33222 2234689999999999999875
No 104
>PRK10854 exopolyphosphatase; Provisional
Probab=76.47 E-value=3.3 Score=43.82 Aligned_cols=43 Identities=19% Similarity=0.424 Sum_probs=29.5
Q ss_pred CcccchhHHHHHHhc-cccCcCCCCCcEEEEEEeCCceeEEEEEEE
Q 043979 1 MRIINEPAAATIVYG-LDKKASRTGEKNVLIFDLGGGTFDVSLLMI 45 (443)
Q Consensus 1 l~li~Ep~AAal~y~-~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~ 45 (443)
+++|+-.+=|.+.|. ..... ...+..+|+|+|||++.+++++-
T Consensus 113 i~vIsG~EEA~l~~~gv~~~l--~~~~~~lvvDIGGGStEl~~~~~ 156 (513)
T PRK10854 113 IEIISGNEEARLIFMGVEHTQ--PEKGRKLVIDIGGGSTELVIGEN 156 (513)
T ss_pred eEEeCHHHHHHHHHhhhhccc--CCCCCeEEEEeCCCeEEEEEecC
Confidence 356776676776663 33222 12356899999999999999763
No 105
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=76.10 E-value=8.5 Score=35.44 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=23.2
Q ss_pred CCCcEEEEEEeCCceeEEEEEEEeCC
Q 043979 23 TGEKNVLIFDLGGGTFDVSLLMIEEG 48 (443)
Q Consensus 23 ~~~~~vlV~D~GggT~Dvsv~~~~~~ 48 (443)
.+...+|++|+||.++-|+++++.+.
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~g~ 85 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELSGN 85 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEESS
T ss_pred CCCceEEEEeecCcEEEEEEEEEcCC
Confidence 35578999999999999999999876
No 106
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=73.54 E-value=3.4 Score=40.43 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=27.5
Q ss_pred CcccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEE
Q 043979 1 MRIINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLM 44 (443)
Q Consensus 1 l~li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 44 (443)
+++|+..+=|.+.|.--... +. ....+++|+|||++.++++.
T Consensus 102 i~visg~eEa~l~~~gv~~~-~~-~~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 102 IEVISGEEEARLIYLGVAHT-LP-IADGLVVDIGGGSTELILGK 143 (300)
T ss_pred eEEeChHHHHHHHHHHHHhC-CC-CCCcEEEEecCCeEEEEEec
Confidence 35677777777766322211 11 12359999999999999875
No 107
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.49 E-value=3.2 Score=45.14 Aligned_cols=39 Identities=31% Similarity=0.562 Sum_probs=25.6
Q ss_pred ccchhHHHHHHhccccCcCCCCCcEEEEEEeCCceeEEEEEE
Q 043979 3 IINEPAAATIVYGLDKKASRTGEKNVLIFDLGGGTFDVSLLM 44 (443)
Q Consensus 3 li~Ep~AAal~y~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 44 (443)
|.+=|.|-.+....-... ..+ +++++|+||.|||++++.
T Consensus 258 I~SGPAagvvGAa~ltg~--~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 258 ILSGPAAGVVGAAYLTGL--KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred EeeccHHHHHHHHHhccc--ccC-CEEEEEcCCcceeeeeee
Confidence 445566655544333111 113 699999999999999987
No 108
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=73.43 E-value=2.4 Score=41.76 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=17.1
Q ss_pred cEEEEEEeCCceeEEEEEE
Q 043979 26 KNVLIFDLGGGTFDVSLLM 44 (443)
Q Consensus 26 ~~vlV~D~GggT~Dvsv~~ 44 (443)
.+++++|+||.|+|++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 4599999999999999975
No 109
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=68.44 E-value=16 Score=28.80 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=15.8
Q ss_pred HHHHHhHHHHHHHHHccCC
Q 043979 390 KELEGLCYPIIVKMYEGSA 408 (443)
Q Consensus 390 ~~L~~~~~~i~~R~~e~~~ 408 (443)
++|...++.|..|++....
T Consensus 46 ~eL~~~FeeIa~RFrk~~~ 64 (92)
T PF07820_consen 46 AELQAAFEEIAARFRKGKK 64 (92)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 5688889999999988765
No 110
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=68.39 E-value=27 Score=35.63 Aligned_cols=30 Identities=33% Similarity=0.727 Sum_probs=25.1
Q ss_pred CCcEEEEEEeCCceeEEEEEEEe-CCeeeeh
Q 043979 24 GEKNVLIFDLGGGTFDVSLLMIE-EGIFEVK 53 (443)
Q Consensus 24 ~~~~vlV~D~GggT~Dvsv~~~~-~~~~~v~ 53 (443)
+.+.+|++|+||..+-+++|++. ++.+++-
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 56789999999999999999998 4555543
No 111
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=66.38 E-value=6.5 Score=41.21 Aligned_cols=41 Identities=24% Similarity=0.513 Sum_probs=26.4
Q ss_pred cccchhHHHHHHh-ccccCcCCCCCcEEEEEEeCCceeEEEEEE
Q 043979 2 RIINEPAAATIVY-GLDKKASRTGEKNVLIFDLGGGTFDVSLLM 44 (443)
Q Consensus 2 ~li~Ep~AAal~y-~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 44 (443)
++|+..+=|-+.| +.-... ......+|+|+|||+|.+++..
T Consensus 106 evIsGeeEArl~~lGv~~~~--~~~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 106 EVISGEEEARLIYLGVASTL--PRKGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred EEeccHHHHHHHHHHHHhcC--CCCCCEEEEEecCCeEEEEEec
Confidence 3444444444444 332222 2267899999999999999987
No 112
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=64.89 E-value=27 Score=34.63 Aligned_cols=72 Identities=13% Similarity=0.251 Sum_probs=45.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccc-cccCCcchhhhhhh
Q 043979 121 RARFEVLNMD----LFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKEL-CKSINPDEVVAYGA 195 (443)
Q Consensus 121 r~efe~l~~~----~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i-~~~~~pdeaVa~GA 195 (443)
.++.+++|.. .++-+.+..+++|+..+ .+.++++||-+....+|+++++......+ ...+.++.|.--||
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDNaa 305 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDNAA 305 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHhccchHH
Confidence 3444445444 34555666677777665 67899999999999999999987621111 22345555555555
Q ss_pred hh
Q 043979 196 AV 197 (443)
Q Consensus 196 a~ 197 (443)
-+
T Consensus 306 MI 307 (342)
T COG0533 306 MI 307 (342)
T ss_pred HH
Confidence 43
No 113
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=61.77 E-value=81 Score=29.50 Aligned_cols=76 Identities=13% Similarity=0.238 Sum_probs=48.6
Q ss_pred EecHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCc-cccccCCcchhhhhhh
Q 043979 118 TITRARFE-VLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGK-ELCKSINPDEVVAYGA 195 (443)
Q Consensus 118 ~itr~efe-~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~-~i~~~~~pdeaVa~GA 195 (443)
++|.+++- ++-+.+|.-+.+.-++++...+ -+.|++|||-...--+|+++......+ ......|-..|+-.|+
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~ 298 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGV 298 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCch
Confidence 34544442 2333344555566677776655 468999999999999999998876322 1233345667777787
Q ss_pred hhH
Q 043979 196 AVQ 198 (443)
Q Consensus 196 a~~ 198 (443)
.+.
T Consensus 299 MIA 301 (336)
T KOG2708|consen 299 MIA 301 (336)
T ss_pred HHH
Confidence 653
No 114
>PRK09604 UGMP family protein; Validated
Probab=61.63 E-value=21 Score=35.48 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCC--ccccccC---CcchhhhhhhhhHHHHHh
Q 043979 135 CMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNG--KELCKSI---NPDEVVAYGAAVQASILS 203 (443)
Q Consensus 135 i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~--~~i~~~~---~pdeaVa~GAa~~a~~l~ 203 (443)
+.+.++++++.. .++.|+|.||-....++++.|.+.+.. .++..+. --|.++++|+|=+-....
T Consensus 242 l~~~~~~~~~~~-----~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~ 310 (332)
T PRK09604 242 LVIKTKRALKQT-----GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKA 310 (332)
T ss_pred HHHHHHHHHHHh-----CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 334455555443 477899999999999999999998732 2343333 247889999885544444
No 115
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=61.36 E-value=20 Score=35.82 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccc-cccCCcchhhhhhh
Q 043979 133 RKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKEL-CKSINPDEVVAYGA 195 (443)
Q Consensus 133 ~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i-~~~~~pdeaVa~GA 195 (443)
+-+.+.+.++++.. .++.|+++||-+...++|++|++.+....+ ...+.|..|.--||
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~~~ctDNaa 307 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDERYCIDNGA 307 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCChHhhhhhHH
Confidence 44445555555543 367899999999999999999998732221 12234555544444
No 116
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=59.57 E-value=2.4e+02 Score=29.96 Aligned_cols=82 Identities=20% Similarity=0.153 Sum_probs=55.9
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHH-HHHHhhhCCccccccCC-cchhhhhhh
Q 043979 118 TITRARFEVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQ-QLLQDFFNGKELCKSIN-PDEVVAYGA 195 (443)
Q Consensus 118 ~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~-~~l~~~f~~~~i~~~~~-pdeaVa~GA 195 (443)
+..-.++...++..+++++..+-+-+.+... .+.+.+.||-...-... +.+.+.+ ...+...+. -|.-.|.||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHH
Confidence 4445566677777888777666665554321 67899999998876666 5666655 345544443 477899999
Q ss_pred hhHHHHHhC
Q 043979 196 AVQASILSG 204 (443)
Q Consensus 196 a~~a~~l~~ 204 (443)
|+++....+
T Consensus 330 Al~~~~~~~ 338 (555)
T COG2192 330 ALAVKRELG 338 (555)
T ss_pred HHHHHHHhc
Confidence 999876654
No 117
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=58.27 E-value=23 Score=36.27 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=49.4
Q ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHH-hhhCCccccccCCcchhhhh
Q 043979 115 FYATITRARFEVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQ-DFFNGKELCKSINPDEVVAY 193 (443)
Q Consensus 115 ~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~-~~f~~~~i~~~~~pdeaVa~ 193 (443)
-.+.||..++.++- -.--.+..-++-+|++++++.++|+.|+|.||+++.--+.+.+. -.+|.....+..-.-.++-.
T Consensus 291 ~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al~ 369 (412)
T PF14574_consen 291 DDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAALA 369 (412)
T ss_dssp S-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHHH
T ss_pred CCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHHH
Confidence 45789999997752 22234456677788999999999999999999999877777775 23432222222222345666
Q ss_pred hhhhHH
Q 043979 194 GAAVQA 199 (443)
Q Consensus 194 GAa~~a 199 (443)
||.+..
T Consensus 370 GA~~~L 375 (412)
T PF14574_consen 370 GARMAL 375 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
No 118
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=58.14 E-value=28 Score=34.28 Aligned_cols=56 Identities=16% Similarity=0.305 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCC--ccccccC---Ccchhhhhhhh
Q 043979 136 MEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNG--KELCKSI---NPDEVVAYGAA 196 (443)
Q Consensus 136 ~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~--~~i~~~~---~pdeaVa~GAa 196 (443)
.+.++++++.. .++.|+|.||-....++++.|.+.+.. -.+..+. --|.++++|+|
T Consensus 248 ~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 248 VEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 34445555443 367899999999999999999988732 1333332 23778888876
No 119
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=57.39 E-value=44 Score=32.20 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=32.5
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCC------ccccccCCcchhhhhhhhhHHH
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNG------KELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~------~~i~~~~~pdeaVa~GAa~~a~ 200 (443)
+++.|+|-|+.+..+.+.+.+++.+.. .++..+...+.+.+.|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 578889988877766666667666532 1223333456788999998764
No 120
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=57.06 E-value=4.5 Score=41.74 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=40.7
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCC-----cc---------ccccCCcchhhhhhhhhHHHHHh
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNG-----KE---------LCKSINPDEVVAYGAAVQASILS 203 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~-----~~---------i~~~~~pdeaVa~GAa~~a~~l~ 203 (443)
--++|++|||+...|.+.+.|++..-+ .+ .-+..||...+=+|||++|....
T Consensus 526 l~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 526 LFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 357899999999999999999987632 21 12336888999999999997655
No 121
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=55.92 E-value=29 Score=36.84 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhC--CccccccC---CcchhhhhhhhhHHHHHhC
Q 043979 136 MEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFN--GKELCKSI---NPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 136 ~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~--~~~i~~~~---~pdeaVa~GAa~~a~~l~~ 204 (443)
.+.++++++..+ ++.|+|.||-....++++.|.+.+. +-++..+. --|.+++.|+|.+....++
T Consensus 234 ~~~~~~~~~~~g-----~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 234 TEVTERALAHTG-----KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred HHHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 344444444433 6789999999999999999997652 22343333 3478999998876655543
No 122
>PRK09557 fructokinase; Reviewed
Probab=55.62 E-value=23 Score=34.39 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=30.3
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCC--------ccccccCCcchhhhhhhhhHH
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNG--------KELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~--------~~i~~~~~pdeaVa~GAa~~a 199 (443)
+++.|+|-||.++.+.+...+++.+.. .++..+.-.+.+.++|||+..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 578888888887776665556554421 123333345678899998754
No 123
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=53.34 E-value=49 Score=32.08 Aligned_cols=48 Identities=23% Similarity=0.172 Sum_probs=31.2
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCC--------ccccccCCcchhhhhhhhhHH
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNG--------KELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~--------~~i~~~~~pdeaVa~GAa~~a 199 (443)
+++.|+|-||.+..|.+.+.+++.+.. .++..+.-.+.++++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 578888877777666666666665521 123334455678999999765
No 124
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=52.90 E-value=13 Score=38.34 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.3
Q ss_pred CCcEEEEEEeCCceeEEEEEEE
Q 043979 24 GEKNVLIFDLGGGTFDVSLLMI 45 (443)
Q Consensus 24 ~~~~vlV~D~GggT~Dvsv~~~ 45 (443)
....|+=+|+||||+.+++++-
T Consensus 141 ~~~~V~NiDIGGGTtN~avf~~ 162 (473)
T PF06277_consen 141 HHTVVANIDIGGGTTNIAVFDN 162 (473)
T ss_pred hCCeEEEEEeCCCceeEEEEEC
Confidence 3678999999999999999873
No 125
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=52.74 E-value=21 Score=34.80 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCc-HHHHHHHHhhhCC---------ccccccCCcchhhhhhhhhHH
Q 043979 130 DLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRI-PKVQQLLQDFFNG---------KELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 130 ~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~-p~v~~~l~~~f~~---------~~i~~~~~pdeaVa~GAa~~a 199 (443)
.++++....+-.++...-. .-+++.|+|-|+.+.. +++.+.+++.+.. .++..+.-.+.++++|||..+
T Consensus 230 ~i~~~~~~~L~~~i~~~~~-~~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~ 308 (318)
T TIGR00744 230 DSYREVARWAGAGLADLAS-LFNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLA 308 (318)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHH
Confidence 3455555544444433211 1256788888776663 5666666655421 123344445678999999876
Q ss_pred H
Q 043979 200 S 200 (443)
Q Consensus 200 ~ 200 (443)
.
T Consensus 309 ~ 309 (318)
T TIGR00744 309 R 309 (318)
T ss_pred H
Confidence 4
No 126
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=52.49 E-value=21 Score=29.49 Aligned_cols=47 Identities=9% Similarity=0.178 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCCCcCCcceEEEecCCcCc--HHHHHHHHhhhCCc
Q 043979 133 RKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRI--PKVQQLLQDFFNGK 179 (443)
Q Consensus 133 ~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~--p~v~~~l~~~f~~~ 179 (443)
......++++|+++++++++|++|..-|-++.. +.=.+.+++.|+..
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~ 73 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDS 73 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhccc
Confidence 455677999999999999999999998877664 34445678888543
No 127
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=49.07 E-value=48 Score=26.09 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHccCC
Q 043979 390 KELEGLCYPIIVKMYEGSA 408 (443)
Q Consensus 390 ~~L~~~~~~i~~R~~e~~~ 408 (443)
.+|...+..|..|+.+..+
T Consensus 47 ~eL~~aFeeiAaRFR~g~~ 65 (98)
T PRK13848 47 AELQAAFEELAKRFRGGKG 65 (98)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 4588888999999999775
No 128
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=49.05 E-value=51 Score=31.82 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=36.7
Q ss_pred CCcCCcceEEEecCCcCcHHHHHHHHhhhC---CccccccCCcchhhhhhhhh
Q 043979 148 IDKSQVHDVVLVSGSTRIPKVQQLLQDFFN---GKELCKSINPDEVVAYGAAV 197 (443)
Q Consensus 148 ~~~~~id~ViLvGGssr~p~v~~~l~~~f~---~~~i~~~~~pdeaVa~GAa~ 197 (443)
+-+..+|.|+|+||..+...+-++|.+... ...+...-+-.+|-|.||--
T Consensus 292 vL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 292 VLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred hcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 345679999999999999999999988652 12233334556888999863
No 129
>PLN02362 hexokinase
Probab=47.66 E-value=37 Score=35.82 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.8
Q ss_pred CCCcEEEEEEeCCceeEEEEEEEeCC
Q 043979 23 TGEKNVLIFDLGGGTFDVSLLMIEEG 48 (443)
Q Consensus 23 ~~~~~vlV~D~GggT~Dvsv~~~~~~ 48 (443)
.+...+|.+|+||.+|-|..+++.++
T Consensus 92 ~E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 92 SEIGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred CcceeEEEEecCCceEEEEEEEecCC
Confidence 35678999999999999999999874
No 130
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=47.41 E-value=1.9e+02 Score=25.03 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHH--H------hhcccc---hhhhCCCChHHHHHHHHHHHHHHHHhcC--CCCc-----CHHHHHHHHHH
Q 043979 330 GRLSKEEIERMV--M------RNTVRD---EKFAGKLDPADKQKIEKAIDEAIEWLDG--NQLA-----EVDELEDKLKE 391 (443)
Q Consensus 330 ~~ls~eei~~~~--~------r~~l~~---~~~~~~~~~~e~~~l~~~~~~~~~Wl~~--~~~a-----~~~~~~~kl~~ 391 (443)
+.|+.+|.+... + +-..-+ ..-...+|+.++.+++..+.+++=+++. +..+ +.++|.+.++.
T Consensus 38 ~~lgeeEfeef~~lLK~lt~~kLkygD~NGnidye~ls~~eqee~k~~~~eLqPYFdKLN~~~SsK~vlt~~E~d~y~eA 117 (162)
T PF12207_consen 38 GELGEEEFEEFKELLKKLTNAKLKYGDKNGNIDYEKLSKEEQEEYKKLTMELQPYFDKLNGHKSSKEVLTQEEYDQYIEA 117 (162)
T ss_dssp HCS-HHHHHHHHHHHHHHHHHHHHHB-TTS-B-GGGS-HHHHHHHHHHHHHHHHHHHHHTT---HHHHS-HHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHhHHhhcccCCCcCHHhCCHHHHHHHHHHHHhcchHHHHhcCCcchhhhcCHHHHHHHHHH
Confidence 457777777654 1 111111 2234678999999999999999988874 2222 66677776666
Q ss_pred HHH
Q 043979 392 LEG 394 (443)
Q Consensus 392 L~~ 394 (443)
|-.
T Consensus 118 Lm~ 120 (162)
T PF12207_consen 118 LMT 120 (162)
T ss_dssp HHH
T ss_pred Hhh
Confidence 643
No 131
>PLN02377 3-ketoacyl-CoA synthase
Probab=47.01 E-value=57 Score=34.40 Aligned_cols=55 Identities=7% Similarity=0.180 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEE-ecCCcCcHHHHHHHHhhhC
Q 043979 123 RFEVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVL-VSGSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 123 efe~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViL-vGGssr~p~v~~~l~~~f~ 177 (443)
.++...+....-+...++++|+++++++++||.|+. ..+....|.+-.+|.+.+|
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 344555555556677889999999999999999877 4444468999999999995
No 132
>PF13941 MutL: MutL protein
Probab=46.10 E-value=14 Score=38.40 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=21.3
Q ss_pred CcCCcceEEEecCC-cCcHHHHHHHHhhhC
Q 043979 149 DKSQVHDVVLVSGS-TRIPKVQQLLQDFFN 177 (443)
Q Consensus 149 ~~~~id~ViLvGGs-sr~p~v~~~l~~~f~ 177 (443)
+...++.|+-+||. ++.|.-.+.|+..+.
T Consensus 382 DL~~v~~iIgtGGvL~h~~~~~~il~~~~~ 411 (457)
T PF13941_consen 382 DLTRVKYIIGTGGVLTHSPNPEEILKAALD 411 (457)
T ss_pred ccccCCEEEEeCccccCCCCHHHHHHHHhh
Confidence 33468999999985 677777777777663
No 133
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=45.88 E-value=17 Score=36.82 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=19.2
Q ss_pred CcEEEEEEeCCceeEEEEEEEeC
Q 043979 25 EKNVLIFDLGGGTFDVSLLMIEE 47 (443)
Q Consensus 25 ~~~vlV~D~GggT~Dvsv~~~~~ 47 (443)
..++.|+|+|||+|.++..--..
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p~~e 234 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLPTFE 234 (453)
T ss_pred CCceEEEEcCCceEEEEEecCcc
Confidence 56899999999999999876443
No 134
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=45.38 E-value=36 Score=33.29 Aligned_cols=38 Identities=18% Similarity=0.480 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhh
Q 043979 134 KCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFF 176 (443)
Q Consensus 134 ~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f 176 (443)
-+.+.++++++.. .++.|+|.||-....++++.|.+.+
T Consensus 245 ~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 245 HLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3344555555543 3788999999999999999999877
No 135
>PRK14878 UGMP family protein; Provisional
Probab=45.06 E-value=44 Score=33.03 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhh
Q 043979 135 CMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFF 176 (443)
Q Consensus 135 i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f 176 (443)
+.+.++++++..+ +..|+|.||-+...++++.+.+.+
T Consensus 229 l~~~~~~~~~~~g-----~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 229 LVEVTERALAHTG-----KKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred HHHHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHH
Confidence 3344444444433 678999999999999999999876
No 136
>PLN03173 chalcone synthase; Provisional
Probab=44.74 E-value=80 Score=32.14 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCc-CcHHHHHHHHhhhC
Q 043979 129 MDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGST-RIPKVQQLLQDFFN 177 (443)
Q Consensus 129 ~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGss-r~p~v~~~l~~~f~ 177 (443)
+...+-..+.++++|+++++++++||.|+.+.-+. ..|.+--.|.+.+|
T Consensus 100 ~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 34445556778999999999999999998876544 58999999999985
No 137
>PLN03170 chalcone synthase; Provisional
Probab=43.98 E-value=71 Score=32.62 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCc-CcHHHHHHHHhhhC
Q 043979 127 LNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGST-RIPKVQQLLQDFFN 177 (443)
Q Consensus 127 l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGss-r~p~v~~~l~~~f~ 177 (443)
..+...+=.....+++|+++++++++||.|+++-.+. .+|.+--.|.+.+|
T Consensus 102 ~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 102 VVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 3344455567778999999999999999988876544 69999999999995
No 138
>PLN02596 hexokinase-like
Probab=43.32 E-value=48 Score=34.78 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=23.0
Q ss_pred CCCcEEEEEEeCCceeEEEEEEEeCC
Q 043979 23 TGEKNVLIFDLGGGTFDVSLLMIEEG 48 (443)
Q Consensus 23 ~~~~~vlV~D~GggT~Dvsv~~~~~~ 48 (443)
.+...+|.+|+||.+|-|..+++.++
T Consensus 93 ~E~G~yLAlDlGGTNfRV~~V~L~g~ 118 (490)
T PLN02596 93 DEKGLYYGLNLRGSNFLLLRARLGGK 118 (490)
T ss_pred CcceEEEEEeeCCceEEEEEEEEcCC
Confidence 35678999999999999999999875
No 139
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=42.40 E-value=67 Score=31.19 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCcCCcceEEE-ecCCcCcHHHHHHHHhhhC
Q 043979 134 KCMEHVEKCLRNSKIDKSQVHDVVL-VSGSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 134 ~i~~~i~~~l~~a~~~~~~id~ViL-vGGssr~p~v~~~l~~~f~ 177 (443)
-+...|+++|+++++++.+||.++. +..+.-.|.+-.+|.+.|+
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 4467788999999999999998654 6678889999999999995
No 140
>PRK09698 D-allose kinase; Provisional
Probab=42.36 E-value=88 Score=30.19 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=31.7
Q ss_pred CCcceEEEecCCcCc-----HHHHHHHHhhhC----C--ccccccCCcchhhhhhhhhHHH
Q 043979 151 SQVHDVVLVSGSTRI-----PKVQQLLQDFFN----G--KELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 151 ~~id~ViLvGGssr~-----p~v~~~l~~~f~----~--~~i~~~~~pdeaVa~GAa~~a~ 200 (443)
-+++.|+|-||.+.. +.+++.+++..- . .++..+...+.+.++|||+.+.
T Consensus 235 ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 235 FDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred hCCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 357888888877664 345566655431 1 1234455567889999998764
No 141
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=41.89 E-value=96 Score=31.07 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=32.5
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCCc-cc--cccCCcchhhhhhhh
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNGK-EL--CKSINPDEVVAYGAA 196 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~~-~i--~~~~~pdeaVa~GAa 196 (443)
++|.|++.||-+..+.+++.|.+.+.-. ++ ....+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 5899999999999999999998877321 22 222344577788875
No 142
>PLN03172 chalcone synthase family protein; Provisional
Probab=40.68 E-value=78 Score=32.26 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCc-CcHHHHHHHHhhhC
Q 043979 125 EVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGST-RIPKVQQLLQDFFN 177 (443)
Q Consensus 125 e~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGss-r~p~v~~~l~~~f~ 177 (443)
+...+...+-..+.++++|+++++++++||.|+++-.+. .+|.+--.|.+.+|
T Consensus 96 ~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 96 DMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 333444555566778999999999999999998776555 69999999999995
No 143
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=39.72 E-value=30 Score=34.76 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCc
Q 043979 128 NMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRI 165 (443)
Q Consensus 128 ~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~ 165 (443)
++.....+...++++|+++++++++||.+++-+++.++
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~ 303 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINM 303 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH
Confidence 44556677889999999999999999999999999774
No 144
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=38.97 E-value=1.4e+02 Score=31.11 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=24.0
Q ss_pred CCCcEEEEEEeCCceeEEEEEEEeCCe
Q 043979 23 TGEKNVLIFDLGGGTFDVSLLMIEEGI 49 (443)
Q Consensus 23 ~~~~~vlV~D~GggT~Dvsv~~~~~~~ 49 (443)
++...++.+|+||..|-|..+.+.++.
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 83 TEKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred CcCCCEEEEecCCCceEEEEEEecCCc
Confidence 456789999999999999999998874
No 145
>PLN03168 chalcone synthase; Provisional
Probab=38.85 E-value=1e+02 Score=31.37 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCC-cCcHHHHHHHHhhhC
Q 043979 125 EVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGS-TRIPKVQQLLQDFFN 177 (443)
Q Consensus 125 e~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGs-sr~p~v~~~l~~~f~ 177 (443)
+...+...+-..+..+++|+++++++++||.|+++-.+ -.+|.+--.|.+.+|
T Consensus 95 ~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 95 DIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 33444555556778899999999999999999876432 357999999999985
No 146
>COG4907 Predicted membrane protein [Function unknown]
Probab=38.69 E-value=26 Score=35.87 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=9.7
Q ss_pred CCccccceEEEEecccccce
Q 043979 206 GNEKVQDLLLLDVTPLSLGI 225 (443)
Q Consensus 206 ~~~~~~~~~~~d~~~~sigi 225 (443)
|..+.+++.+..+.|-..|.
T Consensus 293 p~~~~kp~~vn~i~~gd~G~ 312 (595)
T COG4907 293 PKSKNKPIKVNRILPGDSGS 312 (595)
T ss_pred CCcCCCCcEEEEecCCCCCC
Confidence 33344555555555554443
No 147
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=37.32 E-value=2.2e+02 Score=22.97 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=37.8
Q ss_pred eEEEeeecCCCCccEEEEEeeccccccccCceeeEEEEeCCCCCCCCCCeEEEEEEecC--CceEEEEE
Q 043979 246 KEEIFSTYSDNQPGVLIQVYEGERARAKYNNLLGKFELMGIPPAPKGVPQINVCFDIDA--NGILHVSA 312 (443)
Q Consensus 246 ~~~~f~~~~d~q~~i~i~iy~ge~~~~~~n~~ig~~~l~~i~~~~~g~~~i~v~f~~d~--~g~l~v~~ 312 (443)
.+..|....+....+.|.+|.-+.. .+..||++.+. +.....|.. +...|.+.. .|.|.++.
T Consensus 52 e~f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~-l~~l~~g~~-~~~~~~L~~~~~g~l~~~~ 115 (119)
T cd04036 52 ETFEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFD-VSKLKLGEK-VRVTFSLNPQGKEELEVEF 115 (119)
T ss_pred eEEEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEE-HHHCCCCCc-EEEEEECCCCCCceEEEEE
Confidence 3444544333344588889975432 56789999987 444334433 677777665 37776654
No 148
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=37.08 E-value=78 Score=31.42 Aligned_cols=48 Identities=8% Similarity=0.087 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHH
Q 043979 125 EVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLL 172 (443)
Q Consensus 125 e~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l 172 (443)
|...+...+.+..+|+++|++++++..|||.|-.+=|-..++.++--+
T Consensus 44 e~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~ 91 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGA 91 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHH
Confidence 345678889999999999999999999999999999999988876443
No 149
>PLN02854 3-ketoacyl-CoA synthase
Probab=36.53 E-value=66 Score=34.05 Aligned_cols=45 Identities=4% Similarity=0.200 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCCcCCcceEEE-ecCCcCcHHHHHHHHhhhC
Q 043979 133 RKCMEHVEKCLRNSKIDKSQVHDVVL-VSGSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 133 ~~i~~~i~~~l~~a~~~~~~id~ViL-vGGssr~p~v~~~l~~~f~ 177 (443)
.-+...++++|+++++++++||.|++ ..+....|.+-.+|.+.+|
T Consensus 190 ~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 190 AVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 34456778889999999999999886 3344457999999999995
No 150
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=35.62 E-value=1.3e+02 Score=27.94 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCCcCCcceEEEecCCcC--cHHHHHHHHhhhCC
Q 043979 135 CMEHVEKCLRNSKIDKSQVHDVVLVSGSTR--IPKVQQLLQDFFNG 178 (443)
Q Consensus 135 i~~~i~~~l~~a~~~~~~id~ViLvGGssr--~p~v~~~l~~~f~~ 178 (443)
....++++|+++++++++|+.|++.....- .|.+...|...++-
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 456778899999999999999887654333 57888888888854
No 151
>PLN02914 hexokinase
Probab=34.46 E-value=96 Score=32.58 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.3
Q ss_pred CCcEEEEEEeCCceeEEEEEEEeCC
Q 043979 24 GEKNVLIFDLGGGTFDVSLLMIEEG 48 (443)
Q Consensus 24 ~~~~vlV~D~GggT~Dvsv~~~~~~ 48 (443)
+...+|.+|+||.+|-|..+++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGGK 117 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecCC
Confidence 4567999999999999999999873
No 152
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.39 E-value=1.1e+02 Score=31.54 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=18.7
Q ss_pred CcCHHHHHHHHHHHHHhHHHHHHH
Q 043979 379 LAEVDELEDKLKELEGLCYPIIVK 402 (443)
Q Consensus 379 ~a~~~~~~~kl~~L~~~~~~i~~R 402 (443)
..+.++|..||+.++++-.--..|
T Consensus 709 l~d~key~~klek~eki~eir~qr 732 (840)
T KOG2003|consen 709 LKDAKEYADKLEKAEKIKEIREQR 732 (840)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999988877666666
No 153
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=34.16 E-value=1.1e+02 Score=31.20 Aligned_cols=46 Identities=7% Similarity=0.056 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCc-CcHHHHHHHHhhh
Q 043979 128 NMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGST-RIPKVQQLLQDFF 176 (443)
Q Consensus 128 ~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGss-r~p~v~~~l~~~f 176 (443)
++-++.++.+.|-....... ..+|.|+++||-+ ..+.|++.|.+.+
T Consensus 302 ~d~f~yri~k~Iga~~a~L~---g~vDaiVfTGGIgE~s~~lr~~I~~~l 348 (402)
T PRK00180 302 LDVFVYRLAKYIGSYAAALN---GRLDAIVFTAGIGENSALVREKVLEGL 348 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 34444555555555544331 3599999999999 9999999999876
No 154
>PTZ00107 hexokinase; Provisional
Probab=34.14 E-value=46 Score=34.68 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCcEEEEEEeCCceeEEEEEEEeCC
Q 043979 24 GEKNVLIFDLGGGTFDVSLLMIEEG 48 (443)
Q Consensus 24 ~~~~vlV~D~GggT~Dvsv~~~~~~ 48 (443)
+...+|.+|+||.+|-|.+|++.++
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 5677999999999999999999864
No 155
>PRK14878 UGMP family protein; Provisional
Probab=34.02 E-value=58 Score=32.19 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHH
Q 043979 126 VLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQ 170 (443)
Q Consensus 126 ~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~ 170 (443)
.......+.+...++++|+++++++.+||.|.+.-|-..++.++-
T Consensus 39 ~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrv 83 (323)
T PRK14878 39 EAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRV 83 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHH
Confidence 344556678889999999999999999999999988777777763
No 156
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=33.76 E-value=85 Score=25.43 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcce--EEEecCCcCcHHHHHHHHhhhC
Q 043979 129 MDLFRKCMEHVEKCLRNSKIDKSQVHD--VVLVSGSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 129 ~~~~~~i~~~i~~~l~~a~~~~~~id~--ViLvGGssr~p~v~~~l~~~f~ 177 (443)
..-...+.+-|+.+|+.++.+.++|-. |+|+.-....+.+.+...++|+
T Consensus 32 ~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~ 82 (111)
T cd02198 32 EAQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFK 82 (111)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcC
Confidence 344556667778888889988887655 5667655788889888899996
No 157
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=33.48 E-value=40 Score=29.62 Aligned_cols=60 Identities=22% Similarity=0.165 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHH
Q 043979 131 LFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 131 ~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~ 200 (443)
+.+++.+-..+.|...+...+++ .|+-|=|+-.+|++-+.+.+. -+.|-.|+.||.+.+.
T Consensus 24 It~~Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~---------~~yDaiIaLG~VIrGe 83 (158)
T PRK12419 24 IVDQARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKT---------GRYAAIVAAALVVDGG 83 (158)
T ss_pred HHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhc---------CCCCEEEEEEEEEcCC
Confidence 33444444455566778766667 677899999999998777432 2456777788877664
No 158
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=32.76 E-value=70 Score=31.55 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHH
Q 043979 127 LNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQ 169 (443)
Q Consensus 127 l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~ 169 (443)
......+.+...|+++|+++++++.+||.|.+.-|-...+.++
T Consensus 41 ~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 41 AAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 4455667788889999999999999999999999887777766
No 159
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=32.57 E-value=1.3e+02 Score=29.93 Aligned_cols=64 Identities=13% Similarity=0.234 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccc-cccCCcchhhhhhh
Q 043979 132 FRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKEL-CKSINPDEVVAYGA 195 (443)
Q Consensus 132 ~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i-~~~~~pdeaVa~GA 195 (443)
+..+.+...++++.+.+.++.+...++.||-++..||+.+|+........ ..-+-|+.|.--|.
T Consensus 285 ~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNgi 349 (405)
T KOG2707|consen 285 FRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNGI 349 (405)
T ss_pred HHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcCCcch
Confidence 34445555666666667777888999999999999999999987632211 11144555555554
No 160
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=32.23 E-value=1e+02 Score=30.04 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhC
Q 043979 127 LNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 127 l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~ 177 (443)
++...+..+...++++|+++++++++|+.+++-.++ +.+.+.+.+.++
T Consensus 219 ~~~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg 266 (325)
T PRK12879 219 VFKWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLG 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcC
Confidence 344445667788999999999999999999998876 444567777763
No 161
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=32.19 E-value=89 Score=30.79 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhC--CccccccC---Ccchhhhhh
Q 043979 137 EHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFN--GKELCKSI---NPDEVVAYG 194 (443)
Q Consensus 137 ~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~--~~~i~~~~---~pdeaVa~G 194 (443)
..++++++..+ ++.|+|.||-....++++.|.+.+. +-++..+. --|.+++.|
T Consensus 232 ~~a~~~~~~~g-----~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 232 EVTERALAHTG-----KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred HHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 34444444433 6789999999999999999999652 22333222 236677777
No 162
>PLN02192 3-ketoacyl-CoA synthase
Probab=31.98 E-value=1.1e+02 Score=32.48 Aligned_cols=54 Identities=4% Similarity=0.140 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEec-CCcCcHHHHHHHHhhhC
Q 043979 124 FEVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVS-GSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 124 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvG-Gssr~p~v~~~l~~~f~ 177 (443)
+++..++...-+...++++|+++++++++||.|+... +..-.|.+-.+|.+.++
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhC
Confidence 4444444445566778899999999999999887652 22357999999999995
No 163
>PRK00865 glutamate racemase; Provisional
Probab=31.90 E-value=93 Score=29.64 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=44.8
Q ss_pred ecHHHHHHHHHHHH---HHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhh
Q 043979 119 ITRARFEVLNMDLF---RKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGA 195 (443)
Q Consensus 119 itr~efe~l~~~~~---~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GA 195 (443)
+.-.++..+++.-. +.....+++.++... ...+|.|+| |+|-+|++.+.+++.++. . ..-+||.+++|+=+
T Consensus 143 ~~~~~lv~~ie~g~~~~~~~~~~l~~~l~~l~--~~g~d~iIL--GCTh~p~l~~~i~~~~~~-~-v~vIDp~~~~a~~~ 216 (261)
T PRK00865 143 LACPELVPLVEAGILGGPVTLEVLREYLAPLL--AAGIDTLVL--GCTHYPLLKPEIQQVLGE-G-VTLIDSGEAIARRV 216 (261)
T ss_pred ecCHHHHHHHhCCCcCCHHHHHHHHHHHHHHh--cCCCCEEEE--CCcCHHHHHHHHHHHcCC-C-CEEECCHHHHHHHH
Confidence 44444544443211 233444555555432 235777665 899999999999999842 2 24478888887766
Q ss_pred hhH
Q 043979 196 AVQ 198 (443)
Q Consensus 196 a~~ 198 (443)
.-+
T Consensus 217 ~~~ 219 (261)
T PRK00865 217 ARL 219 (261)
T ss_pred HHH
Confidence 543
No 164
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=31.24 E-value=59 Score=33.45 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=15.4
Q ss_pred CcEEEEEEeCCceeEEEEEE
Q 043979 25 EKNVLIFDLGGGTFDVSLLM 44 (443)
Q Consensus 25 ~~~vlV~D~GggT~Dvsv~~ 44 (443)
..++-++||||+++.|+..-
T Consensus 163 ~~t~g~lDlGGaStQIaf~~ 182 (434)
T PF01150_consen 163 SNTVGALDLGGASTQIAFEP 182 (434)
T ss_dssp SS-EEEEEE-SSEEEEEEEE
T ss_pred CceEEEEecCCcceeeeecc
Confidence 47899999999999999544
No 165
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=30.94 E-value=75 Score=31.08 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHH
Q 043979 125 EVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLL 172 (443)
Q Consensus 125 e~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l 172 (443)
+.......+.+...|+++|+++++++.+||.|.+.-|-...+.+|--+
T Consensus 42 ~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~ 89 (305)
T TIGR00329 42 EEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGA 89 (305)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHH
Confidence 344566778889999999999999999999999999999999888544
No 166
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=30.61 E-value=75 Score=30.43 Aligned_cols=66 Identities=11% Similarity=0.320 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHhhcccc--hhhhCCCChHHHHHHHHHHHHH-HHHhcCC---CCc--CHHHHHHHHHHHHHhHH
Q 043979 330 GRLSKEEIERMVMRNTVRD--EKFAGKLDPADKQKIEKAIDEA-IEWLDGN---QLA--EVDELEDKLKELEGLCY 397 (443)
Q Consensus 330 ~~ls~eei~~~~~r~~l~~--~~~~~~~~~~e~~~l~~~~~~~-~~Wl~~~---~~a--~~~~~~~kl~~L~~~~~ 397 (443)
.+|-+.|+--.-+|.+|++ .++.. .+.|...|+..|..+ ++|+++. -.| ..++-+..++.|++.++
T Consensus 61 TPLQQKEV~iRHLkakLkes~~~l~d--RetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvie 134 (305)
T PF15290_consen 61 TPLQQKEVCIRHLKAKLKESENRLHD--RETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIE 134 (305)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544446666654 22222 455666777777766 5799874 222 44444555555555443
No 167
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=29.82 E-value=1.2e+02 Score=29.44 Aligned_cols=47 Identities=6% Similarity=0.031 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhh
Q 043979 127 LNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFF 176 (443)
Q Consensus 127 l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f 176 (443)
+.......+.+.++++|+++++++++|+++++-.++ +.+.+.+.+.+
T Consensus 213 ~~~~~~~~~~~~i~~~l~~~g~~~~di~~~~~h~~~---~~~~~~~~~~l 259 (319)
T PRK09352 213 VFKFAVRELAKVAREALEAAGLTPEDIDWLVPHQAN---LRIIDATAKKL 259 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHh
Confidence 344455667889999999999999999999998765 34556666666
No 168
>COG5418 Predicted secreted protein [Function unknown]
Probab=29.55 E-value=1e+02 Score=26.55 Aligned_cols=69 Identities=16% Similarity=0.328 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCCCc-e-eeeeccc---cCCceEEEEecHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEec
Q 043979 88 AYERAKRTLSSTKQ-T-TIEIDSL---YEGIDFYATITRARFEVL-NMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVS 160 (443)
Q Consensus 88 ~~E~~K~~LS~~~~-~-~i~i~~~---~~~~~~~~~itr~efe~l-~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvG 160 (443)
.+..++..|+++.. + -+.+++- +-+.+ +-.+||++|+.. ...+.+++.++|-++|.+-. ++.+ .+++||
T Consensus 30 ~~~ev~~~l~~npk~~~IiqlPCPE~~yLg~~-R~~~tke~~d~~~yRr~c~ki~~pi~~~l~e~k--~d~~-kii~IG 104 (164)
T COG5418 30 TAKEVRKALPSNPKDWNIIQLPCPEFEYLGWP-RPPMTKEVFDHPGYRRVCRKIADPIGRVLEEEK--PDGI-KIIFIG 104 (164)
T ss_pred HHHHHHHhhccCCCCCceEeccCchHHhhCCC-CCCcCHHHhcchhHHHHHHHHHHHHHHHHHHhC--cCCc-eEEEEe
Confidence 55667777777733 2 3455431 11222 247899999875 67778888888888888754 2222 456666
No 169
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=29.21 E-value=1.2e+02 Score=29.36 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhC
Q 043979 127 LNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 127 l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~ 177 (443)
++...+..+...++++|+++++++++|+.+++-.++ +.+.+.+.+.++
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~g~~~~di~~~~~h~~~---~~~~~~~~~~lg 260 (318)
T TIGR00747 213 VFKHAVRKMGDVVEETLEANGLDPEDIDWFVPHQAN---LRIIEALAKRLE 260 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcC
Confidence 344555667788999999999999999999987775 445666777773
No 170
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=29.04 E-value=94 Score=31.08 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHH
Q 043979 126 VLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLL 172 (443)
Q Consensus 126 ~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l 172 (443)
.......+.+...|+++|++++++..+||.|-..-|-...+.++=-+
T Consensus 44 ~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~ 90 (345)
T PTZ00340 44 ETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGA 90 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHH
Confidence 45567788999999999999999999999999999998878776544
No 171
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=28.72 E-value=1.8e+02 Score=28.99 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=35.1
Q ss_pred CCcceEEEecCCcCc-HHHHHHHH---hhh--CCccccccCCcchhhhhhhhhH
Q 043979 151 SQVHDVVLVSGSTRI-PKVQQLLQ---DFF--NGKELCKSINPDEVVAYGAAVQ 198 (443)
Q Consensus 151 ~~id~ViLvGGssr~-p~v~~~l~---~~f--~~~~i~~~~~pdeaVa~GAa~~ 198 (443)
..++.|+++|.+.|. |...+.|. +++ +..++....|...+-|.||.+.
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 358899999999975 77788887 455 2345667778999999999874
No 172
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=28.70 E-value=41 Score=34.83 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=20.9
Q ss_pred HHHcCCCcCCcceEEEecCC-cCcH--HHHHHHHh
Q 043979 143 LRNSKIDKSQVHDVVLVSGS-TRIP--KVQQLLQD 174 (443)
Q Consensus 143 l~~a~~~~~~id~ViLvGGs-sr~p--~v~~~l~~ 174 (443)
..+.|.+...++.|+-+||. ++.| ....+++.
T Consensus 380 ~~q~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~ 414 (463)
T TIGR01319 380 DLQIGKDLLNVKCVIGSGGVLSHASQFDMGEILKA 414 (463)
T ss_pred ecccCCCchhCcEEEEeCcceeCCCCcCHHHHHhh
Confidence 33445556678899999985 5555 56666643
No 173
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=28.46 E-value=1.3e+02 Score=29.49 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhC
Q 043979 129 MDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 129 ~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~ 177 (443)
+-..+.+...++++|+++++++++|+.+++-.++.+ +.+.+.+.|+
T Consensus 226 ~~~~~~~~~~i~~~L~~~gl~~~did~~~~H~~~~~---~~~~i~~~l~ 271 (329)
T PRK07204 226 KLSSKYLMKFIDKLLMDAGYTLADIDLIVPHQASGP---AMRLIRKKLG 271 (329)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEeCCCCHH---HHHHHHHHcC
Confidence 334456778899999999999999999999888754 3457777773
No 174
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=28.44 E-value=1.2e+02 Score=29.33 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhC
Q 043979 128 NMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 128 ~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~ 177 (443)
.+...+.+...++++|+++++++++|+.+++-.++ +.+.+.+.+.++
T Consensus 218 ~~~~~~~~~~~i~~~l~~~g~~~~di~~~~~h~~~---~~~~~~~~~~lg 264 (320)
T cd00830 218 FKFAVRLMPESIEEALEKAGLTPDDIDWFVPHQAN---LRIIEAVAKRLG 264 (320)
T ss_pred HHHHHHhhHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHhC
Confidence 34445667788999999999999999999998886 444566777773
No 175
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.39 E-value=75 Score=31.71 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHHHHHHHHHccC
Q 043979 386 EDKLKELEGLCYPIIVKMYEGS 407 (443)
Q Consensus 386 ~~kl~~L~~~~~~i~~R~~e~~ 407 (443)
++|+-.+++++-.+..|+++-+
T Consensus 64 qeKFl~IR~KlleL~~~lQ~lS 85 (379)
T PF11593_consen 64 QEKFLLIRSKLLELYNKLQELS 85 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555543
No 176
>PLN02920 pantothenate kinase 1
Probab=28.28 E-value=1.7e+02 Score=29.72 Aligned_cols=49 Identities=8% Similarity=-0.132 Sum_probs=37.2
Q ss_pred CCcceEEEecCCcCcH-HHHHHHHhhh-----CCccccccCCcchhhhhhhhhHH
Q 043979 151 SQVHDVVLVSGSTRIP-KVQQLLQDFF-----NGKELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 151 ~~id~ViLvGGssr~p-~v~~~l~~~f-----~~~~i~~~~~pdeaVa~GAa~~a 199 (443)
.+++.|+++|.+.|.+ ..++.|.-.+ ++.+.....+....-|.||++..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4689999999999998 6666454322 34566777788899999998754
No 177
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=28.21 E-value=1.2e+02 Score=28.69 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=31.5
Q ss_pred CcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhh
Q 043979 152 QVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAA 196 (443)
Q Consensus 152 ~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa 196 (443)
.+|.|+| |.|..|++.+.+++.|+ .. ..-+||.+++|+=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~-~~-v~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLP-EH-VRLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcC-CC-cEEECCHHHHHHHHH
Confidence 5777655 99999999999999995 22 245789888877554
No 178
>PRK06840 hypothetical protein; Validated
Probab=28.12 E-value=1.1e+02 Score=29.99 Aligned_cols=46 Identities=9% Similarity=0.165 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcceEEEecCCc---CcHHHHHHHHhhhC
Q 043979 132 FRKCMEHVEKCLRNSKIDKSQVHDVVLVSGST---RIPKVQQLLQDFFN 177 (443)
Q Consensus 132 ~~~i~~~i~~~l~~a~~~~~~id~ViLvGGss---r~p~v~~~l~~~f~ 177 (443)
.+=....++++|+++++++++||.++.++-.+ ..|..-..|...++
T Consensus 54 ~~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lG 102 (339)
T PRK06840 54 SDMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIG 102 (339)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhC
Confidence 34455788899999999999999998765322 36666667777774
No 179
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=28.02 E-value=26 Score=33.25 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=17.5
Q ss_pred CCcEEEEEEeCCceeEEEEEE
Q 043979 24 GEKNVLIFDLGGGTFDVSLLM 44 (443)
Q Consensus 24 ~~~~vlV~D~GggT~Dvsv~~ 44 (443)
.++.+++||+|..|+|+--+.
T Consensus 128 ~~dsci~VD~GSTTtDIIPi~ 148 (330)
T COG1548 128 IKDSCILVDMGSTTTDIIPIK 148 (330)
T ss_pred cCCceEEEecCCcccceEeec
Confidence 367799999999999987655
No 180
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=27.91 E-value=33 Score=25.82 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=16.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhc
Q 043979 354 KLDPADKQKIEKAIDEAIEWLD 375 (443)
Q Consensus 354 ~~~~~e~~~l~~~~~~~~~Wl~ 375 (443)
+++.+||+.+..+++.+.+=|+
T Consensus 2 KVt~~EkeQLS~AID~mnEGLD 23 (84)
T PF11458_consen 2 KVTDQEKEQLSTAIDRMNEGLD 23 (84)
T ss_pred CCchHHHHHHHHHHHHHHhhHH
Confidence 4577888888888888877664
No 181
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=27.84 E-value=88 Score=30.74 Aligned_cols=68 Identities=10% Similarity=0.039 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHh--hh--CCccccccCCcchhhhh
Q 043979 126 VLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQD--FF--NGKELCKSINPDEVVAY 193 (443)
Q Consensus 126 ~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~--~f--~~~~i~~~~~pdeaVa~ 193 (443)
.......+.+...|+++|++++++..+||.|.+.-|-...+.+|--+.- -+ .-..+...++-.++.|.
T Consensus 44 ~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~~~p~~~v~h~~aha~ 115 (314)
T TIGR03723 44 LASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALALNKPLIGVNHLEGHLL 115 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHhCCCEEecccHHHHHH
Confidence 3456677888999999999999999999999999999999988765532 11 01133445555555554
No 182
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=27.06 E-value=55 Score=28.07 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHH
Q 043979 129 MDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 129 ~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a 199 (443)
+.+.+++.+-..+.|++.++..++|+ ++-|=|+-.+|++-+.+.+. -+.|-.|+.||.+.+
T Consensus 12 ~~i~~~L~~ga~~~l~~~g~~~~~i~-v~~VPGa~EiP~a~~~l~~~---------~~~DavI~LG~VIrG 72 (138)
T TIGR00114 12 RDITDMLLKGAIDALKRLGAEVDNID-VIWVPGAFELPLAVKKLAET---------GKYDAVIALGCVIRG 72 (138)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceE-EEECCcHHHHHHHHHHHHhc---------CCCCEEEEEeeEEeC
Confidence 35556666666777778887665554 55799999999998777532 235666777776654
No 183
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=27.03 E-value=62 Score=31.03 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhh--h--CCccccccCCcchhhhhhh
Q 043979 128 NMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDF--F--NGKELCKSINPDEVVAYGA 195 (443)
Q Consensus 128 ~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~--f--~~~~i~~~~~pdeaVa~GA 195 (443)
.+...+.+...|+++|++++++..+||.|.+.-|-+....||--+.-. + .-..+...++-.++-+..+
T Consensus 26 ~r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~~~Pli~v~~l~a~a~~~ 97 (268)
T PF00814_consen 26 SRQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALALNIPLIGVSHLEAHALSA 97 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHhCCCeEeeccHHHHHHhH
Confidence 455677888999999999999999999999998888888886554321 1 0123344455555554443
No 184
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=26.97 E-value=3e+02 Score=22.65 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCceeeeeccccCCceEEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcCC
Q 043979 79 ARALRRLRTAYERAKRTLSSTKQTTIEIDSLYEGIDFYATITRARFEVLNM---DLFRKCMEHVEKCLRNSKIDKSQ 152 (443)
Q Consensus 79 ~~~~~~L~~~~E~~K~~LS~~~~~~i~i~~~~~~~~~~~~itr~efe~l~~---~~~~~i~~~i~~~l~~a~~~~~~ 152 (443)
.....+|.++++.-...++.... .+| ..|.+.++.++++.+.. .+.+.+.+.+.+-..+.++....
T Consensus 27 vEIa~~L~remd~~a~~~~~~r~---~aP-----N~y~V~Ls~~D~~~l~~~~~~l~~el~~~l~~~a~~qgy~~~G 95 (116)
T PF12401_consen 27 VEIAKALRREMDDQARVVSRGRT---LAP-----NVYTVELSPEDYERLSPWGDRLARELADYLAEHAREQGYTFVG 95 (116)
T ss_dssp HHHHHHHHHHHHHT-B---TT-----B--------EEEEEEEHHHHHHH-S-SHHHHHHHHHHHHHHHHHHT-B-SS
T ss_pred HHHHHHHHHHHHhCCeecCCCCE---EcC-----eeEEEEECHHHHHHHhhhHHHHHHHHHHHHHHHHHHCCCeecC
Confidence 34556777777776555554332 122 35889999999999876 67788888888887777765543
No 185
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=26.73 E-value=1.2e+02 Score=30.70 Aligned_cols=46 Identities=9% Similarity=0.183 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCCcCCcceEEEecCCcCc--HHHHHHHHhhhCCc
Q 043979 134 KCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRI--PKVQQLLQDFFNGK 179 (443)
Q Consensus 134 ~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~--p~v~~~l~~~f~~~ 179 (443)
.....++++|+++++.+++||+|.+-|=+++. +.=...|.+.|+..
T Consensus 261 ~~~~a~~~Al~~Agl~~~dId~v~~hgtgt~~~D~~E~~al~~~f~~~ 308 (392)
T PRK09185 261 GAILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAAVFGDG 308 (392)
T ss_pred HHHHHHHHHHHHcCCCHHHccEEEeCCCCCcCCCHHHHHHHHHHhCCC
Confidence 34578899999999999999999999988774 55557788889643
No 186
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=26.13 E-value=1.2e+02 Score=30.72 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCCcCCcceEEEecCCcCc--HHHHHHHHhhhCC
Q 043979 134 KCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRI--PKVQQLLQDFFNG 178 (443)
Q Consensus 134 ~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~--p~v~~~l~~~f~~ 178 (443)
.....++++|+++++++++||.|.+-|=++.. +.-...+.+.|++
T Consensus 276 ~~~~ai~~Al~~Agi~~~dId~ve~h~tgt~~~D~~E~~a~~~~~~~ 322 (407)
T TIGR03150 276 GAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGD 322 (407)
T ss_pred HHHHHHHHHHHHcCCCHhHCCEEeCcCCCCCCCCHHHHHHHHHHhcc
Confidence 45678899999999999999999999988754 5666778888964
No 187
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=25.68 E-value=2e+02 Score=29.42 Aligned_cols=45 Identities=9% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCc-CcHHHHHHHHhhh
Q 043979 129 MDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGST-RIPKVQQLLQDFF 176 (443)
Q Consensus 129 ~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGss-r~p~v~~~l~~~f 176 (443)
+-+..++.+.|-......+ ..+|.|+++||-. ..+.||+.+.+.+
T Consensus 307 ~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l 352 (404)
T TIGR00016 307 KMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEAL 352 (404)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 3344555555544443332 2499999999999 9999999999876
No 188
>PRK11546 zraP zinc resistance protein; Provisional
Probab=25.67 E-value=4.4e+02 Score=22.76 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHH-HhhcccchhhhCCCChHHHHHHHHHHHHHHHHhcCC-CCc-CHHHHHHHHHHHHHhH
Q 043979 330 GRLSKEEIERMV-MRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGN-QLA-EVDELEDKLKELEGLC 396 (443)
Q Consensus 330 ~~ls~eei~~~~-~r~~l~~~~~~~~~~~~e~~~l~~~~~~~~~Wl~~~-~~a-~~~~~~~kl~~L~~~~ 396 (443)
..||+|+...+. +++.... -+.+-|+.+..+=.++..-+..+ .|. ....+...+..|+...
T Consensus 42 ~~LT~EQQa~~q~I~~~f~~------~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 42 APLTTEQQAAWQKIHNDFYA------QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred ccCCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 468998877653 2222221 13455777777777777777664 322 2334444444444433
No 189
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=25.39 E-value=71 Score=27.52 Aligned_cols=61 Identities=25% Similarity=0.372 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHHH
Q 043979 130 DLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQAS 200 (443)
Q Consensus 130 ~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~ 200 (443)
.+.+++.+-..+.|...++..+++ .|+-|=|+-.+|++-+.+.+. -+.|-.|+.||.+.+.
T Consensus 20 ~I~~~Ll~ga~~~l~~~gv~~~~i-~v~~VPGa~EiP~a~~~l~~s---------~~~DavIaLG~VIrGe 80 (141)
T PLN02404 20 IITKNLLEGALETFKRYSVKEENI-DVVWVPGSFEIPVVAQRLAKS---------GKYDAILCIGAVIRGD 80 (141)
T ss_pred HHHHHHHHHHHHHHHHcCCCccce-EEEEcCcHHHHHHHHHHHHhc---------CCCCEEEEEEEEEeCC
Confidence 455666666667777888765555 456788999999998777532 2456677777777653
No 190
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=25.06 E-value=46 Score=36.87 Aligned_cols=19 Identities=5% Similarity=0.128 Sum_probs=12.1
Q ss_pred hHHHHHHHHHccCCCCCCC
Q 043979 395 LCYPIIVKMYEGSASGDVP 413 (443)
Q Consensus 395 ~~~~i~~R~~e~~~~~~~~ 413 (443)
...+|..|+...+|.|+.|
T Consensus 97 FYrsf~~r~s~~~g~~gag 115 (1588)
T KOG3570|consen 97 FYRSFQKRISKEKGEGGAG 115 (1588)
T ss_pred eehhhhhccchhccccccc
Confidence 3457777887777655444
No 191
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=24.87 E-value=1.2e+02 Score=30.20 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCc--HHHHHHHHhhhCC
Q 043979 131 LFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRI--PKVQQLLQDFFNG 178 (443)
Q Consensus 131 ~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~--p~v~~~l~~~f~~ 178 (443)
.-......++++|+++++++++|++|..-|=+|.. +.=.+.|++.|+.
T Consensus 204 ~~~~~~~ai~~AL~~Agl~p~dIdyIeaHgtgT~~~D~~E~~Ai~~~fg~ 253 (342)
T PRK14691 204 DGDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGE 253 (342)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHCCEEEecCCCCcCCCHHHHHHHHHHhCC
Confidence 34566788999999999999999999999988876 6667789999964
No 192
>PLN02405 hexokinase
Probab=24.70 E-value=1.9e+02 Score=30.53 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.7
Q ss_pred CCCcEEEEEEeCCceeEEEEEEEeCC
Q 043979 23 TGEKNVLIFDLGGGTFDVSLLMIEEG 48 (443)
Q Consensus 23 ~~~~~vlV~D~GggT~Dvsv~~~~~~ 48 (443)
.+...+|.+|+||.+|-|..+++.+.
T Consensus 92 ~E~G~flAlDlGGTNfRV~~V~L~g~ 117 (497)
T PLN02405 92 DEKGLFYALDLGGTNFRVLRVLLGGK 117 (497)
T ss_pred CcceeEEEEecCCceEEEEEEEEcCC
Confidence 35668999999999999999999863
No 193
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=24.62 E-value=1.1e+02 Score=30.88 Aligned_cols=46 Identities=17% Similarity=0.413 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCCcCCcceEEEecCCcCc--HHHHHHHHhhhCC
Q 043979 133 RKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRI--PKVQQLLQDFFNG 178 (443)
Q Consensus 133 ~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~--p~v~~~l~~~f~~ 178 (443)
......++++|+++++.+++|++|..-|=++.. +.=.+.|++.|+.
T Consensus 254 ~~~~~ai~~Al~~agi~p~dId~i~~hgtgt~~~D~~E~~al~~~fg~ 301 (381)
T PRK05952 254 KSAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQALFPH 301 (381)
T ss_pred HHHHHHHHHHHHHhCCCHHHeeEEEccCCCCCCCcHHHHHHHHHHcCC
Confidence 456788899999999999999999998877765 4556678889953
No 194
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.58 E-value=4.1e+02 Score=25.37 Aligned_cols=51 Identities=22% Similarity=0.177 Sum_probs=34.3
Q ss_pred cCCcceEEEecCCcCcHH---HHHHHHhhhCCccccccCCcchhhhhhhhhHHHHHh
Q 043979 150 KSQVHDVVLVSGSTRIPK---VQQLLQDFFNGKELCKSINPDEVVAYGAAVQASILS 203 (443)
Q Consensus 150 ~~~id~ViLvGGssr~p~---v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a~~l~ 203 (443)
....+.|+|.|--+-+.. |+..|.....++ . ..-|-++.+.|+|+.|.-..
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k--~-~~l~~esaaiG~a~IA~DI~ 319 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNK--V-AVLPPESAAIGLALIARDIA 319 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHHHH--H-hhcCchhhhhhhHHHHHHHH
Confidence 456888999886666665 777777655222 2 23345568999999887655
No 195
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=24.36 E-value=1.9e+02 Score=24.99 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=69.5
Q ss_pred EEEEEEeCCceeEEEEEEEeCCeeeehHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeee
Q 043979 27 NVLIFDLGGGTFDVSLLMIEEGIFEVKDFDNRLVNNFVAEFKRKHKIDISGNARALRRLRTAYERAKRTLSSTKQTTIEI 106 (443)
Q Consensus 27 ~vlV~D~GggT~Dvsv~~~~~~~~~v~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~E~~K~~LS~~~~~~i~i 106 (443)
+||-+|.|-.+|=.++++..++.+.++++... +...+. ..+..+..+....+++-..... ..+.+
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g~i-----------~t~~~~-~~~~rl~~I~~~l~~~i~~~~P---d~vai 65 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASGVI-----------RTSSDA-PLPSRLKTIYDGLNEVIDQFQP---DVVAI 65 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEeeEE-----------ECCCCC-CHHHHHHHHHHHHHHHHHHhCC---CEEEE
Confidence 37889999999999999887776655421100 000000 1122233333343343333321 23445
Q ss_pred ccccCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----cCCcceEEEecCCcCcHHHHHHHHhhhCCccc
Q 043979 107 DSLYEGIDFYATITRARFEVLNMDLFRKCMEHVEKCLRNSKID-----KSQVHDVVLVSGSTRIPKVQQLLQDFFNGKEL 181 (443)
Q Consensus 107 ~~~~~~~~~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~-----~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i 181 (443)
|..+-+.. .+..+ .+..+...+.-++...++. |..+...+.-=|...=--|+.++++.++-...
T Consensus 66 E~~~~~~n---------~~s~~--~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~KeqV~~mv~~~l~~~~~ 134 (154)
T cd00529 66 ERVFFAKN---------PDSAL--KLGQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADKDQVQHMVKRLLNLSEI 134 (154)
T ss_pred EEhhcccC---------hHHHH--HHHHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 43321111 11111 2334455566666665543 44455544321333335688999999953321
Q ss_pred cccCCcchhhhhhhhhHH
Q 043979 182 CKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 182 ~~~~~pdeaVa~GAa~~a 199 (443)
+.+.|.+=|.+.|+..
T Consensus 135 --~~~~d~aDAlaiA~~~ 150 (154)
T cd00529 135 --PKPDDAADALAVAITH 150 (154)
T ss_pred --CCCCCHHHHHHHHHHH
Confidence 2334555555555443
No 196
>PRK09604 UGMP family protein; Validated
Probab=24.04 E-value=1.4e+02 Score=29.53 Aligned_cols=46 Identities=7% Similarity=0.180 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHH
Q 043979 128 NMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQ 173 (443)
Q Consensus 128 ~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~ 173 (443)
.....+.+...|+++|+++++++.+||.|.+.-|-...+.+|--+.
T Consensus 48 ~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~ 93 (332)
T PRK09604 48 SRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVS 93 (332)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHH
Confidence 4556788889999999999999999999999999999998866543
No 197
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=24.02 E-value=1.6e+02 Score=28.55 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=37.3
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCc
Q 043979 118 TITRARFEVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGST 163 (443)
Q Consensus 118 ~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGss 163 (443)
.+|.++|++.+-|.+.+|.+.+++-|.+.++. .|-.|+..-|+.
T Consensus 219 eLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~--~vPmi~fakG~g 262 (359)
T KOG2872|consen 219 ELSPEDFEEFSLPYLRQIAEAVKKRLPELGLA--PVPMILFAKGSG 262 (359)
T ss_pred cCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCC--CCceEEEEcCcc
Confidence 67899999999999999999999999988654 367777777664
No 198
>PLN02932 3-ketoacyl-CoA synthase
Probab=23.92 E-value=1.8e+02 Score=30.49 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEec-CCcCcHHHHHHHHhhhC
Q 043979 122 ARFEVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVS-GSTRIPKVQQLLQDFFN 177 (443)
Q Consensus 122 ~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvG-Gssr~p~v~~~l~~~f~ 177 (443)
..++...+..-.-+...++++|+++++++++||.|+++= -..-.|.+-.+|.+.+|
T Consensus 139 ~~~~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lG 195 (478)
T PLN02932 139 QNLAVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFK 195 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhC
Confidence 345555555556667788999999999999999987532 33478999999999995
No 199
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.22 E-value=71 Score=30.51 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.2
Q ss_pred EEEEEEeCCceeEEEEEEE
Q 043979 27 NVLIFDLGGGTFDVSLLMI 45 (443)
Q Consensus 27 ~vlV~D~GggT~Dvsv~~~ 45 (443)
++|++|+|.||.|+-.+.-
T Consensus 2 kila~DvG~GTqDi~~~d~ 20 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDG 20 (342)
T ss_pred ceEEEEecCCceeEEEecC
Confidence 5899999999999977653
No 200
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=22.86 E-value=2.1e+02 Score=27.76 Aligned_cols=54 Identities=30% Similarity=0.416 Sum_probs=34.1
Q ss_pred CCcceEEEecCCcCcHH----HHHHHHhhhCC----ccc--cccCCcchhhhhhhhhHHHHHhC
Q 043979 151 SQVHDVVLVSGSTRIPK----VQQLLQDFFNG----KEL--CKSINPDEVVAYGAAVQASILSG 204 (443)
Q Consensus 151 ~~id~ViLvGGssr~p~----v~~~l~~~f~~----~~i--~~~~~pdeaVa~GAa~~a~~l~~ 204 (443)
...+.|+|.|-++++|- |++.|++.|.. ..+ ....---.-.|.|||+.|.-++|
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAG 335 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAG 335 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcc
Confidence 35788999999999865 55666666621 111 11122223468899998876665
No 201
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=22.55 E-value=1.7e+02 Score=28.63 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhh
Q 043979 126 VLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFF 176 (443)
Q Consensus 126 ~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f 176 (443)
.++...+..+...++++|+++++++++||.+++--++- .+.+.+.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~L~~~g~~~~did~~i~H~~~~---~~~~~~~~~l 279 (338)
T PRK09258 232 GLLKEGVELAVDTWEAFLAQLGWAVEQVDRVICHQVGA---AHTRAILKAL 279 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEecCCCCH---HHHHHHHHHh
Confidence 34445556677789999999999999999999987763 3445666665
No 202
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=22.34 E-value=2e+02 Score=28.14 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhh
Q 043979 130 DLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFF 176 (443)
Q Consensus 130 ~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f 176 (443)
..+..+...++++|++++++++|||.+++--++- .+.+.+.+.+
T Consensus 223 ~~~~~~~~~i~~~L~~~g~~~~did~~~~hq~~~---~~~~~~~~~l 266 (326)
T CHL00203 223 FAVFQVPAVIIKCLNALNISIDEVDWFILHQANK---RILEAIANRL 266 (326)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCH---HHHHHHHHHh
Confidence 3345677788999999999999999999988873 3455567666
No 203
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=22.21 E-value=1.8e+02 Score=29.57 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCCcCCcceEEEecCC----cCcHHHHHHHHhhhCC
Q 043979 133 RKCMEHVEKCLRNSKIDKSQVHDVVLVSGS----TRIPKVQQLLQDFFNG 178 (443)
Q Consensus 133 ~~i~~~i~~~l~~a~~~~~~id~ViLvGGs----sr~p~v~~~l~~~f~~ 178 (443)
+-..+.++++|+++++++.+||.+++ |.. ...+.+...+.+.++.
T Consensus 31 ~L~~~A~~~Al~dagl~~~dID~~i~-~~~~~~~~~~~~~a~~l~~~lG~ 79 (392)
T PRK06065 31 ELAWEAASKALDEAGLELKDIDCVVI-GSAPDAFDGVHMKGEYLSHGSGG 79 (392)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEE-eccCCcccccccHHHHHHHHcCC
Confidence 33456789999999999999999886 321 1245567777777754
No 204
>PRK07058 acetate kinase; Provisional
Probab=21.82 E-value=2.6e+02 Score=28.53 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCc-CcHHHHHHHHhhh
Q 043979 128 NMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGST-RIPKVQQLLQDFF 176 (443)
Q Consensus 128 ~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGss-r~p~v~~~l~~~f 176 (443)
++-+..++.+.|-...... ..+|.|+++||-. ..+.||+.+.+.+
T Consensus 298 ~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 298 LDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 3444555555555554433 3599999999999 9999999999876
No 205
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=21.75 E-value=1.5e+02 Score=31.38 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHH
Q 043979 127 LNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLL 172 (443)
Q Consensus 127 l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l 172 (443)
......+.+...|+++|++++++..+||.|-...|-..++.++--+
T Consensus 44 ~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~gPg~~~~l~vg~ 89 (535)
T PRK09605 44 AAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQGPGLGPCLRVVA 89 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCCCCcHhhHHHHH
Confidence 3455667888899999999999999999999999998888887443
No 206
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=21.72 E-value=1.7e+02 Score=30.01 Aligned_cols=45 Identities=7% Similarity=0.172 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCCcCCcceEEEecCCcCc--HHHHHHHHhhhCC
Q 043979 134 KCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRI--PKVQQLLQDFFNG 178 (443)
Q Consensus 134 ~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~--p~v~~~l~~~f~~ 178 (443)
.....++++|+++++++++|++|..-|=++.. +.=.+.|++.|+.
T Consensus 287 ~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E~~Al~~~fg~ 333 (418)
T PRK07910 287 RAGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINNALGG 333 (418)
T ss_pred HHHHHHHHHHHHhCCCHHHCCEEEcCCcCCCCCCHHHHHHHHHHhCC
Confidence 45678999999999999999999999977755 6667788999964
No 207
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=20.85 E-value=3.1e+02 Score=26.52 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCC----cCCcceEEE
Q 043979 133 RKCMEHVEKCLRNSKID----KSQVHDVVL 158 (443)
Q Consensus 133 ~~i~~~i~~~l~~a~~~----~~~id~ViL 158 (443)
+-.....+++|++++++ +.+++.|++
T Consensus 13 ~l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~ 42 (332)
T cd00825 13 ILGFEAAERAIADAGLSREYQKNPIVGVVV 42 (332)
T ss_pred HHHHHHHHHHHHHcCCCccccCCCCEEEEE
Confidence 44567889999999999 888998874
No 208
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=20.70 E-value=2.7e+02 Score=27.23 Aligned_cols=78 Identities=22% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCC--cceEEEecC-CcCcHHHHHHHHhhhCCc---cccccCCcchhhhhhhhhH
Q 043979 125 EVLNMDLFRKCMEHVEKCLRNSKIDKSQ--VHDVVLVSG-STRIPKVQQLLQDFFNGK---ELCKSINPDEVVAYGAAVQ 198 (443)
Q Consensus 125 e~l~~~~~~~i~~~i~~~l~~a~~~~~~--id~ViLvGG-ssr~p~v~~~l~~~f~~~---~i~~~~~pdeaVa~GAa~~ 198 (443)
.+++...=+-+-..|..+|.+......+ .=.|++||| ......+++-....+... +-.....|.+.-|.|||+.
T Consensus 234 ~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~l 313 (336)
T KOG1794|consen 234 AEIFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAIL 313 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHH
Q ss_pred HHHH
Q 043979 199 ASIL 202 (443)
Q Consensus 199 a~~l 202 (443)
|+.+
T Consensus 314 aa~~ 317 (336)
T KOG1794|consen 314 AASL 317 (336)
T ss_pred hhhh
No 209
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=20.66 E-value=76 Score=31.39 Aligned_cols=20 Identities=45% Similarity=0.635 Sum_probs=17.7
Q ss_pred CcEEEEEEeCCceeEEEEEE
Q 043979 25 EKNVLIFDLGGGTFDVSLLM 44 (443)
Q Consensus 25 ~~~vlV~D~GggT~Dvsv~~ 44 (443)
...++=+|+||||+..|++.
T Consensus 144 ~t~v~NlDIGGGTtN~slFD 163 (473)
T COG4819 144 LTRVLNLDIGGGTTNYSLFD 163 (473)
T ss_pred ceEEEEEeccCCccceeeec
Confidence 56799999999999999965
No 210
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=20.58 E-value=1.8e+02 Score=29.78 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhhCCccccccCCcchhhhhhhhhHH
Q 043979 132 FRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFFNGKELCKSINPDEVVAYGAAVQA 199 (443)
Q Consensus 132 ~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f~~~~i~~~~~pdeaVa~GAa~~a 199 (443)
.+.+.+.++++|++++++.+++..+..+|... ..+...|+...+ ++--.|.++||.++.
T Consensus 178 ~~~a~~~l~~~l~~~Gl~~~di~~i~~TGyGR------~~i~~~~~ad~i---v~EItaha~GA~~L~ 236 (404)
T TIGR03286 178 IESAEEAVERALEEAGVSLEDVEAIGTTGYGR------FTIGEHFGADLI---QEELTVNSKGAVYLA 236 (404)
T ss_pred HHHHHHHHHHHHHHcCCCccceeEEEeeeecH------HHHhhhcCCCce---EEEEhhHHHHHHHhc
Confidence 56677888899999999888999999999773 344455632221 223357788887653
No 211
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=20.30 E-value=2e+02 Score=26.87 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecC-CcCcHHHHHHHHhhhC
Q 043979 125 EVLNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSG-STRIPKVQQLLQDFFN 177 (443)
Q Consensus 125 e~l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGG-ssr~p~v~~~l~~~f~ 177 (443)
+-..+...+-..+.++++|+++++++.+|++|+.|=- +-..|.+--.|-+.+|
T Consensus 94 ~~~~~~a~~L~~~Aa~~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~l~~~Lg 147 (226)
T PF00195_consen 94 ALYAEEAPPLAEEAARKALAEAGLDPSDITHLVTVSCTGIAAPGLDARLINRLG 147 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-GGGECEEEEEESSSSECS-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcccceEEEEecCCcCCCchhHHHHhcCC
Confidence 3334445555677788899999999999999987542 1467999999998884
No 212
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=20.07 E-value=2.3e+02 Score=27.59 Aligned_cols=47 Identities=4% Similarity=0.099 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCCcCcHHHHHHHHhhh
Q 043979 127 LNMDLFRKCMEHVEKCLRNSKIDKSQVHDVVLVSGSTRIPKVQQLLQDFF 176 (443)
Q Consensus 127 l~~~~~~~i~~~i~~~l~~a~~~~~~id~ViLvGGssr~p~v~~~l~~~f 176 (443)
++...+..+...++++|+++++++++||.+++-=++ +.+.+.+.+.+
T Consensus 221 ~~~~~~~~~~~~~~~~L~~~gl~~~did~~~~h~~~---~~~~~~~~~~l 267 (326)
T PRK05963 221 VFTEAVRMMSGASQNVLASAAMTPQDIDRFFPHQAN---ARIVDKVCETI 267 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEeCCCC---HHHHHHHHHHc
Confidence 344455666778899999999999999999996666 44555666666
No 213
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=20.04 E-value=1.4e+02 Score=29.35 Aligned_cols=37 Identities=22% Similarity=0.466 Sum_probs=27.7
Q ss_pred EEEEeCCceeEEEEEEEeCCeeeeh-----------HHHHHHHHHHHH
Q 043979 29 LIFDLGGGTFDVSLLMIEEGIFEVK-----------DFDNRLVNNFVA 65 (443)
Q Consensus 29 lV~D~GggT~Dvsv~~~~~~~~~v~-----------d~D~~l~~~l~~ 65 (443)
||-|+||..+-+.++.......+.. +|+..|.+++.+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~l~~ 48 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIRRYPSADFPSFEDALADYLAE 48 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEEEEEGCCCCHHHHHHHHHHHH
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccEEEecCCcCCHHHHHHHHHHh
Confidence 6899999999999999887762222 677777776653
Done!