Query 043987
Match_columns 152
No_of_seqs 125 out of 665
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 17:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 62.4 11 0.00037 25.0 4.3 57 54-114 12-74 (109)
2 3drz_A BTB/POZ domain-containi 60.3 23 0.00078 24.6 5.8 62 51-114 6-72 (107)
3 1w8x_N Protein P31, protein C, 51.5 4.7 0.00016 29.9 1.0 28 49-76 86-123 (126)
4 1und_A Advillin, P92; actin bi 47.0 7.5 0.00026 23.2 1.2 20 68-87 1-20 (37)
5 2vpk_A Myoneurin; transcriptio 45.0 34 0.0012 22.9 4.6 48 60-114 31-83 (116)
6 1vd2_A Protein kinase C, IOTA 43.9 15 0.00051 25.7 2.6 35 58-96 15-49 (89)
7 2al3_A TUG long isoform; TUG U 40.6 21 0.00071 25.2 2.9 37 52-90 11-47 (90)
8 1r29_A B-cell lymphoma 6 prote 37.8 40 0.0014 23.0 4.1 55 55-114 34-92 (127)
9 3ga1_A Nucleus accumbens-assoc 33.5 57 0.0019 22.4 4.3 53 54-114 37-93 (129)
10 2if5_A Zinc finger and BTB dom 30.1 74 0.0025 21.3 4.4 52 60-114 34-88 (120)
11 2bkf_A Zinc-finger protein NBR 29.5 82 0.0028 22.0 4.5 55 54-111 11-74 (87)
12 3drx_A BTB/POZ domain-containi 29.4 68 0.0023 25.4 4.6 64 49-114 10-78 (202)
13 1wj6_A KIAA0049 protein, RSGI 26.8 1.1E+02 0.0037 22.0 4.8 56 54-112 19-83 (101)
14 1z3x_A Putative cytidyltransfe 26.2 4.9 0.00017 33.0 -2.7 30 45-75 207-236 (238)
15 1y6i_A Mg-chelatase cofactor G 25.6 7.2 0.00025 31.9 -1.8 30 45-76 199-229 (233)
16 1yu8_X Villin; alpha helix, 3- 24.4 27 0.00092 23.3 1.1 20 68-87 31-50 (67)
17 2q81_A MIZ-1 protein; BTB/POZ 24.4 1.3E+02 0.0044 20.2 4.8 47 60-114 36-85 (119)
18 2xko_C PIPX, global nitrogen r 24.2 8.1 0.00028 27.5 -1.6 14 68-81 5-18 (89)
19 3b84_A Zinc finger and BTB dom 23.8 1.1E+02 0.0039 20.5 4.4 48 60-114 33-83 (119)
20 3ohu_A Transcription regulator 22.7 75 0.0026 21.5 3.3 54 55-114 37-94 (125)
21 1ujs_A Actin-binding LIM prote 22.1 32 0.0011 24.2 1.2 20 68-87 46-65 (88)
22 1qzp_A Dematin; villin headpie 21.6 24 0.00081 23.5 0.4 20 68-87 32-51 (68)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=62.44 E-value=11 Score=25.04 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=40.9
Q ss_pred EEEecc---ceeeeeeccCc--CcHHHHHHHHhhHHhcCCCCCCCcccc-CcHHHHHHHHHHHHcCC
Q 043987 54 VIYTTD---QRRYVLPLTYL--NSSIFLELLKLSEEEYGLKSDGPITLP-CDAVFMDLVVSFIQRGI 114 (152)
Q Consensus 54 ~VYVGe---~~RfvVp~~yL--~hP~F~~LL~~seeEfG~~~~G~L~IP-Cd~~~Fe~vl~~l~~~~ 114 (152)
.+.||+ .++|-+.-..| ..|.|+.++...-.|- . ..|.+| .+...|+.++..+-.+.
T Consensus 12 ~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 12 HFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 445555 48999988888 6899999997543332 2 678887 68899999999998764
No 2
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=60.30 E-value=23 Score=24.56 Aligned_cols=62 Identities=10% Similarity=0.221 Sum_probs=44.6
Q ss_pred CeEEEEeccceeeeeeccCcC-cH--HHHHHHHhhHHhcC--CCCCCCccccCcHHHHHHHHHHHHcCC
Q 043987 51 GHFVIYTTDQRRYVLPLTYLN-SS--IFLELLKLSEEEYG--LKSDGPITLPCDAVFMDLVVSFIQRGI 114 (152)
Q Consensus 51 G~~~VYVGe~~RfvVp~~yL~-hP--~F~~LL~~seeEfG--~~~~G~L~IPCd~~~Fe~vl~~l~~~~ 114 (152)
..+.+-|| +.+|.+...-|. +| .|..|.... .++. .+.+|.+-|-.|...|++||..++.+.
T Consensus 6 ~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 6 KWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 46677787 678888776654 34 566665432 1222 346899999999999999999999774
No 3
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=51.52 E-value=4.7 Score=29.87 Aligned_cols=28 Identities=29% Similarity=0.599 Sum_probs=19.1
Q ss_pred CCCeEEEEeccceeee----------eeccCcCcHHHH
Q 043987 49 EKGHFVIYTTDQRRYV----------LPLTYLNSSIFL 76 (152)
Q Consensus 49 pkG~~~VYVGe~~Rfv----------Vp~~yL~hP~F~ 76 (152)
..|||||.|-.+-+|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CcccceeeccchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 5799999997766666 688899988754
No 4
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=46.96 E-value=7.5 Score=23.22 Aligned_cols=20 Identities=15% Similarity=0.478 Sum_probs=17.6
Q ss_pred cCcCcHHHHHHHHhhHHhcC
Q 043987 68 TYLNSSIFLELLKLSEEEYG 87 (152)
Q Consensus 68 ~yL~hP~F~~LL~~seeEfG 87 (152)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999983
No 5
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=45.05 E-value=34 Score=22.94 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=37.7
Q ss_pred ceeeeeeccCc--CcHHHHHHHHhhHHhcCCCCCCCcccc---CcHHHHHHHHHHHHcCC
Q 043987 60 QRRYVLPLTYL--NSSIFLELLKLSEEEYGLKSDGPITLP---CDAVFMDLVVSFIQRGI 114 (152)
Q Consensus 60 ~~RfvVp~~yL--~hP~F~~LL~~seeEfG~~~~G~L~IP---Cd~~~Fe~vl~~l~~~~ 114 (152)
.++|-+.-..| ..|.|+.++... .++.|.|+ .+...|+.++..+-.+.
T Consensus 31 ~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 31 EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 45777777776 579999999764 35677777 78999999999988764
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=43.88 E-value=15 Score=25.66 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=27.8
Q ss_pred ccceeeeeeccCcCcHHHHHHHHhhHHhcCCCCCCCccc
Q 043987 58 TDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITL 96 (152)
Q Consensus 58 Ge~~RfvVp~~yL~hP~F~~LL~~seeEfG~~~~G~L~I 96 (152)
||-+|+.||. ..-|++|.++-.+-|++..+.++++
T Consensus 15 gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 15 GDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 7778999987 4689999999999999865555444
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=40.64 E-value=21 Score=25.16 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=27.8
Q ss_pred eEEEEeccceeeeeeccCcCcHHHHHHHHhhHHhcCCCC
Q 043987 52 HFVIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKS 90 (152)
Q Consensus 52 ~~~VYVGe~~RfvVp~~yL~hP~F~~LL~~seeEfG~~~ 90 (152)
++.|.-...+|+.|++ -..-.+.++|++|-+.|||+.
T Consensus 11 ~v~Vl~~n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKV--TPSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp CEEEECTTSCEEEECC--CTTSBHHHHHHHHHHHTTCCG
T ss_pred EEEEEcCCCcEEEEEE--CCCCCHHHHHHHHHHHhCCCh
Confidence 3444445689999998 344478899999999999973
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=37.83 E-value=40 Score=22.98 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=41.4
Q ss_pred EEeccceeeeeeccCc--CcHHHHHHHHhhHHhcCCCCCCCccc-c-CcHHHHHHHHHHHHcCC
Q 043987 55 IYTTDQRRYVLPLTYL--NSSIFLELLKLSEEEYGLKSDGPITL-P-CDAVFMDLVVSFIQRGI 114 (152)
Q Consensus 55 VYVGe~~RfvVp~~yL--~hP~F~~LL~~seeEfG~~~~G~L~I-P-Cd~~~Fe~vl~~l~~~~ 114 (152)
+.|| .++|-+.-..| ..|.|+.++...-.| ....|.| + .+...|+.++..+-.+.
T Consensus 34 l~v~-~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 34 IVVS-REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 3344 46777777777 689999999865444 4678899 4 68899999999988764
No 9
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=33.49 E-value=57 Score=22.36 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=39.9
Q ss_pred EEEeccceeeeeeccCcC--cHHHHHHHHhhHHhcCCCCCCCcccc--CcHHHHHHHHHHHHcCC
Q 043987 54 VIYTTDQRRYVLPLTYLN--SSIFLELLKLSEEEYGLKSDGPITLP--CDAVFMDLVVSFIQRGI 114 (152)
Q Consensus 54 ~VYVGe~~RfvVp~~yL~--hP~F~~LL~~seeEfG~~~~G~L~IP--Cd~~~Fe~vl~~l~~~~ 114 (152)
.+.|| .++|-+.-..|. .|.|++++... ....|.|| .+...|+.++..+-.+.
T Consensus 37 ~l~v~-~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg~ 93 (129)
T 3ga1_A 37 SVVVK-GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTGR 93 (129)
T ss_dssp EEEET-TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHSE
T ss_pred EEEEC-CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCCc
Confidence 33444 466777666664 79999999875 46788996 88999999999988664
No 10
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=30.09 E-value=74 Score=21.27 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=37.3
Q ss_pred ceeeeeeccCc--CcHHHHHHHHhhHHhcCCCCCCCcccc-CcHHHHHHHHHHHHcCC
Q 043987 60 QRRYVLPLTYL--NSSIFLELLKLSEEEYGLKSDGPITLP-CDAVFMDLVVSFIQRGI 114 (152)
Q Consensus 60 ~~RfvVp~~yL--~hP~F~~LL~~seeEfG~~~~G~L~IP-Cd~~~Fe~vl~~l~~~~ 114 (152)
.++|-+.-..| ..|.|+.++...-.| .....|.++ .+...|+.++..+-.+.
T Consensus 34 ~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 34 GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 56777777777 489999999754333 235678888 58899999999988765
No 11
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=29.46 E-value=82 Score=22.04 Aligned_cols=55 Identities=4% Similarity=0.253 Sum_probs=38.6
Q ss_pred EEEeccceeeeeeccCcCcHHHHHHHHhhHHhcCCC--------C-CCCccccCcHHHHHHHHHHHH
Q 043987 54 VIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLK--------S-DGPITLPCDAVFMDLVVSFIQ 111 (152)
Q Consensus 54 ~VYVGe~~RfvVp~~yL~hP~F~~LL~~seeEfG~~--------~-~G~L~IPCd~~~Fe~vl~~l~ 111 (152)
+-|.||.+||.|. ++.++-|.+|-.+-..-||+. . +..|+|.=+.+ |+..+++..
T Consensus 11 V~f~ge~~rf~vs--~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E-~eEAlkva~ 74 (87)
T 2bkf_A 11 VTFKNEIQSFLVS--DPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGE-YEEALKMAV 74 (87)
T ss_dssp EEETTEEEEEEES--CGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHH-HHHHHHHHH
T ss_pred EEEcCCeeEEEec--cCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHH-HHHHHHHhc
Confidence 3466899999875 889999999999999999954 2 34566665444 444444433
No 12
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=29.43 E-value=68 Score=25.38 Aligned_cols=64 Identities=9% Similarity=0.204 Sum_probs=44.6
Q ss_pred CCCeEEEEeccceeeeeeccCcC-cH--HHHHHHHhhHHhcC--CCCCCCccccCcHHHHHHHHHHHHcCC
Q 043987 49 EKGHFVIYTTDQRRYVLPLTYLN-SS--IFLELLKLSEEEYG--LKSDGPITLPCDAVFMDLVVSFIQRGI 114 (152)
Q Consensus 49 pkG~~~VYVGe~~RfvVp~~yL~-hP--~F~~LL~~seeEfG--~~~~G~L~IPCd~~~Fe~vl~~l~~~~ 114 (152)
....+.+-|| +.||.+...-|. +| .|..|...- .++. .+.+|.+-|-.|...|++||..++.|.
T Consensus 10 ~~~~V~LNVG-G~~F~Tt~sTL~r~PdS~L~~lfs~~-~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~ 78 (202)
T 3drx_A 10 VSKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 78 (202)
T ss_dssp CCCEEEEEET-TEEEEEETTGGGSCTTSSTHHHHSCC-CC----BCTTCCEEECSCSTTHHHHHHHHHHSC
T ss_pred CCCEEEEEEC-CEEEEEeHHHHhCCCcchHHHHhcCc-cccCcccCCCccEEecCChHHHHHHHHHhcCCc
Confidence 3456777788 578888876664 34 566664321 1232 346899999999999999999999764
No 13
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=26.81 E-value=1.1e+02 Score=22.03 Aligned_cols=56 Identities=4% Similarity=0.265 Sum_probs=39.0
Q ss_pred EEEeccceeeeeeccCcCcHHHHHHHHhhHHhcCCC--------C-CCCccccCcHHHHHHHHHHHHc
Q 043987 54 VIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLK--------S-DGPITLPCDAVFMDLVVSFIQR 112 (152)
Q Consensus 54 ~VYVGe~~RfvVp~~yL~hP~F~~LL~~seeEfG~~--------~-~G~L~IPCd~~~Fe~vl~~l~~ 112 (152)
+-|.||.+||.|. ++.++-|.+|-.+...-||+. . +..|+|.=+.+ |+..+++..+
T Consensus 19 V~f~ge~~rF~Vs--~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~E-~eEAlkva~k 83 (101)
T 1wj6_A 19 VTFKNEIQSFLVS--DPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGE-YEEALKMAVK 83 (101)
T ss_dssp EEETTEEEEEEES--CTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHHH-HHHHHHHHHH
T ss_pred EEEcCCeeEEEec--CCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHHH-HHHHHHHhcc
Confidence 4466899999875 899999999999999999954 2 34456665443 4444444433
No 14
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=26.18 E-value=4.9 Score=33.02 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=19.1
Q ss_pred CCCCCCCeEEEEeccceeeeeeccCcCcHHH
Q 043987 45 SSVAEKGHFVIYTTDQRRYVLPLTYLNSSIF 75 (152)
Q Consensus 45 ~~~vpkG~~~VYVGe~~RfvVp~~yL~hP~F 75 (152)
+..+|+||+|+.-. -+=.-+=..+|+||.|
T Consensus 207 sl~AP~GHLP~~~~-lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQ-LRGVQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCCC-TTCSHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCcc-cccHHHHHHHHcCccc
Confidence 44689999998642 1112233468888876
No 15
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=25.61 E-value=7.2 Score=31.91 Aligned_cols=30 Identities=13% Similarity=0.229 Sum_probs=20.5
Q ss_pred CCCCCCCeEEEEecc-ceeeeeeccCcCcHHHH
Q 043987 45 SSVAEKGHFVIYTTD-QRRYVLPLTYLNSSIFL 76 (152)
Q Consensus 45 ~~~vpkG~~~VYVGe-~~RfvVp~~yL~hP~F~ 76 (152)
+..+|+||+|+.-.= +-| +=-.+|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 446899999986531 222 445689999884
No 16
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=24.41 E-value=27 Score=23.30 Aligned_cols=20 Identities=10% Similarity=0.305 Sum_probs=18.5
Q ss_pred cCcCcHHHHHHHHhhHHhcC
Q 043987 68 TYLNSSIFLELLKLSEEEYG 87 (152)
Q Consensus 68 ~yL~hP~F~~LL~~seeEfG 87 (152)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999984
No 17
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=24.35 E-value=1.3e+02 Score=20.24 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=36.5
Q ss_pred ceeeeeeccCc--CcHHHHHHHHhhHHhcCCCCCCCccccC-cHHHHHHHHHHHHcCC
Q 043987 60 QRRYVLPLTYL--NSSIFLELLKLSEEEYGLKSDGPITLPC-DAVFMDLVVSFIQRGI 114 (152)
Q Consensus 60 ~~RfvVp~~yL--~hP~F~~LL~~seeEfG~~~~G~L~IPC-d~~~Fe~vl~~l~~~~ 114 (152)
.++|-+.-..| ..|.|++++.. +...|.++- +...|+.++..+-.+.
T Consensus 36 ~~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~ 85 (119)
T 2q81_A 36 GVHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFMYTAK 85 (119)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHHHHSC
T ss_pred CEEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHHcCCC
Confidence 46777777777 48999999975 245678875 6889999999988765
No 18
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=24.17 E-value=8.1 Score=27.46 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=11.0
Q ss_pred cCcCcHHHHHHHHh
Q 043987 68 TYLNSSIFLELLKL 81 (152)
Q Consensus 68 ~yL~hP~F~~LL~~ 81 (152)
.|||||.|.-|-.-
T Consensus 5 ~YLNHPtFGlLy~V 18 (89)
T 2xko_C 5 NYLNHPTFGLLYQI 18 (89)
T ss_dssp CEEEETTTEEEEEE
T ss_pred ccccCCccchhhee
Confidence 59999999877554
No 19
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=23.80 E-value=1.1e+02 Score=20.48 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=36.7
Q ss_pred ceeeeeeccCc--CcHHHHHHHHhhHHhcCCCCCCCcccc-CcHHHHHHHHHHHHcCC
Q 043987 60 QRRYVLPLTYL--NSSIFLELLKLSEEEYGLKSDGPITLP-CDAVFMDLVVSFIQRGI 114 (152)
Q Consensus 60 ~~RfvVp~~yL--~hP~F~~LL~~seeEfG~~~~G~L~IP-Cd~~~Fe~vl~~l~~~~ 114 (152)
.++|-+.-..| ..|.|+.++... . .+.|.|| .+...|+.++..+-.+.
T Consensus 33 ~~~f~aHk~vLaa~S~yF~~~f~~~-----~--~~~i~l~~~~~~~f~~ll~~iYtg~ 83 (119)
T 3b84_A 33 GLVFKAHWSVLACCSHFFQSLYGDG-----S--GGSVVLPAGFAEIFGLLLDFFYTGH 83 (119)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTTT-----T--CCCEEECGGGHHHHHHHHHHHHHSC
T ss_pred CEEEEeeHHHHhhcCHHHHHHHCCC-----C--CCeEEeCCCCHHHHHHHHHHHcCCC
Confidence 46777776666 479999998752 1 5788888 56889999999998765
No 20
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=22.67 E-value=75 Score=21.48 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=38.9
Q ss_pred EEeccceeeeeeccCcC--cHHHHHHHHhhHHhcCCCCCCCcccc--CcHHHHHHHHHHHHcCC
Q 043987 55 IYTTDQRRYVLPLTYLN--SSIFLELLKLSEEEYGLKSDGPITLP--CDAVFMDLVVSFIQRGI 114 (152)
Q Consensus 55 VYVGe~~RfvVp~~yL~--hP~F~~LL~~seeEfG~~~~G~L~IP--Cd~~~Fe~vl~~l~~~~ 114 (152)
+.|| .++|-+.-..|. .|.|++++..... ....|.+| .+...|+.++..+-.+.
T Consensus 37 l~v~-~~~f~aHk~vLaa~S~yF~~~f~~~~~-----e~~~i~l~~~~~~~~f~~~l~~iYtg~ 94 (125)
T 3ohu_A 37 LIVE-RKEFRAHRAVLAACSEYFWQALVGQTK-----NDLVVSLPEEVTARGFGPLLQFAYTAK 94 (125)
T ss_dssp EEET-TEEEEECHHHHHHHBHHHHHHHTTCCC-----SSCEEECCTTCCHHHHHHHHHHHTTSE
T ss_pred EEEC-CEEEechHHHHHHcCHHHHHHhcCCCC-----CCcEEEeCCCCCHHHHHHHHHhHcCCc
Confidence 3344 456766666664 6999999976432 35677886 78999999999988764
No 21
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=22.15 E-value=32 Score=24.17 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=18.7
Q ss_pred cCcCcHHHHHHHHhhHHhcC
Q 043987 68 TYLNSSIFLELLKLSEEEYG 87 (152)
Q Consensus 68 ~yL~hP~F~~LL~~seeEfG 87 (152)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999984
No 22
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=21.58 E-value=24 Score=23.53 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=18.4
Q ss_pred cCcCcHHHHHHHHhhHHhcC
Q 043987 68 TYLNSSIFLELLKLSEEEYG 87 (152)
Q Consensus 68 ~yL~hP~F~~LL~~seeEfG 87 (152)
.||+.-.|++++.|+.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999983
Done!