BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043985
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 149/299 (49%), Gaps = 15/299 (5%)
Query: 51 SVPVIDLDGPTAVN-------VNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTL 103
VP IDL + + + + A WGV +INHGIP L+ F+L
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 104 PNEQKLKVA--RSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHF-CQLWPQDYNMH 160
E+K K A ++ +GYG ++ +L W + F ++ P + +WP+ + +
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165
Query: 161 CNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDP 220
EY K ++ LA ++ + S+G E + G ++ + NYYP CP P
Sbjct: 166 IEATSEYAKCLRLLATKVFKAL--SVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP 223
Query: 221 DRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGL 280
+ A+G+ AHTD S T + N V GLQ+ EG WVT V D++V+++GD L ILSNG
Sbjct: 224 ELALGVEAHTDVSALTFILHNMVPGLQLFYEGK-WVTAKCVPDSIVMHIGDTLEILSNGK 282
Query: 281 YPSVLHRAVATR-KNRLSIAYFYGLPSD-LQISPLENLVGPSQPPLYRSISWSEYLRMK 337
Y S+LHR + + K R+S A F P D + + PL +V P + ++++++ K
Sbjct: 283 YKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 341
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 149/299 (49%), Gaps = 15/299 (5%)
Query: 51 SVPVIDLDGPTAVN-------VNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTL 103
VP IDL + + + + A WGV +INHGIP L+ F+L
Sbjct: 45 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 104
Query: 104 PNEQKLKVA--RSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHF-CQLWPQDYNMH 160
E+K K A ++ +GYG ++ +L W + F ++ P + +WP+ + +
Sbjct: 105 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 164
Query: 161 CNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDP 220
EY K ++ LA ++ + S+G E + G ++ + NYYP CP P
Sbjct: 165 IEATSEYAKCLRLLATKVFKAL--SVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP 222
Query: 221 DRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGL 280
+ A+G+ AHTD S T + N V GLQ+ EG WVT V D++V+++GD L ILSNG
Sbjct: 223 ELALGVEAHTDVSALTFILHNMVPGLQLFYEGK-WVTAKCVPDSIVMHIGDTLEILSNGK 281
Query: 281 YPSVLHRAVATR-KNRLSIAYFYGLPSD-LQISPLENLVGPSQPPLYRSISWSEYLRMK 337
Y S+LHR + + K R+S A F P D + + PL +V P + ++++++ K
Sbjct: 282 YKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 145/299 (48%), Gaps = 15/299 (5%)
Query: 51 SVPVIDLDGPTAVN-------VNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTL 103
VP IDL + + + + A WGV +INHGIP L F+L
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSL 105
Query: 104 PNEQKLKVA--RSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHF-CQLWPQDYNMH 160
E+K K A ++ +GYG ++ +L W + F ++ P + +WP+ + +
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165
Query: 161 CNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDP 220
EY K ++ LA ++ + S+G E + G ++ NYYP CP P
Sbjct: 166 IEATSEYAKCLRLLATKVFKAL--SVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQP 223
Query: 221 DRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGL 280
+ A+G+ AHTD S T + N V GLQ+ EG WVT V D++V ++GD L ILSNG
Sbjct: 224 ELALGVEAHTDVSALTFILHNXVPGLQLFYEGK-WVTAKCVPDSIVXHIGDTLEILSNGK 282
Query: 281 YPSVLHRAVATR-KNRLSIAYFYGLPSD-LQISPLENLVGPSQPPLYRSISWSEYLRMK 337
Y S+LHR + + K R+S A F P D + + PL V P + ++++++ K
Sbjct: 283 YKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHK 341
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 147/302 (48%), Gaps = 26/302 (8%)
Query: 50 ESVPVIDLDG----PTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPN 105
E+ P+I LD A I AC+ WG F+++NHGIP + ++ +
Sbjct: 2 ENFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 106 EQKLKVARSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVE 165
EQ+ K + A EG + + + W F P+ + ++ P + V
Sbjct: 62 EQRFKELVASKALEG-----VQAEVTDXDWESTFFLKHLPISNISEV-PDLDEEYREVXR 115
Query: 166 EYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNF----NYYPACPDPD 221
++ K ++KLAE L+ L+ +LG + +K F P NF + YP CP PD
Sbjct: 116 DFAKRLEKLAEELLDLLCENLGLEKGYLK-----NAFYGSKGP-NFGTKVSNYPPCPKPD 169
Query: 222 RAMGLAAHTDSSLFTILYQ-NSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGL 280
GL AHTD+ +L+Q + VSGLQ+L++G W+ VPP ++VVN+GD L +++NG
Sbjct: 170 LIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ-WIDVPPXRHSIVVNLGDQLEVITNGK 228
Query: 281 YPSVLHRAVATRKN-RLSIAYFYGLPSDLQISPLENLV---GPSQPPLYRSISWSEYLRM 336
Y SV HR +A + R S+A FY SD I P LV +Y + +Y ++
Sbjct: 229 YKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKL 288
Query: 337 KA 338
A
Sbjct: 289 YA 290
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 123/295 (41%), Gaps = 26/295 (8%)
Query: 68 IGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSPDAFEGY-----G 122
+G + + +G + ++ + A + A+ ++++ F LP E K + A GY
Sbjct: 26 LGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVE 85
Query: 123 FARISSFFS-KLMWYEGFTNVGSPLDHFCQ------LWPQDYNMHCNVVEEYKKEMKKLA 175
A+ + + K W+ G P H + +WP + + V +
Sbjct: 86 TAKGADHYDLKEFWHXGRD---LPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXG 142
Query: 176 ERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLF 235
+++ I L R+ K +G+ S L +YP P + AH D +
Sbjct: 143 GKVLEAIATYLKLERDFFKPTVQDGN-----SVLRLLHYPPIPKDATGVRAGAHGDINTI 197
Query: 236 TILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAV---ATR 292
T+L GL+VL W+ + P LV+N+GD L L+N + PS +HR V R
Sbjct: 198 TLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPER 257
Query: 293 KN--RLSIAYFYGLPSDLQISPLENLVGPSQPPLY-RSISWSEYLRMKAKHFNKA 344
+ R S +F SD +I L+N V P Y SI+ E+L+ + + A
Sbjct: 258 RGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLREIKLA 312
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 7/151 (4%)
Query: 158 NMHCNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPAC 217
++ N++ Y+K +E L + S + P H + L +YP
Sbjct: 101 SLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPX 160
Query: 218 PDPDR--AMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHI 275
+ A+ AAH D +L T+L + GLQV + W+ VP +++N+GD L
Sbjct: 161 TGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQE 220
Query: 276 LSNGLYPSVLHRAVATR-----KNRLSIAYF 301
S+G +PS HR + K+R+S+ F
Sbjct: 221 ASDGYFPSTSHRVINPEGTDKTKSRISLPLF 251
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 218 PDPDRAMGLAA---------HTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVN 268
P P+ A+ AA H D SL T+LYQ++V LQV G+ + ++N
Sbjct: 194 PYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-ETAAGYQDIEADDTGYLIN 252
Query: 269 VGDMLHILSNGLYPSVLHRAVATRKNRLSIAYFYGLPSDLQISPLE 314
G + L+N Y + +HR R S+ +F L D I P +
Sbjct: 253 CGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVIDPFD 298
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 218 PDPDRAMGLAA---------HTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVN 268
P P+ A+ AA H D SL T+LYQ++V LQV G+ + ++N
Sbjct: 194 PYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-ETAAGYQDIEADDTGYLIN 252
Query: 269 VGDMLHILSNGLYPSVLHRAVATRKNRLSIAYFYGLPSDLQISPLE 314
G + L+N Y + +HR R S+ +F L D I P +
Sbjct: 253 CGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVIDPFD 298
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 10/51 (19%)
Query: 162 NVVEEYKKEMKKLAERLMCLILRSLGT----TREDIKWPGLNGDFKDHPSP 208
NVV + + +++KL++RL +SLG T E+++ P + FKD P P
Sbjct: 197 NVVRD-RPDIQKLSDRL-----KSLGAEHVITEEELRRPEMKNFFKDMPQP 241
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 10/51 (19%)
Query: 162 NVVEEYKKEMKKLAERLMCLILRSLGT----TREDIKWPGLNGDFKDHPSP 208
NVV + + +++KL++RL +SLG T E+++ P + FKD P P
Sbjct: 184 NVVRD-RPDIQKLSDRL-----KSLGAEHVITEEELRRPEMKNFFKDMPQP 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,074,738
Number of Sequences: 62578
Number of extensions: 468594
Number of successful extensions: 935
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 12
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)