Query 043986
Match_columns 195
No_of_seqs 175 out of 1088
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:17:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02254 gibberellin 3-beta-di 100.0 4.5E-56 9.7E-61 383.8 17.7 190 1-190 165-354 (358)
2 PLN02904 oxidoreductase 100.0 2.9E-54 6.2E-59 372.5 18.2 186 1-192 168-356 (357)
3 PLN02947 oxidoreductase 100.0 3.4E-54 7.3E-59 373.9 17.4 187 1-190 182-371 (374)
4 PLN03001 oxidoreductase, 2OG-F 100.0 3.8E-54 8.3E-59 357.7 16.8 175 1-181 76-250 (262)
5 PLN02216 protein SRG1 100.0 6.8E-54 1.5E-58 370.3 17.6 185 1-190 169-357 (357)
6 PLN02912 oxidoreductase, 2OG-F 100.0 1.3E-53 2.8E-58 367.5 17.0 184 1-190 157-345 (348)
7 PLN02639 oxidoreductase, 2OG-F 100.0 1.9E-53 4.1E-58 365.3 17.9 183 1-189 150-336 (337)
8 PLN02276 gibberellin 20-oxidas 100.0 1.5E-53 3.3E-58 368.7 17.0 183 2-190 167-352 (361)
9 PLN02515 naringenin,2-oxogluta 100.0 2.3E-53 4.9E-58 367.0 17.4 184 1-190 155-339 (358)
10 PLN02750 oxidoreductase, 2OG-F 100.0 2.2E-53 4.7E-58 365.9 17.2 180 1-185 153-333 (345)
11 PLN02758 oxidoreductase, 2OG-F 100.0 3.3E-53 7.1E-58 366.5 17.6 184 1-190 171-359 (361)
12 PLN02997 flavonol synthase 100.0 9.4E-53 2E-57 359.1 17.8 176 1-180 141-316 (325)
13 PLN03002 oxidoreductase, 2OG-F 100.0 1.2E-52 2.5E-57 359.7 18.0 183 1-187 140-327 (332)
14 PLN02365 2-oxoglutarate-depend 100.0 7.1E-53 1.5E-57 356.6 16.4 174 1-183 112-288 (300)
15 PLN02299 1-aminocyclopropane-1 100.0 8.9E-53 1.9E-57 358.8 17.1 187 1-190 115-308 (321)
16 PLN02156 gibberellin 2-beta-di 100.0 1.7E-52 3.7E-57 358.5 18.3 179 1-182 135-316 (335)
17 PLN03178 leucoanthocyanidin di 100.0 8.3E-53 1.8E-57 364.1 16.2 188 1-191 168-359 (360)
18 PLN02704 flavonol synthase 100.0 1.3E-52 2.9E-57 359.8 15.7 176 1-180 157-332 (335)
19 PTZ00273 oxidase reductase; Pr 100.0 6.7E-52 1.4E-56 353.6 18.3 176 1-182 137-313 (320)
20 PLN02393 leucoanthocyanidin di 100.0 6.9E-52 1.5E-56 358.5 17.3 187 1-190 170-360 (362)
21 PLN02485 oxidoreductase 100.0 1.4E-51 3E-56 352.8 17.7 177 1-181 143-326 (329)
22 PLN00417 oxidoreductase, 2OG-F 100.0 1.9E-50 4.1E-55 347.9 17.1 171 1-176 162-333 (348)
23 PLN02984 oxidoreductase, 2OG-F 100.0 2.8E-50 6.1E-55 345.6 17.6 176 1-192 158-341 (341)
24 KOG0143 Iron/ascorbate family 100.0 3.8E-50 8.2E-55 342.3 17.1 177 1-182 135-312 (322)
25 PLN02403 aminocyclopropanecarb 100.0 6.5E-49 1.4E-53 332.5 16.5 182 1-192 110-298 (303)
26 COG3491 PcbC Isopenicillin N s 100.0 3.2E-47 6.9E-52 315.2 16.2 162 2-168 135-297 (322)
27 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.9 2.3E-27 4.9E-32 169.1 7.3 95 46-144 2-98 (98)
28 PF13640 2OG-FeII_Oxy_3: 2OG-F 97.1 0.00035 7.5E-09 49.2 2.4 79 48-143 1-100 (100)
29 smart00702 P4Hc Prolyl 4-hydro 96.1 0.11 2.5E-06 40.2 10.8 107 12-143 59-178 (178)
30 PRK05467 Fe(II)-dependent oxyg 95.6 0.14 3E-06 41.9 9.7 49 82-143 129-177 (226)
31 PF12851 Tet_JBP: Oxygenase do 95.2 0.076 1.7E-06 41.5 6.6 71 62-143 84-170 (171)
32 PF13532 2OG-FeII_Oxy_2: 2OG-F 91.1 1.4 3E-05 34.4 7.7 87 46-140 97-193 (194)
33 TIGR02466 conserved hypothetic 89.2 5 0.00011 32.2 9.5 38 93-142 160-198 (201)
34 PRK15401 alpha-ketoglutarate-d 83.0 23 0.00051 28.7 11.4 80 47-141 117-211 (213)
35 PF13759 2OG-FeII_Oxy_5: Putat 77.5 3.3 7.2E-05 29.0 3.4 36 93-140 64-100 (101)
36 TIGR00568 alkb DNA alkylation 71.2 19 0.00042 28.0 6.6 60 46-111 95-162 (169)
37 PF12791 RsgI_N: Anti-sigma fa 59.7 6.7 0.00015 24.4 1.6 31 87-120 10-40 (56)
38 COG2140 Thermophilic glucose-6 56.8 29 0.00064 28.1 5.2 46 76-121 116-162 (209)
39 PF06820 Phage_fiber_C: Putati 47.4 24 0.00052 22.6 2.6 37 62-98 15-61 (64)
40 PLN00052 prolyl 4-hydroxylase; 42.1 2.2E+02 0.0048 24.4 10.6 48 95-146 206-254 (310)
41 PF05118 Asp_Arg_Hydrox: Aspar 36.0 54 0.0012 25.1 3.7 39 102-140 115-157 (163)
42 PRK01964 4-oxalocrotonate taut 35.2 55 0.0012 20.6 3.1 25 8-32 15-39 (64)
43 PF01361 Tautomerase: Tautomer 34.8 62 0.0013 19.9 3.2 25 8-32 14-38 (60)
44 PRK02220 4-oxalocrotonate taut 33.3 62 0.0013 19.9 3.1 25 8-32 15-39 (61)
45 PRK02289 4-oxalocrotonate taut 31.7 64 0.0014 20.1 2.9 25 8-32 15-39 (60)
46 KOG3889 Predicted gamma-butyro 31.6 33 0.00072 29.2 1.9 23 62-89 186-208 (371)
47 PF00046 Homeobox: Homeobox do 30.7 32 0.00069 20.9 1.3 34 2-35 14-48 (57)
48 cd00491 4Oxalocrotonate_Tautom 30.5 74 0.0016 19.2 3.0 25 8-32 14-38 (58)
49 TIGR00013 taut 4-oxalocrotonat 30.1 76 0.0016 19.6 3.1 25 8-32 15-39 (63)
50 PRK00745 4-oxalocrotonate taut 30.0 79 0.0017 19.5 3.2 25 8-32 15-39 (62)
51 PF10411 DsbC_N: Disulfide bon 28.5 1.5E+02 0.0033 18.4 4.8 37 79-117 19-56 (57)
52 KOG2107 Uncharacterized conser 26.1 1E+02 0.0022 24.2 3.6 34 74-108 96-129 (179)
53 PF11142 DUF2917: Protein of u 25.1 81 0.0017 20.2 2.5 27 93-119 27-53 (63)
54 PHA00689 hypothetical protein 24.9 72 0.0016 19.7 2.1 19 80-98 23-41 (62)
55 KOG2996 Rho guanine nucleotide 24.5 1.2E+02 0.0026 28.6 4.3 85 81-176 600-688 (865)
56 KOG4520 Predicted coiled-coil 24.2 1.2E+02 0.0026 24.3 3.7 28 2-29 61-88 (238)
57 PF08140 Cuticle_1: Crustacean 23.4 1.1E+02 0.0024 18.0 2.6 30 89-119 7-36 (40)
58 TIGR01565 homeo_ZF_HD homeobox 22.5 51 0.0011 21.0 1.1 31 2-32 15-49 (58)
59 PTZ00397 macrophage migration 22.4 1.1E+02 0.0023 21.8 3.0 25 8-32 72-96 (116)
60 PF11548 Receptor_IA-2: Protei 21.7 85 0.0018 22.0 2.2 23 13-35 18-40 (91)
61 PF06560 GPI: Glucose-6-phosph 21.6 1.5E+02 0.0033 23.4 3.9 15 93-107 108-122 (182)
62 PF11876 DUF3396: Protein of u 21.1 27 0.00058 28.1 -0.4 59 69-127 105-170 (208)
63 COG3145 AlkB Alkylated DNA rep 20.0 1.7E+02 0.0037 23.4 3.9 25 92-116 154-178 (194)
No 1
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=4.5e-56 Score=383.78 Aligned_cols=190 Identities=69% Similarity=1.132 Sum_probs=174.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+||++|+++|||++++|+.+........+.+.+|+||||||+.++..+|+++|||+|+||||+||
T Consensus 165 ~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Qd 244 (358)
T PLN02254 165 DVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQS 244 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEEEEecC
Confidence 36899999999999999999999999999888654311112456689999999999988889999999999999999999
Q ss_pred CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCCC
Q 043986 81 NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHD 160 (195)
Q Consensus 81 ~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~ 160 (195)
+++||||++++|+|++|+|+||++|||+||+||+||||+|||+.|||+.++.++|||++||+.|+.|++|+|++++++++
T Consensus 245 ~v~GLQV~~~~~~Wi~V~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~lv~~~ 324 (358)
T PLN02254 245 NTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVNKTRHRISVAYFYGPPSDVQISPLPKLVDPN 324 (358)
T ss_pred CCCCceEECCCCEEEEcccCCCCEEEEhHHHHHHHhCCeeccccceeecCCCCCEEEEEEEecCCCCcEEeCcHHhcCCC
Confidence 99999999888789999999999999999999999999999999999998888999999999999999999999999998
Q ss_pred CCCCCCCccHHHHHHHHHHhhhhhhhhhcc
Q 043986 161 HPILYRPVTWREYLDAKATHFNKAIELIRY 190 (195)
Q Consensus 161 ~~~~y~~~~~~ey~~~~~~~~~~~l~~~~~ 190 (195)
+|++|++++|+||+..+.+.+.+.++.+|+
T Consensus 325 ~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~ 354 (358)
T PLN02254 325 HPPLYRSVTWKEYLATKAKHFNKALSLIRN 354 (358)
T ss_pred CCcccCCcCHHHHHHHHHHhhhhhhhhhhc
Confidence 999999999999999998888888888776
No 2
>PLN02904 oxidoreductase
Probab=100.00 E-value=2.9e-54 Score=372.53 Aligned_cols=186 Identities=31% Similarity=0.538 Sum_probs=170.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+|+++||++|||++++|+.. +....+.+|++|||||+.++..+|+++|||+|+||||+|+
T Consensus 168 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~-----~~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~qd 242 (357)
T PLN02904 168 EKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEE-----IEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQS 242 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-----hcCcccEEEeeecCCCCCcccccCCcCccCCCceEEEecC
Confidence 46899999999999999999999999999888543 2445678999999999988889999999999999999997
Q ss_pred CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCCC
Q 043986 81 NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHD 160 (195)
Q Consensus 81 ~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~ 160 (195)
.+||||++++|+|++|+|.||++|||+||+||+||||+|||++|||+.++.++|||++||+.|+.|+.|+|++++++++
T Consensus 243 -~~GLQV~~~~g~Wi~V~p~pgalVVNiGD~Le~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~Pl~~~v~~~ 321 (357)
T PLN02904 243 -SQGLQIMDCNKNWVCVPYIEGALIVQLGDQVEVMSNGIYKSVVHRVTVNKDYKRLSFASLHSLPLHKKISPAPELVNEN 321 (357)
T ss_pred -CCeeeEEeCCCCEEECCCCCCeEEEEccHHHHHHhCCeeeccCCcccCCCCCCEEEEEEeecCCCCCeEeCCHHHcCCC
Confidence 5899999988899999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHHhhh---hhhhhhccCC
Q 043986 161 HPILYRPVTWREYLDAKATHFN---KAIELIRYDA 192 (195)
Q Consensus 161 ~~~~y~~~~~~ey~~~~~~~~~---~~l~~~~~~~ 192 (195)
+|++|++++|+||+..+.++.. +.|+.+++|.
T Consensus 322 ~p~~Y~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PLN02904 322 KPAAYGEFSFNDFLDYISSNDITQERFIDTLKKNN 356 (357)
T ss_pred CCCcCCCCCHHHHHHHHHhcccCcchHHHHhccCC
Confidence 9999999999999999877653 4778887764
No 3
>PLN02947 oxidoreductase
Probab=100.00 E-value=3.4e-54 Score=373.86 Aligned_cols=187 Identities=32% Similarity=0.564 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+|+.+|+++||++|||+++..+++.+. +....+.+|+||||||++++..+|+++|||+|+||||+|+
T Consensus 182 ~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~--~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd 259 (374)
T PLN02947 182 KVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEE--FEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQD 259 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHH--hcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEec
Confidence 36899999999999999999999999975433222211 3446689999999999999889999999999999999999
Q ss_pred CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCCC
Q 043986 81 NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHD 160 (195)
Q Consensus 81 ~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~ 160 (195)
+++||||++ +|+|++|+|+||++|||+||+||+||||+|||++|||+.++.++|||++||+.|+.|++|.|++++++++
T Consensus 260 ~v~GLQV~~-~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~Pl~~lv~~~ 338 (374)
T PLN02947 260 EVEGLQIMH-AGRWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVNSTKPRISVASLHSLPFERVVGPAPELVDEQ 338 (374)
T ss_pred CCCCeeEeE-CCEEEeCCCCCCeEEEEeCceeeeeeCCEEeccccccccCCCCCEEEEEEEecCCCCCEEeCChHhcCCC
Confidence 999999998 5699999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHHhhh---hhhhhhcc
Q 043986 161 HPILYRPVTWREYLDAKATHFN---KAIELIRY 190 (195)
Q Consensus 161 ~~~~y~~~~~~ey~~~~~~~~~---~~l~~~~~ 190 (195)
+|++|++++|+||++.+..... +.|+.+|+
T Consensus 339 ~p~~Y~~~~~~ey~~~~~~~~~~~~~~l~~~~~ 371 (374)
T PLN02947 339 NPRRYMDTDFATFLAYLASAEGKHKNFLESRKL 371 (374)
T ss_pred CCCcCCCCCHHHHHHHHHHhccCchhhhhhhhc
Confidence 9999999999999998765543 37777765
No 4
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.8e-54 Score=357.71 Aligned_cols=175 Identities=34% Similarity=0.574 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+|+++++++||+++++|+.. +....+.+|++||||++.++..+|+++|||+|+||||+||
T Consensus 76 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~-----~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd 150 (262)
T PLN03001 76 EVVGEYGDCMKALAQKLLAFISESLGLPCSCIEDA-----VGDFYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQD 150 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-----hcCcchhheeecCCCCCCcccccCCcCCcCCCeeEEEEeC
Confidence 46899999999999999999999999999988554 2344578999999999988889999999999999999999
Q ss_pred CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCCC
Q 043986 81 NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHD 160 (195)
Q Consensus 81 ~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~ 160 (195)
+++||||+.+ |+|++|+|.||++|||+||+|++||||+|||++|||+.+..++|||++||+.|+.|++|+|++++++++
T Consensus 151 ~v~GLqV~~~-g~Wi~V~p~p~a~vVNiGD~l~~~tng~~~S~~HRVv~~~~~~R~Sia~F~~p~~d~~i~p~~e~v~~~ 229 (262)
T PLN03001 151 DVEGLQLLKD-AEWLMVPPISDAILIIIADQTEIITNGNYKSAQHRAIANANKARLSVATFHDPAKTAKIAPASALSTES 229 (262)
T ss_pred CCCceEEeeC-CeEEECCCCCCcEEEEccHHHHHHhCCccccccceEEcCCCCCEEEEEEEEcCCCCCEEeCChHhcCCC
Confidence 9999999864 589999999999999999999999999999999999998888999999999999999999999999998
Q ss_pred CCCCCCCccHHHHHHHHHHhh
Q 043986 161 HPILYRPVTWREYLDAKATHF 181 (195)
Q Consensus 161 ~~~~y~~~~~~ey~~~~~~~~ 181 (195)
+|++|++++++||+..+..+.
T Consensus 230 ~p~~y~~~~~~e~l~~~~~~~ 250 (262)
T PLN03001 230 FPPRYCEIVYGEYVSSWYSKG 250 (262)
T ss_pred CCCcCCCccHHHHHHHHHHhc
Confidence 999999999999999887654
No 5
>PLN02216 protein SRG1
Probab=100.00 E-value=6.8e-54 Score=370.31 Aligned_cols=185 Identities=31% Similarity=0.574 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEee-
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQ- 79 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q- 79 (195)
+++++|+++|.+++.+|++++|++|||++++|+.... ....+.||++|||||+.++..+|+++|||+|+||||+|
T Consensus 169 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~----~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~ 244 (357)
T PLN02216 169 DTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFD----DDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQV 244 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc----cCchheeEEeecCCCCCcccccCccCcccCceEEEEEec
Confidence 3689999999999999999999999999998855421 22456899999999999888999999999999999999
Q ss_pred cCCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCC
Q 043986 80 GNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDH 159 (195)
Q Consensus 80 ~~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~ 159 (195)
++++||||+. +|+|++|+|+||++|||+||+||+||||+|||++|||+.++.++|+|++||+.|+.|++|+|+++++++
T Consensus 245 ~~v~GLQV~~-~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~ 323 (357)
T PLN02216 245 NEVEGLQIKK-DGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVER 323 (357)
T ss_pred CCCCceeEEE-CCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCC
Confidence 5799999985 459999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred CCCCCCCCccHHHHHHHHHHhhh---hhhhhhcc
Q 043986 160 DHPILYRPVTWREYLDAKATHFN---KAIELIRY 190 (195)
Q Consensus 160 ~~~~~y~~~~~~ey~~~~~~~~~---~~l~~~~~ 190 (195)
++|++|++++|+||+..+..... ..|+.+||
T Consensus 324 ~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~~ 357 (357)
T PLN02216 324 QKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357 (357)
T ss_pred CCCCCCCCcCHHHHHHHHHhcccCCcchhhhhcC
Confidence 99999999999999998876553 47777664
No 6
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.3e-53 Score=367.46 Aligned_cols=184 Identities=33% Similarity=0.622 Sum_probs=166.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+|++++|++|||++++|+... ....+.||++||||++.++..+|+++|||+|+||||+||
T Consensus 157 ~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~-----~~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Qd 231 (348)
T PLN02912 157 EVTAEYATSVRALVLTLLEAISESLGLEKDRVSNTL-----GKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQD 231 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh-----cCccceeeeeecCCCCChhhcCCcCCCcCCCceEEEEEC
Confidence 468999999999999999999999999998886542 345678999999999988789999999999999999999
Q ss_pred CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCCC
Q 043986 81 NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHD 160 (195)
Q Consensus 81 ~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~ 160 (195)
+++||||+. +|+|++|+|.||++|||+||+|++||||+|||++|||+.++.++|||++||++|+.|+.|+|++++++++
T Consensus 232 ~v~GLQV~~-~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~~v~~~ 310 (348)
T PLN02912 232 EVSGLQVFK-DGKWIAVNPIPNTFIVNLGDQMQVISNDKYKSVLHRAVVNTDKERISIPTFYCPSEDAVIGPAQELINEE 310 (348)
T ss_pred CCCceEEEE-CCcEEECCCcCCeEEEEcCHHHHHHhCCEEEcccccccCCCCCCEEEEEEEecCCCCCeEeCCHHHhCcC
Confidence 999999995 4589999999999999999999999999999999999988888999999999999999999999999865
Q ss_pred --CCCCCCCccHHHHHHHHHHhh---hhhhhhhcc
Q 043986 161 --HPILYRPVTWREYLDAKATHF---NKAIELIRY 190 (195)
Q Consensus 161 --~~~~y~~~~~~ey~~~~~~~~---~~~l~~~~~ 190 (195)
+|++|++++|+||+..+.... ...|+.+|.
T Consensus 311 ~~~p~~y~~~~~~ey~~~~~~~~~~~~~~l~~~~~ 345 (348)
T PLN02912 311 EDSLAIYRNFTYAEYFEKFWDTAFATESCIDSFKA 345 (348)
T ss_pred CCCCCCCCCCcHHHHHHHHHhcccCCcchhhhhhc
Confidence 489999999999999887544 236777765
No 7
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.9e-53 Score=365.29 Aligned_cols=183 Identities=37% Similarity=0.610 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+|++++|++|||++++|+.. +....+.+|++||||++.++..+|+++|||+|+||||+|+
T Consensus 150 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~-----~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd 224 (337)
T PLN02639 150 EIVSTYCREVRELGFRLQEAISESLGLEKDYIKNV-----LGEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQD 224 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-----hCCCccEEEEEcCCCCCCcccccCCCCCcCCCceEEEEec
Confidence 36899999999999999999999999999888654 2445678999999999988888999999999999999998
Q ss_pred -CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCC
Q 043986 81 -NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDH 159 (195)
Q Consensus 81 -~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~ 159 (195)
.++||||++ +|+|++|+|.||++|||+||+|++||||+|||++|||+.++.++|||++||++|+.|++|.|+++++++
T Consensus 225 ~~v~GLQV~~-~g~Wi~V~p~pg~lVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~~~~~ 303 (337)
T PLN02639 225 QQVAGLQVLK-DGKWVAVNPHPGAFVINIGDQLQALSNGRYKSVWHRAVVNTDKERMSVASFLCPCDDAVISPAKKLTDD 303 (337)
T ss_pred CCcCceEeec-CCeEEeccCCCCeEEEechhHHHHHhCCeeeccCcccccCCCCCEEEEEEEecCCCCceEeCchHHcCC
Confidence 499999986 569999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred CCCCCCCCccHHHHHHHHHHhhh---hhhhhhc
Q 043986 160 DHPILYRPVTWREYLDAKATHFN---KAIELIR 189 (195)
Q Consensus 160 ~~~~~y~~~~~~ey~~~~~~~~~---~~l~~~~ 189 (195)
++|++|++++++||+..+..... +.|+.++
T Consensus 304 ~~p~~y~p~~~~e~~~~~~~~~~~~~~~l~~~~ 336 (337)
T PLN02639 304 GTAAVYRDFTYAEYYKKFWSRNLDQEHCLELFK 336 (337)
T ss_pred CCCCCCCCCCHHHHHHHHHhccCCCchhhHhhc
Confidence 89999999999999998865433 3555543
No 8
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=1.5e-53 Score=368.69 Aligned_cols=183 Identities=36% Similarity=0.625 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeecC
Q 043986 2 VMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQGN 81 (195)
Q Consensus 2 ~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~~ 81 (195)
++++|+++|.+++..||++||++|||++++|+.. +..+.+.+|++|||+++.++..+|+++|||+|+||||+|+.
T Consensus 167 ~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~-----~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~ 241 (361)
T PLN02276 167 VYQEYCEAMKTLSLKIMELLGISLGVDRGYYRKF-----FEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQ 241 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-----hcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecC
Confidence 6899999999999999999999999999888654 24456889999999999888899999999999999999999
Q ss_pred CCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCCCC
Q 043986 82 TSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHDH 161 (195)
Q Consensus 82 ~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~~ 161 (195)
++||||+. +|+|++|+|+||++|||+||+|++||||+|||++|||+.++.++|||++||+.|+.|+.|.|+++++++++
T Consensus 242 v~GLQV~~-~g~Wi~V~p~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~ 320 (361)
T PLN02276 242 VGGLQVFV-DNKWRSVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLAFFLCPKEDKVVRPPQELVDREG 320 (361)
T ss_pred CCceEEEE-CCEEEEcCCCCCeEEEEcHHHHHHHhCCccccccceeecCCCCCEEEEEEEecCCCCCEEeCChHhcCCCC
Confidence 99999995 56999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHhh---hhhhhhhcc
Q 043986 162 PILYRPVTWREYLDAKATHF---NKAIELIRY 190 (195)
Q Consensus 162 ~~~y~~~~~~ey~~~~~~~~---~~~l~~~~~ 190 (195)
|++|++++|+||++.+.... .+.|+.+++
T Consensus 321 p~~y~~~~~~ey~~~~~~~~~~~~~~l~~~~~ 352 (361)
T PLN02276 321 PRKYPDFTWSDLLEFTQKHYRADMNTLQAFSN 352 (361)
T ss_pred CCcCCCCCHHHHHHHHHHhcccchhHHHHHHH
Confidence 99999999999999876554 236666664
No 9
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=2.3e-53 Score=366.96 Aligned_cols=184 Identities=36% Similarity=0.599 Sum_probs=164.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+|+.+|+++++++|||++++|... +....+.+|++|||+++.++..+|+++|||+|+||||+||
T Consensus 155 ~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~~~-----~~~~~~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Qd 229 (358)
T PLN02515 155 AVTEEYSEKLMGLACKLLEVLSEAMGLEKEALTKA-----CVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQD 229 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHh-----hcCccceEEEeecCCCCChhhccCCCCCCCCCeEEEEecC
Confidence 36899999999999999999999999999888543 2334578999999999888889999999999999999999
Q ss_pred CCCceeEEeCCC-ceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCC
Q 043986 81 NTSGLQVYRDNV-GWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDH 159 (195)
Q Consensus 81 ~~~GLqv~~~~g-~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~ 159 (195)
+++||||++++| +|++|+|.||++|||+||+||+||||+|||++|||+.++.++|||++||++|+.|++|+|++ ++.+
T Consensus 230 ~v~GLQV~~~~~~~Wi~Vpp~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~P~~d~~i~Pl~-~~~~ 308 (358)
T PLN02515 230 QVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSNCSRLSIATFQNPAPDATVYPLK-VREG 308 (358)
T ss_pred CCCceEEEECCCCeEEECCCCCCeEEEEccHHHHHHhCCeeeeecceEECCCCCCEEEEEEEecCCCCCEEECCC-cCCC
Confidence 999999998764 79999999999999999999999999999999999988888999999999999999999997 5566
Q ss_pred CCCCCCCCccHHHHHHHHHHhhhhhhhhhcc
Q 043986 160 DHPILYRPVTWREYLDAKATHFNKAIELIRY 190 (195)
Q Consensus 160 ~~~~~y~~~~~~ey~~~~~~~~~~~l~~~~~ 190 (195)
++|++|++++|+||+..+...+.+.+...|.
T Consensus 309 ~~p~~y~~~t~~eyl~~~~~~~~~~~~~~~~ 339 (358)
T PLN02515 309 EKPILEEPITFAEMYRRKMSRDLELARLKKL 339 (358)
T ss_pred CCCCcCCCcCHHHHHHHHHhcccchHHHHHH
Confidence 7899999999999999987776655554443
No 10
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.2e-53 Score=365.94 Aligned_cols=180 Identities=32% Similarity=0.615 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++..|+++||++|||++++|+.. +..+.+.+|++||||++.++..+|+++|||+|+||||+||
T Consensus 153 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~-----~~~~~~~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd 227 (345)
T PLN02750 153 ELCQEYARQVEKLAFKLLELISLSLGLPADRLNGY-----FKDQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQD 227 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-----hcCcceEEEEEecCCCCCcccccCcCCCCCCCeEEEEecC
Confidence 36899999999999999999999999999988654 3456689999999999887778999999999999999999
Q ss_pred CCCceeEEe-CCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCC
Q 043986 81 NTSGLQVYR-DNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDH 159 (195)
Q Consensus 81 ~~~GLqv~~-~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~ 159 (195)
+++||||+. .+|+|++|+|.||++|||+||+|++||||+|+|++|||+.+++++|||++||+.|+.|++|+|+++++++
T Consensus 228 ~v~GLQV~~~~~g~Wi~V~p~pg~~vVNiGD~L~~~Tng~~~St~HRVv~~~~~~R~Si~~F~~P~~d~~i~pl~~~v~~ 307 (345)
T PLN02750 228 DVGGLQISRRSDGEWIPVKPIPDAFIINIGNCMQVWTNDLYWSAEHRVVVNSQKERFSIPFFFFPSHYVNIKPLDELINE 307 (345)
T ss_pred CCCceEEeecCCCeEEEccCCCCeEEEEhHHHHHHHhCCeeecccceeccCCCCCEEEEEEeecCCCCCeecCcHHhcCC
Confidence 999999986 5679999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred CCCCCCCCccHHHHHHHHHHhhhhhh
Q 043986 160 DHPILYRPVTWREYLDAKATHFNKAI 185 (195)
Q Consensus 160 ~~~~~y~~~~~~ey~~~~~~~~~~~l 185 (195)
++|++|++++|+||+..+.......+
T Consensus 308 ~~p~~y~p~~~~e~~~~~~~~~~~~~ 333 (345)
T PLN02750 308 QNPPKYKEFNWGKFFASRNRSDYKKL 333 (345)
T ss_pred CCCCccCCccHHHHHHHHHhcccccc
Confidence 89999999999999998876654443
No 11
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.3e-53 Score=366.54 Aligned_cols=184 Identities=35% Similarity=0.665 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+|+++++++|||++++|+.. +....+.||++|||+++.++..+|+++|||+|+||||+|+
T Consensus 171 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~-----~~~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd 245 (361)
T PLN02758 171 ETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEM-----FGEAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQG 245 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHH-----hcCccceeeeecCCCCCCcccccCccCccCCceeEEEEeC
Confidence 46899999999999999999999999999888554 2445688999999999988889999999999999999997
Q ss_pred C--CCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccC
Q 043986 81 N--TSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTD 158 (195)
Q Consensus 81 ~--~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~ 158 (195)
+ ++||||+++ |+|++|+|+||++|||+||+||+||||+|||+.|||+.++.++|||++||++|+.|++|.|++++++
T Consensus 246 ~~~v~GLQV~~~-g~Wi~V~p~pgalVVNiGD~L~~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~elv~ 324 (361)
T PLN02758 246 KGSCVGLQILKD-NTWVPVHPVPNALVINIGDTLEVLTNGKYKSVEHRAVTNKEKDRLSIVTFYAPSYEVELGPMPELVD 324 (361)
T ss_pred CCCCCCeeeeeC-CEEEeCCCCCCeEEEEccchhhhhcCCeeecccceeecCCCCCEEEEEEEecCCCCCeEeCCHHHcC
Confidence 4 889999876 5999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHhhh---hhhhhhcc
Q 043986 159 HDHPILYRPVTWREYLDAKATHFN---KAIELIRY 190 (195)
Q Consensus 159 ~~~~~~y~~~~~~ey~~~~~~~~~---~~l~~~~~ 190 (195)
+++|++|++++|+||+..+.+... +.++.+|+
T Consensus 325 ~~~p~~Y~~~~~~ey~~~~~~~~~~~~~~~~~~~~ 359 (361)
T PLN02758 325 DENPCKYRRYNHGEYSRHYVTSKLQGKKTLEFAKI 359 (361)
T ss_pred CCCCCcCCCccHHHHHHHHHhcccCchhhhhhhcc
Confidence 999999999999999999876553 46666665
No 12
>PLN02997 flavonol synthase
Probab=100.00 E-value=9.4e-53 Score=359.05 Aligned_cols=176 Identities=34% Similarity=0.584 Sum_probs=161.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+|+++|+++|||++++|+.... ...+.+.+|++||||++.++..+|+++|||+|+||||+||
T Consensus 141 ~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~---~~~~~~~lRl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd 217 (325)
T PLN02997 141 EVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIG---GETAEYVLRVNFYPPTQDTELVIGAAAHSDMGAIALLIPN 217 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc---CCcccceeeeecCCCCCCcccccCccCccCCCceEEEecC
Confidence 4689999999999999999999999999988854421 1223468999999999988888999999999999999999
Q ss_pred CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCCC
Q 043986 81 NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHD 160 (195)
Q Consensus 81 ~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~ 160 (195)
+++||||+.+ |+|++|+|.||++|||+||+||+||||+|||+.|||+.++..+|||++||++|+.|+.|+|++++++++
T Consensus 218 ~v~GLQV~~~-g~Wi~V~p~pgalvVNiGD~Le~~TNG~~kSt~HRVv~~~~~~R~Si~fF~~P~~d~~i~Plp~~v~~~ 296 (325)
T PLN02997 218 EVPGLQAFKD-EQWLDLNYINSAVVVIIGDQLMRMTNGRFKNVLHRAKTDKERLRISWPVFVAPRADMSVGPLPELTGDE 296 (325)
T ss_pred CCCCEEEeEC-CcEEECCCCCCeEEEEechHHHHHhCCccccccceeeCCCCCCEEEEEEEecCCCCCeEeCChHHcCCC
Confidence 9999999975 589999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHHh
Q 043986 161 HPILYRPVTWREYLDAKATH 180 (195)
Q Consensus 161 ~~~~y~~~~~~ey~~~~~~~ 180 (195)
+|++|++++|+||+..+++.
T Consensus 297 ~p~~y~~~~~~e~l~~r~~~ 316 (325)
T PLN02997 297 NPPKFETLIYNDYIDQKIRG 316 (325)
T ss_pred CCCcCCCccHHHHHHHHHhh
Confidence 99999999999999988763
No 13
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.2e-52 Score=359.68 Aligned_cols=183 Identities=26% Similarity=0.405 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCC-CCcccccccCCCCeeEEee
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPN-RAMGLAPHTDSSLLTSLYQ 79 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~-~~~g~~~HtD~~~lTlL~q 79 (195)
+++++|+++|.+|+..|+++||++|||++++|+.... ...+.+.||++||||++.++ ..+|+++|||+|+||||+|
T Consensus 140 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~---~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q 216 (332)
T PLN03002 140 ETMEKYHQEALRVSMAIAKLLALALDLDVGYFDRTEM---LGKPIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLAT 216 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhccccc---cCCCchheeeeeCCCCCCcccCccccccccCCCeEEEEee
Confidence 3689999999999999999999999999988853211 24456889999999997665 4789999999999999999
Q ss_pred cCCCceeEEeC----CCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcC
Q 043986 80 GNTSGLQVYRD----NVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVK 155 (195)
Q Consensus 80 ~~~~GLqv~~~----~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~ 155 (195)
|+++||||+++ +|+|++|+|+||++|||+||+|++||||+|||+.|||+.++ .+|||++||+.|+.|++|.|+++
T Consensus 217 d~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VVNiGD~L~~wTng~~kSt~HRVv~~~-~~R~Sia~F~~p~~d~~i~pl~~ 295 (332)
T PLN03002 217 DGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLGNG-QERYSIPFFVEPNHDCLVECLPT 295 (332)
T ss_pred CCCCceEEecCCCCCCCcEEECCCCCCeEEEEHHHHHHHHhCCeeECcCCeecCCC-CCeeEEEEEecCCCCeeEecCCc
Confidence 99999999875 36899999999999999999999999999999999999764 57999999999999999999999
Q ss_pred ccCCCCCCCCCCccHHHHHHHHHHhhhhhhhh
Q 043986 156 LTDHDHPILYRPVTWREYLDAKATHFNKAIEL 187 (195)
Q Consensus 156 ~~~~~~~~~y~~~~~~ey~~~~~~~~~~~l~~ 187 (195)
++++++|++|++++++||+..+.......+++
T Consensus 296 ~~~~~~p~~y~~~~~~e~l~~~~~~~~~~~~~ 327 (332)
T PLN03002 296 CKSESDLPKYPPIKCSTYLTQRYEETHAKLSI 327 (332)
T ss_pred ccCCCCcccCCCccHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999998766554433
No 14
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=7.1e-53 Score=356.61 Aligned_cols=174 Identities=29% Similarity=0.479 Sum_probs=160.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCC-CchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEee
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGL-TQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQ 79 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl-~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q 79 (195)
+++++|+++|.+++.+|+++|+++||| ++++|+. ..+.+|++|||+++.++...|+++|||+|+||||+|
T Consensus 112 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~---------~~~~lr~~~YP~~p~~~~~~g~~~HtD~g~lTlL~q 182 (300)
T PLN02365 112 ETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQG---------WPSQFRINKYNFTPETVGSSGVQIHTDSGFLTILQD 182 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhh---------cccceeeeecCCCCCccccccccCccCCCceEEEec
Confidence 468999999999999999999999999 7777643 136899999999988888899999999999999999
Q ss_pred cC-CCceeEEeC-CCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCcc
Q 043986 80 GN-TSGLQVYRD-NVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLT 157 (195)
Q Consensus 80 ~~-~~GLqv~~~-~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~ 157 (195)
|+ ++||||+++ +|+|++|+|+||++|||+||+||+||||+|||+.|||+.++..+|||++||+.|+.|++|.|+++++
T Consensus 183 d~~~~GLqV~~~~~g~Wi~V~p~pga~vVNiGD~l~~~TNG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~v 262 (300)
T PLN02365 183 DENVGGLEVMDPSSGEFVPVDPLPGTLLVNLGDVATAWSNGRLCNVKHRVQCKEATMRISIASFLLGPKDDDVEAPPEFV 262 (300)
T ss_pred CCCcCceEEEECCCCeEEecCCCCCeEEEEhhHHHHHHhCCceecccceeEcCCCCCEEEEEEEecCCCCCeEeCCHHHc
Confidence 84 999999987 6799999999999999999999999999999999999988888999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHHHHhhhh
Q 043986 158 DHDHPILYRPVTWREYLDAKATHFNK 183 (195)
Q Consensus 158 ~~~~~~~y~~~~~~ey~~~~~~~~~~ 183 (195)
++++|++|++++|+||+..+.+...+
T Consensus 263 ~~~~p~~y~~~~~~e~~~~~~~~~~~ 288 (300)
T PLN02365 263 DAEHPRLYKPFTYEDYRKLRLSTKLH 288 (300)
T ss_pred CCCCCccCCCccHHHHHHHHHhcccc
Confidence 98899999999999999998766543
No 15
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=8.9e-53 Score=358.78 Aligned_cols=187 Identities=31% Similarity=0.556 Sum_probs=165.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+|+++++++|||++++|+..... .......+|++||||++.++...|+++|||+|+||||+|+
T Consensus 115 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~--~~~~~~~lRl~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd 192 (321)
T PLN02299 115 KVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHG--SKGPTFGTKVSNYPPCPKPDLVKGLRAHTDAGGIILLFQD 192 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC--CCCccceeeeEecCCCCCcccccCccCccCCCeEEEEEec
Confidence 46899999999999999999999999999888543210 1234567999999999988878899999999999999997
Q ss_pred -CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCC
Q 043986 81 -NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDH 159 (195)
Q Consensus 81 -~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~ 159 (195)
+++||||+. +|+|++|+|.||++|||+||+|++||||+|||+.|||+.++.++|||++||++|+.|++|+|+++++++
T Consensus 193 ~~v~GLQV~~-~g~Wi~V~p~pg~lvVNiGD~l~~~Tng~~kS~~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~v~~ 271 (321)
T PLN02299 193 DKVSGLQLLK-DGEWVDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVVAQTDGNRMSIASFYNPGSDAVIYPAPALVEK 271 (321)
T ss_pred CCCCCcCccc-CCeEEECCCCCCeEEEEeCHHHHHHhCCceecccceeecCCCCCEEEEEEEecCCCCceEeCchHhcCc
Confidence 599999984 569999999999999999999999999999999999998888899999999999999999999999986
Q ss_pred C--CCCCCCCccHHHHHHHHHHhhh----hhhhhhcc
Q 043986 160 D--HPILYRPVTWREYLDAKATHFN----KAIELIRY 190 (195)
Q Consensus 160 ~--~~~~y~~~~~~ey~~~~~~~~~----~~l~~~~~ 190 (195)
+ +|++|+|++++||+..+..+.. ..|+.+++
T Consensus 272 ~~~~p~~y~p~~~~e~l~~~~~~~~~~~~~~~~~~~~ 308 (321)
T PLN02299 272 EAEEEQVYPKFVFEDYMKLYAGLKFQAKEPRFEAMKA 308 (321)
T ss_pred ccCCCcCCCCCcHHHHHHHHHHcccCCccchhhhhhc
Confidence 5 5799999999999998875532 36788777
No 16
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=1.7e-52 Score=358.49 Aligned_cols=179 Identities=34% Similarity=0.574 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCc-hhhhhhcCcCCCCCCcceeEEeecCCCCCC--CCCcccccccCCCCeeEE
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQ-EDIAWFKPKYGCKSPQGVLQLNSYPVCPDP--NRAMGLAPHTDSSLLTSL 77 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~-~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~--~~~~g~~~HtD~~~lTlL 77 (195)
+++++|+++|.+++.+|++++|++||+++ ++|+.+.. .....+.+|++|||+++.. +..+|+++|||+|+||||
T Consensus 135 ~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~---~~~~~~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL 211 (335)
T PLN02156 135 EAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVK---VKESDSCLRMNHYPEKEETPEKVEIGFGEHTDPQLISLL 211 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhc---CCCccceEeEEeCCCCCCCccccccCCCCccCCCceEEE
Confidence 36899999999999999999999999974 66755421 1344578999999999753 257899999999999999
Q ss_pred eecCCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCcc
Q 043986 78 YQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLT 157 (195)
Q Consensus 78 ~q~~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~ 157 (195)
+||+++||||+..+|+|++|+|.||++|||+||+||+||||+|||+.|||+.+..++|||++||+.|+.|++|+|+++++
T Consensus 212 ~Qd~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~~wTNg~~kSt~HRVv~~~~~~R~SiafF~~P~~d~~i~pl~~~v 291 (335)
T PLN02156 212 RSNDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLV 291 (335)
T ss_pred EeCCCCceEEEeCCCCEEEccCCCCcEEEEhHHHHHHHhCCeeeccceeeecCCCCCEEEEEEeecCCCCCEEeCChHhc
Confidence 99999999999777799999999999999999999999999999999999988888999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHHHHhhh
Q 043986 158 DHDHPILYRPVTWREYLDAKATHFN 182 (195)
Q Consensus 158 ~~~~~~~y~~~~~~ey~~~~~~~~~ 182 (195)
++++|++|++++|+||+..+.....
T Consensus 292 ~~~~p~~y~p~~~~ey~~~~~~~~~ 316 (335)
T PLN02156 292 PKQDDCLYNEFTWSQYKLSAYKTKL 316 (335)
T ss_pred CCCCCccCCCccHHHHHHHHHhccC
Confidence 9999999999999999998875543
No 17
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=8.3e-53 Score=364.08 Aligned_cols=188 Identities=32% Similarity=0.540 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+|+++||++|||++++|+..... .....+.+|++|||+++.++..+|+++|||+|+||||+|+
T Consensus 168 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~--~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd 245 (360)
T PLN03178 168 PATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKEVGG--LEELLLQMKINYYPRCPQPDLALGVEAHTDVSALTFILHN 245 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC--cccchhhhheeccCCCCCCccccCcCCccCCCceEEEeeC
Confidence 36899999999999999999999999999988654221 1244578999999999988889999999999999999999
Q ss_pred CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCce-EecCcCccCC
Q 043986 81 NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVK-ISPSVKLTDH 159 (195)
Q Consensus 81 ~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~-i~pl~~~~~~ 159 (195)
.++||||+.+ |+|++|+|.||++|||+||+||+||||+|||++|||+.++.++|||++||++|+.|+. +.|+++++++
T Consensus 246 ~v~GLQV~~~-g~Wi~V~p~pg~lvVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~P~~d~~v~~pl~~~v~~ 324 (360)
T PLN03178 246 MVPGLQVLYE-GKWVTAKCVPDSIVVHIGDTLEILSNGRYKSILHRGLVNKEKVRISWAVFCEPPKEKIILKPLPELVSK 324 (360)
T ss_pred CCCceeEeEC-CEEEEcCCCCCeEEEEccHHHHHHhCCccccccceeecCCCCCeEEEEEEecCCcccccccCcHHHcCC
Confidence 9999999975 5899999999999999999999999999999999999888888999999999999975 5999999998
Q ss_pred CCCCCCCCccHHHHHHHHHHhh---hhhhhhhccC
Q 043986 160 DHPILYRPVTWREYLDAKATHF---NKAIELIRYD 191 (195)
Q Consensus 160 ~~~~~y~~~~~~ey~~~~~~~~---~~~l~~~~~~ 191 (195)
++|++|++++|+||+..+.... ...|+..||.
T Consensus 325 ~~p~~y~p~~~~eyl~~~~~~~~~~~~~~~~~~~~ 359 (360)
T PLN03178 325 EEPPKFPPRTFGQHVSHKLFKKPQDERNIDAADIS 359 (360)
T ss_pred CCcccCCCccHHHHHHHHHhcccCcchhHhHHhcc
Confidence 8999999999999999887654 2377777773
No 18
>PLN02704 flavonol synthase
Probab=100.00 E-value=1.3e-52 Score=359.76 Aligned_cols=176 Identities=34% Similarity=0.635 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+|+++++++||+++++|+.... .....+.+|++||||+++++..+|+++|||+|+||||+|+
T Consensus 157 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~---~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd 233 (335)
T PLN02704 157 EVNEEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVG---GEELEYLLKINYYPPCPRPDLALGVVAHTDMSAITILVPN 233 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc---CCchhhhhhhhcCCCCCCcccccCccCccCCcceEEEecC
Confidence 3689999999999999999999999999988854321 1223468999999999988889999999999999999999
Q ss_pred CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCCC
Q 043986 81 NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHD 160 (195)
Q Consensus 81 ~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~ 160 (195)
.++||||+. +|+|++|+|.||++|||+||+||+||||+|||++|||+.++.++|||++||++|+.|+.|.|++++++++
T Consensus 234 ~v~GLQV~~-~g~Wi~V~p~pg~lvVNvGD~L~~~TNg~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~ 312 (335)
T PLN02704 234 EVQGLQVFR-DDHWFDVKYIPNALVIHIGDQIEILSNGKYKSVLHRTTVNKEKTRMSWPVFLEPPSELAVGPLPKLINED 312 (335)
T ss_pred CCCceeEeE-CCEEEeCCCCCCeEEEEechHHHHHhCCeeecccceeecCCCCCeEEEEEEecCCCCceEeCChHhcCCC
Confidence 999999986 4589999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHHh
Q 043986 161 HPILYRPVTWREYLDAKATH 180 (195)
Q Consensus 161 ~~~~y~~~~~~ey~~~~~~~ 180 (195)
+|++|++++++||+..+.+.
T Consensus 313 ~p~~Y~~~~~~e~~~~~~~~ 332 (335)
T PLN02704 313 NPPKFKTKKFKDYVYCKLNK 332 (335)
T ss_pred CCccCCCCCHHHHHHHHHhc
Confidence 99999999999999888753
No 19
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=6.7e-52 Score=353.56 Aligned_cols=176 Identities=27% Similarity=0.452 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCC-CCCcccccccCCCCeeEEee
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDP-NRAMGLAPHTDSSLLTSLYQ 79 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~-~~~~g~~~HtD~~~lTlL~q 79 (195)
+++++|+++|.+++..|++++|++|||++++|... +..+.+.+|++||||++.+ +..+|+++|||+|+||+|+|
T Consensus 137 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~-----~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q 211 (320)
T PTZ00273 137 ELMETHYRDMQALALVLLRALALAIGLREDFFDSK-----FMEPLSVFRMKHYPALPQTKKGRTVCGEHTDYGIITLLYQ 211 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHh-----hCCCcceeeeeecCCCCCccccCcccccccCCCeEEEEec
Confidence 36899999999999999999999999999988543 3446688999999999863 46889999999999999999
Q ss_pred cCCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCC
Q 043986 80 GNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDH 159 (195)
Q Consensus 80 ~~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~ 159 (195)
|.++||||++.+|+|++|+|.||++|||+||+|++||||+|||++|||+.+ ..+|||++||++|+.|++|.|+++++++
T Consensus 212 d~~~GLqV~~~~g~Wi~V~p~pg~lvVNvGD~l~~~TnG~~kSt~HRVv~~-~~~R~Si~~F~~p~~d~~i~pl~~~~~~ 290 (320)
T PTZ00273 212 DSVGGLQVRNLSGEWMDVPPLEGSFVVNIGDMMEMWSNGRYRSTPHRVVNT-GVERYSMPFFCEPNPNVIIKCLDNCHSE 290 (320)
T ss_pred CCCCceEEECCCCCEEeCCCCCCeEEEEHHHHHHHHHCCeeeCCCccccCC-CCCeEEEEEEEcCCCCceEecCccccCC
Confidence 999999999888899999999999999999999999999999999999854 5789999999999999999999999999
Q ss_pred CCCCCCCCccHHHHHHHHHHhhh
Q 043986 160 DHPILYRPVTWREYLDAKATHFN 182 (195)
Q Consensus 160 ~~~~~y~~~~~~ey~~~~~~~~~ 182 (195)
++|++|++++++||+..++....
T Consensus 291 ~~~~~y~~~~~~e~~~~~~~~~~ 313 (320)
T PTZ00273 291 ENPPKYPPVRAVDWLLKRFAETY 313 (320)
T ss_pred CCcccCCceeHHHHHHHHHHHHH
Confidence 89999999999999998876543
No 20
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=6.9e-52 Score=358.53 Aligned_cols=187 Identities=34% Similarity=0.617 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+||+++|++||+++++|+..... ...+.+.+|++|||++++++..+|+++|||+|+||||+|+
T Consensus 170 ~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~--~~~~~~~lRl~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~ 247 (362)
T PLN02393 170 ELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGG--EDGVGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILLPD 247 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCC--CccccceeeeeecCCCCCcccccccccccCCceEEEEeeC
Confidence 36899999999999999999999999999988554221 1123478999999999988889999999999999999985
Q ss_pred -CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCC
Q 043986 81 -NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDH 159 (195)
Q Consensus 81 -~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~ 159 (195)
+++||||+. +|+|++|+|.||++|||+||+|++||||+|||++|||+.++.++|||++||++|+.|++|.|+++++++
T Consensus 248 ~~v~GLQV~~-~g~W~~V~p~pgalVVNiGD~l~~~Tng~~kSt~HRVv~~~~~~R~SiafF~~P~~d~~i~pl~~~v~~ 326 (362)
T PLN02393 248 DNVAGLQVRR-DDAWITVKPVPDAFIVNIGDQIQVLSNAIYKSVEHRVIVNSAKERVSLAFFYNPKSDLPIEPLKELVTP 326 (362)
T ss_pred CCCCcceeeE-CCEEEECCCCCCeEEEEcchhhHhhcCCeeeccceecccCCCCCEEEEEEEecCCCCceEeCcHHhcCC
Confidence 699999995 568999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred CCCCCCCCccHHHHHHHHHHhh---hhhhhhhcc
Q 043986 160 DHPILYRPVTWREYLDAKATHF---NKAIELIRY 190 (195)
Q Consensus 160 ~~~~~y~~~~~~ey~~~~~~~~---~~~l~~~~~ 190 (195)
++|++|++++|+||+..+..+. .+.++.+|+
T Consensus 327 ~~p~~y~~~~~~ey~~~~~~~~~~~~~~~~~~~~ 360 (362)
T PLN02393 327 DRPALYPPMTFDEYRLFIRTKGPRGKSQVESLKS 360 (362)
T ss_pred CCCCCCCCccHHHHHHHHHhcccCcchHHhhhcc
Confidence 8999999999999998776554 235666654
No 21
>PLN02485 oxidoreductase
Probab=100.00 E-value=1.4e-51 Score=352.84 Aligned_cols=177 Identities=28% Similarity=0.448 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCC----CCCCcccccccCCCCeeE
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPD----PNRAMGLAPHTDSSLLTS 76 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~----~~~~~g~~~HtD~~~lTl 76 (195)
+++++|+++|.+++.+|++++|++|||++++|.... ...+.+.+|++||||++. ++..+|+++|||+|+|||
T Consensus 143 ~~~~~y~~~~~~l~~~ll~~~a~~Lgl~~~~f~~~~----~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTl 218 (329)
T PLN02485 143 ALMEEYIKLCTDLSRKILRGIALALGGSPDEFEGKM----AGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTL 218 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhhhh----ccCccceEEEEeCCCCccccCCcccCcccccccCCCeEEE
Confidence 368999999999999999999999999998774321 234567899999999875 446899999999999999
Q ss_pred Eeec-CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcC
Q 043986 77 LYQG-NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVK 155 (195)
Q Consensus 77 L~q~-~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~ 155 (195)
|+|+ .++||||++.+|+|++|+|.||++|||+||+|++||||+|+|++|||+.+++.+|||++||++|+.|++|+|+++
T Consensus 219 L~qd~~~~GLqV~~~~g~Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~ 298 (329)
T PLN02485 219 VNQDDDITALQVRNLSGEWIWAIPIPGTFVCNIGDMLKIWSNGVYQSTLHRVINNSPKYRVCVAFFYETNFDAAVEPLDI 298 (329)
T ss_pred EeccCCCCeeeEEcCCCcEEECCCCCCcEEEEhHHHHHHHHCCEeeCCCceecCCCCCCeEEEEEEecCCCCceeecchh
Confidence 9997 589999998888999999999999999999999999999999999999888889999999999999999999999
Q ss_pred ccC--CCCCCCCCCccHHHHHHHHHHhh
Q 043986 156 LTD--HDHPILYRPVTWREYLDAKATHF 181 (195)
Q Consensus 156 ~~~--~~~~~~y~~~~~~ey~~~~~~~~ 181 (195)
+++ .++|++|++++|+||+..++...
T Consensus 299 ~~~~~~~~~~~y~~~t~~e~~~~~~~~~ 326 (329)
T PLN02485 299 CKEKRTGGSQVFKRVVYGEHLVNKVLTN 326 (329)
T ss_pred hcccccCCCCCCCcEeHHHHHHHHHHHh
Confidence 987 66789999999999999887543
No 22
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.9e-50 Score=347.86 Aligned_cols=171 Identities=32% Similarity=0.496 Sum_probs=153.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++.+|++++|++|||++++|..... ....+.+|++||||++.++..+|+++|||+|+||||+|+
T Consensus 162 ~~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~~----~~~~~~lRl~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd 237 (348)
T PLN00417 162 ETLHEYTMKQRLVIEKFFKAMARSLELEENCFLEMYG----ENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPD 237 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc----cCccceeeeeecCCCCCcccccCCcCccCCCceEEEEec
Confidence 3689999999999999999999999999988854421 223457999999999988888999999999999999996
Q ss_pred -CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCC
Q 043986 81 -NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDH 159 (195)
Q Consensus 81 -~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~ 159 (195)
+++||||+. +|+|++|+|.||++|||+||+||+||||+|+|++|||+.++..+|||++||++|+.|++|+|+++++++
T Consensus 238 ~~v~GLQV~~-~g~Wi~V~p~pg~lVVNiGD~Le~~Tng~~kSt~HRVv~~~~~~R~Si~fF~~P~~d~~i~pl~~~v~~ 316 (348)
T PLN00417 238 KDVEGLQFLK-DGKWYKAPIVPDTILINVGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCIPGADKEIQPVDGLVSE 316 (348)
T ss_pred CCCCceeEeE-CCeEEECCCCCCcEEEEcChHHHHHhCCeecccceEEecCCCCCEEEEEEEecCCCCceecCchHhcCC
Confidence 699999985 469999999999999999999999999999999999998888899999999999999999999999998
Q ss_pred CCCCCCCCccHHHHHHH
Q 043986 160 DHPILYRPVTWREYLDA 176 (195)
Q Consensus 160 ~~~~~y~~~~~~ey~~~ 176 (195)
++|++|++++.+++...
T Consensus 317 ~~p~~Y~~~~~~~~~~~ 333 (348)
T PLN00417 317 ARPRLYKTVKKYVELFF 333 (348)
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 89999999995443333
No 23
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.8e-50 Score=345.56 Aligned_cols=176 Identities=29% Similarity=0.543 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCC--chhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEe
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLT--QEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLY 78 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~--~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~ 78 (195)
+++++|+++|.+++..|+++||++||++ +++|... +..+.+.+|++||||++.++..+|+++|||+|+||||+
T Consensus 158 ~~~~~y~~~~~~La~~ll~~lA~~Lgl~~~~~~f~~~-----~~~~~~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~ 232 (341)
T PLN02984 158 VLMEEYGKHLTRIAVTLFEAIAKTLSLELSGDQKMSY-----LSESTGVIRVYRYPQCSNEAEAPGMEVHTDSSVISILN 232 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHH-----hcCccceEEEEeCCCCCCcccccCccCccCCCceEEEE
Confidence 3689999999999999999999999999 8887443 24556799999999998877789999999999999999
Q ss_pred ecCCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCcccccccccc-CCCCCcceeEEEeeCCCCCceEecCcCcc
Q 043986 79 QGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRAL-VNNTRHRISTAYFYGPPQDVKISPSVKLT 157 (195)
Q Consensus 79 q~~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv-~~~~~~R~S~~~F~~p~~d~~i~pl~~~~ 157 (195)
|++++||||+. +|+|++|+|.||++|||+||+||+||||+|||+.|||+ .++.++|||++||++|+.|++|.|
T Consensus 233 Qd~v~GLQV~~-~g~Wv~V~p~pgalVVNiGD~Le~wTNg~~kSt~HRVv~~~~~~~R~Sia~F~~P~~d~~i~p----- 306 (341)
T PLN02984 233 QDEVGGLEVMK-DGEWFNVKPIANTLVVNLGDMMQVISDDEYKSVLHRVGKRNKKKERYSICYFVFPEEDCVIKS----- 306 (341)
T ss_pred eCCCCCeeEee-CCceEECCCCCCeEEEECChhhhhhcCCeeeCCCCccccCCCCCCeEEEEEEecCCCCCEEcc-----
Confidence 99999999986 46999999999999999999999999999999999996 455678999999999999999963
Q ss_pred CCCCCCCCCCccHHHHHHHHHHhhh---hh--hhhhccCC
Q 043986 158 DHDHPILYRPVTWREYLDAKATHFN---KA--IELIRYDA 192 (195)
Q Consensus 158 ~~~~~~~y~~~~~~ey~~~~~~~~~---~~--l~~~~~~~ 192 (195)
++|++++++||+..+..... +. |+.+|+++
T Consensus 307 -----~~y~p~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~ 341 (341)
T PLN02984 307 -----SKYKPFTYSDFEAQVQLDVKTLGSKVGLSRFKSNP 341 (341)
T ss_pred -----CCcCcccHHHHHHHHHhhhhccCCcccccceecCC
Confidence 68999999999998875543 23 88888874
No 24
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=3.8e-50 Score=342.27 Aligned_cols=177 Identities=43% Similarity=0.737 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
++|++|.+++.+++..|+++++++||++.+++..... ......+|+|||||||+++..+|+++|||.++||+|+||
T Consensus 135 e~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~----~~~~~~~r~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd 210 (322)
T KOG0143|consen 135 ETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFG----ETGGQVMRLNYYPPCPEPELTLGLGAHTDKSFLTILLQD 210 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhC----CccceEEEEeecCCCcCccccccccCccCcCceEEEEcc
Confidence 4799999999999999999999999998755533321 125679999999999999999999999999999999998
Q ss_pred -CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCC
Q 043986 81 -NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDH 159 (195)
Q Consensus 81 -~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~ 159 (195)
.++||||.+.+|+|++|+|.||++|||+||+||+||||+|||+.|||++++.++|+|+|||+.|..|.+|.|+++++++
T Consensus 211 ~~V~GLQv~~~dg~Wi~V~P~p~a~vVNiGD~l~~lSNG~ykSv~HRV~~n~~~~R~Sia~F~~p~~d~~i~p~~elv~~ 290 (322)
T KOG0143|consen 211 DDVGGLQVFTKDGKWIDVPPIPGAFVVNIGDMLQILSNGRYKSVLHRVVVNGEKERISVAFFVFPPLDKVIGPPEELVDE 290 (322)
T ss_pred CCcCceEEEecCCeEEECCCCCCCEEEEcccHHhHhhCCcccceEEEEEeCCCCceEEEEEEecCCCCceecChhhhCCC
Confidence 8999999974569999999999999999999999999999999999999998889999999999999999999999887
Q ss_pred CCCCCCCCccHHHHHHHHHHhhh
Q 043986 160 DHPILYRPVTWREYLDAKATHFN 182 (195)
Q Consensus 160 ~~~~~y~~~~~~ey~~~~~~~~~ 182 (195)
. |++|+++++.+|++.+.....
T Consensus 291 ~-~~~Y~~~~~~~y~~~~~~~~~ 312 (322)
T KOG0143|consen 291 E-PPKYKPFTFGDYLEFYFSKKL 312 (322)
T ss_pred C-CCccCcEEHHHHHHHHHhccc
Confidence 7 888999999999998876543
No 25
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=6.5e-49 Score=332.46 Aligned_cols=182 Identities=35% Similarity=0.561 Sum_probs=156.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986 1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG 80 (195)
Q Consensus 1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 80 (195)
+++++|+++|.+++..|+++++++|||++++|+..... .......+|++|||+++.++...|+++|||+|+||+|+|+
T Consensus 110 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~--~~~~~~~lrl~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~ 187 (303)
T PLN02403 110 KTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSG--NKGPSVGTKVAKYPECPRPELVRGLREHTDAGGIILLLQD 187 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc--CCCccceeeeEcCCCCCCcccccCccCccCCCeEEEEEec
Confidence 46899999999999999999999999999888543210 1133457999999999887778899999999999999997
Q ss_pred -CCCceeEEeCCCceEEeccCC-CcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccC
Q 043986 81 -NTSGLQVYRDNVGWVPVHPVS-GALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTD 158 (195)
Q Consensus 81 -~~~GLqv~~~~g~W~~v~~~~-g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~ 158 (195)
.++||||+. +|+|++|+|.| |++|||+||+|++||||+|||+.|||+.++.++|||++||+.|+.|++|.|+++++
T Consensus 188 ~~v~GLqV~~-~g~Wi~V~p~p~~~lvVNvGD~L~~~Tng~~~S~~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~~- 265 (303)
T PLN02403 188 DQVPGLEFLK-DGKWVPIPPSKNNTIFVNTGDQLEVLSNGRYKSTLHRVMADKNGSRLSIATFYNPAGDAIISPAPKLL- 265 (303)
T ss_pred CCCCceEecc-CCeEEECCCCCCCEEEEEehHHHHHHhCCeeecccceeecCCCCCEEEEEEEEcCCCCCeEeCchhhC-
Confidence 499999975 56999999999 69999999999999999999999999988888999999999999999999999875
Q ss_pred CCCCCCCC-CccHHHHHHHHHHhh----hhhhhhhccCC
Q 043986 159 HDHPILYR-PVTWREYLDAKATHF----NKAIELIRYDA 192 (195)
Q Consensus 159 ~~~~~~y~-~~~~~ey~~~~~~~~----~~~l~~~~~~~ 192 (195)
|+ +++|+||++.+.... ...|+.+++.+
T Consensus 266 ------~~~~~~~~eyl~~~~~~~~~~~~~~~~~~~~~~ 298 (303)
T PLN02403 266 ------YPSNYRFQDYLKLYSTTKFGDKGPRFESMKKMA 298 (303)
T ss_pred ------CCCCccHHHHHHHHHHhccccccchHHHhhhhh
Confidence 33 499999999876422 23588888865
No 26
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=3.2e-47 Score=315.23 Aligned_cols=162 Identities=30% Similarity=0.491 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeecC
Q 043986 2 VMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQGN 81 (195)
Q Consensus 2 ~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~~ 81 (195)
++..|+++|.+++.+||++||.+|+|++++|+.. +.++.+++|+++||+.+..+...|.++|+|+|+||||+||+
T Consensus 135 ~ll~~~~~~~~~~~rLL~aiA~~LdL~~d~Fd~~-----~~d~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~lTLl~Qd~ 209 (322)
T COG3491 135 ALLQYYRAMTAVGLRLLRAIALGLDLPEDFFDKR-----TSDPNSVLRLLRYPSRPAREGADGVGAHTDYGLLTLLFQDD 209 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhc-----cCCchheEEEEecCCCcccccccccccccCCCeEEEEEecc
Confidence 5789999999999999999999999999998655 47889999999999999888888999999999999999999
Q ss_pred CCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCc-CccCCC
Q 043986 82 TSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSV-KLTDHD 160 (195)
Q Consensus 82 ~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~-~~~~~~ 160 (195)
++||||.++.|+|++|+|.||++|||+||+||+||||+|+||+|||+.+++.+||||+||+.|+.|+.|.|+. .+.+..
T Consensus 210 ~~GLqv~~~~g~Wl~v~P~pgtlvVNiGdmLe~~Tng~lrST~HRV~~~~~~~R~SipfF~~p~~Da~I~Pl~~l~~~~a 289 (322)
T COG3491 210 VGGLEVRPPNGGWLDVPPIPGTLVVNIGDMLERWTNGRLRSTVHRVRNPPGVDRYSIPFFLEPNFDAEIAPLLPLCPEAA 289 (322)
T ss_pred cCCeEEecCCCCeeECCCCCCeEEEeHHHHHHHHhCCeeccccceeecCCCccceeeeeeccCCCCccccccCCCCcccc
Confidence 9999999998899999999999999999999999999999999999999989999999999999999999866 444455
Q ss_pred CCCCCCCc
Q 043986 161 HPILYRPV 168 (195)
Q Consensus 161 ~~~~y~~~ 168 (195)
.++++..-
T Consensus 290 ~~~~~~~t 297 (322)
T COG3491 290 NEPRGPGT 297 (322)
T ss_pred cCCcCCCC
Confidence 56666654
No 27
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.94 E-value=2.3e-27 Score=169.10 Aligned_cols=95 Identities=42% Similarity=0.783 Sum_probs=76.4
Q ss_pred ceeEEeecCCCCCCCCCcccccccCC--CCeeEEeecCCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccc
Q 043986 46 GVLQLNSYPVCPDPNRAMGLAPHTDS--SLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSA 123 (195)
Q Consensus 46 ~~lrl~~Yp~~~~~~~~~g~~~HtD~--~~lTlL~q~~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~ 123 (195)
+.+|+++||+ ++...|+++|+|. +++|+|+|++.+|||+.+.+ +|+.|++.++.++||+||+|++||||.++|+
T Consensus 2 ~~~~~~~Y~~---~~~~~~~~~H~D~~~~~~Til~~~~~~gL~~~~~~-~~~~v~~~~~~~~v~~G~~l~~~t~g~~~~~ 77 (98)
T PF03171_consen 2 SQLRLNRYPP---PENGVGIGPHTDDEDGLLTILFQDEVGGLQVRDDG-EWVDVPPPPGGFIVNFGDALEILTNGRYPAT 77 (98)
T ss_dssp -EEEEEEE-S---CCGCEEEEEEEES--SSEEEEEETSTS-EEEEETT-EEEE----TTCEEEEEBHHHHHHTTTSS---
T ss_pred CEEEEEECCC---cccCCceeCCCcCCCCeEEEEecccchheeccccc-cccCccCccceeeeeceeeeecccCCccCCc
Confidence 4689999999 5668899999999 99999999999999999988 8999999999999999999999999999999
Q ss_pred cccccCCCCCcceeEEEeeCC
Q 043986 124 LHRALVNNTRHRISTAYFYGP 144 (195)
Q Consensus 124 ~HRVv~~~~~~R~S~~~F~~p 144 (195)
.|||+.+....|+|++||++|
T Consensus 78 ~HrV~~~~~~~R~s~~~f~~p 98 (98)
T PF03171_consen 78 LHRVVPPTEGERYSLTFFLRP 98 (98)
T ss_dssp -EEEE--STS-EEEEEEEEE-
T ss_pred eeeeEcCCCCCEEEEEEEECC
Confidence 999999888899999999987
No 28
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=97.10 E-value=0.00035 Score=49.20 Aligned_cols=79 Identities=28% Similarity=0.405 Sum_probs=53.5
Q ss_pred eEEeecCCCCCCCCCcccccccCC-----CCeeEEee--cC-----CCceeEEeC---CCceEEec-----cCCCcEEEe
Q 043986 48 LQLNSYPVCPDPNRAMGLAPHTDS-----SLLTSLYQ--GN-----TSGLQVYRD---NVGWVPVH-----PVSGALVVI 107 (195)
Q Consensus 48 lrl~~Yp~~~~~~~~~g~~~HtD~-----~~lTlL~q--~~-----~~GLqv~~~---~g~W~~v~-----~~~g~~vVn 107 (195)
+++++|++ .-.+.+|+|. ..+|+|+. +. .+.|++.+. ++....++ |.+|.+|+.
T Consensus 1 ~~~~~y~~------G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F 74 (100)
T PF13640_consen 1 MQLNRYPP------GGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIF 74 (100)
T ss_dssp -EEEEEET------TEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEE
T ss_pred CEEEEECc------CCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEE
Confidence 46777755 3357899998 57888854 22 255777752 34566666 999988885
Q ss_pred cccchhhccCCccccccccccCC-CCCcceeEEEeeC
Q 043986 108 VGDLMQITCNGRFKSALHRALVN-NTRHRISTAYFYG 143 (195)
Q Consensus 108 vGd~l~~~TnG~~~s~~HRVv~~-~~~~R~S~~~F~~ 143 (195)
-+ ..++|+|... ....|+++.+|++
T Consensus 75 ~~-----------~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 75 PS-----------DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp ES-----------CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred eC-----------CCCeecCcccCCCCCEEEEEEEEC
Confidence 44 4578999877 6778999999873
No 29
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=96.11 E-value=0.11 Score=40.19 Aligned_cols=107 Identities=19% Similarity=0.123 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCC--------CeeEEee--c-
Q 043986 12 GLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSS--------LLTSLYQ--G- 80 (195)
Q Consensus 12 ~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~--------~lTlL~q--~- 80 (195)
.+...|.+.++..++++... ......+++.+|.+. ....+|.|.. .+|+++. +
T Consensus 59 ~~~~~l~~~i~~~~~~~~~~----------~~~~~~~~~~~Y~~g------~~~~~H~D~~~~~~~~~r~~T~~~yLn~~ 122 (178)
T smart00702 59 LVIERIRQRLADFLGLLRGL----------PLSAEDAQVARYGPG------GHYGPHVDNFEDDENGDRIATFLLYLNDV 122 (178)
T ss_pred HHHHHHHHHHHHHHCCCchh----------hccCcceEEEEECCC------CcccCcCCCCCCCCCCCeEEEEEEEeccC
Confidence 56677788888888875321 122356788999772 2367899866 5888765 2
Q ss_pred -CCCceeEEeCCC-ceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeC
Q 043986 81 -NTSGLQVYRDNV-GWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYG 143 (195)
Q Consensus 81 -~~~GLqv~~~~g-~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~ 143 (195)
..+.|.+...+. ....|.|..|.+|+.-.. .+.+.|.|.......|+++..+++
T Consensus 123 ~~GG~~~f~~~~~~~~~~v~P~~G~~v~f~~~---------~~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 123 EEGGELVFPGLGLMVCATVKPKKGDLLFFPSG---------RGRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CcCceEEecCCCCccceEEeCCCCcEEEEeCC---------CCCccccCCcceeCCEEEEEEEEC
Confidence 233466655441 356899999988884421 016789998776678999988764
No 30
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=95.64 E-value=0.14 Score=41.89 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=36.4
Q ss_pred CCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeC
Q 043986 82 TSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYG 143 (195)
Q Consensus 82 ~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~ 143 (195)
.+.|.+.+..|. ..|+|..|.+|+.-. +.+|+|.......||++.+...
T Consensus 129 GGEl~~~~~~g~-~~Vkp~aG~~vlfps------------~~lH~v~pVt~G~R~~~~~Wi~ 177 (226)
T PRK05467 129 GGELVIEDTYGE-HRVKLPAGDLVLYPS------------TSLHRVTPVTRGVRVASFFWIQ 177 (226)
T ss_pred CCceEEecCCCc-EEEecCCCeEEEECC------------CCceeeeeccCccEEEEEecHH
Confidence 445888766543 678888888888653 4789998777788999887653
No 31
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=95.20 E-value=0.076 Score=41.54 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=47.8
Q ss_pred CcccccccCC----CCeeEEeec----CCCceeEEeC---CCceEEeccCCCcEEEecccchhhccCCccccccccccCC
Q 043986 62 AMGLAPHTDS----SLLTSLYQG----NTSGLQVYRD---NVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVN 130 (195)
Q Consensus 62 ~~g~~~HtD~----~~lTlL~q~----~~~GLqv~~~---~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~ 130 (195)
......|.|. ..+|+++.- ..+|+-++.. +..=+.+.+.+|++++..|..+ .|-|...
T Consensus 84 nr~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~~~~-----------~Hgvtpv 152 (171)
T PF12851_consen 84 NRCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCAKRE-----------LHGVTPV 152 (171)
T ss_pred ecCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEcccce-----------eeecCcc
Confidence 3456889999 778888752 3456666554 1113788899999999888543 3444432
Q ss_pred C-----CCcceeEEEeeC
Q 043986 131 N-----TRHRISTAYFYG 143 (195)
Q Consensus 131 ~-----~~~R~S~~~F~~ 143 (195)
. ..+|+|++||++
T Consensus 153 ~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 153 ESPNRNHGTRISLVFYQH 170 (171)
T ss_pred cCCCCCCCeEEEEEEEeE
Confidence 2 368999999985
No 32
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=91.07 E-value=1.4 Score=34.37 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=44.0
Q ss_pred ceeEEeecCCCCCCCCCcccccccCCCCe---eEEeec--CCC-ceeEEeC--CCceEEeccCCCcEEEecccchhhccC
Q 043986 46 GVLQLNSYPVCPDPNRAMGLAPHTDSSLL---TSLYQG--NTS-GLQVYRD--NVGWVPVHPVSGALVVIVGDLMQITCN 117 (195)
Q Consensus 46 ~~lrl~~Yp~~~~~~~~~g~~~HtD~~~l---TlL~q~--~~~-GLqv~~~--~g~W~~v~~~~g~~vVnvGd~l~~~Tn 117 (195)
..+-+|+|++ +. ++++|.|...+ ..+..= +.. -+.+... .+..+.+...+|+++|+-|++=..| .
T Consensus 97 n~~liN~Y~~-----g~-~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~r~~~-H 169 (194)
T PF13532_consen 97 NQCLINYYRD-----GS-GIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEARYDW-H 169 (194)
T ss_dssp SEEEEEEESS-----TT--EEEE---TTC-CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE-TTEEEEEETTHHHHE-E
T ss_pred CEEEEEecCC-----CC-CcCCCCCcccccCCCcEEEEEEccCceEEEeeccCCCccEEEEcCCCCEEEeChHHhhhe-e
Confidence 4677899976 23 79999998733 222210 111 1333332 3579999999999999999875555 4
Q ss_pred CccccccccccC--CCCCcceeEEE
Q 043986 118 GRFKSALHRALV--NNTRHRISTAY 140 (195)
Q Consensus 118 G~~~s~~HRVv~--~~~~~R~S~~~ 140 (195)
|.-+... .... .....|+||.|
T Consensus 170 ~I~~~~~-~~~~~~~~~~~RislTf 193 (194)
T PF13532_consen 170 GIPPVKK-DTHPSHYVRGRRISLTF 193 (194)
T ss_dssp EE-S-SC-EEEESTEE-S-EEEEEE
T ss_pred EcccccC-CccccccCCCCEEEEEe
Confidence 4322111 0000 01236999987
No 33
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=89.22 E-value=5 Score=32.19 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=29.5
Q ss_pred ceEEeccCCCcEEEecccchhhccCCccccccccccCCCC-CcceeEEEee
Q 043986 93 GWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNT-RHRISTAYFY 142 (195)
Q Consensus 93 ~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~-~~R~S~~~F~ 142 (195)
.|+.+.|.+|.+|+.=. .-.|+|....+ .+|+|++|=+
T Consensus 160 ~~~~v~P~~G~lvlFPS------------~L~H~v~p~~~~~~RISiSFNl 198 (201)
T TIGR02466 160 RFVYVPPQEGRVLLFES------------WLRHEVPPNESEEERISVSFNY 198 (201)
T ss_pred ccEEECCCCCeEEEECC------------CCceecCCCCCCCCEEEEEEee
Confidence 58899999999998443 24689987764 6899999843
No 34
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=83.00 E-value=23 Score=28.68 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=46.3
Q ss_pred eeEEeecCCCCCCCCCcccccccCCCCe---eEEe--ecCCCc-eeEE--eCCCceEEeccCCCcEEEecccchhhccCC
Q 043986 47 VLQLNSYPVCPDPNRAMGLAPHTDSSLL---TSLY--QGNTSG-LQVY--RDNVGWVPVHPVSGALVVIVGDLMQITCNG 118 (195)
Q Consensus 47 ~lrl~~Yp~~~~~~~~~g~~~HtD~~~l---TlL~--q~~~~G-Lqv~--~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG 118 (195)
.+-+|+|.+- . +++.|.|-.-. ..+. .=+.+. +.+. +.++.+..+.-.+|+++|+-|++ +.|
T Consensus 117 a~LvN~Y~~G-----~-~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~s-r~~--- 186 (213)
T PRK15401 117 ACLINRYAPG-----A-KLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPS-RLR--- 186 (213)
T ss_pred EEEEEeccCc-----C-ccccccCCCcccCCCCEEEEeCCCCeEEEecccCCCCceEEEEeCCCCEEEECchH-hhe---
Confidence 4678999762 2 78899994210 0111 011121 1221 23346899999999999999985 332
Q ss_pred ccccccccccCCC-------CCcceeEEEe
Q 043986 119 RFKSALHRALVNN-------TRHRISTAYF 141 (195)
Q Consensus 119 ~~~s~~HRVv~~~-------~~~R~S~~~F 141 (195)
.|.|.... +..|+|+.|-
T Consensus 187 -----~HgVp~~~~~~~p~~g~~RINLTFR 211 (213)
T PRK15401 187 -----YHGILPLKAGEHPLTGECRINLTFR 211 (213)
T ss_pred -----eccCCcCCCCcCCCCCCCeEEEEeE
Confidence 34442211 2369999883
No 35
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=77.45 E-value=3.3 Score=29.00 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=22.5
Q ss_pred ceEEeccCCCcEEEecccchhhccCCccccccccccCCCC-CcceeEEE
Q 043986 93 GWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNT-RHRISTAY 140 (195)
Q Consensus 93 ~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~-~~R~S~~~ 140 (195)
.+..++|.+|.+||.=+. ..|+|....+ .+|+||+|
T Consensus 64 ~~~~~~p~~G~lvlFPs~------------l~H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 64 PYYIVEPEEGDLVLFPSW------------LWHGVPPNNSDEERISISF 100 (101)
T ss_dssp SEEEE---TTEEEEEETT------------SEEEE----SSS-EEEEEE
T ss_pred ceEEeCCCCCEEEEeCCC------------CEEeccCcCCCCCEEEEEc
Confidence 688899999999996653 4688876654 58999997
No 36
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=71.18 E-value=19 Score=27.97 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=35.7
Q ss_pred ceeEEeecCCCCCCCCCcccccccCCCCee---EEee--cCCCceeEE---eCCCceEEeccCCCcEEEecccc
Q 043986 46 GVLQLNSYPVCPDPNRAMGLAPHTDSSLLT---SLYQ--GNTSGLQVY---RDNVGWVPVHPVSGALVVIVGDL 111 (195)
Q Consensus 46 ~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lT---lL~q--~~~~GLqv~---~~~g~W~~v~~~~g~~vVnvGd~ 111 (195)
...-+|+|++- -+++.|.|-.-+. .+.. =+.+..-.. +.++....+.-.+|+++|+-|+.
T Consensus 95 n~~LvN~Y~~G------d~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~s 162 (169)
T TIGR00568 95 DACLVNRYAPG------ATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGES 162 (169)
T ss_pred CEEEEEeecCC------CccccccccccccCCCCEEEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCch
Confidence 45678999874 3689999953221 1110 011111111 12345888999999999999863
No 37
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=59.74 E-value=6.7 Score=24.39 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=24.8
Q ss_pred EEeCCCceEEeccCCCcEEEecccchhhccCCcc
Q 043986 87 VYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRF 120 (195)
Q Consensus 87 v~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~ 120 (195)
|++++|+++.++..++ +.+|+..+.-.+...
T Consensus 10 VlT~dGeF~~ik~~~~---~~vG~eI~~~~~~~~ 40 (56)
T PF12791_consen 10 VLTPDGEFIKIKRKPG---MEVGQEIEFDEKDII 40 (56)
T ss_pred EEcCCCcEEEEeCCCC---CcccCEEEEechhhc
Confidence 5678899999999988 888998876665543
No 38
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=56.77 E-value=29 Score=28.05 Aligned_cols=46 Identities=20% Similarity=0.052 Sum_probs=28.5
Q ss_pred EEeecCCCceeEEe-CCCceEEeccCCCcEEEecccchhhccCCccc
Q 043986 76 SLYQGNTSGLQVYR-DNVGWVPVHPVSGALVVIVGDLMQITCNGRFK 121 (195)
Q Consensus 76 lL~q~~~~GLqv~~-~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~ 121 (195)
++.|+..+-..+.. +.|.=+.|||.-++.++|+||-=-.+.|=..+
T Consensus 116 m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~ 162 (209)
T COG2140 116 MLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPA 162 (209)
T ss_pred EEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeC
Confidence 33444443344443 23678889999999999999865555443333
No 39
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=47.45 E-value=24 Score=22.59 Aligned_cols=37 Identities=38% Similarity=0.436 Sum_probs=23.9
Q ss_pred CcccccccCCCC---eeEEe-------ecCCCceeEEeCCCceEEec
Q 043986 62 AMGLAPHTDSSL---LTSLY-------QGNTSGLQVYRDNVGWVPVH 98 (195)
Q Consensus 62 ~~g~~~HtD~~~---lTlL~-------q~~~~GLqv~~~~g~W~~v~ 98 (195)
..|.-|-+|..+ +|+|- |.-..-|||+..+|.|.+|.
T Consensus 15 snG~~P~tdg~liT~ltfL~pkd~~~vq~~f~~LQv~fgDGpWqdik 61 (64)
T PF06820_consen 15 SNGWFPETDGRLITGLTFLDPKDATRVQGVFRHLQVRFGDGPWQDIK 61 (64)
T ss_pred CCccccCCCcceEeeeEEecccCchhheeeeeeeEEEeccCChhhcc
Confidence 345566677544 44551 22245699999999999886
No 40
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=42.14 E-value=2.2e+02 Score=24.39 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=31.4
Q ss_pred EEeccCCCcEEEecccchhhccCCc-cccccccccCCCCCcceeEEEeeCCCC
Q 043986 95 VPVHPVSGALVVIVGDLMQITCNGR-FKSALHRALVNNTRHRISTAYFYGPPQ 146 (195)
Q Consensus 95 ~~v~~~~g~~vVnvGd~l~~~TnG~-~~s~~HRVv~~~~~~R~S~~~F~~p~~ 146 (195)
+.|.|..|..|+.-= ...||. =+.++|.+...-..+++++...++...
T Consensus 206 l~VkPkkG~ALlF~n----l~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~ 254 (310)
T PLN00052 206 LAVKPVKGDAVLFFS----LHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRS 254 (310)
T ss_pred eEeccCcceEEEEec----cCCCCCCCcccccCCCeeecCeEEEEEEeeeccc
Confidence 778898888776322 112343 246788887655567998887777643
No 41
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=36.04 E-value=54 Score=25.10 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=26.7
Q ss_pred CcEEEecccchhhccCCccc----cccccccCCCCCcceeEEE
Q 043986 102 GALVVIVGDLMQITCNGRFK----SALHRALVNNTRHRISTAY 140 (195)
Q Consensus 102 g~~vVnvGd~l~~~TnG~~~----s~~HRVv~~~~~~R~S~~~ 140 (195)
+...+.+|+.--.|..|..- |-.|-|.+.+..+|+-+.+
T Consensus 115 ~~~~~~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L~v 157 (163)
T PF05118_consen 115 PGCYIRVGGETRHWREGECWVFDDSFEHEVWNNGDEDRVVLIV 157 (163)
T ss_dssp TTEEEEETTEEEB--CTEEEEE-TTS-EEEEESSSS-EEEEEE
T ss_pred CCeEEEECCeEEEeccCcEEEEeCCEEEEEEeCCCCCEEEEEE
Confidence 44666677777888888753 7889999988889998765
No 42
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=35.22 E-value=55 Score=20.56 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchhh
Q 043986 8 KELKGLAEKILGLMFRSLGLTQEDI 32 (195)
Q Consensus 8 ~~~~~l~~~ll~~i~~~Lgl~~~~~ 32 (195)
+.-.++...|.+++++.||.|++.+
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~v 39 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKERV 39 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 4567889999999999999998754
No 43
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=34.84 E-value=62 Score=19.95 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchhh
Q 043986 8 KELKGLAEKILGLMFRSLGLTQEDI 32 (195)
Q Consensus 8 ~~~~~l~~~ll~~i~~~Lgl~~~~~ 32 (195)
++-.+++..|..++.+.||.+++.+
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~i 38 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPERI 38 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGE
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCeE
Confidence 4567899999999999999988643
No 44
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=33.34 E-value=62 Score=19.94 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchhh
Q 043986 8 KELKGLAEKILGLMFRSLGLTQEDI 32 (195)
Q Consensus 8 ~~~~~l~~~ll~~i~~~Lgl~~~~~ 32 (195)
++-.++...|.+.+++.+|.|++..
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (61)
T PRK02220 15 EQLKALVKDVTAAVSKNTGAPAEHI 39 (61)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 4567889999999999999988654
No 45
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=31.71 E-value=64 Score=20.11 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchhh
Q 043986 8 KELKGLAEKILGLMFRSLGLTQEDI 32 (195)
Q Consensus 8 ~~~~~l~~~ll~~i~~~Lgl~~~~~ 32 (195)
++-.+|+..|.+++++.+|.|++.+
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~v 39 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEAI 39 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceE
Confidence 4567899999999999999988654
No 46
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=31.56 E-value=33 Score=29.21 Aligned_cols=23 Identities=39% Similarity=0.807 Sum_probs=18.7
Q ss_pred CcccccccCCCCeeEEeecCCCceeEEe
Q 043986 62 AMGLAPHTDSSLLTSLYQGNTSGLQVYR 89 (195)
Q Consensus 62 ~~g~~~HtD~~~lTlL~q~~~~GLqv~~ 89 (195)
..-+++|||.+-+ +..+|+||..
T Consensus 186 kl~lg~HTD~TYF-----~~~~GiQvfH 208 (371)
T KOG3889|consen 186 KLELGPHTDGTYF-----DQTPGIQVFH 208 (371)
T ss_pred eeeecccCCCcee-----ccCCCceEEE
Confidence 4568999998765 7899999963
No 47
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=30.67 E-value=32 Score=20.95 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCchhh-hhh
Q 043986 2 VMVEYQKELKGLAEKILGLMFRSLGLTQEDI-AWF 35 (195)
Q Consensus 2 ~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~-~~~ 35 (195)
.|++++.........-...||..|||+...+ .||
T Consensus 14 ~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF 48 (57)
T PF00046_consen 14 VLEEYFQENPYPSKEEREELAKELGLTERQVKNWF 48 (57)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHhccccccccccccccccccccccccCH
Confidence 4677887777778888899999999998766 444
No 48
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=30.53 E-value=74 Score=19.22 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchhh
Q 043986 8 KELKGLAEKILGLMFRSLGLTQEDI 32 (195)
Q Consensus 8 ~~~~~l~~~ll~~i~~~Lgl~~~~~ 32 (195)
++-++++..|.+++++.+|.+++.+
T Consensus 14 eqk~~l~~~i~~~l~~~~g~~~~~v 38 (58)
T cd00491 14 EQKRELIERVTEAVSEILGAPEATI 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 5667889999999999999987643
No 49
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=30.11 E-value=76 Score=19.64 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchhh
Q 043986 8 KELKGLAEKILGLMFRSLGLTQEDI 32 (195)
Q Consensus 8 ~~~~~l~~~ll~~i~~~Lgl~~~~~ 32 (195)
++-.+++..|.+++++.||.+++..
T Consensus 15 eqK~~l~~~it~~l~~~lg~~~~~v 39 (63)
T TIGR00013 15 EQKRQLIEGVTEAMAETLGANLESI 39 (63)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccE
Confidence 4567889999999999999988643
No 50
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=30.03 E-value=79 Score=19.52 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchhh
Q 043986 8 KELKGLAEKILGLMFRSLGLTQEDI 32 (195)
Q Consensus 8 ~~~~~l~~~ll~~i~~~Lgl~~~~~ 32 (195)
++-.+++..|.+++.+.+|.+++.+
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPESV 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHE
Confidence 4567899999999999999988654
No 51
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=28.46 E-value=1.5e+02 Score=18.37 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=20.9
Q ss_pred ecCCCce-eEEeCCCceEEeccCCCcEEEecccchhhccC
Q 043986 79 QGNTSGL-QVYRDNVGWVPVHPVSGALVVIVGDLMQITCN 117 (195)
Q Consensus 79 q~~~~GL-qv~~~~g~W~~v~~~~g~~vVnvGd~l~~~Tn 117 (195)
....+|| ||...+|.-+.+.+-...+++ |++++..++
T Consensus 19 ~spi~GlyeV~~~~~~i~Y~~~dg~yli~--G~l~d~~~~ 56 (57)
T PF10411_consen 19 PSPIPGLYEVVLKGGGILYVDEDGRYLIQ--GQLYDLKTK 56 (57)
T ss_dssp E-SSTTEEEEEE-TTEEEEEETTSSEEEE--S-EEE-TTT
T ss_pred cCCCCCeEEEEECCCeEEEEcCCCCEEEE--eEEEecCCC
Confidence 3567776 455545566667665555554 998887765
No 52
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=26.08 E-value=1e+02 Score=24.16 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=25.6
Q ss_pred eeEEeecCCCceeEEeCCCceEEeccCCCcEEEec
Q 043986 74 LTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIV 108 (195)
Q Consensus 74 lTlL~q~~~~GLqv~~~~g~W~~v~~~~g~~vVnv 108 (195)
|.++. ++.+=.-|.+.++.|+.+....|.+||.-
T Consensus 96 iR~il-~GtgYfDVrd~dd~WIRi~vekGDlivlP 129 (179)
T KOG2107|consen 96 IRYIL-EGTGYFDVRDKDDQWIRIFVEKGDLIVLP 129 (179)
T ss_pred eEEEe-ecceEEeeccCCCCEEEEEEecCCEEEec
Confidence 34444 45666778888889999999999998853
No 53
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=25.07 E-value=81 Score=20.24 Aligned_cols=27 Identities=19% Similarity=0.371 Sum_probs=23.7
Q ss_pred ceEEeccCCCcEEEecccchhhccCCc
Q 043986 93 GWVPVHPVSGALVVIVGDLMQITCNGR 119 (195)
Q Consensus 93 ~W~~v~~~~g~~vVnvGd~l~~~TnG~ 119 (195)
-|+.+...++..++..||.|..-.+++
T Consensus 27 vWlT~~g~~~D~~L~~G~~l~l~~g~~ 53 (63)
T PF11142_consen 27 VWLTREGDPDDYWLQAGDSLRLRRGGR 53 (63)
T ss_pred EEEECCCCCCCEEECCCCEEEeCCCCE
Confidence 599999999999999999998776665
No 54
>PHA00689 hypothetical protein
Probab=24.86 E-value=72 Score=19.72 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.2
Q ss_pred cCCCceeEEeCCCceEEec
Q 043986 80 GNTSGLQVYRDNVGWVPVH 98 (195)
Q Consensus 80 ~~~~GLqv~~~~g~W~~v~ 98 (195)
.+..||.-.+++|+|+-..
T Consensus 23 cgktglrweddggewvlme 41 (62)
T PHA00689 23 CGKTGLRWEDDGGEWVLME 41 (62)
T ss_pred ccccCceeecCCCcEEEEe
Confidence 3577899999999998654
No 55
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=24.52 E-value=1.2e+02 Score=28.63 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=45.0
Q ss_pred CCCceeEEeCCCceEEeccCCCc----EEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCc
Q 043986 81 NTSGLQVYRDNVGWVPVHPVSGA----LVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKL 156 (195)
Q Consensus 81 ~~~GLqv~~~~g~W~~v~~~~g~----~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~ 156 (195)
..+||--++.-..+...||++|+ ++.|.||.++.+-... .|..-.-... ..|-| .+| | ...|.|.+.
T Consensus 600 n~~GLpkm~~vq~ysg~p~Pag~igP~l~~~~gdvlel~~~d~-~s~~w~gr~~--~sr~s-g~f--p--ss~vkp~~~- 670 (865)
T KOG2996|consen 600 NRPGLPKMDVVQNYSGIPPPAGSIGPRLVLQEGDVLELLKGDA-ESSWWEGRNH--GSRES-GNF--P--SSTVKPCPS- 670 (865)
T ss_pred CCCCCcchhhhhccCCCCCCCccCCCceEecCCceeehhcCCC-CCcccccCCc--cCCcc-CCC--C--ccccCcCCC-
Confidence 35665332221246778888887 8999999999654332 2211111111 11211 222 2 223445443
Q ss_pred cCCCCCCCCCCccHHHHHHH
Q 043986 157 TDHDHPILYRPVTWREYLDA 176 (195)
Q Consensus 157 ~~~~~~~~y~~~~~~ey~~~ 176 (195)
....+.|.++.+.+|...
T Consensus 671 --vpr~~~~~~~d~s~~~Wy 688 (865)
T KOG2996|consen 671 --VPRQQDYVPTDYSEFPWY 688 (865)
T ss_pred --CCCCCCCCccchhhhhhh
Confidence 223467899999998874
No 56
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.19 E-value=1.2e+02 Score=24.32 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 043986 2 VMVEYQKELKGLAEKILGLMFRSLGLTQ 29 (195)
Q Consensus 2 ~~~~y~~~~~~l~~~ll~~i~~~Lgl~~ 29 (195)
.++.|-+++.++-+.=-++|+++|||+.
T Consensus 61 ~~~~~keEi~~vkE~E~~al~eALGl~k 88 (238)
T KOG4520|consen 61 IKEKYKEEILEVKEREQRALAEALGLPK 88 (238)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3677888999999999999999999974
No 57
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=23.45 E-value=1.1e+02 Score=18.00 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=21.9
Q ss_pred eCCCceEEeccCCCcEEEecccchhhccCCc
Q 043986 89 RDNVGWVPVHPVSGALVVIVGDLMQITCNGR 119 (195)
Q Consensus 89 ~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~ 119 (195)
.++|.++..++..- -||.+|..=-+++||.
T Consensus 7 ~~dG~~~q~~~~~a-~ivl~GpSG~v~sdG~ 36 (40)
T PF08140_consen 7 TPDGTNVQFPHGVA-NIVLIGPSGAVLSDGK 36 (40)
T ss_pred CCCCCEEECCcccc-eEEEECCceEEeeCCc
Confidence 45667777665443 7888898888888885
No 58
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=22.55 E-value=51 Score=20.99 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=23.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHcCCCchhh
Q 043986 2 VMVEYQKELKG----LAEKILGLMFRSLGLTQEDI 32 (195)
Q Consensus 2 ~~~~y~~~~~~----l~~~ll~~i~~~Lgl~~~~~ 32 (195)
.|+++++...- ........+|..|||++.-+
T Consensus 15 ~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vv 49 (58)
T TIGR01565 15 KMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVF 49 (58)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHe
Confidence 46666666555 77778889999999988766
No 59
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=22.41 E-value=1.1e+02 Score=21.81 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchhh
Q 043986 8 KELKGLAEKILGLMFRSLGLTQEDI 32 (195)
Q Consensus 8 ~~~~~l~~~ll~~i~~~Lgl~~~~~ 32 (195)
++-.+++..|.+.+++.||++++.+
T Consensus 72 e~k~~l~~~i~~~l~~~lgi~~~rv 96 (116)
T PTZ00397 72 SNNSSIAAAITKILASHLKVKSERV 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 4567889999999999999999754
No 60
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=21.66 E-value=85 Score=21.97 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCCchhhhhh
Q 043986 13 LAEKILGLMFRSLGLTQEDIAWF 35 (195)
Q Consensus 13 l~~~ll~~i~~~Lgl~~~~~~~~ 35 (195)
=+.+|++.+++.|+|+.++|...
T Consensus 18 ~G~~l~~~la~~l~l~s~~F~~i 40 (91)
T PF11548_consen 18 EGSRLMEKLAELLHLPSSSFINI 40 (91)
T ss_dssp HHHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHHHHHHHHhCCCcccceee
Confidence 36789999999999999888543
No 61
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=21.58 E-value=1.5e+02 Score=23.40 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=6.1
Q ss_pred ceEEeccCCCcEEEe
Q 043986 93 GWVPVHPVSGALVVI 107 (195)
Q Consensus 93 ~W~~v~~~~g~~vVn 107 (195)
+++.+...+|.+++.
T Consensus 108 ~~~~v~~~~G~~v~I 122 (182)
T PF06560_consen 108 DVIAVEAKPGDVVYI 122 (182)
T ss_dssp -EEEEEE-TTEEEEE
T ss_pred eEEEEEeCCCCEEEE
Confidence 454455444444443
No 62
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=21.12 E-value=27 Score=28.13 Aligned_cols=59 Identities=24% Similarity=0.387 Sum_probs=40.4
Q ss_pred cCCCCeeEEee---cCCCceeEEeC--CCceEEeccCCCcEEEecccc--hhhccCCccccccccc
Q 043986 69 TDSSLLTSLYQ---GNTSGLQVYRD--NVGWVPVHPVSGALVVIVGDL--MQITCNGRFKSALHRA 127 (195)
Q Consensus 69 tD~~~lTlL~q---~~~~GLqv~~~--~g~W~~v~~~~g~~vVnvGd~--l~~~TnG~~~s~~HRV 127 (195)
...+.+|+|-+ +..+|.+.... .+.|+.+.+..+.+||.+|+. +--...|..+.....|
T Consensus 105 k~v~WlT~Lg~~~l~~LGG~~~lr~~L~~~~~~i~~~~~g~vI~aG~~P~lGd~~~~~~P~~Y~~v 170 (208)
T PF11876_consen 105 KGVNWLTFLGDPLLEKLGGEDALRSALPGPWIRIHPYGGGVVIQAGEWPELGDTEEGGVPPAYRAV 170 (208)
T ss_pred CCcchhheeCHHHHHhhccHHHHHhhCCCCceEEEECCCcEEEEeCCCCCCcCcCCCCCcHHHHHH
Confidence 35689999975 45777664221 237999999999999999986 4445555455544444
No 63
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=20.01 E-value=1.7e+02 Score=23.38 Aligned_cols=25 Identities=16% Similarity=-0.011 Sum_probs=19.5
Q ss_pred CceEEeccCCCcEEEecccchhhcc
Q 043986 92 VGWVPVHPVSGALVVIVGDLMQITC 116 (195)
Q Consensus 92 g~W~~v~~~~g~~vVnvGd~l~~~T 116 (195)
|.+..+.-.+|.++|..|..=..|.
T Consensus 154 ~~~~~~~L~~Gdvvvm~G~~r~~~~ 178 (194)
T COG3145 154 GPGLRLRLEHGDVVVMGGPSRLAWH 178 (194)
T ss_pred CCceeEEecCCCEEEecCCcccccc
Confidence 6799999999999999985443333
Done!