BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043984
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 290 bits (742), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 137/304 (45%), Positives = 203/304 (66%), Gaps = 11/304 (3%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
L+ ++YA CP A ++ + AV + R A ++RLHFHDCFVQGCD SVLLDDT +
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
GEK A N N+++GF +ID IK+++ES CPG+VSCADIL +AARD+++ +GG W+V +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRK 213
GR+DS TAS + A+S+LP+P L +IS F +G + ++V LSGAHTIG A+C +R
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 214 RIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEG 273
RIY + S I+P T+ L++ CP +G D N + D TPN FDN++Y L +G
Sbjct: 182 RIYNE----SNIDP---TYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKG 234
Query: 274 VLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRKNC 333
+L+SDQ++++ G+ T V Y+++A F F ++M+KMGN++ P + +G++R NC
Sbjct: 235 LLHSDQQLFN---GVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLS-PLTGTSGQIRTNC 290
Query: 334 RFVN 337
R N
Sbjct: 291 RKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 283 bits (725), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 140/305 (45%), Positives = 201/305 (65%), Gaps = 4/305 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
L +Y+ TCP A IVR ++ A+ SD R A ++RLHFHDCFV GCD S+LLDDT +
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
Q EK A N N+ +GF ++D IK +E+ CPG+VSC+D+L +A+ ++ L GGP W V +
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRK 213
GR+DS TA+ A A+S++PSP E L +I KF GL+ D+VALSGAHT G ARC +
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 214 RIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGE 272
R++ ++ T +P L+ T LS L+ +CP GS + T +D TP+ FDN+++ L +
Sbjct: 183 RLF-NFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSND 241
Query: 273 GVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRKN 332
G+L SDQE++S+ G T +V +A + FFQ F+ SM+ MGNI+ P + NGE+R +
Sbjct: 242 GLLQSDQELFSTT-GSSTIAIVTSFASNQTLFFQAFAQSMINMGNIS-PLTGSNGEIRLD 299
Query: 333 CRFVN 337
C+ VN
Sbjct: 300 CKKVN 304
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 145/308 (47%), Positives = 205/308 (66%), Gaps = 14/308 (4%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
L+ D YAK+CP +IVRK++ A+ ++ R AA ++RLHFHDCFV GCD S+LLD
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGA--- 58
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
EK A N N+ +GF +ID IK +E+ CPG+VSCADILT+AARD+++L GGP W V +
Sbjct: 59 DSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRK 213
GRKD A+ A+ NLPSP E L +II+KF L++TD+VALSGAHT G A+C +
Sbjct: 119 GRKDGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSN 177
Query: 214 RIYGDYRVTSGINP---LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQ 270
R+ + T NP L + LS L+++CP G+ N +D T + FDN++++ LL+
Sbjct: 178 RL---FNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLE 234
Query: 271 GEGVLNSDQEMYSSIFGIQ-TKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEV 329
G+G+L+SDQ ++SS + TK+LV Y+ FF+ F+ +M++MGNI+N S GEV
Sbjct: 235 GKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNISNGAS---GEV 291
Query: 330 RKNCRFVN 337
R NCR +N
Sbjct: 292 RTNCRVIN 299
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 132/305 (43%), Positives = 196/305 (64%), Gaps = 4/305 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
L +YA TCP A +VR ++ A SD R A ++RLHFHDCFV GCD S+LLD++ +
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
EK A N N+ +GF ++D IK +E+ CPG+VSC D+L +A++ ++ L GGP W V +
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRK 213
GR+D+ TA+ A A+S++PSP +GL +I SKF GL+ D+VALSGAHT G A C +
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 214 RIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGE 272
R++ ++ +P L+ T LS L+ +CP G + T +D TP+ FDN+++ L
Sbjct: 184 RLF-NFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNN 242
Query: 273 GVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRKN 332
G+L SDQE++S+ G T +V +A + FFQ F+ SM+ MGNI+ P + +GE+R +
Sbjct: 243 GLLQSDQELFSTT-GSATIAIVTSFASNQTLFFQAFAQSMINMGNIS-PLTGSSGEIRLD 300
Query: 333 CRFVN 337
C+ N
Sbjct: 301 CKKTN 305
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 137/307 (44%), Positives = 191/307 (62%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+RLHFHDCFV GCD S+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP+P L + F GL+ +D+VALSG HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + MD TP +FDN +Y L +
Sbjct: 183 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQ 241
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 300
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 301 NCRVVNS 307
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 257 bits (657), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 191/307 (62%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+RLHFHDCFV GCD S+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP+P L + F GL+ +D+VALSG HT G +C +
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIM 182
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + D TP +FDN +Y L +
Sbjct: 183 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 300
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 301 NCRVVNS 307
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 190/307 (61%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+RLHFHDCFV GCD S+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP+P L + F GL+ +D+VALSG HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + D TP +FDN +Y L +
Sbjct: 183 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 300
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 301 NCRVVNS 307
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 190/307 (61%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+RLHFHDCFV GCD S+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP+P L + F GL+ +D+VALSG HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + D TP +FDN +Y L +
Sbjct: 182 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 299
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 300 NCRVVNS 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 190/307 (61%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+RLHFHDCFV GCD S+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP+P L + F GL+ +D+VALSG HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + D TP +FDN +Y L +
Sbjct: 182 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 299
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 300 NCRVVNS 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 190/307 (61%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+RLHFHDCFV GCD S+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP+P L + F GL+ +D+VALSG HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + D TP +FDN +Y L +
Sbjct: 182 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 299
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 300 NCRVVNS 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 189/307 (61%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+RLHFHDCFV GCD S+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP P L + F GL+ +D+VALSG HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + D TP +FDN +Y L +
Sbjct: 183 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 300
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 301 NCRVVNS 307
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 189/307 (61%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+RLHFHDCFV GCD S+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP P L + F GL+ +D+VALSG HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + D TP +FDN +Y L +
Sbjct: 183 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 300
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 301 NCRVVNS 307
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 254 bits (649), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 135/307 (43%), Positives = 190/307 (61%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+RLHFHDCFV GCD S+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP+P L + F GL+ +D+VALSG H+ G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIM 181
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + D TP +FDN +Y L +
Sbjct: 182 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 299
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 300 NCRVVNS 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 254 bits (648), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 142/308 (46%), Positives = 195/308 (63%), Gaps = 10/308 (3%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +TCP F IV + A +DPR A ++RLHFHDCFVQGCDGSVLL++T +
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ E+ A N N+++G +++ IK +E+ CP VSCADIL IAA A +L GGP W VP+
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRK 213
GR+DS TA+ LA+ NLP+P L + + F QGL+ D+V LSG HT G ARC +
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 214 RIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGE 272
R+Y ++ T +P L+ T+L VL++ CP + +N T +D TP+ FDN +Y LLQ
Sbjct: 182 RLY-NFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLN 240
Query: 273 GVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI---TNPESFVNGEV 329
G+L SDQE++S+ G T +VN ++ + FF F SM+KMGNI T E GE+
Sbjct: 241 GLLQSDQELFSTP-GADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDE----GEI 295
Query: 330 RKNCRFVN 337
R C FVN
Sbjct: 296 RLQCNFVN 303
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/307 (43%), Positives = 189/307 (61%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+RLHFHDCFV GCD S+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP+P L + F GL+ +D+VAL G HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIM 181
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + D TP +FDN +Y L +
Sbjct: 182 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 299
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 300 NCRVVNS 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/307 (43%), Positives = 189/307 (61%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+RLHF DCFV GCD S+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP+P L + F GL+ +D+VALSG HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + D TP +FDN +Y L +
Sbjct: 183 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 300
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 301 NCRVVNS 307
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 250 bits (639), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 134/307 (43%), Positives = 188/307 (61%), Gaps = 4/307 (1%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
LT +Y +CP IVR + + SDPR AA I+ LHF DCFV GCD S+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
+ EK A N N+ +GF +IDR+K +ES CP VSCAD+LTIAA+ ++ L GGP W VP+
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLS-VTDMVALSGAHTIGMARCVNYR 212
GR+DS A LA++NLP+P L + F GL+ +D+VALSG HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 213 KRIYGDYRVTSGINP-LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG 271
R+Y ++ T +P L+ T+L L+ +CP G+ + D TP +FDN +Y L +
Sbjct: 182 DRLY-NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 272 EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRK 331
+G++ SDQE++SS T LV +A+ FF F ++M +MGNIT P + G++R
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT-PLTGTQGQIRL 299
Query: 332 NCRFVNT 338
NCR VN+
Sbjct: 300 NCRVVNS 306
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 191/309 (61%), Gaps = 13/309 (4%)
Query: 32 PYLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTI 91
P L+ D+Y +TCP A IVR+ ++ AV D AA ++RLHFHDCFVQGCD SVLLD +
Sbjct: 7 PGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSA 66
Query: 92 DLQGEKKASINRNAL-KGFRIIDRIKNKIESDCPG-IVSCADILTIAARDAIILVGGPYW 149
GE++A N F+ ++ I++++E +C G +VSC+DIL +AARD++++ GGP +
Sbjct: 67 TGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDY 126
Query: 150 DVPVGRKDSKT-ASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARC 208
VP+GR+DS++ AS S+LP P + S+++ GL TD+V +SG HTIG+A C
Sbjct: 127 RVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHC 186
Query: 209 VNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQIL 268
++ R++ T +S T LS LK CP G+D T +D TPN+FDN +Y L
Sbjct: 187 SSFEDRLFPRPDPT-----ISPTFLSRLKRTCPAKGTD-RRTVLDVRTPNVFDNKYYIDL 240
Query: 269 LQGEGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGE 328
+ EG+ SDQ+++++ T+ +V ++A FF+QF S+ KMG + S GE
Sbjct: 241 VNREGLFVSDQDLFTNAI---TRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTS-DQGE 296
Query: 329 VRKNCRFVN 337
VR+NC N
Sbjct: 297 VRRNCSVRN 305
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 179/313 (57%), Gaps = 18/313 (5%)
Query: 34 LTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
L + +Y +CPTA +V++ + A ++ A ++R+HFHDCFV+GCD SVLLD T +
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
EK A N +L+GF +I K+ +E+ CP VSCADIL AARD+ L G + VP
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRK 213
GR+D + + A++ +PSP +I+ F + L+ +MV LSGAH+IG+A C ++
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 214 RIYGDYRVTSGINP-LSETHLSVLKSICP-------PIGSDNNETAMDYETPNLFDNSFY 265
R+Y ++ SGI+P LS ++ ++L++ CP PI ++D TP++ DN +Y
Sbjct: 182 RLY-NFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPI-----TVSLDIITPSVLDNMYY 235
Query: 266 QILLQGEGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFV 325
+ G+L SDQ + + V A + A+ +F+ +MVKMG I +
Sbjct: 236 TGVQLTLGLLTSDQALVTE---ANLSAAVKANAMNLTAWASKFAQAMVKMGQI-EVLTGT 291
Query: 326 NGEVRKNCRFVNT 338
GE+R NC VN+
Sbjct: 292 QGEIRTNCSVVNS 304
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 126/303 (41%), Gaps = 73/303 (24%)
Query: 40 AKTCPTAFEIVRKEMECA------VLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDL 93
K+ PT +K +E A +++ + A LI+RL +H D
Sbjct: 1 GKSYPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGT--------FDSKTKT 52
Query: 94 QG-----EKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPY 148
G + +A + A G I R+ I+ P IVS AD +A A+ + GGP
Sbjct: 53 GGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGPE 111
Query: 149 WDVPVGRKDSKTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIGM 205
GR+D + LP +G L + K GLS D+VALSG HTIG
Sbjct: 112 VPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGK--AMGLSDQDIVALSGGHTIGA 166
Query: 206 ARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFY 265
A +++R + TS NPL +FDNS++
Sbjct: 167 A----HKERSGFEGPWTS--NPL------------------------------IFDNSYF 190
Query: 266 QILLQGE--GVLN--SDQEMYS-SIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITN 320
LL GE G+L SD+ + + S+F + LV KYA D FF ++++ +K+ +
Sbjct: 191 TELLTGEKDGLLQLPSDKALLTDSVF----RPLVEKYAADEDVFFADYAEAHLKLSELGF 246
Query: 321 PES 323
E+
Sbjct: 247 AEA 249
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 132/299 (44%), Gaps = 67/299 (22%)
Query: 30 SEPYLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDC--FVQGCDGSVLL 87
S P ++ DY A E +K++ +++ R A L++RL +H F +G
Sbjct: 15 SYPTVSADYQ-----KAVEKAKKKLR-GFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPF 68
Query: 88 DDTIDLQGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGP 147
TI + A + +A G I R+ ++++ P I+S AD +A A+ + GGP
Sbjct: 69 G-TI----KHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP 122
Query: 148 YWDVPVGRKDSKTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIG 204
GR+D + LP +G L + K GL+ D+VALSG HTIG
Sbjct: 123 EVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 177
Query: 205 MARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSF 264
A +++R + TS NPL +FDNS+
Sbjct: 178 AA----HKERSGFEGPWTS--NPL------------------------------IFDNSY 201
Query: 265 YQILLQG--EGVLN--SDQEMYSS-IFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
+ LL G EG+L SD+ + S +F + LV+KYA D AFF ++++ K+ +
Sbjct: 202 FTELLSGEKEGLLQLPSDKALLSDPVF----RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 132/299 (44%), Gaps = 67/299 (22%)
Query: 30 SEPYLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDC--FVQGCDGSVLL 87
S P ++ DY A E +K++ +++ R A L++RL +H F +G
Sbjct: 3 SYPTVSADYQ-----KAVEKAKKKLR-GFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPF 56
Query: 88 DDTIDLQGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGP 147
TI + A + +A G I R+ ++++ P I+S AD +A A+ + GGP
Sbjct: 57 G-TI----KHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP 110
Query: 148 YWDVPVGRKDSKTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIG 204
GR+D + LP +G L + K GL+ D+VALSG HTIG
Sbjct: 111 EVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 165
Query: 205 MARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSF 264
A +++R + TS NPL +FDNS+
Sbjct: 166 AA----HKERSGFEGPWTS--NPL------------------------------IFDNSY 189
Query: 265 YQILLQG--EGVLN--SDQEMYSS-IFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
+ LL G EG+L SD+ + S +F + LV+KYA D AFF ++++ K+ +
Sbjct: 190 FTELLSGEKEGLLQLPSDKALLSDPVF----RPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 132/299 (44%), Gaps = 67/299 (22%)
Query: 30 SEPYLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDC--FVQGCDGSVLL 87
S P ++ DY A E +K++ +++ R A L++RL +H F +G
Sbjct: 15 SYPTVSADYQ-----KAVEKAKKKLR-GFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPF 68
Query: 88 DDTIDLQGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGP 147
TI + A + +A G I R+ ++++ P I+S AD +A A+ + GGP
Sbjct: 69 G-TI----KHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP 122
Query: 148 YWDVPVGRKDSKTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIG 204
GR+D + LP +G L + K GL+ D+VALSG HTIG
Sbjct: 123 EVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 177
Query: 205 MARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSF 264
A +++R + TS NPL +FDNS+
Sbjct: 178 AA----HKERSGFEGPWTS--NPL------------------------------IFDNSY 201
Query: 265 YQILLQG--EGVLN--SDQEMYSS-IFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
+ LL G EG+L SD+ + S +F + LV+KYA D AFF ++++ K+ +
Sbjct: 202 FTELLSGEKEGLLQLPSDKALLSDPVF----RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 129/300 (43%), Gaps = 69/300 (23%)
Query: 30 SEPYLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDC--FVQGCDGSVLL 87
S P ++ DY A E +K++ +++ R A L++RL +H F +G
Sbjct: 15 SYPTVSADYQ-----KAVEKAKKKLR-GFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPF 68
Query: 88 DDTIDLQGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGP 147
TI + A + +A G I R+ ++++ P I+S AD +A A+ + GGP
Sbjct: 69 G-TI----KHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP 122
Query: 148 YWDVPVGRKDSKTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIG 204
GR+D + LP +G L + K GL+ D+VALSG HTIG
Sbjct: 123 EVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 177
Query: 205 MARCVNYRKRIYGDYRVTSGI-NPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNS 263
A ++ SG P + P +FDNS
Sbjct: 178 AA------------HKEASGFEGPWT-------------------------SNPLIFDNS 200
Query: 264 FYQILLQG--EGVLN--SDQEMYSS-IFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
++ LL G EG+L SD+ + S +F + LV+KYA D AFF ++++ K+ +
Sbjct: 201 YFTELLSGEKEGLLQLPSDKALLSDPVF----RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 132/299 (44%), Gaps = 67/299 (22%)
Query: 30 SEPYLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDC--FVQGCDGSVLL 87
S P ++ DY A E +K++ +++ R A L+++L +H F +G
Sbjct: 3 SYPTVSADYQ-----KAVEKAKKKLR-GFIAEKRCAPLMLKLAWHSAGTFDKGTKTGGPF 56
Query: 88 DDTIDLQGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGP 147
TI + A + +A G I R+ ++++ P I+S AD +A A+ + GGP
Sbjct: 57 G-TI----KHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP 110
Query: 148 YWDVPVGRKDSKTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIG 204
GR+D + LP +G L + K GL+ D+VALSG HTIG
Sbjct: 111 EVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 165
Query: 205 MARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSF 264
A +++R + TS NPL +FDNS+
Sbjct: 166 AA----HKERSGFEGPWTS--NPL------------------------------IFDNSY 189
Query: 265 YQILLQG--EGVLN--SDQEMYSS-IFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
+ LL G EG+L SD+ + S +F + LV+KYA D AFF ++++ K+ +
Sbjct: 190 FTELLSGEKEGLLQLPSDKALLSDPVF----RPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 131/299 (43%), Gaps = 67/299 (22%)
Query: 30 SEPYLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDC--FVQGCDGSVLL 87
S P ++ DY A E +K++ +++ R A L++RL H F +G
Sbjct: 15 SYPTVSADYQ-----KAVEKAKKKLR-GFIAEKRCAPLMLRLAAHSAGTFDKGTKTGGPF 68
Query: 88 DDTIDLQGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGP 147
TI + A + +A G I R+ ++++ P I+S AD +A A+ + GGP
Sbjct: 69 G-TI----KHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP 122
Query: 148 YWDVPVGRKDSKTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIG 204
GR+D + LP +G L + K GL+ D+VALSG HTIG
Sbjct: 123 EVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 177
Query: 205 MARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSF 264
A +++R + TS NPL +FDNS+
Sbjct: 178 AA----HKERSGFEGPWTS--NPL------------------------------IFDNSY 201
Query: 265 YQILLQG--EGVLN--SDQEMYSS-IFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
+ LL G EG+L SD+ + S +F + LV+KYA D AFF ++++ K+ +
Sbjct: 202 FTELLSGEKEGLLQLPSDKALLSDPVF----RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 131/299 (43%), Gaps = 67/299 (22%)
Query: 30 SEPYLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDC--FVQGCDGSVLL 87
S P ++ DY A E +K++ +++ R A L++ L +H F +G
Sbjct: 3 SYPTVSADYQ-----KAVEKAKKKLR-GFIAEKRCAPLMLALAWHSAGTFDKGTKTGGPF 56
Query: 88 DDTIDLQGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGP 147
TI + A + +A G I R+ ++++ P I+S AD +A A+ + GGP
Sbjct: 57 G-TI----KHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP 110
Query: 148 YWDVPVGRKDSKTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIG 204
GR+D + LP +G L + K GL+ D+VALSG HTIG
Sbjct: 111 EVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 165
Query: 205 MARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSF 264
A +++R + TS NPL +FDNS+
Sbjct: 166 AA----HKERSGFEGPWTS--NPL------------------------------IFDNSY 189
Query: 265 YQILLQG--EGVLN--SDQEMYSS-IFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
+ LL G EG+L SD+ + S +F + LV+KYA D AFF ++++ K+ +
Sbjct: 190 FTELLSGEKEGLLQLPSDKALLSDPVF----RPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 131/299 (43%), Gaps = 67/299 (22%)
Query: 30 SEPYLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDC--FVQGCDGSVLL 87
S P ++ DY A E +K++ +++ R A L++RL + F +G
Sbjct: 15 SYPTVSADYQ-----KAVEKAKKKLR-GFIAEKRCAPLMLRLAWASAGTFDKGTKTGGPF 68
Query: 88 DDTIDLQGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGP 147
TI + A + +A G I R+ ++++ P I+S AD +A A+ + GGP
Sbjct: 69 G-TI----KHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP 122
Query: 148 YWDVPVGRKDSKTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIG 204
GR+D + LP +G L + K GL+ D+VALSG HTIG
Sbjct: 123 EVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 177
Query: 205 MARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSF 264
A +++R + TS NPL +FDNS+
Sbjct: 178 AA----HKERSGFEGPWTS--NPL------------------------------IFDNSY 201
Query: 265 YQILLQG--EGVLN--SDQEMYSS-IFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
+ LL G EG+L SD+ + S +F + LV+KYA D AFF ++++ K+ +
Sbjct: 202 FTELLSGEKEGLLQLPSDKALLSDPVF----RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 131/299 (43%), Gaps = 67/299 (22%)
Query: 30 SEPYLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDC--FVQGCDGSVLL 87
S P ++ DY A E +K++ +++ R A L++RL + F +G
Sbjct: 3 SYPTVSADYQ-----KAVEKAKKKLR-GFIAEKRCAPLMLRLAAYSAGTFDKGTKTGGPF 56
Query: 88 DDTIDLQGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGP 147
TI + A + +A G I R+ ++++ P I+S AD +A A+ + GGP
Sbjct: 57 G-TI----KHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP 110
Query: 148 YWDVPVGRKDSKTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIG 204
GR+D + LP +G L + K GL+ D+VALSG HTIG
Sbjct: 111 EVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIG 165
Query: 205 MARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSF 264
A +++R + TS NPL +FDNS+
Sbjct: 166 AA----HKERSGFEGPWTS--NPL------------------------------IFDNSY 189
Query: 265 YQILLQG--EGVLN--SDQEMYSS-IFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
+ LL G EG+L SD+ + S +F + LV+KYA D AFF ++++ K+ +
Sbjct: 190 FTELLSGEKEGLLQLPSDKALLSDPVF----RPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 54/228 (23%)
Query: 99 ASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDS 158
A + +A G I R+ ++++ P I+S AD +A A+ + GGP GR+D
Sbjct: 75 AELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 133
Query: 159 KTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRI 215
+ LP +G L + K GL+ D+VALSG HTIG A +++R
Sbjct: 134 PEPP---PEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAA----HKERS 184
Query: 216 YGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG--EG 273
+ TS NPL +FDNS++ LL G EG
Sbjct: 185 GFEGPWTS--NPL------------------------------IFDNSYFTELLSGEKEG 212
Query: 274 VLN--SDQEMYSS-IFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
+L SD+ + S +F + LV+KYA D AFF ++++ K+ +
Sbjct: 213 LLQLPSDKALLSDPVF----RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 54/228 (23%)
Query: 99 ASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDS 158
A + +A G I R+ ++++ P I+S AD +A A+ + GGP GR+D
Sbjct: 75 AELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 133
Query: 159 KTASYALADSNLPSPDEG---LLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRI 215
+ LP +G L + K GL+ D+VALSG HTIG A +++R
Sbjct: 134 PEPP---PEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAA----HKERS 184
Query: 216 YGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG--EG 273
+ TS NPL +FDNS++ LL G EG
Sbjct: 185 GFEGPWTS--NPL------------------------------IFDNSYFTELLSGEKEG 212
Query: 274 VLN--SDQEMYSS-IFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
+L SD+ + S +F + LV+KYA D AFF ++++ K+ +
Sbjct: 213 LLQLPSDKALLSDPVF----RPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 113/272 (41%), Gaps = 57/272 (20%)
Query: 67 LIVRLHFHDCFV-----------QGCDGSVLLDDTIDLQGEKKASINRNALKGFRIIDRI 115
++VRL +HD G +GS+ D ++L K N + ++ I
Sbjct: 27 IMVRLGWHDAGTYNKNIEEWPQRGGANGSLRFD--VEL----KHGANAGLVNALNLLKPI 80
Query: 116 KNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASY-----ALADSNL 170
K+K V+ AD+ +A+ AI GGP + GR D L D+
Sbjct: 81 KDKYSG-----VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGP 135
Query: 171 PSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINPLSE 230
PSP + L + F+ GL+ ++VALSGAHT+G +R SG E
Sbjct: 136 PSPAQHLRDV---FYRMGLNDKEIVALSGAHTLGRSRPDR------------SGWG-KPE 179
Query: 231 THLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEG----VLNSDQEMYSSIF 286
T + P + TA + FDNS+++ + + VL +D ++
Sbjct: 180 TKYTKDGPGAP---GGQSWTAQWLK----FDNSYFKDIKERRDEDLLVLPTDAALFED-- 230
Query: 287 GIQTKELVNKYAHDALAFFQQFSDSMVKMGNI 318
K KYA D AFF+ ++++ K+ N+
Sbjct: 231 -PSFKVYAEKYAADPEAFFKDYAEAHAKLSNL 261
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 105/302 (34%), Gaps = 76/302 (25%)
Query: 44 PTAFEIVRKEMECAVLSDPRNAALIVRLHFH-----DCFVQGCDGS-----VLLDDTIDL 93
P +R ++E + ++RL +H DCF + DGS +
Sbjct: 6 PFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKPECLY 63
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
G K I R AL + +K K +S AD+ +AA AI +GGP
Sbjct: 64 AGNKGLDIPRKAL------ETLKKKYPQ-----ISYADLWVLAAYVAIEYMGGPTIPFCW 112
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRK 213
GR D+K S D LP + + F G + + VAL GAHT G
Sbjct: 113 GRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG--------- 163
Query: 214 RIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEG 273
ETH+ P D N FDNSF+ LL +
Sbjct: 164 ----------------ETHIE-FSGYHGPWTHDKNG----------FDNSFFTQLLDEDW 196
Query: 274 VLNSDQEMYSSIFGIQTK-----------------ELVNKYAHDALAFFQQFSDSMVKMG 316
VLN E + TK + V YA D F + F+++ K+
Sbjct: 197 VLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLT 256
Query: 317 NI 318
+
Sbjct: 257 EL 258
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 104/302 (34%), Gaps = 76/302 (25%)
Query: 44 PTAFEIVRKEMECAVLSDPRNAALIVRLHFH-----DCFVQGCDGS-----VLLDDTIDL 93
P +R ++E + ++RL +H DCF + DGS +
Sbjct: 5 PFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKPECLY 62
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
G K I R AL + +K K +S AD+ +AA AI +GGP
Sbjct: 63 AGNKGLDIPRKAL------ETLKKKYPQ-----ISYADLWVLAAYVAIEYMGGPTIPFCW 111
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRK 213
GR D+K S D LP + + F G + + VAL GAHT G
Sbjct: 112 GRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG--------- 162
Query: 214 RIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEG 273
E H+ P D N FDNSF+ LL +
Sbjct: 163 ----------------ECHIE-FSGYHGPWTHDKNG----------FDNSFFTQLLDEDW 195
Query: 274 VLNSDQEMYSSIFGIQTK-----------------ELVNKYAHDALAFFQQFSDSMVKMG 316
VLN E + TK + V YA D F + F+++ K+
Sbjct: 196 VLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLT 255
Query: 317 NI 318
+
Sbjct: 256 EL 257
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 104/302 (34%), Gaps = 76/302 (25%)
Query: 44 PTAFEIVRKEMECAVLSDPRNAALIVRLHFH-----DCFVQGCDGS-----VLLDDTIDL 93
P +R ++E + ++RL +H DCF + DGS +
Sbjct: 6 PFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKPECLY 63
Query: 94 QGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPV 153
G K I R AL + +K K +S AD+ +AA AI +GGP
Sbjct: 64 AGNKGLDIPRKAL------ETLKKKYPQ-----ISYADLWVLAAYVAIEYMGGPTIPFCW 112
Query: 154 GRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRK 213
GR D+K S D LP + + F G + + VAL GAHT G
Sbjct: 113 GRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG--------- 163
Query: 214 RIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEG 273
E H+ P D N FDNSF+ LL +
Sbjct: 164 ----------------ECHIE-FSGYHGPWTHDKNG----------FDNSFFTQLLDEDW 196
Query: 274 VLNSDQEMYSSIFGIQTK-----------------ELVNKYAHDALAFFQQFSDSMVKMG 316
VLN E + TK + V YA D F + F+++ K+
Sbjct: 197 VLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLT 256
Query: 317 NI 318
+
Sbjct: 257 EL 258
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAHT+G
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL G + TA PN+FDNSFY LL + L +++ E + S
Sbjct: 179 --KTHLKN-------SGYEGPWTA----NPNVFDNSFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VALSGAHT+G
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P ++ N+FDNSFY LL + L +++ E + S
Sbjct: 179 --KTHLKNSGYEGPWTANN-----------NVFDNSFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAHT+G
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P ++N +FDNSFY LL + L +++ E + S
Sbjct: 179 --KTHLKNSGYEGPWTANNN-----------VFDNSFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAHT+G
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P ++N +FDNSFY LL + L +++ E + S
Sbjct: 179 --KTHLKNSGYEGPWTANNN-----------VFDNSFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAHT+G
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL + E D T N+FDNSFY LL + L +++ E + S
Sbjct: 179 --KTHLK----------NSGYEGPWD-ATNNVFDNSFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 100/269 (37%), Gaps = 60/269 (22%)
Query: 65 AALIVRLHFH--DCFVQGCDGSVLLDDTIDLQGEKKASINRNALKGFRIIDRIKNKIESD 122
++VRL FH + + + T + E N GF+ ++ I +
Sbjct: 45 GPVLVRLAFHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 123 CPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALADSNLPSPDEGLLSIIS 182
+S D+ ++ A+ + GP GR D+ + + LP D+ + +
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDNGRLPDADKDAGYVRT 158
Query: 183 KFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPP 242
F ++ ++VAL GAH +G +THL P
Sbjct: 159 FFQRLNMNDREVVALMGAHALG-------------------------KTHLKN-SGYEGP 192
Query: 243 IGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSSIFG----------IQ 289
G+ N N+F N FY LL + L +++ E + S G IQ
Sbjct: 193 WGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQ 242
Query: 290 TKE---LVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 243 DPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G N G Y + +
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--SGYEGPYGAANNVF- 195
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFG 287
+E +L++L +D N D ++ G +L +D YS I
Sbjct: 196 TNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTD---YSLIQD 238
Query: 288 IQTKELVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 81 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 134
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 135 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 171
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 172 --KTHLK-RSGYEGPFGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 218
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 219 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 262
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALG----------------------- 175
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 176 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 222
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 223 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 87 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 140
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 141 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 177
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 178 --KTHLK-RSGYEGPFGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 224
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 225 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKL 268
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 180
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 181 --KTHLKN-SGYEGPFGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 228 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 28/208 (13%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 144
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G N G V +
Sbjct: 145 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFT---- 200
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFG 287
+E +L++L +D N D ++ G +L +D YS I
Sbjct: 201 -NEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTD---YSLIQD 242
Query: 288 IQTKELVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 243 PKYLSIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 139 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 175
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 176 --KTHLK-RSGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 222
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 223 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLK-RSGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTXYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 28/208 (13%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G N G V +
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFT---- 194
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFG 287
+E +L++L +D N D ++ G +L +D YS I
Sbjct: 195 -NEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTD---YSLIQD 236
Query: 288 IQTKELVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 237 PKYLSIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 144 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 180
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 181 --KTHLK-RSGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 228 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G N G + + +
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--SGYEGPWGAANNVF- 195
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFG 287
+E +L++L +D N D ++ G +L +D YS I
Sbjct: 196 TNEKYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTD---YSLIQD 238
Query: 288 IQTKELVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 28/208 (13%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 139
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G N G V +
Sbjct: 140 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFT---- 195
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFG 287
+E +L++L +D N D ++ G +L +D YS I
Sbjct: 196 -NEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTD---YSLIQD 237
Query: 288 IQTKELVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 238 PKYLSIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 90/242 (37%), Gaps = 58/242 (23%)
Query: 90 TIDLQGEKKASINRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYW 149
T + E N GF+ ++ I + +S D+ ++ A+ + GP
Sbjct: 72 TYRFKKEFNDPWNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 150 DVPVGRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCV 209
GR D+ + + LP D+ + + F ++ ++VAL GAH +G
Sbjct: 127 PWRCGRVDTPEDT-TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 210 NYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILL 269
+THL P G+ N N+F N FY LL
Sbjct: 181 --------------------KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLL 209
Query: 270 QGEGVL---NSDQEMYSSIFG----------IQTKE---LVNKYAHDALAFFQQFSDSMV 313
+ L +++ E + S G IQ + +V +YA+D FF+ FS +
Sbjct: 210 NEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 314 KM 315
K+
Sbjct: 270 KL 271
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 87 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 140
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 141 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 177
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 178 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 224
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 225 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 268
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 180
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 181 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 228 KSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 175
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 176 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 222
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 223 KSGYMHLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 180
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 181 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 228 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 144
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 145 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 181
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 182 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 228
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 229 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 144
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 145 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 181
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 182 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 228
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 229 KSGYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 180
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 181 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 228 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 180
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 181 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 228 KSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 180
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 181 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 228 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 144
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 145 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 181
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 182 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 228
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 229 KSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 175
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 176 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 222
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 223 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G N SG
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTELKN------------SGYE- 185
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
P G+ N N+F N FY LL + L +++ E + S
Sbjct: 186 -------------GPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 222
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 223 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 180
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 181 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 228 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 175
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 176 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 222
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 223 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 175
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 176 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 222
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 223 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G N G + + +
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--SGYEGPWGAANNVF- 198
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFG 287
+E +L++L +D N D ++ G +L +D YS I
Sbjct: 199 TNEGYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTD---YSLIQD 241
Query: 288 IQTKELVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G N G + + +
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--SGYEGPWGAANNVF- 195
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFG 287
+E +L++L +D N D ++ G +L +D YS I
Sbjct: 196 TNEYYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTD---YSLIQD 238
Query: 288 IQTKELVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G N G + + +
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--SGYEGPWGCANNVF- 200
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFG 287
+E +L++L +D N D ++ G +L +D YS I
Sbjct: 201 TNEFYLNLLNEDWKLEKNDANNEQWDSKS--------------GYMMLPTD---YSLIQD 243
Query: 288 IQTKELVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 244 PKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G R G + + +
Sbjct: 144 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK--RSGYEGPWGAANNVF- 200
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFG 287
+E +L++L +D N D ++ G +L +D YS I
Sbjct: 201 TNEFYLNLLNENWKLEKNDANNEQWDSKS--------------GYMMLPTD---YSLIQD 243
Query: 288 IQTKELVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 244 PKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G R G + + +
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK--RSGYEGPWGAANNVF- 198
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFG 287
+E +L++L +D N D ++ G +L +D YS I
Sbjct: 199 TNEFYLNLLNENWKLEKNDANNEQWDSKS--------------GYMMLPTD---YSLIQD 241
Query: 288 IQTKELVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPWGAAN----------NCFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G N G + + +
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--SGYEGPWGAANNVF- 198
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFG 287
+E +L++L +D N D ++ G +L +D YS I
Sbjct: 199 TNEFYLNLLNENWKLEKNDANNEQWDSKS--------------GYMMLPTD---YSLIQD 241
Query: 288 IQTKELVNKYAHDALAFFQQFSDSMVKM 315
+ +V +YA+D FF+ FS + K+
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 175
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 176 --KTHLKN-SGYEGPQGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 222
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 223 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 180
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 181 --KTHLKN-SGYEGPQGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 228 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 144 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----------------------- 180
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 181 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 228 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPGGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPGGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 143
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 180
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 181 --KTHLKN-SGYEGPGGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 228 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 175
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 176 --KTHLKN-SGYEGPGGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 222
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 223 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 139
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 140 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 176
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 177 --KTHLKN-SGYEGPGGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 223
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 224 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 141
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GAH +G
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----------------------- 178
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 179 --KTHLKN-SGYEGPGGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPEPQD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPEPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V+L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVSLLASHSIAAADKVD 178
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPGPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAADGVD 178
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPEPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAADGVD 178
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPEPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAAAKVD 178
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPEPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPEPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPEPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPEPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPGPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPGPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPEPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPEPFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVYLLASHSIAAADKVD 178
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 138
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GA +G
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALG----------------------- 175
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 176 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 222
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 223 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 139
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GA +G
Sbjct: 140 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALG----------------------- 176
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 177 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 223
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 224 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 58/224 (25%)
Query: 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALAD 167
GF+ ++ I + +S D+ ++ A+ + GP GR D+ + +
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT-TPDN 139
Query: 168 SNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINP 227
LP D+ + + F ++ ++VAL GA +G
Sbjct: 140 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALG----------------------- 176
Query: 228 LSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVL---NSDQEMYSS 284
+THL P G+ N N+F N FY LL + L +++ E + S
Sbjct: 177 --KTHLKN-SGYEGPWGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDS 223
Query: 285 IFG----------IQTKE---LVNKYAHDALAFFQQFSDSMVKM 315
G IQ + +V +YA+D FF+ FS + K+
Sbjct: 224 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1J2Y|A Chain A, Crystal Structure Of The Type Ii 3-Dehydroquinase
pdb|2C4V|A Chain A, H. Pylori Type Ii Dhqase In Complex With Citrate
pdb|2WKS|A Chain A, Structure Of Helicobacter Pylori Type Ii Dehydroquinase
With A New Carbasugar-Thiophene Inhibitor.
pdb|2WKS|B Chain B, Structure Of Helicobacter Pylori Type Ii Dehydroquinase
With A New Carbasugar-Thiophene Inhibitor.
pdb|2WKS|C Chain C, Structure Of Helicobacter Pylori Type Ii Dehydroquinase
With A New Carbasugar-Thiophene Inhibitor.
pdb|2WKS|D Chain D, Structure Of Helicobacter Pylori Type Ii Dehydroquinase
With A New Carbasugar-Thiophene Inhibitor.
pdb|2WKS|E Chain E, Structure Of Helicobacter Pylori Type Ii Dehydroquinase
With A New Carbasugar-Thiophene Inhibitor.
pdb|2WKS|F Chain F, Structure Of Helicobacter Pylori Type Ii Dehydroquinase
With A New Carbasugar-Thiophene Inhibitor.
pdb|2XB9|A Chain A, Structure Of Helicobacter Pylori Type Ii Dehydroquinase In
Complex With Inhibitor Compound
(2r)-2-(4-Methoxybenzyl)-3- Dehydroquinic Acid
pdb|2XB9|B Chain B, Structure Of Helicobacter Pylori Type Ii Dehydroquinase In
Complex With Inhibitor Compound
(2r)-2-(4-Methoxybenzyl)-3- Dehydroquinic Acid
pdb|2XB9|C Chain C, Structure Of Helicobacter Pylori Type Ii Dehydroquinase In
Complex With Inhibitor Compound
(2r)-2-(4-Methoxybenzyl)-3- Dehydroquinic Acid
pdb|2XD9|A Chain A, Structure Of Helicobacter Pylori Type Ii Dehydroquinase In
Complex With Inhibitor Compound
(4r,6r,7s)-4,6,7-Trihydroxy-2-((E)-Prop-1-
Enyl)-4,5,6,7-Tetrahydrobenzo(B) Thiophene-4-Carboxylic
Acid
pdb|2XD9|B Chain B, Structure Of Helicobacter Pylori Type Ii Dehydroquinase In
Complex With Inhibitor Compound
(4r,6r,7s)-4,6,7-Trihydroxy-2-((E)-Prop-1-
Enyl)-4,5,6,7-Tetrahydrobenzo(B) Thiophene-4-Carboxylic
Acid
pdb|2XD9|C Chain C, Structure Of Helicobacter Pylori Type Ii Dehydroquinase In
Complex With Inhibitor Compound
(4r,6r,7s)-4,6,7-Trihydroxy-2-((E)-Prop-1-
Enyl)-4,5,6,7-Tetrahydrobenzo(B) Thiophene-4-Carboxylic
Acid
pdb|2XDA|A Chain A, Structure Of Helicobacter Pylori Type Ii Dehydroquinase In
Complex With Inhibitor Compound
(4r,6r,7s)-2-(2-Cyclopropyl)ethyl-4,6,7-
Trihydroxy-4,5,6,7-Tetrahydrobenzo(
B)thiophene-4-Carboxylic Acid
pdb|4B6R|A Chain A, Structure Of Mycobacterium Tuberculosis Type Ii
Dehydroquinase Inhibited By
(2s)-2-(4-Methoxy)benzyl-3-Dehydroquinic Acid
pdb|4B6R|B Chain B, Structure Of Mycobacterium Tuberculosis Type Ii
Dehydroquinase Inhibited By
(2s)-2-(4-Methoxy)benzyl-3-Dehydroquinic Acid
pdb|4B6R|C Chain C, Structure Of Mycobacterium Tuberculosis Type Ii
Dehydroquinase Inhibited By
(2s)-2-(4-Methoxy)benzyl-3-Dehydroquinic Acid
pdb|4B6S|A Chain A, Structure Of Mycobacterium Tuberculosis Type Ii
Dehydroquinase Inhibited By
(2s)-2-Perfluorobenzyl-3-Dehydroquinic Acid
pdb|4B6S|B Chain B, Structure Of Mycobacterium Tuberculosis Type Ii
Dehydroquinase Inhibited By
(2s)-2-Perfluorobenzyl-3-Dehydroquinic Acid
pdb|4B6S|C Chain C, Structure Of Mycobacterium Tuberculosis Type Ii
Dehydroquinase Inhibited By
(2s)-2-Perfluorobenzyl-3-Dehydroquinic Acid
Length = 167
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 110 RIIDRIKNKIESDCPGIV---SCADILTIAARDAIILVGGPYWDVPV----GRKDSKTAS 162
IID+I+ + SD GI+ +IA DAI+L G P +V + R++ + S
Sbjct: 57 EIIDKIQESVGSDYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNS 116
Query: 163 YALA 166
Y A
Sbjct: 117 YTGA 120
>pdb|2C57|A Chain A, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
pdb|2C57|B Chain B, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
pdb|2C57|C Chain C, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
pdb|2C57|D Chain D, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
pdb|2C57|E Chain E, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
pdb|2C57|F Chain F, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
pdb|2C57|G Chain G, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
pdb|2C57|H Chain H, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
pdb|2C57|I Chain I, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
pdb|2C57|J Chain J, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
pdb|2C57|K Chain K, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
pdb|2C57|L Chain L, H.Pylori Type Ii Dehydroquinase In Complex With Fa1
Length = 180
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 110 RIIDRIKNKIESDCPGIV---SCADILTIAARDAIILVGGPYWDVPV----GRKDSKTAS 162
IID+I+ + SD GI+ +IA DAI+L G P +V + R++ + S
Sbjct: 70 EIIDKIQESVGSDYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNS 129
Query: 163 YALA 166
Y A
Sbjct: 130 YTGA 133
>pdb|3IYK|A Chain A, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|B Chain B, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|C Chain C, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|D Chain D, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|E Chain E, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|F Chain F, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
Length = 526
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 190 SVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNE 249
+ ++ V L GA GMA V + I G Y++ IN LS L+ L++ P I
Sbjct: 230 AASEEVPLIGA---GMATAVATGRAIEGAYKLKKVINALSGIDLTHLRT--PKIEPSVVS 284
Query: 250 TAMDYETPNLFDNSF 264
T ++Y + DN+
Sbjct: 285 TILEYRAKEIPDNAL 299
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 69 VRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKI 119
+RL FHD G DGS++ DTI+ A I+ +A K F I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNI---- 97
Query: 120 ESDCPGIVSCADILTIAARDAIILVGG----PYWDVPVGRKDSKTASYALADSNLPSPDE 175
S D + A + G P++ +GR D+ AS D +P +
Sbjct: 98 --------SAGDFIQFAGAVGVSNCPGGVRIPFF---LGRPDAVAAS---PDHLVPEGFD 143
Query: 176 GLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVN 210
+ SI+++ G S ++V L +H+I A V+
Sbjct: 144 SVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1IWP|L Chain L, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1MMF|A Chain A, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
pdb|1MMF|L Chain L, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
Length = 555
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 152 PVGRKDSKTASYALADSNLPS----PDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMAR 207
P+ ++ + A+YA + +P D + + K + GL + ++ SG I
Sbjct: 431 PIADEEVEAATYAHGSNEMPPRNVVEDLSAVEEMMKRNITGLDIVGALSRSGFEDIASNI 490
Query: 208 CVNYRKRIYGDYRVTSGI 225
R+R+ GDY TS I
Sbjct: 491 LNMLRQRVTGDYLQTSAI 508
>pdb|2RFT|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lsta Receptor Analog
pdb|2RFU|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lstc Receptor Analog
Length = 176
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 199 GAHTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNET-AMDYETP 257
GAH G+A + + ++T +N LSE + L+ + + +NE +D +
Sbjct: 28 GAH--GVAVAADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVD 85
Query: 258 NLFDNSF-----YQILLQGEGVLNSDQE 280
+L ++ +LL EG++NS+ E
Sbjct: 86 DLRADTISSQIELAVLLSNEGIINSEDE 113
>pdb|3BT6|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin
Length = 169
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 199 GAHTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNET-AMDYETP 257
GAH G+A + + ++T +N LSE + L+ + + +NE +D +
Sbjct: 28 GAH--GVAVAADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVD 85
Query: 258 NLFDNSF-----YQILLQGEGVLNSDQE 280
+L ++ +LL EG++NS+ E
Sbjct: 86 DLRADTISSQIELAVLLSNEGIINSEDE 113
>pdb|4FQK|B Chain B, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
pdb|4FQK|D Chain D, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
pdb|4FQM|B Chain B, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|D Chain D, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|F Chain F, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|H Chain H, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|J Chain J, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|L Chain L, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
Length = 179
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 199 GAHTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNET-AMDYETP 257
GAH G+A + + ++T +N LSE + L+ + + +NE +D +
Sbjct: 28 GAH--GVAVAADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVD 85
Query: 258 NLFDNSF-----YQILLQGEGVLNSDQE 280
+L ++ +LL EG++NS+ E
Sbjct: 86 DLRADTISSQIELAVLLSNEGIINSEDE 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,950,399
Number of Sequences: 62578
Number of extensions: 402794
Number of successful extensions: 1073
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 162
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)