Query 043980
Match_columns 233
No_of_seqs 193 out of 1955
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 17:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 2.3E-47 8E-52 307.9 7.2 154 20-176 31-195 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 5.5E-46 1.9E-50 295.1 5.0 154 21-176 5-165 (176)
3 3h16_A TIR protein; bacteria T 100.0 5E-33 1.7E-37 217.6 4.5 119 20-139 16-135 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 5.3E-29 1.8E-33 192.9 0.6 135 20-156 6-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 3.9E-25 1.3E-29 171.8 2.1 97 21-119 2-103 (149)
6 2js7_A Myeloid differentiation 99.9 8.3E-25 2.8E-29 171.8 3.6 99 21-121 13-116 (160)
7 2j67_A TOLL like receptor 10; 99.9 1.1E-24 3.9E-29 173.8 3.5 98 20-119 31-133 (178)
8 1t3g_A X-linked interleukin-1 99.9 5.3E-24 1.8E-28 167.1 6.0 97 23-119 1-111 (159)
9 3j0a_A TOLL-like receptor 5; m 99.7 5.5E-18 1.9E-22 163.7 7.1 99 21-121 667-773 (844)
10 2a5y_B CED-4; apoptosis; HET: 98.9 5.9E-10 2E-14 102.8 4.7 50 184-233 131-185 (549)
11 3sfz_A APAF-1, apoptotic pepti 98.8 4.5E-09 1.5E-13 104.1 4.9 51 177-227 120-170 (1249)
12 1z6t_A APAF-1, apoptotic prote 98.7 6.1E-09 2.1E-13 96.3 5.0 51 177-227 120-170 (591)
13 1vt4_I APAF-1 related killer D 98.5 6.2E-08 2.1E-12 94.7 4.2 51 182-233 129-181 (1221)
14 1eiw_A Hypothetical protein MT 98.0 4.6E-06 1.6E-10 60.7 4.3 63 23-104 3-65 (111)
15 1w5s_A Origin recognition comp 97.9 1.1E-05 3.7E-10 70.7 6.1 51 179-229 20-77 (412)
16 2qby_A CDC6 homolog 1, cell di 97.9 1.2E-05 3.9E-10 69.6 5.5 51 179-229 18-70 (386)
17 1jbk_A CLPB protein; beta barr 97.9 1.8E-05 6.3E-10 61.1 5.9 49 178-228 19-67 (195)
18 2qen_A Walker-type ATPase; unk 97.9 1E-05 3.5E-10 69.0 4.7 46 178-227 9-54 (350)
19 1njg_A DNA polymerase III subu 97.8 2.6E-05 8.8E-10 62.4 5.8 51 178-229 20-70 (250)
20 2chg_A Replication factor C sm 97.7 3.8E-05 1.3E-09 60.7 5.9 49 178-228 14-62 (226)
21 2qby_B CDC6 homolog 3, cell di 97.7 2.9E-05 9.9E-10 67.4 5.3 49 180-228 19-69 (384)
22 2p65_A Hypothetical protein PF 97.7 3.5E-05 1.2E-09 59.5 5.2 49 178-228 19-67 (187)
23 2v1u_A Cell division control p 97.7 2.8E-05 9.5E-10 67.2 4.6 50 179-228 17-68 (387)
24 1fnn_A CDC6P, cell division co 97.6 0.00011 3.7E-09 63.7 6.6 52 179-230 15-70 (389)
25 1sxj_B Activator 1 37 kDa subu 97.4 0.00018 6.3E-09 60.6 5.9 49 178-228 18-66 (323)
26 1iqp_A RFCS; clamp loader, ext 97.4 0.0002 6.7E-09 60.5 6.1 50 177-228 21-70 (327)
27 3h4m_A Proteasome-activating n 97.4 0.0001 3.6E-09 61.4 3.6 51 179-229 15-76 (285)
28 3n70_A Transport activator; si 97.4 0.00011 3.8E-09 55.4 3.5 46 182-227 2-47 (145)
29 3pfi_A Holliday junction ATP-d 97.4 0.00011 3.7E-09 62.9 3.8 54 178-231 26-82 (338)
30 3b9p_A CG5977-PA, isoform A; A 97.3 0.00019 6.4E-09 60.3 4.9 51 179-229 19-79 (297)
31 1sxj_D Activator 1 41 kDa subu 97.3 0.00036 1.2E-08 59.7 6.5 51 177-229 33-83 (353)
32 3cf0_A Transitional endoplasmi 97.3 0.00018 6.3E-09 60.9 4.2 50 180-229 14-74 (301)
33 3d8b_A Fidgetin-like protein 1 97.2 0.00027 9.3E-09 61.4 4.9 51 179-229 82-142 (357)
34 1hqc_A RUVB; extended AAA-ATPa 97.2 0.00013 4.4E-09 61.9 2.5 53 178-230 9-64 (324)
35 3eie_A Vacuolar protein sortin 97.2 0.00037 1.3E-08 59.5 5.0 52 179-230 16-77 (322)
36 1jr3_A DNA polymerase III subu 97.1 0.00065 2.2E-08 58.5 5.9 51 178-229 13-63 (373)
37 1lv7_A FTSH; alpha/beta domain 97.1 0.00038 1.3E-08 57.2 4.1 51 179-229 10-70 (257)
38 2chq_A Replication factor C sm 97.1 0.00057 1.9E-08 57.4 5.2 48 179-228 15-62 (319)
39 2r62_A Cell division protease 97.0 0.0003 1E-08 58.1 3.1 52 179-230 9-70 (268)
40 3syl_A Protein CBBX; photosynt 97.0 0.00043 1.5E-08 58.2 4.1 47 182-228 32-91 (309)
41 1sxj_A Activator 1 95 kDa subu 97.0 0.00053 1.8E-08 62.5 5.0 52 177-228 35-101 (516)
42 3uk6_A RUVB-like 2; hexameric 97.0 0.00068 2.3E-08 58.5 5.1 51 180-230 43-96 (368)
43 1in4_A RUVB, holliday junction 97.0 0.00048 1.6E-08 59.2 4.1 50 180-229 24-76 (334)
44 3ec2_A DNA replication protein 97.0 0.00046 1.6E-08 53.6 3.6 26 204-229 38-63 (180)
45 1sxj_E Activator 1 40 kDa subu 97.0 0.00063 2.2E-08 58.3 4.7 49 178-228 11-60 (354)
46 3pvs_A Replication-associated 96.9 0.00068 2.3E-08 60.8 4.6 51 178-230 23-76 (447)
47 3pxg_A Negative regulator of g 96.9 0.0011 3.8E-08 59.7 6.0 48 179-228 178-225 (468)
48 2qp9_X Vacuolar protein sortin 96.9 0.0009 3.1E-08 58.1 4.9 52 179-230 49-110 (355)
49 2w58_A DNAI, primosome compone 96.9 0.00094 3.2E-08 52.6 4.6 25 205-229 55-79 (202)
50 1ofh_A ATP-dependent HSL prote 96.9 0.00053 1.8E-08 57.4 3.2 49 181-229 15-75 (310)
51 3vfd_A Spastin; ATPase, microt 96.9 0.001 3.5E-08 58.2 5.2 51 179-229 113-173 (389)
52 3co5_A Putative two-component 96.9 0.00013 4.3E-09 55.0 -0.7 47 181-227 4-50 (143)
53 3te6_A Regulatory protein SIR3 96.9 0.00048 1.7E-08 59.1 2.9 47 183-229 22-70 (318)
54 3bos_A Putative DNA replicatio 96.8 0.0013 4.5E-08 52.6 5.3 47 181-229 28-77 (242)
55 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.00094 3.2E-08 57.2 4.5 50 179-228 10-69 (322)
56 1d2n_A N-ethylmaleimide-sensit 96.7 0.0019 6.5E-08 53.5 5.5 50 181-230 33-90 (272)
57 1odf_A YGR205W, hypothetical 3 96.7 0.0023 7.7E-08 54.1 5.9 29 200-228 27-55 (290)
58 3hws_A ATP-dependent CLP prote 96.7 0.0014 4.8E-08 56.8 4.6 47 183-229 17-76 (363)
59 1sxj_C Activator 1 40 kDa subu 96.7 0.0024 8.1E-08 54.7 5.9 49 179-229 23-71 (340)
60 4fcw_A Chaperone protein CLPB; 96.6 0.0012 4.2E-08 55.4 3.8 48 181-228 17-71 (311)
61 3u61_B DNA polymerase accessor 96.6 0.0017 6E-08 55.0 4.7 52 177-229 22-73 (324)
62 3pxi_A Negative regulator of g 96.6 0.0022 7.6E-08 61.1 5.5 48 179-228 178-225 (758)
63 4b4t_K 26S protease regulatory 96.6 0.0019 6.5E-08 57.6 4.6 52 179-230 170-232 (428)
64 1ypw_A Transitional endoplasmi 96.5 0.0013 4.5E-08 63.2 3.6 50 180-229 203-263 (806)
65 3hu3_A Transitional endoplasmi 96.5 0.0014 4.8E-08 59.5 3.5 50 180-229 203-263 (489)
66 1l8q_A Chromosomal replication 96.5 0.0023 8E-08 54.3 4.7 37 192-228 25-61 (324)
67 4b4t_L 26S protease subunit RP 96.5 0.0022 7.4E-08 57.4 4.6 52 179-230 179-241 (437)
68 4b4t_J 26S protease regulatory 96.5 0.0019 6.5E-08 57.1 4.0 53 179-231 146-209 (405)
69 2zan_A Vacuolar protein sortin 96.4 0.0019 6.6E-08 57.7 3.8 50 179-228 132-191 (444)
70 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0037 1.3E-07 51.0 5.1 27 204-230 39-65 (262)
71 4b4t_H 26S protease regulatory 96.4 0.0024 8.3E-08 57.4 4.3 50 181-230 209-269 (467)
72 4b4t_M 26S protease regulatory 96.4 0.0027 9.4E-08 56.7 4.6 52 179-230 179-241 (434)
73 3t15_A Ribulose bisphosphate c 96.4 0.0022 7.4E-08 54.1 3.7 29 203-231 35-63 (293)
74 1ixz_A ATP-dependent metallopr 96.4 0.0016 5.5E-08 53.3 2.7 48 181-228 16-73 (254)
75 1qvr_A CLPB protein; coiled co 96.3 0.0028 9.6E-08 61.2 4.6 50 177-228 166-215 (854)
76 2x8a_A Nuclear valosin-contain 96.3 0.0034 1.1E-07 52.5 4.5 22 207-228 47-68 (274)
77 2ce7_A Cell division protein F 96.3 0.0033 1.1E-07 56.8 4.7 50 180-229 15-74 (476)
78 2c9o_A RUVB-like 1; hexameric 96.3 0.0035 1.2E-07 56.2 4.9 50 180-229 36-88 (456)
79 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0047 1.6E-07 58.7 5.9 49 178-228 183-231 (758)
80 1iy2_A ATP-dependent metallopr 96.3 0.0024 8.4E-08 53.1 3.5 49 180-228 39-97 (278)
81 2r44_A Uncharacterized protein 96.2 0.0029 9.8E-08 53.8 3.7 46 180-229 26-71 (331)
82 1um8_A ATP-dependent CLP prote 96.2 0.0037 1.3E-07 54.3 4.3 25 205-229 73-97 (376)
83 2kjq_A DNAA-related protein; s 96.1 0.003 1E-07 47.8 2.9 26 203-228 35-60 (149)
84 3hyn_A Putative signal transdu 96.1 0.015 5.2E-07 45.5 6.7 64 40-103 33-105 (189)
85 4b4t_I 26S protease regulatory 96.0 0.0058 2E-07 54.4 4.5 52 179-230 180-242 (437)
86 3nwj_A ATSK2; P loop, shikimat 95.9 0.0033 1.1E-07 52.0 2.5 26 204-229 48-73 (250)
87 2z4s_A Chromosomal replication 95.9 0.0062 2.1E-07 54.4 4.3 26 204-229 130-155 (440)
88 1htw_A HI0065; nucleotide-bind 95.8 0.011 3.9E-07 45.2 4.9 29 200-228 29-57 (158)
89 3e70_C DPA, signal recognition 95.7 0.013 4.4E-07 50.4 5.6 26 203-228 128-153 (328)
90 2dhr_A FTSH; AAA+ protein, hex 95.7 0.0056 1.9E-07 55.7 3.4 50 179-228 29-88 (499)
91 3aez_A Pantothenate kinase; tr 95.7 0.0087 3E-07 51.0 4.3 28 202-229 88-115 (312)
92 3cf2_A TER ATPase, transitiona 95.7 0.0062 2.1E-07 58.4 3.6 49 181-229 204-263 (806)
93 3p32_A Probable GTPase RV1496/ 95.7 0.015 5.2E-07 50.2 5.8 37 192-228 67-103 (355)
94 1tue_A Replication protein E1; 95.6 0.0099 3.4E-07 47.8 4.2 39 190-229 45-83 (212)
95 1zu4_A FTSY; GTPase, signal re 95.6 0.017 5.9E-07 49.3 5.7 26 203-228 104-129 (320)
96 1g8p_A Magnesium-chelatase 38 95.5 0.0073 2.5E-07 51.4 3.3 49 179-229 22-70 (350)
97 1gvn_B Zeta; postsegregational 95.5 0.0078 2.7E-07 50.6 3.4 26 203-228 32-57 (287)
98 1vma_A Cell division protein F 95.5 0.019 6.6E-07 48.8 5.7 27 203-229 103-129 (306)
99 3b9q_A Chloroplast SRP recepto 95.5 0.012 4.2E-07 49.9 4.4 27 203-229 99-125 (302)
100 1g41_A Heat shock protein HSLU 95.4 0.014 4.6E-07 52.3 4.8 50 181-230 15-76 (444)
101 2p5t_B PEZT; postsegregational 95.4 0.0073 2.5E-07 49.6 2.8 27 203-229 31-57 (253)
102 2f6r_A COA synthase, bifunctio 95.4 0.0088 3E-07 50.1 3.2 23 203-225 74-96 (281)
103 3fwy_A Light-independent proto 95.4 0.012 4.1E-07 50.2 4.1 26 202-227 46-71 (314)
104 1sq5_A Pantothenate kinase; P- 95.3 0.012 4.2E-07 49.8 4.0 27 203-229 79-105 (308)
105 1rj9_A FTSY, signal recognitio 95.3 0.013 4.4E-07 49.8 4.0 27 203-229 101-127 (304)
106 1puj_A YLQF, conserved hypothe 95.3 0.11 3.6E-06 43.5 9.5 29 67-95 13-41 (282)
107 3tqc_A Pantothenate kinase; bi 95.2 0.017 5.9E-07 49.4 4.5 28 202-229 90-117 (321)
108 1svm_A Large T antigen; AAA+ f 95.2 0.015 5.1E-07 50.9 4.2 29 200-228 165-193 (377)
109 3nbx_X ATPase RAVA; AAA+ ATPas 95.2 0.012 4.1E-07 53.4 3.6 44 181-228 22-65 (500)
110 2qgz_A Helicase loader, putati 95.2 0.017 5.9E-07 49.0 4.4 38 192-229 139-177 (308)
111 2xxa_A Signal recognition part 95.2 0.026 8.8E-07 50.3 5.7 27 203-229 99-125 (433)
112 2px0_A Flagellar biosynthesis 95.1 0.013 4.3E-07 49.6 3.4 26 204-229 105-130 (296)
113 2hf9_A Probable hydrogenase ni 95.1 0.02 6.9E-07 45.4 4.5 26 203-228 37-62 (226)
114 1pzn_A RAD51, DNA repair and r 95.1 0.016 5.4E-07 50.1 4.1 38 191-228 118-155 (349)
115 1cr0_A DNA primase/helicase; R 95.1 0.017 5.9E-07 48.2 4.2 26 203-228 34-59 (296)
116 1j8m_F SRP54, signal recogniti 95.1 0.024 8.1E-07 47.9 5.1 25 204-228 98-122 (297)
117 2og2_A Putative signal recogni 95.1 0.018 6E-07 50.2 4.3 27 203-229 156-182 (359)
118 3m6a_A ATP-dependent protease 95.1 0.016 5.5E-07 53.1 4.2 48 182-229 82-133 (543)
119 3k1j_A LON protease, ATP-depen 95.0 0.015 5.1E-07 54.0 3.9 44 181-228 41-84 (604)
120 2yhs_A FTSY, cell division pro 94.9 0.02 6.8E-07 51.9 4.3 26 203-228 292-317 (503)
121 3pxi_A Negative regulator of g 94.9 0.02 6.8E-07 54.4 4.5 48 181-228 491-545 (758)
122 3kl4_A SRP54, signal recogniti 94.9 0.027 9.3E-07 50.2 5.1 26 203-228 96-121 (433)
123 1u0j_A DNA replication protein 94.9 0.031 1.1E-06 46.6 5.0 37 191-227 91-127 (267)
124 2j37_W Signal recognition part 94.8 0.036 1.2E-06 50.4 5.6 26 203-228 100-125 (504)
125 3tif_A Uncharacterized ABC tra 94.7 0.017 5.9E-07 47.0 3.1 24 203-226 30-53 (235)
126 1r6b_X CLPA protein; AAA+, N-t 94.7 0.016 5.6E-07 54.9 3.4 49 181-229 458-513 (758)
127 2v3c_C SRP54, signal recogniti 94.7 0.024 8.1E-07 50.5 4.2 25 204-228 99-123 (432)
128 1ypw_A Transitional endoplasmi 94.6 0.017 5.7E-07 55.5 3.2 52 180-231 476-538 (806)
129 1ls1_A Signal recognition part 94.6 0.026 8.9E-07 47.6 4.0 26 203-228 97-122 (295)
130 2qm8_A GTPase/ATPase; G protei 94.6 0.042 1.5E-06 47.2 5.4 35 194-228 45-79 (337)
131 2v9p_A Replication protein E1; 94.6 0.029 9.9E-07 47.7 4.3 30 199-228 121-150 (305)
132 3end_A Light-independent proto 94.5 0.027 9.3E-07 47.2 4.0 26 203-228 40-65 (307)
133 3a8t_A Adenylate isopentenyltr 94.5 0.013 4.4E-07 50.6 1.9 26 204-229 40-65 (339)
134 3hr8_A Protein RECA; alpha and 94.5 0.031 1.1E-06 48.5 4.4 41 188-228 44-85 (356)
135 2p67_A LAO/AO transport system 94.5 0.045 1.5E-06 47.0 5.4 29 200-228 52-80 (341)
136 2cbz_A Multidrug resistance-as 94.5 0.021 7.2E-07 46.6 3.1 24 203-226 30-53 (237)
137 1b0u_A Histidine permease; ABC 94.5 0.021 7.2E-07 47.3 3.1 24 203-226 31-54 (262)
138 2zu0_C Probable ATP-dependent 94.5 0.023 7.8E-07 47.2 3.3 24 203-226 45-68 (267)
139 1g6h_A High-affinity branched- 94.4 0.022 7.5E-07 47.0 3.1 24 203-226 32-55 (257)
140 3gfo_A Cobalt import ATP-bindi 94.4 0.022 7.5E-07 47.6 3.1 23 204-226 34-56 (275)
141 4g1u_C Hemin import ATP-bindin 94.4 0.022 7.5E-07 47.3 3.1 24 203-226 36-59 (266)
142 1ji0_A ABC transporter; ATP bi 94.4 0.023 7.9E-07 46.4 3.1 23 204-226 32-54 (240)
143 2vhj_A Ntpase P4, P4; non- hyd 94.4 0.03 1E-06 48.0 3.9 24 204-227 123-146 (331)
144 2olj_A Amino acid ABC transpor 94.3 0.024 8.3E-07 47.1 3.1 24 203-226 49-72 (263)
145 2pze_A Cystic fibrosis transme 94.3 0.025 8.5E-07 45.8 3.1 24 204-227 34-57 (229)
146 3zvl_A Bifunctional polynucleo 94.3 0.02 6.9E-07 50.6 2.7 26 203-228 257-282 (416)
147 2hjg_A GTP-binding protein ENG 94.3 0.29 1E-05 43.2 10.3 24 203-226 174-197 (436)
148 2ff7_A Alpha-hemolysin translo 94.2 0.026 8.9E-07 46.3 3.1 24 203-226 34-57 (247)
149 2zr9_A Protein RECA, recombina 94.2 0.033 1.1E-06 48.2 3.9 43 186-228 42-85 (349)
150 1vpl_A ABC transporter, ATP-bi 94.2 0.027 9.2E-07 46.6 3.1 24 203-226 40-63 (256)
151 2ghi_A Transport protein; mult 94.2 0.027 9.2E-07 46.6 3.1 24 203-226 45-68 (260)
152 3bh0_A DNAB-like replicative h 94.2 0.064 2.2E-06 45.5 5.5 45 183-228 48-92 (315)
153 2axn_A 6-phosphofructo-2-kinas 94.2 0.035 1.2E-06 50.6 4.1 26 203-228 34-59 (520)
154 3lda_A DNA repair protein RAD5 94.1 0.028 9.7E-07 49.6 3.3 37 189-225 163-199 (400)
155 2ged_A SR-beta, signal recogni 94.1 0.031 1.1E-06 43.0 3.2 25 203-227 47-71 (193)
156 2yz2_A Putative ABC transporte 94.1 0.029 9.8E-07 46.6 3.1 24 203-226 32-55 (266)
157 1sgw_A Putative ABC transporte 94.1 0.024 8.1E-07 45.6 2.5 23 204-226 35-57 (214)
158 2ixe_A Antigen peptide transpo 94.1 0.029 1E-06 46.7 3.1 24 203-226 44-67 (271)
159 1bif_A 6-phosphofructo-2-kinas 94.0 0.039 1.3E-06 49.5 4.1 25 204-228 39-63 (469)
160 2ihy_A ABC transporter, ATP-bi 94.0 0.029 1E-06 46.9 3.1 23 204-226 47-69 (279)
161 3cr8_A Sulfate adenylyltranfer 94.0 0.031 1E-06 51.4 3.4 26 204-229 369-394 (552)
162 2nq2_C Hypothetical ABC transp 93.9 0.032 1.1E-06 46.0 3.1 23 204-226 31-53 (253)
163 3dm5_A SRP54, signal recogniti 93.9 0.047 1.6E-06 48.8 4.2 26 204-229 100-125 (443)
164 1lw7_A Transcriptional regulat 93.8 0.044 1.5E-06 47.4 3.9 25 204-228 170-194 (365)
165 1v5w_A DMC1, meiotic recombina 93.8 0.066 2.3E-06 46.0 4.9 38 190-227 108-145 (343)
166 1qvr_A CLPB protein; coiled co 93.7 0.035 1.2E-06 53.6 3.3 47 182-228 559-612 (854)
167 2ffh_A Protein (FFH); SRP54, s 93.5 0.06 2.1E-06 47.8 4.2 27 203-229 97-123 (425)
168 1m8p_A Sulfate adenylyltransfe 93.4 0.078 2.7E-06 48.9 5.0 26 204-229 396-421 (573)
169 1u94_A RECA protein, recombina 93.4 0.057 1.9E-06 46.8 3.9 44 185-228 43-87 (356)
170 1g8f_A Sulfate adenylyltransfe 93.4 0.076 2.6E-06 48.3 4.7 26 204-229 395-420 (511)
171 1x6v_B Bifunctional 3'-phospho 93.3 0.058 2E-06 50.3 4.0 25 204-228 52-76 (630)
172 2yv5_A YJEQ protein; hydrolase 93.3 0.066 2.3E-06 45.2 4.1 31 190-225 156-186 (302)
173 3nh6_A ATP-binding cassette SU 93.3 0.038 1.3E-06 46.9 2.5 24 203-226 79-102 (306)
174 2bbs_A Cystic fibrosis transme 93.3 0.048 1.6E-06 45.9 3.1 24 203-226 63-86 (290)
175 1tq4_A IIGP1, interferon-induc 93.3 0.039 1.3E-06 48.9 2.6 24 203-226 68-91 (413)
176 2www_A Methylmalonic aciduria 93.2 0.073 2.5E-06 45.9 4.3 25 203-227 73-97 (349)
177 2r6a_A DNAB helicase, replicat 93.2 0.097 3.3E-06 46.7 5.2 45 183-228 183-227 (454)
178 3tui_C Methionine import ATP-b 93.1 0.053 1.8E-06 47.2 3.3 24 203-226 53-76 (366)
179 1h65_A Chloroplast outer envel 93.1 0.092 3.2E-06 43.2 4.6 26 202-227 37-62 (270)
180 3def_A T7I23.11 protein; chlor 93.1 0.11 3.6E-06 42.7 4.9 24 203-226 35-58 (262)
181 2q6t_A DNAB replication FORK h 93.1 0.12 4E-06 46.0 5.5 45 183-228 180-224 (444)
182 2z43_A DNA repair and recombin 93.0 0.059 2E-06 45.8 3.3 39 190-228 93-131 (324)
183 2i1q_A DNA repair and recombin 93.0 0.074 2.5E-06 45.0 3.9 38 190-227 84-121 (322)
184 1z47_A CYSA, putative ABC-tran 92.9 0.06 2.1E-06 46.7 3.3 23 204-226 41-63 (355)
185 2ewv_A Twitching motility prot 92.8 0.083 2.8E-06 46.0 4.0 26 203-228 135-160 (372)
186 2qmh_A HPR kinase/phosphorylas 92.8 0.054 1.9E-06 43.2 2.6 24 204-227 34-57 (205)
187 3jvv_A Twitching mobility prot 92.7 0.082 2.8E-06 45.8 3.8 24 205-228 124-147 (356)
188 3fkq_A NTRC-like two-domain pr 92.7 0.11 3.7E-06 45.0 4.6 58 23-93 20-82 (373)
189 2gks_A Bifunctional SAT/APS ki 92.6 0.11 3.8E-06 47.6 4.8 26 204-229 372-397 (546)
190 2obl_A ESCN; ATPase, hydrolase 92.6 0.075 2.6E-06 45.9 3.4 26 203-228 70-95 (347)
191 1v43_A Sugar-binding transport 92.5 0.072 2.5E-06 46.5 3.3 24 203-226 36-59 (372)
192 2j1l_A RHO-related GTP-binding 92.4 0.074 2.5E-06 41.9 3.0 23 204-226 34-56 (214)
193 1oxx_K GLCV, glucose, ABC tran 92.3 0.054 1.8E-06 46.9 2.1 24 203-226 30-53 (353)
194 2gza_A Type IV secretion syste 92.3 0.056 1.9E-06 46.8 2.3 24 204-227 175-198 (361)
195 4a1f_A DNAB helicase, replicat 92.3 0.16 5.6E-06 43.6 5.2 46 182-228 25-70 (338)
196 3bgw_A DNAB-like replicative h 92.3 0.16 5.3E-06 45.3 5.2 45 183-228 177-221 (444)
197 1tf7_A KAIC; homohexamer, hexa 92.3 0.11 3.9E-06 47.1 4.3 38 191-228 268-305 (525)
198 3gd7_A Fusion complex of cysti 92.2 0.085 2.9E-06 46.3 3.2 24 203-226 46-69 (390)
199 1u0l_A Probable GTPase ENGC; p 92.1 0.12 4E-06 43.5 3.9 32 190-226 160-191 (301)
200 2npi_A Protein CLP1; CLP1-PCF1 92.1 0.075 2.6E-06 47.7 2.8 25 203-227 137-161 (460)
201 1yqt_A RNAse L inhibitor; ATP- 92.0 0.087 3E-06 48.2 3.3 24 204-227 312-335 (538)
202 3upu_A ATP-dependent DNA helic 92.0 0.09 3.1E-06 46.9 3.3 23 206-228 47-69 (459)
203 2rcn_A Probable GTPase ENGC; Y 91.9 0.095 3.3E-06 45.5 3.3 22 205-226 216-237 (358)
204 2g3y_A GTP-binding protein GEM 91.9 0.094 3.2E-06 41.7 3.0 22 204-225 37-58 (211)
205 2qag_B Septin-6, protein NEDD5 91.8 0.083 2.8E-06 46.9 2.8 21 206-226 44-64 (427)
206 1p9r_A General secretion pathw 91.8 0.12 4.1E-06 45.7 3.8 26 203-228 166-191 (418)
207 2dpy_A FLII, flagellum-specifi 91.7 0.14 4.8E-06 45.6 4.2 27 202-228 155-181 (438)
208 3ozx_A RNAse L inhibitor; ATP 91.7 0.082 2.8E-06 48.4 2.7 24 204-227 294-317 (538)
209 3ez2_A Plasmid partition prote 91.7 0.23 7.7E-06 43.3 5.5 28 202-229 106-134 (398)
210 1yqt_A RNAse L inhibitor; ATP- 91.6 0.1 3.5E-06 47.7 3.3 25 203-227 46-70 (538)
211 3cf2_A TER ATPase, transitiona 91.5 0.072 2.5E-06 51.1 2.2 49 181-229 477-536 (806)
212 3bk7_A ABC transporter ATP-bin 91.4 0.11 3.8E-06 48.2 3.3 24 204-227 382-405 (607)
213 1f2t_A RAD50 ABC-ATPase; DNA d 91.3 0.16 5.3E-06 38.1 3.5 23 205-227 24-46 (149)
214 2pt7_A CAG-ALFA; ATPase, prote 91.3 0.079 2.7E-06 45.3 2.0 24 204-227 171-194 (330)
215 1xp8_A RECA protein, recombina 91.2 0.16 5.4E-06 44.2 3.9 44 185-228 54-98 (366)
216 3j16_B RLI1P; ribosome recycli 91.2 0.12 4.1E-06 48.0 3.3 23 205-227 379-401 (608)
217 1t9h_A YLOQ, probable GTPase E 91.0 0.064 2.2E-06 45.6 1.2 22 205-226 174-195 (307)
218 2oze_A ORF delta'; para, walke 91.0 0.12 3.9E-06 43.0 2.8 25 204-228 34-61 (298)
219 3f9v_A Minichromosome maintena 91.0 0.057 1.9E-06 50.0 0.9 48 180-227 294-350 (595)
220 4dcu_A GTP-binding protein ENG 91.0 1.4 4.7E-05 39.1 10.0 24 203-226 194-217 (456)
221 3j16_B RLI1P; ribosome recycli 90.9 0.13 4.6E-06 47.7 3.3 25 203-227 102-126 (608)
222 2qag_C Septin-7; cell cycle, c 90.9 0.11 3.7E-06 46.1 2.5 21 207-227 34-54 (418)
223 3e1s_A Exodeoxyribonuclease V, 90.5 0.22 7.6E-06 45.9 4.4 24 205-228 205-228 (574)
224 3cio_A ETK, tyrosine-protein k 90.5 0.29 1E-05 41.1 4.8 27 202-228 102-129 (299)
225 3bk7_A ABC transporter ATP-bin 90.4 0.14 4.9E-06 47.5 3.1 25 203-227 116-140 (607)
226 1tf7_A KAIC; homohexamer, hexa 90.4 0.15 5E-06 46.4 3.1 22 203-224 38-59 (525)
227 2qtf_A Protein HFLX, GTP-bindi 90.3 0.16 5.3E-06 44.1 3.0 24 203-226 178-201 (364)
228 3cnl_A YLQF, putative uncharac 90.2 0.29 9.9E-06 40.3 4.4 35 190-227 88-122 (262)
229 2qag_A Septin-2, protein NEDD5 90.0 0.12 4.1E-06 44.7 2.1 21 206-226 39-59 (361)
230 1sky_E F1-ATPase, F1-ATP synth 89.9 0.19 6.6E-06 45.2 3.3 24 206-229 153-176 (473)
231 1q57_A DNA primase/helicase; d 89.9 0.23 7.9E-06 44.7 3.9 38 190-228 229-266 (503)
232 3b5x_A Lipid A export ATP-bind 89.7 0.18 6.2E-06 46.4 3.1 25 203-227 368-392 (582)
233 3b60_A Lipid A export ATP-bind 89.7 0.18 6.2E-06 46.4 3.0 23 204-226 369-391 (582)
234 3bfv_A CAPA1, CAPB2, membrane 89.6 0.4 1.4E-05 39.6 4.9 27 202-228 80-107 (271)
235 2e87_A Hypothetical protein PH 89.6 0.2 6.8E-06 43.1 3.1 24 203-226 166-189 (357)
236 2oap_1 GSPE-2, type II secreti 89.1 0.2 6.7E-06 45.6 2.8 24 205-228 261-284 (511)
237 2wkq_A NPH1-1, RAS-related C3 89.1 0.28 9.4E-06 40.9 3.6 24 204-227 155-178 (332)
238 1mky_A Probable GTP-binding pr 88.8 0.47 1.6E-05 41.9 5.0 25 203-227 179-203 (439)
239 3ice_A Transcription terminati 88.8 0.29 9.9E-06 43.1 3.5 25 204-228 174-198 (422)
240 2yl4_A ATP-binding cassette SU 88.6 0.19 6.4E-06 46.4 2.3 23 204-226 370-392 (595)
241 3qf4_B Uncharacterized ABC tra 88.3 0.21 7.1E-06 46.2 2.5 24 203-226 380-403 (598)
242 1of1_A Thymidine kinase; trans 88.2 0.25 8.6E-06 43.1 2.8 27 203-229 48-74 (376)
243 1f5n_A Interferon-induced guan 88.2 0.5 1.7E-05 43.7 4.9 30 197-226 31-60 (592)
244 1udx_A The GTP-binding protein 88.0 0.21 7.1E-06 44.2 2.1 23 204-226 157-179 (416)
245 1ny5_A Transcriptional regulat 88.0 0.38 1.3E-05 41.9 3.8 46 181-227 137-183 (387)
246 4a82_A Cystic fibrosis transme 87.6 0.18 6.2E-06 46.4 1.6 23 204-226 367-389 (578)
247 3o47_A ADP-ribosylation factor 87.6 0.25 8.5E-06 42.1 2.3 21 205-225 166-186 (329)
248 2iw3_A Elongation factor 3A; a 87.4 0.33 1.1E-05 47.6 3.3 23 204-226 461-483 (986)
249 3qf4_A ABC transporter, ATP-bi 87.4 0.22 7.7E-06 45.9 2.1 23 204-226 369-391 (587)
250 4aby_A DNA repair protein RECN 87.3 0.15 5.2E-06 44.4 0.8 22 206-227 62-83 (415)
251 1zcb_A G alpha I/13; GTP-bindi 87.2 0.33 1.1E-05 42.1 2.9 21 204-224 33-53 (362)
252 3q5d_A Atlastin-1; G protein, 87.0 0.83 2.8E-05 40.7 5.4 38 190-227 50-90 (447)
253 1w36_D RECD, exodeoxyribonucle 86.9 0.64 2.2E-05 43.0 4.8 37 187-228 152-188 (608)
254 3dpu_A RAB family protein; roc 86.3 0.37 1.3E-05 43.7 2.8 23 204-226 41-63 (535)
255 3ez9_A Para; DNA binding, wing 86.2 0.3 1E-05 42.6 2.1 28 202-229 109-137 (403)
256 3dzd_A Transcriptional regulat 86.1 0.42 1.4E-05 41.3 3.0 47 181-227 129-175 (368)
257 1ko7_A HPR kinase/phosphatase; 85.7 0.52 1.8E-05 40.1 3.3 23 205-227 145-167 (314)
258 3szr_A Interferon-induced GTP- 85.6 0.45 1.5E-05 44.1 3.1 24 203-226 44-67 (608)
259 3l0i_B RAS-related protein RAB 85.4 0.091 3.1E-06 40.7 -1.5 24 202-225 31-54 (199)
260 2iw3_A Elongation factor 3A; a 85.3 0.33 1.1E-05 47.5 2.1 23 204-226 699-721 (986)
261 3ec1_A YQEH GTPase; atnos1, at 84.8 0.63 2.1E-05 40.3 3.5 39 184-227 147-185 (369)
262 2gk6_A Regulator of nonsense t 84.5 0.85 2.9E-05 42.3 4.4 36 188-228 184-219 (624)
263 3cmu_A Protein RECA, recombina 84.1 0.74 2.5E-05 48.4 4.1 38 190-227 1412-1450(2050)
264 3geh_A MNME, tRNA modification 84.0 0.65 2.2E-05 41.5 3.3 22 206-227 226-247 (462)
265 3g5u_A MCG1178, multidrug resi 84.0 0.51 1.7E-05 47.6 2.8 24 203-226 1058-1081(1284)
266 3t34_A Dynamin-related protein 84.0 0.56 1.9E-05 40.2 2.8 24 203-226 33-56 (360)
267 3l0o_A Transcription terminati 83.9 0.73 2.5E-05 40.6 3.5 26 204-229 175-200 (427)
268 1lnz_A SPO0B-associated GTP-bi 83.8 0.46 1.6E-05 40.8 2.2 23 204-226 158-180 (342)
269 4ido_A Atlastin-1; GTPase, GTP 83.6 1.8 6.3E-05 38.6 6.0 41 188-228 48-91 (457)
270 3ux8_A Excinuclease ABC, A sub 83.5 0.38 1.3E-05 45.0 1.6 21 204-224 348-368 (670)
271 3vkw_A Replicase large subunit 82.9 1.1 3.9E-05 39.8 4.4 25 202-226 159-183 (446)
272 4b3f_X DNA-binding protein smu 82.9 1.1 3.6E-05 41.7 4.4 35 188-226 193-228 (646)
273 1ewq_A DNA mismatch repair pro 82.7 0.69 2.4E-05 44.1 3.1 23 204-226 576-598 (765)
274 3h2y_A GTPase family protein; 82.6 0.83 2.8E-05 39.5 3.3 39 184-227 145-183 (368)
275 3cmw_A Protein RECA, recombina 82.5 0.88 3E-05 47.1 3.9 46 183-228 710-756 (1706)
276 4ag6_A VIRB4 ATPase, type IV s 82.4 0.98 3.4E-05 39.0 3.7 23 206-228 37-59 (392)
277 2qpt_A EH domain-containing pr 82.0 0.72 2.4E-05 42.2 2.8 25 203-227 64-88 (550)
278 1wb9_A DNA mismatch repair pro 81.9 0.77 2.6E-05 44.0 3.1 24 203-226 606-629 (800)
279 3ux8_A Excinuclease ABC, A sub 81.8 0.64 2.2E-05 43.4 2.4 18 204-221 44-61 (670)
280 3lvq_E ARF-GAP with SH3 domain 81.5 0.9 3.1E-05 40.6 3.2 23 204-226 322-344 (497)
281 1knx_A Probable HPR(Ser) kinas 81.4 0.69 2.4E-05 39.3 2.3 22 205-226 148-169 (312)
282 2f62_A Nucleoside 2-deoxyribos 81.1 5.2 0.00018 30.4 7.0 67 38-105 26-97 (161)
283 4f4c_A Multidrug resistance pr 81.0 0.44 1.5E-05 48.2 1.1 23 204-226 1105-1127(1321)
284 3cmu_A Protein RECA, recombina 81.0 1.2 4E-05 46.9 4.2 47 182-228 360-407 (2050)
285 2wjy_A Regulator of nonsense t 80.6 1.4 4.8E-05 42.2 4.4 36 188-228 360-395 (800)
286 2j69_A Bacterial dynamin-like 80.3 1.1 3.7E-05 42.2 3.4 24 203-226 68-91 (695)
287 2x2e_A Dynamin-1; nitration, h 80.2 0.65 2.2E-05 39.7 1.7 24 203-226 30-53 (353)
288 3g5u_A MCG1178, multidrug resi 79.9 0.81 2.8E-05 46.2 2.6 23 204-226 416-438 (1284)
289 2ck3_D ATP synthase subunit be 79.6 1.3 4.3E-05 39.9 3.4 25 204-228 153-177 (482)
290 3cmw_A Protein RECA, recombina 79.3 1.3 4.3E-05 45.9 3.8 45 184-228 362-407 (1706)
291 3la6_A Tyrosine-protein kinase 79.1 3.5 0.00012 34.1 6.0 27 202-228 90-117 (286)
292 4f4c_A Multidrug resistance pr 78.9 1 3.6E-05 45.5 3.0 23 204-226 444-466 (1321)
293 3vqt_A RF-3, peptide chain rel 78.7 1.4 4.8E-05 40.2 3.6 23 203-225 30-52 (548)
294 2ygr_A Uvrabc system protein A 78.7 0.69 2.4E-05 45.3 1.6 20 205-224 669-688 (993)
295 1fx0_B ATP synthase beta chain 78.7 1.4 4.7E-05 39.8 3.4 26 204-229 165-190 (498)
296 2vf7_A UVRA2, excinuclease ABC 78.2 0.65 2.2E-05 44.8 1.2 22 205-226 524-546 (842)
297 3thx_B DNA mismatch repair pro 78.1 1.1 3.7E-05 43.7 2.7 24 203-226 672-695 (918)
298 2xzl_A ATP-dependent helicase 77.9 2 6.7E-05 41.2 4.5 35 188-227 364-398 (802)
299 3llm_A ATP-dependent RNA helic 77.9 1.3 4.4E-05 35.3 2.7 20 205-224 77-96 (235)
300 3gee_A MNME, tRNA modification 77.6 0.95 3.3E-05 40.6 2.1 22 206-227 235-256 (476)
301 3thx_A DNA mismatch repair pro 77.3 1.2 4.2E-05 43.3 2.9 22 203-224 661-682 (934)
302 3mca_A HBS1, elongation factor 76.8 2.8 9.6E-05 38.6 5.1 25 202-226 175-199 (592)
303 2r6f_A Excinuclease ABC subuni 76.3 0.64 2.2E-05 45.4 0.6 20 205-224 651-670 (972)
304 2o8b_B DNA mismatch repair pro 76.2 1.4 4.9E-05 43.3 3.0 21 204-224 789-809 (1022)
305 4a9a_A Ribosome-interacting GT 75.5 1.6 5.6E-05 37.9 3.0 24 203-226 71-94 (376)
306 3p26_A Elongation factor 1 alp 75.2 1.5 5.2E-05 39.2 2.7 25 203-227 32-56 (483)
307 1ihu_A Arsenical pump-driving 73.8 2.6 9E-05 38.5 4.0 25 204-228 327-351 (589)
308 1xzp_A Probable tRNA modificat 73.6 0.86 2.9E-05 41.0 0.7 23 205-227 244-266 (482)
309 3izq_1 HBS1P, elongation facto 72.6 1.9 6.7E-05 39.8 2.8 22 204-225 167-188 (611)
310 2fz4_A DNA repair protein RAD2 71.9 5.9 0.0002 31.6 5.3 37 186-227 95-131 (237)
311 3pih_A Uvrabc system protein A 70.1 2.2 7.4E-05 41.5 2.6 18 205-222 611-628 (916)
312 3vr4_A V-type sodium ATPase ca 69.9 3 0.0001 38.4 3.3 24 204-227 232-255 (600)
313 2khz_A C-MYC-responsive protei 69.6 16 0.00055 27.5 7.1 81 21-105 8-102 (165)
314 3gqb_B V-type ATP synthase bet 69.6 1.8 6.1E-05 38.7 1.8 24 205-228 148-171 (464)
315 3vr4_D V-type sodium ATPase su 69.5 2.1 7E-05 38.3 2.1 24 205-228 152-175 (465)
316 3gqb_A V-type ATP synthase alp 68.7 2.9 9.7E-05 38.4 2.9 24 204-227 221-244 (578)
317 2c61_A A-type ATP synthase non 68.4 2.2 7.6E-05 38.2 2.1 24 205-228 153-176 (469)
318 1r5b_A Eukaryotic peptide chai 68.4 3.3 0.00011 36.8 3.3 25 202-226 41-65 (467)
319 3czq_A Putative polyphosphate 68.4 3.6 0.00012 34.7 3.3 26 204-229 86-111 (304)
320 4ad8_A DNA repair protein RECN 68.3 1.4 4.8E-05 39.7 0.8 21 206-226 62-82 (517)
321 3qq5_A Small GTP-binding prote 68.0 0.92 3.2E-05 40.1 -0.4 25 202-226 32-56 (423)
322 3mfy_A V-type ATP synthase alp 67.2 2.6 9.1E-05 38.6 2.4 24 204-227 227-250 (588)
323 1e9r_A Conjugal transfer prote 66.1 4.2 0.00014 35.5 3.5 23 205-227 54-76 (437)
324 2yvq_A Carbamoyl-phosphate syn 65.6 7.2 0.00024 28.8 4.2 62 27-90 27-107 (143)
325 4akg_A Glutathione S-transfera 63.9 3.8 0.00013 44.4 3.1 25 206-230 647-671 (2695)
326 2vf7_A UVRA2, excinuclease ABC 63.0 3.2 0.00011 39.9 2.2 20 204-223 36-55 (842)
327 3ehd_A Uncharacterized conserv 62.4 41 0.0014 25.3 8.0 67 38-105 19-96 (162)
328 3czp_A Putative polyphosphate 62.3 7.3 0.00025 35.1 4.3 41 190-230 29-69 (500)
329 1ii2_A Phosphoenolpyruvate car 61.3 4.2 0.00014 36.9 2.6 19 204-222 213-231 (524)
330 1ytm_A Phosphoenolpyruvate car 61.1 4.3 0.00015 36.9 2.6 18 205-222 236-253 (532)
331 2olr_A Phosphoenolpyruvate car 60.2 4.6 0.00016 36.7 2.6 18 205-222 242-259 (540)
332 2ius_A DNA translocase FTSK; n 60.0 5 0.00017 36.3 2.9 23 205-227 168-190 (512)
333 1cip_A Protein (guanine nucleo 59.7 5.4 0.00018 34.2 2.9 20 204-223 32-51 (353)
334 4fyk_A Deoxyribonucleoside 5'- 59.2 30 0.001 25.8 6.7 64 38-105 18-93 (152)
335 4akg_A Glutathione S-transfera 59.0 5.3 0.00018 43.3 3.2 23 205-227 1268-1290(2695)
336 2ygr_A Uvrabc system protein A 58.5 4.2 0.00015 39.8 2.2 19 205-223 47-65 (993)
337 2r6f_A Excinuclease ABC subuni 58.4 4.3 0.00015 39.7 2.2 19 205-223 45-63 (972)
338 2xau_A PRE-mRNA-splicing facto 58.2 7 0.00024 37.1 3.6 33 188-224 97-129 (773)
339 1azs_C GS-alpha; complex (lyas 57.9 7.9 0.00027 33.8 3.7 21 204-224 40-60 (402)
340 1j3b_A ATP-dependent phosphoen 57.9 4.3 0.00015 36.9 2.0 19 205-223 226-244 (529)
341 3f8t_A Predicted ATPase involv 56.7 5 0.00017 36.1 2.2 43 183-226 215-260 (506)
342 2ck3_A ATP synthase subunit al 55.7 5.8 0.0002 35.9 2.4 38 190-229 150-188 (510)
343 2r9v_A ATP synthase subunit al 54.0 5.3 0.00018 36.2 1.9 23 205-227 176-199 (515)
344 2qe7_A ATP synthase subunit al 53.9 5.2 0.00018 36.1 1.9 24 204-227 162-186 (502)
345 4ehx_A Tetraacyldisaccharide 4 52.4 11 0.00038 31.7 3.6 27 204-230 38-64 (315)
346 3avx_A Elongation factor TS, e 51.6 13 0.00044 37.4 4.3 25 203-227 295-319 (1289)
347 1w78_A FOLC bifunctional prote 49.1 25 0.00084 30.5 5.5 39 189-229 34-72 (422)
348 3zvr_A Dynamin-1; hydrolase, D 48.9 15 0.0005 35.1 4.1 24 203-226 50-73 (772)
349 1fx0_A ATP synthase alpha chai 48.8 6.4 0.00022 35.6 1.6 24 204-227 163-187 (507)
350 3b6e_A Interferon-induced heli 46.0 11 0.00037 28.7 2.4 20 207-226 51-70 (216)
351 3vkg_A Dynein heavy chain, cyt 45.5 20 0.00068 39.7 4.9 18 209-226 1651-1668(3245)
352 3vkg_A Dynein heavy chain, cyt 43.4 13 0.00043 41.2 3.0 24 205-228 907-930 (3245)
353 3oaa_A ATP synthase subunit al 43.1 9.3 0.00032 34.5 1.7 36 190-227 150-186 (513)
354 3nrs_A Dihydrofolate:folylpoly 42.5 32 0.0011 30.0 5.1 38 189-228 37-74 (437)
355 3rhf_A Putative polyphosphate 41.8 23 0.00078 29.5 3.8 26 204-229 75-100 (289)
356 3net_A Histidyl-tRNA synthetas 41.7 56 0.0019 28.8 6.6 62 22-87 369-430 (465)
357 2iut_A DNA translocase FTSK; n 41.0 19 0.00066 33.0 3.5 23 206-228 216-238 (574)
358 1lkx_A Myosin IE heavy chain; 39.4 24 0.00083 33.1 4.0 24 204-227 94-117 (697)
359 1w9i_A Myosin II heavy chain; 37.4 24 0.00084 33.5 3.7 24 204-227 172-195 (770)
360 3lc0_A Histidyl-tRNA synthetas 37.2 64 0.0022 28.4 6.2 61 22-86 359-419 (456)
361 1evl_A Threonyl-tRNA synthetas 37.0 77 0.0026 27.1 6.7 60 23-86 297-356 (401)
362 1v95_A Nuclear receptor coacti 36.1 90 0.0031 22.6 5.8 49 37-86 20-68 (130)
363 3czp_A Putative polyphosphate 35.9 26 0.00089 31.5 3.5 100 24-124 41-160 (500)
364 1jbw_A Folylpolyglutamate synt 35.6 34 0.0012 29.6 4.2 39 189-229 24-62 (428)
365 2v26_A Myosin VI; calmodulin-b 35.5 30 0.001 33.0 4.0 24 204-227 140-163 (784)
366 1sc3_B Interleukin-1 beta conv 35.5 10 0.00034 25.6 0.6 26 28-53 21-46 (88)
367 1byr_A Protein (endonuclease); 35.4 86 0.003 22.3 5.9 27 63-89 11-37 (155)
368 4a0g_A Adenosylmethionine-8-am 35.1 28 0.00095 33.4 3.7 27 204-230 34-61 (831)
369 4db1_A Myosin-7; S1DC, cardiac 34.9 31 0.0011 32.8 4.0 24 204-227 171-194 (783)
370 4anj_A Unconventional myosin-V 34.5 31 0.0011 34.0 4.0 24 204-227 144-167 (1052)
371 1w7j_A Myosin VA; motor protei 34.4 32 0.0011 32.8 4.0 24 204-227 156-179 (795)
372 2jug_A TUBC protein; docking d 34.3 28 0.00097 22.5 2.7 38 41-78 7-48 (78)
373 1kk8_A Myosin heavy chain, str 33.8 30 0.001 33.2 3.7 25 203-227 168-192 (837)
374 4g85_A Histidine-tRNA ligase, 33.5 99 0.0034 27.5 7.0 63 21-86 416-478 (517)
375 4g84_A Histidine--tRNA ligase, 33.4 90 0.0031 27.1 6.6 63 21-86 363-425 (464)
376 1kjw_A Postsynaptic density pr 33.2 19 0.00066 29.8 2.1 22 204-228 105-126 (295)
377 1o5z_A Folylpolyglutamate synt 33.1 47 0.0016 29.0 4.7 38 189-228 37-74 (442)
378 1g8x_A Myosin II heavy chain f 32.3 31 0.0011 33.8 3.6 24 204-227 172-195 (1010)
379 2fwr_A DNA repair protein RAD2 32.2 45 0.0015 28.8 4.4 37 186-227 95-131 (472)
380 2vos_A Folylpolyglutamate synt 31.8 42 0.0014 29.8 4.2 38 189-228 49-86 (487)
381 1htt_A Histidyl-tRNA synthetas 31.7 74 0.0025 27.3 5.7 61 22-86 325-387 (423)
382 2ycu_A Non muscle myosin 2C, a 31.6 36 0.0012 33.4 3.9 24 204-227 146-169 (995)
383 1s2d_A Purine trans deoxyribos 31.2 69 0.0023 24.1 4.7 67 38-105 22-108 (167)
384 1qde_A EIF4A, translation init 31.1 60 0.0021 24.6 4.6 21 207-227 54-75 (224)
385 1wu7_A Histidyl-tRNA synthetas 30.3 1.1E+02 0.0037 26.4 6.6 59 24-86 332-390 (434)
386 2ql9_B Caspase-7; cysteine pro 30.3 12 0.00041 25.6 0.3 30 23-52 9-47 (97)
387 2gxq_A Heat resistant RNA depe 30.0 27 0.00092 26.2 2.3 21 207-227 41-62 (207)
388 2dfs_A Myosin-5A; myosin-V, in 28.7 44 0.0015 33.1 4.0 25 204-228 156-180 (1080)
389 1qtn_B Caspase-8; apoptosis, d 28.6 12 0.0004 25.6 -0.0 31 22-52 10-49 (95)
390 2i4l_A Proline-tRNA ligase; al 28.6 1E+02 0.0035 27.0 6.1 60 24-86 365-426 (458)
391 3h1t_A Type I site-specific re 28.5 38 0.0013 30.5 3.3 46 183-228 177-222 (590)
392 4e51_A Histidine--tRNA ligase; 28.1 99 0.0034 27.2 5.9 63 23-86 353-416 (467)
393 1qe0_A Histidyl-tRNA synthetas 28.1 78 0.0027 27.1 5.2 61 22-86 327-387 (420)
394 1rif_A DAR protein, DNA helica 27.9 31 0.0011 27.7 2.4 34 188-226 117-150 (282)
395 3ikl_A DNA polymerase subunit 27.5 1.5E+02 0.0052 26.2 6.9 54 35-90 361-416 (459)
396 1t6n_A Probable ATP-dependent 27.4 73 0.0025 24.1 4.5 17 207-223 54-70 (220)
397 1hv8_A Putative ATP-dependent 27.3 57 0.0019 26.6 4.0 19 206-224 46-64 (367)
398 2dko_B Caspase-3; low barrier 27.2 15 0.0005 25.5 0.3 32 21-52 13-53 (103)
399 1pyo_B Caspase-2; apoptosis, c 26.6 15 0.00053 25.5 0.3 29 24-52 14-51 (105)
400 3rc3_A ATP-dependent RNA helic 25.9 37 0.0013 31.7 2.8 20 204-223 155-174 (677)
401 3aon_B V-type sodium ATPase su 25.6 72 0.0025 22.5 3.7 63 46-121 15-77 (115)
402 2oca_A DAR protein, ATP-depend 24.7 63 0.0022 28.2 4.0 35 187-226 116-150 (510)
403 2pl3_A Probable ATP-dependent 22.8 43 0.0015 25.8 2.3 16 207-222 65-80 (236)
404 3hjn_A DTMP kinase, thymidylat 22.6 1.4E+02 0.0046 22.7 5.2 49 28-77 2-52 (197)
405 1vec_A ATP-dependent RNA helic 22.4 41 0.0014 25.2 2.1 16 207-222 43-58 (206)
406 2j3l_A Prolyl-tRNA synthetase; 22.3 1.8E+02 0.006 26.2 6.6 62 24-88 470-533 (572)
407 2xzd_B Caspase-3; hydrolase-pr 22.2 24 0.00081 25.2 0.6 30 23-52 14-52 (118)
408 1i84_S Smooth muscle myosin he 21.7 41 0.0014 33.5 2.4 24 204-227 169-192 (1184)
409 1s2m_A Putative ATP-dependent 21.2 97 0.0033 25.7 4.4 17 207-223 61-77 (400)
410 3tvt_A Disks large 1 tumor sup 21.2 45 0.0015 27.6 2.1 25 203-230 99-123 (292)
411 1nj1_A PROR, proline-tRNA synt 21.2 57 0.002 29.1 3.0 64 19-86 309-377 (501)
412 3bor_A Human initiation factor 20.9 60 0.0021 25.2 2.8 16 207-222 70-85 (237)
413 2va8_A SSO2462, SKI2-type heli 20.9 56 0.0019 30.2 3.0 23 205-227 47-70 (715)
414 2d00_A V-type ATP synthase sub 20.7 2.1E+02 0.0073 19.6 6.9 66 45-121 15-80 (109)
415 2z0m_A 337AA long hypothetical 20.5 64 0.0022 25.9 3.0 17 207-223 34-50 (337)
416 3kb6_A D-lactate dehydrogenase 20.4 35 0.0012 28.8 1.4 17 204-220 141-157 (334)
417 2pw6_A Uncharacterized protein 20.1 1.4E+02 0.0048 24.2 5.0 69 38-108 95-164 (271)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2.3e-47 Score=307.87 Aligned_cols=154 Identities=40% Similarity=0.673 Sum_probs=141.4
Q ss_pred CCCCcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHH
Q 043980 20 RNNKKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDE 98 (233)
Q Consensus 20 ~~~~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~E 98 (233)
++.++|||||||+++|+++.|++||+.+|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||++|
T Consensus 31 ~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E 110 (204)
T 3ozi_A 31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME 110 (204)
T ss_dssp ---CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred CCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHH
Confidence 3889999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc-ccceeeceeeeecCCccccCCCchhhhhhHHHH-hHHHHHHHHhhhccc-----cccccchh---hHHH
Q 043980 99 LVKILECKKE-YAQIVIPVLYRVDPSDVRNQTGSFGDSFSKLEE-FKEAAELEECFEGSS-----QFVWLSFS---EHQR 168 (233)
Q Consensus 99 l~~~~~~~~~-~~~~viPIf~~v~~~~vr~~~g~~~~~f~~~e~-~~~~~e~~~~W~~AL-----~~g~~~~~---e~~~ 168 (233)
|.+|+++.+. .+++|+||||+++|++||+|+|.||++|.+|+. +.. +++++|+.|| ++||++.+ |. +
T Consensus 111 L~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~--~~v~~Wr~AL~~va~lsG~~~~~~~~e~-~ 187 (204)
T 3ozi_A 111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKNDKQG-A 187 (204)
T ss_dssp HHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH--HHHHHHHHHHHHHHTSCBEEECTTSCHH-H
T ss_pred HHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCH--HHHHHHHHHHHHHhccCceecCCCCCHH-H
Confidence 9999999854 578999999999999999999999999999988 543 5799999999 89999886 77 8
Q ss_pred hhhhhccC
Q 043980 169 LLDEVFRP 176 (233)
Q Consensus 169 ~i~~Iv~~ 176 (233)
++++|+.+
T Consensus 188 ~i~~Iv~d 195 (204)
T 3ozi_A 188 IADKVSAD 195 (204)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89998854
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=5.5e-46 Score=295.06 Aligned_cols=154 Identities=39% Similarity=0.637 Sum_probs=130.1
Q ss_pred CCCcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHHH
Q 043980 21 NNKKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDEL 99 (233)
Q Consensus 21 ~~~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El 99 (233)
..++|||||||+|+|+++.|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 678999999999999998999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccceeeceeeeecCCccccCCCchhhhhhHHHHhHHHHHHHHhhhccc-----cccccchh-hHHHhhhhh
Q 043980 100 VKILECKKEYAQIVIPVLYRVDPSDVRNQTGSFGDSFSKLEEFKEAAELEECFEGSS-----QFVWLSFS-EHQRLLDEV 173 (233)
Q Consensus 100 ~~~~~~~~~~~~~viPIf~~v~~~~vr~~~g~~~~~f~~~e~~~~~~e~~~~W~~AL-----~~g~~~~~-e~~~~i~~I 173 (233)
.+++++.+..+++|+||||+++|++||+|+|.||++|.+|+.. ...+++++|+.|| ++||++.+ |+ ++|++|
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~-~~~~~~~~Wr~AL~~va~~~G~~~~~~e~-~~i~~I 162 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR-EDPEKVLKWRQALTNFAQLSGDCSGDDDS-KLVDKI 162 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT-SCHHHHHHHHHHHHHHTTSCCEECCSCHH-HHHHHH
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc-cCHHHHHHHHHHHHHHhcccceecCCCHH-HHHHHH
Confidence 9999999888899999999999999999999999999999873 3446899999999 88999865 99 999999
Q ss_pred ccC
Q 043980 174 FRP 176 (233)
Q Consensus 174 v~~ 176 (233)
|.+
T Consensus 163 v~~ 165 (176)
T 3jrn_A 163 ANE 165 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=5e-33 Score=217.64 Aligned_cols=119 Identities=18% Similarity=0.379 Sum_probs=110.3
Q ss_pred CCCCcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHH
Q 043980 20 RNNKKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDE 98 (233)
Q Consensus 20 ~~~~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~E 98 (233)
++.++|||||||+++| +..|+.+|+.+|+++|+++|+|. ++.+|+.+.++|.++|++|+++|+|+|++|+.|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 5789999999999999 55799999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccceeeceeeeecCCccccCCCchhhhhhHH
Q 043980 99 LVKILECKKEYAQIVIPVLYRVDPSDVRNQTGSFGDSFSKL 139 (233)
Q Consensus 99 l~~~~~~~~~~~~~viPIf~~v~~~~vr~~~g~~~~~f~~~ 139 (233)
+..++++....+.+|+||||+++|++|+++.+.|++.|...
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 99999887667778999999999999999999999877643
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.94 E-value=5.3e-29 Score=192.91 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=95.4
Q ss_pred CCCCcceEEEcCcccccccchHHHHHHHHhh--CCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhH
Q 043980 20 RNNKKYEVFVSFRGEDTRDKFTSHLYSALSR--QSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCV 96 (233)
Q Consensus 20 ~~~~~~dVFISy~~~D~~~~f~~~L~~~L~~--~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~ 96 (233)
...+.|||||||+++|. .|+.+|+++|+. .|+++|+|+ |+.+|+.+.++|.++|++|+++|+|+|+||++|.||.
T Consensus 6 r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~ 83 (146)
T 3ub2_A 6 RWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCK 83 (146)
T ss_dssp TTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHH
T ss_pred CCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHH
Confidence 46789999999999994 579999999998 599999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccceeeceeeeecCCccccCCCch-hhhhhHHHH-hHHHHHHHHhhhccc
Q 043980 97 DELVKILECKKEYAQIVIPVLYRVDPSDVRNQTGSF-GDSFSKLEE-FKEAAELEECFEGSS 156 (233)
Q Consensus 97 ~El~~~~~~~~~~~~~viPIf~~v~~~~vr~~~g~~-~~~f~~~e~-~~~~~e~~~~W~~AL 156 (233)
.|+..|+.+......+|||||++++++++......+ ...+..++. +....+.+.+|++||
T Consensus 84 ~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 84 YQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 999999987633333688999988766654432221 111222334 666677899999886
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.90 E-value=3.9e-25 Score=171.80 Aligned_cols=97 Identities=23% Similarity=0.366 Sum_probs=88.0
Q ss_pred CCCcceEEEcCcccccccchHHH-HHHHHhhC--CCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhH
Q 043980 21 NNKKYEVFVSFRGEDTRDKFTSH-LYSALSRQ--SIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCV 96 (233)
Q Consensus 21 ~~~~~dVFISy~~~D~~~~f~~~-L~~~L~~~--gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~ 96 (233)
.+++|||||||+++|. .|+.+ |+.+|+.+ |+++|+|+ |+.+|+.+.++|.++|++|+++|+|+|+||++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999994 69997 99999986 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcccceeeceeee
Q 043980 97 DELVKILECK-KEYAQIVIPVLYR 119 (233)
Q Consensus 97 ~El~~~~~~~-~~~~~~viPIf~~ 119 (233)
.|+..|+... +.++.+|||||++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~ 103 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLE 103 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEec
Confidence 9999887533 4556789999976
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.90 E-value=8.3e-25 Score=171.83 Aligned_cols=99 Identities=17% Similarity=0.306 Sum_probs=89.7
Q ss_pred CCCcceEEEcCcccccccchHHHHHHHHhhC--CCeEEEeC-ccCCCcchHHHHHHHHH-hcCceEEEeecCCCCchhhH
Q 043980 21 NNKKYEVFVSFRGEDTRDKFTSHLYSALSRQ--SIQTFIDD-QLNRGDEISQSLVNAIE-ASAISVIIFSESYTSSRWCV 96 (233)
Q Consensus 21 ~~~~~dVFISy~~~D~~~~f~~~L~~~L~~~--gi~~~~d~-~~~~G~~~~~~i~~~i~-~s~~~i~v~S~~y~~S~wc~ 96 (233)
.++.|||||||+++| ..||.+|+++|+++ |+++|+|+ |+.+|+.+.++|.++|+ .|+++|+|+|++|++|.||.
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 468999999999999 67999999999985 69999998 99999999999999999 79999999999999999999
Q ss_pred HHHHHHHHhh-hcccceeeceeeeec
Q 043980 97 DELVKILECK-KEYAQIVIPVLYRVD 121 (233)
Q Consensus 97 ~El~~~~~~~-~~~~~~viPIf~~v~ 121 (233)
.|+..|+.+. +.++.+||||+|+.-
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEccc
Confidence 9999999875 445668999998753
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.89 E-value=1.1e-24 Score=173.78 Aligned_cols=98 Identities=23% Similarity=0.451 Sum_probs=85.0
Q ss_pred CCCCcceEEEcCcccccccchHHH-HHHHHhh--CCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhh
Q 043980 20 RNNKKYEVFVSFRGEDTRDKFTSH-LYSALSR--QSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWC 95 (233)
Q Consensus 20 ~~~~~~dVFISy~~~D~~~~f~~~-L~~~L~~--~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc 95 (233)
+.++.|||||||+++| ..||.+ |+++|+. +|+++|+|+ |+.+|+.+.++|.++|++|+++|+|+|+||++|.||
T Consensus 31 ~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc 108 (178)
T 2j67_A 31 KRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108 (178)
T ss_dssp CCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred CCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence 4678999999999999 479975 9999998 899999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hcccceeeceeee
Q 043980 96 VDELVKILECK-KEYAQIVIPVLYR 119 (233)
Q Consensus 96 ~~El~~~~~~~-~~~~~~viPIf~~ 119 (233)
..|+..|+.+. +.++.+|||||++
T Consensus 109 ~~El~~a~~~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 109 HYEFYFAHHNLFHENSDHIILILLE 133 (178)
T ss_dssp GTHHHHTTCC-------CEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEec
Confidence 99999998644 4556789999976
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.89 E-value=5.3e-24 Score=167.07 Aligned_cols=97 Identities=20% Similarity=0.346 Sum_probs=86.5
Q ss_pred CcceEEEcCccccc---------ccchHHHHHH-HHh-hCCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCC
Q 043980 23 KKYEVFVSFRGEDT---------RDKFTSHLYS-ALS-RQSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYT 90 (233)
Q Consensus 23 ~~~dVFISy~~~D~---------~~~f~~~L~~-~L~-~~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~ 90 (233)
+.|||||||+++|. +..||.+|.. .|+ ..|+++|+|+ |+.+|+.+.++|.++|++|+.+|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 2568888665 699 7999999999 9999999999999999999999999999997
Q ss_pred -CchhhHHHHHHHHHhh-hcccceeeceeee
Q 043980 91 -SSRWCVDELVKILECK-KEYAQIVIPVLYR 119 (233)
Q Consensus 91 -~S~wc~~El~~~~~~~-~~~~~~viPIf~~ 119 (233)
.|.||..|+..|+.+. ..++.+||||++.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~ 111 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECS 111 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 9999999999999876 5567789999965
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=5.5e-18 Score=163.65 Aligned_cols=99 Identities=16% Similarity=0.311 Sum_probs=89.0
Q ss_pred CCCcceEEEcCcccccccchH-HHHHHHHhh-----CCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCCCch
Q 043980 21 NNKKYEVFVSFRGEDTRDKFT-SHLYSALSR-----QSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYTSSR 93 (233)
Q Consensus 21 ~~~~~dVFISy~~~D~~~~f~-~~L~~~L~~-----~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~ 93 (233)
..++|||||||+++|. .|| .+|.+.|+. .|+++|+|+ |+.||+.+.++|.++|++||++|+|+|++|+.|+
T Consensus 667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 5789999999999994 577 789999985 589999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhh-hcccceeeceeeeec
Q 043980 94 WCVDELVKILECK-KEYAQIVIPVLYRVD 121 (233)
Q Consensus 94 wc~~El~~~~~~~-~~~~~~viPIf~~v~ 121 (233)
||..|+..|+.+. ++++.++||||++.-
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~ 773 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSL 773 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccC
Confidence 9999999888665 556678999998743
No 10
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.92 E-value=5.9e-10 Score=102.84 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=43.1
Q ss_pred ccccchHHHHHHHhccC-CCCeEEEEEEcCCCChHHHHHHHHHH----HHhcCCC
Q 043980 184 AGVESRVEEIESLLGVK-SKDVYALGIWGIGGIGKTKIARAIFD----KISSDFE 233 (233)
Q Consensus 184 ~g~~~~~~~l~~~l~~~-~~~~~~i~i~G~gGiGKTtla~~v~~----~~~~~f~ 233 (233)
+||+.++++|.++|..+ ..+.++|+|+||||+||||||+++|+ +++.+|+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~ 185 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD 185 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC
Confidence 59999999999988654 34589999999999999999999997 5676674
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.75 E-value=4.5e-09 Score=104.14 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=46.0
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
|.....++||+.++++|.++|.....+.++|+|+||||+||||||+++|++
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 556778999999999999998766667899999999999999999999986
No 12
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.74 E-value=6.1e-09 Score=96.35 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=45.3
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
|...+.+|||+..+++|.++|.....+.++|+|+||||+||||||.+++++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 556788999999999999998765566899999999999999999999874
No 13
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.49 E-value=6.2e-08 Score=94.66 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=42.3
Q ss_pred ccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH--HhcCCC
Q 043980 182 QLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK--ISSDFE 233 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~--~~~~f~ 233 (233)
..+||+..+++|.++|... ++.++|+|+||||+||||||+++|++ ++.+|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd 181 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHS
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCC
Confidence 3599999999999988742 34799999999999999999999974 555553
No 14
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.01 E-value=4.6e-06 Score=60.71 Aligned_cols=63 Identities=5% Similarity=-0.008 Sum_probs=49.5
Q ss_pred CcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHHHHHH
Q 043980 23 KKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDELVKI 102 (233)
Q Consensus 23 ~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 102 (233)
++|.+||||..+| . .+.|...|...|+..- | ..|+.|+++|++.++....|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 5799999999998 2 4555555555566443 2 557899999999999999999999999877
Q ss_pred HH
Q 043980 103 LE 104 (233)
Q Consensus 103 ~~ 104 (233)
.+
T Consensus 64 ~~ 65 (111)
T 1eiw_A 64 RK 65 (111)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.93 E-value=1.1e-05 Score=70.73 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=39.4
Q ss_pred CCCccccccchHHHHHHHh-cc---C---CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLL-GV---K---SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l-~~---~---~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+..++||+.+++.+.+++ .. + .....+|+|+|++|+|||||++++++++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 3477999999999998887 42 1 22344455599999999999999998764
No 16
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.90 E-value=1.2e-05 Score=69.57 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=42.3
Q ss_pred CCCccccccchHHHHHHHhccC--CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVK--SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+..++|++..++.+.+++... ......+.|+|++|+|||||++++++.+.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999987642 33456889999999999999999998764
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.88 E-value=1.8e-05 Score=61.09 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=40.2
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.....++|++..++.+.+.+.... .+.+-|+|.+|+|||+||+++++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999998876532 3456799999999999999999875
No 18
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.87 E-value=1e-05 Score=69.05 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=39.6
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.....++||+..++.|.+++..+ +++.|+|++|+|||||++++.++
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH
Confidence 34567999999999999988642 68999999999999999999875
No 19
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.81 E-value=2.6e-05 Score=62.40 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=41.1
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.....++|++..++.+..++..+.. ...+-|+|.+|+||||||+++++.+.
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~-~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCC-CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3446789999999999988865432 34788999999999999999998764
No 20
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.75 E-value=3.8e-05 Score=60.73 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=39.9
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.....++|++..++.+.+++..... ..+-|+|.+|+|||+||+++++.+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNI--PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCC--CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 3446789999999999998875432 238899999999999999999875
No 21
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.73 E-value=2.9e-05 Score=67.38 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=40.7
Q ss_pred CCccccccchHHHHHHHhcc--CCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGV--KSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~--~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+..++|++..++++..++.. .....+.+-|+|++|+||||||+++++.+
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 37799999999999887654 23335689999999999999999999876
No 22
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.72 E-value=3.5e-05 Score=59.47 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=39.8
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.....++|++..++.+.+.+... ..+.+-|+|.+|+||||||+++++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999998887653 23456799999999999999999876
No 23
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.69 E-value=2.8e-05 Score=67.25 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=41.7
Q ss_pred CCCccccccchHHHHHHHhccC--CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVK--SKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+..++|++..++++..++... ....+.+-|+|++|+||||||+++++.+
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4478999999999999987542 3345678899999999999999999876
No 24
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.57 E-value=0.00011 Score=63.65 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=41.4
Q ss_pred CCCccccccchHHHHHHHhcc----CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEIESLLGV----KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~----~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.+..++|++..++.+..++.. .....+.+.|+|.+|+|||||++++++.+..
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 347799999999999887764 2222348899999999999999999987643
No 25
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=0.00018 Score=60.56 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=40.0
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.....++|++..++.+..++..+.. ..+-++|.+|+||||+|+++++.+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHh
Confidence 3446789999999999998875432 227899999999999999999875
No 26
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=0.0002 Score=60.49 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=40.6
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
|.....++|++..++.+..++..+. ..-+-++|.+|+||||+|+++++.+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3445679999999999998887543 2238899999999999999999875
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.36 E-value=0.0001 Score=61.42 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=39.4
Q ss_pred CCCccccccchHHHHHHHhccC-----------CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVK-----------SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+++|.+..+++|.+.+... ....+-+-|+|.+|+|||+||+++++.+.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4467899999999888766421 12345688999999999999999998754
No 28
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.36 E-value=0.00011 Score=55.36 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=33.3
Q ss_pred ccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 182 QLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+++|....++++.+.+..-...-.-|-|+|.+|+|||++|+++++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5788888888888766431112223569999999999999999885
No 29
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.35 E-value=0.00011 Score=62.88 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=41.5
Q ss_pred CCCCccccccchHHHHHHHhccC---CCCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 178 DNKNQLAGVESRVEEIESLLGVK---SKDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
.....++|++..++.+..++... ......+-|+|.+|+|||+||+++.+.....
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 34567899999899888877642 2234557899999999999999998875443
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.34 E-value=0.00019 Score=60.28 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=39.3
Q ss_pred CCCccccccchHHHHHHHhccC----------CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVK----------SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~----------~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-.+++|.+..++.+.+++... ....+.+-|+|.+|+||||||+++++...
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4477999999888888765320 11245788999999999999999998754
No 31
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.31 E-value=0.00036 Score=59.67 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=40.7
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|.....++|++..++.+..++..+.... +-++|.+|+||||+|+++.+.+.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~--~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCE--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4455678999999999998887543222 78999999999999999988753
No 32
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.28 E-value=0.00018 Score=60.88 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=38.6
Q ss_pred CCccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 180 KNQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
-.+++|.+..+++|.+++.. +....+.+-|+|.+|+||||||+++++...
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 35688999888888776542 123356788999999999999999998754
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.23 E-value=0.00027 Score=61.36 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=39.4
Q ss_pred CCCccccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGV----------KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-.+++|.+..++.|.+++.. .....+.+-|+|.+|+|||+||+++++...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 446789999989888886642 112345688999999999999999998753
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.21 E-value=0.00013 Score=61.86 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=40.3
Q ss_pred CCCCccccccchHHHHHHHhccC---CCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 178 DNKNQLAGVESRVEEIESLLGVK---SKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.....++|++..++.+..++... ......+-|+|.+|+|||+||+++++....
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~ 64 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 64 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34567999998888888776531 122356779999999999999999987643
No 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.16 E-value=0.00037 Score=59.49 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=39.2
Q ss_pred CCCccccccchHHHHHHHhc----------cCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEIESLLG----------VKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~----------~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.-.+++|.+..++.|.+++. ......+-+-++|.+|+|||+||+++++....
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 34678999998888888662 11122456789999999999999999987543
No 36
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.09 E-value=0.00065 Score=58.47 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=40.5
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.....++|++..++.+...+..+.. ...+-|+|..|+||||+|+++.+.+.
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~~-~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTCC-CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CchhhccCcHHHHHHHHHHHHhCCC-CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3446699999999999888765432 34677999999999999999998764
No 37
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.08 E-value=0.00038 Score=57.22 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=35.7
Q ss_pred CCCccccccchHHHHHHHhcc---C-------CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGV---K-------SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~---~-------~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-.+++|.+..++++.+++.. . ....+-+.|+|.+|+||||||+++++...
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 346688888777776654321 0 11123478999999999999999998754
No 38
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.08 E-value=0.00057 Score=57.40 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=38.8
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
....++|++..++.+..++..+. ...+-++|.+|+||||+|+++++.+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHh
Confidence 44668999998998888876543 2237899999999999999999875
No 39
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.03 E-value=0.0003 Score=58.06 Aligned_cols=52 Identities=25% Similarity=0.295 Sum_probs=37.5
Q ss_pred CCCccccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEIESLLGV----------KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
...+++|.+..++.+.+++.. +....+-+-|+|.+|+|||+||+++++....
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 346789999888888776541 1111223668999999999999999987543
No 40
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.03 E-value=0.00043 Score=58.24 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=34.9
Q ss_pred ccccccchHHHHHHHhccC-------------CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 182 QLAGVESRVEEIESLLGVK-------------SKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~~~-------------~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.++|.+..++.+.+++..- .....-+-|+|.+|+|||+||+++.+.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4688887777776654311 2234567899999999999999988875
No 41
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.03 E-value=0.00053 Score=62.50 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=41.3
Q ss_pred CCCCCccccccchHHHHHHHhccCC---------------CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKS---------------KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~---------------~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
|....+++|++..++++..++.... ...+.+-|+|.+|+||||+|+++++.+
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4445678999999999998876410 124688899999999999999999875
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.00 E-value=0.00068 Score=58.46 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=37.8
Q ss_pred CCccccccchHHHHHHH---hccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 180 KNQLAGVESRVEEIESL---LGVKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~---l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
...++|.+..++.+..+ +..+....+.+-|+|.+|+|||+||+++.+.+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46789999877765443 3333322357889999999999999999988653
No 43
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.99 E-value=0.00048 Score=59.22 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=35.9
Q ss_pred CCccccccchHHHHHHHhccC---CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 180 KNQLAGVESRVEEIESLLGVK---SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~---~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
-..++|.+..++.+...+..+ ......+.++|.+|.||||||+.+.+.+.
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 355678776666665555432 12245689999999999999999998763
No 44
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.99 E-value=0.00046 Score=53.57 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+.|+|.+|.|||||++++++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998763
No 45
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.00063 Score=58.33 Aligned_cols=49 Identities=24% Similarity=0.292 Sum_probs=38.0
Q ss_pred CCCCccccccchHHHHHHHh-ccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLL-GVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l-~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
....+++|.+..++.+..++ ..+.. .. +.|+|..|+||||+++.+.+.+
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDL-PH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCC-CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCC-Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 34466889988888888877 44332 23 8899999999999999998864
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.92 E-value=0.00068 Score=60.83 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=38.2
Q ss_pred CCCCccccccchH---HHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 178 DNKNQLAGVESRV---EEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 178 ~~~~~~~g~~~~~---~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.....++|.+..+ ..+...+..+. ...+-++|.+|+||||||+.+++....
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3446688887666 56666665432 467889999999999999999987543
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.92 E-value=0.0011 Score=59.67 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=39.1
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
....++|++..++.+...|..... .-+-++|.+|+|||+||+.+++.+
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~--~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTK--NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSS--CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCccCcHHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999998865332 234589999999999999999986
No 48
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.88 E-value=0.0009 Score=58.07 Aligned_cols=52 Identities=23% Similarity=0.375 Sum_probs=38.5
Q ss_pred CCCccccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEIESLLGV----------KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.-.+++|.+..++.|.+.+.. .....+-+-++|.+|+|||+||+++++.+..
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 346789999888888876521 1112345778999999999999999987643
No 49
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.88 E-value=0.00094 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
+.+-|+|.+|+||||||+++++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999998753
No 50
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.87 E-value=0.00053 Score=57.42 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=35.8
Q ss_pred CccccccchHHHHHHHhcc------------CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGV------------KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~------------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..++|.+..++.+...+.. ......-+-++|.+|+|||++|+++.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578988888888765542 001134566899999999999999998754
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.86 E-value=0.001 Score=58.25 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=39.1
Q ss_pred CCCccccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGV----------KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-.+++|.+..++.|.+++.. .....+-+-|+|.+|+|||+||+++.+...
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 456789999988888886621 011235788999999999999999988753
No 52
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.86 E-value=0.00013 Score=55.00 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=31.1
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.++|....++++.+.+..-.....-|-|+|.+|+|||++|+++++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35788888888887765431111223568999999999999988753
No 53
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.00048 Score=59.10 Aligned_cols=47 Identities=13% Similarity=0.011 Sum_probs=37.8
Q ss_pred cccccchHHHHHHHhcc--CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 183 LAGVESRVEEIESLLGV--KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 183 ~~g~~~~~~~l~~~l~~--~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
+.||+.+.+++...|.. .......+-|+|.+|+|||++++++.+++.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 68899999998876553 223456778999999999999999999874
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.84 E-value=0.0013 Score=52.60 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=31.7
Q ss_pred Ccccccc---chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVE---SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~---~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..++|.. ..++.+..++... ..+.+-|+|.+|+||||||+++++...
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566533 3344455544432 356788999999999999999998754
No 55
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.82 E-value=0.00094 Score=57.16 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=37.6
Q ss_pred CCCccccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGV----------KSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|.+..++.|.+.+.. .....+-+-++|.+|+|||+||+++++..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 346788988888888765421 11224678899999999999999999875
No 56
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.71 E-value=0.0019 Score=53.46 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=34.2
Q ss_pred CccccccchHHHHHH-------Hhcc-CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 181 NQLAGVESRVEEIES-------LLGV-KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~-------~l~~-~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
..++|.....+++.. .+.. .......+-|+|.+|+|||+||+++++....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 456676655555444 2221 2334677889999999999999999987543
No 57
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.70 E-value=0.0023 Score=54.12 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.5
Q ss_pred CCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 200 KSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 200 ~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
......+|+|.|..|.||||||+.+...+
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34457899999999999999999887754
No 58
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.68 E-value=0.0014 Score=56.77 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=34.2
Q ss_pred cccccchHHHHHHHhc-------------cCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 183 LAGVESRVEEIESLLG-------------VKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 183 ~~g~~~~~~~l~~~l~-------------~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
++|.+..++.+...+. ........+-++|.+|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6788877777766552 1111235678899999999999999998754
No 59
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.0024 Score=54.72 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=37.0
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-..++|.+.-++.|...+..+. ..-+.++|..|+||||+|+++.+.+.
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34567788777777777776543 22278999999999999999988753
No 60
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.64 E-value=0.0012 Score=55.37 Aligned_cols=48 Identities=15% Similarity=0.380 Sum_probs=35.9
Q ss_pred CccccccchHHHHHHHhccCC-------CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKS-------KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~-------~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++|.+..++.+...+.... .....+.++|.+|+||||+|+++++.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 456788877777766554321 113578999999999999999999875
No 61
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.63 E-value=0.0017 Score=54.99 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=40.6
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
|..-.+++|.+..++.+..++..+. ...++-+.|.+|+|||++|+++.+.+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3445778999999999998887543 235667778899999999999998753
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.56 E-value=0.0022 Score=61.05 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=39.3
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
....++|++..++.+...|..... .-+-++|.+|+|||++|+.+.+.+
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~--~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTK--NNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSS--CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHhCCCC--CCeEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999998865332 235689999999999999999886
No 63
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0019 Score=57.62 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=39.2
Q ss_pred CCCccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.-.++.|.+..+++|.+.+.. +-...+-+-++|.+|+|||+||+++++...-
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346788999888888775432 2233566789999999999999999997543
No 64
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.53 E-value=0.0013 Score=63.20 Aligned_cols=50 Identities=24% Similarity=0.435 Sum_probs=39.3
Q ss_pred CCccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 180 KNQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
-.+++|.+..+++|.+++.. +......+.|+|.+|+||||||+++.+.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 36789999999999887653 223345789999999999999999987643
No 65
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.51 E-value=0.0014 Score=59.46 Aligned_cols=50 Identities=24% Similarity=0.445 Sum_probs=38.6
Q ss_pred CCccccccchHHHHHHHhccC-----------CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 180 KNQLAGVESRVEEIESLLGVK-----------SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...++|.+..+++|.+++..- ....+-+-|+|.+|+|||+||+++++...
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 356899999999988876431 22335578999999999999999988743
No 66
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.50 E-value=0.0023 Score=54.28 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=26.9
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 192 EIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 192 ~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+..++.........+-|+|.+|+||||||+++++.+
T Consensus 25 ~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 25 VVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3444444332234678899999999999999999876
No 67
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0022 Score=57.38 Aligned_cols=52 Identities=21% Similarity=0.407 Sum_probs=39.4
Q ss_pred CCCccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.-.++.|.+..+++|.+.+.. +....+=|-++|.+|.|||+||+++++....
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 347788999888888775432 2223467788999999999999999997544
No 68
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0019 Score=57.13 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=39.2
Q ss_pred CCCccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 179 NKNQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
.-.++.|.+..+++|.+.+.. +-...+=+=++|.+|.|||.||+++++.....
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 336788999888888775432 22234557789999999999999999975443
No 69
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.42 E-value=0.0019 Score=57.71 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=38.4
Q ss_pred CCCccccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGV----------KSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|.+..++.|.+.+.. .....+-+-++|.+|+|||+||+++++..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 446789999888888876521 11224678899999999999999999875
No 70
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.39 E-value=0.0037 Score=51.00 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.+-+-|+|.+|+|||+||+++++....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345679999999999999999987543
No 71
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0024 Score=57.35 Aligned_cols=50 Identities=20% Similarity=0.417 Sum_probs=38.6
Q ss_pred CccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 181 NQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.++.|.+..+++|.+.+.. +-...+-|=++|.+|.|||+||+++++....
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 6788999888888775321 2233566779999999999999999997544
No 72
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0027 Score=56.67 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=39.1
Q ss_pred CCCccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.-.++.|.+..+++|.+.+.. +-...+-|=++|.+|.|||+||+++++....
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 347788999888888764321 2223567788999999999999999997544
No 73
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.37 E-value=0.0022 Score=54.07 Aligned_cols=29 Identities=34% Similarity=0.588 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
..+.+-++|.+|+|||+||+++++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35678889999999999999999986543
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.36 E-value=0.0016 Score=53.30 Aligned_cols=48 Identities=27% Similarity=0.439 Sum_probs=32.2
Q ss_pred CccccccchHHHHHHHhcc--C--------CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGV--K--------SKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~--~--------~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+++|.+..+.++.++... . -.-.+-+.|+|.+|.|||||++++.+..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5677877666666554321 0 0001228899999999999999998864
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.33 E-value=0.0028 Score=61.22 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=40.3
Q ss_pred CCCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 177 SDNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 177 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+.....++|++..++.+.+.|.... .+-+-++|.+|+||||||+.+.+.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3445678999999999999876533 2345789999999999999999876
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.32 E-value=0.0034 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 043980 207 LGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 207 i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+.++|.+|.|||||++++....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 8999999999999999998864
No 77
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.32 E-value=0.0033 Score=56.84 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=35.8
Q ss_pred CCccccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 180 KNQLAGVESRVEEIESLLGV----------KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
-.+++|.+..++++.+++.. +..-.+-+-|+|.+|.||||||+++++...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35688988877777665432 111123477999999999999999998754
No 78
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.31 E-value=0.0035 Score=56.16 Aligned_cols=50 Identities=28% Similarity=0.284 Sum_probs=37.0
Q ss_pred CCccccccchHHHHHHHhc---cCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 180 KNQLAGVESRVEEIESLLG---VKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~---~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...++|.+..++.+..++. .+....+-+-++|.+|+|||+||+++.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 3678999987776655433 2322234577899999999999999998765
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.30 E-value=0.0047 Score=58.72 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=39.7
Q ss_pred CCCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 178 DNKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 178 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.....++|++..++.+.+.|.... ..-+-++|.+|+||||+|+.+.+.+
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 344678999999999998876542 2345689999999999999999876
No 80
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.29 E-value=0.0024 Score=53.05 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=32.7
Q ss_pred CCccccccchHHHHHHHhccC----------CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVK----------SKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~----------~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+++|.+..++++..+...- -.-.+-+.|+|.+|.|||||++++.+.+
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 356777776666665543210 0001228899999999999999998864
No 81
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.23 E-value=0.0029 Score=53.84 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=35.4
Q ss_pred CCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 180 KNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...++|++..++.+...+..+ .-+-++|.+|+|||+||+++.+.+.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356789888887777655432 2466899999999999999988654
No 82
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.20 E-value=0.0037 Score=54.28 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+-++|.+|+|||++|+++++.+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577999999999999999998754
No 83
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.12 E-value=0.003 Score=47.85 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
....++|+|..|.|||||++++++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999865
No 84
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.08 E-value=0.015 Score=45.46 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=47.7
Q ss_pred hHHHHHHHHhhCCCeEEEeC-ccC-------C-CcchHHHHHHHHHhcCceEEEeecCCCCchhhHHHHHHHH
Q 043980 40 FTSHLYSALSRQSIQTFIDD-QLN-------R-GDEISQSLVNAIEASAISVIIFSESYTSSRWCVDELVKIL 103 (233)
Q Consensus 40 f~~~L~~~L~~~gi~~~~d~-~~~-------~-G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~ 103 (233)
....|..--+...+--|.|. +.. . -..|-+.+.+.|..|..+|+++|++...|.|..+|+..++
T Consensus 33 yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai 105 (189)
T 3hyn_A 33 YYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGI 105 (189)
T ss_dssp HHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHH
Confidence 34555444444455556664 442 2 2347789999999999999999999999999999999887
No 85
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0058 Score=54.42 Aligned_cols=52 Identities=27% Similarity=0.465 Sum_probs=38.9
Q ss_pred CCCccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 179 NKNQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
.-.++.|.+..+++|.+.+.. +..-.+=|=++|.+|.|||.||+++++....
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 346788999888888774431 1223466889999999999999999997544
No 86
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0033 Score=51.97 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...|+|.|+.|.||||+++.+...+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999987643
No 87
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.87 E-value=0.0062 Score=54.35 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+-|+|.+|+||||||+++++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999998763
No 88
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.77 E-value=0.011 Score=45.18 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=24.3
Q ss_pred CCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 200 KSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 200 ~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-..-.+++|.|..|.|||||.+.+..-+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33456799999999999999999988754
No 89
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.74 E-value=0.013 Score=50.37 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+++|+|..|.||||+++.+...+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999987754
No 90
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.72 E-value=0.0056 Score=55.67 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=35.1
Q ss_pred CCCccccccchHHHHHHHhcc--C--------CCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 179 NKNQLAGVESRVEEIESLLGV--K--------SKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~--~--------~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+++|.+..+.++.+++.. . ..-.+-+.|+|.+|.||||||+++++..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 346688888777777664321 0 0011238899999999999999999864
No 91
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.70 E-value=0.0087 Score=51.03 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
....++||.|..|.|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3468999999999999999999887553
No 92
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.66 E-value=0.0062 Score=58.42 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGV-----------KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~-----------~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.++.|.+..+++|.+++.. +....+-|-++|.+|+|||+||+++++...
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678899888888775431 112346688999999999999999998644
No 93
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.66 E-value=0.015 Score=50.25 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 192 EIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 192 ~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
++.+.+........+|+|+|.+|+|||||+..+...+
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333333333457899999999999999999987654
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.64 E-value=0.0099 Score=47.81 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=28.7
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
+..+..++..- ...+.+-|+|.+|.||||+|.++.+.+.
T Consensus 45 ~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45555555532 2245689999999999999999998764
No 95
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.57 E-value=0.017 Score=49.34 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+++|+|.+|+||||++..+...+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999887754
No 96
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.54 E-value=0.0073 Score=51.36 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCCccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 179 NKNQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 179 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-..++|.+..++.+...+.... ..-+-|+|.+|+|||+||+++++.+.
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34568888765444333222111 11277899999999999999998753
No 97
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.54 E-value=0.0078 Score=50.58 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+|-|.|++|.||||+|+.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35788999999999999999998764
No 98
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.49 E-value=0.019 Score=48.78 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+++|+|.+|.||||++..+...+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 367999999999999999999887543
No 99
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.47 E-value=0.012 Score=49.85 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+++|+|..|.||||+++.+...+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999887643
No 100
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.44 E-value=0.014 Score=52.30 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=33.9
Q ss_pred CccccccchHHHHHHHhcc---------C---CCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 181 NQLAGVESRVEEIESLLGV---------K---SKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~---------~---~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
..++|.+.-++.+...+.. . ....+-+-++|.+|+||||+|+++...+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3467877777766554311 0 011244778999999999999999987543
No 101
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.43 E-value=0.0073 Score=49.56 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+|.|.|++|.||||+|+.+.+.+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988653
No 102
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.40 E-value=0.0088 Score=50.05 Aligned_cols=23 Identities=39% Similarity=0.765 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~ 225 (233)
...+|+|.|+.|.||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999999886
No 103
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.40 E-value=0.012 Score=50.23 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
++.++|+|.|=||+||||.+--+.-.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 46899999999999999988765543
No 104
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.33 E-value=0.012 Score=49.80 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...++||.|..|.|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999887553
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.30 E-value=0.013 Score=49.77 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+++|+|.+|.||||+++.+...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999999887543
No 106
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.27 E-value=0.11 Score=43.50 Aligned_cols=29 Identities=7% Similarity=0.034 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCceEEEeecCCCCchhh
Q 043980 67 ISQSLVNAIEASAISVIIFSESYTSSRWC 95 (233)
Q Consensus 67 ~~~~i~~~i~~s~~~i~v~S~~y~~S~wc 95 (233)
...++.+.++++++.|.|+.-.-..+..|
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~ 41 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN 41 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC
Confidence 44678889999999999998766555555
No 107
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.22 E-value=0.017 Score=49.45 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
....++||.|..|.|||||++.+...+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467999999999999999999876543
No 108
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.21 E-value=0.015 Score=50.93 Aligned_cols=29 Identities=21% Similarity=0.084 Sum_probs=24.3
Q ss_pred CCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 200 KSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 200 ~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+....++++|+|..|.|||||++.+....
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33446799999999999999999998754
No 109
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.18 E-value=0.012 Score=53.45 Aligned_cols=44 Identities=18% Similarity=0.027 Sum_probs=33.9
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++|.+..++.+...+..+ .-+-++|.+|+|||+||+++++.+
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 56789888777776655433 246689999999999999998754
No 110
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.17 E-value=0.017 Score=48.97 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=27.0
Q ss_pred HHHHHhccCCC-CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 192 EIESLLGVKSK-DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 192 ~l~~~l~~~~~-~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.+.+++..-.. ...-+-|+|..|+|||+||.++++.+.
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 44445543221 245678999999999999999998754
No 111
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.16 E-value=0.026 Score=50.33 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..++|.++|.+|+||||++..+...+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999877543
No 112
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.15 E-value=0.013 Score=49.62 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+++++|.+|+||||++..+...+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999877543
No 113
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.14 E-value=0.02 Score=45.43 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
....|.|+|.+|+|||||+..+....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999987763
No 114
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.13 E-value=0.016 Score=50.13 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=29.1
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 191 EEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..|..+|..+-..-.++.|+|..|.|||||+..+...+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555565444456899999999999999999987654
No 115
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.13 E-value=0.017 Score=48.24 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-.+++|.|.+|.|||||++.+...+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999987754
No 116
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.11 E-value=0.024 Score=47.93 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+++++|.+|+||||++..+...+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887654
No 117
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.11 E-value=0.018 Score=50.16 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+++|+|..|.||||+++.+...+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 357999999999999999999887643
No 118
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.09 E-value=0.016 Score=53.08 Aligned_cols=48 Identities=33% Similarity=0.401 Sum_probs=32.6
Q ss_pred ccccccchHHHHHHHhcc----CCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 182 QLAGVESRVEEIESLLGV----KSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~~----~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
+++|.+.-.+.+.+.+.. .......+.++|.+|+||||||+.+++.+.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456766555555432211 111356889999999999999999998754
No 119
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.03 E-value=0.015 Score=53.95 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=35.0
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++|.+.-++.+...+..+ ..+.|+|.+|+||||||+.+++.+
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccC
Confidence 56788887777776666533 478999999999999999998754
No 120
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.92 E-value=0.02 Score=51.92 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+++|+|..|.|||||++.+...+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35799999999999999999988754
No 121
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.91 E-value=0.02 Score=54.44 Aligned_cols=48 Identities=23% Similarity=0.405 Sum_probs=36.3
Q ss_pred CccccccchHHHHHHHhccCC-------CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKS-------KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~-------~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++|.+..++.+...+.... .....+-++|.+|+|||++|+++++.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899888877776554311 113368899999999999999999875
No 122
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.91 E-value=0.027 Score=50.18 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+|.++|.+|+||||++..+...+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999887654
No 123
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.86 E-value=0.031 Score=46.57 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=28.6
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 191 EEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..+..||.......+.+-++|.+|.|||++|.++.+.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3456666654234567999999999999999999885
No 124
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.80 E-value=0.036 Score=50.41 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++|.|+|.+|+||||++..+...+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999987654
No 125
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.74 E-value=0.017 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|+|..|.|||||.+.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999998764
No 126
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.72 E-value=0.016 Score=54.94 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=35.4
Q ss_pred CccccccchHHHHHHHhccCC-------CCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGVKS-------KDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~-------~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..++|.+..++.+...+.... .....+-++|.+|+|||++|+++.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 457788877777766543211 1234688999999999999999998753
No 127
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.72 E-value=0.024 Score=50.54 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+|.|+|.+|+||||++..+...+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999987754
No 128
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.64 E-value=0.017 Score=55.54 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=38.2
Q ss_pred CCccccccchHHHHHHHhccC-----------CCCeEEEEEEcCCCChHHHHHHHHHHHHhcC
Q 043980 180 KNQLAGVESRVEEIESLLGVK-----------SKDVYALGIWGIGGIGKTKIARAIFDKISSD 231 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~i~i~G~gGiGKTtla~~v~~~~~~~ 231 (233)
-..+.|.+.-++.+.+.+... ......+.++|.+|+||||||+++.+.+...
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 356788888888887765421 1123557799999999999999999876543
No 129
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.62 E-value=0.026 Score=47.58 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+++++|.+|.||||++..+...+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999987754
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.60 E-value=0.042 Score=47.16 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=26.5
Q ss_pred HHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 194 ESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 194 ~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+-+........+++|.|.+|.|||||.+.+...+
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 33334444457899999999999999999987643
No 131
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.60 E-value=0.029 Score=47.67 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=24.2
Q ss_pred cCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 199 VKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 199 ~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-..-.+++|+|..|.|||||++.+..-+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 333456789999999999999999987643
No 132
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.55 E-value=0.027 Score=47.24 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++|+|+|-||+||||+|..+...+
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHHHH
Confidence 46889999999999999999877654
No 133
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.53 E-value=0.013 Score=50.58 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+|.|.|+.|+||||||..+..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999988753
No 134
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.53 E-value=0.031 Score=48.51 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=31.3
Q ss_pred chHHHHHHHhc-cCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 188 SRVEEIESLLG-VKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 188 ~~~~~l~~~l~-~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-...|..+|. .+-..-.++.|.|.+|+||||||..+....
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566777776 343446899999999999999999987754
No 135
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.52 E-value=0.045 Score=47.00 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.0
Q ss_pred CCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 200 KSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 200 ~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
......+++|.|.+|.|||||+..+...+
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33457899999999999999999987643
No 136
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.52 E-value=0.021 Score=46.56 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|+|..|.|||||.+.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998765
No 137
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.48 E-value=0.021 Score=47.29 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998765
No 138
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.46 E-value=0.023 Score=47.23 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|+|..|.|||||.+.+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998875
No 139
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.45 E-value=0.022 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998765
No 140
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.42 E-value=0.022 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|+|..|.|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999998764
No 141
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.42 E-value=0.022 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|+|..|.|||||.+.+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 356899999999999999998764
No 142
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.40 E-value=0.023 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|.|..|.|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998765
No 143
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.40 E-value=0.03 Score=48.03 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+++-|+|++|+||||||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356679999999999999998764
No 144
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.32 E-value=0.024 Score=47.05 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999998765
No 145
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.31 E-value=0.025 Score=45.84 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.+++|+|..|.|||||.+.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999988653
No 146
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.29 E-value=0.02 Score=50.60 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+|.|+|++|.||||+|+.+.+++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999987653
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.28 E-value=0.29 Score=43.24 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
+..-|+|+|.+|+|||||..++..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~ 197 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG 197 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC
Confidence 456789999999999999998865
No 148
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.24 E-value=0.026 Score=46.31 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|+|..|.|||||.+.+..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998765
No 149
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.23 E-value=0.033 Score=48.16 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=31.3
Q ss_pred ccchHHHHHHHhc-cCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 186 VESRVEEIESLLG-VKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 186 ~~~~~~~l~~~l~-~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...-...|..+|. .+-..-+++.|+|.+|+||||||..+....
T Consensus 42 i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344556666666 333345789999999999999999987643
No 150
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.18 E-value=0.027 Score=46.56 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998765
No 151
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.18 E-value=0.027 Score=46.58 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|+|..|.|||||.+.+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998764
No 152
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.16 E-value=0.064 Score=45.49 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=31.9
Q ss_pred cccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 183 LAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 183 ~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..|...-...|..++ .+-..-.++-|.|.+|+||||||..+....
T Consensus 48 ~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 48 ITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344445566666666 333345788899999999999999887653
No 153
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.16 E-value=0.035 Score=50.58 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+|-++|++|.||||+|+++.+.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999997764
No 154
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.15 E-value=0.028 Score=49.55 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=27.8
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHH
Q 043980 189 RVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~ 225 (233)
-...|..+|..+-..-.++.|+|.+|+|||||+..+.
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3555666665443345799999999999999999765
No 155
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.12 E-value=0.031 Score=42.96 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....|.|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999988763
No 156
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.10 E-value=0.029 Score=46.57 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 356899999999999999998765
No 157
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.10 E-value=0.024 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|.|..|.|||||.+.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998765
No 158
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.07 E-value=0.029 Score=46.69 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|+|..|.|||||.+.+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998765
No 159
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.05 E-value=0.039 Score=49.47 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+|-++|++|.||||+++.+.+.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999998764
No 160
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.04 E-value=0.029 Score=46.92 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999998765
No 161
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.02 E-value=0.031 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
-.+++|.|+.|.|||||++.+...+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 47899999999999999999988764
No 162
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.94 E-value=0.032 Score=45.97 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|.|..|.|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998765
No 163
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.88 E-value=0.047 Score=48.81 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+|.++|.+|+||||++..+...+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999887543
No 164
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.83 E-value=0.044 Score=47.39 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...++|+|..|.|||||++.+...+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999987754
No 165
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.79 E-value=0.066 Score=45.99 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=29.3
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...|..+|..+-..-.++.|+|.+|+||||||..+...
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44566666544445689999999999999999988765
No 166
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.74 E-value=0.035 Score=53.59 Aligned_cols=47 Identities=15% Similarity=0.386 Sum_probs=35.5
Q ss_pred ccccccchHHHHHHHhccC------C-CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 182 QLAGVESRVEEIESLLGVK------S-KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~~~------~-~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.++|.+..++.+...+... . .....+-|+|..|+|||++|+++++.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688888787776655421 1 123578899999999999999999875
No 167
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.48 E-value=0.06 Score=47.84 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
...+++++|.+|.||||++..+...+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999887653
No 168
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.45 E-value=0.078 Score=48.93 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+|.|.|+.|.||||+|+++.+++.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999988754
No 169
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.44 E-value=0.057 Score=46.82 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=31.2
Q ss_pred cccchHHHHHHHhc-cCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 185 GVESRVEEIESLLG-VKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 185 g~~~~~~~l~~~l~-~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+...-...|..+|. .+-..-+++-|.|.+|+||||||..+....
T Consensus 43 ~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 43 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33444566666665 333335689999999999999999887653
No 170
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.36 E-value=0.076 Score=48.32 Aligned_cols=26 Identities=4% Similarity=0.132 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+|-+.|+.|.||||+|+++.+++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHH
Confidence 47888999999999999999999875
No 171
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.34 E-value=0.058 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+|.+.|+.|.||||+|+.+.+++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998876
No 172
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.33 E-value=0.066 Score=45.17 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=25.0
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~ 225 (233)
+++|.+.+. -.++++.|..|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 566666554 3588999999999999999987
No 173
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.29 E-value=0.038 Score=46.94 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|+|..|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 356899999999999999998764
No 174
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.26 E-value=0.048 Score=45.92 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999998765
No 175
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.26 E-value=0.039 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
...+++|+|..|.|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999876
No 176
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.23 E-value=0.073 Score=45.88 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+..+|+|+|.+|.|||||..++...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999998764
No 177
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.22 E-value=0.097 Score=46.65 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=31.7
Q ss_pred cccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 183 LAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 183 ~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..|.......|..++ .+-..-.++.|.|.+|+||||||..+...+
T Consensus 183 ~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 183 ITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 344544555666655 333335689999999999999999987754
No 178
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.15 E-value=0.053 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346899999999999999998764
No 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.13 E-value=0.092 Score=43.19 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.....|.++|..|+|||||...+++.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999998763
No 180
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.11 E-value=0.11 Score=42.66 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
....|+++|..|+|||||..++..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999998875
No 181
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.09 E-value=0.12 Score=45.98 Aligned_cols=45 Identities=24% Similarity=0.207 Sum_probs=31.3
Q ss_pred cccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 183 LAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 183 ~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..|...-...|..++ .+-....++-|.|.+|+||||||..+...+
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 445555566676666 333345688899999999999999887654
No 182
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.01 E-value=0.059 Score=45.81 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=28.2
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...|..+|..+-..-.++.|+|.+|+||||||..+....
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 345555564332335689999999999999999987653
No 183
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.01 E-value=0.074 Score=44.97 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=28.4
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...|..+|..+-..-.++-|+|.+|+||||||..+...
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555666533334578999999999999999988764
No 184
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.94 E-value=0.06 Score=46.69 Aligned_cols=23 Identities=39% Similarity=0.487 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|.|..|.|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999875
No 185
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.79 E-value=0.083 Score=45.97 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+++|+|..|.|||||.+.+...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35689999999999999999987754
No 186
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.78 E-value=0.054 Score=43.24 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+.|.|.|..|+||||||.++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357889999999999999998765
No 187
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.66 E-value=0.082 Score=45.82 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+++|.|..|.|||||.+.+...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999999987754
No 188
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.66 E-value=0.11 Score=45.05 Aligned_cols=58 Identities=17% Similarity=0.407 Sum_probs=37.7
Q ss_pred CcceEEEcCcccccccchHHHHHHHHhhC-C----CeEEEeCccCCCcchHHHHHHHHHhcCceEEEeecCCCCch
Q 043980 23 KKYEVFVSFRGEDTRDKFTSHLYSALSRQ-S----IQTFIDDQLNRGDEISQSLVNAIEASAISVIIFSESYTSSR 93 (233)
Q Consensus 23 ~~~dVFISy~~~D~~~~f~~~L~~~L~~~-g----i~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~ 93 (233)
.+..+=|. |+...+++.|...|..+ + +.+|-+. +.+.+.+++-++-|++++++|....
T Consensus 20 ~~i~l~i~----d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~---------e~~~~~~~~~~~dilli~e~~~~~~ 82 (373)
T 3fkq_A 20 MKIKVALL----DKDKEYLDRLTGVFNTKYADKLEVYSFTDE---------KNAIESVKEYRIDVLIAEEDFNIDK 82 (373)
T ss_dssp CCEEEEEE----CSCHHHHHHHHHHHHHHTTTTEEEEEESCH---------HHHHHHHHHHTCSEEEEETTCCCCG
T ss_pred ceEEEEEE----eCCHHHHHHHHHHHhhccCCceEEEEECCH---------HHHHHHHhcCCCCEEEEcchhhhhh
Confidence 44444453 33366899999998654 3 3344332 4566667777888999999997643
No 189
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.60 E-value=0.11 Score=47.56 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+|.+.|+.|.||||+|+.+...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 57899999999999999999987653
No 190
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.57 E-value=0.075 Score=45.88 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-..++|.|..|.|||||.+.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999998864
No 191
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.54 E-value=0.072 Score=46.48 Aligned_cols=24 Identities=38% Similarity=0.356 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 356899999999999999998875
No 192
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.43 E-value=0.074 Score=41.89 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..-|.|+|.+|+|||||...+.+
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45688999999999999998865
No 193
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.32 E-value=0.054 Score=46.94 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999999999875
No 194
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.32 E-value=0.056 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..+++|+|..|.|||||++.+...
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999998764
No 195
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.31 E-value=0.16 Score=43.62 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=32.5
Q ss_pred ccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 182 QLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+.|...-...|..++. +-..-.++.|.|.+|+||||||..+...+
T Consensus 25 ~~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 25 EVTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CCCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34555555666666653 32334688899999999999999887653
No 196
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.30 E-value=0.16 Score=45.33 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=32.4
Q ss_pred cccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 183 LAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 183 ~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..|.......|..++. +-....++-|.|.+|+||||||..+....
T Consensus 177 ~~gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 177 ITGVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CCSBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 4455555666666663 33345688899999999999999887654
No 197
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.27 E-value=0.11 Score=47.12 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=28.1
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 191 EEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+..+|..+-..-.+++|.|..|+|||||++.++...
T Consensus 268 ~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 268 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34555555433345789999999999999999988653
No 198
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.15 E-value=0.085 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.-.+++|.|..|.|||||.+.+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 356899999999999999998864
No 199
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.10 E-value=0.12 Score=43.54 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=25.0
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
++++...+. -.+++|.|..|+|||||.+.+..
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhcc
Confidence 555655554 24789999999999999998765
No 200
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.075 Score=47.69 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||++.+..-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4568999999999999999998763
No 201
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.03 E-value=0.087 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.+++|.|..|.|||||++.++..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998764
No 202
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.00 E-value=0.09 Score=46.87 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+-|.|.+|.||||++.++...+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78899999999999999988764
No 203
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.94 E-value=0.095 Score=45.48 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.+++|+|..|+|||||.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4789999999999999998864
No 204
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.93 E-value=0.094 Score=41.72 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~ 225 (233)
..-|.|+|.+|+|||||...+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999998875
No 205
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.84 E-value=0.083 Score=46.95 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~ 226 (233)
-++|+|..|.|||||.+.++.
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 399999999999999999875
No 206
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.78 E-value=0.12 Score=45.75 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+++|.|..|.|||||.+.+...+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999988765
No 207
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.74 E-value=0.14 Score=45.59 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-..++|.|..|.|||||.+.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345789999999999999999988754
No 208
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.72 E-value=0.082 Score=48.37 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.+++|.|..|.|||||++.++.-
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998753
No 209
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=91.69 E-value=0.23 Score=43.29 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=22.7
Q ss_pred CCeEEEEEE-cCCCChHHHHHHHHHHHHh
Q 043980 202 KDVYALGIW-GIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 202 ~~~~~i~i~-G~gGiGKTtla~~v~~~~~ 229 (233)
...++|+|+ |-||+||||+|..+...+.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 347888888 8899999999998876543
No 210
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.59 E-value=0.1 Score=47.68 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.+...
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998753
No 211
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.53 E-value=0.072 Score=51.09 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=35.0
Q ss_pred CccccccchHHHHHHHhccC-----------CCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 181 NQLAGVESRVEEIESLLGVK-----------SKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~-----------~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+.|.++.+++|.+.+..- ....+-+-++|.+|.|||.||+++.+...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 45678887777777654321 11234467899999999999999998644
No 212
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.36 E-value=0.11 Score=48.21 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.+++|.|..|.|||||.+.+...
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998764
No 213
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.30 E-value=0.16 Score=38.15 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+..|+|..|.|||||..+++--
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47789999999999999998654
No 214
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.29 E-value=0.079 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..+++|+|..|.|||||.+.+..-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999987654
No 215
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.23 E-value=0.16 Score=44.15 Aligned_cols=44 Identities=25% Similarity=0.187 Sum_probs=30.7
Q ss_pred cccchHHHHHHHhc-cCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 185 GVESRVEEIESLLG-VKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 185 g~~~~~~~l~~~l~-~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+...-...|..+|. .+-..-.++-|.|.+|+||||||..+....
T Consensus 54 ~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 54 VVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 33444566767665 232234678889999999999999877653
No 216
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.17 E-value=0.12 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+++|.|..|.|||||.+.+..-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 57999999999999999998753
No 217
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.05 E-value=0.064 Score=45.58 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.+++|.|..|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4889999999999999998754
No 218
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=91.04 E-value=0.12 Score=43.03 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=19.7
Q ss_pred eEEEEEEc---CCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWG---IGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G---~gGiGKTtla~~v~~~~ 228 (233)
.++|+|++ -||+||||+|..+...+
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 45667775 89999999999887654
No 219
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.01 E-value=0.057 Score=50.04 Aligned_cols=48 Identities=17% Similarity=0.019 Sum_probs=31.7
Q ss_pred CCccccccchHHHHHHHhccCCCC---------eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 180 KNQLAGVESRVEEIESLLGVKSKD---------VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 180 ~~~~~g~~~~~~~l~~~l~~~~~~---------~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+.++|.+.-++.+...|..+... -.-+-++|.+|+|||+||+++++.
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 467889887655554433322100 013668999999999999988764
No 220
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.99 E-value=1.4 Score=39.08 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
...-|+++|.+|+|||||...+..
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~ 217 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLG 217 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT
T ss_pred ccceeEEecCCCCCHHHHHHHHhC
Confidence 456789999999999999998874
No 221
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.87 E-value=0.13 Score=47.71 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.+..-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3568999999999999999988753
No 222
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.86 E-value=0.11 Score=46.11 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 043980 207 LGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 207 i~i~G~gGiGKTtla~~v~~~ 227 (233)
|+|+|..|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999998763
No 223
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.55 E-value=0.22 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.++.|.|.+|.||||++.++...+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 577899999999999999987754
No 224
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.49 E-value=0.29 Score=41.06 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=21.9
Q ss_pred CCeEEEEEEcC-CCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWGI-GGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G~-gGiGKTtla~~v~~~~ 228 (233)
...++|.|.|. ||+||||+|..+...+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~l 129 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVI 129 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence 34689999985 8999999999877654
No 225
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.44 E-value=0.14 Score=47.45 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||.+.+...
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3468999999999999999987653
No 226
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.40 E-value=0.15 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=19.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v 224 (233)
.-.+++|.|..|.|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3578999999999999999995
No 227
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.25 E-value=0.16 Score=44.11 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
+...|+|+|.+|+|||||.+.+.+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHC
Confidence 467799999999999999998765
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.15 E-value=0.29 Score=40.35 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+++|.+.+.... ..++++|.+|+|||||...+...
T Consensus 88 i~~L~~~l~~~~---~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 88 KVLLKKLSFDRL---ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp HHHHHHHCCCTT---CEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh---hheEEeCCCCCCHHHHHHHHhcc
Confidence 455655554211 46889999999999999988753
No 229
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.04 E-value=0.12 Score=44.73 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~ 226 (233)
-|+|+|..|+|||||...++.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 468999999999999999765
No 230
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.93 E-value=0.19 Score=45.15 Aligned_cols=24 Identities=29% Similarity=0.721 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 043980 206 ALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.++|+|..|+|||||++.+...+.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhh
Confidence 588999999999999999887654
No 231
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.91 E-value=0.23 Score=44.70 Aligned_cols=38 Identities=8% Similarity=-0.068 Sum_probs=27.3
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...|..++. +-..-.++-|.|.+|+||||||..+....
T Consensus 229 ~~~LD~~lg-Gl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 229 CTGINDKTL-GARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTHHHHHC-CCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhc-ccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 334444453 33345688899999999999999987764
No 232
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.74 E-value=0.18 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-.+++|+|..|.|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999988653
No 233
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.65 E-value=0.18 Score=46.40 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|+|..|.|||||.+.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999998765
No 234
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.62 E-value=0.4 Score=39.63 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=21.6
Q ss_pred CCeEEEEEEc-CCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWG-IGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G-~gGiGKTtla~~v~~~~ 228 (233)
...++|.|.+ .||+||||+|..+...+
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~l 107 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAY 107 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 3468899996 48999999999877654
No 235
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=89.62 E-value=0.2 Score=43.08 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
....++++|.+|+|||||...+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999988754
No 236
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.14 E-value=0.2 Score=45.58 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++|.|..|.||||+.+++..-+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999886643
No 237
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=89.14 E-value=0.28 Score=40.93 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.--|.|+|.+|+|||||...+.+.
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCChHHHHHHHHhC
Confidence 456789999999999999887653
No 238
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=88.84 E-value=0.47 Score=41.94 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+..-++|+|.+|+|||||.+.+...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999998653
No 239
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.82 E-value=0.29 Score=43.13 Aligned_cols=25 Identities=24% Similarity=0.026 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+.++|+|..|.|||||++.+.+.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4688999999999999999988764
No 240
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.57 E-value=0.19 Score=46.44 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|+|..|.|||||.+.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998765
No 241
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.31 E-value=0.21 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
...+++|+|..|.|||||++.+..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 347899999999999999998764
No 242
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=88.20 E-value=0.25 Score=43.08 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
....|.|-|.-|+||||+++.+.+.+.
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999987643
No 243
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=88.16 E-value=0.5 Score=43.73 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=24.1
Q ss_pred hccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 197 LGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 197 l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
|..-...+.+|+|+|.+|+|||||...+..
T Consensus 31 L~~i~~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 31 LSAITQPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp HHTCCSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred HHhccCCCcEEEEECCCCCCHHHHHHhHcC
Confidence 333345688999999999999999988765
No 244
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=88.00 E-value=0.21 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
...++|+|.+|.|||||.+.+..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg 179 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTR 179 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHc
Confidence 45689999999999999998754
No 245
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=87.97 E-value=0.38 Score=41.89 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=32.9
Q ss_pred CccccccchHHHHHHHhcc-CCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGV-KSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~-~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..++|....++++.+.+.. ...+.. +-|.|..|+|||++|+.++..
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 3567777777777665543 222333 478999999999999999874
No 246
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.60 E-value=0.18 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|+|..|.|||||.+.+..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 46899999999999999987654
No 247
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=87.56 E-value=0.25 Score=42.05 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.0
Q ss_pred EEEEEEcCCCChHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~ 225 (233)
--|.|+|.+|+|||||...+.
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~ 186 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLK 186 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTC
T ss_pred ceEEEECCCCccHHHHHHHHh
Confidence 357899999999999998764
No 248
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.43 E-value=0.33 Score=47.56 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|+|..|.|||||.+.+..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999999999874
No 249
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.40 E-value=0.22 Score=45.87 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|+|..|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999997654
No 250
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=87.29 E-value=0.15 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+++|+|..|.|||||.++++--
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999998643
No 251
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=87.17 E-value=0.33 Score=42.08 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCChHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v 224 (233)
..-|-|.|.||.||||+++.+
T Consensus 33 ~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHH
Confidence 445678899999999999975
No 252
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=86.96 E-value=0.83 Score=40.73 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHHhcc---CCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLGV---KSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~~---~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+.+.++|.. ....+.+|+|+|....||+||...++..
T Consensus 50 ~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 50 ETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp HHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4555555554 2346999999999999999999999875
No 253
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=86.87 E-value=0.64 Score=43.01 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=26.5
Q ss_pred cchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 187 ESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+.+...+...+. -+.+-|.|.+|.||||++..+...+
T Consensus 152 ~~Q~~Ai~~~l~-----~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 152 NWQKVAAAVALT-----RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp CHHHHHHHHHHT-----BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 344555554442 3578899999999999998876654
No 254
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=86.26 E-value=0.37 Score=43.73 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.--|+++|.+|+|||||...+.+
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999998765
No 255
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=86.17 E-value=0.3 Score=42.57 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=14.8
Q ss_pred CCeEEEEEE-cCCCChHHHHHHHHHHHHh
Q 043980 202 KDVYALGIW-GIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 202 ~~~~~i~i~-G~gGiGKTtla~~v~~~~~ 229 (233)
...++|+|+ |-||+||||+|..+...+.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALR 137 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHH
Confidence 346788888 8899999999998876553
No 256
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=86.05 E-value=0.42 Score=41.35 Aligned_cols=47 Identities=28% Similarity=0.335 Sum_probs=32.5
Q ss_pred CccccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 181 NQLAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 181 ~~~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
..++|....+.++...+..-...-..+-|.|..|.||+++|+.+++.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHh
Confidence 45778777777766654331111223558899999999999999874
No 257
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=85.70 E-value=0.52 Score=40.06 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+-+.|.|..|+||||+|.++..+
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 57889999999999999988764
No 258
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=85.59 E-value=0.45 Score=44.07 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.+..++|+|..|.|||||.+.+..
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHS
T ss_pred cCCeEEEECCCCChHHHHHHHHhC
Confidence 356799999999999999998864
No 259
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=85.37 E-value=0.091 Score=40.69 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=19.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~ 225 (233)
+...-|.|+|..|+|||||...+.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 345678899999999999987654
No 260
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.29 E-value=0.33 Score=47.51 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-.+++|.|..|.|||||.+.+..
T Consensus 699 GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998865
No 261
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=84.77 E-value=0.63 Score=40.27 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=27.5
Q ss_pred ccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 184 AGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 184 ~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.|.+.-++.+.+++. .+.+.++|..|+|||||..++.+.
T Consensus 147 ~gi~~L~~~I~~~~~-----~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 147 IGMAKVMEAINRYRE-----GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp BTHHHHHHHHHHHHT-----TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcc-----cCcEEEEcCCCCchHHHHHHHHhh
Confidence 344444455544432 135789999999999999999876
No 262
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.52 E-value=0.85 Score=42.25 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=24.6
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+.+.+...+. ..+.-|.|.+|.||||++..+...+
T Consensus 184 ~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 184 SQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp HHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44555555443 2356789999999999888776553
No 263
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.07 E-value=0.74 Score=48.36 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHHHHHHhc-cCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 190 VEEIESLLG-VKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~-~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...|..+|. .+-...+.+-|+|.+|+|||+||.++...
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344666666 33234578899999999999999998765
No 264
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=84.01 E-value=0.65 Score=41.53 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-|+|+|.+|+|||||...+.+.
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3899999999999999998764
No 265
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=83.97 E-value=0.51 Score=47.61 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
...+++|+|..|.|||||++.+..
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 266
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=83.96 E-value=0.56 Score=40.18 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
....|+|+|..|+|||||..++..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999876
No 267
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=83.94 E-value=0.73 Score=40.58 Aligned_cols=26 Identities=27% Similarity=0.106 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
-+-++|.|-.|+|||+|+..+.+.+.
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHHHh
Confidence 35678999999999999999988653
No 268
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=83.85 E-value=0.46 Score=40.78 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
+.-|+|+|.+++|||||..++.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~ 180 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSS 180 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEE
T ss_pred cCeeeeeCCCCCCHHHHHHHHHc
Confidence 34589999999999999987654
No 269
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=83.59 E-value=1.8 Score=38.59 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=30.5
Q ss_pred chHHHHHHHhcc---CCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 188 SRVEEIESLLGV---KSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 188 ~~~~~l~~~l~~---~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-..+.+..+|.. ....+.+|+|+|..+.|||+|...+++-+
T Consensus 48 ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~~ 91 (457)
T 4ido_A 48 LDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (457)
T ss_dssp ECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHHh
Confidence 345556555554 23469999999999999999999877543
No 270
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=83.46 E-value=0.38 Score=45.01 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.5
Q ss_pred eEEEEEEcCCCChHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v 224 (233)
-.+++|+|..|.|||||.+.+
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTT
T ss_pred CCEEEEEeeCCCCHHHHHHHH
Confidence 368999999999999999764
No 271
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=82.87 E-value=1.1 Score=39.81 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
...++..|.|.+|.||||+.....+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3578999999999999999987653
No 272
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=82.86 E-value=1.1 Score=41.71 Aligned_cols=35 Identities=31% Similarity=0.257 Sum_probs=21.9
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHH-HHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARA-IFD 226 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~-v~~ 226 (233)
++.+.+...|.. . .+.-|.|++|.|||+.+.+ |++
T Consensus 193 ~Q~~AV~~al~~--~--~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 193 SQKEAVLFALSQ--K--ELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp HHHHHHHHHHHC--S--SEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--C--CceEEECCCCCCHHHHHHHHHHH
Confidence 445566555542 1 2556899999999865544 443
No 273
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=82.71 E-value=0.69 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.016 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..+++|.|..|.|||||.+.+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 36899999999999999998765
No 274
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=82.59 E-value=0.83 Score=39.48 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=27.1
Q ss_pred ccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 184 AGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 184 ~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.|.+.-.+.+.++.. -..+.++|..|+|||||..++.+.
T Consensus 145 ~gi~~L~~~l~~~~~-----~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 145 QGIAELADAIEYYRG-----GKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTHHHHHHHHHHHHT-----TSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred cCHHHHHhhhhhhcc-----cceEEEecCCCCChhHHHHHHHhh
Confidence 344444444444332 135789999999999999999886
No 275
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.50 E-value=0.88 Score=47.07 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=33.3
Q ss_pred cccccchHHHHHHHhc-cCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 183 LAGVESRVEEIESLLG-VKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 183 ~~g~~~~~~~l~~~l~-~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..+...-..+|..+|. .+-..-.++-|.|.+|+||||||..+....
T Consensus 710 ~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 710 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 3444455667777775 333345788999999999999999987754
No 276
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.41 E-value=0.98 Score=39.03 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-+.|.|..|.||||+++.+..+.
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999887653
No 277
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=81.98 E-value=0.72 Score=42.20 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....|+|+|..|+|||||..++...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999998753
No 278
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=81.92 E-value=0.77 Score=44.00 Aligned_cols=24 Identities=25% Similarity=0.008 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..++++|.|..|.|||||.+.+..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 357899999999999999998765
No 279
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=81.79 E-value=0.64 Score=43.45 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCChHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIA 221 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla 221 (233)
-.+++|+|..|.|||||.
T Consensus 44 Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 44 GKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TSEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHh
Confidence 468999999999999996
No 280
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=81.46 E-value=0.9 Score=40.58 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..-|.|+|.+|+|||||...+..
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~ 344 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKL 344 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Confidence 34578999999999999998865
No 281
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=81.44 E-value=0.69 Score=39.26 Aligned_cols=22 Identities=27% Similarity=0.435 Sum_probs=19.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~ 226 (233)
+-+-|.|..|+||||+|.++..
T Consensus 148 ~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5678999999999999988754
No 282
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=81.10 E-value=5.2 Score=30.36 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=46.9
Q ss_pred cchHHHHHHHHhhCCCeEEEeCc--cCCCcchHHHHHHHHHhcCceEEEeec---CCCCchhhHHHHHHHHHh
Q 043980 38 DKFTSHLYSALSRQSIQTFIDDQ--LNRGDEISQSLVNAIEASAISVIIFSE---SYTSSRWCVDELVKILEC 105 (233)
Q Consensus 38 ~~f~~~L~~~L~~~gi~~~~d~~--~~~G~~~~~~i~~~i~~s~~~i~v~S~---~y~~S~wc~~El~~~~~~ 105 (233)
..+...+.+.|++.|+.++.-.+ ......|...-.++|++|+++|++++| .+.. .=...|+-.+...
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D-~GTafEiGyA~Al 97 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPD-CGTAFEVGCAAAL 97 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCC-CcHHHHHHHHHHC
Confidence 45889999999999999887431 112233444447899999999999996 3433 3466688776643
No 283
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.04 E-value=0.44 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
...|||+|..|.|||||++.+++
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 46799999999999999998865
No 284
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.95 E-value=1.2 Score=46.91 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=34.6
Q ss_pred ccccccchHHHHHHHhc-cCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 182 QLAGVESRVEEIESLLG-VKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 182 ~~~g~~~~~~~l~~~l~-~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
...+...-...|..+|. .+-..-.++-|.|.+|+||||||..+....
T Consensus 360 ~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34455555677777776 333345789999999999999999987754
No 285
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=80.64 E-value=1.4 Score=42.21 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=24.5
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+.+.+...+. ..+.-|.|.+|.||||++.++...+
T Consensus 360 ~Q~~Av~~~l~-----~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 360 SQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp HHHHHHHHHHT-----SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-----CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34445554443 1356799999999999888776653
No 286
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=80.30 E-value=1.1 Score=42.24 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
+...|+|+|..|.|||||..++..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg 91 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIG 91 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356789999999999999999875
No 287
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=80.16 E-value=0.65 Score=39.73 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=20.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
...-|+|+|.+|+|||||..++..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHhC
Confidence 356799999999999999988754
No 288
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=79.94 E-value=0.81 Score=46.15 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-..++|+|..|.|||||++.+..
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998754
No 289
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=79.57 E-value=1.3 Score=39.91 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-+-++|.|-.|+|||+|+..+.+.+
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCeeeeecCCCCChHHHHHHHHHhh
Confidence 3568999999999999999988875
No 290
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=79.32 E-value=1.3 Score=45.94 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=32.5
Q ss_pred ccccchHHHHHHHhc-cCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 184 AGVESRVEEIESLLG-VKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 184 ~g~~~~~~~l~~~l~-~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+...-...|..+|. .+-..-+++-|+|.+|+||||||..+....
T Consensus 362 ~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 362 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp CEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344445666777775 333345789999999999999999987653
No 291
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=79.12 E-value=3.5 Score=34.12 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=21.4
Q ss_pred CCeEEEEEEc-CCCChHHHHHHHHHHHH
Q 043980 202 KDVYALGIWG-IGGIGKTKIARAIFDKI 228 (233)
Q Consensus 202 ~~~~~i~i~G-~gGiGKTtla~~v~~~~ 228 (233)
...++|.|++ -||+||||+|..+...+
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~l 117 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVI 117 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 3467888886 58999999999887654
No 292
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=78.89 E-value=1 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
-..++|+|..|.|||||++.+..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTT
T ss_pred CcEEEEEecCCCcHHHHHHHhcc
Confidence 46899999999999999998754
No 293
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=78.72 E-value=1.4 Score=40.23 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~ 225 (233)
.+|-|+|.|..+-|||||+.++.
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999999999874
No 294
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=78.66 E-value=0.69 Score=45.28 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=18.4
Q ss_pred EEEEEEcCCCChHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v 224 (233)
.+++|.|..|.|||||++.+
T Consensus 669 eivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 669 VLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 57999999999999999984
No 295
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=78.65 E-value=1.4 Score=39.80 Aligned_cols=26 Identities=27% Similarity=0.555 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
-+-++|.|-.|+|||+|+..+.+.+.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a 190 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIA 190 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTT
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHH
Confidence 35689999999999999999888753
No 296
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=78.17 E-value=0.65 Score=44.75 Aligned_cols=22 Identities=23% Similarity=0.506 Sum_probs=19.3
Q ss_pred EEEEEEcCCCChHHHHHHH-HHH
Q 043980 205 YALGIWGIGGIGKTKIARA-IFD 226 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~-v~~ 226 (233)
.+++|.|..|.|||||++. ++.
T Consensus 524 eiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 524 VMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp SEEEEECCTTSSHHHHCCCCCHH
T ss_pred CEEEEEcCCCcCHHHHHHHHHHH
Confidence 5899999999999999996 554
No 297
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=78.14 E-value=1.1 Score=43.68 Aligned_cols=24 Identities=17% Similarity=0.021 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
...+++|.|..|.|||||.+.+..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 357899999999999999998753
No 298
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=77.89 E-value=2 Score=41.16 Aligned_cols=35 Identities=26% Similarity=0.206 Sum_probs=23.6
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.+.+.+...+. ..+.-|.|.+|.|||+++..+...
T Consensus 364 ~Q~~Av~~~l~-----~~~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 364 SQSNAVSHVLQ-----RPLSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp HHHHHHHHHTT-----CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHHH
Confidence 44555555443 235678999999999987766543
No 299
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=77.88 E-value=1.3 Score=35.32 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=16.5
Q ss_pred EEEEEEcCCCChHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v 224 (233)
+.+.|.|..|.||||+....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 57889999999999876643
No 300
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=77.62 E-value=0.95 Score=40.62 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-|+|+|.+|+|||||..++.+.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999987553
No 301
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=77.33 E-value=1.2 Score=43.33 Aligned_cols=22 Identities=23% Similarity=0.015 Sum_probs=20.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v 224 (233)
...+++|.|..|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3578999999999999999987
No 302
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=76.82 E-value=2.8 Score=38.59 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
....-|+|+|..+.|||||...+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Confidence 4567799999999999999998754
No 303
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=76.28 E-value=0.64 Score=45.37 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=18.3
Q ss_pred EEEEEEcCCCChHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v 224 (233)
.+++|.|..|.|||||++.+
T Consensus 651 eiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 651 TFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SEEECCBCTTSSHHHHHTTT
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 57999999999999999984
No 304
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=76.17 E-value=1.4 Score=43.34 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCChHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v 224 (233)
.++++|.|..|.|||||.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 479999999999999999987
No 305
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=75.55 E-value=1.6 Score=37.88 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
+..-|+|+|.+.+|||||-.++-+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~ 94 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTG 94 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999988765
No 306
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=75.19 E-value=1.5 Score=39.16 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
...-|+|+|..|.|||||...+..+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3455679999999999999988654
No 307
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=73.78 E-value=2.6 Score=38.51 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..++-+.|.||+||||+|..+.-.+
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l 351 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRL 351 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCChhhHHHHHHHHH
Confidence 3455567999999999998877654
No 308
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=73.56 E-value=0.86 Score=41.01 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-.|+|+|.+|+|||||..++.+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCC
Confidence 46889999999999999998775
No 309
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=72.58 E-value=1.9 Score=39.85 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=18.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIF 225 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~ 225 (233)
..-|+|+|..|+|||||..++.
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll 188 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLL 188 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHH
T ss_pred ceEEEEEECCCCCHHHHHHHHH
Confidence 4457799999999999999875
No 310
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=71.91 E-value=5.9 Score=31.57 Aligned_cols=37 Identities=27% Similarity=0.171 Sum_probs=24.8
Q ss_pred ccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 186 VESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 186 ~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+..+.+.+..++... + +-|+|..|.|||.+|..+...
T Consensus 95 ~~~Q~~ai~~~~~~~----~-~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 95 RDYQEKALERWLVDK----R-GCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp CHHHHHHHHHHTTTS----E-EEEEESSSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCC----C-EEEEeCCCCCHHHHHHHHHHH
Confidence 344455555555421 2 567899999999999877654
No 311
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=70.09 E-value=2.2 Score=41.54 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=16.4
Q ss_pred EEEEEEcCCCChHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIAR 222 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~ 222 (233)
.+++|.|..|.|||||+.
T Consensus 611 eiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 611 VFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEEccCCCChhhhHH
Confidence 579999999999999984
No 312
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=69.90 E-value=3 Score=38.39 Aligned_cols=24 Identities=29% Similarity=0.137 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+-++|.|-.|+|||+|+..+.+.
T Consensus 232 Gqr~~Ifgg~g~GKT~L~~~ia~~ 255 (600)
T 3vr4_A 232 GGAAAVPGPFGAGKTVVQHQIAKW 255 (600)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEeeecCCCccHHHHHHHHHhc
Confidence 456899999999999999998875
No 313
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=69.65 E-value=16 Score=27.50 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=51.2
Q ss_pred CCCcceEEEcCccc-cc-ccchHHHHHHHHhhCCCeEEEeCccC-----CCc-------chHHHHHHHHHhcCceEEEee
Q 043980 21 NNKKYEVFVSFRGE-DT-RDKFTSHLYSALSRQSIQTFIDDQLN-----RGD-------EISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 21 ~~~~~dVFISy~~~-D~-~~~f~~~L~~~L~~~gi~~~~d~~~~-----~G~-------~~~~~i~~~i~~s~~~i~v~S 86 (233)
.+++..|||+=.-. +. .......+.+.|++.| .|+.+.... .|. .+...-.+.|++|+++|++++
T Consensus 8 ~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~ 86 (165)
T 2khz_A 8 EQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT 86 (165)
T ss_dssp SCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC
Confidence 55667899973322 11 1224588999999999 876543221 221 122333578999999999987
Q ss_pred cCCCCchhhHHHHHHHHHh
Q 043980 87 ESYTSSRWCVDELVKILEC 105 (233)
Q Consensus 87 ~~y~~S~wc~~El~~~~~~ 105 (233)
-.+.=+..|+-.+...
T Consensus 87 ---~~d~Gt~~EiGyA~al 102 (165)
T 2khz_A 87 ---QPSLGVGYELGRAVAL 102 (165)
T ss_dssp ---SCCHHHHHHHHHHHHT
T ss_pred ---CCCCCHHHHHHHHHHC
Confidence 3455577788877643
No 314
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=69.63 E-value=1.8 Score=38.73 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+-++|.|-.|+|||+|+..+.++.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~ 171 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHC
T ss_pred CEEEEecCCCCCchHHHHHHHHHH
Confidence 456888999999999999888763
No 315
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=69.47 E-value=2.1 Score=38.34 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+-++|.|-.|+|||+|+..+.++.
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~ 175 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA 175 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH
Confidence 346889999999999999988764
No 316
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=68.66 E-value=2.9 Score=38.36 Aligned_cols=24 Identities=21% Similarity=0.059 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+-++|.|-.|+|||+|+..+.+.
T Consensus 221 Gqr~~Ifg~~g~GKT~l~~~ia~~ 244 (578)
T 3gqb_A 221 GGTAAIPGPFGSGKSVTQQSLAKW 244 (578)
T ss_dssp TCEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCEEeeeCCCCccHHHHHHHHHhc
Confidence 356899999999999999998875
No 317
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=68.43 E-value=2.2 Score=38.20 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+-++|.|-.|+|||+|+..+.++.
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~ 176 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQA 176 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 456788999999999999888763
No 318
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=68.41 E-value=3.3 Score=36.84 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.....|+|+|..+.|||||...+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 3467789999999999999988753
No 319
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=68.36 E-value=3.6 Score=34.69 Aligned_cols=26 Identities=15% Similarity=0.035 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
..+|.+-|+-|.||+|.++.+++.+.
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ld 111 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMN 111 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 56888899999999999999988653
No 320
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=68.31 E-value=1.4 Score=39.73 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~ 226 (233)
+..|+|..|.|||||..+++-
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 788999999999999999854
No 321
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=67.99 E-value=0.92 Score=40.09 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=20.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 202 KDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 202 ~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
....-|+|+|..|+|||||+.++.+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~ 56 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVG 56 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHc
Confidence 3467899999999999999886543
No 322
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=67.20 E-value=2.6 Score=38.63 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+-++|.|-.|+|||+|+..+.+.
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc
Confidence 356899999999999999998764
No 323
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=66.06 E-value=4.2 Score=35.46 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=18.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-+.|.|..|.|||++++.+..+
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~ 76 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYT 76 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 44678899999999998876654
No 324
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=65.63 E-value=7.2 Score=28.79 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=39.5
Q ss_pred EEEcCcccccccchHHHHHHHHhhCCCeEEEeC-----------------ccCCC-cc-hHHHHHHHHHhcCceEEEeec
Q 043980 27 VFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDD-----------------QLNRG-DE-ISQSLVNAIEASAISVIIFSE 87 (233)
Q Consensus 27 VFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~-----------------~~~~G-~~-~~~~i~~~i~~s~~~i~v~S~ 87 (233)
||||.+..| +.-+-.++..|.+.|++++-.. +..-| +. -.++|.+.|.+-.+-++|.++
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998876 3345567778888888876221 11112 10 003577788888888888888
Q ss_pred CCC
Q 043980 88 SYT 90 (233)
Q Consensus 88 ~y~ 90 (233)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 325
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.90 E-value=3.8 Score=44.43 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 206 ALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
-+.+.|.+|+|||++++.+.+.+..
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~ 671 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGR 671 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTC
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCC
Confidence 4457899999999999999987544
No 326
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=62.98 E-value=3.2 Score=39.93 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCChHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARA 223 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~ 223 (233)
-+++.|.|..|.||||||.-
T Consensus 36 ~~l~viTGvSGSGKSSLafd 55 (842)
T 2vf7_A 36 DALVVFTGVSGSGKSSLAFG 55 (842)
T ss_dssp SSEEEEESSTTSSHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46889999999999999974
No 327
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=62.39 E-value=41 Score=25.34 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=45.3
Q ss_pred cchHHHHHHHHhhC--CCeEEEeC-cc----CCCc----chHHHHHHHHHhcCceEEEeecCCCCchhhHHHHHHHHHh
Q 043980 38 DKFTSHLYSALSRQ--SIQTFIDD-QL----NRGD----EISQSLVNAIEASAISVIIFSESYTSSRWCVDELVKILEC 105 (233)
Q Consensus 38 ~~f~~~L~~~L~~~--gi~~~~d~-~~----~~G~----~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~ 105 (233)
..+...+.++|+.+ |+.+|.-. +- .++. .+...=.++|.+|+++|+++. ....+.-+..|+-.+...
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~ 96 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK 96 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC
Confidence 44778899999875 88888633 11 1122 233444567999999999995 334567788898877653
No 328
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=62.31 E-value=7.3 Score=35.12 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=29.2
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
+-++..++........+|.+-||-|.||+|.++.++..+..
T Consensus 29 L~~lQ~~~~~~~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~p 69 (500)
T 3czp_A 29 LLEAQFELKQQARFPVIILINGIEGAGKGETVKLLNEWMDP 69 (500)
T ss_dssp HHHHHHHHHHHCCCCEEEEEEECTTSSHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCCCCHHHHHHHHHHhcCc
Confidence 44444444442334577888899999999999999987643
No 329
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=61.27 E-value=4.2 Score=36.89 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.4
Q ss_pred eEEEEEEcCCCChHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIAR 222 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~ 222 (233)
-.++.+.|..|.|||||+.
T Consensus 213 g~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 213 GDVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp CCEEEEECCTTSSHHHHHC
T ss_pred CCEEEEEccCCcchhhhhh
Confidence 3578889999999999975
No 330
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=61.08 E-value=4.3 Score=36.92 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.9
Q ss_pred EEEEEEcCCCChHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIAR 222 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~ 222 (233)
.++.+.|..|.|||||+.
T Consensus 236 ~~~~ffGlSGtGKTTLs~ 253 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLST 253 (532)
T ss_dssp SEEEEECCTTSSHHHHHC
T ss_pred eEEEEEecCCCCHHHHhh
Confidence 578889999999999984
No 331
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=60.20 E-value=4.6 Score=36.74 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=16.0
Q ss_pred EEEEEEcCCCChHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIAR 222 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~ 222 (233)
.++.+.|..|.|||||+.
T Consensus 242 ~~~lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 242 DVAVFFGLSGTGKTTLST 259 (540)
T ss_dssp CEEEEECSTTSSHHHHHC
T ss_pred CEEEEEccCCCCHHHHhc
Confidence 578889999999999984
No 332
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=60.03 E-value=5 Score=36.30 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=18.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-+.|.|..|.||||+.+.+.-.
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34678899999999999987653
No 333
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=59.72 E-value=5.4 Score=34.19 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.3
Q ss_pred eEEEEEEcCCCChHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARA 223 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~ 223 (233)
..-+-+.|.|+.||||+.+.
T Consensus 32 ~~klLlLG~geSGKST~~KQ 51 (353)
T 1cip_A 32 EVKLLLLGAGESGKSTIVKQ 51 (353)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred cceEEEEcCCCCCchhHHHH
Confidence 34456789999999999886
No 334
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=59.16 E-value=30 Score=25.83 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=42.1
Q ss_pred cchHHHHHHHHhhCCCeEEEeC----cc-CCCc-------chHHHHHHHHHhcCceEEEeecCCCCchhhHHHHHHHHHh
Q 043980 38 DKFTSHLYSALSRQSIQTFIDD----QL-NRGD-------EISQSLVNAIEASAISVIIFSESYTSSRWCVDELVKILEC 105 (233)
Q Consensus 38 ~~f~~~L~~~L~~~gi~~~~d~----~~-~~G~-------~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~ 105 (233)
..+...+.+.|++.| .|+-.. ++ ..|+ .+...-.++|++|+++|++++ ..|.=...|+-.+...
T Consensus 18 ~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~al 93 (152)
T 4fyk_A 18 QALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVAL 93 (152)
T ss_dssp HHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHc
Confidence 356789999999999 675322 11 1222 144555678999999999988 4455566688777643
No 335
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=59.05 E-value=5.3 Score=43.29 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=18.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+-+-++|.+|.|||++|+.+...
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHhc
Confidence 45568999999999999776553
No 336
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=58.50 E-value=4.2 Score=39.80 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.4
Q ss_pred EEEEEEcCCCChHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARA 223 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~ 223 (233)
+++.|.|..|.||++||--
T Consensus 47 ~lvv~tG~SGSGKSSLafd 65 (993)
T 2ygr_A 47 ALIVFTGLSGSGKSSLAFD 65 (993)
T ss_dssp SEEEEEESTTSSHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 6899999999999999974
No 337
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=58.44 E-value=4.3 Score=39.68 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=17.3
Q ss_pred EEEEEEcCCCChHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARA 223 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~ 223 (233)
+++.|.|..|.||++||--
T Consensus 45 ~lvv~tG~SGSGKSSLafd 63 (972)
T 2r6f_A 45 KLVVLTGLSGSGKSSLAFD 63 (972)
T ss_dssp SEEEEEESTTSSHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 6899999999999999974
No 338
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=58.17 E-value=7 Score=37.15 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=23.4
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v 224 (233)
.+.+.+...+.. ...+.|+|..|.||||+...+
T Consensus 97 ~q~~~i~~~l~~----~~~vii~gpTGSGKTtllp~l 129 (773)
T 2xau_A 97 AQRDEFLKLYQN----NQIMVFVGETGSGKTTQIPQF 129 (773)
T ss_dssp GGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHH
Confidence 345566665542 347889999999999966654
No 339
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=57.93 E-value=7.9 Score=33.84 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=16.7
Q ss_pred eEEEEEEcCCCChHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v 224 (233)
..-+-+.|.|..||||+.+.+
T Consensus 40 ~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 40 THRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp EEEEEEEESTTSSHHHHHHHH
T ss_pred cceEEEecCCCCchhhHHHHH
Confidence 344567799999999999863
No 340
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=57.91 E-value=4.3 Score=36.91 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.2
Q ss_pred EEEEEEcCCCChHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARA 223 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~ 223 (233)
.+..+.|..|.|||||+..
T Consensus 226 ~~~~ffGlSGtGKTtLs~~ 244 (529)
T 1j3b_A 226 DVAVFFGLSGTGKTTLSTD 244 (529)
T ss_dssp CEEEEEECTTSCHHHHTCB
T ss_pred cEEEEEccccCChhhHhhc
Confidence 5778889999999999853
No 341
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=56.74 E-value=5 Score=36.15 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=28.8
Q ss_pred cccccchHHHHHHHhccCCCCeE---EEEEEcCCCChHHHHHHHHHH
Q 043980 183 LAGVESRVEEIESLLGVKSKDVY---ALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 183 ~~g~~~~~~~l~~~l~~~~~~~~---~i~i~G~gGiGKTtla~~v~~ 226 (233)
++|.+.-++.+.-.|-.+....+ -|-|.|.+|+ ||+||+.++.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~ 260 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLD 260 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHH
Confidence 89988765555554543321111 2568899999 9999999933
No 342
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=55.75 E-value=5.8 Score=35.89 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=24.5
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHH-HHHHHHHh
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIA-RAIFDKIS 229 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla-~~v~~~~~ 229 (233)
++.+..++-.+. -+-++|.|-.|+|||+|| ..+.|+..
T Consensus 150 iraID~l~Pigr--GQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 150 IKAVDSLVPIGR--GQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CHHHHHHSCCBT--TCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred ceeecccccccc--CCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 344444433332 345789999999999995 46666543
No 343
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=54.02 E-value=5.3 Score=36.16 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=18.7
Q ss_pred EEEEEEcCCCChHHHHH-HHHHHH
Q 043980 205 YALGIWGIGGIGKTKIA-RAIFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla-~~v~~~ 227 (233)
+-++|.|-.|+|||+|| ..+.++
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh
Confidence 56789999999999996 466664
No 344
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=53.93 E-value=5.2 Score=36.08 Aligned_cols=24 Identities=33% Similarity=0.243 Sum_probs=19.0
Q ss_pred eEEEEEEcCCCChHHHHH-HHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIA-RAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla-~~v~~~ 227 (233)
-+-++|.|-.|+|||+|| ..+.++
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~ 186 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQ 186 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGG
T ss_pred CCEEEEECCCCCCchHHHHHHHHHh
Confidence 356789999999999996 466664
No 345
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=52.38 E-value=11 Score=31.66 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
+-+||=.=.||.|||-++..+++.++.
T Consensus 38 VI~VGNitvGGTGKTP~vi~L~~~L~~ 64 (315)
T 4ehx_A 38 VISVGNLSVGGSGKTSFVMYLADLLKD 64 (315)
T ss_dssp EEEEEESBSSCCSHHHHHHHHHHHTTT
T ss_pred EEEECCEEeCCCChHHHHHHHHHHHhh
Confidence 445555569999999999999987653
No 346
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=51.63 E-value=13 Score=37.35 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
....|+|+|..+.|||||..++...
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 3577899999999999999988664
No 347
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=49.11 E-value=25 Score=30.46 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=29.2
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 189 RVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
++..+.+.|..-..+.++|+|.|. -||||.+..+..-++
T Consensus 34 r~~~~l~~lg~p~~~~~vI~VTGT--nGKtTT~~~l~~iL~ 72 (422)
T 1w78_A 34 RVSLVAARLGVLKPAPFVFTVAGT--NGKGTTCRTLESILM 72 (422)
T ss_dssp HHHHHHHHHTCSSCSSEEEEEECS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccCCcEEEEeCC--cChHHHHHHHHHHHH
Confidence 466666667655566889999988 579999998877543
No 348
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=48.91 E-value=15 Score=35.05 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
+...|+|+|..+.|||||..++..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g 73 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVG 73 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 467899999999999999999865
No 349
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=48.80 E-value=6.4 Score=35.58 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=19.0
Q ss_pred eEEEEEEcCCCChHHHHH-HHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIA-RAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla-~~v~~~ 227 (233)
-+-++|.|-.|+|||+|| ..+.++
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~ 187 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQ 187 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred CCEEEEecCCCCCccHHHHHHHHHh
Confidence 356789999999999996 466664
No 350
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=46.02 E-value=11 Score=28.66 Aligned_cols=20 Identities=35% Similarity=0.277 Sum_probs=16.3
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 043980 207 LGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 207 i~i~G~gGiGKTtla~~v~~ 226 (233)
+-|++..|.|||.++.....
T Consensus 51 ~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 55789999999999876554
No 351
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.49 E-value=20 Score=39.65 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=15.5
Q ss_pred EEcCCCChHHHHHHHHHH
Q 043980 209 IWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 209 i~G~gGiGKTtla~~v~~ 226 (233)
++|.||.||++|++.+..
T Consensus 1651 LVGvgGSGkqSLtrLAa~ 1668 (3245)
T 3vkg_A 1651 LIGVSGGGKSVLSRFVAW 1668 (3245)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EecCCCCcHHHHHHHHHH
Confidence 579999999999997654
No 352
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.40 E-value=13 Score=41.16 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=19.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 043980 205 YALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.-+-|+|.+|.||||.-+.+...+
T Consensus 907 hGvmlVGp~gsGKTt~~~~L~~al 930 (3245)
T 3vkg_A 907 HGVMMVGPSGGGKTTSWEVYLEAI 930 (3245)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999988776643
No 353
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=43.05 E-value=9.3 Score=34.51 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=24.0
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCChHHHHH-HHHHHH
Q 043980 190 VEEIESLLGVKSKDVYALGIWGIGGIGKTKIA-RAIFDK 227 (233)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla-~~v~~~ 227 (233)
++.+..++..+. -+-++|.|-.|+|||+|+ ..+.|+
T Consensus 150 ikaID~l~Pigr--GQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 150 YKAVDSMIPIGR--GQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp CHHHHHHSCCBT--TCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred eeeecccccccc--CCEEEeecCCCCCcchHHHHHHHhh
Confidence 444544444332 345789999999999996 456654
No 354
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=42.54 E-value=32 Score=30.03 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=28.2
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 189 RVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+++++.+.|.......++|+|.|. -||||.+..+..-+
T Consensus 37 r~~~ll~~lg~p~~~~~vI~VtGT--NGKgSt~~~l~~iL 74 (437)
T 3nrs_A 37 RVKQVAERLDLLKPAPKIFTVAGT--NGKGTTCCTLEAIL 74 (437)
T ss_dssp HHHHHHHHTTCSCSSSEEEEEECS--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccCCEEEEECC--cChHHHHHHHHHHH
Confidence 566677766554556899999988 56999888776643
No 355
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=41.83 E-value=23 Score=29.51 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
.-+|.+-||.|.||.+..+.+...+-
T Consensus 75 ~vlIvfEG~DaAGKgg~Ik~l~~~ld 100 (289)
T 3rhf_A 75 RLLLILQAMDTAGKGGIVSHVVGAMD 100 (289)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cEEEEEECCCCCChHHHHHHHHHhcC
Confidence 45677779999999999999998753
No 356
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=41.68 E-value=56 Score=28.80 Aligned_cols=62 Identities=8% Similarity=0.055 Sum_probs=40.8
Q ss_pred CCcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEeec
Q 043980 22 NKKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFSE 87 (233)
Q Consensus 22 ~~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~ 87 (233)
...+||+|-.-+++. ...+-.+++.|+++|++|-+|.. +..+...+..|-..---.++|+.+
T Consensus 369 ~~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~ 430 (465)
T 3net_A 369 PTPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGA 430 (465)
T ss_dssp SCSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCH
T ss_pred CCCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECc
Confidence 345899986655443 34788999999999999988762 234555555554444445555554
No 357
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=41.03 E-value=19 Score=32.98 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
=+.|.|..|.|||++.+.+.-.+
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999876543
No 358
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=39.41 E-value=24 Score=33.11 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+.|-|.|..|.|||+-++.+.+-
T Consensus 94 nQsIiisGESGAGKTe~tK~i~~y 117 (697)
T 1lkx_A 94 NQCVIISGESGAGKTEASKKIMQF 117 (697)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCchhhHHHHHHH
Confidence 467889999999999999988764
No 359
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=37.38 E-value=24 Score=33.51 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+.|-|.|..|.|||+-++.+.+-
T Consensus 172 nQsIiisGESGAGKTe~tK~i~~y 195 (770)
T 1w9i_A 172 NQSLLITGESGAGKTENTKKVIQY 195 (770)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcchHHHHHHHHH
Confidence 467889999999999999988664
No 360
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=37.18 E-value=64 Score=28.44 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=39.3
Q ss_pred CCcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEee
Q 043980 22 NKKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 22 ~~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
....||||..-+++.. .-+-.++..|.++|+++-++.. +..+...+..|-+.--..++++.
T Consensus 359 ~~~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 359 PHVVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCCEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 3457888776555532 3577889999999999987642 23465666666554444555554
No 361
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=37.04 E-value=77 Score=27.11 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=38.8
Q ss_pred CcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEee
Q 043980 23 KKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 23 ~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
..+||+|---+++ ....+..|+..|+++|++|-+|.. +..+...+..|-..---.++++.
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~iiiG 356 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCG 356 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEEC
Confidence 4478987654433 345788999999999999998862 23555556555433333444444
No 362
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=36.09 E-value=90 Score=22.58 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=34.5
Q ss_pred ccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEee
Q 043980 37 RDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 37 ~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
...++..+...|...|+++=+|. ...++.+...|.++-.+---.++|+.
T Consensus 20 ~~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVVG 68 (130)
T 1v95_A 20 TKDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVIT 68 (130)
T ss_dssp GGHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEEC
T ss_pred hHHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEEe
Confidence 35699999999999999997764 12267777777776544444555554
No 363
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=35.89 E-value=26 Score=31.51 Aligned_cols=100 Identities=8% Similarity=0.084 Sum_probs=55.2
Q ss_pred cceEEEcCccccc--ccchHHHHHHHHhhCCCeEEEeC---ccCCCcchHHHHHHHHHhcCceEEEeecCCCCch-----
Q 043980 24 KYEVFVSFRGEDT--RDKFTSHLYSALSRQSIQTFIDD---QLNRGDEISQSLVNAIEASAISVIIFSESYTSSR----- 93 (233)
Q Consensus 24 ~~dVFISy~~~D~--~~~f~~~L~~~L~~~gi~~~~d~---~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~----- 93 (233)
.+-|+|-|-|-|. ..+-+.+|.+.|.-+|++|.--. +-+.+..+.....+.+.. +--|+||-..+-+..
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~yl~R~~~~lP~-~G~IvIfdRSwYs~~~v~rv 119 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQWRFWRRLPP-KGRTGIFFGNWYSQMLYARV 119 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCTTHHHHHHCCC-TTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCChhhhHHHhCCC-CCeEEEEeCchhhHHHHHHH
Confidence 3558888888775 35678899999999998875421 222333333333344443 333555555432221
Q ss_pred --hhHH-HHHHHHHhh-------hcccceeeceeeeecCCc
Q 043980 94 --WCVD-ELVKILECK-------KEYAQIVIPVLYRVDPSD 124 (233)
Q Consensus 94 --wc~~-El~~~~~~~-------~~~~~~viPIf~~v~~~~ 124 (233)
.|-. |+...++.. ...+..++-+|+.+++..
T Consensus 120 ~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~ee 160 (500)
T 3czp_A 120 EGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQ 160 (500)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHH
Confidence 2322 222222221 334556778888877754
No 364
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=35.60 E-value=34 Score=29.65 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=26.3
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHHh
Q 043980 189 RVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKIS 229 (233)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~~ 229 (233)
++.++.+.|..-..+.++|+|.|. -||||.+..+..-++
T Consensus 24 ~~~~~l~~lg~p~~~~~vI~VtGT--nGKtTT~~~l~~iL~ 62 (428)
T 1jbw_A 24 RILTLLHALGNPQQQGRYIHVTGT--NGKGSAANAIAHVLE 62 (428)
T ss_dssp HHHHHHHHTTCGGGSSCEEEEECS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhcCcEEEEECC--CChHHHHHHHHHHHH
Confidence 344444444433345789999888 579999998877543
No 365
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=35.54 E-value=30 Score=32.97 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+.|-|.|..|.|||+-++.+.+-
T Consensus 140 nQsIiiSGESGAGKTe~tK~i~~y 163 (784)
T 2v26_A 140 SQSIIVSGESGAGKTENTKFVLRY 163 (784)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCCCceehHHHHHHH
Confidence 478889999999999999988664
No 366
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=35.49 E-value=10 Score=25.59 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=17.3
Q ss_pred EEcCcccccccchHHHHHHHHhhCCC
Q 043980 28 FVSFRGEDTRDKFTSHLYSALSRQSI 53 (233)
Q Consensus 28 FISy~~~D~~~~f~~~L~~~L~~~gi 53 (233)
|+||++.+...-|+..|++.|++.+-
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~~ 46 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYAC 46 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHTT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhCC
Confidence 45556554445599999999886553
No 367
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=35.42 E-value=86 Score=22.28 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=21.7
Q ss_pred CCcchHHHHHHHHHhcCceEEEeecCC
Q 043980 63 RGDEISQSLVNAIEASAISVIIFSESY 89 (233)
Q Consensus 63 ~G~~~~~~i~~~i~~s~~~i~v~S~~y 89 (233)
|++.+.+.+.+.|.+++..|.+.++.+
T Consensus 11 p~~~~~~~~~~~i~~A~~~I~i~~~~~ 37 (155)
T 1byr_A 11 PEGSARVLVLSAIDSAKTSIRMMAYSF 37 (155)
T ss_dssp TTTHHHHHHHHHHHHCSSEEEEEESSB
T ss_pred CCCcHHHHHHHHHHHHhhEEEEEEEEe
Confidence 566677888888999999888888766
No 368
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=35.12 E-value=28 Score=33.35 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.5
Q ss_pred eEEEEEEcC-CCChHHHHHHHHHHHHhc
Q 043980 204 VYALGIWGI-GGIGKTKIARAIFDKISS 230 (233)
Q Consensus 204 ~~~i~i~G~-gGiGKTtla~~v~~~~~~ 230 (233)
.+.+-|.|. .|+|||+++..+++.++.
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l~~ 61 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASFLL 61 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHHHS
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 567889998 599999999999887654
No 369
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=34.86 E-value=31 Score=32.83 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+.|-|.|..|.|||+-++.+-+-
T Consensus 171 nQsIiiSGESGAGKTe~tK~im~y 194 (783)
T 4db1_A 171 NQSILITGESGAGKTVNTKRVIQY 194 (783)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEeCCCCCCCchHHHHHHHh
Confidence 478889999999999999988764
No 370
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=34.51 E-value=31 Score=34.03 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+.|-|.|..|.|||+-++.+.+-
T Consensus 144 nQsIiiSGESGAGKTestK~im~y 167 (1052)
T 4anj_A 144 SQSIIVSGESGAGKTENTKFVLRY 167 (1052)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHH
Confidence 478889999999999999988764
No 371
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=34.42 E-value=32 Score=32.83 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+.|-|.|..|.|||+-++.+.+-
T Consensus 156 nQsIiisGESGAGKTe~tK~i~~y 179 (795)
T 1w7j_A 156 NQSIIVSGESGAGKTVSAKYAMRY 179 (795)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCcchHHHHHHHH
Confidence 478889999999999999988764
No 372
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=34.28 E-value=28 Score=22.54 Aligned_cols=38 Identities=8% Similarity=0.245 Sum_probs=26.0
Q ss_pred HHHHHHHHhhCCCeEEEeC-ccC---CCcchHHHHHHHHHhc
Q 043980 41 TSHLYSALSRQSIQTFIDD-QLN---RGDEISQSLVNAIEAS 78 (233)
Q Consensus 41 ~~~L~~~L~~~gi~~~~d~-~~~---~G~~~~~~i~~~i~~s 78 (233)
+..|...|..+||..|.|. .+. |-..+.+++...+.+.
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~ 48 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGA 48 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHH
Confidence 4567799999999999987 443 3334556666665543
No 373
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=33.76 E-value=30 Score=33.24 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
.-+.|-|.|..|.|||.-++.+.+-
T Consensus 168 ~nQsIiiSGESGAGKTe~tK~i~~y 192 (837)
T 1kk8_A 168 ENQSCLITGESGAGKTENTKKVIMY 192 (837)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCchhhHHHHHHH
Confidence 3578889999999999999988764
No 374
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=33.49 E-value=99 Score=27.49 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=39.3
Q ss_pred CCCcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEee
Q 043980 21 NNKKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 21 ~~~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
....+||||..-+++. ...+-.|+..|.++||++-+|.+ .+..+...+..|-..---.++|+.
T Consensus 416 ~~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~~viiG 478 (517)
T 4g85_A 416 RTTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPLVAIIG 478 (517)
T ss_dssp CSCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS--SSCCHHHHHHHHHHHCCCEEEEEC
T ss_pred cCCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCEEEEEC
Confidence 3456899987655443 33577899999999999977641 233455556555443333444444
No 375
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=33.41 E-value=90 Score=27.08 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=39.1
Q ss_pred CCCcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEee
Q 043980 21 NNKKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 21 ~~~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
.....||+|...+++. ..-+-.|+..|.++||++-+|.+ .+..+...+..|-..---.++|+.
T Consensus 363 ~~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~~viiG 425 (464)
T 4g84_A 363 RTTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPLVAIIG 425 (464)
T ss_dssp CSCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC--SSCCHHHHHHHHHHHTCCEEEECC
T ss_pred ccccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCEEEEEC
Confidence 3456799998766543 33577899999999999976541 233455555555433233444443
No 376
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=33.25 E-value=19 Score=29.80 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
.+.|.|.|. ||+||.+++.++.
T Consensus 105 ~r~ivl~GP---gK~tl~~~L~~~~ 126 (295)
T 1kjw_A 105 ARPIIILGP---TKDRANDDLLSEF 126 (295)
T ss_dssp CCCEEEEST---THHHHHHHHHHHC
T ss_pred CCEEEEECC---CHHHHHHHHHhhC
Confidence 467888887 7999999998764
No 377
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=33.09 E-value=47 Score=28.97 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=25.8
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 189 RVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
++.++.+.|..-..+.++|+|.|. -||||.+..+..-+
T Consensus 37 ~~~~~l~~lg~p~~~~~vI~VTGT--nGKtTT~~~l~~iL 74 (442)
T 1o5z_A 37 RISMLLSKLGNPHLEYKTIHIGGT--NGKGSVANMVSNIL 74 (442)
T ss_dssp HHHHHHHHTTCGGGSSEEEEEECS--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhcCCEEEEECC--cCHHHHHHHHHHHH
Confidence 444544545433345789999888 57999998877644
No 378
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=32.28 E-value=31 Score=33.83 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+.|-|.|..|.|||+-++.+.+-
T Consensus 172 ~QsIiisGESGAGKTe~~K~i~~y 195 (1010)
T 1g8x_A 172 NQSLLITGESGAGKTENTKKVIQY 195 (1010)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCcchHHHHHHHH
Confidence 467889999999999999988664
No 379
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=32.18 E-value=45 Score=28.85 Aligned_cols=37 Identities=27% Similarity=0.181 Sum_probs=24.5
Q ss_pred ccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHH
Q 043980 186 VESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 186 ~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
+..+.+.+..++... -+-|++..|.|||..+......
T Consensus 95 ~~~Q~~ai~~i~~~~-----~~ll~~~TGsGKT~~~l~~i~~ 131 (472)
T 2fwr_A 95 RDYQEKALERWLVDK-----RGCIVLPTGSGKTHVAMAAINE 131 (472)
T ss_dssp CHHHHHHHHHHTTTT-----EEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcC-----CEEEEeCCCCCHHHHHHHHHHH
Confidence 445556666555431 1567899999999998766544
No 380
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=31.82 E-value=42 Score=29.78 Aligned_cols=38 Identities=29% Similarity=0.457 Sum_probs=27.0
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 189 RVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
+++.+.+.+..-....++|+|.|.. ||||.+..+..-+
T Consensus 49 r~~~ll~~lg~p~~~~~vI~VtGTN--GKtST~~~l~~iL 86 (487)
T 2vos_A 49 RISALMDLLGSPQRSYPSIHIAGTN--GKTSVARMVDALV 86 (487)
T ss_dssp HHHHHHHHTTCGGGSSCEEEEECSS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhcCeEEEEeCCC--CcHHHHHHHHHHH
Confidence 5566666664433457899999885 7999998877654
No 381
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=31.72 E-value=74 Score=27.33 Aligned_cols=61 Identities=11% Similarity=0.254 Sum_probs=38.9
Q ss_pred CCcceEEEcCcccccccchHHHHHHHHhhC--CCeEEEeCccCCCcchHHHHHHHHHhcCceEEEee
Q 043980 22 NKKYEVFVSFRGEDTRDKFTSHLYSALSRQ--SIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 22 ~~~~dVFISy~~~D~~~~f~~~L~~~L~~~--gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
...+||+|-.-+++ ....+..|++.|.++ |++|-+|.. +..+...+..|-..---.++++.
T Consensus 325 ~~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iiiG 387 (423)
T 1htt_A 325 DPVVDIYLVASGAD-TQSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVLG 387 (423)
T ss_dssp CCSCSEEEEECSTT-HHHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCCcEEEEEcCHH-HHHHHHHHHHHHHcCCCCcEEEEeCC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 34578988775543 244688999999999 999998761 23455555555333333444444
No 382
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=31.65 E-value=36 Score=33.39 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+.|-|.|..|.|||+-++.+.+-
T Consensus 146 ~QsIiisGESGAGKTe~~K~i~~y 169 (995)
T 2ycu_A 146 DQSILCTGESGAGKTENTKKVIQY 169 (995)
T ss_dssp CEEEEEECBTTSSHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCchhhHHHHHHH
Confidence 467789999999999999988764
No 383
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=31.15 E-value=69 Score=24.11 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=44.6
Q ss_pred cchHHHHHHHHhhC--CCeEEEeCc--c--------CCC--------cchHHHHHHHHHhcCceEEEeecCCCCchhhHH
Q 043980 38 DKFTSHLYSALSRQ--SIQTFIDDQ--L--------NRG--------DEISQSLVNAIEASAISVIIFSESYTSSRWCVD 97 (233)
Q Consensus 38 ~~f~~~L~~~L~~~--gi~~~~d~~--~--------~~G--------~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~ 97 (233)
..+...+.+.|++. |+.+|.-.+ . ..+ ..|...=.++|++|+++|+++...-..+ =+..
T Consensus 22 ~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ldg~~~D~-GTa~ 100 (167)
T 1s2d_A 22 RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLYDMDQLDD-GSAF 100 (167)
T ss_dssp HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEEEESSSCCH-HHHH
T ss_pred HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCCC-Ccee
Confidence 45788999999999 888875331 1 111 1233344578999999999998755543 4556
Q ss_pred HHHHHHHh
Q 043980 98 ELVKILEC 105 (233)
Q Consensus 98 El~~~~~~ 105 (233)
|+-.+...
T Consensus 101 EiGyA~al 108 (167)
T 1s2d_A 101 XIGFMRAM 108 (167)
T ss_dssp HHHHHHHT
T ss_pred ehhhHhhC
Confidence 77766543
No 384
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=31.10 E-value=60 Score=24.65 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=14.8
Q ss_pred EEEEcCCCChHHHHH-HHHHHH
Q 043980 207 LGIWGIGGIGKTKIA-RAIFDK 227 (233)
Q Consensus 207 i~i~G~gGiGKTtla-~~v~~~ 227 (233)
+-+++..|.|||..+ -.+.+.
T Consensus 54 ~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 54 VLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 567899999999763 344443
No 385
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=30.32 E-value=1.1e+02 Score=26.44 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=37.0
Q ss_pred cceEEEcCcccccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEee
Q 043980 24 KYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 24 ~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
.+||+|-.-+++. ...+..|++.|.++|++|-+|.. +..+...+..|-..---.++|+.
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~iiiG 390 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIFG 390 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEEEEC
Confidence 4889865544432 44688999999999999998761 23454455554333333445554
No 386
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=30.30 E-value=12 Score=25.58 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=18.2
Q ss_pred CcceEEEcCc---------ccccccchHHHHHHHHhhCC
Q 043980 23 KKYEVFVSFR---------GEDTRDKFTSHLYSALSRQS 52 (233)
Q Consensus 23 ~~~dVFISy~---------~~D~~~~f~~~L~~~L~~~g 52 (233)
..-|.+++|+ +.+...-|+..|++.|++.+
T Consensus 9 ~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 9 VEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 3456666665 43333448888888887654
No 387
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=29.99 E-value=27 Score=26.25 Aligned_cols=21 Identities=29% Similarity=0.148 Sum_probs=14.8
Q ss_pred EEEEcCCCChHHHHHH-HHHHH
Q 043980 207 LGIWGIGGIGKTKIAR-AIFDK 227 (233)
Q Consensus 207 i~i~G~gGiGKTtla~-~v~~~ 227 (233)
+-+.+..|.|||..+- .+.+.
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHH
Confidence 5677899999998744 34443
No 388
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.66 E-value=44 Score=33.06 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
-+.|-|.|..|.|||+-++.+.+-+
T Consensus 156 ~QsIiisGESGAGKTe~~K~i~~yl 180 (1080)
T 2dfs_A 156 NQSIIVSGESGAGKTVSAKYAMRYF 180 (1080)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEEcCCCCCCccchHHHHHHHH
Confidence 4788899999999999999887643
No 389
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=28.63 E-value=12 Score=25.61 Aligned_cols=31 Identities=6% Similarity=0.165 Sum_probs=18.4
Q ss_pred CCcceEEEcCcc---------cccccchHHHHHHHHhhCC
Q 043980 22 NKKYEVFVSFRG---------EDTRDKFTSHLYSALSRQS 52 (233)
Q Consensus 22 ~~~~dVFISy~~---------~D~~~~f~~~L~~~L~~~g 52 (233)
+..-|++++|+. .+...-|+..|++.|++.+
T Consensus 10 P~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 10 PDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp CTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 345677777753 3333347777777776543
No 390
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=28.55 E-value=1e+02 Score=27.02 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=35.9
Q ss_pred cceEEEcCcc--cccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEee
Q 043980 24 KYEVFVSFRG--EDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 24 ~~dVFISy~~--~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
.++|+|---+ .+.....+..|++.|+.+|++|.+|.. +..+...+..|-..---.++++.
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~---~~~~g~k~~~ad~~g~p~~iivG 426 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDT---DQRAGAKFATADLIGIPWQIHVG 426 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHTCSEEEEEC
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEEC
Confidence 4788776332 122345789999999999999999872 23444444444222222344444
No 391
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=28.48 E-value=38 Score=30.51 Aligned_cols=46 Identities=20% Similarity=-0.025 Sum_probs=25.5
Q ss_pred cccccchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHHHH
Q 043980 183 LAGVESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFDKI 228 (233)
Q Consensus 183 ~~g~~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~~~ 228 (233)
..-+..+.+.+..++..-..+.+-+.+++..|.|||..|-.+..++
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHH
Confidence 3445555555555443111111223566888999999987766553
No 392
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=28.12 E-value=99 Score=27.23 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=41.2
Q ss_pred CcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeCc-cCCCcchHHHHHHHHHhcCceEEEee
Q 043980 23 KKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQ-LNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 23 ~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~-~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
...||+|-.-+++. ...+-.+++.|+++|++|-+|.. -..+..+...+..|-..---.++|+.
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 34788876544432 34678899999999999988752 11256777777776554444555554
No 393
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=28.12 E-value=78 Score=27.12 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=38.2
Q ss_pred CCcceEEEcCcccccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEee
Q 043980 22 NKKYEVFVSFRGEDTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 22 ~~~~dVFISy~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
...+||+|-.-+++. ...+..|+..|.++|++|-+|. .+..+...+..|-..---.++++.
T Consensus 327 ~~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~---~~~~~~~~~~~a~~~g~p~~iiig 387 (420)
T 1qe0_A 327 EENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDY---LQRKIKGQMKQADRLGAKFTIVIG 387 (420)
T ss_dssp CCCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECC---SCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEec---CCCCHHHHHHHHHHcCCCEEEEEC
Confidence 344788876544332 3467889999999999999886 123455555555333333455554
No 394
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=27.87 E-value=31 Score=27.71 Aligned_cols=34 Identities=9% Similarity=-0.123 Sum_probs=21.3
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 188 SRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
.+.+.+..++.. +.. -+++..|.|||..+..+..
T Consensus 117 ~Q~~ai~~~l~~---~~~--ll~~~tGsGKT~~~~~~~~ 150 (282)
T 1rif_A 117 YQKDAVFEGLVN---RRR--ILNLPTSAGRSLIQALLAR 150 (282)
T ss_dssp HHHHHHHHHHHH---SEE--EECCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCe--EEEcCCCCCcHHHHHHHHH
Confidence 345555555542 112 3488899999999876554
No 395
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=27.46 E-value=1.5e+02 Score=26.21 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=31.7
Q ss_pred ccccchHHHHHHHHhhCCCeEE--EeCccCCCcchHHHHHHHHHhcCceEEEeecCCC
Q 043980 35 DTRDKFTSHLYSALSRQSIQTF--IDDQLNRGDEISQSLVNAIEASAISVIIFSESYT 90 (233)
Q Consensus 35 D~~~~f~~~L~~~L~~~gi~~~--~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~ 90 (233)
|.-...+..|++.|+++||+|. +|+ ..+..+...+.++=..---.++++.++-+
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Dd--r~~~siGkK~r~Ad~iGiPy~IiVG~kEl 416 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLE--TMQSSLEQLYSKYDEMSILFTVLVTETTL 416 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGS--SSCCTTHHHHHHHGGGTCSEEEEECTTST
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecC--CcCCCHHHHHHHHHHcCCCEEEEECchhh
Confidence 3345689999999999999998 443 11333434444432322234555565433
No 396
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=27.40 E-value=73 Score=24.09 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=13.3
Q ss_pred EEEEcCCCChHHHHHHH
Q 043980 207 LGIWGIGGIGKTKIARA 223 (233)
Q Consensus 207 i~i~G~gGiGKTtla~~ 223 (233)
+-+.+..|.|||..+..
T Consensus 54 ~li~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVL 70 (220)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCchhhhhhH
Confidence 55678899999986654
No 397
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=27.26 E-value=57 Score=26.60 Aligned_cols=19 Identities=21% Similarity=0.025 Sum_probs=14.6
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 043980 206 ALGIWGIGGIGKTKIARAI 224 (233)
Q Consensus 206 ~i~i~G~gGiGKTtla~~v 224 (233)
.+-+.+..|.|||..+...
T Consensus 46 ~~l~~~~TGsGKT~~~~~~ 64 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIP 64 (367)
T ss_dssp EEEEECCSSSSHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHH
Confidence 4557899999999886543
No 398
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=27.20 E-value=15 Score=25.50 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=19.5
Q ss_pred CCCcceEEEcCcc---------cccccchHHHHHHHHhhCC
Q 043980 21 NNKKYEVFVSFRG---------EDTRDKFTSHLYSALSRQS 52 (233)
Q Consensus 21 ~~~~~dVFISy~~---------~D~~~~f~~~L~~~L~~~g 52 (233)
-+..-|++++|+. .....-|+..|++.|++.+
T Consensus 13 iP~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 13 IPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp CCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 3445677777753 2223347888888877644
No 399
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=26.57 E-value=15 Score=25.50 Aligned_cols=29 Identities=7% Similarity=0.241 Sum_probs=18.0
Q ss_pred cceEEEcCc---------ccccccchHHHHHHHHhhCC
Q 043980 24 KYEVFVSFR---------GEDTRDKFTSHLYSALSRQS 52 (233)
Q Consensus 24 ~~dVFISy~---------~~D~~~~f~~~L~~~L~~~g 52 (233)
.-|++++|+ +.+...-|+..|++.|++.+
T Consensus 14 ~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp SCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 456666664 43333448888888887644
No 400
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=25.90 E-value=37 Score=31.68 Aligned_cols=20 Identities=25% Similarity=-0.056 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCChHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARA 223 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~ 223 (233)
.+.+-++|..|.|||+.|-.
T Consensus 155 rk~vlv~apTGSGKT~~al~ 174 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAIQ 174 (677)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 47888999999999996543
No 401
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=25.62 E-value=72 Score=22.45 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=39.1
Q ss_pred HHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHHHHHHHHhhhcccceeeceeeeec
Q 043980 46 SALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDELVKILECKKEYAQIVIPVLYRVD 121 (233)
Q Consensus 46 ~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~viPIf~~v~ 121 (233)
--+...|+.+|... .-+++...+.+.+++ ++.|++++++.+. .+.+++.. ++ ...+|.+..++
T Consensus 15 ~GFrLaGie~~~v~---~~ee~~~~~~~l~~~-digIIlIte~ia~--~i~~~i~~-~~------~~~~P~IveIP 77 (115)
T 3aon_B 15 SPFRLFGFDVQHGT---TKTEIRKTIDEMAKN-EYGVIYITEQCAN--LVPETIER-YK------GQLTPAIILIP 77 (115)
T ss_dssp GGGGGGTCEEECCC---SHHHHHHHHHHHHHT-TEEEEEEEHHHHT--TCHHHHHH-HH------TSSSCEEEEEC
T ss_pred HHHHHcCCeEEEeC---CHHHHHHHHHHHHhc-CceEEEEeHHHHH--HhHHHHHH-Hh------CCCCCEEEEEC
Confidence 34566788887432 224455666666777 9999999998776 34444443 22 23567776543
No 402
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=24.66 E-value=63 Score=28.22 Aligned_cols=35 Identities=9% Similarity=-0.165 Sum_probs=22.7
Q ss_pred cchHHHHHHHhccCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 043980 187 ESRVEEIESLLGVKSKDVYALGIWGIGGIGKTKIARAIFD 226 (233)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~i~i~G~gGiGKTtla~~v~~ 226 (233)
..+.+.+..++.. +-+-|+|..|.|||..+.....
T Consensus 116 ~~Q~~ai~~~~~~-----~~~ll~~~tGsGKT~~~~~~~~ 150 (510)
T 2oca_A 116 WYQKDAVFEGLVN-----RRRILNLPTSAGRSLIQALLAR 150 (510)
T ss_dssp HHHHHHHHHHHHH-----SEEEEECCSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHH
Confidence 3445555555542 2346789999999999876544
No 403
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=22.83 E-value=43 Score=25.85 Aligned_cols=16 Identities=25% Similarity=-0.074 Sum_probs=12.6
Q ss_pred EEEEcCCCChHHHHHH
Q 043980 207 LGIWGIGGIGKTKIAR 222 (233)
Q Consensus 207 i~i~G~gGiGKTtla~ 222 (233)
+-+.+..|.|||..+.
T Consensus 65 ~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 65 VLGAAKTGSGKTLAFL 80 (236)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEEeCCCCcHHHHHH
Confidence 5577899999998644
No 404
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=22.60 E-value=1.4e+02 Score=22.70 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=33.7
Q ss_pred EEcCccccc--ccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHh
Q 043980 28 FVSFRGEDT--RDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEA 77 (233)
Q Consensus 28 FISy~~~D~--~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~ 77 (233)
||.+-|-|. ..+-+..|++.|+.+|+.+..-. .+.|..+...+.+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr-eP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR-EPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCCcHHHHHHHHhhc
Confidence 788877774 35678999999999999886543 23355565565555543
No 405
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=22.36 E-value=41 Score=25.18 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=12.5
Q ss_pred EEEEcCCCChHHHHHH
Q 043980 207 LGIWGIGGIGKTKIAR 222 (233)
Q Consensus 207 i~i~G~gGiGKTtla~ 222 (233)
+-+.+..|.|||..+.
T Consensus 43 ~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 43 ILARAKNGTGKSGAYL 58 (206)
T ss_dssp EEEECCSSSTTHHHHH
T ss_pred EEEECCCCCchHHHHH
Confidence 5677889999996544
No 406
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=22.25 E-value=1.8e+02 Score=26.16 Aligned_cols=62 Identities=10% Similarity=0.219 Sum_probs=39.1
Q ss_pred cceEEEcCcc-c-ccccchHHHHHHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEeecC
Q 043980 24 KYEVFVSFRG-E-DTRDKFTSHLYSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFSES 88 (233)
Q Consensus 24 ~~dVFISy~~-~-D~~~~f~~~L~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~ 88 (233)
.+||+|---+ + +.....+..|+..|+++|+++-+|.. +..+...+.+|-..---.++++.++
T Consensus 470 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~---~~~~g~k~~~a~~~g~p~~iivG~~ 533 (572)
T 2j3l_A 470 PFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDR---NERAGVKFADADLIGCPIRITVGKK 533 (572)
T ss_dssp SCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHCCSEEEEECGG
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCC---CCCHhHHHHHHHhcCCCEEEEEccc
Confidence 3788876443 2 22245788999999999999999871 2355555555544333345555543
No 407
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=22.18 E-value=24 Score=25.18 Aligned_cols=30 Identities=10% Similarity=0.217 Sum_probs=18.3
Q ss_pred CcceEEEcCc---------ccccccchHHHHHHHHhhCC
Q 043980 23 KKYEVFVSFR---------GEDTRDKFTSHLYSALSRQS 52 (233)
Q Consensus 23 ~~~dVFISy~---------~~D~~~~f~~~L~~~L~~~g 52 (233)
..-|++++|+ +......|+..|++.|++.+
T Consensus 14 ~~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 14 VEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp TTTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHhC
Confidence 3456666664 33333448888888887644
No 408
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.68 E-value=41 Score=33.50 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHH
Q 043980 204 VYALGIWGIGGIGKTKIARAIFDK 227 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtla~~v~~~ 227 (233)
-+.|-|.|..|.|||.-++.+.+-
T Consensus 169 ~Q~i~isGeSGaGKTe~~k~~~~y 192 (1184)
T 1i84_S 169 DQSILCTGESGAGKTENTKKVIQY 192 (1184)
T ss_dssp CEEEECCCSTTSSTTHHHHHHHHH
T ss_pred CcEEEEecCCCCCccHHHHHHHHH
Confidence 467889999999999999988764
No 409
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=21.22 E-value=97 Score=25.73 Aligned_cols=17 Identities=24% Similarity=0.136 Sum_probs=13.3
Q ss_pred EEEEcCCCChHHHHHHH
Q 043980 207 LGIWGIGGIGKTKIARA 223 (233)
Q Consensus 207 i~i~G~gGiGKTtla~~ 223 (233)
+-+.+..|.|||..+..
T Consensus 61 ~li~a~TGsGKT~~~~~ 77 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFVI 77 (400)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCcHHHHHHHH
Confidence 55778999999986644
No 410
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=21.20 E-value=45 Score=27.60 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=19.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHHHHHhc
Q 043980 203 DVYALGIWGIGGIGKTKIARAIFDKISS 230 (233)
Q Consensus 203 ~~~~i~i~G~gGiGKTtla~~v~~~~~~ 230 (233)
..|.|.|.|. ||+||.+.+.++.-.
T Consensus 99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~ 123 (292)
T 3tvt_A 99 YTRPVIILGP---LKDRINDDLISEYPD 123 (292)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTT
T ss_pred CCCeEEEeCC---CHHHHHHHHHHhChh
Confidence 4577888888 499999999887533
No 411
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=21.20 E-value=57 Score=29.14 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=38.5
Q ss_pred CCCCCcceEEEcCc-c-cc--cccchHHHHHHHHhhCCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEee
Q 043980 19 PRNNKKYEVFVSFR-G-ED--TRDKFTSHLYSALSRQSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFS 86 (233)
Q Consensus 19 ~~~~~~~dVFISy~-~-~D--~~~~f~~~L~~~L~~~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S 86 (233)
|.....|+|+|--- + ++ .-...+..|++.|+.+|++|-+|. + ..+...+.++-..---.++++.
T Consensus 309 P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~----~s~g~k~~~a~~~G~p~~iiiG 377 (501)
T 1nj1_A 309 PPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRD----IRAGRKYYEWEMRGVPLRVEIG 377 (501)
T ss_dssp CTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCS----SCHHHHHHHHHHEECSEEEEEC
T ss_pred CccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEEC
Confidence 33334578877644 3 21 234578999999999999999987 4 3344444444332223344444
No 412
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=20.89 E-value=60 Score=25.16 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=12.3
Q ss_pred EEEEcCCCChHHHHHH
Q 043980 207 LGIWGIGGIGKTKIAR 222 (233)
Q Consensus 207 i~i~G~gGiGKTtla~ 222 (233)
+-+.+..|.|||..+.
T Consensus 70 ~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 70 VIAQAQSGTGKTATFA 85 (237)
T ss_dssp EEECCCSSHHHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 5567889999997643
No 413
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.87 E-value=56 Score=30.17 Aligned_cols=23 Identities=35% Similarity=0.247 Sum_probs=17.0
Q ss_pred EEEEEEcCCCChHHHHHHH-HHHH
Q 043980 205 YALGIWGIGGIGKTKIARA-IFDK 227 (233)
Q Consensus 205 ~~i~i~G~gGiGKTtla~~-v~~~ 227 (233)
+.+-|+|..|.|||+.+.. +++.
T Consensus 47 ~~~lv~apTGsGKT~~~~l~il~~ 70 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGIISF 70 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Confidence 3466889999999999854 4443
No 414
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=20.74 E-value=2.1e+02 Score=19.64 Aligned_cols=66 Identities=11% Similarity=0.160 Sum_probs=42.2
Q ss_pred HHHHhhCCCeEEEeCccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHHHHHHHHhhhcccceeeceeeeec
Q 043980 45 YSALSRQSIQTFIDDQLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDELVKILECKKEYAQIVIPVLYRVD 121 (233)
Q Consensus 45 ~~~L~~~gi~~~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~viPIf~~v~ 121 (233)
+--+...|+.+|... ..+++...+.+.+++-++.|++++++.+. .+.+++... +. ...+|.+..++
T Consensus 15 v~GFrLaGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~--~i~~~i~~~----~~--~~~~P~Il~IP 80 (109)
T 2d00_A 15 AQGFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP--DPERAVERL----MR--GRDLPVLLPIA 80 (109)
T ss_dssp HHHHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS--CHHHHHHHH----TT--CCCCCEEEEES
T ss_pred HHHHHHcCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH--hhHHHHHHH----Hh--CCCCeEEEEEC
Confidence 356677899887532 22455566677777789999999999988 344443332 11 22477776653
No 415
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=20.50 E-value=64 Score=25.93 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=13.6
Q ss_pred EEEEcCCCChHHHHHHH
Q 043980 207 LGIWGIGGIGKTKIARA 223 (233)
Q Consensus 207 i~i~G~gGiGKTtla~~ 223 (233)
+-+.+..|.|||..+..
T Consensus 34 ~lv~~~TGsGKT~~~~~ 50 (337)
T 2z0m_A 34 VVVRAKTGSGKTAAYAI 50 (337)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHH
Confidence 56789999999986654
No 416
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=20.42 E-value=35 Score=28.76 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.3
Q ss_pred eEEEEEEcCCCChHHHH
Q 043980 204 VYALGIWGIGGIGKTKI 220 (233)
Q Consensus 204 ~~~i~i~G~gGiGKTtl 220 (233)
-+.+||+|+|.||+...
T Consensus 141 g~tvGIiG~G~IG~~va 157 (334)
T 3kb6_A 141 RLTLGVIGTGRIGSRVA 157 (334)
T ss_dssp GSEEEEECCSHHHHHHH
T ss_pred CcEEEEECcchHHHHHH
Confidence 46899999999999654
No 417
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=20.09 E-value=1.4e+02 Score=24.22 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=46.9
Q ss_pred cchHHHHHHHHhhCCCeEEEeC-ccCCCcchHHHHHHHHHhcCceEEEeecCCCCchhhHHHHHHHHHhhhc
Q 043980 38 DKFTSHLYSALSRQSIQTFIDD-QLNRGDEISQSLVNAIEASAISVIIFSESYTSSRWCVDELVKILECKKE 108 (233)
Q Consensus 38 ~~f~~~L~~~L~~~gi~~~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~ 108 (233)
..++.++.+.|...|+.+-... .+-.|.-+. +.....+.++=||-+|-+...++--..++-+++...+.
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~vP--L~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd 164 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRD 164 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHHH--HHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhhh--HHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4699999999999999765333 454554332 23334567788888898876676655678888865543
Done!