Query 043984
Match_columns 338
No_of_seqs 196 out of 1511
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 4E-107 9E-112 778.4 25.0 299 30-337 21-324 (324)
2 cd00693 secretory_peroxidase H 100.0 6E-101 1E-105 733.8 24.5 298 33-336 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 5.9E-72 1.3E-76 517.5 16.0 229 50-300 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.6E-69 3.4E-74 512.3 22.5 232 48-334 15-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 3.1E-67 6.7E-72 491.4 22.0 230 45-321 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.6E-65 3.5E-70 478.2 21.3 231 37-321 4-248 (250)
7 cd00692 ligninase Ligninase an 100.0 1.7E-63 3.8E-68 478.9 22.4 236 46-337 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 2.1E-63 4.5E-68 463.4 21.4 220 48-321 18-248 (251)
9 cd00314 plant_peroxidase_like 100.0 1.9E-59 4.1E-64 439.9 19.6 224 49-317 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 6.6E-57 1.4E-61 439.8 20.3 268 39-327 35-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 8.2E-54 1.8E-58 441.8 20.5 263 39-322 45-404 (716)
12 PRK15061 catalase/hydroperoxid 100.0 1.6E-50 3.5E-55 415.3 20.8 255 48-323 57-411 (726)
13 cd08201 plant_peroxidase_like_ 100.0 6.2E-50 1.3E-54 372.7 11.8 218 51-317 28-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 9.2E-40 2E-44 308.0 18.3 221 52-319 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 9.9E-35 2.1E-39 300.4 18.0 220 49-319 429-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 3.5E-34 7.6E-39 294.9 18.5 220 52-319 442-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 5.4E-31 1.2E-35 260.4 16.8 255 48-319 70-416 (730)
18 COG0376 KatG Catalase (peroxid 99.5 5.5E-13 1.2E-17 133.3 12.6 216 52-319 452-725 (730)
19 PTZ00411 transaldolase-like pr 68.7 42 0.0009 33.2 9.8 132 143-309 179-327 (333)
20 PRK12346 transaldolase A; Prov 58.3 66 0.0014 31.6 9.0 76 108-191 138-219 (316)
21 PRK05269 transaldolase B; Prov 54.4 86 0.0019 30.8 9.1 138 142-308 168-313 (318)
22 TIGR00874 talAB transaldolase. 51.9 95 0.0021 30.5 8.9 132 140-306 164-311 (317)
23 PF11895 DUF3415: Domain of un 49.5 15 0.00032 28.8 2.3 17 304-320 3-19 (80)
24 cd00957 Transaldolase_TalAB Tr 45.1 82 0.0018 30.9 7.3 48 144-192 168-219 (313)
25 PRK12309 transaldolase/EF-hand 40.9 2.7E+02 0.0059 28.1 10.5 48 143-191 173-224 (391)
26 COG3763 Uncharacterized protei 34.2 1E+02 0.0023 23.6 4.8 29 49-77 24-52 (71)
27 PRK01844 hypothetical protein; 27.5 1.3E+02 0.0028 23.2 4.3 29 49-77 24-52 (72)
28 PF00043 GST_C: Glutathione S- 23.6 1.4E+02 0.0031 22.3 4.2 39 107-145 35-73 (95)
29 KOG4052 Uncharacterized conser 22.1 1.8E+02 0.0038 26.1 4.8 52 7-62 3-54 (190)
30 PRK00523 hypothetical protein; 21.9 1.9E+02 0.004 22.3 4.3 29 49-77 25-53 (72)
31 cd00439 Transaldolase Transald 21.3 84 0.0018 29.7 2.9 77 107-192 127-210 (252)
32 PF04225 OapA: Opacity-associa 20.7 61 0.0013 25.4 1.5 24 178-201 11-34 (85)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=3.9e-107 Score=778.39 Aligned_cols=299 Identities=38% Similarity=0.701 Sum_probs=284.1
Q ss_pred CCCCCChhhhhcCCccHHHHHHHHHHHHHHcCCCchhhHHHHHhhcccccCCCCccccCCCCCcccccccccccccchhH
Q 043984 30 SEPYLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDLQGEKKASINRNALKGF 109 (338)
Q Consensus 30 ~~~~L~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSill~~~~~~~~E~~~~~N~~~~~g~ 109 (338)
++++|+++||++|||++|+||+++|++++.+||+++|++|||+||||||+||||||||+++ .+||++++|. +++||
T Consensus 21 ~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~-~l~Gf 96 (324)
T PLN03030 21 QGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNL-LLRGY 96 (324)
T ss_pred hhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCc-CcchH
Confidence 4567999999999999999999999999999999999999999999999999999999865 3699999998 68999
Q ss_pred HHHHHHHHHhhhcCCCccchHHHHHHHHHhHHHhhCCCcccccCCcCCCCcchhhcccCCCCCCCCCHHHHHHHHHHCCC
Q 043984 110 RIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGL 189 (338)
Q Consensus 110 ~~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl 189 (338)
++|+.||+++|++||++|||||||++||||||+++|||.|+|++||||+++|...++. +||+|+.++++|++.|+++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999877775 899999999999999999999
Q ss_pred ChhhhhhcccccccccccccccccccccCCCCC-CCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCccChHHHHHh
Q 043984 190 SVTDMVALSGAHTIGMARCVNYRKRIYGDYRVT-SGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQIL 268 (338)
Q Consensus 190 ~~~elVaLsGaHTiG~~hc~~f~~Rl~~~~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l 268 (338)
+.+|||+||||||||++||.+|.+|||||.+++ .+||+||+.|++.|++.||..++..+.+++|+.||.+|||+||+||
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nl 255 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNL 255 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHH
Confidence 999999999999999999999999999999875 5899999999999999999643333468899999999999999999
Q ss_pred hcCcccccchhhhhcCCcchhHHHHHHHhhhCH----HHHHHHHHHHHHHhhcCCCCCCCCCCeecccccCCC
Q 043984 269 LQGEGVLNSDQEMYSSIFGIQTKELVNKYAHDA----LAFFQQFSDSMVKMGNITNPESFVNGEVRKNCRFVN 337 (338)
Q Consensus 269 ~~~~glL~SD~~L~~d~~~~~t~~~V~~yA~~~----~~F~~~Fa~Am~Km~~igvltG~~~GeIR~~C~~vn 337 (338)
++++|+|+|||+|++|+ +|+++|++||.|+ +.|+++|++||+|||+|+|||| ++|||||+|+++|
T Consensus 256 l~~rGlL~SDq~L~~d~---~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG-~~GEIRk~C~~vN 324 (324)
T PLN03030 256 KNGRGILESDQKLWTDA---STRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTG-TNGEIRKVCSAIN 324 (324)
T ss_pred HhcCCCcCCchHhhcCc---cHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCC-CCCceeccccccC
Confidence 99999999999999999 9999999999875 5999999999999999999999 9999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=6.2e-101 Score=733.82 Aligned_cols=298 Identities=49% Similarity=0.830 Sum_probs=288.0
Q ss_pred CCChhhhhcCCccHHHHHHHHHHHHHHcCCCchhhHHHHHhhcccccCCCCccccCCCCCcccccccccccccchhHHHH
Q 043984 33 YLTLDYYAKTCPTAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDDTIDLQGEKKASINRNALKGFRII 112 (338)
Q Consensus 33 ~L~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I 112 (338)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++.++.+|+++++|. +++||++|
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i 79 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVI 79 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHH
Confidence 59999999999999999999999999999999999999999999999999999999888888999999999 57999999
Q ss_pred HHHHHHhhhcCCCccchHHHHHHHHHhHHHhhCCCcccccCCcCCCCcchhhcccCCCCCCCCCHHHHHHHHHHCCCChh
Q 043984 113 DRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVT 192 (338)
Q Consensus 113 ~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 192 (338)
+.||+++|++||++|||||||+||||+||+.+|||.|+|++||+|+.++.+..+ +.||.|+.+++++++.|+++||+++
T Consensus 80 ~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~ 158 (298)
T cd00693 80 DDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVT 158 (298)
T ss_pred HHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999999999999999999999999998877665 7899999999999999999999999
Q ss_pred hhhhcccccccccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCccChHHHHHhhcCc
Q 043984 193 DMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGE 272 (338)
Q Consensus 193 elVaLsGaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~ 272 (338)
|||||+||||||++||.+|.+|||||+|++.+||+||+.|+..|++.||..+++.+.+++|+.||.+|||+||+||+.++
T Consensus 159 d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~ 238 (298)
T cd00693 159 DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR 238 (298)
T ss_pred HheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999997655566889999999999999999999999
Q ss_pred ccccchhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCCCCCCCCeecccccCC
Q 043984 273 GVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRKNCRFV 336 (338)
Q Consensus 273 glL~SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~igvltG~~~GeIR~~C~~v 336 (338)
|+|+|||+|+.|+ +|+++|++||.||+.|+++|++||+||++|+|+|| .+|||||+|+.|
T Consensus 239 glL~SD~~L~~d~---~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg-~~GeiR~~C~~~ 298 (298)
T cd00693 239 GLLTSDQALLSDP---RTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTG-SQGEIRKNCRVV 298 (298)
T ss_pred cCccCCHHhccCc---cHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccC-CCCccCCccccC
Confidence 9999999999999 99999999999999999999999999999999999 999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=5.9e-72 Score=517.53 Aligned_cols=229 Identities=48% Similarity=0.810 Sum_probs=210.0
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHhhcccc-cCCCCccccCCCCCcccccccccccccchhHHHHHHHHHHhhhcCCCccc
Q 043984 50 VRKEMECAVLSDPRNAALIVRLHFHDCFV-QGCDGSVLLDDTIDLQGEKKASINRNALKGFRIIDRIKNKIESDCPGIVS 128 (338)
Q Consensus 50 V~~~v~~~~~~~~~~aa~llRL~FHDcfv-~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~le~~cp~~VS 128 (338)
||++|++++.++++++|++|||+|||||+ +|||||||+. ..|+++++|.++.+++++|+.||+++|++||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 79999999999999999999999999999 9999999983 56999999997656999999999999999999999
Q ss_pred hHHHHHHHHHhHHHhhCCCcccccCCcCCCCcchhhcccCCCCCCCCCHHHHHHHHHHCCCChhhhhhcccccccccccc
Q 043984 129 CADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARC 208 (338)
Q Consensus 129 cADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaLsGaHTiG~~hc 208 (338)
|||||+|||++||+.+|||.|+|++||+|+.+++..++ .+||.|+.++++|++.|+++|||++|||||+||||||++||
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999999998777 78999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCccChHHHHHhhcCcccccchhhhhcCCcch
Q 043984 209 VNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFGI 288 (338)
Q Consensus 209 ~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~~~ 288 (338)
.+|. ||| + .+||+||+.|+.. .| ..++++ .+++| ||.+|||+||+++++++|+|+||++|++|+
T Consensus 155 ~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~--- 218 (230)
T PF00141_consen 155 SSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDP--- 218 (230)
T ss_dssp GCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHST---
T ss_pred cccc-ccc-c----cccccccccccee---cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCH---
Confidence 9999 999 5 5799999999988 99 333333 78888 999999999999999999999999999999
Q ss_pred hHHHHHHHhhhC
Q 043984 289 QTKELVNKYAHD 300 (338)
Q Consensus 289 ~t~~~V~~yA~~ 300 (338)
+|+++|++||+|
T Consensus 219 ~t~~~V~~yA~d 230 (230)
T PF00141_consen 219 ETRPIVERYAQD 230 (230)
T ss_dssp THHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.6e-69 Score=512.29 Aligned_cols=232 Identities=30% Similarity=0.454 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHhhccc-------ccCCCCccccCCCCCcccccccccccccchhHHHHHHHHHHhh
Q 043984 48 EIVRKEMECAVLSDPRNAALIVRLHFHDCF-------VQGCDGSVLLDDTIDLQGEKKASINRNALKGFRIIDRIKNKIE 120 (338)
Q Consensus 48 ~iV~~~v~~~~~~~~~~aa~llRL~FHDcf-------v~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~le 120 (338)
+.+++++ ..+.++|.++|.+|||+||||| ++||||||++. +|+++++|.++.+||++|+.||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc-
Confidence 3556667 4477799999999999999999 89999999983 5999999996557999999999997
Q ss_pred hcCCCccchHHHHHHHHHhHHHhhCCCcccccCCcCCCCcchhhcccCCCCCCCCCHHHHHHHHHHCCCChhhhhhcccc
Q 043984 121 SDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGA 200 (338)
Q Consensus 121 ~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaLsGa 200 (338)
++|||||||+||||+||+.+|||.|+|++||+|+.+++ ++++||+|+.+++++++.|+++||+++|||+|+||
T Consensus 87 ----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGA 159 (289)
T PLN02608 87 ----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGG 159 (289)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccc
Confidence 48999999999999999999999999999999999985 35689999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCccChHHHHHhhcC--ccc--cc
Q 043984 201 HTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG--EGV--LN 276 (338)
Q Consensus 201 HTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl--L~ 276 (338)
||||++||. |+ +|.|. ++ .||.+|||+||+|++.+ +|+ |+
T Consensus 160 HTiG~ahc~----r~-g~~g~------------------------------~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~ 203 (289)
T PLN02608 160 HTLGRAHPE----RS-GFDGP------------------------------WT-KEPLKFDNSYFVELLKGESEGLLKLP 203 (289)
T ss_pred ccccccccc----CC-CCCCC------------------------------CC-CCCCccChHHHHHHHcCCcCCccccc
Confidence 999999995 54 44221 12 69999999999999999 788 79
Q ss_pred chhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCCCCCCCCeeccccc
Q 043984 277 SDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEVRKNCR 334 (338)
Q Consensus 277 SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~igvltG~~~GeIR~~C~ 334 (338)
|||+|+.|+ +|+.+|+.||.||+.|+++|++||+||++|+|+|| ++||+.+.-+
T Consensus 204 SD~~L~~d~---~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg-~~Ge~~~~~~ 257 (289)
T PLN02608 204 TDKALLEDP---EFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPP-SSAFKKKSTS 257 (289)
T ss_pred cCHhhhcCh---hHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCC-CCCcccccCc
Confidence 999999999 99999999999999999999999999999999999 9999988653
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=3.1e-67 Score=491.36 Aligned_cols=230 Identities=27% Similarity=0.397 Sum_probs=209.4
Q ss_pred cHHHHHHHHHHHHHHcCCCchhhHHHHHhhcccccCCCCccccCC---CCCcccccccccccccchhHHHHHHHHHHhhh
Q 043984 45 TAFEIVRKEMECAVLSDPRNAALIVRLHFHDCFVQGCDGSVLLDD---TIDLQGEKKASINRNALKGFRIIDRIKNKIES 121 (338)
Q Consensus 45 ~~e~iV~~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSill~~---~~~~~~E~~~~~N~~~~~g~~~I~~iK~~le~ 121 (338)
..++||+++|++.+. +++++|++|||+|||||+ ||+|+++++ +..+.+|+++++|.++.+||++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 347899999999999 999999999999999994 888887743 344567999999997669999999999987
Q ss_pred cCCCccchHHHHHHHHHhHHHhhCCCcccccCCcCCCCcchhhcccCCCCCCCCCHHHHHHHHHHCCCChhhhhhccccc
Q 043984 122 DCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGAH 201 (338)
Q Consensus 122 ~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaLsGaH 201 (338)
| +|||||||+||||+||+.+|||.|+|++||+|+.++....++.+||.|+.+++++++.|+++||+++|||+|+|||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 4 8999999999999999999999999999999999998777888999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCccChHHHHHhhcCcc--------
Q 043984 202 TIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEG-------- 273 (338)
Q Consensus 202 TiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g-------- 273 (338)
|||++||.. ++|.|+ |..||.+|||+||+||+.++|
T Consensus 163 TiG~a~c~~-----~~~~g~-------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~ 206 (253)
T cd00691 163 TLGRCHKER-----SGYDGP-------------------------------WTKNPLKFDNSYFKELLEEDWKLPTPGLL 206 (253)
T ss_pred eeecccccC-----CCCCCC-------------------------------CCCCCCcccHHHHHHHhcCCCccCcCcce
Confidence 999999953 243321 115999999999999999999
Q ss_pred cccchhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCC
Q 043984 274 VLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNP 321 (338)
Q Consensus 274 lL~SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~igvl 321 (338)
+|+||++|+.|+ +|+.+|+.||.|++.|+++|++||+||+++||.
T Consensus 207 ~L~sD~~L~~d~---~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 207 MLPTDKALLEDP---KFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred echhhHHHHcCc---cHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999 999999999999999999999999999999985
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.6e-65 Score=478.20 Aligned_cols=231 Identities=31% Similarity=0.506 Sum_probs=207.4
Q ss_pred hhhhcC--CccHHHHHHHHHHHHHHcCCCchhhHHHHHhh-----ccccc--CCCCccccCCCCCcccccccccccccch
Q 043984 37 DYYAKT--CPTAFEIVRKEMECAVLSDPRNAALIVRLHFH-----DCFVQ--GCDGSVLLDDTIDLQGEKKASINRNALK 107 (338)
Q Consensus 37 ~fY~~s--CP~~e~iV~~~v~~~~~~~~~~aa~llRL~FH-----Dcfv~--GcDgSill~~~~~~~~E~~~~~N~~~~~ 107 (338)
+||... |+++++.++..+++.+ .+++++|.+|||+|| ||+++ ||||||.+ .+|+++++|.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~~ 76 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIHI 76 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHHH
Confidence 566533 8888999999999977 789999999999999 88876 99999944 46999999997669
Q ss_pred hHHHHHHHHHHhhhcCCCccchHHHHHHHHHhHHHhhCCCcccccCCcCCCCcchhhcccCCCCCCCCCHHHHHHHHHH-
Q 043984 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALADSNLPSPDEGLLSIISKFHY- 186 (338)
Q Consensus 108 g~~~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~- 186 (338)
||++|+.||+++ ++|||||||+||||+||+.+|||.|+|++||+|+.+++. .++||.|+.++++|++.|++
T Consensus 77 ~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~~ 148 (250)
T PLN02364 77 ALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAKQ 148 (250)
T ss_pred HHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHHh
Confidence 999999999998 589999999999999999999999999999999999863 46899999999999999997
Q ss_pred CCCChhhhhhcccccccccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCccChHHHH
Q 043984 187 QGLSVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQ 266 (338)
Q Consensus 187 ~Gl~~~elVaLsGaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~ 266 (338)
+||+++|||||+||||||++|| .|+ +|.|. ++ .||.+|||+||+
T Consensus 149 ~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~------------------------------~~-~tp~~fDn~Yy~ 192 (250)
T PLN02364 149 MGLSDKDIVALSGAHTLGRCHK----DRS-GFEGA------------------------------WT-SNPLIFDNSYFK 192 (250)
T ss_pred cCCCHHHheeeecceeeccccC----CCC-CCCCC------------------------------CC-CCCCccchHHHH
Confidence 6999999999999999999999 354 44221 12 699999999999
Q ss_pred HhhcC--ccccc--chhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCC
Q 043984 267 ILLQG--EGVLN--SDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNP 321 (338)
Q Consensus 267 ~l~~~--~glL~--SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~igvl 321 (338)
+|+.+ +|+|. |||+|+.|+ +|+.+|+.||.|++.|+++|++||+||++||+-
T Consensus 193 ~ll~~~~~gll~l~sD~~L~~d~---~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 193 ELLSGEKEGLLQLVSDKALLDDP---VFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHhcCCcCCCccccchHHHccCc---hHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999 89865 999999999 999999999999999999999999999999973
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.7e-63 Score=478.86 Aligned_cols=236 Identities=25% Similarity=0.366 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHHcCCC---chhhHHHHHhhcccc------------cCCCCccccCCCCCcccccccccccccchhHH
Q 043984 46 AFEIVRKEMECAVLSDPR---NAALIVRLHFHDCFV------------QGCDGSVLLDDTIDLQGEKKASINRNALKGFR 110 (338)
Q Consensus 46 ~e~iV~~~v~~~~~~~~~---~aa~llRL~FHDcfv------------~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~ 110 (338)
+|..|+++|++.+..+.. .++.+|||+||||++ +|||||||++.+ .|+++++|.+ ++ +
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~g-L~--~ 88 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIG-LD--E 88 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCC-HH--H
Confidence 588999999999986544 567799999999997 899999999753 5999999985 44 8
Q ss_pred HHHHHHHHhhhcCCCccchHHHHHHHHHhHHHh-hCCCcccccCCcCCCCcchhhcccCCCCCCCCCHHHHHHHHHHCCC
Q 043984 111 IIDRIKNKIESDCPGIVSCADILTIAARDAIIL-VGGPYWDVPVGRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGL 189 (338)
Q Consensus 111 ~I~~iK~~le~~cp~~VScADilalAar~av~~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl 189 (338)
+|+.+|..+|+.| |||||||+||||+||+. .|||.|+|++||+|++++. +++.||.|+.++++|++.|+++||
T Consensus 89 vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~Gf 162 (328)
T cd00692 89 IVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADAGF 162 (328)
T ss_pred HHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCC
Confidence 9999999999998 99999999999999996 5999999999999999886 456899999999999999999999
Q ss_pred ChhhhhhcccccccccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCccChHHHHHhh
Q 043984 190 SVTDMVALSGAHTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILL 269 (338)
Q Consensus 190 ~~~elVaLsGaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~ 269 (338)
+++|||+|+||||||++|. .||+++ ..++| .||.+|||+||+|++
T Consensus 163 ~~~E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~ll 207 (328)
T cd00692 163 SPDELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPFD-STPGVFDTQFFIETL 207 (328)
T ss_pred CHHHHhhhcccccccccCC---------------CCCCCC-------------------CCCCC-CCcchhcHHHHHHHH
Confidence 9999999999999999982 366664 14678 699999999999987
Q ss_pred -cCcc-------------------cccchhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCCCCCCCCee
Q 043984 270 -QGEG-------------------VLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNPESFVNGEV 329 (338)
Q Consensus 270 -~~~g-------------------lL~SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~igvltG~~~GeI 329 (338)
.+++ +|+||++|+.|+ +|+.+|++||.||+.|+++|++||+||++|||.. ..
T Consensus 208 ~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~---~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~~-----~~ 279 (328)
T cd00692 208 LKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDP---RTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQDN-----IS 279 (328)
T ss_pred HcCCCCCCccccccccccCccccccccchHHHhcCC---cHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCc-----ch
Confidence 5555 499999999999 9999999999999999999999999999999852 37
Q ss_pred cccccCCC
Q 043984 330 RKNCRFVN 337 (338)
Q Consensus 330 R~~C~~vn 337 (338)
+.+|+.|+
T Consensus 280 l~dcs~v~ 287 (328)
T cd00692 280 LTDCSDVI 287 (328)
T ss_pred hccCcccC
Confidence 78999886
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2.1e-63 Score=463.36 Aligned_cols=220 Identities=28% Similarity=0.449 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHhhcccc-------cCCCCccccCCCCCcccccccccccccchhHHHHHHHHHHhh
Q 043984 48 EIVRKEMECAVLSDPRNAALIVRLHFHDCFV-------QGCDGSVLLDDTIDLQGEKKASINRNALKGFRIIDRIKNKIE 120 (338)
Q Consensus 48 ~iV~~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~le 120 (338)
+-++..+.+.+ ++...+|.+|||+||||.+ +||||||.+ ..|+++++|.|+..++++|++||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf------~~E~~~~~N~gL~~~~~~i~~iK~~~- 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRH------PQELAHDANNGLDIAVRLLDPIKELF- 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecC------hhhccCCCcCChHHHHHHHHHHHHHc-
Confidence 34577777766 4678999999999999975 899999986 35999999997766999999999998
Q ss_pred hcCCCccchHHHHHHHHHhHHHhhCCCcccccCCcCCCCcchhhcccCCCCCCCCCHHHHHHHHHHCCCChhhhhhcccc
Q 043984 121 SDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSGA 200 (338)
Q Consensus 121 ~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaLsGa 200 (338)
++|||||||+||||+||+.+|||.|+|++||+|+.++. ++++||.|+.++++|++.|+++||+++|||||+||
T Consensus 90 ----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGa 162 (251)
T PLN02879 90 ----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGG 162 (251)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecc
Confidence 58999999999999999999999999999999999875 45789999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCccChHHHHHhhcC--ccc--cc
Q 043984 201 HTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQG--EGV--LN 276 (338)
Q Consensus 201 HTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl--L~ 276 (338)
||||++||. | ++|.|. +| .||.+|||+||++|+.+ +|+ |+
T Consensus 163 HTiG~ah~~----r-~g~~g~------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll~L~ 206 (251)
T PLN02879 163 HTLGRCHKE----R-SGFEGA------------------------------WT-PNPLIFDNSYFKEILSGEKEGLLQLP 206 (251)
T ss_pred ccccccccc----c-ccCCCC------------------------------CC-CCccceeHHHHHHHHcCCcCCCccch
Confidence 999999995 4 444321 23 59999999999999999 898 68
Q ss_pred chhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCC
Q 043984 277 SDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNITNP 321 (338)
Q Consensus 277 SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~igvl 321 (338)
||++|+.|+ +|+++|++||.||+.|+++|++||+||++||+.
T Consensus 207 SD~aL~~D~---~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 207 TDKALLDDP---LFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred hhHHHhcCC---cHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999999 999999999999999999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.9e-59 Score=439.94 Aligned_cols=224 Identities=31% Similarity=0.441 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHhhccccc--------CCCCccccCCCCCcccccccccccccchhHHHHHHHHHHhh
Q 043984 49 IVRKEMECAVLSDPRNAALIVRLHFHDCFVQ--------GCDGSVLLDDTIDLQGEKKASINRNALKGFRIIDRIKNKIE 120 (338)
Q Consensus 49 iV~~~v~~~~~~~~~~aa~llRL~FHDcfv~--------GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~le 120 (338)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++. |+++++|.++.+++++|++||.++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~------e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP------ELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc------cccCcccccHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999996 9999999963 9999999987899999999999999
Q ss_pred hcCCCccchHHHHHHHHHhHHHhh--CCCcccccCCcCCCCcch--hhcccCCCCCCCCCHHHHHHHHHHCCCChhhhhh
Q 043984 121 SDCPGIVSCADILTIAARDAIILV--GGPYWDVPVGRKDSKTAS--YALADSNLPSPDEGLLSIISKFHYQGLSVTDMVA 196 (338)
Q Consensus 121 ~~cp~~VScADilalAar~av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVa 196 (338)
. |++|||||||++|+++||+.+ |||.|+|++||+|+..+. ...+...+|.|..+++++++.|+++||+++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 899999999999999999999 999999999999999774 3446677888889999999999999999999999
Q ss_pred cc-ccccc-ccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCccChHHHHHhhcCc--
Q 043984 197 LS-GAHTI-GMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGE-- 272 (338)
Q Consensus 197 Ls-GaHTi-G~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~-- 272 (338)
|+ ||||| |++||..|..|+ |+ +|+.||.+|||+||++++.++
T Consensus 154 L~~GaHti~G~~~~~~~~~~~------------------------~~----------~~~~tp~~fDN~yy~~l~~~~~~ 199 (255)
T cd00314 154 LSAGAHTLGGKNHGDLLNYEG------------------------SG----------LWTSTPFTFDNAYFKNLLDMNWE 199 (255)
T ss_pred hccCCeeccCcccCCCCCccc------------------------CC----------CCCCCCCccchHHHHHHhcCCcc
Confidence 99 99999 999999877664 21 244799999999999999998
Q ss_pred --------------ccccchhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHhhc
Q 043984 273 --------------GVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGN 317 (338)
Q Consensus 273 --------------glL~SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~ 317 (338)
++|+||++|+.|+ +|+.+|++||.|++.|+++|++||+||++
T Consensus 200 ~~~~~~~~~~~~~~~~l~sD~~L~~d~---~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 200 WRVGSPDPDGVKGPGLLPSDYALLSDS---ETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred cccCCccCCCcccCCCchhhHHHhcCH---hHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 8999999999999 99999999999999999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=6.6e-57 Score=439.80 Aligned_cols=268 Identities=18% Similarity=0.233 Sum_probs=232.4
Q ss_pred hhcCCccHH-HHHHHHHHHHHHcC--------CCchhhHHHHHhhcccc-------cCCC-CccccCCCCCccccccccc
Q 043984 39 YAKTCPTAF-EIVRKEMECAVLSD--------PRNAALIVRLHFHDCFV-------QGCD-GSVLLDDTIDLQGEKKASI 101 (338)
Q Consensus 39 Y~~sCP~~e-~iV~~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSill~~~~~~~~E~~~~~ 101 (338)
|.+.+-++. +.|+++|++.+..+ ..++|.+|||+|||+.+ +|++ |+|.+ .+|++++.
T Consensus 35 ~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf------~pe~~~~~ 108 (409)
T cd00649 35 YAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRF------APLNSWPD 108 (409)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCcccc------ccccCcHh
Confidence 344443332 68899999999864 47999999999999997 7886 68766 56999999
Q ss_pred ccccchhHHHHHHHHHHhhhcCCCccchHHHHHHHHHhHHHhhCCCcccccCCcCCCCcchhh-----------------
Q 043984 102 NRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYA----------------- 164 (338)
Q Consensus 102 N~~~~~g~~~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~----------------- 164 (338)
|.++.+++.++++||+++ |..||+||+|+||+..|||.+|||.|+|.+||.|...+...
T Consensus 109 N~gL~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~ 184 (409)
T cd00649 109 NVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSG 184 (409)
T ss_pred hhhHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhccccccccc
Confidence 999889999999999998 34799999999999999999999999999999999754320
Q ss_pred ------------------cccC--CCCCCCCCHHHHHHHHHHCCCChhhhhhc-ccccccccccccccccccccCCCCCC
Q 043984 165 ------------------LADS--NLPSPDEGLLSIISKFHYQGLSVTDMVAL-SGAHTIGMARCVNYRKRIYGDYRVTS 223 (338)
Q Consensus 165 ------------------~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~elVaL-sGaHTiG~~hc~~f~~Rl~~~~g~~~ 223 (338)
.+++ .||+|..++.+|++.|++|||+++||||| +||||||++||.+|.+||.
T Consensus 185 ~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg------- 257 (409)
T cd00649 185 DRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG------- 257 (409)
T ss_pred chhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------
Confidence 1223 79999999999999999999999999999 5999999999999999983
Q ss_pred CCCCCCHHHHHHhh--hcCCCCCC-CCCCcCCC---CCCCCccChHHHHHhhc---------------------------
Q 043984 224 GINPLSETHLSVLK--SICPPIGS-DNNETAMD---YETPNLFDNSFYQILLQ--------------------------- 270 (338)
Q Consensus 224 ~dp~~d~~~~~~L~--~~Cp~~~~-~~~~~~lD---~~Tp~~FDN~Yy~~l~~--------------------------- 270 (338)
+||.+++.|++.|+ ..||...+ ++....+| +.||.+|||+||++|+.
T Consensus 258 ~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~ 337 (409)
T cd00649 258 PEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVP 337 (409)
T ss_pred CCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCC
Confidence 69999999999996 89997533 33455788 57999999999999998
Q ss_pred ---------CcccccchhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHh--hcCCCCCCCCCC
Q 043984 271 ---------GEGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKM--GNITNPESFVNG 327 (338)
Q Consensus 271 ---------~~glL~SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km--~~igvltG~~~G 327 (338)
++|||+||++|+.|+ +|+++|++||.|++.||++|++||+|| +.+|++|- --|
T Consensus 338 d~~~~~~~~~~gmL~SD~aL~~Dp---~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~-~~g 401 (409)
T cd00649 338 DAHDPSKKHAPMMLTTDLALRFDP---EYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSR-YLG 401 (409)
T ss_pred CccccccccCcccchhhHhhhcCc---cHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhh-hcC
Confidence 568999999999999 999999999999999999999999999 68999876 444
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=8.2e-54 Score=441.82 Aligned_cols=263 Identities=19% Similarity=0.227 Sum_probs=226.5
Q ss_pred hhcCCccH-HHHHHHHHHHHHHcC--------CCchhhHHHHHhhcccc-------cCCC-CccccCCCCCccccccccc
Q 043984 39 YAKTCPTA-FEIVRKEMECAVLSD--------PRNAALIVRLHFHDCFV-------QGCD-GSVLLDDTIDLQGEKKASI 101 (338)
Q Consensus 39 Y~~sCP~~-e~iV~~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSill~~~~~~~~E~~~~~ 101 (338)
|.+.+-+. .+.|+++|++.+... ..++|.+|||+||++.+ +||+ |+|.+ .+|++++.
T Consensus 45 y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf------~P~~sw~~ 118 (716)
T TIGR00198 45 YAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRF------APLNSWPD 118 (716)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceec------ccccCchh
Confidence 34444332 257899999999865 47999999999999997 7774 67765 56999999
Q ss_pred ccccchhHHHHHHHHHHhhhcCCCccchHHHHHHHHHhHHHhhCCCcccccCCcCCCCcch-------------------
Q 043984 102 NRNALKGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTAS------------------- 162 (338)
Q Consensus 102 N~~~~~g~~~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~------------------- 162 (338)
|.++.+++.++++||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 119 N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~ 194 (716)
T TIGR00198 119 NVNLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDR 194 (716)
T ss_pred hhhHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhcccccc
Confidence 99888999999999886 6889999999999999999999999999999999994321
Q ss_pred ------------------hhcccCCCCCCCCCHHHHHHHHHHCCCChhhhhhcc-cccccccccccccccccccCCCCCC
Q 043984 163 ------------------YALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALS-GAHTIGMARCVNYRKRIYGDYRVTS 223 (338)
Q Consensus 163 ------------------~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaLs-GaHTiG~~hc~~f~~Rl~~~~g~~~ 223 (338)
+..+ ..+|+|..++.+|++.|++||||++|||||+ ||||||++||.+|.+|| +
T Consensus 195 ~~l~~p~a~~~~Gliyvnpeg~-~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g 266 (716)
T TIGR00198 195 ESLENPLAATEMGLIYVNPEGP-DGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------G 266 (716)
T ss_pred ccccccchhhhccccccCcccc-cCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------C
Confidence 1112 2699999999999999999999999999995 99999999999999998 2
Q ss_pred CCCCCCHHHHHHhhhcCCCCC---CCCCCcCCC---CCCCCccChHHHHHhhcC--------------------------
Q 043984 224 GINPLSETHLSVLKSICPPIG---SDNNETAMD---YETPNLFDNSFYQILLQG-------------------------- 271 (338)
Q Consensus 224 ~dp~~d~~~~~~L~~~Cp~~~---~~~~~~~lD---~~Tp~~FDN~Yy~~l~~~-------------------------- 271 (338)
+||++++.|++.|+..||... .++..+.+| +.||.+|||+||+||+.+
T Consensus 267 ~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~ 346 (716)
T TIGR00198 267 PDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDV 346 (716)
T ss_pred CCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccc
Confidence 799999999999999998532 223356777 579999999999999975
Q ss_pred --------cccccchhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHhh--cCCCCC
Q 043984 272 --------EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMG--NITNPE 322 (338)
Q Consensus 272 --------~glL~SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~--~igvlt 322 (338)
.++|+||++|+.|+ +++++|+.||.|++.|+++|++||+||+ .+|++.
T Consensus 347 ~~~~~~~~~~mL~SDlaL~~Dp---~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 347 EDPNKKHNPIMLDADLALRFDP---EFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred cccccccccCccchhHHhccCc---cHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 68999999999999 9999999999999999999999999999 456544
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.6e-50 Score=415.27 Aligned_cols=255 Identities=18% Similarity=0.239 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHcC--------CCchhhHHHHHhhcccc-------cCCC-CccccCCCCCcccccccccccccchhHHH
Q 043984 48 EIVRKEMECAVLSD--------PRNAALIVRLHFHDCFV-------QGCD-GSVLLDDTIDLQGEKKASINRNALKGFRI 111 (338)
Q Consensus 48 ~iV~~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSill~~~~~~~~E~~~~~N~~~~~g~~~ 111 (338)
+.|+++|++.+... ..++|.+|||+||++.+ +||+ |+|.+ .+|.+++.|.++.+++.+
T Consensus 57 ~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf------~pe~~w~~N~gL~ka~~~ 130 (726)
T PRK15061 57 EALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------APLNSWPDNVNLDKARRL 130 (726)
T ss_pred HHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC------cccccchhhhhHHHHHHH
Confidence 57999999999865 47999999999999997 7885 67765 569999999998899999
Q ss_pred HHHHHHHhhhcCCCccchHHHHHHHHHhHHHhhCCCcccccCCcCCCCcchh----------------------------
Q 043984 112 IDRIKNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASY---------------------------- 163 (338)
Q Consensus 112 I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~---------------------------- 163 (338)
+++||+++ |..||+||+|+||+..|||.+|||.|+|.+||.|...+..
T Consensus 131 L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~ 206 (726)
T PRK15061 131 LWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLA 206 (726)
T ss_pred HHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchh
Confidence 99999998 4579999999999999999999999999999999865432
Q ss_pred -----------hcccCCCCCCCCCHHHHHHHHHHCCCChhhhhhcc-cccccccccccccccccccCCCCCCCCCCCCHH
Q 043984 164 -----------ALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALS-GAHTIGMARCVNYRKRIYGDYRVTSGINPLSET 231 (338)
Q Consensus 164 -----------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaLs-GaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~ 231 (338)
+.+ ..+|+|..++.+|++.|.+|||+++|||||+ ||||||++||..|.+|| ++||.+++.
T Consensus 207 a~~mgliyvnpegp-~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl-------gpdP~~a~~ 278 (726)
T PRK15061 207 AVQMGLIYVNPEGP-NGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV-------GPEPEAAPI 278 (726)
T ss_pred hhhccceecCCCCC-CCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-------CCCCCcCHH
Confidence 111 2389999999999999999999999999995 99999999999999997 279999999
Q ss_pred HHHHhh--hcCCCCC-CCCCCcCCC---CCCCCccChHHHHHhhcC----------------------------------
Q 043984 232 HLSVLK--SICPPIG-SDNNETAMD---YETPNLFDNSFYQILLQG---------------------------------- 271 (338)
Q Consensus 232 ~~~~L~--~~Cp~~~-~~~~~~~lD---~~Tp~~FDN~Yy~~l~~~---------------------------------- 271 (338)
+++.|. ..||... .++....+| +.||.+|||+||++|+.+
T Consensus 279 ~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~ 358 (726)
T PRK15061 279 EEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKK 358 (726)
T ss_pred HHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccc
Confidence 999985 8999743 333455677 579999999999999985
Q ss_pred --cccccchhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHhhc--CCCCCC
Q 043984 272 --EGVLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGN--ITNPES 323 (338)
Q Consensus 272 --~glL~SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~--igvltG 323 (338)
.+||+||++|+.|+ .++++|++||.|+++|+++|++||+||.+ +|+++-
T Consensus 359 ~~~~MLtSD~AL~~DP---~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 359 HAPTMLTTDLALRFDP---EYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred cCcccccccHHhhcCC---cHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhh
Confidence 58999999999999 99999999999999999999999999955 666543
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=6.2e-50 Score=372.71 Aligned_cols=218 Identities=26% Similarity=0.335 Sum_probs=177.2
Q ss_pred HHHHHHHHHcCCCchhhHHHHHhhccc-------ccCCCCccccCCCCCcccccc-cccccccchhHHHHHHHHHHhhhc
Q 043984 51 RKEMECAVLSDPRNAALIVRLHFHDCF-------VQGCDGSVLLDDTIDLQGEKK-ASINRNALKGFRIIDRIKNKIESD 122 (338)
Q Consensus 51 ~~~v~~~~~~~~~~aa~llRL~FHDcf-------v~GcDgSill~~~~~~~~E~~-~~~N~~~~~g~~~I~~iK~~le~~ 122 (338)
...-..+...++++++++|||+||||| ++||||||+++.. .+|+. .+.|. .+++|+.|+.+
T Consensus 28 ~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~-~l~~~~~i~~~------- 96 (264)
T cd08201 28 TPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNT-TLNFFVNFYSP------- 96 (264)
T ss_pred ccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhh-ccccceeeccC-------
Confidence 333344455789999999999999999 8999999999632 45766 44444 56788776542
Q ss_pred CCCccchHHHHHHHHHhHHHhhCCCcccccCCcCCCCcchhhcccCCCCCCCCCHHHHHHHHHHCCCChhhhhhccc-cc
Q 043984 123 CPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASYALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALSG-AH 201 (338)
Q Consensus 123 cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaLsG-aH 201 (338)
+||||||||||||+||+.+|||.|+|++||+|+.++.+. .||.|+.++++|++.|+++||+++|||+|+| ||
T Consensus 97 ---~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaH 169 (264)
T cd08201 97 ---RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGH 169 (264)
T ss_pred ---ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCe
Confidence 699999999999999999999999999999999988642 4999999999999999999999999999995 99
Q ss_pred ccccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCccChHHHHHhhcCcc--------
Q 043984 202 TIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLFDNSFYQILLQGEG-------- 273 (338)
Q Consensus 202 TiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g-------- 273 (338)
|||++||..|.++.- |. ...+...++| .||.+|||+||.+++.+..
T Consensus 170 TiG~ahc~~f~~~~~---------~g----------------~~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~ 223 (264)
T cd08201 170 TLGGVHSEDFPEIVP---------PG----------------SVPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGP 223 (264)
T ss_pred eeeecccccchhhcC---------Cc----------------cccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecC
Confidence 999999998876632 10 0001234677 7999999999999998752
Q ss_pred --cccchhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHhhc
Q 043984 274 --VLNSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGN 317 (338)
Q Consensus 274 --lL~SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~ 317 (338)
.+.||..+|+..+|+..+.+ | +++.|.+..+..|.||.+
T Consensus 224 ~~~~~sd~r~f~~d~n~t~~~l----~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 224 NNTTNSDLRIFSSDGNVTMNEL----A-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCCccchhhheecCccHHHHHh----c-ChHHHHHHHHHHHHHHhC
Confidence 36899999987755555444 5 789999999999999964
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=9.2e-40 Score=307.98 Aligned_cols=221 Identities=19% Similarity=0.270 Sum_probs=181.1
Q ss_pred HHHHHHHHcCCCchhhHHHHHhhcccc-------cCCCCc-cccCCCCCcccccccccccc--cchhHHHHHHHHHHhhh
Q 043984 52 KEMECAVLSDPRNAALIVRLHFHDCFV-------QGCDGS-VLLDDTIDLQGEKKASINRN--ALKGFRIIDRIKNKIES 121 (338)
Q Consensus 52 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~~--~~~g~~~I~~iK~~le~ 121 (338)
+.+++.+.......+.||||+||++.+ +|++|+ |.| .+|++++.|.+ +.+.+.++++||+++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 677788888888999999999999997 899998 655 56999999998 77899999999999853
Q ss_pred c-CC-CccchHHHHHHHHHhHHHhhCC-----CcccccCCcCCCCcchhhcc--cCCCCCCC------------CCHHHH
Q 043984 122 D-CP-GIVSCADILTIAARDAIILVGG-----PYWDVPVGRKDSKTASYALA--DSNLPSPD------------EGLLSI 180 (338)
Q Consensus 122 ~-cp-~~VScADilalAar~av~~~GG-----P~~~v~~GR~D~~~s~~~~~--~~~lP~p~------------~~~~~l 180 (338)
. -+ ..||+||+|+||+..|||.+|| |.|++.+||.|...+..... ...+|.+. ...++|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 2 12 2699999999999999999999 99999999999987632110 11345332 244789
Q ss_pred HHHHHHCCCChhhhhhccccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCc
Q 043984 181 ISKFHYQGLSVTDMVALSGAH-TIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNL 259 (338)
Q Consensus 181 ~~~F~~~Gl~~~elVaLsGaH-TiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~ 259 (338)
++.|.++|||++|||||+||| ++|..|..+ +.|.| ..+|.+
T Consensus 171 rd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G~w-------------------------------T~~p~~ 212 (297)
T cd08200 171 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHGVF-------------------------------TDRPGV 212 (297)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCC-------CCCCC-------------------------------cCCCCc
Confidence 999999999999999999997 699877432 11211 158999
Q ss_pred cChHHHHHhhcC--------------------cc-----cccchhhhhcCCcchhHHHHHHHhhhC--HHHHHHHHHHHH
Q 043984 260 FDNSFYQILLQG--------------------EG-----VLNSDQEMYSSIFGIQTKELVNKYAHD--ALAFFQQFSDSM 312 (338)
Q Consensus 260 FDN~Yy~~l~~~--------------------~g-----lL~SD~~L~~d~~~~~t~~~V~~yA~~--~~~F~~~Fa~Am 312 (338)
|||.||+||++. .| .+.+|..|.+|+ +.|++|+.||.| ++.||+||++||
T Consensus 213 f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~---~~R~~ve~YA~dd~~~~F~~DF~~A~ 289 (297)
T cd08200 213 LTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNS---ELRAVAEVYASDDAQEKFVKDFVAAW 289 (297)
T ss_pred cccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCH---HHHHHHHHHhcccchhHHHHHHHHHH
Confidence 999999999952 01 268899999999 999999999998 999999999999
Q ss_pred HHhhcCC
Q 043984 313 VKMGNIT 319 (338)
Q Consensus 313 ~Km~~ig 319 (338)
.||+++.
T Consensus 290 ~Klmeld 296 (297)
T cd08200 290 TKVMNLD 296 (297)
T ss_pred HHHHhcC
Confidence 9999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=9.9e-35 Score=300.44 Aligned_cols=220 Identities=20% Similarity=0.283 Sum_probs=177.7
Q ss_pred HHHHHHHH---HHHcCCCchhhHHHHHhhcccc-------cCCCCc-cccCCCCCcccccccccc--cccchhHHHHHHH
Q 043984 49 IVRKEMEC---AVLSDPRNAALIVRLHFHDCFV-------QGCDGS-VLLDDTIDLQGEKKASIN--RNALKGFRIIDRI 115 (338)
Q Consensus 49 iV~~~v~~---~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N--~~~~~g~~~I~~i 115 (338)
+|+++|+. .+....-..+.|||++||++.+ +|++|+ |.| .+|++++.| .++.+.+.++++|
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl------~pe~~w~~N~p~gL~~vl~~Le~I 502 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRL------EPQKNWPVNEPTRLAKVLAVLEKI 502 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeec------chhcCcccCCHHHHHHHHHHHHHH
Confidence 34555544 4566777899999999999997 899997 666 569999999 7788999999999
Q ss_pred HHHhhhcCCCccchHHHHHHHHHhHHHhh---CCC--cccccCCcCCCCcchhhcccCCCC-----C----------CCC
Q 043984 116 KNKIESDCPGIVSCADILTIAARDAIILV---GGP--YWDVPVGRKDSKTASYALADSNLP-----S----------PDE 175 (338)
Q Consensus 116 K~~le~~cp~~VScADilalAar~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP-----~----------p~~ 175 (338)
|+++.. ..||+||+|+||+..|||.+ ||| .|++.+||.|...... ++....| + ...
T Consensus 503 k~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~ 578 (716)
T TIGR00198 503 QAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVT 578 (716)
T ss_pred HHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCC
Confidence 999852 27999999999999999999 898 5899999999987642 2222222 1 122
Q ss_pred CHHHHHHHHHHCCCChhhhhhcccc-cccccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCC
Q 043984 176 GLLSIISKFHYQGLSVTDMVALSGA-HTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDY 254 (338)
Q Consensus 176 ~~~~l~~~F~~~Gl~~~elVaLsGa-HTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~ 254 (338)
....|++.|.++|||+.|||||+|| |++|++|..+ +.|. +-
T Consensus 579 ~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~G~------------------------------~T- 620 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------KHGV------------------------------FT- 620 (716)
T ss_pred HHHHHHHHHHhCCCChHHHHheecchhhccccCCCC-------CCCC------------------------------Cc-
Confidence 4567899999999999999999999 5999988532 1121 11
Q ss_pred CCCCccChHHHHHhhcCc--------------------c---c--ccchhhhhcCCcchhHHHHHHHhhhCH--HHHHHH
Q 043984 255 ETPNLFDNSFYQILLQGE--------------------G---V--LNSDQEMYSSIFGIQTKELVNKYAHDA--LAFFQQ 307 (338)
Q Consensus 255 ~Tp~~FDN~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~~~~t~~~V~~yA~~~--~~F~~~ 307 (338)
.+|.+|||.||+||++.. | + ..+|..|.+|+ +.|++|+.||+|+ +.|++|
T Consensus 621 ~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~---~lra~aE~YA~dd~~~~F~~D 697 (716)
T TIGR00198 621 DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNS---ILRAVAEVYAQDDAREKFVKD 697 (716)
T ss_pred CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCH---HHHHHHHHHhcccccchHHHH
Confidence 589999999999998621 2 2 27899999999 9999999999997 899999
Q ss_pred HHHHHHHhhcCC
Q 043984 308 FSDSMVKMGNIT 319 (338)
Q Consensus 308 Fa~Am~Km~~ig 319 (338)
|++||.|+++++
T Consensus 698 F~~Aw~Klm~ld 709 (716)
T TIGR00198 698 FVAAWTKVMNLD 709 (716)
T ss_pred HHHHHHHHHhCC
Confidence 999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3.5e-34 Score=294.93 Aligned_cols=220 Identities=20% Similarity=0.284 Sum_probs=181.3
Q ss_pred HHHHHHHHcCCCchhhHHHHHhhcccc-------cCCCCc-cccCCCCCccccccccccc--ccchhHHHHHHHHHHhhh
Q 043984 52 KEMECAVLSDPRNAALIVRLHFHDCFV-------QGCDGS-VLLDDTIDLQGEKKASINR--NALKGFRIIDRIKNKIES 121 (338)
Q Consensus 52 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~--~~~~g~~~I~~iK~~le~ 121 (338)
..+++.+....-..+.|||++||++.+ +|++|+ |.| .+|++++.|. ++.+.+.++++||++++.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl------~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRL------APQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceec------ccccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 667777888888999999999999997 899997 766 4699999999 777899999999999964
Q ss_pred cC--CCccchHHHHHHHHHhHHHhh---CC--CcccccCCcCCCCcchhhccc---CCCCCCC------------CCHHH
Q 043984 122 DC--PGIVSCADILTIAARDAIILV---GG--PYWDVPVGRKDSKTASYALAD---SNLPSPD------------EGLLS 179 (338)
Q Consensus 122 ~c--p~~VScADilalAar~av~~~---GG--P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~~ 179 (338)
.- ...||+||+|+||+..|||.+ || |.|++.+||.|...... +++ ..+|.+. .....
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~ 594 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEEL 594 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHH
Confidence 32 136999999999999999999 68 99999999999987532 222 2456532 23478
Q ss_pred HHHHHHHCCCChhhhhhccccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCC
Q 043984 180 IISKFHYQGLSVTDMVALSGAH-TIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPN 258 (338)
Q Consensus 180 l~~~F~~~Gl~~~elVaLsGaH-TiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~ 258 (338)
|++.|.++|||+.|||||+||| ++|..|-.+ +.|. + ..+|.
T Consensus 595 L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S-------~~G~------------------------------~-T~~p~ 636 (726)
T PRK15061 595 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHGV------------------------------F-TDRPG 636 (726)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCC-------CCCC------------------------------C-cCCCC
Confidence 9999999999999999999997 788877322 1111 1 15899
Q ss_pred ccChHHHHHhhcCc--------------------c---c--ccchhhhhcCCcchhHHHHHHHhhhC--HHHHHHHHHHH
Q 043984 259 LFDNSFYQILLQGE--------------------G---V--LNSDQEMYSSIFGIQTKELVNKYAHD--ALAFFQQFSDS 311 (338)
Q Consensus 259 ~FDN~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~~~~t~~~V~~yA~~--~~~F~~~Fa~A 311 (338)
+|||.||+||++.. | + +.+|..|.+|+ +.|++|+.||.| ++.|++||++|
T Consensus 637 ~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds---~lRa~aEvYA~dd~~~kF~~DF~~A 713 (726)
T PRK15061 637 VLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNS---QLRALAEVYASDDAKEKFVRDFVAA 713 (726)
T ss_pred ccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCH---HHHHHHHHHhcccchhHHHHHHHHH
Confidence 99999999999520 1 1 47899999999 999999999998 99999999999
Q ss_pred HHHhhcCC
Q 043984 312 MVKMGNIT 319 (338)
Q Consensus 312 m~Km~~ig 319 (338)
|.|+++++
T Consensus 714 w~Kvmeld 721 (726)
T PRK15061 714 WTKVMNLD 721 (726)
T ss_pred HHHHHhCC
Confidence 99999986
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.4e-31 Score=260.37 Aligned_cols=255 Identities=18% Similarity=0.223 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHcC--------CCchhhHHHHHhhcccc----cCCCCccccCCCCCcccccccccccccchhHHHHHHH
Q 043984 48 EIVRKEMECAVLSD--------PRNAALIVRLHFHDCFV----QGCDGSVLLDDTIDLQGEKKASINRNALKGFRIIDRI 115 (338)
Q Consensus 48 ~iV~~~v~~~~~~~--------~~~aa~llRL~FHDcfv----~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I~~i 115 (338)
..|+..+...+..+ ...+|.+|||+||-+.+ .|--|+- .+..+|.++.++|.|.++.+++.++.+|
T Consensus 70 ~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~--~G~qRFaPlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 70 AAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAG--GGQQRFAPLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred HHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCC--CCceecccccCCCcccchHHHHHHhhhH
Confidence 35777777777665 36899999999999987 1111111 2345677899999999999999999999
Q ss_pred HHHhhhcCCCccchHHHHHHHHHhHHHhhCCCcccccCCcCCCCcchh--------------------------------
Q 043984 116 KNKIESDCPGIVSCADILTIAARDAIILVGGPYWDVPVGRKDSKTASY-------------------------------- 163 (338)
Q Consensus 116 K~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~-------------------------------- 163 (338)
|.++ +..||+||+++||+..|++.+|++++.+..||.|--.+..
T Consensus 148 KkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMG 223 (730)
T COG0376 148 KKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMG 223 (730)
T ss_pred hHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheee
Confidence 9998 4699999999999999999999999999999999876654
Q ss_pred ------hcccCCCCCCCCCHHHHHHHHHHCCCChhhhhhcc-cccccccccccccccccccCCCCCCCCCCCCHHHHHHh
Q 043984 164 ------ALADSNLPSPDEGLLSIISKFHYQGLSVTDMVALS-GAHTIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVL 236 (338)
Q Consensus 164 ------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaLs-GaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L 236 (338)
+++ ...|+|-.+..+++..|++|+|+++|.|||+ ||||+|++|...-..-+ +++|.-.+--.+.|
T Consensus 224 LIYVNPEGp-ng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~qGl 295 (730)
T COG0376 224 LIYVNPEGP-NGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQQGL 295 (730)
T ss_pred eEEeCCCCC-CCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhhhcc
Confidence 223 4689999999999999999999999999997 69999999976422221 36776555555555
Q ss_pred hh--cCCCCCCC-CCCcCCC---CCCCCccChHHHHHhhcCc-----------------------------------ccc
Q 043984 237 KS--ICPPIGSD-NNETAMD---YETPNLFDNSFYQILLQGE-----------------------------------GVL 275 (338)
Q Consensus 237 ~~--~Cp~~~~~-~~~~~lD---~~Tp~~FDN~Yy~~l~~~~-----------------------------------glL 275 (338)
-. .|-.+.+. +.+..+. ..||++|||+||.+|.... .||
T Consensus 296 GW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~Ml 375 (730)
T COG0376 296 GWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMML 375 (730)
T ss_pred ccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceee
Confidence 43 44332222 2122221 3689999999999998541 489
Q ss_pred cchhhhhcCCcchhHHHHHHHhhhCHHHHHHHHHHHHHHhhcCC
Q 043984 276 NSDQEMYSSIFGIQTKELVNKYAHDALAFFQQFSDSMVKMGNIT 319 (338)
Q Consensus 276 ~SD~~L~~d~~~~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~ig 319 (338)
.+|.+|.-|| ..+++.++|..|++.|.+.|++||.||.+-+
T Consensus 376 ttDlaLr~DP---~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 376 TTDLALRFDP---EYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred ccchhhhcCh---HHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999 9999999999999999999999999998754
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.45 E-value=5.5e-13 Score=133.29 Aligned_cols=216 Identities=20% Similarity=0.284 Sum_probs=157.8
Q ss_pred HHHHHHHHcCCCchhhHHHHHhhcccc-------cCCCC-ccccCCCCCcccccccccccc--cchhHHHHHHHHHHhhh
Q 043984 52 KEMECAVLSDPRNAALIVRLHFHDCFV-------QGCDG-SVLLDDTIDLQGEKKASINRN--ALKGFRIIDRIKNKIES 121 (338)
Q Consensus 52 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDg-Sill~~~~~~~~E~~~~~N~~--~~~g~~~I~~iK~~le~ 121 (338)
..++..+....-....|+-.+|-.+.+ +|.+| .|.| .+.++++.|.. +.+.+.+++.|.+.+.
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirL------aPqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRL------APQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEee------cccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 567777888888899999999998876 66666 5656 35888998864 3468889999988886
Q ss_pred cCCCccchHHHHHHHHHhHHHhh---CCCc--ccccCCcCCCCcchhhcccC---CCCC------------CCCCHHHHH
Q 043984 122 DCPGIVSCADILTIAARDAIILV---GGPY--WDVPVGRKDSKTASYALADS---NLPS------------PDEGLLSII 181 (338)
Q Consensus 122 ~cp~~VScADilalAar~av~~~---GGP~--~~v~~GR~D~~~s~~~~~~~---~lP~------------p~~~~~~l~ 181 (338)
..||.||+|+|++..+||.+ +|-. +|+..||.|+...... +.. .-|- ....-.-|+
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 37999999999999999986 6664 5778999999765422 110 0111 111234567
Q ss_pred HHHHHCCCChhhhhhccccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCCCCCCCcCCCCCCCCcc
Q 043984 182 SKFHYQGLSVTDMVALSGAH-TIGMARCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIGSDNNETAMDYETPNLF 260 (338)
Q Consensus 182 ~~F~~~Gl~~~elVaLsGaH-TiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~F 260 (338)
+.-+-.+||..||++|+||- -+|. |+.|+ ...+.-| .|..+
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~-----------n~g~s-------------------------~~GVfT~--~pg~L 642 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGA-----------NYGGS-------------------------KHGVFTD--RPGVL 642 (730)
T ss_pred HHHHHhccCCccceEEEcceEeecc-----------CCCCC-------------------------ccceecc--Ccccc
Confidence 88888999999999999874 2222 22221 1223333 67888
Q ss_pred ChHHHHHhhcC----------c----------cc-----ccchhhhhcCCcchhHHHHHHHhhhC--HHHHHHHHHHHHH
Q 043984 261 DNSFYQILLQG----------E----------GV-----LNSDQEMYSSIFGIQTKELVNKYAHD--ALAFFQQFSDSMV 313 (338)
Q Consensus 261 DN~Yy~~l~~~----------~----------gl-----L~SD~~L~~d~~~~~t~~~V~~yA~~--~~~F~~~Fa~Am~ 313 (338)
.|.||.||++- + |- -..|..+-+++ ..|.+.+.||.+ ++.|.+||++||.
T Consensus 643 tndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns---~LRA~aEVYa~dda~ekFv~DFvaaw~ 719 (730)
T COG0376 643 TNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNS---ELRALAEVYASDDAKEKFVKDFVAAWT 719 (730)
T ss_pred cchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcH---HHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 88888888853 1 21 24677777788 999999999974 8899999999999
Q ss_pred HhhcCC
Q 043984 314 KMGNIT 319 (338)
Q Consensus 314 Km~~ig 319 (338)
|..++.
T Consensus 720 kVMn~D 725 (730)
T COG0376 720 KVMNLD 725 (730)
T ss_pred HHhccc
Confidence 998875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=68.74 E-value=42 Score=33.21 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=66.3
Q ss_pred hhCCCcccccCCcCCCCcchhhcccCCCCC---CCCCHHHHHHHHHHCCCCh----------hhhhhccccccccccccc
Q 043984 143 LVGGPYWDVPVGRKDSKTASYALADSNLPS---PDEGLLSIISKFHYQGLSV----------TDMVALSGAHTIGMARCV 209 (338)
Q Consensus 143 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~---p~~~~~~l~~~F~~~Gl~~----------~elVaLsGaHTiG~~hc~ 209 (338)
.+|-.+|..+.||.+-..-.........+. +-..+.++...|++.|+.. +|+..|.|+|.+
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l------ 252 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL------ 252 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE------
Confidence 347788999999985432111111111111 1235677888898888854 444555555432
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHHhhhcC-CCCC---CCCCCcCCCCCCCCccChHHHHHhhcCcccccchhhhhcCC
Q 043984 210 NYRKRIYGDYRVTSGINPLSETHLSVLKSIC-PPIG---SDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSI 285 (338)
Q Consensus 210 ~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~C-p~~~---~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~ 285 (338)
+++|...+.|...= ..-. +... ..-....+..+|-..|+...+..++ .. .
T Consensus 253 -----------------Ti~p~ll~~L~~~~~~~~~~~l~~~~-~~~~~~~~~~~~e~~fr~~~~~d~m-------a~-e 306 (333)
T PTZ00411 253 -----------------TISPKLLEELANTEDGPVERKLDPEK-LTEDTEKLPELTEKEFRWELNEDAM-------AT-E 306 (333)
T ss_pred -----------------eCCHHHHHHHHhCCCcccCcccCccc-ccccccccCCCCHHHHHHHhCCCcc-------hH-H
Confidence 45666666665421 1100 0000 1111112356788888764433221 11 1
Q ss_pred cchhHHHHHHHhhhCHHHHHHHHH
Q 043984 286 FGIQTKELVNKYAHDALAFFQQFS 309 (338)
Q Consensus 286 ~~~~t~~~V~~yA~~~~~F~~~Fa 309 (338)
...+-++.|+.|+....+-..
T Consensus 307 ---kl~~gir~F~~d~~~Le~~i~ 327 (333)
T PTZ00411 307 ---KLAEGIRNFAKDLEKLENVIR 327 (333)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777766554433
No 20
>PRK12346 transaldolase A; Provisional
Probab=58.32 E-value=66 Score=31.59 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHhhhcCCCccchHHHHHHHHHhH--HHhhCCCcccccCCcCCCCcchhhcccCCCCC----CCCCHHHHH
Q 043984 108 GFRIIDRIKNKIESDCPGIVSCADILTIAARDA--IILVGGPYWDVPVGRKDSKTASYALADSNLPS----PDEGLLSII 181 (338)
Q Consensus 108 g~~~I~~iK~~le~~cp~~VScADilalAar~a--v~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~ 181 (338)
|++.+..+++. .|+|-=-+.+....+ ...+|-.+|..+.||.|--..... ....++. +-..+.++.
T Consensus 138 Gi~A~~~L~~~-------GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~-~~~~~~~~~~~Gv~~v~~i~ 209 (316)
T PRK12346 138 GIRAAEELEKE-------GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARK-PMDPYVVEEDPGVKSVRNIY 209 (316)
T ss_pred HHHHHHHHHHC-------CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhcc-ccccccccCCChHHHHHHHH
Confidence 55555544332 344433333433333 334588899999999986322110 0011211 123577788
Q ss_pred HHHHHCCCCh
Q 043984 182 SKFHYQGLSV 191 (338)
Q Consensus 182 ~~F~~~Gl~~ 191 (338)
..|++.|+..
T Consensus 210 ~~~k~~~~~T 219 (316)
T PRK12346 210 DYYKQHRYET 219 (316)
T ss_pred HHHHHcCCCc
Confidence 8898888754
No 21
>PRK05269 transaldolase B; Provisional
Probab=54.43 E-value=86 Score=30.77 Aligned_cols=138 Identities=14% Similarity=0.027 Sum_probs=67.1
Q ss_pred HhhCCCcccccCCcCCCCcchhhcccCC---CCCCCCCHHHHHHHHHHCCCChhhhhhccccccccccccccccccc--c
Q 043984 142 ILVGGPYWDVPVGRKDSKTASYALADSN---LPSPDEGLLSIISKFHYQGLSVTDMVALSGAHTIGMARCVNYRKRI--Y 216 (338)
Q Consensus 142 ~~~GGP~~~v~~GR~D~~~s~~~~~~~~---lP~p~~~~~~l~~~F~~~Gl~~~elVaLsGaHTiG~~hc~~f~~Rl--~ 216 (338)
..+|-..+..+.||.|-..-...+.... --++-..+.++...|++.|+..+-| || +|++.. .
T Consensus 168 a~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im----~A---------Sfrn~~~v~ 234 (318)
T PRK05269 168 AEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVM----GA---------SFRNTGQIL 234 (318)
T ss_pred HHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEE----ee---------ccCCHHHHH
Confidence 3457788999999997532111000000 0112345788888999999976533 32 122110 0
Q ss_pred cCCCCCCCC-CCCCHHHHHHhhhc-CCCCC-CCCCCcCCCCCCCCccChHHHHHhhcCcccccchhhhhcCCcchhHHHH
Q 043984 217 GDYRVTSGI-NPLSETHLSVLKSI-CPPIG-SDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYSSIFGIQTKEL 293 (338)
Q Consensus 217 ~~~g~~~~d-p~~d~~~~~~L~~~-Cp~~~-~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~~~~t~~~ 293 (338)
...| .| =+++|...+.|... .|... -...... ...+..+|-..|+..++..+ +.. . ...+=
T Consensus 235 ~laG---~d~vTi~p~ll~~l~~~~~~~~~~l~~~~~~--~~~~~~~~e~~f~~~~~~d~-------ma~-e---kl~eg 298 (318)
T PRK05269 235 ELAG---CDRLTISPALLEELAASEGELERKLSPPGEA--KARPVPLTEAEFRWQHNEDA-------MAT-E---KLAEG 298 (318)
T ss_pred HHhC---CCeEECCHHHHHHHHhcCCCccccCCCcccc--ccccccCCHHHHHHHhCccc-------chH-H---HHHHH
Confidence 1111 12 26778888888742 22110 0000000 01245667777776443332 111 1 34445
Q ss_pred HHHhhhCHHHHHHHH
Q 043984 294 VNKYAHDALAFFQQF 308 (338)
Q Consensus 294 V~~yA~~~~~F~~~F 308 (338)
++.|+.++....+-+
T Consensus 299 i~~F~~~~~~L~~~i 313 (318)
T PRK05269 299 IRKFAKDQEKLEKLI 313 (318)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777766554433
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=51.91 E-value=95 Score=30.51 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=67.1
Q ss_pred HHHhhCCCcccccCCcCCCCcchhhcccC---CCCCCCCCHHHHHHHHHHCCCChh----------hhhhcccccccccc
Q 043984 140 AIILVGGPYWDVPVGRKDSKTASYALADS---NLPSPDEGLLSIISKFHYQGLSVT----------DMVALSGAHTIGMA 206 (338)
Q Consensus 140 av~~~GGP~~~v~~GR~D~~~s~~~~~~~---~lP~p~~~~~~l~~~F~~~Gl~~~----------elVaLsGaHTiG~~ 206 (338)
+...+|-..|..+.||.|--.-....... ..-++-..+.++...|++.|+..+ |+.+|.|+|.
T Consensus 164 aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~---- 239 (317)
T TIGR00874 164 ACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDR---- 239 (317)
T ss_pred HHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCe----
Confidence 33445888999999998652111000000 011123467788889999998653 2233333321
Q ss_pred cccccccccccCCCCCCCCCCCCHHHHHHhhhcCCCCC---CCCCCcCCCCCCCCccChHHHHHhhcCcccccchhhhhc
Q 043984 207 RCVNYRKRIYGDYRVTSGINPLSETHLSVLKSICPPIG---SDNNETAMDYETPNLFDNSFYQILLQGEGVLNSDQEMYS 283 (338)
Q Consensus 207 hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~---~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~ 283 (338)
=+++|...++|...-..-. ........+ ..|..+|...|+...+..+| ..
T Consensus 240 -------------------~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~~~~~d~m-------a~ 292 (317)
T TIGR00874 240 -------------------LTISPALLDELKESTGPVERKLDPESAKKVD-KQPIILDESEFRFLHNEDAM-------AT 292 (317)
T ss_pred -------------------EeCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCCCHHHHHHHhCCCcc-------hH
Confidence 2567777777765221100 000001111 23456788888755443321 22
Q ss_pred CCcchhHHHHHHHhhhCHHHHHH
Q 043984 284 SIFGIQTKELVNKYAHDALAFFQ 306 (338)
Q Consensus 284 d~~~~~t~~~V~~yA~~~~~F~~ 306 (338)
+ ...+-++.|+.|+....+
T Consensus 293 e----kl~~gir~F~~d~~~Le~ 311 (317)
T TIGR00874 293 E----KLAEGIRKFAADQEKLEK 311 (317)
T ss_pred H----HHHHHHHHHHHHHHHHHH
Confidence 1 345556777777765544
No 23
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=49.51 E-value=15 Score=28.84 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhcCCC
Q 043984 304 FFQQFSDSMVKMGNITN 320 (338)
Q Consensus 304 F~~~Fa~Am~Km~~igv 320 (338)
...+|..||.||+.||-
T Consensus 3 m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 3 MQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHCTTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 56799999999999885
No 24
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=45.13 E-value=82 Score=30.86 Aligned_cols=48 Identities=13% Similarity=0.008 Sum_probs=28.7
Q ss_pred hCCCcccccCCcCCCCcchhhcccCCCCC----CCCCHHHHHHHHHHCCCChh
Q 043984 144 VGGPYWDVPVGRKDSKTASYALADSNLPS----PDEGLLSIISKFHYQGLSVT 192 (338)
Q Consensus 144 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~ 192 (338)
+|-..+..+.||.|-..-..... ...+. +-..+.++...|++.|+..+
T Consensus 168 AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~ 219 (313)
T cd00957 168 AGVTLISPFVGRILDWYKKHSGD-KAYTAEEDPGVASVKKIYNYYKKFGYKTK 219 (313)
T ss_pred cCCCEEEeecchHHHhhhhcccc-ccCCccCCcHHHHHHHHHHHHHHcCCCcE
Confidence 47778999999997532111000 01111 22357788889999998754
No 25
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=40.85 E-value=2.7e+02 Score=28.14 Aligned_cols=48 Identities=15% Similarity=0.109 Sum_probs=29.1
Q ss_pred hhCCCcccccCCcCCCCcchhhcccCCCCCCC----CCHHHHHHHHHHCCCCh
Q 043984 143 LVGGPYWDVPVGRKDSKTASYALADSNLPSPD----EGLLSIISKFHYQGLSV 191 (338)
Q Consensus 143 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~----~~~~~l~~~F~~~Gl~~ 191 (338)
.+|-.+|..+.||.|--.-.... ...+|... ..+.++...|++.|+..
T Consensus 173 eAGa~~ISPfVgRi~dw~~~~~g-~~~~~~~~dpGv~~v~~i~~~~~~~~~~T 224 (391)
T PRK12309 173 EAGVTLISPFVGRILDWYKKETG-RDSYPGAEDPGVQSVTQIYNYYKKFGYKT 224 (391)
T ss_pred HcCCCEEEeecchhhhhhhhccC-CCccccccchHHHHHHHHHHHHHhcCCCc
Confidence 35888999999998762211110 01133322 24777888898988754
No 26
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.19 E-value=1e+02 Score=23.55 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHhhccc
Q 043984 49 IVRKEMECAVLSDPRNAALIVRLHFHDCF 77 (338)
Q Consensus 49 iV~~~v~~~~~~~~~~aa~llRL~FHDcf 77 (338)
|.|+.+++.++++|.+-...||+-+---+
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 78999999999999999999999987554
No 27
>PRK01844 hypothetical protein; Provisional
Probab=27.45 E-value=1.3e+02 Score=23.19 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHhhccc
Q 043984 49 IVRKEMECAVLSDPRNAALIVRLHFHDCF 77 (338)
Q Consensus 49 iV~~~v~~~~~~~~~~aa~llRL~FHDcf 77 (338)
+-|+.+++.++++|.+-...||.-|---+
T Consensus 24 ~ark~~~k~lk~NPpine~mir~Mm~QMG 52 (72)
T PRK01844 24 IARKYMMNYLQKNPPINEQMLKMMMMQMG 52 (72)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 56899999999999999999999887553
No 28
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=23.60 E-value=1.4e+02 Score=22.32 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHhhhcCCCccchHHHHHHHHHhHHHhhC
Q 043984 107 KGFRIIDRIKNKIESDCPGIVSCADILTIAARDAIILVG 145 (338)
Q Consensus 107 ~g~~~I~~iK~~le~~cp~~VScADilalAar~av~~~G 145 (338)
+.|+.+++.-..-.-.+...+|.|||..+..-.-+...+
T Consensus 35 ~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~ 73 (95)
T PF00043_consen 35 RYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLG 73 (95)
T ss_dssp HHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhC
Confidence 455555544331111456789999999988877666554
No 29
>KOG4052 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.06 E-value=1.8e+02 Score=26.08 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCchhHHHHHHHHHHhhcccccCCCCCCChhhhhcCCccHHHHHHHHHHHHHHcCC
Q 043984 7 HPRLPILQFLLLVFSSFIPRLHASEPYLTLDYYAKTCPTAFEIVRKEMECAVLSDP 62 (338)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~~e~iV~~~v~~~~~~~~ 62 (338)
-.|||+|++|+++..-+.+..... -+.-+|...| .+=+++.-+++..+....
T Consensus 3 l~rLp~lllL~l~~~lag~~~~~e---E~~vrlpsKC-EvCkllatEleA~l~eTG 54 (190)
T KOG4052|consen 3 LLRLPKLLLLILLYLLAGAAKCNE---ETTVRLPSKC-EVCKLLATELEAKLEETG 54 (190)
T ss_pred cchhhHHHHHHHHHHhccccccCc---cccccccchh-HHHHHHHHHHHHHHhhcC
Confidence 368999998888776654433211 1224888888 345788888888886543
No 30
>PRK00523 hypothetical protein; Provisional
Probab=21.91 E-value=1.9e+02 Score=22.32 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHhhccc
Q 043984 49 IVRKEMECAVLSDPRNAALIVRLHFHDCF 77 (338)
Q Consensus 49 iV~~~v~~~~~~~~~~aa~llRL~FHDcf 77 (338)
+-|+.+++.++++|.+-...||.-|--.+
T Consensus 25 iark~~~k~l~~NPpine~mir~M~~QMG 53 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENMIRAMYMQMG 53 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHHHHHHHHHhC
Confidence 56899999999999999999999887553
No 31
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=21.29 E-value=84 Score=29.67 Aligned_cols=77 Identities=10% Similarity=-0.050 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHhhhcCCCccchHHHHHHHHHhHH--HhhCCCcccccCCcCCCCcchhhcccCCCCCCC--C---CHHH
Q 043984 107 KGFRIIDRIKNKIESDCPGIVSCADILTIAARDAI--ILVGGPYWDVPVGRKDSKTASYALADSNLPSPD--E---GLLS 179 (338)
Q Consensus 107 ~g~~~I~~iK~~le~~cp~~VScADilalAar~av--~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~--~---~~~~ 179 (338)
.|++.+..++++ .|++-=-+.+....++ ..+|-.++.+++||.|...-......+ +++. . .+.+
T Consensus 127 ~Gl~A~~~L~~~-------GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~--~d~~~~~gi~~~~~ 197 (252)
T cd00439 127 EGIPAIKDLIAA-------GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIG--LDLRGKAGVAQVTL 197 (252)
T ss_pred HHHHHHHHHHHC-------CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccc--cccccCcHHHHHHH
Confidence 366666655543 2332222233333332 334777889999999986653222111 2221 2 3446
Q ss_pred HHHHHHHCCCChh
Q 043984 180 IISKFHYQGLSVT 192 (338)
Q Consensus 180 l~~~F~~~Gl~~~ 192 (338)
+...|+..|...+
T Consensus 198 ~~~~~~~~~~~tk 210 (252)
T cd00439 198 AYKLYKQKFKKQR 210 (252)
T ss_pred HHHHHHHhCCCCe
Confidence 6677777777544
No 32
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=20.65 E-value=61 Score=25.38 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=17.9
Q ss_pred HHHHHHHHHCCCChhhhhhccccc
Q 043984 178 LSIISKFHYQGLSVTDMVALSGAH 201 (338)
Q Consensus 178 ~~l~~~F~~~Gl~~~elVaLsGaH 201 (338)
+.|-..|.+.||+..||-.|+-+.
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEAD 34 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHG
T ss_pred CcHHHHHHHcCCCHHHHHHHHhcc
Confidence 678899999999999999998654
Done!