BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043986
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 4/174 (2%)
Query: 5 EYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMG 64
EY K L+ LA K+ + LGL + + K G + +++N YP CP P A+G
Sbjct: 171 EYAKCLRLLATKVFKALSVGLGLEPDRLE--KEVGGLEELLLQMKINYYPKCPQPELALG 228
Query: 65 LAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSAL 124
+ HTD S LT + GLQ++ + WV V ++V+ +GD ++I NG++KS L
Sbjct: 229 VEAHTDVSALTFILHNMVPGLQLFYEG-KWVTAKCVPDSIVMHIGDTLEILSNGKYKSIL 287
Query: 125 HRALVNNTRHRISTAYFYGPPQD-VKISPSVKLTDHDHPILYRPVTWREYLDAK 177
HR LVN + RIS A F PP+D + + P ++ + P + P T+ ++++ K
Sbjct: 288 HRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 341
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 4/174 (2%)
Query: 5 EYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMG 64
EY K L+ LA K+ + LGL + + K G + +++N YP CP P A+G
Sbjct: 170 EYAKCLRLLATKVFKALSVGLGLEPDRLE--KEVGGLEELLLQMKINYYPKCPQPELALG 227
Query: 65 LAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSAL 124
+ HTD S LT + GLQ++ + WV V ++V+ +GD ++I NG++KS L
Sbjct: 228 VEAHTDVSALTFILHNMVPGLQLFYEG-KWVTAKCVPDSIVMHIGDTLEILSNGKYKSIL 286
Query: 125 HRALVNNTRHRISTAYFYGPPQD-VKISPSVKLTDHDHPILYRPVTWREYLDAK 177
HR LVN + RIS A F PP+D + + P ++ + P + P T+ ++++ K
Sbjct: 287 HRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 6/162 (3%)
Query: 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPK-YGCKSPQGVLQLNSYPVCPDP 59
+V ++ K L+ LAE++L L+ +LGL + + K YG K P ++++YP CP P
Sbjct: 112 EVXRDFAKRLEKLAEELLDLLCENLGLEK---GYLKNAFYGSKGPNFGTKVSNYPPCPKP 168
Query: 60 NRAMGLAPHTDSSLLTSLYQGN-TSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNG 118
+ GL HTD+ + L+Q + SGLQ+ +D W+ V P ++VV +GD +++ NG
Sbjct: 169 DLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-QWIDVPPXRHSIVVNLGDQLEVITNG 227
Query: 119 RFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHD 160
++KS HR + R S A FY P D I P+ L + +
Sbjct: 228 KYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKE 269
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPN 60
+ EY K L+ LA K+ + LGL + + K G + ++N YP CP P
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLE--KEVGGLEELLLQXKINYYPKCPQPE 224
Query: 61 RAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRF 120
A+G+ HTD S LT + GLQ++ + WV V ++V +GD ++I NG++
Sbjct: 225 LALGVEAHTDVSALTFILHNXVPGLQLFYEG-KWVTAKCVPDSIVXHIGDTLEILSNGKY 283
Query: 121 KSALHRALVNNTRHRISTAYFYGPPQD-VKISPSVKLTDHDHPILYRPVTWREYLDAK 177
KS LHR LVN + RIS A F PP+D + + P + + P + P T+ ++++ K
Sbjct: 284 KSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHK 341
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 10 LKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHT 69
L G K+L + L L ++ +FKP + VL+L YP P + H
Sbjct: 138 LDGXGGKVLEAIATYLKLERD---FFKPT--VQDGNSVLRLLHYPPIPKDATGVRAGAHG 192
Query: 70 DSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALV 129
D + +T L GL+V + W+P++P G LV+ +GD ++ N S +HR +V
Sbjct: 193 DINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VV 251
Query: 130 NNTRH-----RISTAYFYGPPQDVKISPSVKLTDHDHPILY-RPVTWREYLDAK 177
N R ST +F D +I ++P Y +T E+L +
Sbjct: 252 NPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQR 305
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 37 PKYGCKSPQGVLQLNSYP--VCPDPNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGW 94
P+ S + +L++ YP + A+ A H D +L+T L N GLQV + W
Sbjct: 141 PEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSW 200
Query: 95 VPVHPVSGALVVIVGDLMQITCNGRFKSALHRAL----VNNTRHRISTAYFYGPPQDVKI 150
+ V G +++ +GD +Q +G F S HR + + T+ RIS F P V +
Sbjct: 201 LDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVL 260
Query: 151 S 151
S
Sbjct: 261 S 261
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 63/159 (39%), Gaps = 17/159 (10%)
Query: 5 EYQKELKGLAEKILGLMFRSLGLTQEDIA-WFKPKYGCKSPQGVLQLNSYP-VCPDPNRA 62
+Y ++ GL+ +L +LG + A FKP S + L YP + P P A
Sbjct: 144 QYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLAS----VVLIRYPYLDPYPEAA 199
Query: 63 MGLAP---------HTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQ 113
+ A H D SL+T LYQ N LQV G+ + ++ G M
Sbjct: 200 IKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-ETAAGYQDIEADDTGYLINCGSYMA 258
Query: 114 ITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISP 152
N +K+ +HR N R S +F D I P
Sbjct: 259 HLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 63/159 (39%), Gaps = 17/159 (10%)
Query: 5 EYQKELKGLAEKILGLMFRSLGLTQEDIA-WFKPKYGCKSPQGVLQLNSYP-VCPDPNRA 62
+Y ++ GL+ +L +LG + A FKP S + L YP + P P A
Sbjct: 144 QYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLAS----VVLIRYPYLDPYPEAA 199
Query: 63 MGLAP---------HTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQ 113
+ A H D SL+T LYQ N LQV G+ + ++ G M
Sbjct: 200 IKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-ETAAGYQDIEADDTGYLINCGSYMA 258
Query: 114 ITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISP 152
N +K+ +HR N R S +F D I P
Sbjct: 259 HLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDP 296
>pdb|3QC8|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With
P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn
Motif Of Ubx Domain Suffering Conformational Change
Length = 178
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 59 PNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNG 118
PNR + + + + SL Q LQ++R + + A+ +++ D TC+
Sbjct: 5 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD---DTCSD 61
Query: 119 RFKSALHRALVNNTRHRISTAYFYGPPQDVK 149
K ++R + NN R R+ P DVK
Sbjct: 62 E-KIRMNRVVRNNLRVRLGDVISIQPCPDVK 91
>pdb|3CLE|L Chain L, Hiv Neutralizing Monoclonal Antibody Yz23
pdb|3CLF|L Chain L, Hiv Neutralizing Monoclonal Antibody Yz23
Length = 214
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 2 VMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNR 61
VM + QK + + + ++ IAW++ K G +SP+ ++ L SY P+R
Sbjct: 3 VMTQSQKFMSTSVGDRVSISCKASQNVGNIIAWYQQKPG-QSPKALIYLASYRYSGVPDR 61
Query: 62 AMGLAPHTDSSLLTSLYQ 79
G TD +L S Q
Sbjct: 62 FTGSGSGTDFTLTISNVQ 79
>pdb|2PJH|B Chain B, Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
Length = 193
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 59 PNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNG 118
PNR + + + + SL Q LQ++R + + A+ +++ D TC+
Sbjct: 3 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD---DTCSD 59
Query: 119 RFKSALHRALVNNTRHRISTAYFYGPPQDVK 149
K ++R + NN R R+ P DVK
Sbjct: 60 E-KIRMNRVVRNNLRVRLGDVISIQPCPDVK 89
>pdb|3TIW|A Chain A, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
pdb|3TIW|B Chain B, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
Length = 187
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 59 PNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNG 118
PNR + + + + SL Q LQ++R + + A+ +++ D TC+
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD---DTCSD 79
Query: 119 RFKSALHRALVNNTRHRISTAYFYGPPQDVK 149
K ++R + NN R R+ P DVK
Sbjct: 80 E-KIRMNRVVRNNLRVRLGDVISIQPCPDVK 109
>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
Length = 186
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 59 PNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNG 118
PNR + + + + SL Q LQ++R + + A+ +++ D TC+
Sbjct: 22 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD---DTCSD 78
Query: 119 RFKSALHRALVNNTRHRISTAYFYGPPQDVK 149
K ++R + NN R R+ P DVK
Sbjct: 79 E-KIRMNRVVRNNLRVRLGDVISIQPCPDVK 108
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 59 PNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNG 118
PNR + + + + SL Q LQ++R + + A+ +++ D TC+
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD---DTCSD 79
Query: 119 RFKSALHRALVNNTRHRISTAYFYGPPQDVK 149
K ++R + NN R R+ P DVK
Sbjct: 80 E-KIRMNRVVRNNLRVRLGDVISIQPCPDVK 109
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 59 PNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNG 118
PNR + + + + SL Q LQ++R + + A+ +++ D TC+
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD---DTCSD 79
Query: 119 RFKSALHRALVNNTRHRISTAYFYGPPQDVK 149
K ++R + NN R R+ P DVK
Sbjct: 80 E-KIRMNRVVRNNLRVRLGDVISIQPCPDVK 109
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 59 PNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNG 118
PNR + + + + SL Q LQ++R + + A+ +++ D TC+
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD---DTCSD 79
Query: 119 RFKSALHRALVNNTRHRISTAYFYGPPQDVK 149
K ++R + NN R R+ P DVK
Sbjct: 80 E-KIRMNRVVRNNLRVRLGDVISIQPCPDVK 109
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 59 PNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNG 118
PNR + + + + SL Q LQ++R + + A+ +++ D TC+
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD---DTCSD 79
Query: 119 RFKSALHRALVNNTRHRISTAYFYGPPQDVK 149
K ++R + NN R R+ P DVK
Sbjct: 80 E-KIRMNRVVRNNLRVRLGDVISIQPCPDVK 109
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 14/76 (18%)
Query: 124 LHRALVNNTRHRISTAYFYGPPQ----DVKISP--------SVKLTDHDHPILY--RPVT 169
L R R ++ +F G PQ ++ + P V + H P+ Y RPV
Sbjct: 96 LDRGSPPPAREALAIVFFGGQPQPNVTELVVGPLPQPSYMRDVTVERHGGPLPYYRRPVL 155
Query: 170 WREYLDAKATHFNKAI 185
REYLD FN+ +
Sbjct: 156 LREYLDIDQMIFNREL 171
>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
Length = 211
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 59 PNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNG 118
PNR + + + + SL Q LQ++R + + A+ +++ D TC+
Sbjct: 26 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXKRREAVCIVLSD---DTCSD 82
Query: 119 RFKSALHRALVNNTRHRISTAYFYGPPQDVK 149
K ++R + NN R R+ P DVK
Sbjct: 83 E-KIRMNRVVRNNLRVRLGDVISIQPCPDVK 112
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 27.7 bits (60), Expect = 4.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 7 QKELKGLAEKILGLMFRSLGLTQEDIA 33
+ E++ L+EK+ G F L +T+EDIA
Sbjct: 501 EAEVEALSEKLRGARFVRLEVTEEDIA 527
>pdb|3HC0|L Chain L, Bha10 Igg1 Wild-Type Fab - Antibody Directed At Human
Ltbr
pdb|3HC0|B Chain B, Bha10 Igg1 Wild-Type Fab - Antibody Directed At Human
Ltbr
Length = 213
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 31 DIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQ 79
++AW++ K G K+P+ ++ SY P+R G TD +L S Q
Sbjct: 32 NVAWYQQKPG-KAPKSLISSASYRYSGVPSRFSGSGSGTDFTLTISSLQ 79
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 60 NRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVV 106
+R MG+ P S + G T+GLQ+ +++V +HP LVV
Sbjct: 112 HRLMGIQPFARSFEIKEAXYGATAGLQLAKNHVA---LHPDKKVLVV 155
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 7 QKELKGLAEKILGLMFRSLGLTQEDIAWF 35
+ E++ L+EK+ G F L +T+EDIA
Sbjct: 364 EAEVEALSEKLRGARFVRLEVTEEDIAEI 392
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
Length = 388
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 60 NRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVV 106
+R MG+ P S + G T+GLQ+ +++V +HP LVV
Sbjct: 98 HRLMGIQPFARSFEIKEAXYGATAGLQLAKNHVA---LHPDKKVLVV 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,301,268
Number of Sequences: 62578
Number of extensions: 264922
Number of successful extensions: 543
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 26
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)