Query 043980
Match_columns 233
No_of_seqs 193 out of 1955
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:13:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3E-52 6.6E-57 414.8 18.0 211 21-233 9-236 (1153)
2 PLN03194 putative disease resi 100.0 1.7E-39 3.7E-44 257.1 10.4 139 21-176 23-172 (187)
3 PF01582 TIR: TIR domain; Int 99.9 3.6E-24 7.8E-29 165.9 0.4 129 27-155 1-138 (141)
4 smart00255 TIR Toll - interleu 99.9 7.3E-22 1.6E-26 152.1 9.4 131 24-156 1-134 (140)
5 PF13676 TIR_2: TIR domain; PD 99.7 1.3E-18 2.9E-23 127.1 2.4 87 27-119 1-87 (102)
6 KOG3678 SARM protein (with ste 98.9 5.4E-09 1.2E-13 93.4 8.0 91 21-117 609-708 (832)
7 KOG4658 Apoptotic ATPase [Sign 98.6 5.3E-08 1.1E-12 95.3 4.3 48 184-233 161-211 (889)
8 PF08937 DUF1863: MTH538 TIR-l 98.5 1.7E-07 3.7E-12 71.4 5.7 88 25-117 1-106 (130)
9 PF08357 SEFIR: SEFIR domain; 98.0 1.1E-05 2.4E-10 62.7 5.2 64 26-89 2-70 (150)
10 PF05496 RuvB_N: Holliday junc 97.6 9.6E-05 2.1E-09 61.2 4.9 56 177-232 20-78 (233)
11 PTZ00202 tuzin; Provisional 97.6 0.00012 2.5E-09 66.4 5.6 51 177-227 258-309 (550)
12 TIGR02928 orc1/cdc6 family rep 97.5 0.00016 3.5E-09 64.1 5.6 52 178-229 12-65 (365)
13 PRK00080 ruvB Holliday junctio 97.5 0.00011 2.5E-09 64.4 4.0 54 177-230 21-77 (328)
14 PRK00411 cdc6 cell division co 97.4 0.00018 3.9E-09 64.5 4.4 51 179-229 28-80 (394)
15 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00039 8.4E-09 61.6 4.0 48 182-229 52-103 (361)
16 PRK13342 recombination factor 97.1 0.00054 1.2E-08 62.1 3.8 50 180-231 11-63 (413)
17 TIGR01242 26Sp45 26S proteasom 96.9 0.00082 1.8E-08 59.9 3.7 52 180-231 121-183 (364)
18 PF10137 TIR-like: Predicted n 96.9 0.0033 7.2E-08 47.5 6.3 60 26-88 1-61 (125)
19 PRK03992 proteasome-activating 96.8 0.0013 2.8E-08 59.3 4.4 52 180-231 130-192 (389)
20 PRK04195 replication factor C 96.8 0.001 2.2E-08 61.6 3.7 52 177-228 10-63 (482)
21 COG2256 MGS1 ATPase related to 96.8 0.0013 2.8E-08 58.7 4.1 49 179-232 28-76 (436)
22 cd02019 NK Nucleoside/nucleoti 96.7 0.0016 3.4E-08 43.8 3.1 23 206-228 1-23 (69)
23 PRK12402 replication factor C 96.7 0.0027 5.9E-08 55.4 4.9 49 179-229 13-61 (337)
24 PHA02544 44 clamp loader, smal 96.6 0.0027 5.8E-08 55.2 4.8 52 177-229 17-68 (316)
25 TIGR03015 pepcterm_ATPase puta 96.6 0.0019 4.1E-08 54.6 3.6 26 204-229 43-68 (269)
26 CHL00095 clpC Clp protease ATP 96.6 0.0027 5.9E-08 62.5 5.1 47 181-229 179-225 (821)
27 COG0466 Lon ATP-dependent Lon 96.6 0.0029 6.3E-08 60.1 4.8 54 179-232 321-378 (782)
28 PRK09270 nucleoside triphospha 96.5 0.0048 1.1E-07 51.3 5.3 28 202-229 31-58 (229)
29 PRK13341 recombination factor 96.5 0.0023 5E-08 61.9 3.8 51 180-232 27-80 (725)
30 PRK15455 PrkA family serine pr 96.5 0.0035 7.6E-08 58.8 4.8 49 181-229 76-128 (644)
31 PLN03025 replication factor C 96.5 0.0039 8.5E-08 54.5 4.8 49 178-228 10-58 (319)
32 COG2255 RuvB Holliday junction 96.5 0.0036 7.7E-08 53.6 4.1 55 177-231 22-79 (332)
33 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0044 9.5E-08 61.2 5.2 50 178-229 184-233 (852)
34 PRK00440 rfc replication facto 96.4 0.0048 1E-07 53.4 4.9 48 179-228 15-62 (319)
35 PRK09376 rho transcription ter 96.4 0.0028 6.2E-08 56.8 3.3 30 204-233 169-199 (416)
36 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.0053 1.2E-07 50.5 4.7 40 187-228 23-62 (226)
37 PRK14961 DNA polymerase III su 96.3 0.0062 1.3E-07 54.3 5.3 52 177-229 12-63 (363)
38 PTZ00361 26 proteosome regulat 96.3 0.0049 1.1E-07 56.3 4.4 51 181-231 183-244 (438)
39 PRK10865 protein disaggregatio 96.3 0.006 1.3E-07 60.3 5.2 47 180-228 177-223 (857)
40 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0062 1.3E-07 46.6 4.2 40 189-228 7-46 (133)
41 TIGR02639 ClpA ATP-dependent C 96.2 0.0055 1.2E-07 59.6 4.7 48 179-228 180-227 (731)
42 KOG2004 Mitochondrial ATP-depe 96.2 0.0057 1.2E-07 58.2 4.3 53 180-232 410-466 (906)
43 PRK11331 5-methylcytosine-spec 96.2 0.006 1.3E-07 55.7 4.2 45 181-229 175-219 (459)
44 PRK06893 DNA replication initi 96.2 0.0094 2E-07 49.7 5.1 25 204-228 39-63 (229)
45 PTZ00112 origin recognition co 96.1 0.0077 1.7E-07 59.1 5.0 51 179-229 753-806 (1164)
46 TIGR02903 spore_lon_C ATP-depe 96.1 0.0068 1.5E-07 57.8 4.6 50 177-228 150-199 (615)
47 KOG2028 ATPase related to the 96.1 0.0064 1.4E-07 53.9 4.0 44 179-227 142-185 (554)
48 PRK05896 DNA polymerase III su 96.1 0.0086 1.9E-07 56.6 5.1 52 177-229 12-63 (605)
49 TIGR03346 chaperone_ClpB ATP-d 96.1 0.0085 1.8E-07 59.3 5.3 47 180-228 172-218 (852)
50 PRK08903 DnaA regulatory inact 96.1 0.011 2.3E-07 49.0 5.1 25 204-228 42-66 (227)
51 PRK07003 DNA polymerase III su 96.1 0.0079 1.7E-07 58.1 4.6 51 178-229 13-63 (830)
52 PRK14962 DNA polymerase III su 96.1 0.0093 2E-07 55.1 5.0 50 178-228 11-60 (472)
53 PTZ00454 26S protease regulato 96.0 0.008 1.7E-07 54.3 4.2 52 179-230 143-205 (398)
54 PRK14956 DNA polymerase III su 95.9 0.0094 2E-07 54.9 4.5 51 178-229 15-65 (484)
55 TIGR00602 rad24 checkpoint pro 95.9 0.0077 1.7E-07 57.4 4.0 52 177-228 80-134 (637)
56 PRK14955 DNA polymerase III su 95.9 0.012 2.6E-07 53.2 5.0 52 177-229 12-63 (397)
57 PRK14957 DNA polymerase III su 95.9 0.012 2.5E-07 55.3 4.9 51 178-229 13-63 (546)
58 PRK14963 DNA polymerase III su 95.9 0.011 2.3E-07 55.1 4.6 50 179-229 12-61 (504)
59 PRK14960 DNA polymerase III su 95.9 0.011 2.5E-07 56.3 4.8 51 178-229 12-62 (702)
60 PRK11034 clpA ATP-dependent Cl 95.8 0.014 3.1E-07 56.8 5.3 46 181-228 186-231 (758)
61 PLN02318 phosphoribulokinase/u 95.8 0.013 2.8E-07 55.2 4.8 33 196-228 57-89 (656)
62 PRK05439 pantothenate kinase; 95.8 0.02 4.3E-07 50.0 5.5 28 202-229 84-111 (311)
63 CHL00181 cbbX CbbX; Provisiona 95.7 0.017 3.6E-07 49.9 4.9 24 205-228 60-83 (287)
64 TIGR01243 CDC48 AAA family ATP 95.7 0.011 2.4E-07 57.6 4.2 49 181-229 178-237 (733)
65 PRK09435 membrane ATPase/prote 95.7 0.019 4.2E-07 50.6 5.2 38 192-229 44-81 (332)
66 PF05673 DUF815: Protein of un 95.7 0.013 2.9E-07 49.2 4.0 53 177-229 23-77 (249)
67 TIGR00064 ftsY signal recognit 95.7 0.022 4.9E-07 48.8 5.5 26 203-228 71-96 (272)
68 TIGR02881 spore_V_K stage V sp 95.6 0.011 2.4E-07 50.2 3.4 25 204-228 42-66 (261)
69 PLN00020 ribulose bisphosphate 95.6 0.012 2.5E-07 52.6 3.4 30 202-231 146-175 (413)
70 TIGR00763 lon ATP-dependent pr 95.6 0.017 3.7E-07 56.6 4.9 50 181-230 320-373 (775)
71 TIGR00554 panK_bact pantothena 95.6 0.016 3.6E-07 50.1 4.2 27 202-228 60-86 (290)
72 PRK14949 DNA polymerase III su 95.5 0.017 3.7E-07 56.9 4.7 52 178-230 13-64 (944)
73 TIGR02880 cbbX_cfxQ probable R 95.5 0.016 3.5E-07 50.0 4.1 23 206-228 60-82 (284)
74 PLN02348 phosphoribulokinase 95.5 0.025 5.4E-07 50.8 5.2 28 202-229 47-74 (395)
75 TIGR03689 pup_AAA proteasome A 95.5 0.016 3.4E-07 54.0 4.0 49 181-229 182-241 (512)
76 TIGR00750 lao LAO/AO transport 95.5 0.027 5.9E-07 48.9 5.3 36 193-228 23-58 (300)
77 PRK09087 hypothetical protein; 95.4 0.021 4.5E-07 47.6 4.3 24 204-227 44-67 (226)
78 COG1222 RPT1 ATP-dependent 26S 95.4 0.015 3.3E-07 51.3 3.6 52 180-231 150-212 (406)
79 COG1474 CDC6 Cdc6-related prot 95.4 0.027 6E-07 50.3 5.3 52 179-230 15-68 (366)
80 PRK14958 DNA polymerase III su 95.4 0.02 4.3E-07 53.4 4.6 51 178-229 13-63 (509)
81 PLN02200 adenylate kinase fami 95.4 0.017 3.7E-07 48.4 3.7 26 203-228 42-67 (234)
82 COG1124 DppF ABC-type dipeptid 95.4 0.014 3.1E-07 48.8 3.0 29 198-226 27-55 (252)
83 PRK14974 cell division protein 95.4 0.032 6.8E-07 49.3 5.4 27 203-229 139-165 (336)
84 TIGR02397 dnaX_nterm DNA polym 95.4 0.031 6.6E-07 49.3 5.4 50 179-229 12-61 (355)
85 PLN02796 D-glycerate 3-kinase 95.4 0.016 3.5E-07 51.2 3.6 27 203-229 99-125 (347)
86 PRK08691 DNA polymerase III su 95.3 0.02 4.4E-07 54.9 4.4 51 177-228 12-62 (709)
87 TIGR00767 rho transcription te 95.3 0.016 3.4E-07 52.3 3.5 28 204-231 168-195 (415)
88 PRK08099 bifunctional DNA-bind 95.3 0.015 3.2E-07 52.6 3.3 26 203-228 218-243 (399)
89 KOG0744 AAA+-type ATPase [Post 95.3 0.016 3.5E-07 50.6 3.2 25 204-228 177-201 (423)
90 CHL00176 ftsH cell division pr 95.3 0.015 3.2E-07 55.7 3.2 51 179-229 181-241 (638)
91 PRK12323 DNA polymerase III su 95.3 0.023 5E-07 54.2 4.4 50 179-229 14-63 (700)
92 TIGR01241 FtsH_fam ATP-depende 95.2 0.022 4.7E-07 52.9 4.3 49 181-229 55-113 (495)
93 PRK09112 DNA polymerase III su 95.2 0.033 7.2E-07 49.5 5.2 53 177-230 19-71 (351)
94 PRK14951 DNA polymerase III su 95.2 0.028 6E-07 53.6 4.9 50 178-228 13-62 (618)
95 PRK10787 DNA-binding ATP-depen 95.2 0.023 4.9E-07 55.7 4.4 51 180-230 321-375 (784)
96 PRK06645 DNA polymerase III su 95.2 0.026 5.7E-07 52.5 4.6 51 178-229 18-68 (507)
97 PRK14964 DNA polymerase III su 95.2 0.028 6E-07 52.1 4.7 50 178-228 10-59 (491)
98 PRK05537 bifunctional sulfate 95.2 0.042 9.2E-07 52.0 6.0 49 181-229 369-417 (568)
99 PRK08084 DNA replication initi 95.2 0.021 4.5E-07 47.8 3.5 26 204-229 45-70 (235)
100 PRK11889 flhF flagellar biosyn 95.2 0.034 7.4E-07 50.2 5.0 26 203-228 240-265 (436)
101 PRK07994 DNA polymerase III su 95.2 0.029 6.2E-07 53.7 4.8 52 177-229 12-63 (647)
102 PRK08727 hypothetical protein; 95.2 0.043 9.2E-07 45.8 5.4 24 205-228 42-65 (233)
103 PRK14954 DNA polymerase III su 95.2 0.03 6.5E-07 53.4 4.9 52 177-229 12-63 (620)
104 PRK14969 DNA polymerase III su 95.1 0.029 6.3E-07 52.6 4.7 50 179-229 14-63 (527)
105 PF03193 DUF258: Protein of un 95.1 0.034 7.5E-07 43.9 4.4 35 188-227 24-58 (161)
106 COG1703 ArgK Putative periplas 95.1 0.035 7.5E-07 48.0 4.6 38 191-228 38-75 (323)
107 PRK08154 anaerobic benzoate ca 95.1 0.018 3.9E-07 50.2 3.0 27 203-229 132-158 (309)
108 PRK14970 DNA polymerase III su 95.1 0.038 8.3E-07 49.2 5.1 52 177-229 13-64 (367)
109 PRK05201 hslU ATP-dependent pr 95.1 0.034 7.3E-07 50.5 4.7 51 180-230 14-76 (443)
110 PRK12289 GTPase RsgA; Reviewed 95.1 0.13 2.9E-06 45.7 8.5 33 190-227 163-195 (352)
111 PRK09111 DNA polymerase III su 95.0 0.032 7E-07 53.0 4.7 52 177-229 20-71 (598)
112 PRK13531 regulatory ATPase Rav 95.0 0.033 7.2E-07 51.4 4.6 45 180-228 19-63 (498)
113 PRK10416 signal recognition pa 95.0 0.032 7E-07 48.9 4.3 27 203-229 113-139 (318)
114 PRK06620 hypothetical protein; 95.0 0.022 4.7E-07 47.1 3.1 23 205-227 45-67 (214)
115 PF14532 Sigma54_activ_2: Sigm 94.9 0.012 2.6E-07 44.8 1.4 44 184-227 1-44 (138)
116 cd00820 PEPCK_HprK Phosphoenol 94.9 0.027 5.9E-07 41.3 3.1 23 203-225 14-36 (107)
117 PRK14952 DNA polymerase III su 94.9 0.04 8.6E-07 52.2 4.8 50 179-229 11-60 (584)
118 PF06068 TIP49: TIP49 C-termin 94.8 0.043 9.2E-07 48.9 4.6 53 179-231 22-77 (398)
119 PRK05342 clpX ATP-dependent pr 94.8 0.045 9.8E-07 49.7 5.0 26 205-230 109-134 (412)
120 TIGR03499 FlhF flagellar biosy 94.8 0.031 6.8E-07 48.1 3.8 26 203-228 193-218 (282)
121 TIGR01243 CDC48 AAA family ATP 94.8 0.036 7.8E-07 54.0 4.5 50 181-230 453-513 (733)
122 COG0542 clpA ATP-binding subun 94.8 0.04 8.8E-07 53.5 4.7 47 180-229 169-216 (786)
123 PRK12377 putative replication 94.8 0.033 7.1E-07 47.1 3.7 26 204-229 101-126 (248)
124 PRK10463 hydrogenase nickel in 94.8 0.037 8E-07 47.8 4.0 29 202-230 102-130 (290)
125 PRK00771 signal recognition pa 94.7 0.059 1.3E-06 49.3 5.5 27 203-229 94-120 (437)
126 TIGR00390 hslU ATP-dependent p 94.7 0.041 8.9E-07 49.9 4.4 50 181-230 12-73 (441)
127 PRK14950 DNA polymerase III su 94.7 0.047 1E-06 51.9 5.0 51 178-229 13-63 (585)
128 PRK07952 DNA replication prote 94.7 0.05 1.1E-06 45.9 4.6 25 204-228 99-123 (244)
129 COG4608 AppF ABC-type oligopep 94.7 0.026 5.6E-07 48.0 2.8 26 202-227 37-62 (268)
130 PF03215 Rad17: Rad17 cell cyc 94.7 0.036 7.8E-07 51.8 4.0 48 181-228 19-69 (519)
131 TIGR03596 GTPase_YlqF ribosome 94.7 0.23 5E-06 42.5 8.8 23 204-226 118-140 (276)
132 COG1224 TIP49 DNA helicase TIP 94.6 0.065 1.4E-06 47.5 5.2 52 179-230 37-91 (450)
133 PRK14489 putative bifunctional 94.6 0.05 1.1E-06 48.6 4.7 28 203-230 204-231 (366)
134 PRK05563 DNA polymerase III su 94.6 0.056 1.2E-06 51.0 5.2 52 177-229 12-63 (559)
135 PLN02165 adenylate isopentenyl 94.6 0.032 7E-07 49.1 3.3 26 204-229 43-68 (334)
136 TIGR00362 DnaA chromosomal rep 94.5 0.056 1.2E-06 48.8 4.9 26 204-229 136-161 (405)
137 PRK14953 DNA polymerase III su 94.5 0.056 1.2E-06 50.2 4.8 51 178-229 13-63 (486)
138 PRK07471 DNA polymerase III su 94.5 0.074 1.6E-06 47.6 5.4 52 177-229 15-66 (365)
139 PRK05642 DNA replication initi 94.5 0.041 9E-07 46.0 3.6 25 204-228 45-69 (234)
140 PRK09183 transposase/IS protei 94.5 0.035 7.7E-07 47.2 3.2 24 204-227 102-125 (259)
141 cd01858 NGP_1 NGP-1. Autoanti 94.5 0.059 1.3E-06 41.9 4.2 24 204-227 102-125 (157)
142 PF00308 Bac_DnaA: Bacterial d 94.4 0.069 1.5E-06 44.2 4.8 27 203-229 33-59 (219)
143 PLN02199 shikimate kinase 94.4 0.05 1.1E-06 47.1 4.1 26 204-229 102-127 (303)
144 PRK08116 hypothetical protein; 94.4 0.039 8.6E-07 47.1 3.4 25 205-229 115-139 (268)
145 PLN03046 D-glycerate 3-kinase; 94.4 0.041 8.9E-07 49.9 3.6 26 203-228 211-236 (460)
146 cd01121 Sms Sms (bacterial rad 94.4 0.067 1.5E-06 47.9 5.0 39 190-228 68-106 (372)
147 TIGR03594 GTPase_EngA ribosome 94.4 0.63 1.4E-05 42.2 11.4 23 204-226 172-194 (429)
148 KOG0991 Replication factor C, 94.4 0.055 1.2E-06 45.4 4.0 46 181-228 27-72 (333)
149 TIGR01650 PD_CobS cobaltochela 94.4 0.096 2.1E-06 46.0 5.7 45 181-229 45-89 (327)
150 PRK04220 2-phosphoglycerate ki 94.4 0.044 9.4E-07 47.6 3.6 26 204-229 92-117 (301)
151 PRK06305 DNA polymerase III su 94.3 0.074 1.6E-06 48.9 5.2 52 177-229 13-64 (451)
152 PRK10584 putative ABC transpor 94.3 0.039 8.5E-07 45.6 3.1 25 203-227 35-59 (228)
153 PF02367 UPF0079: Uncharacteri 94.3 0.06 1.3E-06 40.6 3.8 26 203-228 14-39 (123)
154 PRK06526 transposase; Provisio 94.3 0.043 9.4E-07 46.5 3.3 24 204-227 98-121 (254)
155 KOG1969 DNA replication checkp 94.3 0.036 7.9E-07 53.1 3.0 25 203-227 325-349 (877)
156 TIGR02639 ClpA ATP-dependent C 94.3 0.073 1.6E-06 51.9 5.3 50 180-229 453-509 (731)
157 TIGR01425 SRP54_euk signal rec 94.3 0.06 1.3E-06 49.1 4.3 25 204-228 100-124 (429)
158 PRK07764 DNA polymerase III su 94.2 0.057 1.2E-06 53.2 4.5 50 179-229 13-62 (824)
159 PRK06647 DNA polymerase III su 94.2 0.065 1.4E-06 50.6 4.7 52 177-229 12-63 (563)
160 PRK10536 hypothetical protein; 94.2 0.078 1.7E-06 45.1 4.7 43 181-227 55-97 (262)
161 PRK00149 dnaA chromosomal repl 94.2 0.074 1.6E-06 48.8 4.9 27 204-230 148-174 (450)
162 cd01133 F1-ATPase_beta F1 ATP 94.2 0.048 1E-06 46.7 3.4 29 204-232 69-97 (274)
163 cd03258 ABC_MetN_methionine_tr 94.2 0.044 9.5E-07 45.4 3.1 25 203-227 30-54 (233)
164 PRK11629 lolD lipoprotein tran 94.2 0.044 9.5E-07 45.5 3.1 25 203-227 34-58 (233)
165 COG4240 Predicted kinase [Gene 94.2 0.051 1.1E-06 45.4 3.3 28 203-230 49-76 (300)
166 PHA02244 ATPase-like protein 94.2 0.052 1.1E-06 48.5 3.7 24 207-230 122-145 (383)
167 TIGR00764 lon_rel lon-related 94.1 0.055 1.2E-06 51.6 4.1 47 180-230 17-63 (608)
168 PRK11034 clpA ATP-dependent Cl 94.1 0.063 1.4E-06 52.4 4.5 50 180-229 457-513 (758)
169 TIGR00416 sms DNA repair prote 94.1 0.087 1.9E-06 48.5 5.2 41 188-228 78-118 (454)
170 TIGR02902 spore_lonB ATP-depen 94.1 0.06 1.3E-06 50.5 4.2 47 179-227 63-109 (531)
171 PRK03003 GTP-binding protein D 94.1 0.65 1.4E-05 42.9 11.0 25 203-227 210-234 (472)
172 TIGR00382 clpX endopeptidase C 94.1 0.041 8.9E-07 49.9 3.0 25 205-229 117-141 (413)
173 TIGR02211 LolD_lipo_ex lipopro 94.1 0.047 1E-06 44.8 3.1 25 203-227 30-54 (221)
174 PRK05703 flhF flagellar biosyn 94.1 0.087 1.9E-06 48.1 5.1 25 204-228 221-245 (424)
175 COG1223 Predicted ATPase (AAA+ 94.0 0.052 1.1E-06 46.2 3.2 49 180-228 120-175 (368)
176 COG1123 ATPase components of v 94.0 0.043 9.4E-07 51.1 3.0 23 204-226 317-339 (539)
177 PRK10247 putative ABC transpor 94.0 0.05 1.1E-06 45.0 3.1 26 202-227 31-56 (225)
178 cd03257 ABC_NikE_OppD_transpor 94.0 0.05 1.1E-06 44.8 3.0 25 203-227 30-54 (228)
179 TIGR01817 nifA Nif-specific re 94.0 0.053 1.1E-06 50.8 3.5 49 179-227 194-242 (534)
180 PF13245 AAA_19: Part of AAA d 93.9 0.065 1.4E-06 36.7 3.1 25 204-228 10-35 (76)
181 PRK10619 histidine/lysine/argi 93.9 0.051 1.1E-06 45.8 3.1 26 202-227 29-54 (257)
182 PRK07133 DNA polymerase III su 93.9 0.078 1.7E-06 51.3 4.5 50 178-228 15-64 (725)
183 cd01878 HflX HflX subfamily. 93.9 0.051 1.1E-06 43.9 2.9 26 202-227 39-64 (204)
184 PRK11300 livG leucine/isoleuci 93.8 0.055 1.2E-06 45.5 3.2 25 203-227 30-54 (255)
185 PRK14722 flhF flagellar biosyn 93.8 0.06 1.3E-06 48.2 3.5 25 204-228 137-161 (374)
186 PRK12288 GTPase RsgA; Reviewed 93.8 0.38 8.2E-06 42.8 8.5 33 190-227 196-228 (347)
187 PF01695 IstB_IS21: IstB-like 93.8 0.069 1.5E-06 42.8 3.5 23 205-227 48-70 (178)
188 TIGR02012 tigrfam_recA protein 93.8 0.12 2.7E-06 45.3 5.3 38 190-227 40-78 (321)
189 KOG0727 26S proteasome regulat 93.8 0.089 1.9E-06 44.7 4.2 48 181-228 155-213 (408)
190 PRK10867 signal recognition pa 93.8 0.12 2.6E-06 47.3 5.4 26 203-228 99-124 (433)
191 PRK06921 hypothetical protein; 93.8 0.063 1.4E-06 45.9 3.4 26 204-229 117-142 (266)
192 TIGR02324 CP_lyasePhnL phospho 93.7 0.059 1.3E-06 44.4 3.1 25 203-227 33-57 (224)
193 COG0714 MoxR-like ATPases [Gen 93.7 0.08 1.7E-06 46.5 4.1 45 182-230 25-69 (329)
194 cd03232 ABC_PDR_domain2 The pl 93.7 0.061 1.3E-06 43.3 3.1 24 203-226 32-55 (192)
195 CHL00081 chlI Mg-protoporyphyr 93.7 0.085 1.8E-06 46.9 4.2 47 179-227 15-61 (350)
196 TIGR01526 nadR_NMN_Atrans nico 93.7 0.064 1.4E-06 47.2 3.3 25 204-228 162-186 (325)
197 PRK14242 phosphate transporter 93.7 0.061 1.3E-06 45.2 3.1 26 202-227 30-55 (253)
198 cd03266 ABC_NatA_sodium_export 93.7 0.062 1.3E-06 44.0 3.1 25 203-227 30-54 (218)
199 TIGR02782 TrbB_P P-type conjug 93.7 0.06 1.3E-06 46.8 3.1 25 205-229 133-157 (299)
200 KOG0651 26S proteasome regulat 93.7 0.062 1.3E-06 46.8 3.1 29 204-232 166-194 (388)
201 KOG0733 Nuclear AAA ATPase (VC 93.7 0.075 1.6E-06 50.1 3.8 51 181-231 190-250 (802)
202 cd03223 ABCD_peroxisomal_ALDP 93.6 0.067 1.5E-06 42.1 3.1 25 203-227 26-50 (166)
203 cd03267 ABC_NatA_like Similar 93.6 0.063 1.4E-06 44.7 3.1 25 203-227 46-70 (236)
204 PF00437 T2SE: Type II/IV secr 93.6 0.071 1.5E-06 45.3 3.4 40 189-228 112-151 (270)
205 PRK10575 iron-hydroxamate tran 93.6 0.057 1.2E-06 45.8 2.8 25 203-227 36-60 (265)
206 PF13271 DUF4062: Domain of un 93.6 0.3 6.5E-06 33.9 6.0 67 26-93 1-68 (83)
207 PRK11022 dppD dipeptide transp 93.6 0.062 1.4E-06 47.2 3.1 27 202-228 31-57 (326)
208 TIGR02238 recomb_DMC1 meiotic 93.6 0.087 1.9E-06 46.1 4.0 36 190-225 82-117 (313)
209 PRK11247 ssuB aliphatic sulfon 93.6 0.065 1.4E-06 45.5 3.1 25 203-227 37-61 (257)
210 TIGR02236 recomb_radA DNA repa 93.6 0.11 2.5E-06 45.1 4.7 37 191-227 82-118 (310)
211 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.5 0.07 1.5E-06 41.0 3.0 25 203-227 25-49 (144)
212 PRK14948 DNA polymerase III su 93.5 0.11 2.3E-06 49.8 4.8 50 179-229 14-63 (620)
213 PRK14274 phosphate ABC transpo 93.5 0.067 1.5E-06 45.2 3.1 26 203-228 37-62 (259)
214 PRK10646 ADP-binding protein; 93.5 0.12 2.6E-06 40.4 4.3 41 188-228 12-52 (153)
215 PRK14965 DNA polymerase III su 93.5 0.11 2.5E-06 49.2 4.9 51 178-229 13-63 (576)
216 PRK15093 antimicrobial peptide 93.5 0.066 1.4E-06 47.1 3.1 27 202-228 31-57 (330)
217 PTZ00035 Rad51 protein; Provis 93.5 0.11 2.4E-06 45.9 4.5 37 190-226 104-140 (337)
218 PRK12422 chromosomal replicati 93.5 0.072 1.6E-06 48.9 3.4 26 204-229 141-166 (445)
219 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.5 0.068 1.5E-06 44.2 3.0 25 203-227 47-71 (224)
220 PRK14248 phosphate ABC transpo 93.5 0.071 1.5E-06 45.3 3.2 24 203-226 46-69 (268)
221 PRK14238 phosphate transporter 93.4 0.072 1.6E-06 45.4 3.2 26 203-228 49-74 (271)
222 COG4107 PhnK ABC-type phosphon 93.4 0.061 1.3E-06 43.2 2.5 26 203-228 31-56 (258)
223 cd03294 ABC_Pro_Gly_Bertaine T 93.4 0.071 1.5E-06 45.4 3.1 25 203-227 49-73 (269)
224 PRK10865 protein disaggregatio 93.4 0.11 2.4E-06 51.5 4.9 49 180-228 567-622 (857)
225 PRK10744 pstB phosphate transp 93.4 0.072 1.6E-06 45.0 3.1 25 203-227 38-62 (260)
226 KOG0726 26S proteasome regulat 93.4 0.091 2E-06 45.5 3.6 50 181-230 185-245 (440)
227 cd03216 ABC_Carb_Monos_I This 93.4 0.08 1.7E-06 41.6 3.1 25 203-227 25-49 (163)
228 PRK13645 cbiO cobalt transport 93.4 0.071 1.5E-06 45.9 3.1 25 203-227 36-60 (289)
229 PRK11701 phnK phosphonate C-P 93.4 0.073 1.6E-06 44.9 3.1 26 202-227 30-55 (258)
230 cd03228 ABCC_MRP_Like The MRP 93.4 0.08 1.7E-06 41.8 3.1 25 203-227 27-51 (171)
231 PRK14239 phosphate transporter 93.3 0.073 1.6E-06 44.6 3.1 24 203-226 30-53 (252)
232 PRK11831 putative ABC transpor 93.3 0.072 1.6E-06 45.3 3.0 25 203-227 32-56 (269)
233 PRK14243 phosphate transporter 93.3 0.076 1.6E-06 45.1 3.1 26 202-227 34-59 (264)
234 PRK15056 manganese/iron transp 93.3 0.073 1.6E-06 45.4 3.1 25 203-227 32-56 (272)
235 PRK13649 cbiO cobalt transport 93.3 0.072 1.6E-06 45.6 3.0 25 203-227 32-56 (280)
236 PRK14255 phosphate ABC transpo 93.3 0.076 1.6E-06 44.6 3.1 24 203-226 30-53 (252)
237 PRK11308 dppF dipeptide transp 93.3 0.074 1.6E-06 46.8 3.1 25 203-227 40-64 (327)
238 cd03233 ABC_PDR_domain1 The pl 93.3 0.075 1.6E-06 43.2 2.9 27 202-228 31-57 (202)
239 PRK09473 oppD oligopeptide tra 93.3 0.074 1.6E-06 46.8 3.1 25 203-227 41-65 (330)
240 CHL00131 ycf16 sulfate ABC tra 93.3 0.074 1.6E-06 44.6 3.0 25 202-226 31-55 (252)
241 PRK06835 DNA replication prote 93.3 0.11 2.3E-06 45.9 4.0 24 205-228 184-207 (329)
242 PRK12724 flagellar biosynthesi 93.2 0.092 2E-06 47.8 3.7 24 204-227 223-246 (432)
243 PRK08451 DNA polymerase III su 93.2 0.14 3E-06 48.1 5.0 50 178-228 11-60 (535)
244 PRK14261 phosphate ABC transpo 93.2 0.078 1.7E-06 44.6 3.1 24 203-226 31-54 (253)
245 cd03234 ABCG_White The White s 93.2 0.086 1.9E-06 43.5 3.2 26 203-228 32-57 (226)
246 COG0444 DppD ABC-type dipeptid 93.2 0.083 1.8E-06 46.0 3.2 27 202-228 29-55 (316)
247 PRK14259 phosphate ABC transpo 93.2 0.079 1.7E-06 45.1 3.1 25 203-227 38-62 (269)
248 PRK11823 DNA repair protein Ra 93.2 0.15 3.3E-06 46.8 5.1 40 189-228 65-104 (446)
249 PRK14273 phosphate ABC transpo 93.2 0.083 1.8E-06 44.4 3.1 27 202-228 31-57 (254)
250 PRK13477 bifunctional pantoate 93.2 0.084 1.8E-06 49.2 3.4 25 204-228 284-308 (512)
251 PRK13543 cytochrome c biogenes 93.2 0.083 1.8E-06 43.3 3.1 26 202-227 35-60 (214)
252 PRK14260 phosphate ABC transpo 93.2 0.083 1.8E-06 44.6 3.1 26 202-227 31-56 (259)
253 cd03369 ABCC_NFT1 Domain 2 of 93.2 0.086 1.9E-06 42.9 3.1 26 202-227 32-57 (207)
254 cd03248 ABCC_TAP TAP, the Tran 93.1 0.085 1.8E-06 43.5 3.1 26 202-227 38-63 (226)
255 PRK13632 cbiO cobalt transport 93.1 0.082 1.8E-06 45.0 3.1 26 202-227 33-58 (271)
256 PRK14088 dnaA chromosomal repl 93.1 0.086 1.9E-06 48.3 3.4 26 204-229 130-155 (440)
257 PLN03187 meiotic recombination 93.1 0.13 2.7E-06 45.7 4.3 36 190-225 112-147 (344)
258 COG2607 Predicted ATPase (AAA+ 93.1 0.13 2.8E-06 43.3 4.0 53 178-230 57-111 (287)
259 PRK14237 phosphate transporter 93.1 0.086 1.9E-06 44.8 3.2 26 203-228 45-70 (267)
260 CHL00195 ycf46 Ycf46; Provisio 93.1 0.12 2.6E-06 48.0 4.3 49 181-229 228-284 (489)
261 cd01856 YlqF YlqF. Proteins o 93.1 1.5 3.2E-05 34.4 10.1 22 205-226 116-137 (171)
262 TIGR02788 VirB11 P-type DNA tr 93.1 0.087 1.9E-06 45.9 3.2 26 203-228 143-168 (308)
263 cd01855 YqeH YqeH. YqeH is an 93.1 0.11 2.3E-06 41.7 3.5 39 185-227 112-150 (190)
264 PRK14235 phosphate transporter 93.0 0.09 1.9E-06 44.7 3.2 26 203-228 44-69 (267)
265 PRK14265 phosphate ABC transpo 93.0 0.088 1.9E-06 45.0 3.1 24 203-226 45-68 (274)
266 TIGR02239 recomb_RAD51 DNA rep 93.0 0.12 2.7E-06 45.2 4.1 39 188-226 80-118 (316)
267 PRK06995 flhF flagellar biosyn 93.0 0.097 2.1E-06 48.4 3.5 25 204-228 256-280 (484)
268 PRK12723 flagellar biosynthesi 93.0 0.11 2.4E-06 46.8 3.8 25 204-228 174-198 (388)
269 cd00983 recA RecA is a bacter 93.0 0.16 3.4E-06 44.7 4.7 38 190-227 40-78 (325)
270 TIGR03238 dnd_assoc_3 dnd syst 93.0 0.076 1.6E-06 48.9 2.8 22 202-223 30-51 (504)
271 PRK13640 cbiO cobalt transport 93.0 0.089 1.9E-06 45.1 3.1 27 202-228 31-57 (282)
272 KOG0730 AAA+-type ATPase [Post 93.0 0.14 3E-06 48.6 4.5 52 181-232 434-496 (693)
273 PRK11614 livF leucine/isoleuci 93.0 0.084 1.8E-06 43.9 2.8 24 203-226 30-53 (237)
274 PRK14244 phosphate ABC transpo 92.9 0.094 2E-06 44.0 3.1 25 203-227 30-54 (251)
275 COG1484 DnaC DNA replication p 92.9 0.1 2.3E-06 44.2 3.4 27 203-229 104-130 (254)
276 PRK12726 flagellar biosynthesi 92.9 0.13 2.7E-06 46.3 4.0 26 203-228 205-230 (407)
277 COG1245 Predicted ATPase, RNas 92.8 0.088 1.9E-06 48.1 2.9 26 203-228 366-391 (591)
278 PRK15079 oligopeptide ABC tran 92.8 0.095 2.1E-06 46.2 3.1 25 203-227 46-70 (331)
279 PRK08181 transposase; Validate 92.8 0.11 2.3E-06 44.6 3.3 24 205-228 107-130 (269)
280 PRK05022 anaerobic nitric oxid 92.8 0.12 2.7E-06 48.2 4.0 49 179-227 185-233 (509)
281 PRK13546 teichoic acids export 92.8 0.096 2.1E-06 44.6 3.0 25 203-227 49-73 (264)
282 PRK14271 phosphate ABC transpo 92.8 0.099 2.1E-06 44.7 3.1 25 203-227 46-70 (276)
283 PRK04301 radA DNA repair and r 92.8 0.16 3.4E-06 44.5 4.4 37 191-227 89-125 (317)
284 PRK14236 phosphate transporter 92.8 0.099 2.2E-06 44.6 3.1 25 203-227 50-74 (272)
285 PRK13648 cbiO cobalt transport 92.8 0.099 2.2E-06 44.4 3.1 26 202-227 33-58 (269)
286 KOG0738 AAA+-type ATPase [Post 92.8 0.12 2.6E-06 46.4 3.6 50 181-230 212-271 (491)
287 PRK12727 flagellar biosynthesi 92.8 0.11 2.3E-06 48.7 3.4 25 204-228 350-374 (559)
288 PRK12337 2-phosphoglycerate ki 92.8 0.11 2.4E-06 47.7 3.5 26 203-228 254-279 (475)
289 TIGR02769 nickel_nikE nickel i 92.7 0.1 2.2E-06 44.3 3.1 25 203-227 36-60 (265)
290 PRK11153 metN DL-methionine tr 92.7 0.099 2.1E-06 46.3 3.1 25 203-227 30-54 (343)
291 PRK13650 cbiO cobalt transport 92.7 0.1 2.2E-06 44.7 3.1 25 203-227 32-56 (279)
292 cd01853 Toc34_like Toc34-like 92.7 0.15 3.3E-06 43.1 4.1 30 198-227 25-54 (249)
293 PRK10419 nikE nickel transport 92.7 0.1 2.2E-06 44.4 3.0 25 203-227 37-61 (268)
294 PRK13765 ATP-dependent proteas 92.7 0.14 3.1E-06 49.0 4.3 48 177-228 27-74 (637)
295 cd00267 ABC_ATPase ABC (ATP-bi 92.7 0.11 2.5E-06 40.2 3.1 25 203-227 24-48 (157)
296 TIGR03346 chaperone_ClpB ATP-d 92.7 0.16 3.5E-06 50.4 4.8 49 180-228 564-619 (852)
297 PRK13900 type IV secretion sys 92.7 0.079 1.7E-06 46.8 2.3 26 203-228 159-184 (332)
298 cd03291 ABCC_CFTR1 The CFTR su 92.6 0.11 2.3E-06 44.8 3.1 25 203-227 62-86 (282)
299 PRK15429 formate hydrogenlyase 92.6 0.11 2.5E-06 50.2 3.7 48 180-227 375-422 (686)
300 PRK10253 iron-enterobactin tra 92.6 0.098 2.1E-06 44.4 2.9 25 203-227 32-56 (265)
301 PRK14721 flhF flagellar biosyn 92.6 0.12 2.7E-06 47.0 3.6 25 203-227 190-214 (420)
302 PRK09518 bifunctional cytidyla 92.6 1.2 2.6E-05 43.4 10.6 24 204-227 450-473 (712)
303 TIGR02314 ABC_MetN D-methionin 92.6 0.11 2.3E-06 46.1 3.1 25 203-227 30-54 (343)
304 PLN02674 adenylate kinase 92.6 0.21 4.5E-06 42.2 4.7 23 205-227 32-54 (244)
305 PRK13647 cbiO cobalt transport 92.6 0.11 2.4E-06 44.4 3.1 25 203-227 30-54 (274)
306 PRK15112 antimicrobial peptide 92.5 0.11 2.4E-06 44.1 3.1 25 203-227 38-62 (267)
307 PRK14268 phosphate ABC transpo 92.5 0.11 2.4E-06 43.8 3.1 25 203-227 37-61 (258)
308 PRK14252 phosphate ABC transpo 92.5 0.12 2.5E-06 43.9 3.1 26 202-227 40-65 (265)
309 PRK14959 DNA polymerase III su 92.5 0.16 3.6E-06 48.3 4.3 50 179-229 14-63 (624)
310 PRK14258 phosphate ABC transpo 92.5 0.12 2.6E-06 43.8 3.1 26 202-227 31-56 (261)
311 cd01129 PulE-GspE PulE/GspE Th 92.5 0.19 4.1E-06 42.9 4.4 36 190-228 69-104 (264)
312 PF08423 Rad51: Rad51; InterP 92.4 0.13 2.8E-06 43.6 3.3 38 190-227 24-61 (256)
313 cd03250 ABCC_MRP_domain1 Domai 92.4 0.12 2.7E-06 41.8 3.1 26 202-227 29-54 (204)
314 PRK09354 recA recombinase A; P 92.4 0.25 5.4E-06 43.9 5.2 38 190-227 45-83 (349)
315 KOG0062 ATPase component of AB 92.4 0.089 1.9E-06 48.6 2.4 23 204-226 106-128 (582)
316 PRK14275 phosphate ABC transpo 92.4 0.12 2.6E-06 44.5 3.1 25 203-227 64-88 (286)
317 PRK13646 cbiO cobalt transport 92.4 0.12 2.6E-06 44.4 3.1 26 202-227 31-56 (286)
318 cd01854 YjeQ_engC YjeQ/EngC. 92.3 0.16 3.5E-06 43.8 3.8 33 190-227 152-184 (287)
319 PRK03003 GTP-binding protein D 92.2 0.17 3.7E-06 46.7 4.1 25 202-226 36-60 (472)
320 TIGR02982 heterocyst_DevA ABC 92.2 0.14 2.9E-06 42.2 3.1 24 203-226 30-53 (220)
321 PRK13636 cbiO cobalt transport 92.2 0.13 2.8E-06 44.2 3.1 25 203-227 31-55 (283)
322 PRK13641 cbiO cobalt transport 92.2 0.13 2.9E-06 44.2 3.1 25 203-227 32-56 (287)
323 COG1136 SalX ABC-type antimicr 92.2 0.14 3.1E-06 42.6 3.1 24 202-225 29-52 (226)
324 TIGR02655 circ_KaiC circadian 92.1 0.23 5E-06 46.1 4.8 40 188-227 247-286 (484)
325 PRK13851 type IV secretion sys 92.1 0.095 2.1E-06 46.5 2.2 26 203-228 161-186 (344)
326 PRK13637 cbiO cobalt transport 92.1 0.14 3E-06 44.1 3.1 25 203-227 32-56 (287)
327 TIGR00157 ribosome small subun 92.0 0.21 4.5E-06 42.1 4.1 33 190-227 111-143 (245)
328 PRK14254 phosphate ABC transpo 92.0 0.14 3E-06 44.0 3.1 25 203-227 64-88 (285)
329 PRK00098 GTPase RsgA; Reviewed 92.0 0.18 3.9E-06 43.7 3.8 33 190-227 155-187 (298)
330 PRK13651 cobalt transporter AT 92.0 0.14 3E-06 44.6 3.1 25 203-227 32-56 (305)
331 PRK13631 cbiO cobalt transport 92.0 0.14 3.1E-06 44.9 3.1 25 203-227 51-75 (320)
332 CHL00095 clpC Clp protease ATP 92.0 0.29 6.3E-06 48.4 5.6 49 180-228 508-563 (821)
333 PRK13635 cbiO cobalt transport 92.0 0.14 3.1E-06 43.8 3.1 25 203-227 32-56 (279)
334 PRK14264 phosphate ABC transpo 92.0 0.14 3.1E-06 44.4 3.1 26 203-228 70-95 (305)
335 cd03213 ABCG_EPDR ABCG transpo 92.0 0.15 3.2E-06 41.2 3.0 26 202-227 33-58 (194)
336 PRK13643 cbiO cobalt transport 92.0 0.15 3.2E-06 44.0 3.1 25 203-227 31-55 (288)
337 PRK14263 phosphate ABC transpo 91.9 0.15 3.2E-06 43.2 3.1 26 202-227 32-57 (261)
338 PLN03186 DNA repair protein RA 91.9 0.22 4.8E-06 44.1 4.3 40 187-226 106-145 (342)
339 PRK08939 primosomal protein Dn 91.9 0.17 3.6E-06 44.2 3.4 25 204-228 156-180 (306)
340 TIGR03878 thermo_KaiC_2 KaiC d 91.9 0.12 2.5E-06 43.9 2.4 24 203-226 35-58 (259)
341 PF13555 AAA_29: P-loop contai 91.9 0.2 4.3E-06 33.0 3.0 21 206-226 25-45 (62)
342 COG1072 CoaA Panthothenate kin 91.9 0.35 7.5E-06 41.4 5.2 29 202-230 80-108 (283)
343 KOG0733 Nuclear AAA ATPase (VC 91.8 0.13 2.8E-06 48.6 2.8 28 205-232 546-573 (802)
344 KOG0989 Replication factor C, 91.8 0.24 5.2E-06 43.1 4.2 51 177-229 32-82 (346)
345 PF05621 TniB: Bacterial TniB 91.8 0.28 6.1E-06 42.6 4.6 39 190-228 46-85 (302)
346 COG0468 RecA RecA/RadA recombi 91.8 0.24 5.3E-06 42.6 4.2 37 191-227 47-83 (279)
347 PRK14087 dnaA chromosomal repl 91.7 0.31 6.7E-06 44.8 5.1 26 204-229 141-166 (450)
348 PRK05973 replicative DNA helic 91.7 0.27 5.8E-06 41.3 4.3 25 203-227 63-87 (237)
349 PRK10820 DNA-binding transcrip 91.7 0.17 3.7E-06 47.4 3.4 48 179-227 202-250 (520)
350 COG1245 Predicted ATPase, RNas 91.6 0.13 2.8E-06 47.1 2.5 29 203-231 99-127 (591)
351 PRK11388 DNA-binding transcrip 91.6 0.17 3.7E-06 48.5 3.5 48 180-227 324-371 (638)
352 PRK13633 cobalt transporter AT 91.6 0.16 3.5E-06 43.5 3.1 26 202-227 34-59 (280)
353 PF06309 Torsin: Torsin; Inte 91.6 0.49 1.1E-05 35.8 5.2 46 182-227 26-76 (127)
354 PRK10261 glutathione transport 91.6 0.15 3.3E-06 48.7 3.1 25 203-227 41-65 (623)
355 PRK15134 microcin C ABC transp 91.6 0.15 3.3E-06 47.6 3.1 26 203-228 34-59 (529)
356 COG3842 PotA ABC-type spermidi 91.6 0.16 3.6E-06 45.0 3.1 24 203-226 30-53 (352)
357 PRK11860 bifunctional 3-phosph 91.6 0.25 5.4E-06 47.7 4.5 27 203-229 441-467 (661)
358 PRK09302 circadian clock prote 91.6 0.36 7.9E-06 45.0 5.5 40 187-226 14-53 (509)
359 PRK13642 cbiO cobalt transport 91.6 0.17 3.7E-06 43.3 3.1 25 203-227 32-56 (277)
360 COG4167 SapF ABC-type antimicr 91.6 0.17 3.6E-06 41.1 2.8 25 203-227 38-62 (267)
361 TIGR00991 3a0901s02IAP34 GTP-b 91.5 0.28 6E-06 42.9 4.4 37 191-227 22-61 (313)
362 TIGR02524 dot_icm_DotB Dot/Icm 91.5 0.2 4.4E-06 44.7 3.6 25 204-228 134-158 (358)
363 PRK13894 conjugal transfer ATP 91.5 0.17 3.8E-06 44.4 3.1 25 204-228 148-172 (319)
364 cd03288 ABCC_SUR2 The SUR doma 91.5 0.18 3.9E-06 42.6 3.1 25 203-227 46-70 (257)
365 PRK06851 hypothetical protein; 91.5 0.23 4.9E-06 44.5 3.8 25 204-228 214-238 (367)
366 TIGR03345 VI_ClpV1 type VI sec 91.4 0.4 8.8E-06 47.6 5.9 49 180-228 565-620 (852)
367 PRK00093 GTP-binding protein D 91.4 4.3 9.2E-05 36.9 12.2 24 203-226 172-195 (435)
368 PRK15439 autoinducer 2 ABC tra 91.4 0.17 3.7E-06 47.2 3.1 25 203-227 36-60 (510)
369 PRK12608 transcription termina 91.4 0.2 4.4E-06 44.8 3.4 26 205-230 134-159 (380)
370 PRK10923 glnG nitrogen regulat 91.3 0.23 5.1E-06 45.5 4.0 47 181-227 138-184 (469)
371 PRK13634 cbiO cobalt transport 91.3 0.19 4.1E-06 43.3 3.1 26 202-227 31-56 (290)
372 TIGR02329 propionate_PrpR prop 91.3 0.2 4.3E-06 47.0 3.5 47 181-227 212-258 (526)
373 PRK15424 propionate catabolism 91.2 0.21 4.5E-06 47.0 3.5 47 181-227 219-265 (538)
374 TIGR00959 ffh signal recogniti 91.2 0.29 6.2E-06 44.7 4.4 25 204-228 99-123 (428)
375 cd02033 BchX Chlorophyllide re 91.2 0.27 5.9E-06 43.3 4.1 27 202-228 29-55 (329)
376 PRK13549 xylose transporter AT 91.2 0.19 4E-06 46.8 3.2 26 202-227 29-54 (506)
377 COG4172 ABC-type uncharacteriz 91.2 0.15 3.4E-06 46.0 2.5 25 204-228 313-337 (534)
378 PRK13537 nodulation ABC transp 91.2 0.19 4.2E-06 43.7 3.1 25 203-227 32-56 (306)
379 TIGR02868 CydC thiol reductant 91.1 0.18 3.9E-06 47.1 3.1 24 203-226 360-383 (529)
380 PRK13409 putative ATPase RIL; 91.1 0.18 3.9E-06 48.0 3.1 25 203-227 364-388 (590)
381 COG0464 SpoVK ATPases of the A 91.1 0.16 3.5E-06 47.1 2.7 29 203-231 275-303 (494)
382 COG1131 CcmA ABC-type multidru 91.1 0.21 4.5E-06 43.3 3.2 26 203-228 30-55 (293)
383 PRK13409 putative ATPase RIL; 91.1 0.18 3.9E-06 48.0 3.0 26 202-227 97-122 (590)
384 KOG0731 AAA+-type ATPase conta 91.1 0.27 5.8E-06 47.7 4.1 49 179-227 309-367 (774)
385 PRK10261 glutathione transport 91.1 0.19 4.1E-06 48.1 3.1 25 203-227 349-373 (623)
386 PRK14257 phosphate ABC transpo 91.0 0.2 4.4E-06 44.1 3.1 26 203-228 107-132 (329)
387 PRK11432 fbpC ferric transport 91.0 0.2 4.4E-06 44.5 3.1 24 203-226 31-54 (351)
388 PRK13549 xylose transporter AT 91.0 0.18 3.9E-06 46.9 2.9 25 203-227 287-311 (506)
389 PRK10070 glycine betaine trans 91.0 0.2 4.3E-06 45.4 3.1 25 203-227 53-77 (400)
390 PRK14971 DNA polymerase III su 91.0 0.37 7.9E-06 46.1 5.0 52 177-229 13-64 (614)
391 PRK09700 D-allose transporter 91.0 0.19 4E-06 46.8 3.0 25 203-227 288-312 (510)
392 PRK09700 D-allose transporter 90.9 0.18 3.9E-06 46.9 2.8 26 202-227 29-54 (510)
393 PRK10982 galactose/methyl gala 90.9 0.18 3.8E-06 46.7 2.7 25 203-227 273-297 (491)
394 PRK13536 nodulation factor exp 90.9 0.22 4.7E-06 44.1 3.1 25 203-227 66-90 (340)
395 PRK15134 microcin C ABC transp 90.9 0.2 4.3E-06 46.9 3.1 24 203-226 311-334 (529)
396 PRK14246 phosphate ABC transpo 90.8 0.22 4.8E-06 42.1 3.1 25 203-227 35-59 (257)
397 cd01857 HSR1_MMR1 HSR1/MMR1. 90.8 0.21 4.6E-06 38.0 2.7 35 69-104 3-37 (141)
398 cd01859 MJ1464 MJ1464. This f 90.8 0.42 9.1E-06 36.8 4.4 41 185-226 83-123 (156)
399 COG1127 Ttg2A ABC-type transpo 90.6 0.21 4.5E-06 42.0 2.6 30 199-228 29-58 (263)
400 PRK11819 putative ABC transpor 90.6 0.21 4.6E-06 47.0 3.0 24 204-227 350-373 (556)
401 PRK15439 autoinducer 2 ABC tra 90.6 0.2 4.3E-06 46.7 2.8 25 203-227 288-312 (510)
402 PRK15064 ABC transporter ATP-b 90.6 0.22 4.7E-06 46.6 3.0 25 203-227 344-368 (530)
403 PRK09866 hypothetical protein; 90.6 0.26 5.7E-06 47.1 3.5 40 187-226 52-91 (741)
404 PF08298 AAA_PrkA: PrkA AAA do 90.6 0.36 7.8E-06 42.8 4.2 49 180-228 60-112 (358)
405 COG5192 BMS1 GTP-binding prote 90.6 0.25 5.5E-06 46.3 3.3 26 204-229 69-94 (1077)
406 PRK11819 putative ABC transpor 90.5 0.22 4.8E-06 46.9 3.1 27 202-228 31-57 (556)
407 PF13481 AAA_25: AAA domain; P 90.5 0.32 7E-06 38.7 3.7 24 205-228 33-56 (193)
408 COG2274 SunT ABC-type bacterio 90.5 0.21 4.6E-06 48.5 3.0 25 202-226 497-521 (709)
409 PRK10762 D-ribose transporter 90.5 0.22 4.7E-06 46.3 3.0 24 204-227 278-301 (501)
410 COG1419 FlhF Flagellar GTP-bin 90.5 0.4 8.7E-06 43.2 4.4 20 204-223 203-223 (407)
411 TIGR03269 met_CoM_red_A2 methy 90.4 0.23 5E-06 46.3 3.1 25 203-227 309-333 (520)
412 TIGR01420 pilT_fam pilus retra 90.4 0.33 7.1E-06 43.0 3.9 26 204-229 122-147 (343)
413 PHA02624 large T antigen; Prov 90.4 0.47 1E-05 45.1 5.0 29 200-228 427-455 (647)
414 KOG1942 DNA helicase, TBP-inte 90.4 0.45 9.7E-06 41.4 4.5 52 179-230 36-90 (456)
415 TIGR03018 pepcterm_TyrKin exop 90.4 0.43 9.3E-06 38.9 4.3 26 203-228 34-60 (207)
416 TIGR01663 PNK-3'Pase polynucle 90.4 0.33 7.1E-06 45.5 4.0 26 202-227 367-392 (526)
417 PRK09452 potA putrescine/sperm 90.4 0.25 5.5E-06 44.3 3.1 24 203-226 39-62 (375)
418 PRK00652 lpxK tetraacyldisacch 90.3 0.32 6.8E-06 42.9 3.7 28 203-230 48-77 (325)
419 PRK11607 potG putrescine trans 90.3 0.26 5.6E-06 44.3 3.1 23 204-226 45-67 (377)
420 PRK13833 conjugal transfer pro 90.3 0.26 5.7E-06 43.3 3.1 23 206-228 146-168 (323)
421 PRK05506 bifunctional sulfate 90.2 0.29 6.2E-06 47.0 3.6 26 204-229 460-485 (632)
422 COG1134 TagH ABC-type polysacc 90.2 0.28 6.1E-06 41.2 3.1 25 203-227 52-76 (249)
423 TIGR03719 ABC_ABC_ChvD ATP-bin 90.1 0.23 5E-06 46.8 2.8 25 203-227 347-371 (552)
424 PRK11147 ABC transporter ATPas 90.1 0.25 5.4E-06 47.4 3.0 24 204-227 345-368 (635)
425 TIGR03815 CpaE_hom_Actino heli 90.1 0.63 1.4E-05 40.6 5.3 26 203-228 92-118 (322)
426 COG1066 Sms Predicted ATP-depe 90.0 0.51 1.1E-05 42.7 4.7 42 189-230 78-119 (456)
427 PRK10938 putative molybdenum t 90.0 0.25 5.5E-06 45.7 2.9 24 203-226 285-308 (490)
428 PRK12269 bifunctional cytidyla 90.0 0.3 6.6E-06 48.4 3.6 25 205-229 35-59 (863)
429 PRK10636 putative ABC transpor 89.9 0.26 5.6E-06 47.3 3.0 25 203-227 337-361 (638)
430 PRK11288 araG L-arabinose tran 89.9 0.24 5.2E-06 46.0 2.8 25 203-227 278-302 (501)
431 TIGR02633 xylG D-xylose ABC tr 89.9 0.26 5.7E-06 45.7 2.9 25 203-227 285-309 (500)
432 COG1123 ATPase components of v 89.9 0.26 5.6E-06 46.1 2.8 26 202-227 33-58 (539)
433 COG4618 ArpD ABC-type protease 89.9 0.26 5.7E-06 45.6 2.8 24 203-226 361-384 (580)
434 TIGR03719 ABC_ABC_ChvD ATP-bin 89.8 0.27 6E-06 46.3 3.1 26 202-227 29-54 (552)
435 COG0488 Uup ATPase components 89.8 0.27 5.8E-06 46.2 2.9 25 204-228 348-372 (530)
436 PRK04841 transcriptional regul 89.8 0.42 9.2E-06 47.3 4.5 44 179-227 12-55 (903)
437 PRK11176 lipid transporter ATP 89.7 0.27 5.9E-06 46.4 3.0 25 203-227 368-392 (582)
438 TIGR03600 phage_DnaB phage rep 89.7 0.62 1.3E-05 42.3 5.2 47 181-228 172-218 (421)
439 PLN03073 ABC transporter F fam 89.7 0.27 5.8E-06 47.9 3.0 24 203-226 202-225 (718)
440 KOG0734 AAA+-type ATPase conta 89.6 0.34 7.4E-06 45.3 3.4 48 180-227 303-360 (752)
441 cd01882 BMS1 Bms1. Bms1 is an 89.6 0.33 7.2E-06 40.2 3.1 25 203-227 38-62 (225)
442 TIGR03258 PhnT 2-aminoethylpho 89.6 0.32 6.8E-06 43.5 3.1 24 203-226 30-53 (362)
443 TIGR02858 spore_III_AA stage I 89.6 0.47 1E-05 40.7 4.0 27 203-229 110-136 (270)
444 PRK01889 GTPase RsgA; Reviewed 89.6 0.5 1.1E-05 42.1 4.4 35 189-227 184-218 (356)
445 PRK14723 flhF flagellar biosyn 89.5 0.36 7.9E-06 47.1 3.6 25 204-228 185-209 (767)
446 PLN02772 guanylate kinase 89.5 0.38 8.2E-06 43.4 3.5 26 203-228 134-159 (398)
447 cd01849 YlqF_related_GTPase Yl 89.4 0.5 1.1E-05 36.5 3.8 25 203-227 99-123 (155)
448 COG0802 Predicted ATPase or ki 89.4 0.61 1.3E-05 36.2 4.2 41 188-228 9-49 (149)
449 COG0542 clpA ATP-binding subun 89.4 0.51 1.1E-05 46.1 4.5 50 180-229 490-546 (786)
450 PRK10733 hflB ATP-dependent me 89.3 0.31 6.7E-06 46.9 3.0 24 206-229 187-210 (644)
451 COG1132 MdlB ABC-type multidru 89.3 0.3 6.6E-06 46.0 2.9 24 203-226 354-377 (567)
452 KOG2878 Predicted kinase [Gene 89.3 0.22 4.8E-06 40.9 1.7 26 203-228 30-55 (282)
453 TIGR03415 ABC_choXWV_ATP choli 89.2 0.35 7.5E-06 43.6 3.1 24 204-227 50-73 (382)
454 PLN03073 ABC transporter F fam 89.2 0.32 7E-06 47.4 3.0 24 204-227 535-558 (718)
455 PF11868 DUF3388: Protein of u 89.1 0.49 1.1E-05 37.3 3.4 32 193-226 45-78 (192)
456 PRK13545 tagH teichoic acids e 89.1 0.35 7.5E-06 45.4 3.1 25 203-227 49-73 (549)
457 TIGR03797 NHPM_micro_ABC2 NHPM 89.0 0.34 7.4E-06 46.8 3.1 24 203-226 478-501 (686)
458 KOG2227 Pre-initiation complex 88.9 0.62 1.3E-05 42.8 4.4 53 177-229 146-200 (529)
459 TIGR00665 DnaB replicative DNA 88.8 0.78 1.7E-05 41.8 5.2 45 182-227 174-218 (434)
460 COG1162 Predicted GTPases [Gen 88.7 0.5 1.1E-05 41.0 3.6 34 188-226 153-186 (301)
461 PRK07940 DNA polymerase III su 88.7 0.36 7.9E-06 43.6 2.9 26 204-229 36-61 (394)
462 PRK14086 dnaA chromosomal repl 88.6 0.73 1.6E-05 44.0 4.9 26 204-229 314-339 (617)
463 TIGR01842 type_I_sec_PrtD type 88.6 0.37 8E-06 45.2 3.0 25 203-227 343-367 (544)
464 COG1135 AbcC ABC-type metal io 88.6 0.4 8.6E-06 41.8 2.9 24 202-225 30-53 (339)
465 cd04178 Nucleostemin_like Nucl 88.6 0.58 1.3E-05 37.2 3.7 24 204-227 117-140 (172)
466 TIGR01193 bacteriocin_ABC ABC- 88.5 0.36 7.9E-06 46.8 3.0 24 204-227 500-523 (708)
467 PRK15494 era GTPase Era; Provi 88.5 0.36 7.8E-06 42.7 2.7 23 204-226 52-74 (339)
468 PHA02542 41 41 helicase; Provi 88.5 0.8 1.7E-05 42.5 5.0 46 183-228 169-214 (473)
469 TIGR01448 recD_rel helicase, p 88.4 0.61 1.3E-05 45.5 4.4 24 205-228 339-362 (720)
470 PTZ00322 6-phosphofructo-2-kin 88.4 0.43 9.4E-06 46.1 3.4 26 203-228 214-239 (664)
471 COG0465 HflB ATP-dependent Zn 88.4 0.41 9E-06 45.3 3.1 50 178-227 147-206 (596)
472 COG4598 HisP ABC-type histidin 88.3 0.42 9.1E-06 38.7 2.7 24 201-224 29-52 (256)
473 COG4916 Uncharacterized protei 88.3 0.41 8.9E-06 40.3 2.7 80 21-103 174-260 (329)
474 TIGR00958 3a01208 Conjugate Tr 88.2 0.43 9.2E-06 46.4 3.2 25 203-227 506-530 (711)
475 TIGR03796 NHPM_micro_ABC1 NHPM 88.0 0.42 9.2E-06 46.3 3.1 24 203-226 504-527 (710)
476 TIGR02768 TraA_Ti Ti-type conj 88.0 0.71 1.5E-05 45.2 4.6 24 205-228 369-392 (744)
477 PRK13764 ATPase; Provisional 88.0 0.52 1.1E-05 44.9 3.5 25 205-229 258-282 (602)
478 KOG2702 Predicted panthothenat 87.9 0.77 1.7E-05 38.6 4.0 34 192-227 109-142 (323)
479 KOG1970 Checkpoint RAD17-RFC c 87.8 0.81 1.8E-05 42.8 4.5 41 188-228 89-134 (634)
480 PRK10522 multidrug transporter 87.8 0.43 9.4E-06 44.8 2.9 24 203-226 348-371 (547)
481 TIGR02203 MsbA_lipidA lipid A 87.8 0.45 9.7E-06 44.8 3.0 25 203-227 357-381 (571)
482 PRK13657 cyclic beta-1,2-gluca 87.8 0.44 9.6E-06 45.1 3.0 25 203-227 360-384 (588)
483 TIGR03453 partition_RepA plasm 87.7 1.1 2.3E-05 40.4 5.2 26 203-228 103-129 (387)
484 TIGR02857 CydD thiol reductant 87.7 0.47 1E-05 44.3 3.0 24 203-226 347-370 (529)
485 PRK11174 cysteine/glutathione 87.6 0.46 9.9E-06 45.0 3.0 24 203-226 375-398 (588)
486 smart00350 MCM minichromosome 87.6 0.9 2E-05 42.5 4.9 49 179-227 201-259 (509)
487 COG1119 ModF ABC-type molybden 87.6 0.48 1.1E-05 39.9 2.7 22 205-226 58-79 (257)
488 COG2074 2-phosphoglycerate kin 87.5 0.57 1.2E-05 39.8 3.1 25 204-228 89-113 (299)
489 TIGR02525 plasmid_TraJ plasmid 87.5 0.63 1.4E-05 41.8 3.6 23 206-228 151-173 (372)
490 TIGR03375 type_I_sec_LssB type 87.5 0.49 1.1E-05 45.8 3.1 23 204-226 491-513 (694)
491 PRK11160 cysteine/glutathione 87.3 0.47 1E-05 44.9 2.8 25 203-227 365-389 (574)
492 TIGR00368 Mg chelatase-related 87.3 0.53 1.2E-05 43.9 3.1 43 180-226 191-233 (499)
493 PHA02519 plasmid partition pro 87.3 1.3 2.7E-05 40.0 5.4 26 203-228 105-131 (387)
494 PRK15115 response regulator Gl 87.2 0.82 1.8E-05 41.6 4.3 46 182-227 135-180 (444)
495 PRK10789 putative multidrug tr 87.2 0.52 1.1E-05 44.6 3.0 25 203-227 340-364 (569)
496 PRK05748 replicative DNA helic 87.1 1.1 2.4E-05 41.1 5.0 46 182-228 182-227 (448)
497 KOG0736 Peroxisome assembly fa 87.1 0.78 1.7E-05 44.6 4.1 49 181-229 672-730 (953)
498 TIGR03029 EpsG chain length de 87.0 1.4 3E-05 37.4 5.4 42 187-228 84-128 (274)
499 COG4962 CpaF Flp pilus assembl 86.8 0.4 8.7E-06 42.3 1.9 25 203-227 172-196 (355)
500 COG2812 DnaX DNA polymerase II 86.8 0.39 8.4E-06 44.8 1.9 49 179-228 14-62 (515)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3e-52 Score=414.77 Aligned_cols=211 Identities=39% Similarity=0.744 Sum_probs=195.9
Q ss_pred CCCcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHHHH
Q 043980 21 NNKKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDELV 100 (233)
Q Consensus 21 ~~~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~ 100 (233)
+.++|||||||+|+|+|++|++||+.+|.++||.+|.|+++++|+.|.+++.+||++|+++|+|||++|++|.||++||+
T Consensus 9 ~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~ 88 (1153)
T PLN03210 9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88 (1153)
T ss_pred CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHH
Confidence 56899999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccceeeceeeeecCCccccCCCchhhhhhHHHHhHHHHHHHHhhhccc-----cccccchh---hHHHhhhh
Q 043980 101 KILECKKEYAQIVIPVLYRVDPSDVRNQTGSFGDSFSKLEEFKEAAELEECFEGSS-----QFVWLSFS---EHQRLLDE 172 (233)
Q Consensus 101 ~~~~~~~~~~~~viPIf~~v~~~~vr~~~g~~~~~f~~~e~~~~~~e~~~~W~~AL-----~~g~~~~~---e~~~~i~~ 172 (233)
+|+++++..++.|+||||+|+|++||+|+|.||++|.+++. ....+++++|++|| +.||++.+ |+ ++|++
T Consensus 89 ~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~-~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~-~~i~~ 166 (1153)
T PLN03210 89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQ-NKTEDEKIQWKQALTDVANILGYHSQNWPNEA-KMIEE 166 (1153)
T ss_pred HHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhc-ccchhHHHHHHHHHHHHhCcCceecCCCCCHH-HHHHH
Confidence 99999988899999999999999999999999999998876 12235799999999 88998864 99 99999
Q ss_pred hccC---------CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhcCCC
Q 043980 173 VFRP---------SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISSDFE 233 (233)
Q Consensus 173 Iv~~---------~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~f~ 233 (233)
||.+ +.+..++||++.+++++..+|..+.+++++||||||||+||||||+++|+++..+|+
T Consensus 167 Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 167 IANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred HHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 9988 345578999999999999999888888999999999999999999999999888774
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=257.06 Aligned_cols=139 Identities=29% Similarity=0.471 Sum_probs=124.8
Q ss_pred CCCcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHHH
Q 043980 21 NNKKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDEL 99 (233)
Q Consensus 21 ~~~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El 99 (233)
..++|||||||+|.|++.+|++||+.+|+++||++|+|+ ++.+|+.+.++|.+||++|+++|+|||++|++|.||++||
T Consensus 23 ~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL 102 (187)
T PLN03194 23 SAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHEL 102 (187)
T ss_pred CCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHH
Confidence 678899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccceeeceeeeecCCccccC-CCchhhhhhHHHHhHHHHHHHHhhhccc-----cccccchh----hHHHh
Q 043980 100 VKILECKKEYAQIVIPVLYRVDPSDVRNQ-TGSFGDSFSKLEEFKEAAELEECFEGSS-----QFVWLSFS----EHQRL 169 (233)
Q Consensus 100 ~~~~~~~~~~~~~viPIf~~v~~~~vr~~-~g~~~~~f~~~e~~~~~~e~~~~W~~AL-----~~g~~~~~----e~~~~ 169 (233)
.+++++. ..|+||||+++|++|++| .+.+ ..+++++|++|| +.|+.+.. |+ ++
T Consensus 103 ~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~------------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~-e~ 165 (187)
T PLN03194 103 ALIMESK----KRVIPIFCDVKPSQLRVVDNGTC------------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWS-EV 165 (187)
T ss_pred HHHHHcC----CEEEEEEecCCHHHhhccccCCC------------CHHHHHHHHHHHHHHhccccccCCCCCCCHH-HH
Confidence 9999864 369999999999999997 4321 235799999999 88986642 88 89
Q ss_pred hhhhccC
Q 043980 170 LDEVFRP 176 (233)
Q Consensus 170 i~~Iv~~ 176 (233)
|++|+..
T Consensus 166 i~~iv~~ 172 (187)
T PLN03194 166 VTMASDA 172 (187)
T ss_pred HHHHHHH
Confidence 9888843
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.88 E-value=3.6e-24 Score=165.88 Aligned_cols=129 Identities=32% Similarity=0.544 Sum_probs=105.5
Q ss_pred EEEcCcccccccchHHHHHHHHhhC--CCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHHHHHHH
Q 043980 27 VFVSFRGEDTRDKFTSHLYSALSRQ--SIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDELVKIL 103 (233)
Q Consensus 27 VFISy~~~D~~~~f~~~L~~~L~~~--gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~ 103 (233)
|||||++.+.+..|+.+|..+|+++ |+++|+++ |+.+|..+.+++.++|++|+++|+|||++|+.|+||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999433566999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred Hhhhcc--cceeeceeeeecCCccc-cCCCchhhhhhHHHH-hHHH--HHHHHhhhcc
Q 043980 104 ECKKEY--AQIVIPVLYRVDPSDVR-NQTGSFGDSFSKLEE-FKEA--AELEECFEGS 155 (233)
Q Consensus 104 ~~~~~~--~~~viPIf~~v~~~~vr-~~~g~~~~~f~~~e~-~~~~--~e~~~~W~~A 155 (233)
++.... ...|+|+|+++.+.+++ .+.+.+...+..+.. .... ......|+.+
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l 138 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKL 138 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHH
Confidence 988554 47899999999999998 577777766655444 2221 3456677654
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.87 E-value=7.3e-22 Score=152.07 Aligned_cols=131 Identities=38% Similarity=0.651 Sum_probs=104.1
Q ss_pred cceEEEcCcc-cccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHHHHHH
Q 043980 24 KYEVFVSFRG-EDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDELVKI 102 (233)
Q Consensus 24 ~~dVFISy~~-~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 102 (233)
+|||||||++ ++....|+.+|...|...|+.+|.|+....|... .+|.++|++|+++|+|+|++|+.|+||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 4455789999999999999999998743333333 3999999999999999999999999999999999
Q ss_pred HHhhhc-ccceeeceeeeecCCccccCCCchhhhhhHHHH-hHHHHHHHHhhhccc
Q 043980 103 LECKKE-YAQIVIPVLYRVDPSDVRNQTGSFGDSFSKLEE-FKEAAELEECFEGSS 156 (233)
Q Consensus 103 ~~~~~~-~~~~viPIf~~v~~~~vr~~~g~~~~~f~~~e~-~~~~~e~~~~W~~AL 156 (233)
...... ...+||||+++..|..+..+.+.+...+..+.. +..+... ..|+.++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~ 134 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKAL 134 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHH
Confidence 887643 667899999998787788888888888776522 3322111 5676543
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.72 E-value=1.3e-18 Score=127.08 Aligned_cols=87 Identities=30% Similarity=0.559 Sum_probs=74.7
Q ss_pred EEEcCcccccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHHHHHHHHhh
Q 043980 27 VFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDELVKILECK 106 (233)
Q Consensus 27 VFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~ 106 (233)
|||||+++| ..++.+|...|+.+|+++|+|.++.+|+.+.+.|.++|++|+..|+++|++|+.|+||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 5699999999999999999999999999999999999999999999999999999999999998843
Q ss_pred hcccceeeceeee
Q 043980 107 KEYAQIVIPVLYR 119 (233)
Q Consensus 107 ~~~~~~viPIf~~ 119 (233)
.+..|+||.++
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 34479999943
No 6
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.89 E-value=5.4e-09 Score=93.38 Aligned_cols=91 Identities=24% Similarity=0.443 Sum_probs=73.2
Q ss_pred CCCcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCC----Cch--
Q 043980 21 NNKKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYT----SSR-- 93 (233)
Q Consensus 21 ~~~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~----~S~-- 93 (233)
..++.||||||++.. .+..++.|.-.|.-+|++||+|- .+..|.. .+.+.+.|..++.+|+|+|||.+ +..
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 457899999999874 56699999999999999999998 8888874 47888999999999999999954 344
Q ss_pred --hhHHHHHHHHHhhhcccceeecee
Q 043980 94 --WCVDELVKILECKKEYAQIVIPVL 117 (233)
Q Consensus 94 --wc~~El~~~~~~~~~~~~~viPIf 117 (233)
|...|+..++++. ..|+|||
T Consensus 687 eDWVHKEl~~Afe~~----KNIiPI~ 708 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQ----KNIIPIF 708 (832)
T ss_pred HHHHHHHHHHHHHhc----CCeeeee
Confidence 5555666665554 4499999
No 7
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.55 E-value=5.3e-08 Score=95.33 Aligned_cols=48 Identities=38% Similarity=0.720 Sum_probs=42.2
Q ss_pred ccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH---HhcCCC
Q 043980 184 AGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK---ISSDFE 233 (233)
Q Consensus 184 ~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~---~~~~f~ 233 (233)
||.+..++++...|..+.. .++||+||||+||||||+.+||+ +..+||
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd 211 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD 211 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCc
Confidence 9999999999998886543 89999999999999999999996 456675
No 8
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.53 E-value=1.7e-07 Score=71.41 Aligned_cols=88 Identities=18% Similarity=0.344 Sum_probs=45.6
Q ss_pred ceEEEcCcccccccchHHHHHHHHhhC-------CCeE----------EEeC-ccCCCcchHHHHHHHHHhcCceEEEee
Q 043980 25 YEVFVSFRGEDTRDKFTSHLYSALSRQ-------SIQT----------FIDD-QLNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 25 ~dVFISy~~~D~~~~f~~~L~~~L~~~-------gi~~----------~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
|.|||||++.|.. ..+..|...+... .+.. +.+. +......+...|.++|..|.++||+++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999843 2667776666653 2221 1122 222344788999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHhhhcccceeecee
Q 043980 87 ESYTSSRWCVDELVKILECKKEYAQIVIPVL 117 (233)
Q Consensus 87 ~~y~~S~wc~~El~~~~~~~~~~~~~viPIf 117 (233)
++-..|.|+..|+..+++. +..|+-|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~~----~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKK----GKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTTT-------EEEEE
T ss_pred CCcccCcHHHHHHHHHHHC----CCCEEEEE
Confidence 9999999999999988763 33455554
No 9
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.99 E-value=1.1e-05 Score=62.67 Aligned_cols=64 Identities=20% Similarity=0.381 Sum_probs=54.2
Q ss_pred eEEEcCccccc-ccchHHHHHHHHhhC-CCeEEEeC-ccCC--CcchHHHHHHHHHhcCceEEEeecCC
Q 043980 26 EVFVSFRGEDT-RDKFTSHLYSALSRQ-SIQTFIDD-QLNR--GDEISQSLVNAIEASAISVIIFSESY 89 (233)
Q Consensus 26 dVFISy~~~D~-~~~f~~~L~~~L~~~-gi~~~~d~-~~~~--G~~~~~~i~~~i~~s~~~i~v~S~~y 89 (233)
-|||||++... ....|..|+..|+.. |+.|.+|. +... +..+...+.+.+++++.+|+|+|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 49999999543 356799999999999 99999998 7743 66788899999999999999999554
No 10
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.59 E-value=9.6e-05 Score=61.23 Aligned_cols=56 Identities=21% Similarity=0.436 Sum_probs=37.7
Q ss_pred CCCCCccccccchHHHHHHHhcc---CCCCeEEEEEEcCCCChHHHHHHHHHHHHhcCC
Q 043980 177 SDNKNQLAGVESRVEEIESLLGV---KSKDVYALGIWGIGGIGKTKIARAIFDKISSDF 232 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~---~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~f 232 (233)
|..-.+++|.+.-+.++.-++.. ..+...-+-+||.+|+||||||..+.+.+..+|
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 45668899999877777655542 223466788999999999999999999866544
No 11
>PTZ00202 tuzin; Provisional
Probab=97.58 E-value=0.00012 Score=66.39 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCCCCccccccchHHHHHHHhccCC-CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKS-KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
|.+...++||+.++..|...|...+ ...+++.|.|++|+|||||++.+...
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~ 309 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK 309 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 5567899999999999999886533 33579999999999999999988764
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.51 E-value=0.00016 Score=64.10 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=41.6
Q ss_pred CCCCccccccchHHHHHHHhcc--CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGV--KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+..++||+.++++|...|.. .......+-|+|++|+|||++++++++++.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999998763 122345688999999999999999998754
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.46 E-value=0.00011 Score=64.44 Aligned_cols=54 Identities=19% Similarity=0.391 Sum_probs=41.7
Q ss_pred CCCCCccccccchHHHHHHHhcc---CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 177 SDNKNQLAGVESRVEEIESLLGV---KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~---~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
|....+++|++..++.+..++.. .......+-++|++|+||||||+.+.+.+..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 44557799999999988877653 1223456779999999999999999997543
No 14
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.39 E-value=0.00018 Score=64.49 Aligned_cols=51 Identities=24% Similarity=0.381 Sum_probs=40.4
Q ss_pred CCCccccccchHHHHHHHhccC--CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVK--SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+..++||+.+++++...+... ......+-|+|.+|+|||++++.+++++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999998887432 22234567999999999999999998764
No 15
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.17 E-value=0.00039 Score=61.58 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=40.2
Q ss_pred ccccccchHHHHHHHhccC----CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 182 QLAGVESRVEEIESLLGVK----SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~~~----~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
+++|+++.++++.+++... ....+++.+.|.+|.||||||+++.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999998876531 23468999999999999999999988754
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.05 E-value=0.00054 Score=62.15 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=35.7
Q ss_pred CCccccccchHHH---HHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 180 KNQLAGVESRVEE---IESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 180 ~~~~~g~~~~~~~---l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
...++|.+.-+.. +..++... ....+-++|.+|+||||||+.+++.....
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~ 63 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAP 63 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3557777765444 66666433 34567789999999999999999875443
No 17
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.92 E-value=0.00082 Score=59.89 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=38.7
Q ss_pred CCccccccchHHHHHHHhccC-----------CCCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 180 KNQLAGVESRVEEIESLLGVK-----------SKDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
..++.|++..++++.+.+... -...+-+-++|.+|+|||+||+++++.....
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 356889998888887765321 1123458899999999999999999876543
No 18
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.91 E-value=0.0033 Score=47.51 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=50.8
Q ss_pred eEEEcCcccccccchHHHHHHHHhhCCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecC
Q 043980 26 EVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSES 88 (233)
Q Consensus 26 dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~ 88 (233)
.|||.|+ .| ..++..+...|+..|+.+.+-. ....|..+.+.+.+.+.+++..|+++||+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899999 44 3578899999998888876655 66889999999999999999999999985
No 19
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.85 E-value=0.0013 Score=59.27 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=39.0
Q ss_pred CCccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 180 KNQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
..++.|++..++++.+.+.. +-...+-|-++|.+|+|||++|++++++....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 35688999999988875532 11224567889999999999999999875443
No 20
>PRK04195 replication factor C large subunit; Provisional
Probab=96.84 E-value=0.001 Score=61.58 Aligned_cols=52 Identities=25% Similarity=0.370 Sum_probs=41.2
Q ss_pred CCCCCccccccchHHHHHHHhccC--CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVK--SKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~--~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
|....+++|.+..++.+..|+..- ....+.+-|+|.+|+||||+|+++.+.+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 334466899999999998887532 1226788899999999999999999875
No 21
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0013 Score=58.68 Aligned_cols=49 Identities=24% Similarity=0.449 Sum_probs=33.6
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhcCC
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISSDF 232 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~f 232 (233)
...+++|-...+..+.+ .+.+...-+||.+|+||||||+.+.......|
T Consensus 28 GQ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f 76 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKTTLARLIAGTTNAAF 76 (436)
T ss_pred ChHhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHHHHHHHHHHhhCCce
Confidence 33445555544444433 23466677999999999999999998766555
No 22
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.73 E-value=0.0016 Score=43.80 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+|+|.|..|.||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 23
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.65 E-value=0.0027 Score=55.43 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=38.1
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
....++|++..++.+..++..+. ...+-++|..|+||||+|+++.+.+.
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567899988888888776432 33466999999999999999988753
No 24
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.65 E-value=0.0027 Score=55.21 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=40.6
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|....+++|.+...+.+..++..+. -..++-++|.+|+||||+|+++++.+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3344678899988888888876432 246777799999999999999998753
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.63 E-value=0.0019 Score=54.63 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..++.|+|.+|+|||||++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45788999999999999999998754
No 26
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.62 E-value=0.0027 Score=62.49 Aligned_cols=47 Identities=28% Similarity=0.456 Sum_probs=38.6
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..++||+.+++.+.++|.... .+-+-++|.+|+|||++|+.+..++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999887543 22345899999999999999988764
No 27
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0029 Score=60.12 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=42.9
Q ss_pred CCCccccccchHHHHHHHhcc----CCCCeEEEEEEcCCCChHHHHHHHHHHHHhcCC
Q 043980 179 NKNQLAGVESRVEEIESLLGV----KSKDVYALGIWGIGGIGKTKIARAIFDKISSDF 232 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~----~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~f 232 (233)
...+..|.+.-++.+.++|.- ..-...+++++|.+|+|||.|++.+++.+...|
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf 378 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF 378 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence 346788999888888887643 223358999999999999999999999876554
No 28
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.52 E-value=0.0048 Score=51.32 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
....++||.|..|.|||||++.+.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999887654
No 29
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.52 E-value=0.0023 Score=61.95 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=35.2
Q ss_pred CCccccccchHH---HHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhcCC
Q 043980 180 KNQLAGVESRVE---EIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISSDF 232 (233)
Q Consensus 180 ~~~~~g~~~~~~---~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~f 232 (233)
-..++|.+.-+. .+..++..+ ....+-++|.+|+||||||+.+++.....|
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 345677765553 344445432 345567899999999999999998765443
No 30
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.51 E-value=0.0035 Score=58.80 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=39.9
Q ss_pred CccccccchHHHHHHHh----ccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLL----GVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l----~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.++.|+++.++.+.+.| .......+++.++|.+|+||||||+.+.+-+.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 36889999999998876 22334568999999999999999999988643
No 31
>PLN03025 replication factor C subunit; Provisional
Probab=96.49 E-value=0.0039 Score=54.53 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=36.8
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.+++|.+.-++.|..++..+. ..-+-++|.+|+||||+|+++.+.+
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHH
Confidence 344567888877777877766433 2235589999999999999998875
No 32
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.0036 Score=53.61 Aligned_cols=55 Identities=18% Similarity=0.383 Sum_probs=39.4
Q ss_pred CCCCCccccccchHHHHHHHhccC---CCCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVK---SKDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~---~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
|..-.+++|.+.-++++.-.+... ....-=+-++|.+|.||||||.-+.+.+..+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 344577899887777776555431 1224446689999999999999999986554
No 33
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.42 E-value=0.0044 Score=61.20 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=39.6
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-..++||+..++.+.+.|.... ..-+-++|.+|+||||||+.+.+++.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHh
Confidence 344678999999999988776543 23445899999999999999998863
No 34
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.42 E-value=0.0048 Score=53.38 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=38.4
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|++..++.+..++..+. ...+-++|..|+||||+|+.+.+.+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899988888888876433 3346899999999999999999875
No 35
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.40 E-value=0.0028 Score=56.82 Aligned_cols=30 Identities=23% Similarity=0.069 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc-CCC
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKISS-DFE 233 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~~-~f~ 233 (233)
.+-.+|+|.+|+|||||+++||+.+.. +||
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFD 199 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPE 199 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCC
Confidence 456789999999999999999998754 353
No 36
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.37 E-value=0.0053 Score=50.49 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=29.8
Q ss_pred cchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 187 ESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+.-++.+.+++.. .....+-|+|..|+|||+||++++++.
T Consensus 23 ~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 23 AELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666665432 335678899999999999999998864
No 37
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.0062 Score=54.32 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=40.1
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|..-.+++|.+.-++.+...+..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3345678899988888887776432 245677999999999999999998763
No 38
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.29 E-value=0.0049 Score=56.31 Aligned_cols=51 Identities=25% Similarity=0.453 Sum_probs=38.2
Q ss_pred CccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 181 NQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
.++.|.+..++++.+.+.. +-...+-+-++|.+|.|||+||+++++.....
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 5678888888888776532 11234567799999999999999999976543
No 39
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.27 E-value=0.006 Score=60.33 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=38.4
Q ss_pred CCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-..++||+..++.+.+.|.... ..-+-++|.+|+||||||+.+..++
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999887543 2344588999999999999998876
No 40
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.27 E-value=0.0062 Score=46.55 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=28.3
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 189 RVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+..++.+.|...-....+|.+.|.-|.||||+++.+.+.+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444443322334589999999999999999998864
No 41
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.25 E-value=0.0055 Score=59.63 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=38.7
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-..++||+..++.+.+.|.... ..-+-++|.+|+|||++|+.+.+++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHH
Confidence 33578999999999998776543 2334589999999999999999876
No 42
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0057 Score=58.24 Aligned_cols=53 Identities=30% Similarity=0.392 Sum_probs=42.5
Q ss_pred CCccccccchHHHHHHHhcc----CCCCeEEEEEEcCCCChHHHHHHHHHHHHhcCC
Q 043980 180 KNQLAGVESRVEEIESLLGV----KSKDVYALGIWGIGGIGKTKIARAIFDKISSDF 232 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~----~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~f 232 (233)
..+..|+++-++.+.+++.- ++.+..+++.+|.+|+|||.+|+.|+..+...|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 35778998888888887642 344578999999999999999999999765544
No 43
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.16 E-value=0.006 Score=55.67 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=33.8
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+++.+..++.+...|.. ..-+-++|++|+|||++|+++++.+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456667777777776653 23566799999999999999988753
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=96.15 E-value=0.0094 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+.+-+||.+|+|||+|++++.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999874
No 45
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.15 E-value=0.0077 Score=59.07 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=40.8
Q ss_pred CCCccccccchHHHHHHHhcc---CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGV---KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~---~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+..+.||+.++++|...|.. +.....++=|+|.+|.|||+.++.|.+++.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999887653 222235677999999999999999988764
No 46
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.13 E-value=0.0068 Score=57.82 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=38.8
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+...+.++|.+..+..+.+.+.. .....+.|+|.+|+||||||+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34557789999888887765532 234568999999999999999998754
No 47
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.13 E-value=0.0064 Score=53.91 Aligned_cols=44 Identities=25% Similarity=0.499 Sum_probs=31.5
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...+++|...-++.+.+ .+.+..+-+||.+|+||||||+.+...
T Consensus 142 GQ~hlv~q~gllrs~ie-----q~~ipSmIlWGppG~GKTtlArlia~t 185 (554)
T KOG2028|consen 142 GQSHLVGQDGLLRSLIE-----QNRIPSMILWGPPGTGKTTLARLIAST 185 (554)
T ss_pred chhhhcCcchHHHHHHH-----cCCCCceEEecCCCCchHHHHHHHHhh
Confidence 44556665544444332 345788999999999999999998774
No 48
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.12 E-value=0.0086 Score=56.62 Aligned_cols=52 Identities=27% Similarity=0.213 Sum_probs=40.3
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|..-..++|.+.-++.+...+..+. -.+.+-++|..|+||||+|+.+.+.+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445678899988888888775432 236677999999999999999988764
No 49
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.10 E-value=0.0085 Score=59.30 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=38.2
Q ss_pred CCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-..++||+..++.+.+.|.... ..-+-++|.+|+|||+||+.+..++
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3569999999999999887543 2334479999999999999998876
No 50
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.09 E-value=0.011 Score=48.97 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+.+-|+|..|+|||+||+++++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999864
No 51
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.05 E-value=0.0079 Score=58.14 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=39.5
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
....+++|.+.-++.|..++..+.- ...+-++|..|+||||+|+.+.+.+.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL-~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRL-HHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCC-CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3446688999888888888875543 34445999999999999999888753
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.0093 Score=55.09 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.+++|.+.-.+.|...+..+. -...+-++|.+|+||||+|+.+.+.+
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344668898877677766665332 13557799999999999999998865
No 53
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.00 E-value=0.008 Score=54.31 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=38.2
Q ss_pred CCCccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.-.++.|.+..++++.+.+.. +-...+-+-++|.+|.|||+||+++.+....
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~ 205 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA 205 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 336788988888888765431 1123467889999999999999999987543
No 54
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.0094 Score=54.90 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=38.9
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-.+++|.+.-+..|..++..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344667898888888887776443 134577999999999999999988753
No 55
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.94 E-value=0.0077 Score=57.43 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=41.7
Q ss_pred CCCCCccccccchHHHHHHHhccCC---CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKS---KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~---~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
|.....++|.+..+++|..++.... ...+++.|+|..|.||||+++.+...+
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5556778898888888888876432 345789999999999999999988764
No 56
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.012 Score=53.15 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=39.5
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|..-..++|.+.-++.|..++..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344678898888888877776442 234577899999999999999998764
No 57
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.012 Score=55.33 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=39.1
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-.+++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344668899988888888776432 235567899999999999999998654
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.011 Score=55.13 Aligned_cols=50 Identities=26% Similarity=0.192 Sum_probs=38.7
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-.+++|.+.-++.|..++..+. -...+-++|.+|+||||+|+.+.+.+.
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34567898887777877776433 245678999999999999999998764
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.011 Score=56.28 Aligned_cols=51 Identities=29% Similarity=0.298 Sum_probs=40.2
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-..++|.+.-.+.|..++..+.- ...+-++|..|+||||+|+.+.+.+.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl-~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRL-HHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3446789999888888888774432 46777999999999999999988753
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.82 E-value=0.014 Score=56.84 Aligned_cols=46 Identities=30% Similarity=0.370 Sum_probs=37.3
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++||+..++.+.+.|..... .-+-++|.+|+|||+||+.+++++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999998876432 222479999999999999998864
No 61
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.79 E-value=0.013 Score=55.24 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=26.7
Q ss_pred HhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 196 LLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 196 ~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
++....+++.+|||.|..|.||||||+.+...+
T Consensus 57 lL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 57 LLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 343344568999999999999999999998753
No 62
>PRK05439 pantothenate kinase; Provisional
Probab=95.76 E-value=0.02 Score=50.02 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...-+|||.|.+|+||||+|+.+...+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999998877543
No 63
>CHL00181 cbbX CbbX; Provisional
Probab=95.72 E-value=0.017 Score=49.95 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-+-++|.+|+||||+|+.+++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999997753
No 64
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.72 E-value=0.011 Score=57.59 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=36.6
Q ss_pred CccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
+++.|.+..++++.+++.. +-...+-+-++|.+|+||||||+++.+...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 4577888888888776532 112245678999999999999999998753
No 65
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.69 E-value=0.019 Score=50.56 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=27.8
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 192 EIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 192 ~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+.+.+.....+..+|+|.|.+|.|||||+..+...+.
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34443333334578999999999999999998776543
No 66
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.69 E-value=0.013 Score=49.23 Aligned_cols=53 Identities=19% Similarity=0.391 Sum_probs=38.3
Q ss_pred CCCCCccccccchHHHHHHHhcc--CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGV--KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~--~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
+.....++|.+.+++.|.+-... ......-+=+||..|.|||+|++++.+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 44567899999999888663221 112244455799999999999999988754
No 67
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.68 E-value=0.022 Score=48.78 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+++.++|.+|+||||++..+...+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999887654
No 68
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.63 E-value=0.011 Score=50.21 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-+-++|.+|+||||+|+.+++.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999998764
No 69
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.60 E-value=0.012 Score=52.60 Aligned_cols=30 Identities=37% Similarity=0.618 Sum_probs=26.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
.-.+.++|||.+|.|||.+|+++++.+...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 347899999999999999999999986543
No 70
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.57 E-value=0.017 Score=56.59 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=37.1
Q ss_pred CccccccchHHHHHHHhcc----CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 181 NQLAGVESRVEEIESLLGV----KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~----~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.+++|.+.-++.+.+++.. .......+.++|.+|+|||++|+++.+.+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4577888777777765432 1223457889999999999999999987643
No 71
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.56 E-value=0.016 Score=50.06 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+...+|||.|..|.||||+|+.+-..+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999998765543
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.017 Score=56.85 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.....++|.+.-++.|..++..+. -...+-++|..|+||||+|+.+.+.+.+
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 344668899888888887776432 1345678999999999999999987643
No 73
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.53 E-value=0.016 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-+-++|.+|+||||+|+.+.+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999998877654
No 74
>PLN02348 phosphoribulokinase
Probab=95.48 E-value=0.025 Score=50.80 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=25.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
+...+|||.|-+|.||||+|+.+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999998764
No 75
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.46 E-value=0.016 Score=54.00 Aligned_cols=49 Identities=27% Similarity=0.491 Sum_probs=35.9
Q ss_pred CccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.++.|.+..++++.+.+.. +-...+-+-++|.+|.|||++|+++++.+.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 5577788888777665321 112245578899999999999999999764
No 76
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.46 E-value=0.027 Score=48.86 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=26.9
Q ss_pred HHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 193 IESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 193 l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+.+-+........+|+|.|.+|.|||||+..+...+
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 333333334457899999999999999999977653
No 77
>PRK09087 hypothetical protein; Validated
Probab=95.45 E-value=0.021 Score=47.61 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+.+.|||..|+|||+|+++..+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 466899999999999999988765
No 78
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.015 Score=51.30 Aligned_cols=52 Identities=19% Similarity=0.422 Sum_probs=37.2
Q ss_pred CCccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 180 KNQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
...+-|.+++++++.+-+.. +-+...=|-+||.+|.|||-||++|+++....
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At 212 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT 212 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce
Confidence 35677888888888764321 11234556789999999999999999974433
No 79
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.027 Score=50.31 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=39.2
Q ss_pred CCCccccccchHHHHHHHhccC--CCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEIESLLGVK--SKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.+..+.+|+.+++++...|..- .....-+-|+|..|+|||+.++.+.+++..
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~ 68 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEE 68 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHh
Confidence 3455999999999998765431 111222888999999999999999998754
No 80
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.02 Score=53.41 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=39.7
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-.+++|.+.-++.|..++..+.- ...+-++|..|+||||+|+.+.+.+-
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l-~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYL-HHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCC-CeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3446789999888888888865432 34567899999999999999988653
No 81
>PLN02200 adenylate kinase family protein
Probab=95.39 E-value=0.017 Score=48.37 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+|.|.|++|.||||+|+.+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999988753
No 82
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.014 Score=48.84 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=23.4
Q ss_pred ccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 198 GVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 198 ~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
......-.++||+|..|.|||||++.+..
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 33334467899999999999999998765
No 83
>PRK14974 cell division protein FtsY; Provisional
Probab=95.36 E-value=0.032 Score=49.33 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...++.++|++|+||||++..+...+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 368999999999999998888876543
No 84
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.36 E-value=0.031 Score=49.26 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=39.4
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-.+++|.+..++.+..++..+. -...+=++|..|+||||+|+.+...+.
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44678899998999888776432 235677899999999999999988753
No 85
>PLN02796 D-glycerate 3-kinase
Probab=95.35 E-value=0.016 Score=51.15 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-+|||.|..|.|||||++.+...+.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 467899999999999999999887653
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.35 E-value=0.02 Score=54.94 Aligned_cols=51 Identities=27% Similarity=0.324 Sum_probs=40.0
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
|....+++|.+.-++.|..++..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3345678999988888888877542 24567899999999999999998864
No 87
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.34 E-value=0.016 Score=52.26 Aligned_cols=28 Identities=21% Similarity=0.055 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
-+.++|+|.+|.|||||++.+++.+..+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 4678999999999999999999986554
No 88
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.33 E-value=0.015 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-++.|+|.|..|.|||||++++.+..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988764
No 89
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.016 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-|+|-+.|.+|.|||+|++++++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 3788899999999999999999974
No 90
>CHL00176 ftsH cell division protein; Validated
Probab=95.27 E-value=0.015 Score=55.73 Aligned_cols=51 Identities=29% Similarity=0.369 Sum_probs=35.4
Q ss_pred CCCccccccchHHHHHHHhcc---C-------CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGV---K-------SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~---~-------~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-.++.|.++.++++.+++.. . ..-.+-+-++|.+|+|||+||+++.+...
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678887777666655321 1 11134578899999999999999988643
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.26 E-value=0.023 Score=54.22 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=39.4
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+++|.+.-++.|...+..+.- ...+-++|..|+||||+|+.+.+.+.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRL-pHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRL-HHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCC-ceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 446688999888888888765432 35667899999999999999988764
No 92
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.25 E-value=0.022 Score=52.95 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=32.8
Q ss_pred CccccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGV----------KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+++|.+..++++.+++.. +....+-+-++|.+|+|||+||+++.+...
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567777666555543321 112234477899999999999999988643
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.033 Score=49.51 Aligned_cols=53 Identities=25% Similarity=0.188 Sum_probs=41.8
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
|.....++|.+.-.+.+...+..+. -...+-+.|..|+||||+|..+.+.+-+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4566789999988888888776443 2446778999999999999999887643
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.028 Score=53.56 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=38.7
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.+++|.+.-++.|..++..+. -...+=++|..|+||||+|+.+.+.+
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344668898887888888776543 24566799999999999999997765
No 95
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.22 E-value=0.023 Score=55.72 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=39.8
Q ss_pred CCccccccchHHHHHHHhcc----CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 180 KNQLAGVESRVEEIESLLGV----KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~----~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
..+..|.+.-++.+.++|.. ......++.++|.+|+||||+|+.+...+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~ 375 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR 375 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45688999888888877653 1234568999999999999999999886543
No 96
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.21 E-value=0.026 Score=52.54 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=38.2
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-.+++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+++.+-
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 344667898887777776555332 235677899999999999999998753
No 97
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.028 Score=52.14 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=37.9
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.+++|.+.-++.|...+..+.- ...+-++|..|+||||+|+.+...+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri-~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKI-PQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCC-CceEEEECCCCccHHHHHHHHHHHH
Confidence 3446789988877777776654332 3467799999999999999988754
No 98
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.19 E-value=0.042 Score=51.95 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=33.2
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
+...-+.+-.+.|.++.......-.+|.|.|+.|.||||+|+++..++.
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 3334444434444444444444456889999999999999999998765
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.18 E-value=0.021 Score=47.81 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+.+-|+|..|+|||+|++++++...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999988643
No 100
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.034 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+.++|+++|.+|+||||++..+...+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999987654
No 101
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.16 E-value=0.029 Score=53.68 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=39.6
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|....+++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3445678899888888888776443 234567899999999999999988753
No 102
>PRK08727 hypothetical protein; Validated
Probab=95.16 E-value=0.043 Score=45.85 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+.|+|..|+|||+|++++.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999998764
No 103
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.03 Score=53.43 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=39.3
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|..-..++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345678898887888877776432 234577999999999999999988764
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.029 Score=52.57 Aligned_cols=50 Identities=26% Similarity=0.336 Sum_probs=38.5
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+++|.+.-++.+..++..+.- ...+-++|..|+||||+|+.+...+.
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~-~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRL-HHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCC-CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 446688998888888887764332 34566899999999999999988753
No 105
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.10 E-value=0.034 Score=43.86 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=28.7
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..+++|.++|. + +++.++|..|+|||||...+...
T Consensus 24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 44777777776 3 68899999999999999998764
No 106
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.09 E-value=0.035 Score=47.96 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=29.4
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 191 EEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.++...+........+|||.|.||.||+||.-++-..+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 44555555555567899999999999999999877654
No 107
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.07 E-value=0.018 Score=50.21 Aligned_cols=27 Identities=19% Similarity=0.477 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-..|.+.||.|.||||+++.+.+++.
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988754
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.038 Score=49.16 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=40.3
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|..-.+++|.+...+.+...+..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3345678899988888888776432 235677899999999999999988764
No 109
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.06 E-value=0.034 Score=50.50 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=36.1
Q ss_pred CCccccccchHHHHHHHhcc---------CC---CCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 180 KNQLAGVESRVEEIESLLGV---------KS---KDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~---------~~---~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
...++|.+..++.+...+.. .. ....-+-++|.+|+||||||+.+...+..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34578888888877665532 00 01245789999999999999999887543
No 110
>PRK12289 GTPase RsgA; Reviewed
Probab=95.06 E-value=0.13 Score=45.71 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=24.8
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+++|.+.|.. .++.|.|++|+|||||..++..+
T Consensus 163 I~eL~~~L~~-----ki~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 163 LEALLEQLRN-----KITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred HHHHhhhhcc-----ceEEEEeCCCCCHHHHHHHHcCc
Confidence 5556555541 35889999999999999998753
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.02 E-value=0.032 Score=53.00 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=40.7
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|....+++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 3445678999988888888776443 244677899999999999999998764
No 112
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.00 E-value=0.033 Score=51.38 Aligned_cols=45 Identities=18% Similarity=0.036 Sum_probs=34.5
Q ss_pred CCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...++|+++-++.+...+..+ .-+-|.|.+|+|||+||+.+....
T Consensus 19 ~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHh
Confidence 456899998888777655432 235578999999999999998854
No 113
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.99 E-value=0.032 Score=48.89 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+++++|.+|+||||++..+...+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999877643
No 114
>PRK06620 hypothetical protein; Validated
Probab=94.98 E-value=0.022 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.292 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+.+-|||..|+|||+|++++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 66889999999999999997765
No 115
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.93 E-value=0.012 Score=44.85 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=28.6
Q ss_pred ccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 184 AGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 184 ~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
||.-..++++.+-+..-...-.-|-|.|..|.||+++|+.+++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 35555566665544432223345678999999999999998874
No 116
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.89 E-value=0.027 Score=41.33 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~ 225 (233)
....++|.|..|.|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35789999999999999999864
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.86 E-value=0.04 Score=52.24 Aligned_cols=50 Identities=26% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-.+++|.+.-++.|..++..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34668898888888888776442 234567999999999999999988754
No 118
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.84 E-value=0.043 Score=48.91 Aligned_cols=53 Identities=28% Similarity=0.270 Sum_probs=36.5
Q ss_pred CCCccccccchHHHH---HHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 179 NKNQLAGVESRVEEI---ESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l---~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
....+||+....+.. .+++..+.=.-+.+-+.|.+|.|||+||.++.+.+.+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 456899998777765 44555443335778899999999999999999987643
No 119
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.83 E-value=0.045 Score=49.71 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.-+-++|.+|+|||+||+.+...+..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 45778999999999999999886543
No 120
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.83 E-value=0.031 Score=48.10 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++++++|.+|+||||++..+...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999887654
No 121
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.80 E-value=0.036 Score=54.04 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=35.3
Q ss_pred CccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 181 NQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.++.|.+.-++.|.+.+.. +....+-+-++|.+|.|||+||+++.+....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~ 513 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA 513 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4567877777777665432 1112345778999999999999999987543
No 122
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.04 Score=53.45 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=37.5
Q ss_pred CCccccccchHHHHHHHhccCC-CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 180 KNQLAGVESRVEEIESLLGVKS-KDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
-..++||+.+++.+.+.|.... |+.. ++|.+|+|||+++.-++.+|.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv---LiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV---LVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe---EecCCCCCHHHHHHHHHHHHh
Confidence 3668999999999999887643 3333 458999999999999988853
No 123
>PRK12377 putative replication protein; Provisional
Probab=94.77 E-value=0.033 Score=47.12 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+-++|..|+|||+||.++.+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999754
No 124
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.77 E-value=0.037 Score=47.82 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=25.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.++.+++|.|.+|.|||||...+.+.+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999887643
No 125
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.74 E-value=0.059 Score=49.33 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+|.++|.+|+||||+|..+...+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999887654
No 126
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.73 E-value=0.041 Score=49.92 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=34.4
Q ss_pred CccccccchHHHHHHHhccC------------CCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 181 NQLAGVESRVEEIESLLGVK------------SKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~------------~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
..++|.+..++.+.-.+... ....+-|-++|.+|+|||+||+++...+..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44788887777765433321 111245778999999999999999887544
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.047 Score=51.85 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=39.3
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-.+++|.+.-++.|..++..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344678899888888877776443 235567899999999999999988753
No 128
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.69 E-value=0.05 Score=45.90 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+-++|-+|+|||+||.++.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999875
No 129
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.68 E-value=0.026 Score=47.99 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....++||+|..|.|||||++.+..-
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L 62 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGL 62 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcC
Confidence 34678999999999999999998753
No 130
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.68 E-value=0.036 Score=51.81 Aligned_cols=48 Identities=29% Similarity=0.353 Sum_probs=36.3
Q ss_pred CccccccchHHHHHHHhcc---CCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGV---KSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~---~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+++-...-++++..||.. +....+++-+.|.+|.||||.++.+.+.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3344445567888888864 22336799999999999999999999875
No 131
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.67 E-value=0.23 Score=42.50 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.++++|++|+|||||...+.+
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAG 140 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 35689999999999999998865
No 132
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.63 E-value=0.065 Score=47.50 Aligned_cols=52 Identities=23% Similarity=0.223 Sum_probs=40.7
Q ss_pred CCCccccccchHHHH---HHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEI---ESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l---~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
....+||.....+.. .+++..+.-.-+-|-+.|.+|.|||+||-.+.+.+.+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 456789988766653 5566665555788889999999999999999988754
No 133
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=94.62 E-value=0.05 Score=48.60 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
..++|+|+|..|.|||||+..+...++.
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~ 231 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIA 231 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999987654
No 134
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.62 E-value=0.056 Score=51.04 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=40.0
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|..-..++|.+.-++.|...+..+.- ...+=++|..|+||||+|+.+...+.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~-~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKI-SHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33456789999888888888775432 34555899999999999999987653
No 135
>PLN02165 adenylate isopentenyltransferase
Probab=94.61 E-value=0.032 Score=49.07 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+++|+|+.|+||||||..+...+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 45899999999999999999988743
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.53 E-value=0.056 Score=48.82 Aligned_cols=26 Identities=38% Similarity=0.443 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+-|+|..|+|||+|++++++.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~ 161 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL 161 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 45678999999999999999999764
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.50 E-value=0.056 Score=50.18 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=39.2
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-..++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+...+.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344678899988888888876543 235566899999999999999888653
No 138
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.48 E-value=0.074 Score=47.56 Aligned_cols=52 Identities=19% Similarity=0.102 Sum_probs=40.8
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|....+++|.+.-++.|.+.+..+. -...+-++|..|+||+|+|..+.+.+-
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 5566789999988888888776543 234677899999999999999988753
No 139
>PRK05642 DNA replication initiation factor; Validated
Probab=94.46 E-value=0.041 Score=45.97 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+.+-|||..|+|||.|++++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3678899999999999999998764
No 140
>PRK09183 transposase/IS protein; Provisional
Probab=94.46 E-value=0.035 Score=47.18 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...+.|+|.+|+|||+||.++.+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 345779999999999999998765
No 141
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.46 E-value=0.059 Score=41.86 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...++++|++|+||+||..++..+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC
Confidence 456789999999999999998763
No 142
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.45 E-value=0.069 Score=44.22 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
....+-|+|..|.|||.|.+++++.+.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~ 59 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQ 59 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999754
No 143
>PLN02199 shikimate kinase
Probab=94.44 E-value=0.05 Score=47.11 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
-+.|.++||.|.||||+++.+.+.+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg 127 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLG 127 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999988654
No 144
>PRK08116 hypothetical protein; Validated
Probab=94.43 E-value=0.039 Score=47.15 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=21.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-+-++|..|+|||.||.++++.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999754
No 145
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.43 E-value=0.041 Score=49.95 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-+|||.|..|.|||||++.+...+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999986544
No 146
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.41 E-value=0.067 Score=47.94 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=30.6
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++.++|..+-....++-|.|.+|+|||||+..+...+
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455666666555556799999999999999999987654
No 147
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.38 E-value=0.63 Score=42.16 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.--++|+|.+|+|||||..++..
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~ 194 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLG 194 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 35688999999999999998865
No 148
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.37 E-value=0.055 Score=45.38 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=33.0
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.++||-++-++.|.-.-. ..+..-+-|.||+|+||||-+..+.+.+
T Consensus 27 ~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 456787776666654333 2235566789999999999998888864
No 149
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.37 E-value=0.096 Score=46.03 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=30.9
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
+..+-..+....+...+..+ +-|-|.|.+|+||||+|+.+...+.
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHC
Confidence 33444444455566555432 3478899999999999999988754
No 150
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.36 E-value=0.044 Score=47.60 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-+|.|.|..|+||||+|..+.+++.
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~ 117 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLG 117 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788999999999999999998753
No 151
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.35 E-value=0.074 Score=48.93 Aligned_cols=52 Identities=23% Similarity=0.331 Sum_probs=39.9
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|..-.+++|.+.-++.+...+..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3345678899988888888776432 135667899999999999999988753
No 152
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.33 E-value=0.039 Score=45.57 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||++.+...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999998764
No 153
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.31 E-value=0.06 Score=40.57 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+|.+.|-=|.||||+++.+.+.+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999998864
No 154
>PRK06526 transposase; Provisional
Probab=94.28 E-value=0.043 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-+-++|.+|+|||+||.++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 345789999999999999998775
No 155
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.27 E-value=0.036 Score=53.07 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-++.-++|.+|+||||||+-++++
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHh
Confidence 4688999999999999999998876
No 156
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.27 E-value=0.073 Score=51.89 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=37.4
Q ss_pred CCccccccchHHHHHHHhccC------CC-CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 180 KNQLAGVESRVEEIESLLGVK------SK-DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~------~~-~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...++|.+..++.+...+... .+ ....+-++|..|+|||+||+.+.+.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 467889988888887765431 11 234577899999999999999988753
No 157
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.25 E-value=0.06 Score=49.08 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+|.++|.+|+||||++..+...+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999887654
No 158
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.057 Score=53.17 Aligned_cols=50 Identities=24% Similarity=0.221 Sum_probs=39.0
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-.+++|.+.-++.|...+..+.- ...+-++|..|+||||+|+.+.+.+.
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri-~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRI-NHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCC-CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688988888888887764432 34567899999999999999988764
No 159
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.23 E-value=0.065 Score=50.63 Aligned_cols=52 Identities=27% Similarity=0.278 Sum_probs=40.5
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|..-..++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+.+.+-
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3344678899988888888876432 245677999999999999999988753
No 160
>PRK10536 hypothetical protein; Provisional
Probab=94.19 E-value=0.078 Score=45.05 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=30.8
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..+.++......+..++.. ..++.+.|..|.|||+||.++.-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3345555555556555542 348899999999999999997764
No 161
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.19 E-value=0.074 Score=48.79 Aligned_cols=27 Identities=37% Similarity=0.389 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.+-+-|+|..|+|||+|++++.+.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 466889999999999999999997643
No 162
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.18 E-value=0.048 Score=46.74 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=25.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhcCC
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKISSDF 232 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~~~f 232 (233)
-+-++|.|-.|.|||||++.++++++.+|
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~ 97 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAH 97 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcC
Confidence 46789999999999999999999987655
No 163
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.044 Score=45.44 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988764
No 164
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.17 E-value=0.044 Score=45.50 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 165
>COG4240 Predicted kinase [General function prediction only]
Probab=94.16 E-value=0.051 Score=45.36 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.--++||+|..|.||||++..+++.+..
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~ 76 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAA 76 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHH
Confidence 4679999999999999999999987543
No 166
>PHA02244 ATPase-like protein
Probab=94.15 E-value=0.052 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhc
Q 043980 207 LGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 207 i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
|-|+|..|+|||+||+++++....
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 556899999999999999987543
No 167
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.14 E-value=0.055 Score=51.60 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=35.1
Q ss_pred CCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 180 KNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
..+++|.++-++.+...+.... -+-++|++|+||||+|+++.+.+..
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3567888877777766665432 3448999999999999999887643
No 168
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.14 E-value=0.063 Score=52.45 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=37.8
Q ss_pred CCccccccchHHHHHHHhccC-------CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 180 KNQLAGVESRVEEIESLLGVK-------SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~-------~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...++|.+..++.|...+... ......+-++|..|+|||+||+.+...+.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899998888887765521 11245678899999999999999988754
No 169
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.13 E-value=0.087 Score=48.50 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.0
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-...|.++|..+-..-.++-|.|.+|+|||||+..+...+
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~ 118 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL 118 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34566777776655567889999999999999999986653
No 170
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.12 E-value=0.06 Score=50.53 Aligned_cols=47 Identities=23% Similarity=0.411 Sum_probs=35.3
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.+..++.+...+.... ..-+-|+|.+|+|||++|+.+++.
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 34568999888888877654322 234568999999999999999864
No 171
>PRK03003 GTP-binding protein Der; Reviewed
Probab=94.11 E-value=0.65 Score=42.94 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+...|+|+|-+++|||||..++.+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~ 234 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGE 234 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999999999999998753
No 172
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.10 E-value=0.041 Score=49.93 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+-+.|.+|+|||+||+.+...+.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcC
Confidence 4678899999999999999987654
No 173
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.09 E-value=0.047 Score=44.82 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998753
No 174
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.08 E-value=0.087 Score=48.08 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+++.++|.+|+||||++..+...+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988876653
No 175
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.02 E-value=0.052 Score=46.23 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=36.5
Q ss_pred CCccccccchHHHHH---HHhcc----CCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIE---SLLGV----KSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~---~~l~~----~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-.+++|.++.+++.. +.|.. +.+..+-|-.+|.+|.|||.+|+++.+..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 367899987776543 33432 33456778899999999999999998863
No 176
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.00 E-value=0.043 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.++||+|..|.||||||+.+..
T Consensus 317 GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999865
No 177
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.00 E-value=0.05 Score=44.97 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34679999999999999999998764
No 178
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.96 E-value=0.05 Score=44.83 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988753
No 179
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.96 E-value=0.053 Score=50.85 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=37.9
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....++|....++++.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4467899998888888866543222334569999999999999999985
No 180
>PF13245 AAA_19: Part of AAA domain
Probab=93.92 E-value=0.065 Score=36.74 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=17.2
Q ss_pred eEEEEEEcCCCChHH-HHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKT-KIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKT-tla~~v~~~~ 228 (233)
-++..|.|.+|.||| |++..+.+-+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 346778999999999 4555444433
No 181
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.92 E-value=0.051 Score=45.82 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||++.+...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999998764
No 182
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.86 E-value=0.078 Score=51.32 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=38.6
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-..++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+...+
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344668898888888888776442 24556689999999999999998865
No 183
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.85 E-value=0.051 Score=43.89 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
++...|+|.|.+|+|||||.+.+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 45678999999999999999988764
No 184
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.84 E-value=0.055 Score=45.45 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988753
No 185
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.06 Score=48.24 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++.++|..|+||||++.++..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988763
No 186
>PRK12288 GTPase RsgA; Reviewed
Probab=93.82 E-value=0.38 Score=42.76 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=25.1
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+++|.++|.. .++.++|.+|+|||||..++..+
T Consensus 196 ideL~~~L~~-----ki~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 196 LEELEAALTG-----RISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred HHHHHHHHhh-----CCEEEECCCCCCHHHHHHHhccc
Confidence 5566665542 25789999999999999998753
No 187
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.80 E-value=0.069 Score=42.77 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-+.++|..|+|||.||.++.+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~ 70 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE 70 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH
Confidence 45889999999999999999875
No 188
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.79 E-value=0.12 Score=45.31 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=28.8
Q ss_pred HHHHHHHhc-cCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLG-VKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~-~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...|..+|. .+-..-+++-|+|.+|+||||||..+...
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~ 78 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAE 78 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445656665 44445689999999999999999987654
No 189
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.089 Score=44.66 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=33.5
Q ss_pred CccccccchHHHHHHHhc-----------cCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLG-----------VKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~-----------~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.++-|.+-++.++.+-.. .+-+..+=+-++|.+|.|||.||++|.|.-
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 455666666665544321 123446778899999999999999999863
No 190
>PRK10867 signal recognition particle protein; Provisional
Probab=93.79 E-value=0.12 Score=47.28 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+|.++|.+|+||||.+..+...+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 36899999999999999888876654
No 191
>PRK06921 hypothetical protein; Provisional
Probab=93.76 E-value=0.063 Score=45.86 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-+-++|..|+|||+||.++.+.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 46788999999999999999998754
No 192
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.73 E-value=0.059 Score=44.35 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999998764
No 193
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.72 E-value=0.08 Score=46.47 Aligned_cols=45 Identities=27% Similarity=0.210 Sum_probs=31.1
Q ss_pred ccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 182 QLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.++|.++.+..+...+..+ .-+-+.|.+|+|||+||+.+...+.-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~ 69 (329)
T COG0714 25 VVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGL 69 (329)
T ss_pred eeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCC
Confidence 3778666665554433322 23557899999999999999887543
No 194
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71 E-value=0.061 Score=43.33 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 457999999999999999999875
No 195
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.69 E-value=0.085 Score=46.86 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=33.7
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-+.++|.++-+..|...+.. ..+.-+-|.|..|.||||+|+.+++-
T Consensus 15 pf~~ivGq~~~k~al~~~~~~--p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVID--PKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CHHHHhChHHHHHHHHHhccC--CCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 446789988777666553332 22333449999999999999999874
No 196
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.68 E-value=0.064 Score=47.19 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...|+|.|..|.|||||++.+.+.+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999988753
No 197
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.061 Score=45.17 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+..-
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34578999999999999999998753
No 198
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.68 E-value=0.062 Score=44.02 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999988753
No 199
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.68 E-value=0.06 Score=46.82 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+.|+|..|.||||+++++.+.+.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3566999999999999999988763
No 200
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.062 Score=46.77 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=25.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhcCC
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKISSDF 232 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~~~f 232 (233)
...++|||.+|.|||-+|++|+..+..+|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 57899999999999999999998865554
No 201
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.075 Score=50.11 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=38.9
Q ss_pred CccccccchHHHHHHHhccCC----------CCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 181 NQLAGVESRVEEIESLLGVKS----------KDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~----------~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
.++-|++..+.+|.+++.... ...+=+-+.|.+|.|||.||+++.+.+.-.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 667889988988888765321 124557788999999999999999986543
No 202
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.62 E-value=0.067 Score=42.13 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||++.+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 203
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.62 E-value=0.063 Score=44.73 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||++.+...
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999998753
No 204
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.62 E-value=0.071 Score=45.29 Aligned_cols=40 Identities=30% Similarity=0.356 Sum_probs=29.2
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 189 RVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+++.++|.........+.|.|..|.||||+.+++.+.+
T Consensus 112 ~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 112 IPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp CHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred hHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhc
Confidence 3455555555332345788999999999999999988764
No 205
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.61 E-value=0.057 Score=45.84 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||++.+..-
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4579999999999999999988753
No 206
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=93.61 E-value=0.3 Score=33.93 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=48.0
Q ss_pred eEEEcCcccccccchHHHHHHHHhhCCCeEEEeCccC-CCcchHHHHHHHHHhcCceEEEeecCCCCch
Q 043980 26 EVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQLN-RGDEISQSLVNAIEASAISVIIFSESYTSSR 93 (233)
Q Consensus 26 dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~-~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~ 93 (233)
.||||-.-.|... --..|...|.+.|..+..-+.+. .+....+.+.+.|++|++.|.++...|-..+
T Consensus 1 rVFiSSt~~Dl~~-eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~ 68 (83)
T PF13271_consen 1 RVFISSTFRDLKE-ERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP 68 (83)
T ss_pred CEEEecChhhHHH-HHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence 3899977777532 45678888888786654433222 2555667888999999999999999986543
No 207
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.60 E-value=0.062 Score=47.22 Aligned_cols=27 Identities=37% Similarity=0.419 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.+++|+|..|.|||||++.+..-+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345789999999999999999987643
No 208
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.58 E-value=0.087 Score=46.10 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=28.2
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~ 225 (233)
...|.++|..+-....++-|+|.+|+|||+||..+.
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla 117 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLC 117 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHH
Confidence 445666676555557889999999999999998765
No 209
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.58 E-value=0.065 Score=45.46 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999998764
No 210
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.55 E-value=0.11 Score=45.06 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=28.1
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 191 EEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..+..+|..+-....++-|+|.+|+|||||+..+.-.
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455566654445688899999999999999988654
No 211
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.54 E-value=0.07 Score=41.04 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4578999999999999999988653
No 212
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.54 E-value=0.11 Score=49.77 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=38.9
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-..++|.+.-++.|..++..+.- ...+=++|..|+||||+|+.+.+.+.
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl-~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRI-APAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCC-CceEEEECCCCCChHHHHHHHHHHhc
Confidence 446788988888888887775432 24566899999999999999998764
No 213
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.53 E-value=0.067 Score=45.16 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|.|..|.|||||++.+...+
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35689999999999999999987643
No 214
>PRK10646 ADP-binding protein; Provisional
Probab=93.52 E-value=0.12 Score=40.44 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=29.0
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
++..++.+.|...-....+|.+.|-=|.||||+++.+.+.+
T Consensus 12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34455555443322334589999999999999999998864
No 215
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.50 E-value=0.11 Score=49.15 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=39.2
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-.+++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+.+.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 345678999888888888776432 235567899999999999999988753
No 216
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=93.49 E-value=0.066 Score=47.11 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.+++|+|..|.|||||++.+..-+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 345689999999999999999987643
No 217
>PTZ00035 Rad51 protein; Provisional
Probab=93.48 E-value=0.11 Score=45.93 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=29.5
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
...|.++|..+-....++-|+|..|.|||||+..+.-
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~ 140 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCV 140 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHH
Confidence 4556667766555678999999999999999988754
No 218
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.48 E-value=0.072 Score=48.92 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+-+-|+|..|+|||+|++++.+.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35677999999999999999998753
No 219
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.47 E-value=0.068 Score=44.21 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999998763
No 220
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.47 E-value=0.071 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999876
No 221
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.44 E-value=0.072 Score=45.41 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|.|..|.|||||++.+...+
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45799999999999999999987643
No 222
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.42 E-value=0.061 Score=43.21 Aligned_cols=26 Identities=35% Similarity=0.495 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.++||+|..|.|||||..++-.++
T Consensus 31 PGeVLgiVGESGSGKtTLL~~is~rl 56 (258)
T COG4107 31 PGEVLGIVGESGSGKTTLLKCISGRL 56 (258)
T ss_pred CCcEEEEEecCCCcHHhHHHHHhccc
Confidence 35689999999999999999887654
No 223
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.40 E-value=0.071 Score=45.40 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999998764
No 224
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.39 E-value=0.11 Score=51.49 Aligned_cols=49 Identities=18% Similarity=0.374 Sum_probs=36.5
Q ss_pred CCccccccchHHHHHHHhccC------CC-CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVK------SK-DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~------~~-~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...++|.+.-++.+...+... .+ ....+-++|..|+|||+||+++++.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356889988888877755421 11 13477899999999999999998764
No 225
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.39 E-value=0.072 Score=45.03 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999998754
No 226
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.091 Score=45.49 Aligned_cols=50 Identities=28% Similarity=0.471 Sum_probs=35.4
Q ss_pred CccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 181 NQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.++-|.+.++.++.+-... +-....=|-+||.+|.|||-||++|.|+-+.
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA 245 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA 245 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch
Confidence 5566777778777664332 1122345668999999999999999997443
No 227
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.36 E-value=0.08 Score=41.57 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998754
No 228
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.36 E-value=0.071 Score=45.86 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999998764
No 229
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=93.36 E-value=0.073 Score=44.90 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||++.++..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999998764
No 230
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.35 E-value=0.08 Score=41.79 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999998764
No 231
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.34 E-value=0.073 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999864
No 232
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.33 E-value=0.072 Score=45.33 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998764
No 233
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.32 E-value=0.076 Score=45.08 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+..-
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34579999999999999999998753
No 234
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.32 E-value=0.073 Score=45.37 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999988754
No 235
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.31 E-value=0.072 Score=45.55 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 236
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.31 E-value=0.076 Score=44.59 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999865
No 237
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.31 E-value=0.074 Score=46.79 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||++.+..-
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3568999999999999999998764
No 238
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.29 E-value=0.075 Score=43.24 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.+++|.|..|.|||||.+.+....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 345799999999999999999876543
No 239
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=93.28 E-value=0.074 Score=46.84 Aligned_cols=25 Identities=36% Similarity=0.423 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||++.+..-
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl 65 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGL 65 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4578999999999999999998764
No 240
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.27 E-value=0.074 Score=44.62 Aligned_cols=25 Identities=24% Similarity=0.338 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..-.+++|.|..|.|||||++.+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3467899999999999999998865
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.26 E-value=0.11 Score=45.92 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-+-++|..|+|||.||.++.+.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH
Confidence 668899999999999999998874
No 242
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.25 E-value=0.092 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..++.++|.+|+||||++..+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 243
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.25 E-value=0.14 Score=48.05 Aligned_cols=50 Identities=26% Similarity=0.250 Sum_probs=39.0
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.+++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 344678998888888888776442 24566789999999999999988875
No 244
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.23 E-value=0.078 Score=44.56 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||++.+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999874
No 245
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.23 E-value=0.086 Score=43.54 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|+|..|.|||||++.+...+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 45789999999999999999987643
No 246
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.21 E-value=0.083 Score=45.99 Aligned_cols=27 Identities=41% Similarity=0.548 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.++||+|..|.||||+++++..-+
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~ll 55 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLL 55 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhcc
Confidence 346799999999999999999987643
No 247
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.21 E-value=0.079 Score=45.11 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999998764
No 248
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.20 E-value=0.15 Score=46.77 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=31.4
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 189 RVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-..+|.++|..+-..-.++-|.|.+|+|||||+..+....
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~ 104 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARL 104 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3556667776555556799999999999999999987754
No 249
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.083 Score=44.45 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.+++|.|..|.|||||.+.+...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345799999999999999999987643
No 250
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=93.18 E-value=0.084 Score=49.23 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+|+|.|..|.||||+|+.+.+++
T Consensus 284 ~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 284 QPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 251
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.18 E-value=0.083 Score=43.29 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....+++|.|..|.|||||.+.+...
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34568999999999999999998764
No 252
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.16 E-value=0.083 Score=44.64 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|+|..|.|||||.+.+..-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34678999999999999999998864
No 253
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.15 E-value=0.086 Score=42.86 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+..-
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34578999999999999999998753
No 254
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.15 E-value=0.085 Score=43.47 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+...
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999998764
No 255
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.13 E-value=0.082 Score=45.05 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+..-
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34579999999999999999988764
No 256
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.12 E-value=0.086 Score=48.33 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..-+-|+|..|+|||+|++++.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~ 155 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Confidence 45688999999999999999999754
No 257
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.11 E-value=0.13 Score=45.70 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~ 225 (233)
...|.++|..+-....+.-|+|.+|+|||+|+..+.
T Consensus 112 ~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqla 147 (344)
T PLN03187 112 SQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLC 147 (344)
T ss_pred cHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHH
Confidence 445666676555556888899999999999998875
No 258
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.11 E-value=0.13 Score=43.33 Aligned_cols=53 Identities=19% Similarity=0.391 Sum_probs=38.6
Q ss_pred CCCCccccccchHHHHHHHhcc--CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 178 DNKNQLAGVESRVEEIESLLGV--KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.+-..++|.+.+++.|.+-... ..-..+=|-+||..|.||+.|++++++.+..
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~ 111 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD 111 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh
Confidence 4557789999888888663221 1122445668999999999999999998654
No 259
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.10 E-value=0.086 Score=44.81 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|.|..|.|||||.+.++...
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45789999999999999999988654
No 260
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.10 E-value=0.12 Score=48.04 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=32.4
Q ss_pred CccccccchHHHHHHHhc--------cCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLG--------VKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~--------~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.++.|.+.-++.+.+... .+-...+-|-++|.+|.|||.+|+++.+...
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 456776655544443211 1112245677999999999999999998754
No 261
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=93.08 E-value=1.5 Score=34.45 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=19.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..+.++|.+|+|||||...+.+
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~ 137 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRG 137 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999998875
No 262
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.07 E-value=0.087 Score=45.93 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
....+.|.|..|.|||||++++...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 45789999999999999999887643
No 263
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=93.05 E-value=0.11 Score=41.68 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=27.0
Q ss_pred cccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 185 GVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 185 g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
|.++-.+.+.+++. ....+.++|++|+|||||..++.+.
T Consensus 112 gi~eL~~~l~~~l~----~~~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 112 GVEELINAIKKLAK----KGGDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CHHHHHHHHHHHhh----cCCcEEEEcCCCCCHHHHHHHHHHh
Confidence 44444444444442 2246889999999999999998874
No 264
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.03 E-value=0.09 Score=44.70 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|.|..|.|||||.+.+...+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35789999999999999999987644
No 265
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.03 E-value=0.088 Score=44.98 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||++.+..
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 266
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.02 E-value=0.12 Score=45.22 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=30.5
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-...|..+|..+-....++-|+|.+|.|||||+..+..
T Consensus 80 tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 80 TGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 335566676766555678999999999999999998764
No 267
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.02 E-value=0.097 Score=48.45 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+++++|..|+||||++..+...+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999988754
No 268
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.01 E-value=0.11 Score=46.82 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+++.++|..|+||||.+..+...+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887754
No 269
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.01 E-value=0.16 Score=44.73 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=28.5
Q ss_pred HHHHHHHhc-cCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLG-VKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~-~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...|..+|. .+-..-+++-|+|.+|.||||||..+.-.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~ 78 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAE 78 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445556665 44445688889999999999999987643
No 270
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=93.00 E-value=0.076 Score=48.94 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARA 223 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~ 223 (233)
....+++|+|..|.|||||.+.
T Consensus 30 ~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 30 PSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred cCCCEEEEECCCCCCHHHHHhc
Confidence 4568999999999999999873
No 271
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.99 E-value=0.089 Score=45.15 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.+++|.|..|.|||||.+.+...+
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 345799999999999999999987643
No 272
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.14 Score=48.56 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhcCC
Q 043980 181 NQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISSDF 232 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~f 232 (233)
+++-|.++-+++|.+.+.+ +.+.-+=|=.+|.+|.|||++|+++.+.-+.+|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF 496 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF 496 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe
Confidence 4555677777777754432 223346677899999999999999999744443
No 273
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.97 E-value=0.084 Score=43.89 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcC
Confidence 457899999999999999998765
No 274
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.95 E-value=0.094 Score=44.02 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||++.+...
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999998754
No 275
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.93 E-value=0.1 Score=44.22 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...-+.++|.+|+|||.||.++.+++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 456688999999999999999998754
No 276
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.90 E-value=0.13 Score=46.35 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+++.++|..|+||||++..+...+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999887654
No 277
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=92.84 E-value=0.088 Score=48.14 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+-.+|||.|..||||||+++.+..-+
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~i 391 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVI 391 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccc
Confidence 35899999999999999999887543
No 278
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=92.84 E-value=0.095 Score=46.20 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||++.+..-
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGL 70 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4578999999999999999998763
No 279
>PRK08181 transposase; Validated
Probab=92.84 E-value=0.11 Score=44.56 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-+-++|.+|+|||.||.++.+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH
Confidence 348899999999999999998753
No 280
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.84 E-value=0.12 Score=48.19 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=38.9
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....++|....++++.+.+..-...-.-|-|.|..|+|||++|+.+++.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 4567999999898888876553333446679999999999999999985
No 281
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.82 E-value=0.096 Score=44.62 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999998764
No 282
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.81 E-value=0.099 Score=44.75 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999998764
No 283
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.81 E-value=0.16 Score=44.46 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=27.9
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 191 EEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..+..+|..+-....++-|+|.+|.|||++|..+.-.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4455556544445688889999999999999988644
No 284
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=92.80 E-value=0.099 Score=44.55 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||++.+...
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999998754
No 285
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.79 E-value=0.099 Score=44.45 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+...
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34579999999999999999998764
No 286
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.12 Score=46.37 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=33.9
Q ss_pred CccccccchHHHHHHHhc----------cCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 181 NQLAGVESRVEEIESLLG----------VKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~----------~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
+++.|..+.++-|.+-.- .....++-|-++|.+|.|||-||++|+-....
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 556676655554444211 11234677889999999999999999986544
No 287
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.77 E-value=0.11 Score=48.70 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+++|+|.+|+||||++..+...+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999887653
No 288
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=92.76 E-value=0.11 Score=47.70 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+|.+.|.+|+||||+|.++.+++
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999998874
No 289
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=92.74 E-value=0.1 Score=44.32 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988763
No 290
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.73 E-value=0.099 Score=46.27 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||++.+..-
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999988764
No 291
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.72 E-value=0.1 Score=44.70 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999999998764
No 292
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=92.71 E-value=0.15 Score=43.09 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=24.3
Q ss_pred ccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 198 GVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 198 ~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....+....|.+.|..|+|||||..++++.
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 333445678889999999999999999874
No 293
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=92.70 E-value=0.1 Score=44.43 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||++.+...
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999988753
No 294
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.70 E-value=0.14 Score=48.99 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=37.0
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+..-.+++|.+..++.|...+... +.+-++|.+|+||||+|+++.+.+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l 74 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc
Confidence 334567889888777777665533 368889999999999999988764
No 295
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.69 E-value=0.11 Score=40.20 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999998764
No 296
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.68 E-value=0.16 Score=50.37 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=37.3
Q ss_pred CCccccccchHHHHHHHhccCC------C-CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVKS------K-DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~------~-~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...++|.+..++.+...+.... + ....+-+.|..|+|||++|+.+...+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568899988888877654311 1 14567799999999999999998864
No 297
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.65 E-value=0.079 Score=46.78 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
....|.|+|..|.||||+.+++.+.+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 34568899999999999999988754
No 298
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.64 E-value=0.11 Score=44.82 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||++.+...
T Consensus 62 ~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999998764
No 299
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.64 E-value=0.11 Score=50.16 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=36.3
Q ss_pred CCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...++|....++.+.+.+..-...-.-|-|.|..|+|||++|+++++.
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 357899988888887655432222345678999999999999999874
No 300
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=92.64 E-value=0.098 Score=44.38 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4578999999999999999988764
No 301
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.63 E-value=0.12 Score=46.97 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...+++++|..|+||||+...+..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999987654
No 302
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=92.58 E-value=1.2 Score=43.38 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-|+|+|.+|+|||||..++.+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~ 473 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHE 473 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCc
Confidence 467899999999999999988763
No 303
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=92.57 E-value=0.11 Score=46.12 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999988753
No 304
>PLN02674 adenylate kinase
Probab=92.57 E-value=0.21 Score=42.16 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..|-|.|++|.||||+|+.+.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~ 54 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDE 54 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 44678999999999999998875
No 305
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.55 E-value=0.11 Score=44.36 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4578999999999999999998753
No 306
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=92.55 E-value=0.11 Score=44.11 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.+...
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 307
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.55 E-value=0.11 Score=43.80 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998753
No 308
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.48 E-value=0.12 Score=43.88 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+...
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 34578999999999999999998754
No 309
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.46 E-value=0.16 Score=48.34 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=37.4
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-.+++|.+.-++.|...+..+. -...+=++|..|+||||+|+.+.+.+.
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 34567888877777777666432 235677899999999999999988754
No 310
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.46 E-value=0.12 Score=43.79 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+..-
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35679999999999999999998764
No 311
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.46 E-value=0.19 Score=42.88 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=25.9
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+.+..++.. ...++.|.|..|.||||+.+++.+.+
T Consensus 69 ~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 69 LEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 3444444432 23478999999999999999887754
No 312
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.43 E-value=0.13 Score=43.64 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=28.5
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+.|.++|..+-....+.-|+|.+|+|||.||..+.-.
T Consensus 24 ~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 24 CKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp SHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 44566667554444578999999999999999877543
No 313
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.42 E-value=0.12 Score=41.82 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+...
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 34678999999999999999988764
No 314
>PRK09354 recA recombinase A; Provisional
Probab=92.42 E-value=0.25 Score=43.88 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=29.0
Q ss_pred HHHHHHHhc-cCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLG-VKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~-~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...|..+|. .+-..-+++-|+|..|.||||||..+...
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~ 83 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE 83 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455666676 44445689999999999999999987643
No 315
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=92.39 E-value=0.089 Score=48.60 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.|--|+||..|+|||||.+++.+
T Consensus 106 GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 106 GRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ccccceeCCCCCcHHHHHHHHHh
Confidence 46689999999999999999988
No 316
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.38 E-value=0.12 Score=44.47 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999998763
No 317
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.37 E-value=0.12 Score=44.42 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998764
No 318
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=92.31 E-value=0.16 Score=43.76 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=25.8
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+++|...|.. +++++.|..|+|||||.+.+...
T Consensus 152 i~~L~~~L~~-----k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 152 LDELREYLKG-----KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred HHHHHhhhcc-----ceEEEECCCCCCHHHHHHHHhch
Confidence 4555555542 68999999999999999988764
No 319
>PRK03003 GTP-binding protein Der; Reviewed
Probab=92.24 E-value=0.17 Score=46.72 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.....|+|+|.+|+|||||...+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~ 60 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILG 60 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3457799999999999999998765
No 320
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=92.23 E-value=0.14 Score=42.16 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 30 ~G~~~~I~G~nGsGKStLl~~l~G 53 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999998875
No 321
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.21 E-value=0.13 Score=44.16 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 322
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.18 E-value=0.13 Score=44.21 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 323
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.16 E-value=0.14 Score=42.63 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~ 225 (233)
..-.+++|.|..|.|||||-..+.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345689999999999999988765
No 324
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.14 E-value=0.23 Score=46.10 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=32.3
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-...|.++|..+-..-.++-|.|.+|+|||||+..+...
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~ 286 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN 286 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3466777778766666788999999999999999988664
No 325
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.13 E-value=0.095 Score=46.49 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
....|.|.|..|.||||+++++.+.+
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHccc
Confidence 34678899999999999999988754
No 326
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.11 E-value=0.14 Score=44.14 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4578999999999999999998764
No 327
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=92.04 E-value=0.21 Score=42.13 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=25.5
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
++++.+.+.. .++.+.|++|+|||||..++..+
T Consensus 111 i~eLf~~l~~-----~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 111 LKELIEALQN-----RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred HHHHHhhhcC-----CEEEEECCCCCCHHHHHHHHhhh
Confidence 5555555441 47889999999999999998875
No 328
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.04 E-value=0.14 Score=44.04 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999998754
No 329
>PRK00098 GTPase RsgA; Reviewed
Probab=92.04 E-value=0.18 Score=43.72 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=25.5
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+++|.+.+. -.++++.|.+|+|||||.+.+...
T Consensus 155 i~~L~~~l~-----gk~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 155 LDELKPLLA-----GKVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred HHHHHhhcc-----CceEEEECCCCCCHHHHHHHHhCC
Confidence 555655553 257899999999999999988764
No 330
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=92.01 E-value=0.14 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||++.+..-
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999988753
No 331
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.00 E-value=0.14 Score=44.88 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.+...
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998764
No 332
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.00 E-value=0.29 Score=48.41 Aligned_cols=49 Identities=16% Similarity=0.326 Sum_probs=36.4
Q ss_pred CCccccccchHHHHHHHhccC------CC-CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVK------SK-DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~------~~-~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...++|.+.-++.+...+... .+ ....+-++|..|+|||+||+.+.+.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 467899998888887755421 11 13455689999999999999998865
No 333
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.99 E-value=0.14 Score=43.83 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999998764
No 334
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.98 E-value=0.14 Score=44.44 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|+|..|.|||||.+.+....
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999987643
No 335
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.96 E-value=0.15 Score=41.20 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+..-
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999988653
No 336
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.95 E-value=0.15 Score=43.97 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4578999999999999999998764
No 337
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.95 E-value=0.15 Score=43.24 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||++.+..-
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 34579999999999999999988653
No 338
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=91.91 E-value=0.22 Score=44.12 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=30.4
Q ss_pred cchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 187 ESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..-...|.++|..+-....++-|+|.+|+|||+||..++-
T Consensus 106 ~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~ 145 (342)
T PLN03186 106 TTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCV 145 (342)
T ss_pred CCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHH
Confidence 3445566677766555578889999999999999987653
No 339
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.89 E-value=0.17 Score=44.22 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-+-++|..|+|||.||.++.+.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567799999999999999999975
No 340
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.89 E-value=0.12 Score=43.94 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.++-|.|.+|.||||+|.++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~ 58 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAV 58 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357889999999999999998744
No 341
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.87 E-value=0.2 Score=32.99 Aligned_cols=21 Identities=33% Similarity=0.329 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~ 226 (233)
+..|.|..|.|||||.-++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999987643
No 342
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=91.87 E-value=0.35 Score=41.40 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
...-+|||.|..|+||+|+|+.+..-++.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~ 108 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSR 108 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhh
Confidence 34789999999999999999987775543
No 343
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.13 Score=48.59 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=22.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcCC
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKISSDF 232 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~~~~f 232 (233)
.=|-+||.+|.|||-||++|.|.-+-+|
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCce
Confidence 3466899999999999999999744443
No 344
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=91.82 E-value=0.24 Score=43.07 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=38.4
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|....+++|.+.-+..|..-+.. .+....-.+|.+|.|||+-|.++..++-
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 34456678888777777665543 4567778999999999999999888753
No 345
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.78 E-value=0.28 Score=42.57 Aligned_cols=39 Identities=26% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHHhccCC-CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKS-KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 190 ~~~l~~~l~~~~-~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
++.|++++..-. ..-..+-|+|-.|+|||++++.+.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 555566665432 335678899999999999999988753
No 346
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=91.75 E-value=0.24 Score=42.59 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=28.2
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 191 EEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..|.++|..+-...+++-|+|..|.||||||.+++-.
T Consensus 47 ~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~ 83 (279)
T COG0468 47 LALDEALGGGLPRGRITEIYGPESSGKTTLALQLVAN 83 (279)
T ss_pred hhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHH
Confidence 3455556644455799999999999999999986543
No 347
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.70 E-value=0.31 Score=44.85 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+-+-|+|..|.|||+|++++.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~ 166 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIE 166 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHH
Confidence 35578999999999999999998653
No 348
>PRK05973 replicative DNA helicase; Provisional
Probab=91.68 E-value=0.27 Score=41.35 Aligned_cols=25 Identities=16% Similarity=-0.008 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...++-|.|.+|.|||++|..+...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4578889999999999999987553
No 349
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=91.68 E-value=0.17 Score=47.42 Aligned_cols=48 Identities=23% Similarity=0.192 Sum_probs=35.4
Q ss_pred CCCccccccchHHHHHHHhcc-CCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGV-KSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~-~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...+++|....++++.+.+.. ...+ .-|-|+|..|+||+++|+++++.
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~-~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLD-APLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCC-CCEEEECCCCccHHHHHHHHHHh
Confidence 446789998888877765542 2222 33569999999999999998864
No 350
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=91.65 E-value=0.13 Score=47.08 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
.-.++||.|..|+||||.++-+...+..+
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaGel~PN 127 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAGELKPN 127 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhCccccC
Confidence 35799999999999999999887765544
No 351
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.64 E-value=0.17 Score=48.52 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=33.9
Q ss_pred CCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+.++|....++++.+.+..-...-.-|-|+|..|+||+++|+++++.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 355778777777776654432222233669999999999999999985
No 352
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=91.62 E-value=0.16 Score=43.45 Aligned_cols=26 Identities=35% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|+|..|.|||||.+.+...
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999998754
No 353
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.62 E-value=0.49 Score=35.81 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=31.6
Q ss_pred ccccccch----HHHHHHHhcc-CCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 182 QLAGVESR----VEEIESLLGV-KSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 182 ~~~g~~~~----~~~l~~~l~~-~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
++.|..-- ++.|...+.. ..++.-++...|..|+|||-+++.+.+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 34555433 3344444433 3456789999999999999998888776
No 354
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=91.61 E-value=0.15 Score=48.74 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||++.+...
T Consensus 41 ~Ge~~~lvG~nGsGKSTLl~~l~Gl 65 (623)
T PRK10261 41 RGETLAIVGESGSGKSVTALALMRL 65 (623)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4578999999999999999998764
No 355
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=91.59 E-value=0.15 Score=47.63 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|+|..|.|||||++.+..-+
T Consensus 34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 34 AGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999887643
No 356
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.59 E-value=0.16 Score=45.03 Aligned_cols=24 Identities=29% Similarity=0.345 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.++++.|..|.|||||-+.+..
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998864
No 357
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=91.57 E-value=0.25 Score=47.69 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+|.|-|+.|.||||+|+.+.+++.
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~ 467 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALG 467 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhC
Confidence 366899999999999999999998754
No 358
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.57 E-value=0.36 Score=44.99 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=30.6
Q ss_pred cchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 187 ESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..-...|.++|..+-..-.++-|.|.+|.|||+||..+..
T Consensus 14 ~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~ 53 (509)
T PRK09302 14 PTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLV 53 (509)
T ss_pred cCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3445566666765555578999999999999999998654
No 359
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.56 E-value=0.17 Score=43.25 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999998753
No 360
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.56 E-value=0.17 Score=41.10 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-+.++|.|-.|.||+|||+.+..-
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGm 62 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcc
Confidence 4578999999999999999987653
No 361
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=91.54 E-value=0.28 Score=42.86 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=26.6
Q ss_pred HHHHHHh---ccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 191 EEIESLL---GVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 191 ~~l~~~l---~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+|.++| .........|.|+|.+|+||||+...+..+
T Consensus 22 ~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~ 61 (313)
T TIGR00991 22 TKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGE 61 (313)
T ss_pred HHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444 333334567889999999999999998864
No 362
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.50 E-value=0.2 Score=44.65 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+|.|+|..|.||||+.+++.+.+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 363
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.49 E-value=0.17 Score=44.36 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+.|.|..|.||||+++++...+
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3567888999999999999988753
No 364
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=91.49 E-value=0.18 Score=42.58 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc
Confidence 3468999999999999999998764
No 365
>PRK06851 hypothetical protein; Provisional
Probab=91.45 E-value=0.23 Score=44.47 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-+++.|.|.+|+|||||++.++...
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 5789999999999999999999864
No 366
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.40 E-value=0.4 Score=47.61 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=37.2
Q ss_pred CCccccccchHHHHHHHhcc---C----CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGV---K----SKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~---~----~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...++|.+.-++.+.+.+.. + .....++-++|..|+|||.||+++.+.+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999888888776532 1 1224567899999999999999988765
No 367
>PRK00093 GTP-binding protein Der; Reviewed
Probab=91.39 E-value=4.3 Score=36.88 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
+..-|+|+|.+|+|||||..++..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~ 195 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLG 195 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhC
Confidence 356789999999999999998764
No 368
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=91.36 E-value=0.17 Score=47.17 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.+...
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998754
No 369
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.35 E-value=0.2 Score=44.82 Aligned_cols=26 Identities=19% Similarity=0.061 Sum_probs=21.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
+-+.|.|..|.|||||++.+.+.+..
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44589999999999999999887643
No 370
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=91.33 E-value=0.23 Score=45.51 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=35.5
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..++|....+.++...+..-...-.-+-|.|..|+|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46888887777777665433333445779999999999999999885
No 371
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.28 E-value=0.19 Score=43.35 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|.|..|.|||||.+.+...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34579999999999999999998753
No 372
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=91.25 E-value=0.2 Score=46.99 Aligned_cols=47 Identities=26% Similarity=0.423 Sum_probs=36.2
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..++|....++++.+.+..-...-.-|-|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 45889988888887766432222346779999999999999999974
No 373
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=91.24 E-value=0.21 Score=46.99 Aligned_cols=47 Identities=26% Similarity=0.339 Sum_probs=36.3
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..++|....++++.+.+..-...-.-|-|.|..|.||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 45889988888887766432222346679999999999999999986
No 374
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.24 E-value=0.29 Score=44.74 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++.++|.+|+||||.|..+...+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5799999999999999988877654
No 375
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=91.22 E-value=0.27 Score=43.32 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...++|.|+|-||+||||++..+...+
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~l 55 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMM 55 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999888766543
No 376
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=91.22 E-value=0.19 Score=46.81 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|+|..|.|||||.+.+...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (506)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMKVLSGV 54 (506)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999998754
No 377
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=91.22 E-value=0.15 Score=45.98 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+||+|..|.|||||.+++..-+
T Consensus 313 gqTlGlVGESGSGKsTlG~allrL~ 337 (534)
T COG4172 313 GQTLGLVGESGSGKSTLGLALLRLI 337 (534)
T ss_pred CCeEEEEecCCCCcchHHHHHHhhc
Confidence 4789999999999999999988754
No 378
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=91.21 E-value=0.19 Score=43.69 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 379
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.14 E-value=0.18 Score=47.06 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
....++|+|..|.|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998865
No 380
>PRK13409 putative ATPase RIL; Provisional
Probab=91.13 E-value=0.18 Score=47.96 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||++.+...
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl 388 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGV 388 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998764
No 381
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=0.16 Score=47.07 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
....+=++|.+|.|||.||+++.+....+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 35577899999999999999999964433
No 382
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.12 E-value=0.21 Score=43.27 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+.|+.|..|.|||||.+.+...+
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 45799999999999999999987653
No 383
>PRK13409 putative ATPase RIL; Provisional
Probab=91.08 E-value=0.18 Score=47.97 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.++||+|..|+|||||.+.+...
T Consensus 97 ~~Gev~gLvG~NGaGKSTLlkiL~G~ 122 (590)
T PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGE 122 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34679999999999999999987664
No 384
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=0.27 Score=47.73 Aligned_cols=49 Identities=31% Similarity=0.348 Sum_probs=34.9
Q ss_pred CCCccccccchHHHHHHH---hccC-------CCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESL---LGVK-------SKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~---l~~~-------~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.++.|.++-+++|.++ |.+. ..-.+=+=++|.+|.|||-||++++-.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE 367 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE 367 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc
Confidence 446788888777776664 4421 112355678899999999999999864
No 385
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=91.05 E-value=0.19 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||++.+..-
T Consensus 349 ~Ge~~~lvG~nGsGKSTLlk~i~Gl 373 (623)
T PRK10261 349 PGETLSLVGESGSGKSTTGRALLRL 373 (623)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3578999999999999999998753
No 386
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.03 E-value=0.2 Score=44.08 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|+|..|.|||||.+.++...
T Consensus 107 ~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 107 RNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34689999999999999999998643
No 387
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=91.02 E-value=0.2 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHC
Confidence 456899999999999999999875
No 388
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=91.02 E-value=0.18 Score=46.88 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 287 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 311 (506)
T PRK13549 287 RGEILGIAGLVGAGRTELVQCLFGA 311 (506)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 3578999999999999999998753
No 389
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=90.98 E-value=0.2 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl 77 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3568999999999999999998764
No 390
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.96 E-value=0.37 Score=46.14 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=39.9
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|..-..++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+...+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345678999888888888776432 245677999999999999999888653
No 391
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=90.95 E-value=0.19 Score=46.84 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 312 (510)
T PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGV 312 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998753
No 392
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=90.94 E-value=0.18 Score=46.93 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.+++|+|..|.|||||.+.+..-
T Consensus 29 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 54 (510)
T PRK09700 29 YPGEIHALLGENGAGKSTLMKVLSGI 54 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 35679999999999999999988653
No 393
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=90.88 E-value=0.18 Score=46.75 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.++..
T Consensus 273 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 297 (491)
T PRK10982 273 KGEILGIAGLVGAKRTDIVETLFGI 297 (491)
T ss_pred CCcEEEEecCCCCCHHHHHHHHcCC
Confidence 4578999999999999999998753
No 394
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=90.87 E-value=0.22 Score=44.12 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.++||.|..|.|||||.+.+...
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999998764
No 395
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=90.86 E-value=0.2 Score=46.89 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 311 ~Ge~~~i~G~nGsGKSTLlk~l~G 334 (529)
T PRK15134 311 PGETLGLVGESGSGKSTTGLALLR 334 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999875
No 396
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.85 E-value=0.22 Score=42.11 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999988753
No 397
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=90.84 E-value=0.21 Score=37.99 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCceEEEeecCCCCchhhHHHHHHHHH
Q 043980 69 QSLVNAIEASAISVIIFSESYTSSRWCVDELVKILE 104 (233)
Q Consensus 69 ~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~ 104 (233)
.++.++++++++.++|+...-..+.+.. ++...+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~ 37 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPP-DLERYVK 37 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCH-HHHHHHH
Confidence 5678999999999999987655554422 4444443
No 398
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=90.75 E-value=0.42 Score=36.82 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=27.1
Q ss_pred cccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 185 GVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 185 g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
|.+.-.+.+.+++..... ...+.++|.+|+|||||...+.+
T Consensus 83 gi~~L~~~l~~~~~~~~~-~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 83 GTKILRRTIKELAKIDGK-EGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred cHHHHHHHHHHHHhhcCC-CcEEEEECCCCCCHHHHHHHHhC
Confidence 444444455554443333 33458999999999999998875
No 399
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.64 E-value=0.21 Score=42.03 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=24.0
Q ss_pred cCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 199 VKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 199 ~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+-..-.+.+|.|..|+|||||.+.+...+
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 333346799999999999999999887643
No 400
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=90.60 E-value=0.21 Score=47.05 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.+++|.|..|.|||||.+.+...
T Consensus 350 Ge~~~l~G~NGsGKSTLl~~i~G~ 373 (556)
T PRK11819 350 GGIVGIIGPNGAGKSTLFKMITGQ 373 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998754
No 401
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=90.59 E-value=0.2 Score=46.69 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl 312 (510)
T PRK15439 288 AGEILGLAGVVGAGRTELAETLYGL 312 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3578999999999999999998753
No 402
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=90.57 E-value=0.22 Score=46.64 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~ 368 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGE 368 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998753
No 403
>PRK09866 hypothetical protein; Provisional
Probab=90.56 E-value=0.26 Score=47.11 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=30.1
Q ss_pred cchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 187 ESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..++..|.+.|..-.....+++|+|..|.|||||.+++..
T Consensus 52 ~~ri~~L~~~L~Kv~~~~~~valvG~sgaGKSTLiNaL~G 91 (741)
T PRK09866 52 AERHAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVG 91 (741)
T ss_pred HHHHHHHHHHHHHHhccceEEEEECCCCCCHHHHHHHHhC
Confidence 3456666665554333458999999999999999999875
No 404
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=90.56 E-value=0.36 Score=42.81 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=39.8
Q ss_pred CCccccccchHHHHHHHhccCC----CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVKS----KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~----~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+.|+++.++++.+.+.... ..-+++-+.|..|.|||||++.+-+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999998776422 346899999999999999999876644
No 405
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=90.55 E-value=0.25 Score=46.32 Aligned_cols=26 Identities=19% Similarity=0.523 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-+++|+|.+|.|||||.+.+.+++.
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHH
Confidence 46788999999999999999887653
No 406
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=90.55 E-value=0.22 Score=46.95 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-.+++|+|..|.|||||.+.+...+
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999987643
No 407
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.53 E-value=0.32 Score=38.71 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+.-|.|.+|+||||++..+.-.+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 477889999999999999887654
No 408
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=90.52 E-value=0.21 Score=48.46 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..-..|+|+|-.|.|||||+|.+-.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999998754
No 409
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=90.48 E-value=0.22 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.+++|+|..|.|||||.+.+...
T Consensus 278 Ge~~~liG~NGsGKSTLl~~l~G~ 301 (501)
T PRK10762 278 GEILGVSGLMGAGRTELMKVLYGA 301 (501)
T ss_pred CcEEEEecCCCCCHHHHHHHHhCC
Confidence 468999999999999999998754
No 410
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.47 E-value=0.4 Score=43.22 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=16.7
Q ss_pred eEEEEEEcCCCChHHH-HHHH
Q 043980 204 VYALGIWGIGGIGKTK-IARA 223 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTt-la~~ 223 (233)
-+++.++|..|+|||| ||+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKL 223 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKL 223 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHH
Confidence 6899999999999965 5554
No 411
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=90.45 E-value=0.23 Score=46.32 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+..-
T Consensus 309 ~Ge~~~l~G~NGsGKSTLl~~l~Gl 333 (520)
T TIGR03269 309 EGEIFGIVGTSGAGKTTLSKIIAGV 333 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998753
No 412
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.43 E-value=0.33 Score=43.01 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..++.|.|..|.||||+.+++.+.+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35789999999999999999887654
No 413
>PHA02624 large T antigen; Provisional
Probab=90.41 E-value=0.47 Score=45.08 Aligned_cols=29 Identities=24% Similarity=0.130 Sum_probs=25.1
Q ss_pred CCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 200 KSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 200 ~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+..+-+++.++|..|.||||++.++.+-+
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L 455 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLC 455 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 33457899999999999999999998865
No 414
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=90.40 E-value=0.45 Score=41.36 Aligned_cols=52 Identities=27% Similarity=0.254 Sum_probs=37.4
Q ss_pred CCCccccccchHHHH---HHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEI---ESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l---~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.+..++|.+...+.. .+++....-..+-+-+-|.+|.|||+||-++.+.+..
T Consensus 36 ~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred cccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 457788888655542 4444433333577889999999999999999887654
No 415
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=90.38 E-value=0.43 Score=38.90 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=21.0
Q ss_pred CeEEEEEE-cCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIW-GIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~-G~gGiGKTtla~~v~~~~ 228 (233)
..++|+|. +.||+||||+|..+...+
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~l 60 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISL 60 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHH
Confidence 46789998 589999999988776653
No 416
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=90.36 E-value=0.33 Score=45.54 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....+|-++|.+|.||||+|+.++..
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~ 392 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQP 392 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998864
No 417
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=90.36 E-value=0.25 Score=44.34 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaG 62 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAG 62 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 356899999999999999999875
No 418
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=90.35 E-value=0.32 Score=42.85 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=23.6
Q ss_pred CeEEEEE--EcCCCChHHHHHHHHHHHHhc
Q 043980 203 DVYALGI--WGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 203 ~~~~i~i--~G~gGiGKTtla~~v~~~~~~ 230 (233)
.+.+|+| .+.||.|||+++..+.+.++.
T Consensus 48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~ 77 (325)
T PRK00652 48 PVPVIVVGNITVGGTGKTPVVIALAEQLQA 77 (325)
T ss_pred CCCEEEEcCeeCCCCChHHHHHHHHHHHHH
Confidence 4677888 999999999999999887543
No 419
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=90.28 E-value=0.26 Score=44.30 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|.|..|.|||||.+.+..
T Consensus 45 Ge~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999998875
No 420
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.28 E-value=0.26 Score=43.29 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-+-|.|..|.||||+++++.+.+
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999988765
No 421
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=90.22 E-value=0.29 Score=46.99 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+|-+.|++|.||||+|+++.+++.
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l~~~l~ 485 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLVERRLH 485 (632)
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHH
Confidence 67999999999999999999988753
No 422
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=90.22 E-value=0.28 Score=41.18 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-..+||+|..|.|||||.+.+..-
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCc
Confidence 3468999999999999999987653
No 423
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=90.10 E-value=0.23 Score=46.76 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 347 ~Ge~~~l~G~NGsGKSTLl~~l~G~ 371 (552)
T TIGR03719 347 PGGIVGVIGPNGAGKSTLFRMITGQ 371 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3468999999999999999998753
No 424
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=90.07 E-value=0.25 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.+++|+|..|.|||||.+.+...
T Consensus 345 Ge~~~l~G~NGsGKSTLlk~l~G~ 368 (635)
T PRK11147 345 GDKIALIGPNGCGKTTLLKLMLGQ 368 (635)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998764
No 425
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=90.06 E-value=0.63 Score=40.64 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.3
Q ss_pred CeEEEEEEc-CCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWG-IGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G-~gGiGKTtla~~v~~~~ 228 (233)
..++|+|+| -||+||||+|..+...+
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~l 118 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAA 118 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 468899885 89999999999876654
No 426
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=90.02 E-value=0.51 Score=42.66 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=33.2
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 189 RVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
...++...|..+-..-.++-|=|-+|||||||.-.+..++..
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~ 119 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK 119 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHh
Confidence 456666767665556688999999999999999999887653
No 427
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=89.98 E-value=0.25 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 285 ~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 285 PGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 356899999999999999999876
No 428
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=89.96 E-value=0.3 Score=48.38 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=23.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+|+|-|.+|.||||+|+.+..++.
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~ 59 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLG 59 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998764
No 429
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=89.95 E-value=0.26 Score=47.34 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.+...
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~ 361 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGE 361 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999998764
No 430
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=89.94 E-value=0.24 Score=46.01 Aligned_cols=25 Identities=16% Similarity=0.571 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.+...
T Consensus 278 ~Ge~~~iiG~NGsGKSTLlk~l~G~ 302 (501)
T PRK11288 278 AGEIVGLFGLVGAGRSELMKLLYGA 302 (501)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHcCC
Confidence 3578999999999999999988753
No 431
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=89.88 E-value=0.26 Score=45.72 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 285 ~Ge~~~l~G~NGsGKSTLl~~l~G~ 309 (500)
T TIGR02633 285 RGEILGVAGLVGAGRTELVQALFGA 309 (500)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998754
No 432
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=89.88 E-value=0.26 Score=46.10 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..-.++||+|..|.||||+|.++..-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gl 58 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGL 58 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Confidence 45689999999999999999998763
No 433
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=89.86 E-value=0.26 Score=45.61 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-..+||+|..|.||||||+.+-.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHc
Confidence 346899999999999999998754
No 434
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=89.83 E-value=0.27 Score=46.25 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....+++|+|..|.|||||.+.+...
T Consensus 29 ~~Ge~~~liG~NGsGKSTLl~~i~G~ 54 (552)
T TIGR03719 29 FPGAKIGVLGLNGAGKSTLLRIMAGV 54 (552)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999998764
No 435
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=89.83 E-value=0.27 Score=46.19 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-.-|+|+|..|+|||||.+.+...+
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhc
Confidence 4568999999999999999986654
No 436
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.78 E-value=0.42 Score=47.31 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=31.0
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....++-|..-.+ .|.. ....+++-|.|.+|.||||++....++
T Consensus 12 ~~~~~~~R~rl~~----~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~ 55 (903)
T PRK04841 12 RLHNTVVRERLLA----KLSG-ANNYRLVLVTSPAGYGKTTLISQWAAG 55 (903)
T ss_pred CccccCcchHHHH----HHhc-ccCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4455666664333 3332 235789999999999999999987654
No 437
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=89.74 E-value=0.27 Score=46.43 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-..++|+|..|.|||||++.+...
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3467999999999999999998764
No 438
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.69 E-value=0.62 Score=42.34 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=35.4
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
....|.......|.+++. +-....++.|-|.+|.|||++|..+...+
T Consensus 172 ~~~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~ 218 (421)
T TIGR03600 172 GELTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENV 218 (421)
T ss_pred CCCcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 345677777777777765 43446788899999999999999887543
No 439
>PLN03073 ABC transporter F family; Provisional
Probab=89.69 E-value=0.27 Score=47.91 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-..+||+|..|.|||||.+.+..
T Consensus 202 ~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 202 FGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 356799999999999999999864
No 440
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=0.34 Score=45.25 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=32.4
Q ss_pred CCccccccchHHHHHH---HhccCC-------CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIES---LLGVKS-------KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~---~l~~~~-------~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+++-|.++.+.+|++ .|..-. .=.+=|-++|.+|.|||-||++|...
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 3567788765555554 454211 11344668899999999999998764
No 441
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=89.64 E-value=0.33 Score=40.22 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...+|+|+|..|.|||||.+.+...
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4688999999999999999887664
No 442
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=89.61 E-value=0.32 Score=43.49 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998865
No 443
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.59 E-value=0.47 Score=40.66 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
+..-++|.|..|.|||||.+.+...+.
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 467899999999999999999887543
No 444
>PRK01889 GTPase RsgA; Reviewed
Probab=89.58 E-value=0.5 Score=42.09 Aligned_cols=35 Identities=17% Similarity=0.416 Sum_probs=27.8
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 189 RVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+++|..+|.. ...++++|..|+|||||...+...
T Consensus 184 gl~~L~~~L~~----g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 184 GLDVLAAWLSG----GKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred cHHHHHHHhhc----CCEEEEECCCCccHHHHHHHHHHh
Confidence 36677776642 358899999999999999998764
No 445
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.47 E-value=0.36 Score=47.09 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+++++|..|+||||++.++...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999999887654
No 446
>PLN02772 guanylate kinase
Probab=89.46 E-value=0.38 Score=43.39 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+++.|.|..|+||+||++.+..+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 46899999999999999999987754
No 447
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=89.43 E-value=0.5 Score=36.53 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+...+++.|.+|+||+||...+.+.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~ 123 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNK 123 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcc
Confidence 3566889999999999999988764
No 448
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=89.40 E-value=0.61 Score=36.25 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=29.8
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
....++-+.|...-..--+|.+-|-=|.|||||+|.+...+
T Consensus 9 ~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~L 49 (149)
T COG0802 9 EATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGL 49 (149)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHc
Confidence 34455555554443445688999999999999999998764
No 449
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=0.51 Score=46.06 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=37.1
Q ss_pred CCccccccchHHHHHHHhccC-------CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 180 KNQLAGVESRVEEIESLLGVK-------SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~-------~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+++|.+..++.+.+-+... ...+.+.-..|+.|+|||.||+++...+.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf 546 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF 546 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc
Confidence 367899998888887654432 12245666789999999999999888653
No 450
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=89.33 E-value=0.31 Score=46.91 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 043980 206 ALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
-+.++|.+|.||||+|+.+.+...
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcC
Confidence 388999999999999999988754
No 451
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=89.28 E-value=0.3 Score=46.03 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
....++|+|..|.|||||++.+.+
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r 377 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLR 377 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356799999999999999998765
No 452
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=89.28 E-value=0.22 Score=40.86 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-+|++.|..|.|||||+-++++.+
T Consensus 30 ~Pl~igfSgPQGsGKstl~~ald~~l 55 (282)
T KOG2878|consen 30 VPLVIGFSGPQGSGKSTLVFALDYKL 55 (282)
T ss_pred CcEEEEecCCCCCCceeehhhhHHHH
Confidence 36789999999999999999998864
No 453
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=89.21 E-value=0.35 Score=43.57 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.+++|.|..|.|||||.+.+..-
T Consensus 50 Gei~~I~G~nGsGKSTLlr~L~Gl 73 (382)
T TIGR03415 50 GEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998763
No 454
>PLN03073 ABC transporter F family; Provisional
Probab=89.16 E-value=0.32 Score=47.38 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.+++|+|..|.|||||.+.+...
T Consensus 535 Ge~i~LvG~NGsGKSTLLk~L~Gl 558 (718)
T PLN03073 535 DSRIAMVGPNGIGKSTILKLISGE 558 (718)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999998764
No 455
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=89.10 E-value=0.49 Score=37.28 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=22.3
Q ss_pred HHHHhccCCCCeEEEEEEcCCCChHHHHH--HHHHH
Q 043980 193 IESLLGVKSKDVYALGIWGIGGIGKTKIA--RAIFD 226 (233)
Q Consensus 193 l~~~l~~~~~~~~~i~i~G~gGiGKTtla--~~v~~ 226 (233)
+.++++. .+.++|||.||+-+|||.-+ ..||-
T Consensus 45 maEl~K~--~Gh~lIGiRGmPRVGKTEsivAasVcA 78 (192)
T PF11868_consen 45 MAELFKE--EGHKLIGIRGMPRVGKTESIVAASVCA 78 (192)
T ss_pred HHHHHHh--cCceEEeecCCCccCchhHHHHHhhhc
Confidence 3444443 46899999999999998644 44543
No 456
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=89.09 E-value=0.35 Score=45.40 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|.|..|.|||||.+.+...
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3578999999999999999998764
No 457
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=88.99 E-value=0.34 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
....++|+|..|.|||||++.+..
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999998765
No 458
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.89 E-value=0.62 Score=42.79 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=43.9
Q ss_pred CCCCCccccccchHHHHHHHhcc--CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGV--KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~--~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+..++||+.++..+.+++.. +.+....+=|.|.+|.|||.+...++.+..
T Consensus 146 t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~ 200 (529)
T KOG2227|consen 146 TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLS 200 (529)
T ss_pred cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhh
Confidence 44667899999999999998764 445567888999999999999999988753
No 459
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.79 E-value=0.78 Score=41.81 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=33.4
Q ss_pred ccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 182 QLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...|.......|.+++. +-....++.|-|.+|+||||++..+...
T Consensus 174 ~~~gi~tG~~~LD~~~~-G~~~G~l~vi~g~pg~GKT~~~l~~a~~ 218 (434)
T TIGR00665 174 GITGVPTGFTDLDKLTS-GLQPSDLIILAARPSMGKTAFALNIAEN 218 (434)
T ss_pred CCCcccCCchhhHhhcC-CCCCCeEEEEEeCCCCChHHHHHHHHHH
Confidence 45566666677777653 3344678899999999999999987665
No 460
>COG1162 Predicted GTPases [General function prediction only]
Probab=88.69 E-value=0.5 Score=40.99 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=26.7
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..+++|..+|. -++..+.|..|+|||||..++-.
T Consensus 153 ~~~~~l~~~l~-----~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 153 DGLEELAELLA-----GKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred ccHHHHHHHhc-----CCeEEEECCCCCcHHHHHHhhCc
Confidence 34677777776 23778899999999999998765
No 461
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=88.68 E-value=0.36 Score=43.61 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+-++|..|+||||+|+.+.+.+-
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45677899999999999999988653
No 462
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.64 E-value=0.73 Score=43.95 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+-+-|+|-.|.|||.|++++.+.+.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 35588999999999999999999753
No 463
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=88.61 E-value=0.37 Score=45.25 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....++|+|..|.|||||++.+...
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988764
No 464
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.60 E-value=0.4 Score=41.82 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~ 225 (233)
+...+.||.|..|.|||||.+.+-
T Consensus 30 ~~GeI~GIIG~SGAGKSTLiR~iN 53 (339)
T COG1135 30 PKGEIFGIIGYSGAGKSTLLRLIN 53 (339)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHh
Confidence 345799999999999999999763
No 465
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=88.58 E-value=0.58 Score=37.19 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.++++|++++|||||..++.+.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRS 140 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 356889999999999999998763
No 466
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=88.54 E-value=0.36 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-..++|+|..|.|||||++.+..-
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999987653
No 467
>PRK15494 era GTPase Era; Provisional
Probab=88.51 E-value=0.36 Score=42.66 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..-|+|+|.+|+|||||...+..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~ 74 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIG 74 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhC
Confidence 45789999999999999998765
No 468
>PHA02542 41 41 helicase; Provisional
Probab=88.50 E-value=0.8 Score=42.46 Aligned_cols=46 Identities=7% Similarity=-0.041 Sum_probs=34.6
Q ss_pred cccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 183 LAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 183 ~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..|...-...|.+++..+-..-.++-|-|.+|+||||+|..+....
T Consensus 169 ~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~ 214 (473)
T PHA02542 169 ANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADY 214 (473)
T ss_pred CCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHH
Confidence 5666667777877764444445677788999999999999887654
No 469
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=88.44 E-value=0.61 Score=45.51 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
++..|.|.+|.||||+++++.+.+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999987754
No 470
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=88.44 E-value=0.43 Score=46.06 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+..++.++|++|.||||+|+.+.+.+
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l 239 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYF 239 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHH
Confidence 35689999999999999999987764
No 471
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.43 E-value=0.41 Score=45.34 Aligned_cols=50 Identities=28% Similarity=0.336 Sum_probs=36.0
Q ss_pred CCCCccccccchHHHHHHHhcc---CC-------CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGV---KS-------KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~---~~-------~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....++.|.++.++++.++++. .. .-.+=+.++|.+|.|||.||+++...
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE 206 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE 206 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc
Confidence 3456778888777777665442 11 11455788899999999999999875
No 472
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.34 E-value=0.42 Score=38.75 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.8
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHH
Q 043980 201 SKDVYALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 201 ~~~~~~i~i~G~gGiGKTtla~~v 224 (233)
.++.-+|+|.|-.|.||+|+.+++
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCi 52 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCI 52 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHH
Confidence 345679999999999999999986
No 473
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=88.25 E-value=0.41 Score=40.35 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=58.9
Q ss_pred CCCcceEEEcCcccccccchHHHHHHHHh--hCCCeEEEeC----ccCCCcchHHHHHHHH-HhcCceEEEeecCCCCch
Q 043980 21 NNKKYEVFVSFRGEDTRDKFTSHLYSALS--RQSIQTFIDD----QLNRGDEISQSLVNAI-EASAISVIIFSESYTSSR 93 (233)
Q Consensus 21 ~~~~~dVFISy~~~D~~~~f~~~L~~~L~--~~gi~~~~d~----~~~~G~~~~~~i~~~i-~~s~~~i~v~S~~y~~S~ 93 (233)
.++.||+=|||.|+- +..++.....++ ...+..|+|. -+-+++ +.+-+...- ..|+..++.+..||..-.
T Consensus 174 ~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K~ 250 (329)
T COG4916 174 SEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICKS 250 (329)
T ss_pred cccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEee
Confidence 678899999999975 569999999998 4458889886 233443 223333332 367778888899999999
Q ss_pred hhHHHHHHHH
Q 043980 94 WCVDELVKIL 103 (233)
Q Consensus 94 wc~~El~~~~ 103 (233)
||.-|...+-
T Consensus 251 ~c~~E~~~~r 260 (329)
T COG4916 251 TCHIEGLEGR 260 (329)
T ss_pred eeccchhhcc
Confidence 9999877643
No 474
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=88.20 E-value=0.43 Score=46.44 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-..++|+|..|.|||||++.+..-
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999988764
No 475
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=88.03 E-value=0.42 Score=46.35 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-..++|+|..|.|||||++.+..
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998765
No 476
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=87.98 E-value=0.71 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
++..|.|.+|.||||+++.+.+.+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~ 392 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAW 392 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHH
Confidence 477899999999999999987654
No 477
>PRK13764 ATPase; Provisional
Probab=87.97 E-value=0.52 Score=44.87 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..|-|.|..|.||||+++++.+.+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4478999999999999999887653
No 478
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=87.86 E-value=0.77 Score=38.57 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=27.1
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 192 EIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 192 ~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...+.|. ++..+++|+.|.||.||+|++.++.++
T Consensus 109 ~~~e~L~--~n~~~l~glag~pGtgkst~~a~v~~a 142 (323)
T KOG2702|consen 109 VKYEALT--SNNEELTGLAGRPGTGKSTRIAAVDNA 142 (323)
T ss_pred HHHHHhc--ccchheeeeecCCCCcchhHHHHHHhh
Confidence 3344444 456789999999999999999999885
No 479
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.84 E-value=0.81 Score=42.84 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=31.4
Q ss_pred chHHHHHHHhc-----cCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 188 SRVEEIESLLG-----VKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 188 ~~~~~l~~~l~-----~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-+.++..||. ...-+.+++=|+|..|.||||-.+.+...+
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 34667777877 333457899999999999999999877653
No 480
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=87.83 E-value=0.43 Score=44.82 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-..++|+|..|.|||||++.+..
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999998865
No 481
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=87.82 E-value=0.45 Score=44.78 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-..++|+|..|.|||||++.+...
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999987654
No 482
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=87.79 E-value=0.44 Score=45.14 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-..++|+|..|.|||||++.+...
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999987653
No 483
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=87.69 E-value=1.1 Score=40.36 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=20.8
Q ss_pred CeEEEEEE-cCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIW-GIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~-G~gGiGKTtla~~v~~~~ 228 (233)
..++|+|. .-||+||||+|..+...+
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~L 129 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYL 129 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHH
Confidence 35788887 789999999998876643
No 484
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=87.68 E-value=0.47 Score=44.30 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
....++|+|..|.|||||++.+..
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998765
No 485
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=87.64 E-value=0.46 Score=44.99 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-..++|+|..|.|||||++.+..
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999998755
No 486
>smart00350 MCM minichromosome maintenance proteins.
Probab=87.59 E-value=0.9 Score=42.46 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=32.9
Q ss_pred CCCccccccchHHHHHHHhccCC-----CCeE-----EEEEEcCCCChHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKS-----KDVY-----ALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~-----~~~~-----~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.+.+.|.+.-+..+.-.|-.+. ++.+ =|-|+|-+|.|||++|+.+++-
T Consensus 201 i~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~ 259 (509)
T smart00350 201 LAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKT 259 (509)
T ss_pred hCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHH
Confidence 35678888876555544443321 1111 3678999999999999999874
No 487
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=87.57 E-value=0.48 Score=39.90 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.=..|+|..|.|||||.+.+.-
T Consensus 58 e~W~I~G~NGsGKTTLL~ll~~ 79 (257)
T COG1119 58 EHWAIVGPNGAGKTTLLSLLTG 79 (257)
T ss_pred CcEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999997654
No 488
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=87.52 E-value=0.57 Score=39.76 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-.+|-|=|.+|+||||+|..+.+++
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rL 113 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRL 113 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHc
Confidence 4566677999999999999999874
No 489
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.48 E-value=0.63 Score=41.77 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+-|+|..|.||||+..++.+.+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998765
No 490
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=87.46 E-value=0.49 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-..++|+|..|.|||||++.+..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998765
No 491
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=87.31 E-value=0.47 Score=44.93 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-..++|+|..|.|||||++.+...
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999988664
No 492
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=87.30 E-value=0.53 Score=43.88 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..++.|.+.-++.+.-.. .+...+.+.|.+|.||||||+.+..
T Consensus 191 ~~dv~Gq~~~~~al~~aa----~~g~~vlliG~pGsGKTtlar~l~~ 233 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAA----AGGHNLLLFGPPGSGKTMLASRLQG 233 (499)
T ss_pred HHHhcCcHHHHhhhhhhc----cCCCEEEEEecCCCCHHHHHHHHhc
Confidence 355667655544443322 2335788999999999999999875
No 493
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=87.28 E-value=1.3 Score=40.05 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.0
Q ss_pred CeEEEEEE-cCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIW-GIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~-G~gGiGKTtla~~v~~~~ 228 (233)
..++|+|. .-||+||||++..+...+
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~L 131 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWL 131 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHH
Confidence 36788888 679999999999877654
No 494
>PRK15115 response regulator GlrR; Provisional
Probab=87.20 E-value=0.82 Score=41.58 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=30.6
Q ss_pred ccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 182 QLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.++|....+..+.+....-...-..+-|.|..|.|||++|+.+++.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 4667666565554433221222234668999999999999999874
No 495
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=87.17 E-value=0.52 Score=44.55 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....++|+|..|.|||||++.+..-
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~ 364 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRH 364 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999988653
No 496
>PRK05748 replicative DNA helicase; Provisional
Probab=87.09 E-value=1.1 Score=41.15 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=33.4
Q ss_pred ccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 182 QLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...|...-...|.+++. +-....++.|-|.+|.||||+|..+....
T Consensus 182 ~~~gi~TG~~~LD~~~~-G~~~G~livIaarpg~GKT~~al~ia~~~ 227 (448)
T PRK05748 182 DITGIPTGFTDLDKMTS-GLQPNDLIIVAARPSVGKTAFALNIAQNV 227 (448)
T ss_pred CCCCccCChHHHHHhcC-CCCCCceEEEEeCCCCCchHHHHHHHHHH
Confidence 34566666666766654 33446788899999999999999887653
No 497
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.07 E-value=0.78 Score=44.64 Aligned_cols=49 Identities=24% Similarity=0.378 Sum_probs=34.6
Q ss_pred CccccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGV----------KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.++-|.++-+.++.+-+.. +-.+..=|-++|.+|.|||-||++|+-..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs 730 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS 730 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce
Confidence 4566777777777764443 112244567899999999999999987643
No 498
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=86.97 E-value=1.4 Score=37.37 Aligned_cols=42 Identities=21% Similarity=0.136 Sum_probs=28.5
Q ss_pred cchHHHHHHHhcc--CCCCeEEEEEE-cCCCChHHHHHHHHHHHH
Q 043980 187 ESRVEEIESLLGV--KSKDVYALGIW-GIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 187 ~~~~~~l~~~l~~--~~~~~~~i~i~-G~gGiGKTtla~~v~~~~ 228 (233)
.+..+.|..-|.. ...+.++|+|. +.||.||||+|..+...+
T Consensus 84 ~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~l 128 (274)
T TIGR03029 84 VEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVF 128 (274)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHH
Confidence 3446666554432 23457888888 778999999998776643
No 499
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=86.84 E-value=0.4 Score=42.32 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=20.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..+-|-|.|-.|.|||||..++..-
T Consensus 172 ~r~NILisGGTGSGKTTlLNal~~~ 196 (355)
T COG4962 172 IRCNILISGGTGSGKTTLLNALSGF 196 (355)
T ss_pred hceeEEEeCCCCCCHHHHHHHHHhc
Confidence 3456789999999999999987653
No 500
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.82 E-value=0.39 Score=44.82 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=35.9
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-++++|.+.-.+.|...+..+.- ..-.-..|..|+||||+|+.+...+
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri-~hAYlfsG~RGvGKTt~Ari~Akal 62 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRI-AHAYLFSGPRGVGKTTIARILAKAL 62 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcc-hhhhhhcCCCCcCchhHHHHHHHHh
Confidence 345679998888888877765432 2334456999999999999887754
Done!