Query 043987
Match_columns 152
No_of_seqs 125 out of 665
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 17:52:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043987.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043987hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bkfa1 d.15.2.2 (A:1-85) Next 61.5 3.5 0.00025 27.2 3.3 48 56-105 11-67 (85)
2 d1y6ia2 a.261.1.1 (A:83-233) M 59.1 0.41 3E-05 35.1 -2.0 31 45-77 117-148 (151)
3 d1z3xa2 a.261.1.1 (A:88-235) G 57.9 0.33 2.4E-05 35.5 -2.7 31 45-76 117-147 (148)
4 d1unda_ a.14.1.1 (A:) Advillin 47.3 3.5 0.00025 23.2 1.2 18 69-86 1-18 (36)
5 d2r85a1 c.30.1.8 (A:1-99) 5-fo 28.6 1.1 8.1E-05 30.7 -3.7 23 45-67 64-88 (99)
6 d1fc4a_ c.67.1.4 (A:) 2-amino- 28.3 42 0.003 26.0 5.3 36 55-90 39-79 (401)
7 d2al3a1 d.15.1.2 (A:10-85) Tet 25.8 30 0.0022 22.0 3.3 37 52-90 2-38 (76)
8 d1yu5x1 a.14.1.1 (X:10-76) Vil 25.3 12 0.00087 23.5 1.1 19 68-86 31-49 (67)
9 d2c9wc1 d.42.1.1 (C:17-112) El 22.2 32 0.0023 21.8 2.9 53 58-111 8-62 (96)
10 d2pbza1 c.30.1.8 (A:4-99) 5-fo 21.5 1.9 0.00014 29.4 -3.7 23 45-67 59-83 (96)
11 d1ujsa_ a.14.1.1 (A:) Actin-bi 20.8 16 0.0012 24.0 1.2 20 68-87 46-65 (88)
No 1
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.48 E-value=3.5 Score=27.23 Aligned_cols=48 Identities=2% Similarity=0.287 Sum_probs=35.1
Q ss_pred EeccceeeeeeccCcCcHHHHHHHHhhHHhcCCC--------C-CCCccccCcHHHHHH
Q 043987 56 YTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLK--------S-DGPITLPCDAVFMDL 105 (152)
Q Consensus 56 YVGe~~RfvVp~~yL~hP~F~~LL~~seeEfG~~--------~-~G~L~IPCd~~~Fe~ 105 (152)
|-||.+||.|+. =+++.|.+|..+-+.-||.+ . +--++|.|++++=|.
T Consensus 11 f~~dt~RF~ls~--~~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~ 67 (85)
T d2bkfa1 11 FKNEIQSFLVSD--PENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEA 67 (85)
T ss_dssp ETTEEEEEEESC--GGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHH
T ss_pred ECCceEEEEecC--CCCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHH
Confidence 446789999863 24778999999999988842 2 334789998876554
No 2
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=59.11 E-value=0.41 Score=35.05 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=20.5
Q ss_pred CCCCCCCeEEEEeccc-eeeeeeccCcCcHHHHH
Q 043987 45 SSVAEKGHFVIYTTDQ-RRYVLPLTYLNSSIFLE 77 (152)
Q Consensus 45 ~~~vpkG~~~VYVGe~-~RfvVp~~yL~hP~F~~ 77 (152)
+..+|+||+|+...-+ -| +--..|+||.|.+
T Consensus 117 ~l~AP~GHLP~~~~lrG~~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 117 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWSQ 148 (151)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHHH
T ss_pred cCCCCCCCCCccchhhhHH--HHHHHHcCcchhh
Confidence 3468999999864322 12 3334899999865
No 3
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=57.94 E-value=0.33 Score=35.48 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=20.6
Q ss_pred CCCCCCCeEEEEeccceeeeeeccCcCcHHHH
Q 043987 45 SSVAEKGHFVIYTTDQRRYVLPLTYLNSSIFL 76 (152)
Q Consensus 45 ~~~vpkG~~~VYVGe~~RfvVp~~yL~hP~F~ 76 (152)
+..+|+||+|+. +..+-+-|=-.+|+||.|.
T Consensus 117 ~l~AP~GHLP~~-~~lrg~~~~~~~l~h~a~~ 147 (148)
T d1z3xa2 117 DLSAPRGHLPLT-NQLRGVQVLNALLNHPAWT 147 (148)
T ss_dssp STTSCTTCCSCC-CCTTCSHHHHHHHTCGGGG
T ss_pred cCCCCCCCCCcC-CccchHHHHHHHhcCcccc
Confidence 346899999974 4444444455678888763
No 4
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.29 E-value=3.5 Score=23.23 Aligned_cols=18 Identities=17% Similarity=0.587 Sum_probs=16.9
Q ss_pred CcCcHHHHHHHHhhHHhc
Q 043987 69 YLNSSIFLELLKLSEEEY 86 (152)
Q Consensus 69 yL~hP~F~~LL~~seeEf 86 (152)
||+.-.|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 789999999999999998
No 5
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=28.56 E-value=1.1 Score=30.73 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=17.4
Q ss_pred CCCCCCCeEEEEec-c-ceeeeeec
Q 043987 45 SSVAEKGHFVIYTT-D-QRRYVLPL 67 (152)
Q Consensus 45 ~~~vpkG~~~VYVG-e-~~RfvVp~ 67 (152)
..-+|.|.|++|+| | -+.|.||+
T Consensus 64 ~I~IPhgSfv~Y~G~d~ie~~~VP~ 88 (99)
T d2r85a1 64 AVVVPTGSFVAHLGIELVENMKVPY 88 (99)
T ss_dssp EEECCCTTHHHHHCHHHHHTCCSCB
T ss_pred EEEecCCCEEEEEcHHHHhcCCCCc
Confidence 34689999999999 3 24488874
No 6
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=28.34 E-value=42 Score=25.97 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=27.0
Q ss_pred EEeccceeee--eeccCc---CcHHHHHHHHhhHHhcCCCC
Q 043987 55 IYTTDQRRYV--LPLTYL---NSSIFLELLKLSEEEYGLKS 90 (152)
Q Consensus 55 VYVGe~~Rfv--Vp~~yL---~hP~F~~LL~~seeEfG~~~ 90 (152)
|++.|.++|+ ..-+|| +||.+++....+-+.||...
T Consensus 39 v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~ 79 (401)
T d1fc4a_ 39 ITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGM 79 (401)
T ss_dssp EEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCC
T ss_pred EEecCCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCc
Confidence 4556777775 344565 49999999999999999654
No 7
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.83 E-value=30 Score=22.03 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=28.5
Q ss_pred eEEEEeccceeeeeeccCcCcHHHHHHHHhhHHhcCCCC
Q 043987 52 HFVIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKS 90 (152)
Q Consensus 52 ~~~VYVGe~~RfvVp~~yL~hP~F~~LL~~seeEfG~~~ 90 (152)
++.|..-..||..|++.= .-...+.|++|-+.|||+.
T Consensus 2 ~V~Vl~~~~rR~~VKvtP--~t~l~~VL~eaC~k~~~~~ 38 (76)
T d2al3a1 2 AVSVLAPNGRRHTVKVTP--STVLLQVLEDTCRRQDFNP 38 (76)
T ss_dssp CEEEECTTSCEEEECCCT--TSBHHHHHHHHHHHTTCCG
T ss_pred cEEEECCCCcEEEEEeCC--CcCHHHHHHHHHHHhCCCh
Confidence 456666678999998743 3367889999999999974
No 8
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=25.28 E-value=12 Score=23.51 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=18.0
Q ss_pred cCcCcHHHHHHHHhhHHhc
Q 043987 68 TYLNSSIFLELLKLSEEEY 86 (152)
Q Consensus 68 ~yL~hP~F~~LL~~seeEf 86 (152)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 5999999999999999998
No 9
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.15 E-value=32 Score=21.79 Aligned_cols=53 Identities=8% Similarity=0.170 Sum_probs=33.6
Q ss_pred ccceeeeeeccCcC-cHHHHHHHHhhHHhcCCCCCCCcccc-CcHHHHHHHHHHHH
Q 043987 58 TDQRRYVLPLTYLN-SSIFLELLKLSEEEYGLKSDGPITLP-CDAVFMDLVVSFIQ 111 (152)
Q Consensus 58 Ge~~RfvVp~~yL~-hP~F~~LL~~seeEfG~~~~G~L~IP-Cd~~~Fe~vl~~l~ 111 (152)
.|+.+|.|+.+... .+.++.+|+... .++=..+++|.+| =+...++.|+.-++
T Consensus 8 sDg~~f~V~~~~A~~S~tI~~ml~~~~-~~~e~~~~~IpL~nV~s~iL~kViey~~ 62 (96)
T d2c9wc1 8 SDGHEFIVKREHALTSGTIKAMLSGPG-QFAENETNEVNFREIPSHVLSKVCMYFT 62 (96)
T ss_dssp TTCCEEEEEHHHHTTSHHHHHC-------------CEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEeeHHHHHHhHHHHHHHhccC-ccccCCCCeeECCCCCHHHHHHHHHHHH
Confidence 47899999999885 568888886432 1111346788887 47889999987775
No 10
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=21.46 E-value=1.9 Score=29.40 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=17.4
Q ss_pred CCCCCCCeEEEEec-c-ceeeeeec
Q 043987 45 SSVAEKGHFVIYTT-D-QRRYVLPL 67 (152)
Q Consensus 45 ~~~vpkG~~~VYVG-e-~~RfvVp~ 67 (152)
..-+|.|.|++|+| | -+.+.||+
T Consensus 59 aI~IPhgSfv~Y~G~~~ie~~~VP~ 83 (96)
T d2pbza1 59 GIVVPHGSFVAYLGIEAIEKAKARF 83 (96)
T ss_dssp SBCCCBTTHHHHSCHHHHHTCCSCC
T ss_pred eEEEcCCCEEEEecHHHHhhCCCCc
Confidence 46799999999999 3 24576664
No 11
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.81 E-value=16 Score=24.04 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=18.6
Q ss_pred cCcCcHHHHHHHHhhHHhcC
Q 043987 68 TYLNSSIFLELLKLSEEEYG 87 (152)
Q Consensus 68 ~yL~hP~F~~LL~~seeEfG 87 (152)
.||+.--|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T d1ujsa_ 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999984
Done!