BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043988
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CT7|A Chain A, Solution Structure Of The Ibr Domain Of The Ring Finger
Protein 31 Protein
Length = 86
Score = 32.7 bits (73), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 90 LCESALVGHKKF-YCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKVPW---HSEFDC 145
L E L+ KF +C CS I E E + ++ CP C + FCV+CK W H C
Sbjct: 14 LTEGVLMRDPKFLWCA--QCSFGFIYEREQL-EATCPQCHQTFCVRCKRQWEEQHRGRSC 70
Query: 146 SQFQ 149
FQ
Sbjct: 71 EDFQ 74
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 63 LGCEARLEFEDCRLILPDDVFARWGLA-LCESA--------------LVGHKKFYCPYKD 107
+GC E+C +LP +VF +A +C S L +K C + D
Sbjct: 50 IGCSDSRYNENCLGVLPGEVFTWKNVANICHSEDLTLKATLEFAIICLKVNKVIICGHTD 109
Query: 108 CSSM---LIDEGEAIRKSNCPHCRRLF 131
C + L ++ EA+ K NC H +
Sbjct: 110 CGGIKTCLTNQREALPKVNCSHLYKYL 136
>pdb|1WIM|A Chain A, Solution Structure Of The Ring Finger Domain Of The
Human Ubcm4-Interacting Protein 4
Length = 94
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 16 CEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKL-EGNITNISCPQLGC--EARLEFE 72
C++C+ + + C CT C+ +Y+ + EG T ISCP C + L+
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67
Query: 73 DCRLILPDDVFARW 86
+ ++ ++ R+
Sbjct: 68 EIECMVAAEIMQRY 81
>pdb|4GP0|A Chain A, The Crystal Structure Of Human Fascin 1 R149a K150a R151a
Mutant
pdb|4GP0|B Chain B, The Crystal Structure Of Human Fascin 1 R149a K150a R151a
Mutant
Length = 493
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 30 DVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARWGL 88
D G + S + RY+A+ +GN+T CE + DCR ++ RW L
Sbjct: 53 DEAGSAAVCLRSHLGRYLAADKDGNVT--------CEREVPGPDCRFLIVAHDDGRWSL 103
>pdb|3P53|A Chain A, Structure Of Fascin
pdb|3P53|B Chain B, Structure Of Fascin
Length = 496
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 30 DVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARWGL 88
D G + S + RY+A+ +GN+T CE + DCR ++ RW L
Sbjct: 56 DEAGSAAVCLRSHLGRYLAADKDGNVT--------CEREVPGPDCRFLIVAHDDGRWSL 106
>pdb|4GP3|A Chain A, The Crystal Structure Of Human Fascin 1 K358a Mutant
pdb|4GP3|B Chain B, The Crystal Structure Of Human Fascin 1 K358a Mutant
Length = 493
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 30 DVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARWGL 88
D G + S + RY+A+ +GN+T CE + DCR ++ RW L
Sbjct: 53 DEAGSAAVCLRSHLGRYLAADKDGNVT--------CEREVPGPDCRFLIVAHDDGRWSL 103
>pdb|4GOY|A Chain A, The Crystal Structure Of Human Fascin 1 K41a Mutant
pdb|4GOY|B Chain B, The Crystal Structure Of Human Fascin 1 K41a Mutant
Length = 493
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 30 DVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARWGL 88
D G + S + RY+A+ +GN+T CE + DCR ++ RW L
Sbjct: 53 DEAGSAAVCLRSHLGRYLAADKDGNVT--------CEREVPGPDCRFLIVAHDDGRWSL 103
>pdb|4GOV|A Chain A, The Crystal Structure Of Human Fascin 1 S39d Mutant
pdb|4GOV|B Chain B, The Crystal Structure Of Human Fascin 1 S39d Mutant
Length = 493
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 30 DVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARWGL 88
D G + S + RY+A+ +GN+T CE + DCR ++ RW L
Sbjct: 53 DEAGSAAVCLRSHLGRYLAADKDGNVT--------CEREVPGPDCRFLIVAHDDGRWSL 103
>pdb|1DFC|A Chain A, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|1DFC|B Chain B, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|3LLP|A Chain A, 1.8 Angstrom Human Fascin 1 Crystal Structure
pdb|3LLP|B Chain B, 1.8 Angstrom Human Fascin 1 Crystal Structure
Length = 493
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 30 DVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARWGL 88
D G + S + RY+A+ +GN+T CE + DCR ++ RW L
Sbjct: 53 DEAGSAAVCLRSHLGRYLAADKDGNVT--------CEREVPGPDCRFLIVAHDDGRWSL 103
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 1 RSSNAETDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIAS 49
R++ + + P +C +C D+ + C H C +CIVRY+ +
Sbjct: 3 RTTRIKITELNPHLMCVLC--GGYFIDATTIIECLHSFCKTCIVRYLET 49
>pdb|1LAT|A Chain A, Glucocorticoid Receptor MutantDNA COMPLEX
pdb|1LAT|B Chain B, Glucocorticoid Receptor MutantDNA COMPLEX
Length = 82
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 86 WGLALCES-------ALVGHKKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQ 134
+G+ CE A+ G + C Y+ +ID+ IR+ NCP CR C+Q
Sbjct: 19 YGVLTCEGCKAFFKRAVEGQHNYLCKYE--GKCIIDK---IRRKNCPACRYRKCLQ 69
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 1 RSSNAETDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIAS 49
R++ + + P +C +C D+ + C H C +CIVRY+ +
Sbjct: 3 RTTRIKITELNPHLMCVLC--GGYFIDATTIIECLHSFCKTCIVRYLET 49
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRY 46
TP +C IC L D+ + C H C SCIVR+
Sbjct: 13 TPYILCSIC--KGYLIDATTITECLHTFCKSCIVRH 46
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 10 GTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEAR 68
G+ +C+IC E+ ++ C H CTSC+ + S+ +G CP CE +
Sbjct: 21 GSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQG------CPFCRCEIK 70
>pdb|3P8Z|A Chain A, Dengue Methyltransferase Bound To A Sam-Based Inhibitor
pdb|3P8Z|C Chain C, Dengue Methyltransferase Bound To A Sam-Based Inhibitor
pdb|3P97|A Chain A, Dengue 3 Ns5 Methyltransferase Bound To The Substrate
S-Adenosyl Methionine
pdb|3P97|C Chain C, Dengue 3 Ns5 Methyltransferase Bound To The Substrate
S-Adenosyl Methionine
Length = 267
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 95 LVGHKKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKVPW 139
+ G FY P + C ++L D GE+ R + ++ PW
Sbjct: 132 MSGKDVFYLPPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPW 176
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 26.2 bits (56), Expect = 7.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 86 WGLALCESALVGHKKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRL 130
WG E + V +K + + + LI G AI +CPH RL
Sbjct: 578 WGRYSVEMSAVVYKDWVFTDQALPADLIKRGMAIEDPSCPHGIRL 622
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 26.2 bits (56), Expect = 7.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 86 WGLALCESALVGHKKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRL 130
WG E + V +K + + + LI G AI +CPH RL
Sbjct: 578 WGRYSVEMSAVVYKDWVFTDQALPADLIKRGMAIEDPSCPHGIRL 622
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 10 GTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEG 53
G+ +C+IC E+ ++ C H CTSC+ + S+ +G
Sbjct: 24 GSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQG 64
>pdb|2XBM|A Chain A, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
pdb|2XBM|B Chain B, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
pdb|2XBM|C Chain C, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
pdb|2XBM|D Chain D, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
Length = 263
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 95 LVGHKKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKVPW 139
+ G FY P + C ++L D GE+ R + ++ PW
Sbjct: 127 MSGKDVFYLPPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPW 171
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 15 VCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEG 53
+C+IC E+ ++ C H CTSC+ + S+ +G
Sbjct: 336 LCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQG 371
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 10 GTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEG 53
G+ +C+IC E+ ++ C H CTSC+ + S+ +G
Sbjct: 329 GSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQG 369
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 15 VCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEG 53
+C+IC E+ ++ C H CTSC+ + S+ +G
Sbjct: 336 LCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQG 371
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 15 VCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEG 53
+C+IC E+ ++ C H CTSC+ + S+ +G
Sbjct: 334 LCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQG 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,501,632
Number of Sequences: 62578
Number of extensions: 158239
Number of successful extensions: 411
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 47
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)