Query 043988
Match_columns 151
No_of_seqs 119 out of 1261
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 17:53:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.9 1.9E-21 6.6E-26 120.4 7.4 87 11-97 3-92 (94)
2 2ct7_A Ring finger protein 31; 99.6 2.5E-18 8.6E-23 104.4 -4.0 69 80-151 4-76 (86)
3 2jmo_A Parkin; IBR, E3 ligase, 99.6 7.3E-18 2.5E-22 100.9 -4.4 70 77-148 2-76 (80)
4 2ct2_A Tripartite motif protei 99.1 6.5E-11 2.2E-15 71.6 5.1 64 8-77 10-74 (88)
5 2djb_A Polycomb group ring fin 99.1 6.1E-11 2.1E-15 69.2 4.6 60 6-76 8-67 (72)
6 4ap4_A E3 ubiquitin ligase RNF 99.1 1.1E-12 3.8E-17 85.3 -3.9 101 11-139 5-109 (133)
7 3hcs_A TNF receptor-associated 99.0 5.2E-10 1.8E-14 75.8 7.3 55 9-74 14-68 (170)
8 2ect_A Ring finger protein 126 99.0 6.9E-11 2.4E-15 70.0 2.4 58 8-74 10-67 (78)
9 2ecv_A Tripartite motif-contai 99.0 3E-10 1E-14 68.1 5.2 61 8-74 14-74 (85)
10 2ysl_A Tripartite motif-contai 99.0 1.4E-10 4.7E-15 67.8 3.6 57 9-74 16-72 (73)
11 2egp_A Tripartite motif-contai 99.0 2.7E-11 9.3E-16 71.9 0.5 65 5-74 4-68 (79)
12 2ecy_A TNF receptor-associated 99.0 3.4E-10 1.1E-14 64.9 4.9 56 8-74 10-65 (66)
13 2kiz_A E3 ubiquitin-protein li 99.0 4.8E-10 1.6E-14 64.7 5.6 57 6-71 7-63 (69)
14 2ysj_A Tripartite motif-contai 99.0 9.2E-10 3.2E-14 62.4 5.7 47 9-62 16-62 (63)
15 3ztg_A E3 ubiquitin-protein li 99.0 4.8E-10 1.6E-14 68.4 4.7 55 5-69 5-60 (92)
16 2ep4_A Ring finger protein 24; 99.0 5.7E-10 1.9E-14 65.3 4.8 54 8-70 10-63 (74)
17 3lrq_A E3 ubiquitin-protein li 99.0 6.3E-10 2.2E-14 69.0 5.1 68 12-89 21-89 (100)
18 2ea6_A Ring finger protein 4; 99.0 4.4E-10 1.5E-14 64.8 3.8 56 6-70 8-67 (69)
19 2ecw_A Tripartite motif-contai 99.0 5.9E-10 2E-14 66.8 4.5 60 9-74 15-74 (85)
20 3ng2_A RNF4, snurf, ring finge 99.0 1.5E-10 5.3E-15 67.2 1.4 58 10-76 7-68 (71)
21 2yur_A Retinoblastoma-binding 98.9 7.4E-10 2.5E-14 64.9 4.1 54 7-69 9-62 (74)
22 2csy_A Zinc finger protein 183 98.9 1.7E-09 5.9E-14 64.4 5.7 52 7-70 9-60 (81)
23 3hct_A TNF receptor-associated 98.9 2.8E-09 9.7E-14 68.0 7.0 85 9-116 14-98 (118)
24 2ecm_A Ring finger and CHY zin 98.9 1.2E-09 4.2E-14 60.1 4.5 50 11-69 3-53 (55)
25 2d8t_A Dactylidin, ring finger 98.9 3.9E-10 1.3E-14 65.6 2.5 56 9-76 11-66 (71)
26 2yu4_A E3 SUMO-protein ligase 98.9 2E-09 6.9E-14 66.0 5.6 61 11-74 5-66 (94)
27 1rmd_A RAG1; V(D)J recombinati 98.9 1.5E-09 5.2E-14 69.0 5.2 82 12-115 22-103 (116)
28 1e4u_A Transcriptional repress 98.9 6.1E-10 2.1E-14 66.0 3.0 58 9-74 7-65 (78)
29 1t1h_A Gspef-atpub14, armadill 98.9 9E-10 3.1E-14 65.1 3.8 66 11-87 6-72 (78)
30 2y43_A E3 ubiquitin-protein li 98.9 1.9E-10 6.4E-15 71.2 0.5 68 12-90 21-89 (99)
31 2xeu_A Ring finger protein 4; 98.9 4.6E-10 1.6E-14 63.7 1.7 56 12-76 2-61 (64)
32 1jm7_A BRCA1, breast cancer ty 98.9 6.3E-09 2.1E-13 65.6 6.4 70 12-90 20-90 (112)
33 1g25_A CDK-activating kinase a 98.8 6E-10 2E-14 63.6 0.8 58 13-78 3-62 (65)
34 1x4j_A Ring finger protein 38; 98.8 3E-09 1E-13 62.4 3.6 52 11-71 21-72 (75)
35 3knv_A TNF receptor-associated 98.8 1.2E-10 4.3E-15 76.6 -2.8 92 10-115 28-119 (141)
36 2ecj_A Tripartite motif-contai 98.8 4.5E-09 1.5E-13 58.4 3.7 48 8-62 10-57 (58)
37 1iym_A EL5; ring-H2 finger, ub 98.8 2.4E-09 8.3E-14 58.9 1.7 50 12-70 4-54 (55)
38 2ckl_A Polycomb group ring fin 98.7 1.2E-09 4.2E-14 68.6 0.3 56 5-71 7-62 (108)
39 2l0b_A E3 ubiquitin-protein li 98.7 6.9E-09 2.4E-13 63.2 3.3 52 11-71 38-89 (91)
40 2kr4_A Ubiquitin conjugation f 98.7 3E-08 1E-12 59.6 6.1 53 10-74 11-63 (85)
41 3l11_A E3 ubiquitin-protein li 98.7 1.1E-09 3.7E-14 69.6 -0.6 52 9-71 11-62 (115)
42 3htk_C E3 SUMO-protein ligase 98.7 1.2E-08 4.1E-13 72.9 3.9 74 10-90 178-252 (267)
43 3fl2_A E3 ubiquitin-protein li 98.6 1.6E-08 5.6E-13 64.9 3.3 48 13-71 52-99 (124)
44 1chc_A Equine herpes virus-1 r 98.6 2.7E-08 9.2E-13 57.1 3.8 48 12-70 4-51 (68)
45 1jm7_B BARD1, BRCA1-associated 98.6 6.2E-09 2.1E-13 66.3 0.5 65 12-89 21-86 (117)
46 1v87_A Deltex protein 2; ring- 98.6 9.7E-08 3.3E-12 60.3 5.7 56 12-71 24-94 (114)
47 1bor_A Transcription factor PM 98.6 9.5E-09 3.3E-13 56.9 0.8 47 10-71 3-49 (56)
48 2ecn_A Ring finger protein 141 98.6 3.2E-09 1.1E-13 61.4 -1.3 51 9-72 11-61 (70)
49 1wgm_A Ubiquitin conjugation f 98.6 5.6E-08 1.9E-12 59.9 4.0 51 12-74 21-72 (98)
50 1z6u_A NP95-like ring finger p 98.6 2.7E-08 9.2E-13 66.1 2.6 50 12-72 77-126 (150)
51 2ckl_B Ubiquitin ligase protei 98.5 3.4E-08 1.2E-12 66.5 2.3 49 12-70 53-101 (165)
52 4ayc_A E3 ubiquitin-protein li 98.5 3.5E-08 1.2E-12 64.6 2.0 47 13-71 53-99 (138)
53 2kre_A Ubiquitin conjugation f 98.5 7.3E-08 2.5E-12 59.6 3.1 51 12-74 28-78 (100)
54 2ecl_A Ring-box protein 2; RNF 98.3 2E-07 7E-12 55.3 2.2 54 11-73 13-78 (81)
55 2c2l_A CHIP, carboxy terminus 98.3 5.8E-07 2E-11 65.0 4.4 53 11-74 206-258 (281)
56 4ap4_A E3 ubiquitin ligase RNF 98.2 4.2E-07 1.4E-11 58.6 2.1 57 11-76 70-130 (133)
57 2d8s_A Cellular modulator of i 98.2 3.3E-06 1.1E-10 50.0 5.5 54 11-72 13-71 (80)
58 2ea5_A Cell growth regulator w 98.1 2.6E-06 9.1E-11 48.8 4.1 47 9-71 11-58 (68)
59 1wd2_A Ariadne-1 protein homol 98.1 1.7E-06 5.7E-11 48.3 2.9 49 99-150 5-59 (60)
60 2f42_A STIP1 homology and U-bo 98.1 3.4E-06 1.2E-10 57.3 4.3 53 11-74 104-156 (179)
61 4ic3_A E3 ubiquitin-protein li 98.0 2E-06 6.9E-11 50.1 2.3 42 13-70 24-66 (74)
62 2ecg_A Baculoviral IAP repeat- 98.0 5E-06 1.7E-10 48.4 3.0 43 13-71 25-68 (75)
63 2y1n_A E3 ubiquitin-protein li 97.9 1E-05 3.5E-10 61.1 4.5 50 13-73 332-381 (389)
64 3dpl_R Ring-box protein 1; ubi 97.9 4.6E-06 1.6E-10 52.0 1.8 49 14-71 38-101 (106)
65 2vje_B MDM4 protein; proto-onc 97.8 3.6E-06 1.2E-10 47.4 1.0 50 11-70 5-55 (63)
66 2vje_A E3 ubiquitin-protein li 97.7 7.3E-06 2.5E-10 46.3 1.2 48 12-70 7-56 (64)
67 2yho_A E3 ubiquitin-protein li 97.6 1.6E-05 5.5E-10 46.8 1.6 43 13-71 18-61 (79)
68 4a0k_B E3 ubiquitin-protein li 97.6 1.2E-05 4E-10 51.0 0.5 50 14-72 49-113 (117)
69 2bay_A PRE-mRNA splicing facto 97.2 0.00059 2E-08 37.9 4.1 52 13-75 3-54 (61)
70 3t6p_A Baculoviral IAP repeat- 97.1 0.00013 4.5E-09 54.5 1.2 42 13-70 295-337 (345)
71 2ct0_A Non-SMC element 1 homol 97.1 0.00034 1.2E-08 40.5 2.5 51 11-70 13-63 (74)
72 2cs3_A Protein C14ORF4, MY039 97.0 0.0022 7.4E-08 37.2 5.7 60 5-66 7-68 (93)
73 3k1l_B Fancl; UBC, ring, RWD, 97.0 0.001 3.4E-08 49.5 4.8 63 9-73 304-375 (381)
74 3vk6_A E3 ubiquitin-protein li 96.7 0.0012 4.2E-08 40.1 3.0 46 15-70 3-48 (101)
75 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.003 1E-07 38.5 2.6 28 118-145 68-96 (101)
76 1vyx_A ORF K3, K3RING; zinc-bi 95.9 0.018 6E-07 31.7 4.6 50 11-70 4-58 (60)
77 3hcs_A TNF receptor-associated 91.1 0.19 6.5E-06 33.2 3.4 86 15-132 55-148 (170)
78 3nw0_A Non-structural maintena 91.0 0.13 4.6E-06 36.2 2.6 52 12-72 179-230 (238)
79 2lbm_A Transcriptional regulat 87.4 3.8 0.00013 26.4 7.3 77 7-90 57-137 (142)
80 2d8v_A Zinc finger FYVE domain 86.1 0.51 1.7E-05 26.2 2.2 36 9-48 4-40 (67)
81 3qt1_I DNA-directed RNA polyme 84.3 0.54 1.9E-05 30.1 2.1 32 98-131 22-56 (133)
82 1fre_A Nuclear factor XNF7; zi 82.8 0.74 2.5E-05 22.7 1.9 27 118-144 11-38 (42)
83 1z60_A TFIIH basal transcripti 82.7 0.15 5E-06 27.9 -0.9 36 102-143 17-52 (59)
84 3iz6_X 40S ribosomal protein S 77.9 1.1 3.6E-05 26.3 1.6 32 101-134 37-68 (86)
85 1weo_A Cellulose synthase, cat 77.8 4.2 0.00014 24.0 4.1 51 12-70 15-69 (93)
86 2hu9_A MERP, mercuric transpor 77.8 2.3 7.7E-05 27.0 3.3 45 58-114 2-49 (130)
87 3h0g_I DNA-directed RNA polyme 77.3 0.87 3E-05 28.2 1.2 29 101-131 5-36 (113)
88 2jrp_A Putative cytoplasmic pr 77.1 0.96 3.3E-05 26.3 1.3 8 107-114 7-14 (81)
89 2k16_A Transcription initiatio 76.7 2.3 7.9E-05 23.9 2.9 36 9-44 14-49 (75)
90 2yvr_A Transcription intermedi 76.5 0.29 1E-05 25.3 -1.0 30 117-146 14-43 (50)
91 3lqh_A Histone-lysine N-methyl 75.9 0.93 3.2E-05 30.6 1.1 72 14-88 3-82 (183)
92 1wep_A PHF8; structural genomi 75.0 3.7 0.00013 23.4 3.4 66 3-73 2-68 (79)
93 2ko5_A Ring finger protein Z; 74.7 1.1 3.8E-05 26.8 1.1 49 11-72 26-74 (99)
94 1wem_A Death associated transc 74.2 4.4 0.00015 22.9 3.6 34 11-45 14-47 (76)
95 2o35_A Hypothetical protein DU 73.8 2.2 7.4E-05 25.7 2.2 16 38-53 43-58 (105)
96 3j20_Y 30S ribosomal protein S 73.4 1.2 4.1E-05 23.3 0.9 28 100-130 19-46 (50)
97 2xzm_6 RPS27E; ribosome, trans 72.6 0.86 2.9E-05 26.4 0.3 31 101-133 33-63 (81)
98 3fyb_A Protein of unknown func 70.5 2 6.8E-05 25.8 1.5 17 37-53 41-57 (104)
99 2kdx_A HYPA, hydrogenase/ureas 70.2 9.2 0.00032 23.5 4.7 26 100-130 73-99 (119)
100 1vq8_Z 50S ribosomal protein L 69.6 1.2 4.2E-05 25.9 0.5 32 99-133 26-57 (83)
101 1qxf_A GR2, 30S ribosomal prot 69.3 2 6.8E-05 23.8 1.3 31 101-133 8-38 (66)
102 1twf_I B12.6, DNA-directed RNA 69.2 1.3 4.3E-05 27.8 0.5 30 100-131 4-36 (122)
103 3ql9_A Transcriptional regulat 68.4 9.3 0.00032 24.2 4.4 54 6-62 50-107 (129)
104 2did_A Tripartite motif protei 67.5 0.88 3E-05 23.8 -0.4 28 118-145 16-44 (53)
105 1pft_A TFIIB, PFTFIIBN; N-term 67.1 1.9 6.5E-05 22.3 0.9 29 100-131 5-34 (50)
106 3j20_W 30S ribosomal protein S 66.5 2.5 8.7E-05 23.2 1.3 31 101-133 16-46 (63)
107 3mjh_B Early endosome antigen 65.7 1.8 6.3E-05 20.7 0.6 14 12-25 4-17 (34)
108 3ddt_A E3 ubiquitin-protein li 65.4 0.67 2.3E-05 23.7 -1.1 28 118-145 15-43 (48)
109 3pwf_A Rubrerythrin; non heme 64.5 7.5 0.00026 25.7 3.6 23 101-129 139-161 (170)
110 2yw8_A RUN and FYVE domain-con 63.9 3.4 0.00011 23.8 1.6 36 97-137 16-51 (82)
111 2vpb_A Hpygo1, pygopus homolog 63.6 5.8 0.0002 21.8 2.5 35 10-44 5-41 (65)
112 2yrg_A Tripartite motif-contai 63.0 1.3 4.3E-05 23.9 -0.4 29 117-145 21-50 (59)
113 1x4s_A Protein FON, zinc finge 62.9 9.8 0.00034 20.6 3.2 36 11-46 9-45 (59)
114 2csv_A Tripartite motif protei 62.5 1.5 5.2E-05 24.5 -0.1 30 117-146 25-54 (72)
115 2k4x_A 30S ribosomal protein S 62.3 2.7 9.2E-05 22.4 0.9 29 100-131 18-46 (55)
116 3u5c_b RP61, YS20, 40S ribosom 61.0 4.1 0.00014 23.6 1.6 31 101-133 35-65 (82)
117 2dja_A Midline-2; tripartite m 60.4 1 3.5E-05 25.9 -1.1 28 118-145 27-55 (84)
118 1zbd_B Rabphilin-3A; G protein 60.1 4 0.00014 26.0 1.6 31 12-42 54-86 (134)
119 1z2q_A LM5-1; membrane protein 60.0 7.3 0.00025 22.5 2.6 34 12-45 20-54 (84)
120 1x4v_A Hypothetical protein LO 59.4 3.1 0.0001 22.9 0.8 32 101-138 13-44 (63)
121 2d8u_A Ubiquitin ligase TRIM63 58.9 1.3 4.3E-05 24.1 -0.9 29 117-145 16-45 (64)
122 3v43_A Histone acetyltransfera 58.9 20 0.00067 21.8 4.6 49 12-62 4-60 (112)
123 1joc_A EEA1, early endosomal a 58.5 7.1 0.00024 24.4 2.5 33 100-137 69-101 (125)
124 2zjr_Z 50S ribosomal protein L 58.4 5.3 0.00018 21.7 1.7 27 96-130 26-52 (60)
125 3u5c_f 40S ribosomal protein S 58.0 2.7 9.2E-05 27.4 0.5 32 101-133 119-150 (152)
126 2ffw_A Midline-1; B-BOX, ring 57.7 9.5 0.00032 21.6 2.8 34 12-45 29-62 (78)
127 1wfk_A Zinc finger, FYVE domai 56.9 8 0.00027 22.6 2.4 34 12-45 8-42 (88)
128 1wys_A Riken cDNA 2310008M20 p 56.2 3.9 0.00013 23.3 0.9 42 101-150 15-56 (75)
129 2zet_C Melanophilin; complex, 55.9 6.4 0.00022 25.7 2.0 32 12-43 67-100 (153)
130 3v2d_5 50S ribosomal protein L 55.8 5.5 0.00019 21.6 1.4 27 96-130 26-52 (60)
131 3a1b_A DNA (cytosine-5)-methyl 55.7 8.5 0.00029 25.3 2.6 40 6-48 72-113 (159)
132 2csz_A Synaptotagmin-like prot 55.5 11 0.00038 21.5 2.7 33 10-42 22-56 (76)
133 2ri7_A Nucleosome-remodeling f 55.1 6.2 0.00021 25.9 1.9 76 10-90 5-81 (174)
134 3t7l_A Zinc finger FYVE domain 54.5 8.5 0.00029 22.5 2.3 32 14-45 21-53 (90)
135 3o70_A PHD finger protein 13; 54.4 7 0.00024 21.6 1.8 36 8-44 14-49 (68)
136 1vfy_A Phosphatidylinositol-3- 53.6 8.1 0.00028 21.6 2.0 31 14-44 12-43 (73)
137 3a43_A HYPD, hydrogenase nicke 53.5 23 0.00077 22.5 4.4 14 100-115 70-83 (139)
138 1x4u_A Zinc finger, FYVE domai 53.0 14 0.00048 21.2 3.0 35 10-44 11-46 (84)
139 1wfe_A Riken cDNA 2310008M20 p 51.9 4.9 0.00017 23.5 0.9 33 101-139 26-58 (86)
140 1we9_A PHD finger family prote 50.3 8.1 0.00028 20.8 1.6 35 10-44 3-38 (64)
141 2yqq_A Zinc finger HIT domain- 50.0 28 0.00095 18.5 4.3 39 7-49 6-45 (56)
142 2lri_C Autoimmune regulator; Z 49.4 23 0.00078 19.4 3.4 51 9-67 8-58 (66)
143 2akl_A PHNA-like protein PA012 48.7 4.3 0.00015 25.7 0.3 26 102-131 29-54 (138)
144 2jne_A Hypothetical protein YF 48.4 4.9 0.00017 24.1 0.5 32 101-137 33-69 (101)
145 3na7_A HP0958; flagellar bioge 48.2 16 0.00054 25.7 3.3 57 73-131 168-232 (256)
146 1f62_A Transcription factor WS 47.2 18 0.0006 18.4 2.6 31 15-45 2-32 (51)
147 2pv0_B DNA (cytosine-5)-methyl 46.1 20 0.0007 27.0 3.7 39 6-47 86-126 (386)
148 1wg2_A Zinc finger (AN1-like) 44.0 24 0.00081 19.4 2.8 30 10-41 12-41 (64)
149 2e6r_A Jumonji/ARID domain-con 42.9 9.2 0.00031 22.5 1.1 34 11-44 14-47 (92)
150 2k5c_A Uncharacterized protein 41.6 8.1 0.00028 22.3 0.7 47 58-114 9-63 (95)
151 1x61_A Thyroid receptor intera 40.9 28 0.00096 18.7 3.0 32 14-47 34-65 (72)
152 1y02_A CARP2, FYVE-ring finger 40.6 9.3 0.00032 23.8 0.9 32 101-137 20-51 (120)
153 2jr6_A UPF0434 protein NMA0874 40.6 7.7 0.00026 21.6 0.5 30 99-131 7-36 (68)
154 1wew_A DNA-binding family prot 40.6 39 0.0013 18.9 3.6 33 11-44 14-48 (78)
155 2yww_A Aspartate carbamoyltran 40.2 6 0.0002 25.7 0.0 32 100-131 105-143 (149)
156 2l43_A N-teminal domain from h 40.2 23 0.0008 20.5 2.6 35 11-45 23-59 (88)
157 2ku3_A Bromodomain-containing 39.5 31 0.0011 19.1 3.0 37 8-44 11-49 (71)
158 2lvu_A Zinc finger and BTB dom 45.4 6.3 0.00022 15.9 0.0 13 122-134 3-15 (26)
159 2js4_A UPF0434 protein BB2007; 38.9 8.1 0.00028 21.6 0.4 29 100-131 8-36 (70)
160 1wee_A PHD finger family prote 38.2 24 0.00081 19.5 2.4 35 9-44 12-47 (72)
161 2k2d_A Ring finger and CHY zin 38.0 14 0.00047 21.2 1.3 27 101-130 38-64 (79)
162 1dl6_A Transcription factor II 37.7 17 0.0006 19.3 1.6 27 101-130 12-39 (58)
163 1bbo_A Human enhancer-binding 37.3 13 0.00045 18.5 1.1 9 122-130 30-38 (57)
164 1nc8_A Nucleocapsid protein; H 37.2 6.4 0.00022 17.7 -0.2 18 131-148 8-25 (29)
165 2hf1_A Tetraacyldisaccharide-1 36.9 7.9 0.00027 21.5 0.2 29 100-131 8-36 (68)
166 1dvp_A HRS, hepatocyte growth 36.9 16 0.00053 25.1 1.7 33 13-45 161-194 (220)
167 2epu_A Zinc finger protein 32; 36.8 20 0.0007 16.8 1.8 20 4-23 3-22 (45)
168 1lko_A Rubrerythrin all-iron(I 35.6 23 0.00079 23.7 2.4 24 101-129 156-179 (191)
169 2gmg_A Hypothetical protein PF 35.6 44 0.0015 20.2 3.3 62 66-131 22-94 (105)
170 2xb1_A Pygopus homolog 2, B-ce 35.5 20 0.00069 21.6 1.9 54 12-67 2-60 (105)
171 2pk7_A Uncharacterized protein 35.4 8.5 0.00029 21.5 0.1 29 100-131 8-36 (69)
172 4gzn_C ZFP-57, zinc finger pro 35.1 10 0.00035 20.1 0.5 13 119-131 30-42 (60)
173 2dlk_A Novel protein; ZF-C2H2 34.5 13 0.00044 20.1 0.8 63 56-131 6-78 (79)
174 4ayb_P DNA-directed RNA polyme 34.4 25 0.00084 18.0 1.8 28 102-131 5-33 (48)
175 2i13_A AART; DNA binding, zinc 34.3 91 0.0031 19.9 6.4 57 10-70 18-88 (190)
176 2jp9_A Wilms tumor 1; DNA bind 34.1 51 0.0018 19.0 3.7 13 57-69 6-18 (119)
177 4fyy_B Aspartate carbamoyltran 34.1 8.6 0.00029 25.1 0.0 32 100-131 106-145 (153)
178 1dsq_A Nucleic acid binding pr 34.1 15 0.00052 15.9 0.9 18 131-148 4-21 (26)
179 1znf_A 31ST zinc finger from X 33.7 9.8 0.00033 15.3 0.2 9 123-131 3-11 (27)
180 1twf_L ABC10-alpha, DNA-direct 33.7 32 0.0011 19.1 2.4 9 57-67 45-53 (70)
181 1ard_A Yeast transcription fac 33.5 9.8 0.00034 15.6 0.2 10 122-131 3-12 (29)
182 2be7_D Aspartate carbamoyltran 33.4 7.9 0.00027 25.2 -0.3 32 100-131 105-144 (153)
183 3zyq_A Hepatocyte growth facto 33.2 16 0.00053 25.3 1.2 28 107-137 169-196 (226)
184 2cur_A Skeletal muscle LIM-pro 32.8 37 0.0013 18.0 2.6 31 14-46 32-62 (69)
185 2adr_A ADR1; transcription reg 32.5 18 0.0006 18.3 1.2 10 122-131 31-40 (60)
186 2jx1_A Myelin transcription fa 32.5 23 0.00079 16.4 1.3 11 58-68 2-12 (31)
187 2kvh_A Zinc finger and BTB dom 32.1 8.6 0.00029 15.6 -0.2 10 122-131 4-13 (27)
188 1x6a_A LIMK-2, LIM domain kina 32.0 50 0.0017 18.2 3.1 34 14-47 42-75 (81)
189 1gh9_A 8.3 kDa protein (gene M 31.8 11 0.00039 21.1 0.3 25 101-130 5-29 (71)
190 4dgl_A Casein kinase II subuni 31.6 55 0.0019 22.5 3.7 28 102-129 108-142 (215)
191 1vd4_A Transcription initiatio 31.5 17 0.00057 18.9 0.9 32 100-133 14-51 (62)
192 2lvt_A Zinc finger and BTB dom 37.7 10 0.00034 15.7 0.0 13 122-134 3-15 (29)
193 1nyp_A Pinch protein; LIM doma 31.5 27 0.00094 18.4 1.9 31 14-46 32-62 (66)
194 3vhs_A ATPase wrnip1; zinc fin 31.5 8 0.00027 17.0 -0.3 22 56-79 5-26 (29)
195 2kfq_A FP1; protein, de novo p 31.3 14 0.00047 15.9 0.5 19 122-140 3-21 (32)
196 2yt5_A Metal-response element- 31.2 21 0.0007 19.2 1.3 37 11-47 4-42 (66)
197 2d8z_A Four and A half LIM dom 30.7 38 0.0013 18.0 2.4 31 14-46 32-62 (70)
198 1paa_A Yeast transcription fac 30.6 12 0.0004 15.5 0.2 10 122-131 3-12 (30)
199 2jny_A Uncharacterized BCR; st 30.3 14 0.00047 20.5 0.4 29 100-131 10-38 (67)
200 2m0e_A Zinc finger and BTB dom 30.0 12 0.0004 15.2 0.1 11 122-132 3-13 (29)
201 2lvr_A Zinc finger and BTB dom 36.1 11 0.00038 15.5 0.0 14 122-135 4-17 (30)
202 2epr_A POZ-, at HOOK-, and zin 29.8 32 0.0011 16.4 1.8 20 4-23 3-22 (48)
203 2kvf_A Zinc finger and BTB dom 29.8 12 0.00041 15.2 0.1 10 122-131 4-13 (28)
204 1loi_A Cyclic 3',5'-AMP specif 29.7 20 0.0007 15.2 0.8 10 131-140 7-16 (26)
205 3uk3_C Zinc finger protein 217 29.6 15 0.0005 18.3 0.5 10 122-131 33-42 (57)
206 2jvx_A NF-kappa-B essential mo 29.5 23 0.00079 15.9 1.1 14 12-25 2-15 (28)
207 1f2i_G Fusion of N-terminal 17 29.4 19 0.00067 19.0 1.0 32 100-131 19-59 (73)
208 2yre_A F-box only protein 30; 29.4 1.5 5.3E-05 26.5 -3.8 40 35-75 13-54 (100)
209 2d8x_A Protein pinch; LIM doma 29.3 45 0.0015 17.7 2.6 32 14-47 32-63 (70)
210 2lv2_A Insulinoma-associated p 29.2 19 0.00063 20.6 0.9 29 101-131 29-66 (85)
211 2eps_A POZ-, at HOOK-, and zin 29.1 33 0.0011 16.9 1.9 51 3-70 2-52 (54)
212 2ep0_A Zinc finger protein 28 28.9 36 0.0012 15.9 1.9 19 5-23 4-22 (46)
213 1rik_A E6APC1 peptide; E6-bind 28.7 11 0.00036 15.5 -0.2 10 122-131 3-12 (29)
214 4esj_A Type-2 restriction enzy 28.3 17 0.00059 25.5 0.7 30 100-131 34-66 (257)
215 2lv9_A Histone-lysine N-methyl 28.3 40 0.0014 19.9 2.3 48 12-66 27-74 (98)
216 2dar_A PDZ and LIM domain prot 28.3 45 0.0015 18.9 2.5 11 35-45 71-81 (90)
217 1klr_A Zinc finger Y-chromosom 28.1 13 0.00045 15.2 0.1 10 122-131 3-12 (30)
218 1p7a_A BF3, BKLF, kruppel-like 27.9 18 0.00062 15.9 0.6 12 120-131 10-21 (37)
219 6rxn_A Rubredoxin; electron tr 27.8 39 0.0013 17.1 1.9 27 101-129 5-38 (46)
220 3i2d_A E3 SUMO-protein ligase 26.7 96 0.0033 23.2 4.5 56 13-75 249-304 (371)
221 1x5w_A Zinc finger protein 64, 26.7 34 0.0012 17.8 1.7 12 120-131 36-47 (70)
222 2lce_A B-cell lymphoma 6 prote 26.4 29 0.001 18.4 1.4 30 100-131 17-55 (74)
223 2m0f_A Zinc finger and BTB dom 26.1 13 0.00043 15.1 -0.2 10 122-131 3-12 (29)
224 2bl6_A Nucleocapsid protein P1 26.1 24 0.00081 16.6 0.8 14 132-145 3-16 (37)
225 2m0d_A Zinc finger and BTB dom 26.1 13 0.00043 15.2 -0.2 10 122-131 4-13 (30)
226 2egm_A Tripartite motif-contai 25.9 1.7 5.9E-05 23.1 -3.8 28 117-144 25-53 (57)
227 2kvg_A Zinc finger and BTB dom 25.8 8.8 0.0003 15.7 -0.8 10 122-131 4-13 (27)
228 3m7n_A Putative uncharacterize 25.7 28 0.00096 23.0 1.4 24 102-130 142-165 (179)
229 1qf8_A Casein kinase II; casei 25.6 1.1E+02 0.0037 20.5 4.2 28 102-129 108-142 (182)
230 2lcq_A Putative toxin VAPC6; P 25.5 29 0.00098 22.4 1.4 24 102-130 134-157 (165)
231 2iyb_E Testin, TESS, TES; LIM 25.2 31 0.001 18.2 1.3 30 14-45 33-63 (65)
232 2elx_A Zinc finger protein 406 25.0 17 0.00059 15.6 0.2 12 120-131 6-17 (35)
233 1wvk_A AT2G23090/F21P24.15; st 24.8 35 0.0012 19.9 1.5 16 8-23 40-55 (86)
234 1x3h_A Leupaxin; paxillin fami 24.7 75 0.0026 17.3 3.0 31 14-46 42-72 (80)
235 1wyh_A SLIM 2, skeletal muscle 24.3 44 0.0015 17.8 1.9 30 14-45 34-63 (72)
236 1wfh_A Zinc finger (AN1-like) 24.1 83 0.0029 17.2 2.9 29 11-41 13-41 (64)
237 2yuc_A TNF receptor-associated 24.0 27 0.00092 19.1 1.0 22 56-78 15-36 (76)
238 1yuz_A Nigerythrin; rubrythrin 24.0 80 0.0028 21.3 3.5 24 100-129 171-194 (202)
239 1rim_A E6APC2 peptide; E6-bind 23.7 18 0.0006 15.7 0.1 10 122-131 3-12 (33)
240 1x4w_A Hypothetical protein FL 23.6 20 0.00067 19.9 0.3 32 9-41 11-44 (67)
241 2k5r_A Uncharacterized protein 23.5 1.1E+02 0.0039 18.1 3.7 13 57-71 8-20 (97)
242 2ysm_A Myeloid/lymphoid or mix 23.5 45 0.0016 19.9 2.0 35 12-46 6-40 (111)
243 2i5o_A DNA polymerase ETA; zin 23.4 17 0.00057 17.8 -0.1 22 56-79 8-29 (39)
244 1pg5_B Aspartate carbamoyltran 23.3 19 0.00066 23.8 0.2 32 100-131 114-153 (168)
245 1x4l_A Skeletal muscle LIM-pro 22.9 55 0.0019 17.5 2.1 30 14-45 36-65 (72)
246 1x64_A Alpha-actinin-2 associa 22.7 44 0.0015 18.9 1.8 12 13-24 25-36 (89)
247 2cot_A Zinc finger protein 435 22.4 42 0.0014 17.8 1.6 12 120-131 45-56 (77)
248 1jjd_A Metallothionein, SMTA; 22.3 43 0.0015 17.7 1.5 32 13-46 7-39 (55)
249 3h0g_L DNA-directed RNA polyme 22.2 63 0.0022 17.6 2.2 11 57-69 38-48 (63)
250 1qyp_A RNA polymerase II; tran 22.1 19 0.00063 18.9 -0.0 8 101-110 16-23 (57)
251 2elt_A Zinc finger protein 406 22.0 49 0.0017 14.1 1.6 15 9-23 5-19 (36)
252 2xjy_A Rhombotin-2; oncoprotei 21.9 65 0.0022 19.5 2.6 35 14-49 95-129 (131)
253 2elp_A Zinc finger protein 406 21.9 22 0.00074 15.7 0.2 12 120-131 8-19 (37)
254 1x4k_A Skeletal muscle LIM-pro 21.9 46 0.0016 17.7 1.6 31 14-46 34-64 (72)
255 2drp_A Protein (tramtrack DNA- 21.4 37 0.0013 17.4 1.1 13 119-131 38-50 (66)
256 2cuq_A Four and A half LIM dom 21.4 68 0.0023 17.5 2.4 31 14-46 42-72 (80)
257 2el6_A Zinc finger protein 268 21.4 62 0.0021 15.0 2.0 16 8-23 7-22 (46)
258 1wig_A KIAA1808 protein; LIM d 21.2 40 0.0014 18.3 1.3 31 14-45 32-62 (73)
259 2elm_A Zinc finger protein 406 21.2 21 0.0007 15.9 0.0 12 120-131 8-19 (37)
260 3mpx_A FYVE, rhogef and PH dom 21.0 20 0.0007 26.9 0.0 36 13-48 375-411 (434)
261 2ytb_A Zinc finger protein 32; 20.9 29 0.00099 15.7 0.6 14 119-132 9-22 (42)
262 2egq_A FHL1 protein; LIM domai 20.9 67 0.0023 17.3 2.2 29 14-44 47-75 (77)
263 2enh_A Zinc finger protein 28 20.9 61 0.0021 15.0 1.9 16 8-23 7-22 (46)
264 2els_A Zinc finger protein 406 20.6 56 0.0019 14.0 1.6 14 10-23 6-19 (36)
265 2yt9_A Zinc finger-containing 20.5 1.2E+02 0.004 16.5 5.5 60 10-71 4-77 (95)
266 2cu8_A Cysteine-rich protein 2 20.4 50 0.0017 17.9 1.6 30 14-45 37-67 (76)
267 2ct1_A Transcriptional repress 20.4 40 0.0014 18.0 1.2 12 120-131 44-55 (77)
268 1wev_A Riken cDNA 1110020M19; 20.3 17 0.00058 21.1 -0.5 36 13-48 16-53 (88)
269 4fo9_A E3 SUMO-protein ligase 20.2 1.1E+02 0.0037 22.9 3.7 56 13-75 215-270 (360)
270 3k7a_M Transcription initiatio 20.1 62 0.0021 23.7 2.4 30 98-130 19-51 (345)
271 2eos_A B-cell lymphoma 6 prote 20.1 33 0.0011 15.6 0.7 14 119-132 9-22 (42)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.85 E-value=1.9e-21 Score=120.41 Aligned_cols=87 Identities=20% Similarity=0.474 Sum_probs=77.9
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCc-cccCCCCCCCCCc--cChhHHhhcCCHHHHHHHH
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNI-TNISCPQLGCEAR--LEFEDCRLILPDDVFARWG 87 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~-~~i~CP~~~C~~~--~~~~~i~~~l~~~~~~~~~ 87 (151)
...++|+||++++..++++.+.+|||.||++||..|+..+|.++. .+++||..+|+.. ++.+.++.+|+++++++|+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 82 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence 457899999999988888877689999999999999999998764 5799998889999 9999999999999999999
Q ss_pred HHHHhhhhcC
Q 043988 88 LALCESALVG 97 (151)
Q Consensus 88 ~~~~~~~~~~ 97 (151)
+++++.++..
T Consensus 83 ~~~~~~~v~~ 92 (94)
T 1wim_A 83 KLQFERSGPS 92 (94)
T ss_dssp HHHHHSSCSS
T ss_pred HHHHHhhhcc
Confidence 9999887754
No 2
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.63 E-value=2.5e-18 Score=104.38 Aligned_cols=69 Identities=35% Similarity=0.717 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhhhcCC-CeeecCcccCCccccccccccCcccCcccchhhhhcCCCCC---CCCCCchhhhhC
Q 043988 80 DDVFARWGLALCESALVGH-KKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKVPW---HSEFDCSQFQKL 151 (151)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~---H~~~~C~~~~~~ 151 (151)
++++++|++++.+.+|... +.+||| +|+.+++.+.. ...+.||.|++.||+.|+.+| |.|++|++|++|
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~-~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w 76 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE-QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNW 76 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS-CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC-CCceEeCCCCCccccccCCchhhcCCCCChHHHHHH
Confidence 3567788888888888765 456999 99998887653 677999999999999999999 999999999998
No 3
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.60 E-value=7.3e-18 Score=100.86 Aligned_cols=70 Identities=26% Similarity=0.569 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHhhhhcCCCeeecCcccCCccccccccccCcccCc-----ccchhhhhcCCCCCCCCCCchhh
Q 043988 77 ILPDDVFARWGLALCESALVGHKKFYCPYKDCSSMLIDEGEAIRKSNCP-----HCRRLFCVQCKVPWHSEFDCSQF 148 (151)
Q Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~C~-----~C~~~~C~~C~~~~H~~~~C~~~ 148 (151)
+|+++++++|++++++.++..++.+|||+|+|+.++..+. +...+.|+ .|++.||+.|+.+||. .+|++.
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~-~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEP-DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCS-CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECC-CCCcCCCCCCCCCCCCCeeccccCccccC-Cccccc
Confidence 6788899999999999999877788999999999998865 56779998 9999999999999999 999864
No 4
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=6.5e-11 Score=71.62 Aligned_cols=64 Identities=25% Similarity=0.503 Sum_probs=47.6
Q ss_pred CCCCCeeecccccccCCCCCc-eecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhhc
Q 043988 8 DDGTPSFVCEICVESRSLYDS-FDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLI 77 (151)
Q Consensus 8 ~~~~~~~~C~iC~~~~~~~~~-~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~~ 77 (151)
+.....++|+||++.+...+. +..+.|||.||..|+..|++.. ...+.|| .|...+...++..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP--~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS----INGVRCP--FCSKITRITSLTQL 74 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC----SSCBCCT--TTCCCBCCSSTTTS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC----CCCcCCC--CCCCcccchhHHHH
Confidence 444667899999998865442 4445899999999999998764 1257999 68888777665544
No 5
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=6.1e-11 Score=69.24 Aligned_cols=60 Identities=28% Similarity=0.528 Sum_probs=45.7
Q ss_pred ccCCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhh
Q 043988 6 ETDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRL 76 (151)
Q Consensus 6 ~~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~ 76 (151)
..++....+.|+||++.+. +++.+..|||.||..|+..|+.. ...|| .|...+...++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY-------SNRCP--KCNIVVHQTQPLS 67 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH-------CSSCT--TTCCCCCSSCSCC
T ss_pred hHhhcCCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc-------CCcCC--CcCcccCcccccc
Confidence 3344566789999998774 45555589999999999999965 36899 6988887765543
No 6
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=1.1e-12 Score=85.29 Aligned_cols=101 Identities=22% Similarity=0.520 Sum_probs=66.4
Q ss_pred CCeeecccccccCCCC----CceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhhcCCHHHHHHH
Q 043988 11 TPSFVCEICVESRSLY----DSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARW 86 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~~ 86 (151)
...++|+||++.+..+ +....+.|||.||.+|+..|++.. ..|| .|...+....+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~~~~l~~l~-------- 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCP--TCRKKINHKRYHPIY-------- 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-------SBCT--TTCCBCTTTCEEECB--------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-------CCCC--CCCCcCccccccccc--------
Confidence 3467999999887532 223445899999999999998642 4899 699888777664431
Q ss_pred HHHHHhhhhcCCCeeecCcccCCccccccccccCcccCcccchhhhhcCCCCC
Q 043988 87 GLALCESALVGHKKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKVPW 139 (151)
Q Consensus 87 ~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~ 139 (151)
...+...|+ -|...+..............||+.||..|...|
T Consensus 68 ---------i~~~~~~C~--iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 109 (133)
T 4ap4_A 68 ---------IGSGTVSCP--ICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 109 (133)
T ss_dssp ---------CSSSSCBCT--TTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHH
T ss_pred ---------cCCCCCCCC--CCCCccccccccCcceEeCCCCChhhHHHHHHH
Confidence 123345677 676555432111122233468888888888777
No 7
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.05 E-value=5.2e-10 Score=75.80 Aligned_cols=55 Identities=22% Similarity=0.492 Sum_probs=42.4
Q ss_pred CCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
.....+.|+||++.+. +++. .+|||+||..|+..++... ..+|| .|...+...++
T Consensus 14 ~~~~~~~C~IC~~~~~--~pv~-~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~~ 68 (170)
T 3hcs_A 14 PLESKYECPICLMALR--EAVQ-TPCGHRFCKACIIKSIRDA------GHKCP--VDNEILLENQL 68 (170)
T ss_dssp CCCGGGBCTTTCSBCS--SEEE-CTTSCEEEHHHHHHHHHHH------CSBCT--TTCCBCCGGGC
T ss_pred CCCCCCCCCCCChhhc--CcEE-CCCCCHHHHHHHHHHHHhC------CCCCC--CCccCcchhhh
Confidence 3456789999998774 4555 4899999999999998765 24899 58887776543
No 8
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.04 E-value=6.9e-11 Score=70.03 Aligned_cols=58 Identities=28% Similarity=0.563 Sum_probs=45.1
Q ss_pred CCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 8 DDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 8 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
+......+|+||++.+...+.+..+.|+|.||..|+..|++.. ..|| -|...+....+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~~~~~ 67 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-------DSCP--VCRKSLTGQNT 67 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-------CSCT--TTCCCCCCSCS
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-------CcCc--CcCCccCCccc
Confidence 3445678999999998766666566899999999999998532 4899 68887776554
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3e-10 Score=68.09 Aligned_cols=61 Identities=21% Similarity=0.483 Sum_probs=46.5
Q ss_pred CCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 8 DDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 8 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
+.....++|+||++.+. +++. ++|||.||..|+..++......+. .+.|| .|...+...++
T Consensus 14 ~~~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~-~~~CP--~Cr~~~~~~~~ 74 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLT--QPLS-LDCGHSFCQACLTANHKKSMLDKG-ESSCP--VCRISYQPENI 74 (85)
T ss_dssp CCCCCCCCCTTTCSCCS--SCBC-CSSSCCBCTTHHHHHHHHHHHTTS-CCCCT--TTCCSSCSSSC
T ss_pred HHccCCCCCCCCCcccC--Ccee-CCCCCHHHHHHHHHHHHHhhcCCC-CCcCC--CCCCccCHHhc
Confidence 34456789999998874 3444 489999999999999988665443 57999 68888776554
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=67.76 Aligned_cols=57 Identities=19% Similarity=0.519 Sum_probs=42.4
Q ss_pred CCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
.....+.|+||++.+. +++.+ .|||.||..|+..+++. ......|| .|...+..+++
T Consensus 16 ~~~~~~~C~IC~~~~~--~~~~~-~CgH~fC~~Ci~~~~~~----~~~~~~CP--~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQ--KPVTI-DCGHNFCLKCITQIGET----SCGFFKCP--LCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCS--SEEEC-TTCCEEEHHHHHHHCSS----SCSCCCCS--SSCCCCCCCCC
T ss_pred hCccCCEeccCCcccC--CeEEc-CCCChhhHHHHHHHHHc----CCCCCCCC--CCCCcCCcccC
Confidence 3456789999998774 45554 89999999999998752 22357999 68887776543
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.04 E-value=2.7e-11 Score=71.90 Aligned_cols=65 Identities=23% Similarity=0.471 Sum_probs=47.5
Q ss_pred cccCCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 5 AETDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 5 a~~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
+..+.....++|+||++.+.. ++. ++|||.||..|+..|+............|| .|...+...++
T Consensus 4 ~~~~~~~~~~~C~IC~~~~~~--p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP--~Cr~~~~~~~l 68 (79)
T 2egp_A 4 GSSGNVQEEVTCPICLELLTE--PLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCP--VCGISYSFEHL 68 (79)
T ss_dssp SSSCCCCCCCEETTTTEECSS--CCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCS--SSCCCCCSSGG
T ss_pred chHhhcccCCCCcCCCcccCC--eeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCC--CCCCcCCHhhC
Confidence 344555678899999998743 444 489999999999998765433333467999 69888876655
No 12
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.4e-10 Score=64.89 Aligned_cols=56 Identities=18% Similarity=0.482 Sum_probs=42.3
Q ss_pred CCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 8 DDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 8 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
+.....+.|+||++.+. +++. +.|||.||..|+..++. .....|| .|...+..+++
T Consensus 10 ~~~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~------~~~~~CP--~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLC--SPKQ-TECGHRFCESCMAALLS------SSSPKCT--ACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEES--SCCC-CSSSCCCCHHHHHHHHT------TSSCCCT--TTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhc--CeeE-CCCCCHHHHHHHHHHHH------hCcCCCC--CCCcCCChhhc
Confidence 44566799999998874 3444 48999999999999985 1246899 68888776543
No 13
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=4.8e-10 Score=64.75 Aligned_cols=57 Identities=19% Similarity=0.454 Sum_probs=43.0
Q ss_pred ccCCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 6 ETDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 6 ~~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
..++.....+|+||++.+...+.+..+.|+|.||..|+..|+... .+|| -|...+..
T Consensus 7 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~~ 63 (69)
T 2kiz_A 7 EGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-------KKCP--ICRVDIEA 63 (69)
T ss_dssp TCCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-------SBCT--TTCSBSCS
T ss_pred CcCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-------CCCc--CcCccccC
Confidence 334456678999999988665555556899999999999998762 3699 58766543
No 14
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=9.2e-10 Score=62.41 Aligned_cols=47 Identities=21% Similarity=0.562 Sum_probs=35.7
Q ss_pred CCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCC
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQ 62 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~ 62 (151)
.....++|+||++.+. +++.+ .|||.||..|+..+++.. .....||.
T Consensus 16 ~~~~~~~C~IC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~~----~~~~~CP~ 62 (63)
T 2ysj_A 16 KLQEEVICPICLDILQ--KPVTI-DCGHNFCLKCITQIGETS----CGFFKCPL 62 (63)
T ss_dssp CCCCCCBCTTTCSBCS--SCEEC-TTSSEECHHHHHHHHHHC----SSCCCCSC
T ss_pred hCccCCCCCcCCchhC--CeEEe-CCCCcchHHHHHHHHHcC----CCCCcCcC
Confidence 4456789999998874 45554 899999999999998751 12468883
No 15
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.99 E-value=4.8e-10 Score=68.40 Aligned_cols=55 Identities=24% Similarity=0.590 Sum_probs=41.5
Q ss_pred cccCCCCCeeecccccccCCCCCceecCC-CCCccchHHHHHHHHHHHhCCccccCCCCCCCCCcc
Q 043988 5 AETDDGTPSFVCEICVESRSLYDSFDVKG-CSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARL 69 (151)
Q Consensus 5 a~~~~~~~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~ 69 (151)
...+.....+.|+||++.+. +++.+ . |||.||..|+..++... + ...|| .|...+
T Consensus 5 ~~~~~~~~~~~C~IC~~~~~--~p~~~-~~CgH~fC~~Ci~~~~~~~---~--~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 5 SEDDPIPDELLCLICKDIMT--DAVVI-PCCGNSYCDECIRTALLES---D--EHTCP--TCHQND 60 (92)
T ss_dssp SSCCCCCTTTEETTTTEECS--SCEEC-TTTCCEECHHHHHHHHHHC---T--TCCCT--TTCCSS
T ss_pred cccccCCcCCCCCCCChhhc--CceEC-CCCCCHHHHHHHHHHHHhc---C--CCcCc--CCCCcC
Confidence 34445566789999998874 55555 6 99999999999998742 1 36999 588775
No 16
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=5.7e-10 Score=65.32 Aligned_cols=54 Identities=19% Similarity=0.532 Sum_probs=42.1
Q ss_pred CCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 8 DDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 8 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
.+.....+|+||++.+.....+..+.|+|.||..|+..|++.. ..|| -|...+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-------~~CP--~Cr~~~~ 63 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-------KVCP--LCNMPVL 63 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-------SBCT--TTCCBCS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-------CcCC--CcCcccc
Confidence 3445678999999998766666556899999999999998753 3899 5876554
No 17
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.98 E-value=6.3e-10 Score=69.02 Aligned_cols=68 Identities=28% Similarity=0.571 Sum_probs=49.3
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhhc-CCHHHHHHHHHH
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLI-LPDDVFARWGLA 89 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~~-l~~~~~~~~~~~ 89 (151)
..+.|+||++.+ .+++..+.|||.||..|+..|+... ...|| .|...+...++... +-.+..+.+.++
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 21 EVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ------RAQCP--HCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT------CSBCT--TTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC------cCCCC--CCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 457899999887 4556536899999999999998764 26899 69998888776433 223444444443
No 18
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=4.4e-10 Score=64.78 Aligned_cols=56 Identities=20% Similarity=0.544 Sum_probs=41.7
Q ss_pred ccCCCCCeeecccccccCCCC----CceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 6 ETDDGTPSFVCEICVESRSLY----DSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 6 ~~~~~~~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
..+......+|+||++.+... +.+.++.|||.||..|+..|+.. ...|| -|...+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~ 67 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKIN 67 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-------CSSCT--TTCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-------CCCCC--CCCCccC
Confidence 334456678999999987532 23355689999999999999875 25899 5887664
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.97 E-value=5.9e-10 Score=66.78 Aligned_cols=60 Identities=23% Similarity=0.511 Sum_probs=44.7
Q ss_pred CCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
+....++|+||++.+. +++. ++|||.||..|+..|+.....++ ..+.|| .|...+...++
T Consensus 15 ~~~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~~~~~-~~~~CP--~Cr~~~~~~~~ 74 (85)
T 2ecw_A 15 MIKEEVTCPICLELLK--EPVS-ADCNHSFCRACITLNYESNRNTD-GKGNCP--VCRVPYPFGNL 74 (85)
T ss_dssp CCCTTTSCTTTCSCCS--SCEE-CTTSCCBCHHHHHHHHHHSBCTT-SCBCCT--TTCCCCCTTCC
T ss_pred hCccCCCCcCCChhhC--ccee-CCCCCHHHHHHHHHHHHhccCCC-CCCCCC--CCCCcCCHHhC
Confidence 3456789999998874 3444 48999999999999987754222 257999 69888876654
No 20
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.95 E-value=1.5e-10 Score=67.17 Aligned_cols=58 Identities=19% Similarity=0.548 Sum_probs=44.0
Q ss_pred CCCeeecccccccCCCC----CceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhh
Q 043988 10 GTPSFVCEICVESRSLY----DSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRL 76 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~ 76 (151)
.+...+|+||++.+..+ +.+..+.|||.||..|+..|++.. ..|| .|...+...++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCP--TCRKKINHKRYHP 68 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-------SBCT--TTCCBCCCCSCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-------CCCC--CCCCccChhheee
Confidence 34568999999887532 333556899999999999998753 4899 6988887766543
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.94 E-value=7.4e-10 Score=64.93 Aligned_cols=54 Identities=22% Similarity=0.566 Sum_probs=40.1
Q ss_pred cCCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCcc
Q 043988 7 TDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARL 69 (151)
Q Consensus 7 ~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~ 69 (151)
.+.....+.|+||++.+. +++.+..|||.||..|+..++... + ...|| .|...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~---~--~~~CP--~Cr~~~ 62 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES---D--EHTCP--TCHQND 62 (74)
T ss_dssp CCCSCGGGSCSSSCCCCT--TCEECSSSCCEECTTHHHHHHHHS---S--SSCCS--SSCCSS
T ss_pred cccCCCCCCCcCCChHHh--CCeEcCCCCCHHHHHHHHHHHHhc---C--CCcCC--CCCCcC
Confidence 344466789999998874 555553399999999999998753 1 46899 587654
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1.7e-09 Score=64.38 Aligned_cols=52 Identities=21% Similarity=0.541 Sum_probs=40.6
Q ss_pred cCCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 7 TDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 7 ~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
.+.....+.|+||++.+ .+++. +.|||.||..|+..++.. ...|| .|...+.
T Consensus 9 ~~~~~~~~~C~IC~~~~--~~p~~-~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAF--QNPVV-TKCRHYFCESCALEHFRA-------TPRCY--ICDQPTG 60 (81)
T ss_dssp SSCCCCCSBCSSSCSBC--CSEEE-CTTSCEEEHHHHHHHHHH-------CSBCS--SSCCBCC
T ss_pred cccCCCCCCCcCCCchh--cCeeE-ccCCCHhHHHHHHHHHHC-------CCcCC--CcCcccc
Confidence 34456678999999887 34554 589999999999999864 35899 6888775
No 23
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.94 E-value=2.8e-09 Score=67.98 Aligned_cols=85 Identities=20% Similarity=0.425 Sum_probs=58.4
Q ss_pred CCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhhcCCHHHHHHHHH
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARWGL 88 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~~ 88 (151)
.....+.|+||++.+. +++.+ .|||.||..|+..++... ...|| .|...+...++. ....++ +
T Consensus 14 ~~~~~~~C~IC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~~~---~~~~l~---~ 76 (118)
T 3hct_A 14 PLESKYECPICLMALR--EAVQT-PCGHRFCKACIIKSIRDA------GHKCP--VDNEILLENQLF---PDNFAK---R 76 (118)
T ss_dssp CCCGGGBCTTTCSBCS--SEEEC-TTSCEEEHHHHHHHHHHH------CSBCT--TTCCBCCGGGCE---ECHHHH---H
T ss_pred CCCCCCCCCcCChhhc--CeEEC-CcCChhhHHHHHHHHhhC------CCCCC--CCCCCcCHHhcc---cCHHHH---H
Confidence 3456689999998774 45554 899999999999998765 23899 688888765442 111111 1
Q ss_pred HHHhhhhcCCCeeecCcccCCccccccc
Q 043988 89 ALCESALVGHKKFYCPYKDCSSMLIDEG 116 (151)
Q Consensus 89 ~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 116 (151)
. +. .-.++||+.+|+..+....
T Consensus 77 ~-----i~-~l~v~C~n~gC~~~~~~~~ 98 (118)
T 3hct_A 77 E-----IL-SLMVKCPNEGCLHKMELRH 98 (118)
T ss_dssp H-----HH-TSEEECSSTTCCCEEEGGG
T ss_pred H-----Hc-cceeECCCCCCCCEEeeHH
Confidence 1 11 2357899989998777653
No 24
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.93 E-value=1.2e-09 Score=60.10 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=38.8
Q ss_pred CCeeecccccccCCC-CCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCcc
Q 043988 11 TPSFVCEICVESRSL-YDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARL 69 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~-~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~ 69 (151)
....+|+||++++.. .+.+..+.|+|.||..|+..|++.. ..|| -|...+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP--~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-------YRCP--LCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-------CCCT--TSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-------CcCC--CCCCcC
Confidence 446789999998743 3345566899999999999998764 5899 577655
No 25
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3.9e-10 Score=65.58 Aligned_cols=56 Identities=16% Similarity=0.339 Sum_probs=43.1
Q ss_pred CCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhh
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRL 76 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~ 76 (151)
......+|+||++.+ .+.+.+ .|||.||..|+..|+.. ...|| -|...+....+..
T Consensus 11 ~~~~~~~C~IC~~~~--~~~~~~-~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 11 PSLTVPECAICLQTC--VHPVSL-PCKHVFCYLCVKGASWL-------GKRCA--LCRQEIPEDFLDS 66 (71)
T ss_dssp SSSSCCBCSSSSSBC--SSEEEE-TTTEEEEHHHHHHCTTC-------SSBCS--SSCCBCCHHHHSC
T ss_pred cCCCCCCCccCCccc--CCCEEc-cCCCHHHHHHHHHHHHC-------CCcCc--CcCchhCHhhccC
Confidence 345668999999877 444554 79999999999988743 25899 6999988877643
No 26
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=2e-09 Score=66.00 Aligned_cols=61 Identities=30% Similarity=0.516 Sum_probs=46.4
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCc-cChhHH
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEAR-LEFEDC 74 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~-~~~~~i 74 (151)
...+.||||++.+ .+++.+..|||+||+.|+..|+...-.. ....+||..+|... +...++
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~-~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKR-KKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTT-TCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCc-CCCCCCCcCcCcccccCHhhC
Confidence 4568999999877 5666653599999999999999875321 23579998889877 776654
No 27
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.92 E-value=1.5e-09 Score=68.99 Aligned_cols=82 Identities=26% Similarity=0.493 Sum_probs=57.1
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhhcCCHHHHHHHHHHHH
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARWGLALC 91 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~~~~~ 91 (151)
..+.|+||++.+ .+++. ++|||.||..|+..++... ...|| .|...+...++...+ .. +.+.+.
T Consensus 22 ~~~~C~IC~~~~--~~p~~-~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~~~~~~-~~----l~~~i~ 85 (116)
T 1rmd_A 22 KSISCQICEHIL--ADPVE-TSCKHLFCRICILRCLKVM------GSYCP--SCRYPCFPTDLESPV-KS----FLNILN 85 (116)
T ss_dssp HHTBCTTTCSBC--SSEEE-CTTSCEEEHHHHHHHHHHT------CSBCT--TTCCBCCGGGCBCCC-HH----HHHHHH
T ss_pred CCCCCCCCCcHh--cCcEE-cCCCCcccHHHHHHHHhHC------cCcCC--CCCCCCCHhhccccH-HH----HHHHHH
Confidence 356899999877 44555 4899999999999998763 35899 699888887764321 11 112111
Q ss_pred hhhhcCCCeeecCcccCCcccccc
Q 043988 92 ESALVGHKKFYCPYKDCSSMLIDE 115 (151)
Q Consensus 92 ~~~~~~~~~~~Cp~~~C~~~~~~~ 115 (151)
.-.++||+.+|+..+...
T Consensus 86 ------~l~v~C~~~gC~~~~~~~ 103 (116)
T 1rmd_A 86 ------SLMVKCPAQDCNEEVSLE 103 (116)
T ss_dssp ------HCEEECCSTTCCCEEEHH
T ss_pred ------HhcCCCCCCCCcchhhHh
Confidence 125689988998877654
No 28
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.92 E-value=6.1e-10 Score=65.97 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=41.5
Q ss_pred CCCCeeecccccccCCCCCceec-CCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 9 DGTPSFVCEICVESRSLYDSFDV-KGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~-~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
......+|+||++++...+...+ ..|||.||+.|+..++.. ....|| .|...+....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~------~~~~CP--~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD------ENGLCP--ACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS------SCSBCT--TTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc------CCCCCC--CCCCccCCCch
Confidence 34556899999998765443322 249999999999887532 246899 69888776554
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.92 E-value=9e-10 Score=65.12 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=47.3
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHh-hcCCHHHHHHHH
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCR-LILPDDVFARWG 87 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~-~~l~~~~~~~~~ 87 (151)
...+.|+||++.+ .+++.+ .|||.||+.|+..|+.. + ..+|| .|+..+...++. +..-.+.++.|.
T Consensus 6 ~~~~~C~IC~~~~--~~Pv~~-~CgH~fc~~Ci~~~~~~----~--~~~CP--~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDPVIV-STGQTYERSSIQKWLDA----G--HKTCP--KSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSSCTTTSCCC--SSEEEE-TTTEEEEHHHHHHHHTT----T--CCBCT--TTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cccCCCCCccccc--cCCEEc-CCCCeecHHHHHHHHHH----C--cCCCC--CCcCCCChhhCccCHHHHHHHHHHH
Confidence 4568999999877 455555 89999999999999853 1 46899 688888766542 333345555554
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.90 E-value=1.9e-10 Score=71.23 Aligned_cols=68 Identities=24% Similarity=0.513 Sum_probs=47.9
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHh-hcCCHHHHHHHHHHH
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCR-LILPDDVFARWGLAL 90 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~-~~l~~~~~~~~~~~~ 90 (151)
..+.|+||++.+. +++.+..|||.||..|+..|+.. ...|| .|...+...++. +..-.+.++.|.+..
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY-------KTQCP--TCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT-------CCBCT--TTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC-------CCCCC--CCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 4578999998874 45554589999999999999863 25899 699888876552 222234555555443
No 31
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.89 E-value=4.6e-10 Score=63.72 Aligned_cols=56 Identities=20% Similarity=0.563 Sum_probs=42.7
Q ss_pred CeeecccccccCCCC----CceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhh
Q 043988 12 PSFVCEICVESRSLY----DSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRL 76 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~ 76 (151)
+..+|+||++.+..+ +.+..+.|||.||.+|+..|++. ...|| .|...+...++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-------CSBCT--TTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-------CCCCC--CCCccCCccceee
Confidence 357899999987532 33345589999999999999875 25899 6998888776644
No 32
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=6.3e-09 Score=65.57 Aligned_cols=70 Identities=17% Similarity=0.412 Sum_probs=48.5
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhhc-CCHHHHHHHHHHH
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLI-LPDDVFARWGLAL 90 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~~-l~~~~~~~~~~~~ 90 (151)
..+.|+||++.+. +++. ++|||.||..|+..++... ...+.|| .|...+....+... .-.+..+.+.+.+
T Consensus 20 ~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~----~~~~~CP--~Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 20 KILECPICLELIK--EPVS-TKCDHIFCKFCMLKLLNQK----KGPSQCP--LCKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp HHTSCSSSCCCCS--SCCB-CTTSCCCCSHHHHHHHHSS----SSSCCCT--TTSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCCCcccChhhc--CeEE-CCCCCHHHHHHHHHHHHhC----CCCCCCc--CCCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 3568999998774 4444 4899999999999998643 2247899 69988887776432 2234555554443
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=6e-10 Score=63.63 Aligned_cols=58 Identities=24% Similarity=0.440 Sum_probs=42.0
Q ss_pred eeecccccc-cCCCCCc-eecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhhcC
Q 043988 13 SFVCEICVE-SRSLYDS-FDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLIL 78 (151)
Q Consensus 13 ~~~C~iC~~-~~~~~~~-~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~~l 78 (151)
.++|+||++ .+..+.. +.++.|||.||.+|+..++.. + ...|| .|+..+...+++..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~--~~~CP--~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G--AGNCP--ECGTPLRKSNFRVQL 62 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T--SSSCT--TTCCCCSSCCCEEEC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C--CCcCC--CCCCccccccceeec
Confidence 468999998 5543332 123589999999999998753 1 46899 699988887775443
No 34
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=3e-09 Score=62.39 Aligned_cols=52 Identities=19% Similarity=0.462 Sum_probs=41.1
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
....+|+||++++...+.+..+.|+|.||..|+..|++.. ..|| -|...+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-------~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-------RTCP--ICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-------SSCT--TTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-------CcCc--CcCCcCCC
Confidence 3557899999998776666666899999999999998652 4899 58776643
No 35
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.81 E-value=1.2e-10 Score=76.63 Aligned_cols=92 Identities=17% Similarity=0.369 Sum_probs=55.0
Q ss_pred CCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhhcCCHHHHHHHHHH
Q 043988 10 GTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARWGLA 89 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~~~ 89 (151)
....+.|+||++.+ .+++.+ .|||+||..|+..++.. + ...|| .|...+.......+++.+.+ |...
T Consensus 28 l~~~~~C~IC~~~~--~~pv~~-~CgH~FC~~Ci~~~~~~----~--~~~CP--~Cr~~~~~~~~~~~l~~~~~--~~d~ 94 (141)
T 3knv_A 28 LEAKYLCSACRNVL--RRPFQA-QCGHRYCSFCLASILSS----G--PQNCA--ACVHEGIYEEGISILESSSA--FPDN 94 (141)
T ss_dssp CCGGGBCTTTCSBC--SSEEEC-TTSCEEEHHHHHHHGGG----S--CEECH--HHHHTTCCCTTTTEECGGGC--EECH
T ss_pred CCcCcCCCCCChhh--cCcEEC-CCCCccCHHHHHHHHhc----C--CCCCC--CCCCcccccccccccchhhh--cccH
Confidence 35668999999877 445554 89999999999998752 1 35899 57765543332222221100 0000
Q ss_pred HHhhhhcCCCeeecCcccCCcccccc
Q 043988 90 LCESALVGHKKFYCPYKDCSSMLIDE 115 (151)
Q Consensus 90 ~~~~~~~~~~~~~Cp~~~C~~~~~~~ 115 (151)
..+..+. .-.++||+.+|+..+...
T Consensus 95 ~~~~~i~-~L~v~Cpn~GC~~~~~l~ 119 (141)
T 3knv_A 95 AARREVE-SLPAVCPSDGCTWKGTLK 119 (141)
T ss_dssp HHHHHHH-TSEEECCSTTCCCEEEHH
T ss_pred HHHHHHc-ccccccCCCCCCCEeEHH
Confidence 1111111 235799998998777654
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=4.5e-09 Score=58.38 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=34.9
Q ss_pred CCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCC
Q 043988 8 DDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQ 62 (151)
Q Consensus 8 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~ 62 (151)
+.......|+||++.+.. ++. ++|||.||..|+..|+... .....||.
T Consensus 10 ~~~~~~~~C~IC~~~~~~--p~~-~~CgH~fC~~Ci~~~~~~~----~~~~~CP~ 57 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKE--PVI-IECGHNFCKACITRWWEDL----ERDFPCPV 57 (58)
T ss_dssp SCSCCCCBCSSSCCBCSS--CCC-CSSCCCCCHHHHHHHTTSS----CCSCCCSC
T ss_pred hccccCCCCccCCcccCc--cEe-CCCCCccCHHHHHHHHHhc----CCCCCCCC
Confidence 344667899999988854 344 4899999999999986531 12467883
No 37
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.75 E-value=2.4e-09 Score=58.92 Aligned_cols=50 Identities=18% Similarity=0.450 Sum_probs=37.4
Q ss_pred CeeecccccccCCCCCceecCC-CCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 12 PSFVCEICVESRSLYDSFDVKG-CSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
...+|+||++++...+.+..+. |+|.||.+|+..|++. ...|| -|...+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-------~~~CP--~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-------HSTCP--LCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-------CCSCS--SSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-------CCcCc--CCCCEeE
Confidence 4568999999987655444444 9999999999998743 24799 5776653
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.74 E-value=1.2e-09 Score=68.58 Aligned_cols=56 Identities=27% Similarity=0.666 Sum_probs=42.0
Q ss_pred cccCCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 5 AETDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 5 a~~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
...+.....+.|+||++.+ .+++.+..|||.||..|+..++.. ...|| .|...+..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~ 62 (108)
T 2ckl_A 7 IKITELNPHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLET-------SKYCP--ICDVQVHK 62 (108)
T ss_dssp EEHHHHGGGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTS-------CSBCT--TTCCBSCS
T ss_pred cchhccCCcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHh-------CCcCc--CCCccccc
Confidence 3334445678999999887 456665589999999999999764 26899 68876654
No 39
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.73 E-value=6.9e-09 Score=63.18 Aligned_cols=52 Identities=19% Similarity=0.468 Sum_probs=40.1
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
....+|+||++++...+.+..+.|+|.||..|+..|++. ...|| -|...+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-------~~~CP--~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-------SGTCP--VCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-------TCBCT--TTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-------CCcCc--CcCccCCC
Confidence 456789999998876665555689999999999999853 24899 58876653
No 40
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.72 E-value=3e-08 Score=59.57 Aligned_cols=53 Identities=13% Similarity=-0.012 Sum_probs=41.9
Q ss_pred CCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 10 GTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
....+.|+||++.+ .+++.+ .|||+||+.|+..|+.. ..+|| .|+..+...++
T Consensus 11 ~p~~~~CpI~~~~m--~dPV~~-~cGhtf~r~~I~~~l~~-------~~~cP--~~~~~l~~~~l 63 (85)
T 2kr4_A 11 APDEFRDPLMDTLM--TDPVRL-PSGTVMDRSIILRHLLN-------SPTDP--FNRQMLTESML 63 (85)
T ss_dssp CCTTTBCTTTCSBC--SSEEEC-TTSCEEEHHHHHHHHHH-------CSBCT--TTCCBCCGGGC
T ss_pred CchheECcccCchh--cCCeEC-CCCCEECHHHHHHHHhc-------CCCCC--CCcCCCChHhc
Confidence 34578999999877 566665 79999999999999974 25899 58888876654
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.71 E-value=1.1e-09 Score=69.60 Aligned_cols=52 Identities=23% Similarity=0.624 Sum_probs=39.6
Q ss_pred CCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
.....+.|+||++.+. +++.+ .|||.||..|+..++.. ....|| .|...+..
T Consensus 11 ~~~~~~~C~iC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILV--EPVTL-PCNHTLCKPCFQSTVEK------ASLCCP--FCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCS--SCEEC-TTSCEECHHHHCCCCCT------TTSBCT--TTCCBCHH
T ss_pred CCCCCCCCccCCcccC--ceeEc-CCCCHHhHHHHHHHHhH------CcCCCC--CCCcccCc
Confidence 3445689999998774 45555 89999999999988742 137899 69887765
No 42
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.2e-08 Score=72.94 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=52.1
Q ss_pred CCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhh-cCCHHHHHHHHH
Q 043988 10 GTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRL-ILPDDVFARWGL 88 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~-~l~~~~~~~~~~ 88 (151)
....+.||||++.+ .+++....|||.||+.|+..|+.. + ....||..+|...+...++.. ..-....+.++.
T Consensus 178 ~~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~----~-~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 178 GKIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQG----Y-TTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp SBCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTT----C-SCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred CceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHh----C-CCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 45668999999877 567765589999999999999863 1 246899888999888776532 111234445544
Q ss_pred HH
Q 043988 89 AL 90 (151)
Q Consensus 89 ~~ 90 (151)
+.
T Consensus 251 r~ 252 (267)
T 3htk_C 251 KE 252 (267)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.64 E-value=1.6e-08 Score=64.93 Aligned_cols=48 Identities=29% Similarity=0.621 Sum_probs=37.9
Q ss_pred eeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 13 SFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 13 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
.+.|+||++.+. +++.+ +|||.||..|+..++.. ....|| .|...+..
T Consensus 52 ~~~C~IC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF--RPITT-VCQHNVCKDCLDRSFRA------QVFSCP--ACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS--SEEEC-TTSCEEEHHHHHHHHHT------TCCBCT--TTCCBCCT
T ss_pred CCCCCcCChHHc--CcEEe-eCCCcccHHHHHHHHhH------CcCCCC--CCCccCCC
Confidence 468999998874 45554 89999999999999872 246899 68887765
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.63 E-value=2.7e-08 Score=57.05 Aligned_cols=48 Identities=33% Similarity=0.668 Sum_probs=36.7
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
...+|+||++.+. +....++|||.||..|+..|++.. ..|| -|...+.
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQN-------PTCP--LCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHS-------CSTT--TTCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCc-------CcCc--CCChhhH
Confidence 3568999998874 333456899999999999998642 4899 5887665
No 45
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=6.2e-09 Score=66.29 Aligned_cols=65 Identities=20% Similarity=0.454 Sum_probs=44.1
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHh-hcCCHHHHHHHHHH
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCR-LILPDDVFARWGLA 89 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~-~~l~~~~~~~~~~~ 89 (151)
..+.|+||++.+. +++.+..|||.||..|+..++. ..|| .|...+...++. +..-.++++.+...
T Consensus 21 ~~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~---------~~CP--~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 21 KLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG---------TGCP--VCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT---------TBCS--SSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc---------CCCc--CCCCcCccccccccHHHHHHHHHHHHH
Confidence 4578999998874 4454438999999999998864 5899 688877655442 22223444555443
No 46
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.59 E-value=9.7e-08 Score=60.31 Aligned_cols=56 Identities=21% Similarity=0.423 Sum_probs=39.5
Q ss_pred CeeecccccccCCCCC---------------ceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 12 PSFVCEICVESRSLYD---------------SFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
...+|+||++++.... ...++.|+|.||..|+..|+.... ......|| -|...+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~--~~~~~~CP--~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN--KDGSLQCP--SCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC--CSSCCBCT--TTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc--CCCCCcCC--CCCCccCC
Confidence 3469999999985432 233568999999999999985432 12357999 58866643
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=9.5e-09 Score=56.86 Aligned_cols=47 Identities=21% Similarity=0.518 Sum_probs=35.2
Q ss_pred CCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 10 GTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
....+.|+||++.+.. ++. ++|||.||..|+.. ..+.|| .|...+..
T Consensus 3 e~~~~~C~IC~~~~~~--p~~-l~CgH~fC~~Ci~~----------~~~~CP--~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC--PKL-LPCLHTLCSGCLEA----------SGMQCP--ICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBC--CSC-STTSCCSBTTTCSS----------SSSSCS--SCCSSSSC
T ss_pred cccCCCceEeCCccCC--eEE-cCCCCcccHHHHcc----------CCCCCC--cCCcEeec
Confidence 4556789999988753 333 58999999999766 257899 58766653
No 48
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=3.2e-09 Score=61.42 Aligned_cols=51 Identities=25% Similarity=0.544 Sum_probs=37.8
Q ss_pred CCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChh
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFE 72 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~ 72 (151)
......+|+||++.+.. +. ++|+|.||..|+..|+.. ...|| -|...+...
T Consensus 11 ~~~~~~~C~IC~~~~~~---~~-~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~ 61 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD---LI-LPCAHSFCQKCIDKWSDR-------HRNCP--ICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCSSSCCSCCS---EE-ETTTEEECHHHHHHSSCC-------CSSCH--HHHHCTTCC
T ss_pred cCCCCCCCeeCCcCccC---cc-cCCCCcccHHHHHHHHHC-------cCcCC--CcCCcccCC
Confidence 44567899999988754 34 489999999999998651 46888 577665543
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.56 E-value=5.6e-08 Score=59.92 Aligned_cols=51 Identities=20% Similarity=0.114 Sum_probs=40.0
Q ss_pred CeeecccccccCCCCCceecCCCC-CccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCS-HFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~-H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
..+.||||++.+ .+++.+ .|| |+||+.|+..|+.. ..+|| .|+..+...++
T Consensus 21 ~~~~CpI~~~~m--~dPV~~-~cG~htf~r~cI~~~l~~-------~~~cP--~~~~~l~~~~L 72 (98)
T 1wgm_A 21 DEFLDPIMSTLM--CDPVVL-PSSRVTVDRSTIARHLLS-------DQTDP--FNRSPLTMDQI 72 (98)
T ss_dssp TTTBCTTTCSBC--SSEEEC-TTTCCEEEHHHHHHHTTT-------SCBCT--TTCSBCCTTTS
T ss_pred HhcCCcCccccc--cCCeEC-CCCCeEECHHHHHHHHHh-------CCCCC--CCCCCCChhhc
Confidence 468999999877 566665 899 99999999999864 24899 58888876543
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.56 E-value=2.7e-08 Score=66.06 Aligned_cols=50 Identities=32% Similarity=0.725 Sum_probs=39.4
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChh
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFE 72 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~ 72 (151)
..+.|+||++.+ .+++. +.|||.||..|+..++.. ..+.|| .|...+...
T Consensus 77 ~~~~C~IC~~~~--~~pv~-~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELV--YQPVT-TECFHNVCKDCLQRSFKA------QVFSCP--ACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBC--SSEEE-CTTSCEEEHHHHHHHHHT------TCCBCT--TTCCBCCTT
T ss_pred cCCEeecCChhh--cCCEE-cCCCCchhHHHHHHHHHh------CCCcCC--CCCccCCCC
Confidence 346899999877 44555 489999999999999874 246899 688887765
No 51
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.52 E-value=3.4e-08 Score=66.51 Aligned_cols=49 Identities=31% Similarity=0.794 Sum_probs=38.3
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
..+.|+||++.+. +++.+..|||.||..|+..|+... ...|| .|...+.
T Consensus 53 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSG------NKECP--TCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTT------CCBCT--TTCCBCC
T ss_pred CCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhC------cCCCC--CCCCcCC
Confidence 3468999998874 455555899999999999998731 46899 6887774
No 52
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.50 E-value=3.5e-08 Score=64.60 Aligned_cols=47 Identities=28% Similarity=0.733 Sum_probs=35.9
Q ss_pred eeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 13 SFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 13 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
.++|+||++.+ .+++.+ +|||.||..|+..|+.. ...|| .|...+..
T Consensus 53 ~~~C~iC~~~~--~~~~~~-~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYF--IEAVTL-NCAHSFCSYCINEWMKR-------KIECP--ICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBC--SSEEEE-TTSCEEEHHHHHHHTTT-------CSBCT--TTCCBCCC
T ss_pred cCCCcccCccc--CCceEC-CCCCCccHHHHHHHHHc-------CCcCC--CCCCcCCC
Confidence 45799999887 455554 89999999999998753 35799 58776643
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.49 E-value=7.3e-08 Score=59.62 Aligned_cols=51 Identities=14% Similarity=-0.001 Sum_probs=40.2
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
..+.||||++.+ .+++.+ .|||+||+.|+..|+.. ..+|| -|+..+...++
T Consensus 28 ~~~~CpI~~~~m--~dPV~~-~cGhtf~r~~I~~~l~~-------~~~cP--~~~~~l~~~~L 78 (100)
T 2kre_A 28 DEFRDPLMDTLM--TDPVRL-PSGTIMDRSIILRHLLN-------SPTDP--FNRQTLTESML 78 (100)
T ss_dssp TTTBCTTTCSBC--SSEEEE-TTTEEEEHHHHHHHTTS-------CSBCS--SSCCBCCTTSS
T ss_pred HhhCCcCccCcc--cCCeEC-CCCCEEchHHHHHHHHc-------CCCCC--CCCCCCChhhc
Confidence 468999999877 566666 69999999999999863 25899 58887776543
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=2e-07 Score=55.34 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=38.9
Q ss_pred CCeeecccccccCCC-----------CC-ceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhH
Q 043988 11 TPSFVCEICVESRSL-----------YD-SFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFED 73 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~-----------~~-~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~ 73 (151)
....+|+||++++.. .+ .+.+..|+|.|+.+|+..|++.. -+|| -|...+....
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-------~~CP--~CR~~~~~~~ 78 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-------NRCP--LCQQDWVVQR 78 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-------CBCT--TTCCBCCEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-------CCCC--CcCCCcchhh
Confidence 345679999888743 12 44555699999999999998653 3899 5887776543
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.29 E-value=5.8e-07 Score=64.97 Aligned_cols=53 Identities=11% Similarity=-0.065 Sum_probs=41.0
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
...+.|+||++.+ .+++.+ +|||+||+.|+..|+... + .+|| .|+..++..++
T Consensus 206 ~~~~~c~i~~~~~--~dPv~~-~~gh~f~~~~i~~~~~~~---~---~~cP--~~~~~~~~~~l 258 (281)
T 2c2l_A 206 PDYLCGKISFELM--REPCIT-PSGITYDRKDIEEHLQRV---G---HFNP--VTRSPLTQEQL 258 (281)
T ss_dssp CSTTBCTTTCSBC--SSEEEC-SSCCEEETTHHHHHHHHT---C---SSCT--TTCCCCCGGGC
T ss_pred CcccCCcCcCCHh--cCCeEC-CCCCEECHHHHHHHHHHC---C---CCCc--CCCCCCchhcC
Confidence 3568999999877 566665 799999999999998752 2 2499 68888876553
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.22 E-value=4.2e-07 Score=58.55 Aligned_cols=57 Identities=19% Similarity=0.548 Sum_probs=43.2
Q ss_pred CCeeecccccccCCC----CCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhh
Q 043988 11 TPSFVCEICVESRSL----YDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRL 76 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~----~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~ 76 (151)
+....|+||++.+.. ......+.|||.||..|+..|++.. .+|| .|...+..+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCP--TCRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-------SBCT--TTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-------CCCC--CCCCcCChhccee
Confidence 456789999987643 1222445899999999999998752 4899 6999898877644
No 57
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=3.3e-06 Score=49.96 Aligned_cols=54 Identities=22% Similarity=0.509 Sum_probs=40.9
Q ss_pred CCeeecccccccCCCCCceecCCCC-----CccchHHHHHHHHHHHhCCccccCCCCCCCCCccChh
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCS-----HFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFE 72 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~-----H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~ 72 (151)
.....|.||++++...+.+. ++|. |.|..+||..|+... + ...|| -|...+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~-~pC~C~Gs~h~fH~~Cl~~Wl~~~---~--~~~Cp--lCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLI-TPCHCTGSLHFVHQACLQQWIKSS---D--TRCCE--LCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEE-CSSSCCSSSCCEETTHHHHHHHHH---C--CSBCS--SSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeE-eccccCCcCCeeCHHHHHHHHhhC---C--CCCCC--CCCCeeecC
Confidence 44568999999887555554 5786 999999999999875 1 36899 588766543
No 58
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.6e-06 Score=48.77 Aligned_cols=47 Identities=21% Similarity=0.465 Sum_probs=33.9
Q ss_pred CCCCeeecccccccCCCCCceecCCCCCc-cchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGCSHF-NCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
.......|.||++.. .++ .+++|||. ||..|+.. ...|| -|...+..
T Consensus 11 ~~~~~~~C~IC~~~~--~~~-v~~pCgH~~~C~~C~~~-----------~~~CP--~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGT--VNW-VLLPCRHTCLCDGCVKY-----------FQQCP--MCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSC--CCC-EETTTTBCCSCTTHHHH-----------CSSCT--TTCCCCCC
T ss_pred cCCCCCCCCCcCcCC--CCE-EEECCCChhhhHHHHhc-----------CCCCC--CCCcchhc
Confidence 345578999999765 343 44599999 99999873 25899 58766543
No 59
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.12 E-value=1.7e-06 Score=48.30 Aligned_cols=49 Identities=27% Similarity=0.857 Sum_probs=39.8
Q ss_pred CeeecCcccCCccccccccccCcccCcc--cchhhhhcCCCCC--CC--CCCchhhhh
Q 043988 99 KKFYCPYKDCSSMLIDEGEAIRKSNCPH--CRRLFCVQCKVPW--HS--EFDCSQFQK 150 (151)
Q Consensus 99 ~~~~Cp~~~C~~~~~~~~~~~~~~~C~~--C~~~~C~~C~~~~--H~--~~~C~~~~~ 150 (151)
+.+.|| .|+..++..+ ..++|+|.. |++.||+.|+.+| |. ..+|..|+.
T Consensus 5 ~~k~CP--~C~~~Iek~~-GCnhmtC~~~~C~~~FCw~C~~~~~~~~~~~y~C~~y~~ 59 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKDG-GCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE 59 (60)
T ss_dssp CCCCCT--TTCCCCSSCC-SCCSSSCCSSGGGSCCSSSSCSCSGGGGTSSSSSCSCCC
T ss_pred cceECc--CCCCeeEeCC-CCCcEEECCCCcCCEEeeCcCCCcccCCCccccCCCccc
Confidence 345788 9999999975 589999987 9999999999998 43 347877664
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.08 E-value=3.4e-06 Score=57.34 Aligned_cols=53 Identities=9% Similarity=-0.079 Sum_probs=41.2
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHH
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDC 74 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i 74 (151)
...+.||||++.+ .+++.+ +|||+||+.|+..|+... + .+|| .|+..++..++
T Consensus 104 p~~f~CPI~~elm--~DPV~~-~~Ghtfer~~I~~~l~~~---~---~tcP--~t~~~l~~~~L 156 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCIT-PSGITYDRKDIEEHLQRV---G---HFDP--VTRSPLTQDQL 156 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEEC-TTSCEEEHHHHHHHHHHT---C---SBCT--TTCCBCCGGGC
T ss_pred cHhhcccCccccC--CCCeEC-CCCCEECHHHHHHHHHhC---C---CCCC--CCcCCCChhhC
Confidence 4568999999877 566665 899999999999999762 2 2699 58888876544
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.04 E-value=2e-06 Score=50.06 Aligned_cols=42 Identities=24% Similarity=0.652 Sum_probs=32.3
Q ss_pred eeecccccccCCCCCceecCCCCCc-cchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 13 SFVCEICVESRSLYDSFDVKGCSHF-NCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 13 ~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
...|+||++.. .+++. ++|||. ||..|+..+ ..|| -|...+.
T Consensus 24 ~~~C~iC~~~~--~~~~~-~pCgH~~~C~~C~~~~-----------~~CP--~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRN--IAIVF-VPCGHLVTCKQCAEAV-----------DKCP--MCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSB--CCEEE-ETTCCBCCCHHHHTTC-----------SBCT--TTCCBCS
T ss_pred CCCCCCCCCCC--CCEEE-cCCCChhHHHHhhhcC-----------ccCC--CcCcCcc
Confidence 46899999866 44544 489999 999997765 5899 5887665
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=5e-06 Score=48.45 Aligned_cols=43 Identities=26% Similarity=0.682 Sum_probs=31.5
Q ss_pred eeecccccccCCCCCceecCCCCCc-cchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 13 SFVCEICVESRSLYDSFDVKGCSHF-NCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 13 ~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
..+|+||++.. .+++. ++|||. ||..|+.. ...|| -|...+..
T Consensus 25 ~~~C~IC~~~~--~~~~~-~pCgH~~~C~~C~~~-----------~~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVF-VPCGHLVTCKQCAEA-----------VDKCP--MCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC--CCBCC-SSSCCCCBCHHHHHH-----------CSBCT--TTCCBCCC
T ss_pred CCCCCcCCCCC--CCEEE-ecCCCHHHHHHHhhC-----------CCCCc--cCCceecC
Confidence 45899999876 34443 589999 99999842 25899 58876643
No 63
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.90 E-value=1e-05 Score=61.10 Aligned_cols=50 Identities=30% Similarity=0.682 Sum_probs=37.8
Q ss_pred eeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhH
Q 043988 13 SFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFED 73 (151)
Q Consensus 13 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~ 73 (151)
..+|+||++.. .+++. .+|||.||..|+..++.. ....|| -|...+....
T Consensus 332 ~~~C~ICle~~--~~pv~-lpCGH~FC~~Ci~~wl~~------~~~~CP--~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAEND--KDVKI-EPCGHLMCTSCLTSWQES------EGQGCP--FCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSB--CCEEE-ETTCCEECHHHHHHHHHH------TCSBCT--TTCCBCCEEE
T ss_pred CCCCCccCcCC--CCeEE-eCCCChhhHHHHHHHHhc------CCCCCC--CCCCccCCce
Confidence 36999999877 34444 489999999999998864 135899 6887766543
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.87 E-value=4.6e-06 Score=51.99 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=36.6
Q ss_pred eecccccccCCCCC---------------ceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 14 FVCEICVESRSLYD---------------SFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 14 ~~C~iC~~~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
.+|.||++.+...- .+..+.|+|.|+..|+..|+.. ..+|| -|...+..
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-------~~~CP--~Cr~~~~~ 101 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCP--LDNREWEF 101 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-------CSBCS--SSCSBCCE
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-------CCcCc--CCCCccee
Confidence 47999998876431 2344589999999999999764 25899 58876653
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.85 E-value=3.6e-06 Score=47.43 Aligned_cols=50 Identities=20% Similarity=0.437 Sum_probs=34.3
Q ss_pred CCeeecccccccCCCCCceecCCCCCc-cchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHF-NCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
+....|+||++...... +.+.+|||. ||.+|...+.+. .-+|| -|...+.
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~-------~~~CP--iCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKA-------GASCP--ICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETTEEEEEECHHHHHHHHHT-------TCBCT--TTCCBCC
T ss_pred CcCCCCcccCCcCCCeE-EEecCCCCHhHHHHHHHHHHHh-------CCcCC--CcCchhh
Confidence 34568999998653211 223489999 999999886542 14899 5877664
No 66
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.75 E-value=7.3e-06 Score=46.28 Aligned_cols=48 Identities=21% Similarity=0.480 Sum_probs=33.8
Q ss_pred CeeecccccccCCCCCcee-cCCCCCc-cchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 12 PSFVCEICVESRSLYDSFD-VKGCSHF-NCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~-~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
...+|.||++... +... .++|||. ||.+|+..+.+. .-.|| -|...+.
T Consensus 7 ~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~CP--iCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKKR-------NKPCP--VCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHHT-------TCCCT--TTCCCCC
T ss_pred CcCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHHc-------CCcCC--CcCcchh
Confidence 3458999998653 3332 2389999 899999987642 24799 5877664
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.64 E-value=1.6e-05 Score=46.81 Aligned_cols=43 Identities=35% Similarity=0.808 Sum_probs=32.1
Q ss_pred eeecccccccCCCCCceecCCCCCc-cchHHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 13 SFVCEICVESRSLYDSFDVKGCSHF-NCTSCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 13 ~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
...|+||++.. .+++. ++|||. ||..|+..+ ..|| -|...+..
T Consensus 18 ~~~C~IC~~~~--~~~v~-~pCgH~~~C~~C~~~~-----------~~CP--~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--INSTF-CPCGHTVCCESCAAQL-----------QSCP--VCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CCEEE-ETTCBCCBCHHHHTTC-----------SBCT--TTCCBCCE
T ss_pred CCEeEEeCccc--CcEEE-ECCCCHHHHHHHHHhc-----------CcCC--CCCchhhC
Confidence 45899999765 44444 489999 999998753 2899 58876654
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.59 E-value=1.2e-05 Score=50.95 Aligned_cols=50 Identities=24% Similarity=0.417 Sum_probs=0.0
Q ss_pred eecccccccCCCCC---------------ceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChh
Q 043988 14 FVCEICVESRSLYD---------------SFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFE 72 (151)
Q Consensus 14 ~~C~iC~~~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~ 72 (151)
-+|.||++++.... .+..+.|+|.|+..|+..|++.. -.|| -|...+...
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-------~~CP--~Cr~~~~~~ 113 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-------QVCP--LDNREWEFQ 113 (117)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-------CcCC--CCCCeeeee
Confidence 48999999885321 22234799999999999998773 4799 587765443
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.16 E-value=0.00059 Score=37.95 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=38.6
Q ss_pred eeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHh
Q 043988 13 SFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCR 75 (151)
Q Consensus 13 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~ 75 (151)
.+.|+|+++.+. +++....+||.|++.++.+|++.. + +||. .+..+...++.
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~---~----~cP~--t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDT---G----NDPI--TNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHH---S----BCTT--TCCBCCGGGCE
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhC---C----CCcC--CcCCCChhhcE
Confidence 478999998774 555543799999999999999864 2 4884 56677766653
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.09 E-value=0.00013 Score=54.51 Aligned_cols=42 Identities=21% Similarity=0.706 Sum_probs=32.3
Q ss_pred eeecccccccCCCCCceecCCCCCc-cchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 13 SFVCEICVESRSLYDSFDVKGCSHF-NCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 13 ~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
...|+||++.. .+++.+ +|||. ||..|+..+ ..|| -|...+.
T Consensus 295 ~~~C~IC~~~~--~~~v~l-pCgH~~fC~~C~~~~-----------~~CP--~CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKE--VSVVFI-PCGHLVVCQECAPSL-----------RKCP--ICRGIIK 337 (345)
T ss_dssp TCBCTTTSSSB--CCEEEE-TTCCEEECTTTGGGC-----------SBCT--TTCCBCC
T ss_pred CCCCCccCCcC--CceEEc-CCCChhHhHHHHhcC-----------CcCC--CCCCCcc
Confidence 46899999876 445544 89999 999998754 5899 5887664
No 71
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.06 E-value=0.00034 Score=40.50 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=37.6
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
+...+|.||++.+... .....|+|.|-..|+..|++.+- .-+|| .|...+.
T Consensus 13 ~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~-----~~~CP--~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNA-----EPRCP--HCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCS-----SCCCT--TTCSCCC
T ss_pred CCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcC-----CCCCC--CCcCcCC
Confidence 4457899999887542 23448999999999999986531 25899 5776654
No 72
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=97.04 E-value=0.0022 Score=37.20 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=42.6
Q ss_pred cccCCCCCeeecccccccCCCCCceecCC-CCCccchHHHHHHHHHHHhCCccccCCCCC-CCC
Q 043988 5 AETDDGTPSFVCEICVESRSLYDSFDVKG-CSHFNCTSCIVRYIASKLEGNITNISCPQL-GCE 66 (151)
Q Consensus 5 a~~~~~~~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~-~C~ 66 (151)
+........+.|.+|-+.+...-+++... =.|+||..|-+.+|+.+... ..+.||.. +|.
T Consensus 7 ~~~~~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~--~EvyCPSG~kCp 68 (93)
T 2cs3_A 7 GSPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGAT--GEVYCPSGEKCP 68 (93)
T ss_dssp SCSSCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSS--SCCCCTTSSCCB
T ss_pred CCCCCCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCC--CcEECCCCCccc
Confidence 33444567889999998886655554321 26999999999999998643 46888852 454
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.96 E-value=0.001 Score=49.51 Aligned_cols=63 Identities=21% Similarity=0.429 Sum_probs=44.4
Q ss_pred CCCCeeecccccccCCC-CCce----ecCCCCCccchHHHHHHHHHHHhC----CccccCCCCCCCCCccChhH
Q 043988 9 DGTPSFVCEICVESRSL-YDSF----DVKGCSHFNCTSCIVRYIASKLEG----NITNISCPQLGCEARLEFED 73 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~-~~~~----~~~~C~H~fC~~Cl~~~~~~~i~~----~~~~i~CP~~~C~~~~~~~~ 73 (151)
+++...+|+|||+.+.. ..++ ....|+|.|-..|+.+|+++.-.. ++..=.|| -|+..++...
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~sf 375 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLSTSF 375 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEGGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCccH
Confidence 34567899999988765 2222 124799999999999999987543 12234799 6988877443
No 74
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.70 E-value=0.0012 Score=40.06 Aligned_cols=46 Identities=22% Similarity=0.542 Sum_probs=30.3
Q ss_pred ecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 15 VCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 15 ~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
-|++|-- +......+.+|.|.||.+|...+.+.. .-.|| .|...+.
T Consensus 3 fC~~C~~--Pi~iygRmIPCkHvFCydCa~~~~~~~------~k~Cp--~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGL--PIKVYGRMIPCKHVFCYDCAILHEKKG------DKMCP--GCSDPVQ 48 (101)
T ss_dssp BCTTTCS--BCSEEEEEETTCCEEEHHHHHHHHHTT------CCBCT--TTCCBCS
T ss_pred ecCccCC--CeEEEeeeccccccHHHHHHHHHHhcc------CCCCc--CcCCeee
Confidence 4778853 434444566899999999998876543 12566 4665443
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.20 E-value=0.003 Score=38.50 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=23.5
Q ss_pred ccCcccCcccchhhhhcCCC-CCCCCCCc
Q 043988 118 AIRKSNCPHCRRLFCVQCKV-PWHSEFDC 145 (151)
Q Consensus 118 ~~~~~~C~~C~~~~C~~C~~-~~H~~~~C 145 (151)
....+.|..|+..+|..|.. ..|.+++-
T Consensus 68 e~l~~fC~~~~~~iC~~C~~~~~H~~H~~ 96 (101)
T 2jun_A 68 EKVNMYCVTDDQLICALCKLVGRHRDHQV 96 (101)
T ss_dssp SCCCEEETTTTEEECHHHHHHTTTSSSCB
T ss_pred CcceEECCCCCCccchhcCCCCCcCCCCe
Confidence 45788999999999999986 67988764
No 76
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.87 E-value=0.018 Score=31.72 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=34.9
Q ss_pred CCeeecccccccCCCCCceecCCCC--C---ccchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCS--H---FNCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~--H---~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
+....|-||+++... . .. .+|. + .|-.+||..|+..+- ...|| -|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~-~-l~-~PC~C~gs~~~~H~~Cl~~W~~~~~-----~~~C~--~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN-E-RF-RACGCTGELENVHRSCLSTWLTISR-----NTACQ--ICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC-C-CC-CSCCCSSGGGSCCHHHHHHHHHHHT-----CSBCT--TTCCBCC
T ss_pred CCCCEeEEeecCCCC-c-ee-cCcCCCCchhhhHHHHHHHHHHhCC-----CCccC--CCCCeee
Confidence 445689999987432 2 22 4654 4 899999999997652 36899 5876654
No 77
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=91.11 E-value=0.19 Score=33.24 Aligned_cols=86 Identities=16% Similarity=0.335 Sum_probs=49.3
Q ss_pred ecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhhcCCHHHHHHHHHHHHhhh
Q 043988 15 VCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARWGLALCESA 94 (151)
Q Consensus 15 ~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 94 (151)
.||+|...+...+.+.. ..+...+.+ +.+.||+.+|+..+...+++..+..
T Consensus 55 ~CP~Cr~~~~~~~~~~~-------------~~~~~~i~~--l~v~C~n~GC~~~~~~~~l~~H~~~-------------- 105 (170)
T 3hcs_A 55 KCPVDNEILLENQLFPD-------------NFAKREILS--LMVKCPNEGCLHKMELRHLEDHQAH-------------- 105 (170)
T ss_dssp BCTTTCCBCCGGGCEEC-------------HHHHHHHHT--SEEECCSTTCCCEEEGGGHHHHHTT--------------
T ss_pred CCCCCccCcchhhhhhh-------------HHHHHHHhh--cccCCCCCCCCceecHhHHHHHHhc--------------
Confidence 78888766644332221 223333432 4789998899998887775422110
Q ss_pred hcCCCeeecCcccCCccccccc--------cccCcccCcccchhhh
Q 043988 95 LVGHKKFYCPYKDCSSMLIDEG--------EAIRKSNCPHCRRLFC 132 (151)
Q Consensus 95 ~~~~~~~~Cp~~~C~~~~~~~~--------~~~~~~~C~~C~~~~C 132 (151)
=....+.|| +|+..+.... -..+.+.|+.|+..+-
T Consensus 106 -C~~~~v~C~--~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~ 148 (170)
T 3hcs_A 106 -CEFALMDCP--QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMA 148 (170)
T ss_dssp -CTTSEEECT--TTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEE
T ss_pred -CCceeeECC--CCChHHHHHHHHHHhhhhCCCCCeECCCCCCccC
Confidence 012346788 8998776552 1344556666665543
No 78
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=90.98 E-value=0.13 Score=36.25 Aligned_cols=52 Identities=21% Similarity=0.488 Sum_probs=38.2
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChh
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFE 72 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~ 72 (151)
...+|.+|.+-... -.....|+|+|-..|+..|++.. ....|| .|+..++.+
T Consensus 179 ~i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~~-----~~~~CP--~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSN-----AEPRCP--HCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTTC-----SSCBCT--TTCCBCCSC
T ss_pred CCCcCcchhhHHhC--CcccCccChHHHHHHHHHHHHhC-----CCCCCC--CCCCCCCCC
Confidence 46789999976653 24444699999999999998642 246899 688776554
No 79
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.39 E-value=3.8 Score=26.40 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=44.3
Q ss_pred cCCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHH----HHHhCCccccCCCCCCCCCccChhHHhhcCCHHH
Q 043988 7 TDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIA----SKLEGNITNISCPQLGCEARLEFEDCRLILPDDV 82 (151)
Q Consensus 7 ~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~----~~i~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~ 82 (151)
.++......|.+|. ...+.+-...|.-.||..|+..-+. ..|.....+-.|| .|... +...+...+ ..+
T Consensus 57 ~d~Dg~~d~C~vC~---~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~--~C~~~-pl~~l~~~c-~~~ 129 (142)
T 2lbm_A 57 RDSDGMDEQCRWCA---EGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCY--ICHPE-PLLDLVTAC-NSV 129 (142)
T ss_dssp BCTTSCBCSCSSSC---CCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCT--TTCCC-TTHHHHHHH-HHH
T ss_pred ecCCCCCCeecccC---CCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEee--cccCc-cHHHHHHHH-HHH
Confidence 34444566899997 3456677778999999999997663 2331111234788 46532 223332222 235
Q ss_pred HHHHHHHH
Q 043988 83 FARWGLAL 90 (151)
Q Consensus 83 ~~~~~~~~ 90 (151)
++.+++++
T Consensus 130 ~~~~~~~~ 137 (142)
T 2lbm_A 130 FENLEQLL 137 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 80
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=86.06 E-value=0.51 Score=26.22 Aligned_cols=36 Identities=22% Similarity=0.517 Sum_probs=27.4
Q ss_pred CCCCeeecccccccCCCCCceecCCC-CCccchHHHHHHHH
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGC-SHFNCTSCIVRYIA 48 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~~ 48 (151)
++++..-|.||.++. .+....| +-.||..|+++...
T Consensus 4 ~~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 4 GSSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp SCCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHHTT
T ss_pred cCcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHHcc
Confidence 344556799998875 3556689 88999999999763
No 81
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=84.29 E-value=0.54 Score=30.06 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=24.2
Q ss_pred CCeeecCcccCCcccccccc---ccCcccCcccchhh
Q 043988 98 HKKFYCPYKDCSSMLIDEGE---AIRKSNCPHCRRLF 131 (151)
Q Consensus 98 ~~~~~Cp~~~C~~~~~~~~~---~~~~~~C~~C~~~~ 131 (151)
....+|| .|+.++....+ ....+.|+.|++..
T Consensus 22 ~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 3456999 99999987743 35679999998853
No 82
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=82.82 E-value=0.74 Score=22.73 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.9
Q ss_pred ccCcccCcccchhhhhcCCC-CCCCCCC
Q 043988 118 AIRKSNCPHCRRLFCVQCKV-PWHSEFD 144 (151)
Q Consensus 118 ~~~~~~C~~C~~~~C~~C~~-~~H~~~~ 144 (151)
....+.|..++..+|..|.. ..|.+++
T Consensus 11 e~l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 11 ERLKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp SSCCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred CeeeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 56788999999999999998 6688775
No 83
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.74 E-value=0.15 Score=27.91 Aligned_cols=36 Identities=33% Similarity=0.820 Sum_probs=26.4
Q ss_pred ecCcccCCccccccccccCcccCcccchhhhhcCCCCCCCCC
Q 043988 102 YCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKVPWHSEF 143 (151)
Q Consensus 102 ~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~ 143 (151)
.|- .|...+.. ...+.|+.|+..||..|-.-.|+.+
T Consensus 17 ~C~--~C~~~~~~----~~~y~C~~C~~~FC~dCD~fiHe~L 52 (59)
T 1z60_A 17 FCY--GCQGELKD----QHVYVCAVCQNVFCVDCDVFVHDSL 52 (59)
T ss_dssp EET--TTTEECTT----SEEECCTTTTCCBCHHHHHTTTTTS
T ss_pred ccc--ccCcccCC----CccEECCccCcCcccchhHHHHhhc
Confidence 465 67665532 1237899999999999999888743
No 84
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.91 E-value=1.1 Score=26.30 Aligned_cols=32 Identities=19% Similarity=0.540 Sum_probs=25.6
Q ss_pred eecCcccCCccccccccccCcccCcccchhhhhc
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQ 134 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~~ 134 (151)
+.|| +|...-.........+.|..|+...|.-
T Consensus 37 VkCp--~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp EECT--TTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred EECC--CCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 5799 9998766666667889999999988753
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.84 E-value=4.2 Score=23.99 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=34.4
Q ss_pred CeeecccccccCCC---CCc-eecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 12 PSFVCEICVESRSL---YDS-FDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 12 ~~~~C~iC~~~~~~---~~~-~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
....|.||-++... .++ +....|+...|+.|+..-. +++ .-.|| .|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----keG--~q~Cp--qCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----REG--TQNCP--QCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----HTS--CSSCT--TTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----hcc--Ccccc--ccCCccc
Confidence 44699999998653 233 3345689999999987643 333 35888 6776554
No 86
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=77.76 E-value=2.3 Score=27.05 Aligned_cols=45 Identities=16% Similarity=0.446 Sum_probs=30.8
Q ss_pred cCCCCCCCC---CccChhHHhhcCCHHHHHHHHHHHHhhhhcCCCeeecCcccCCccccc
Q 043988 58 ISCPQLGCE---ARLEFEDCRLILPDDVFARWGLALCESALVGHKKFYCPYKDCSSMLID 114 (151)
Q Consensus 58 i~CP~~~C~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~ 114 (151)
+.|| .|+ ..+....|+.+|.++. .. +...+..+|++++|......
T Consensus 2 ~~CP--~Cg~~G~~V~~~Tvk~ll~~~~---------~~-~~~~~y~~C~~~~C~VvYf~ 49 (130)
T 2hu9_A 2 MRCP--ECSTEGWRVLPLTVGAHVKEGL---------WS-KIKGDFYFCSLESCEVVYFN 49 (130)
T ss_dssp CBCT--TTCCBCEEECHHHHHHHBCGGG---------GG-GCCSCEEECCCTTCSEEEEC
T ss_pred CcCC--CCCCcCcCccHHHHHHHhhHHH---------hc-cCCCCEEeECCCCCCEEEEC
Confidence 4688 565 4678888888877642 12 34456778999999865553
No 87
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=77.28 E-value=0.87 Score=28.16 Aligned_cols=29 Identities=24% Similarity=0.634 Sum_probs=21.9
Q ss_pred eecCcccCCcccccccc---ccCcccCcccchhh
Q 043988 101 FYCPYKDCSSMLIDEGE---AIRKSNCPHCRRLF 131 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~---~~~~~~C~~C~~~~ 131 (151)
.+|| .|+.++....+ ....+.|+.|++..
T Consensus 5 ~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 5 QYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred eeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 4798 99998877643 35578898888754
No 88
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=77.10 E-value=0.96 Score=26.27 Aligned_cols=8 Identities=25% Similarity=0.355 Sum_probs=3.7
Q ss_pred cCCccccc
Q 043988 107 DCSSMLID 114 (151)
Q Consensus 107 ~C~~~~~~ 114 (151)
.|+..+..
T Consensus 7 ~C~~~l~~ 14 (81)
T 2jrp_A 7 VCHHALER 14 (81)
T ss_dssp SSCSCCEE
T ss_pred CCCCcccc
Confidence 45544443
No 89
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=76.72 E-value=2.3 Score=23.95 Aligned_cols=36 Identities=14% Similarity=0.363 Sum_probs=27.3
Q ss_pred CCCCeeecccccccCCCCCceecCCCCCccchHHHH
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIV 44 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~ 44 (151)
+......|++|........++....|.-.|-..|+.
T Consensus 14 ~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~ 49 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG 49 (75)
T ss_dssp SSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHT
T ss_pred cCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCC
Confidence 345567799998776655688878898888888864
No 90
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=76.46 E-value=0.29 Score=25.34 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=24.7
Q ss_pred cccCcccCcccchhhhhcCCCCCCCCCCch
Q 043988 117 EAIRKSNCPHCRRLFCVQCKVPWHSEFDCS 146 (151)
Q Consensus 117 ~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~ 146 (151)
.....+.|..|+..+|..|....|.+++-.
T Consensus 14 ~e~l~lfC~~~~~~iC~~C~~~~H~~H~~~ 43 (50)
T 2yvr_A 14 HEPLVLFCESCDTLTCRDCQLNAHKDHQYQ 43 (50)
T ss_dssp TCBCCEEETTTTEEECHHHHHTTTTTCCEE
T ss_pred CCCEEEEeCCCCEEEecccCCCcCCCCcee
Confidence 356788999999999999988789887643
No 91
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=75.88 E-value=0.93 Score=30.59 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=41.9
Q ss_pred eecccccccCCCCC----ceecCCCCCccchHHHHHHHH--HHHhC--CccccCCCCCCCCCccChhHHhhcCCHHHHHH
Q 043988 14 FVCEICVESRSLYD----SFDVKGCSHFNCTSCIVRYIA--SKLEG--NITNISCPQLGCEARLEFEDCRLILPDDVFAR 85 (151)
Q Consensus 14 ~~C~iC~~~~~~~~----~~~~~~C~H~fC~~Cl~~~~~--~~i~~--~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~ 85 (151)
..||||...+...+ |+....|...|-..|+.-.-. ..+.+ ......|| .|...-+. ..+..|..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp--~C~~~~~~-~~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV--NCTERHPA-EWRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT--TTCCSSSC-HHHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECc--CCCCCCCH-HHHHHHHHHHHHH
Confidence 35999988777654 788888998888888643211 11211 11257999 68754443 2444444444444
Q ss_pred HHH
Q 043988 86 WGL 88 (151)
Q Consensus 86 ~~~ 88 (151)
+++
T Consensus 80 l~~ 82 (183)
T 3lqh_A 80 LKQ 82 (183)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 92
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.97 E-value=3.7 Score=23.41 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=41.7
Q ss_pred CCcccCCCCCeeecccccccCC-CCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhH
Q 043988 3 SNAETDDGTPSFVCEICVESRS-LYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFED 73 (151)
Q Consensus 3 s~a~~~~~~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~ 73 (151)
|+.....+.....| ||-.+.+ ...|+....|..-|-..|+....... .....+.|| .|........
T Consensus 2 ~~~~~~~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~--~~~~~~~C~--~C~~~~~~~~ 68 (79)
T 1wep_A 2 SSGSSGMALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENA--VDIDIYHCP--DCEAVFGPSI 68 (79)
T ss_dssp CSCCCCCCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHH--TTCSBBCCT--TTTTTSCSCB
T ss_pred CCCccCccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccc--cCCCeEECC--CcccccCCCc
Confidence 33444445566778 8987664 46788888899889999976432222 223468898 6875544333
No 93
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=74.67 E-value=1.1 Score=26.76 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=32.8
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChh
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFE 72 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~ 72 (151)
-..+.|..|+-.. ...+. -..|.+|..|+..++... =.|| -|+..|+..
T Consensus 26 ~G~~nCKsCWf~~--k~LV~--C~dHYLCl~CLtlmL~~S-------drCp--IC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFEN--KGLVE--CNNHYLCLNCLTLLLSVS-------NRCP--ICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCC--SSEEE--CSSCEEEHHHHHHTCSSS-------SEET--TTTEECCCC
T ss_pred cCcccChhhcccc--CCeee--ecchhhHHHHHHHHHhhc-------cCCc--ccCCcCCcc
Confidence 3567999998554 33333 247999999998876543 2677 477666543
No 94
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.21 E-value=4.4 Score=22.85 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=25.4
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchHHHHH
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVR 45 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 45 (151)
.....| ||........|+....|..-|-..|+..
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl 47 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGI 47 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSC
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEcc
Confidence 345678 8987766567888888988888888753
No 95
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=73.79 E-value=2.2 Score=25.69 Aligned_cols=16 Identities=19% Similarity=0.588 Sum_probs=14.0
Q ss_pred cchHHHHHHHHHHHhC
Q 043988 38 NCTSCIVRYIASKLEG 53 (151)
Q Consensus 38 fC~~Cl~~~~~~~i~~ 53 (151)
||++||..|......+
T Consensus 43 FCRNCLskWy~~aA~e 58 (105)
T 2o35_A 43 FCRNCLSNWYREAAEA 58 (105)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987754
No 96
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.40 E-value=1.2 Score=23.31 Aligned_cols=28 Identities=18% Similarity=0.495 Sum_probs=18.3
Q ss_pred eeecCcccCCccccccccccCcccCcccchh
Q 043988 100 KFYCPYKDCSSMLIDEGEAIRKSNCPHCRRL 130 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~ 130 (151)
..+|| .|+..+.... ......|+.|+..
T Consensus 19 ~k~CP--~CG~~~fm~~-~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCP--RCGPGVFMAD-HGDRWACGKCGYT 46 (50)
T ss_dssp SEECS--SSCSSCEEEE-CSSEEECSSSCCE
T ss_pred cccCC--CCCCceEEec-CCCeEECCCCCCE
Confidence 45899 7987443332 2356789988864
No 97
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=72.63 E-value=0.86 Score=26.39 Aligned_cols=31 Identities=19% Similarity=0.570 Sum_probs=24.7
Q ss_pred eecCcccCCccccccccccCcccCcccchhhhh
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCV 133 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~ 133 (151)
+.|| +|...-...+.....+.|..|+...|.
T Consensus 33 VkCp--~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECS--SSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred eECC--CCCCeeEEEecCccEEEccCCCCEEee
Confidence 3699 999876666667788999999988774
No 98
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=70.48 E-value=2 Score=25.82 Aligned_cols=17 Identities=12% Similarity=0.503 Sum_probs=14.1
Q ss_pred ccchHHHHHHHHHHHhC
Q 043988 37 FNCTSCIVRYIASKLEG 53 (151)
Q Consensus 37 ~fC~~Cl~~~~~~~i~~ 53 (151)
-||++||..|......+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999887653
No 99
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=70.24 E-value=9.2 Score=23.54 Aligned_cols=26 Identities=23% Similarity=0.591 Sum_probs=18.8
Q ss_pred eeecCcccCCccccccccccCcc-cCcccchh
Q 043988 100 KFYCPYKDCSSMLIDEGEAIRKS-NCPHCRRL 130 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~~~~~~~~-~C~~C~~~ 130 (151)
..+|. +|+..+... .... .||.|+..
T Consensus 73 ~~~C~--~CG~~~e~~---~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECK--DCSHVFKPN---ALDYGVCEKCHSK 99 (119)
T ss_dssp EEECS--SSSCEECSC---CSTTCCCSSSSSC
T ss_pred eEEcC--CCCCEEeCC---CCCCCcCccccCC
Confidence 46899 999888763 3456 79988753
No 100
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=69.57 E-value=1.2 Score=25.94 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=22.5
Q ss_pred CeeecCcccCCccccccccccCcccCcccchhhhh
Q 043988 99 KKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCV 133 (151)
Q Consensus 99 ~~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~ 133 (151)
....|| .|+....... ......|+.|++.|-.
T Consensus 26 ~~y~Cp--~CG~~~v~r~-atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 26 EDHACP--NCGEDRVDRQ-GTGIWQCSYCDYKFTG 57 (83)
T ss_dssp SCEECS--SSCCEEEEEE-ETTEEEETTTCCEEEC
T ss_pred ccCcCC--CCCCcceecc-CCCeEECCCCCCEecC
Confidence 456899 8987555442 3557899999987754
No 101
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=69.26 E-value=2 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=24.1
Q ss_pred eecCcccCCccccccccccCcccCcccchhhhh
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCV 133 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~ 133 (151)
+.|| +|...-...+.....+.|..|+...|.
T Consensus 8 VKCp--~C~niq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCP--DCEHEQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EECT--TTCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred EECC--CCCCceEEEecCceEEEcccCCCEEee
Confidence 5788 998866666666788999999887764
No 102
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=69.17 E-value=1.3 Score=27.83 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=21.9
Q ss_pred eeecCcccCCccccccc---cccCcccCcccchhh
Q 043988 100 KFYCPYKDCSSMLIDEG---EAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~~---~~~~~~~C~~C~~~~ 131 (151)
..+|| .|+.++.... .....+.|+.|++..
T Consensus 4 ~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 45899 9999888663 335678888888754
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=68.35 E-value=9.3 Score=24.15 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=34.2
Q ss_pred ccCCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHH----HHHHhCCccccCCCC
Q 043988 6 ETDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYI----ASKLEGNITNISCPQ 62 (151)
Q Consensus 6 ~~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~----~~~i~~~~~~i~CP~ 62 (151)
..++......|.+|.+ ..+.+--..|...||..|+...+ ...+.+...+-.|+.
T Consensus 50 ~~d~Dg~~~~C~vC~d---GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~ 107 (129)
T 3ql9_A 50 SRDSDGMDEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYI 107 (129)
T ss_dssp CBCTTSCBSSCTTTCC---CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTT
T ss_pred ccCCCCCCCcCeecCC---CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCC
Confidence 3444445567999974 34556666899999999999764 223322222457873
No 104
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=67.51 E-value=0.88 Score=23.79 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=23.4
Q ss_pred ccCcccCcccchhhhhcCCC-CCCCCCCc
Q 043988 118 AIRKSNCPHCRRLFCVQCKV-PWHSEFDC 145 (151)
Q Consensus 118 ~~~~~~C~~C~~~~C~~C~~-~~H~~~~C 145 (151)
....+.|..++..+|..|.. ..|.+++-
T Consensus 16 e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 44 (53)
T 2did_A 16 EALSLFCYEDQEAVCLICAISHTHRAHTV 44 (53)
T ss_dssp CBCCEEESSSCSEECHHHHTSSTTTTSCE
T ss_pred CeeeEEeCCCCeEEeccccCCCCCCCCcE
Confidence 56788999999999999987 67888764
No 105
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=67.07 E-value=1.9 Score=22.26 Aligned_cols=29 Identities=28% Similarity=0.596 Sum_probs=18.3
Q ss_pred eeecCcccCCc-cccccccccCcccCcccchhh
Q 043988 100 KFYCPYKDCSS-MLIDEGEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C~~-~~~~~~~~~~~~~C~~C~~~~ 131 (151)
.+.|| .|+. .+..+. ....+.|+.||..+
T Consensus 5 ~~~CP--~C~~~~l~~d~-~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCP--ACESAELIYDP-ERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCT--TTSCCCEEEET-TTTEEEESSSCCBC
T ss_pred cEeCc--CCCCcceEEcC-CCCeEECcccCCcc
Confidence 45788 8887 555542 34557787777643
No 106
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.55 E-value=2.5 Score=23.20 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=24.4
Q ss_pred eecCcccCCccccccccccCcccCcccchhhhh
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCV 133 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~ 133 (151)
+.|| +|...-...+.....+.|..|+...|.
T Consensus 16 VkCp--~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEEecCCeEEEccCcCCEEec
Confidence 4799 999866666666788999999988774
No 107
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=65.72 E-value=1.8 Score=20.68 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=10.7
Q ss_pred CeeecccccccCCC
Q 043988 12 PSFVCEICVESRSL 25 (151)
Q Consensus 12 ~~~~C~iC~~~~~~ 25 (151)
+.+.||+|+.++..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 46999999876643
No 108
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=65.41 E-value=0.67 Score=23.71 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=22.8
Q ss_pred ccCcccCcccchhhhhcCC-CCCCCCCCc
Q 043988 118 AIRKSNCPHCRRLFCVQCK-VPWHSEFDC 145 (151)
Q Consensus 118 ~~~~~~C~~C~~~~C~~C~-~~~H~~~~C 145 (151)
....+.|..|+..+|+.|. ...|.+++-
T Consensus 15 e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 43 (48)
T 3ddt_A 15 EKINIYCLTCEVPTCSMCKVFGIHKACEV 43 (48)
T ss_dssp SBCCEEETTTTEEECHHHHHHSTTTTSCE
T ss_pred ccccEEcCCCCeeEcccccCCCcCCCCcE
Confidence 4577899999999999997 456888764
No 109
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=64.51 E-value=7.5 Score=25.72 Aligned_cols=23 Identities=35% Similarity=0.933 Sum_probs=15.9
Q ss_pred eecCcccCCccccccccccCcccCcccch
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRR 129 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~ 129 (151)
..|+ .|+++...+ .+. .||.|+.
T Consensus 139 ~~C~--~CG~i~~~~---~p~-~CP~Cg~ 161 (170)
T 3pwf_A 139 YICP--ICGYTAVDE---APE-YCPVCGA 161 (170)
T ss_dssp EECT--TTCCEEESC---CCS-BCTTTCC
T ss_pred eEeC--CCCCeeCCC---CCC-CCCCCCC
Confidence 3599 999988732 222 8988875
No 110
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=63.93 E-value=3.4 Score=23.82 Aligned_cols=36 Identities=25% Similarity=0.693 Sum_probs=26.9
Q ss_pred CCCeeecCcccCCccccccccccCcccCcccchhhhhcCCC
Q 043988 97 GHKKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKV 137 (151)
Q Consensus 97 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 137 (151)
..+...|. .|+..|.. -.++..|-.||..||..|-.
T Consensus 16 d~~~~~C~--~C~~~Fs~---~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 16 DDEATHCR--QCEKEFSI---SRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCCBCT--TTCCBCBT---TBCCEECTTTCCEECSGGGC
T ss_pred CccCCccc--CcCCcccC---ccccccCCCCCCEEChHHhC
Confidence 34455788 78876653 35678899999999999965
No 111
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=63.57 E-value=5.8 Score=21.77 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=24.4
Q ss_pred CCCeeecccccccCCC-CCceecC-CCCCccchHHHH
Q 043988 10 GTPSFVCEICVESRSL-YDSFDVK-GCSHFNCTSCIV 44 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~~-~~~~~~~-~C~H~fC~~Cl~ 44 (151)
+++...|++|..++.. ..++... .|.-.|-..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 5667799999987653 4567777 788888899965
No 112
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.01 E-value=1.3 Score=23.87 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=23.7
Q ss_pred cccCcccCcccchhhhhcCCC-CCCCCCCc
Q 043988 117 EAIRKSNCPHCRRLFCVQCKV-PWHSEFDC 145 (151)
Q Consensus 117 ~~~~~~~C~~C~~~~C~~C~~-~~H~~~~C 145 (151)
.....+.|..++..+|..|.. ..|.+++-
T Consensus 21 ~e~L~lfC~~d~~~iC~~C~~s~eH~~H~~ 50 (59)
T 2yrg_A 21 GEKLLLFCQEDGKVICWLCERSQEHRGHHT 50 (59)
T ss_dssp CCBCCEEETTTCSEECHHHHTSTTTTTCCE
T ss_pred CceeeeecCCCCcEEecccCCCCcCCCCcE
Confidence 356788999999999999987 67888753
No 113
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=62.85 E-value=9.8 Score=20.56 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=24.8
Q ss_pred CCeeecccccccCCCCCceecCCCCCccch-HHHHHH
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCT-SCIVRY 46 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~-~Cl~~~ 46 (151)
.+...|.||.........+....|+-+||. .|.+.|
T Consensus 9 ~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 9 EPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 345799999742111234677789999997 888865
No 114
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=62.52 E-value=1.5 Score=24.48 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=24.7
Q ss_pred cccCcccCcccchhhhhcCCCCCCCCCCch
Q 043988 117 EAIRKSNCPHCRRLFCVQCKVPWHSEFDCS 146 (151)
Q Consensus 117 ~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~ 146 (151)
.....+.|..|+..+|..|....|.+++-.
T Consensus 25 ~e~l~lfC~~d~~~iC~~C~~~~H~~H~~~ 54 (72)
T 2csv_A 25 GKTMELFCQTDQTCICYLCMFQEHKNHSTV 54 (72)
T ss_dssp CCBCCEEESSSCCEECHHHHHTTTSSSCEE
T ss_pred CCceEEEeCCCCeEEccccCCCCCCCCCEe
Confidence 356788999999999999988789887643
No 115
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=62.25 E-value=2.7 Score=22.40 Aligned_cols=29 Identities=17% Similarity=0.482 Sum_probs=19.8
Q ss_pred eeecCcccCCccccccccccCcccCcccchhh
Q 043988 100 KFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~ 131 (151)
..+|| .|+..+.... ....+.|..|++..
T Consensus 18 ~~fCP--kCG~~~~ma~-~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCP--RCGPGVFLAE-HADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCT--TTTTTCCCEE-CSSEEECTTTCCCE
T ss_pred cccCc--CCCCceeEec-cCCEEECCCCCCEE
Confidence 45899 7987555432 24578898888763
No 116
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=61.04 E-value=4.1 Score=23.57 Aligned_cols=31 Identities=23% Similarity=0.642 Sum_probs=24.6
Q ss_pred eecCcccCCccccccccccCcccCcccchhhhh
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCV 133 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~ 133 (151)
+.|| +|...-...+.....+.|..|+...|.
T Consensus 35 VkCp--~C~~~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCP--GCLNITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp EECT--TSCSCEEEESBCSSCCCCSSSCCCCEE
T ss_pred EECC--CCCCeeEEEecCCeEEEccccCCEEec
Confidence 4699 999876666666788999999988774
No 117
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=60.39 E-value=1 Score=25.93 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=23.6
Q ss_pred ccCcccCcccchhhhhcCCC-CCCCCCCc
Q 043988 118 AIRKSNCPHCRRLFCVQCKV-PWHSEFDC 145 (151)
Q Consensus 118 ~~~~~~C~~C~~~~C~~C~~-~~H~~~~C 145 (151)
....+.|..|+..+|..|.. ..|.+++-
T Consensus 27 e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 55 (84)
T 2dja_A 27 EKVNMYCVSDDQLICALCKLVGRHRDHQV 55 (84)
T ss_dssp SCCCEEETTTTEEECHHHHHTSTTTTCCB
T ss_pred ccccEEcCCCCceEcccCcCCCCCCCCCc
Confidence 56789999999999999987 67888764
No 118
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=60.15 E-value=4 Score=26.01 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=22.4
Q ss_pred CeeecccccccCCC--CCceecCCCCCccchHH
Q 043988 12 PSFVCEICVESRSL--YDSFDVKGCSHFNCTSC 42 (151)
Q Consensus 12 ~~~~C~iC~~~~~~--~~~~~~~~C~H~fC~~C 42 (151)
..-.|.+|..++.. ..-.....|.|.+|..|
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 34689999988842 22244557999999988
No 119
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=59.97 E-value=7.3 Score=22.45 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=23.8
Q ss_pred CeeecccccccCCCCC-ceecCCCCCccchHHHHH
Q 043988 12 PSFVCEICVESRSLYD-SFDVKGCSHFNCTSCIVR 45 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~-~~~~~~C~H~fC~~Cl~~ 45 (151)
....|.+|...+.... -...-.||..||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3458999988776422 233457999999999654
No 120
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.38 E-value=3.1 Score=22.90 Aligned_cols=32 Identities=28% Similarity=0.735 Sum_probs=23.8
Q ss_pred eecCcccCCccccccccccCcccCcccchhhhhcCCCC
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKVP 138 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 138 (151)
..|...+|... +..-+.|..|+..||..-+-+
T Consensus 13 ~~Cs~~~Ck~~------~ll~f~C~~C~~~FC~~HR~~ 44 (63)
T 1x4v_A 13 NKCERAGCRQR------EMMKLTCERCSRNFCIKHRHP 44 (63)
T ss_dssp CCCCSTTCCCC------CSSCCBCSSSCCBCCHHHHST
T ss_pred CCCCccCCCCC------CccceECCCCCcccCcccCCc
Confidence 46887778754 234579999999999977654
No 121
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=58.88 E-value=1.3 Score=24.08 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=23.3
Q ss_pred cccCcccCcccchhhhhcCCC-CCCCCCCc
Q 043988 117 EAIRKSNCPHCRRLFCVQCKV-PWHSEFDC 145 (151)
Q Consensus 117 ~~~~~~~C~~C~~~~C~~C~~-~~H~~~~C 145 (151)
.....+.|..|+..+|..|.. ..|.+++-
T Consensus 16 ~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 45 (64)
T 2d8u_A 16 DEKINIYCLTCEVPTCSMCKVFGIHKACEV 45 (64)
T ss_dssp TCCCCSEESSSCCCCCSHHHHSSSTTSSCE
T ss_pred CCccceEcCcCCceeCccccCCCcCCCCCe
Confidence 356788999999999999975 47887654
No 122
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=58.87 E-value=20 Score=21.76 Aligned_cols=49 Identities=14% Similarity=0.438 Sum_probs=32.9
Q ss_pred CeeecccccccC------CCCCceecCCCCCccchHHHH--HHHHHHHhCCccccCCCC
Q 043988 12 PSFVCEICVESR------SLYDSFDVKGCSHFNCTSCIV--RYIASKLEGNITNISCPQ 62 (151)
Q Consensus 12 ~~~~C~iC~~~~------~~~~~~~~~~C~H~fC~~Cl~--~~~~~~i~~~~~~i~CP~ 62 (151)
+.-.|.+|+... ...+++.-..|+..|-..|+. .-+...+.++. -.||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~--W~C~~ 60 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALR--WQCIE 60 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSC--CCCTT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccc--ccccc
Confidence 456799998753 234677777899999999985 23444455543 46884
No 123
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=58.48 E-value=7.1 Score=24.44 Aligned_cols=33 Identities=24% Similarity=0.792 Sum_probs=25.3
Q ss_pred eeecCcccCCccccccccccCcccCcccchhhhhcCCC
Q 043988 100 KFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKV 137 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 137 (151)
...|. .|+..|.. -.++..|..||..||..|-.
T Consensus 69 ~~~C~--~C~~~Fs~---~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCM--ACGKGFSV---TVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCT--TTCCBCCS---SSCCEECTTTCCEECGGGSC
T ss_pred CCCCc--CcCCcccc---ccccccCCCCCeEEChHHhC
Confidence 34687 78776653 35678999999999999976
No 124
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=58.43 E-value=5.3 Score=21.65 Aligned_cols=27 Identities=22% Similarity=0.646 Sum_probs=18.3
Q ss_pred cCCCeeecCcccCCccccccccccCcccCcccchh
Q 043988 96 VGHKKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRL 130 (151)
Q Consensus 96 ~~~~~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~ 130 (151)
.......|| .|+.. ...+..|+.||++
T Consensus 26 ~~p~l~~c~--~cG~~------~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 26 TAPNLTECP--QCHGK------KLSHHICPNCGYY 52 (60)
T ss_dssp CCCCCEECT--TTCCE------ECTTBCCTTTCBS
T ss_pred cCCCceECC--CCCCE------eCCceEcCCCCcC
Confidence 345667898 78753 4566788888753
No 125
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=58.02 E-value=2.7 Score=27.39 Aligned_cols=32 Identities=16% Similarity=0.403 Sum_probs=21.4
Q ss_pred eecCcccCCccccccccccCcccCcccchhhhh
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCV 133 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~ 133 (151)
..||++.|+..++... ......|.+|+..+++
T Consensus 119 ~~c~~~~cg~g~fma~-h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 119 RECSNPTCGAGVFLAN-HKDRLYCGKCHSVYKV 150 (152)
T ss_dssp CBCCSTTSCSSSBEEE-CSSCEEESSSSSCCEE
T ss_pred CcCCCccCCCceEecc-cCCCcccCCCceEEEe
Confidence 3699888987544432 2346788888887764
No 126
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=57.70 E-value=9.5 Score=21.62 Aligned_cols=34 Identities=15% Similarity=0.433 Sum_probs=24.9
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHH
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVR 45 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 45 (151)
....|.+|-+..+..-....+.|.-.||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 3578999976442333455678999999999986
No 127
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=56.92 E-value=8 Score=22.59 Aligned_cols=34 Identities=21% Similarity=0.526 Sum_probs=23.3
Q ss_pred CeeecccccccCCCCC-ceecCCCCCccchHHHHH
Q 043988 12 PSFVCEICVESRSLYD-SFDVKGCSHFNCTSCIVR 45 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~-~~~~~~C~H~fC~~Cl~~ 45 (151)
....|.+|...+.... -...-.||..||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3458999988776432 233457999999999543
No 128
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=56.24 E-value=3.9 Score=23.31 Aligned_cols=42 Identities=19% Similarity=0.507 Sum_probs=28.1
Q ss_pred eecCcccCCccccccccccCcccCcccchhhhhcCCCCCCCCCCchhhhh
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKVPWHSEFDCSQFQK 150 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~ 150 (151)
..|...+|+.. +..-+.|..|+..||..-+.+. .+.|....+
T Consensus 15 ~~Cs~~~C~~~------dflpf~C~~C~~~FC~~HR~~e--~H~C~~~~~ 56 (75)
T 1wys_A 15 QHCQVQHCRQR------DFLPFVCDGCSGIFCLEHRSKD--SHGCSEVNV 56 (75)
T ss_dssp CCCSCTTTCCC------SCCCEECTTTCCEECSTTCSSG--GGTCCCCSS
T ss_pred CCcCcccCCCc------cceeeECcccCcCcCcccCCcc--ccCCCCCcc
Confidence 36776677754 3456899999999999776643 335554433
No 129
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=55.90 E-value=6.4 Score=25.66 Aligned_cols=32 Identities=28% Similarity=0.578 Sum_probs=23.2
Q ss_pred CeeecccccccCCC--CCceecCCCCCccchHHH
Q 043988 12 PSFVCEICVESRSL--YDSFDVKGCSHFNCTSCI 43 (151)
Q Consensus 12 ~~~~C~iC~~~~~~--~~~~~~~~C~H~fC~~Cl 43 (151)
..-.|.+|..++.. ..-.....|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 35689999987542 223445689999999995
No 130
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=55.80 E-value=5.5 Score=21.63 Aligned_cols=27 Identities=22% Similarity=0.605 Sum_probs=17.7
Q ss_pred cCCCeeecCcccCCccccccccccCcccCcccchh
Q 043988 96 VGHKKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRL 130 (151)
Q Consensus 96 ~~~~~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~ 130 (151)
.......|| .|+. ....+..|+.||++
T Consensus 26 ~~p~l~~c~--~cGe------~~~~H~vc~~CG~Y 52 (60)
T 3v2d_5 26 TPPTLVPCP--ECKA------MKPPHTVCPECGYY 52 (60)
T ss_dssp CCCCCEECT--TTCC------EECTTSCCTTTCEE
T ss_pred cCCceeECC--CCCC------eecceEEcCCCCcC
Confidence 345567898 7874 34556678888753
No 131
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=55.72 E-value=8.5 Score=25.27 Aligned_cols=40 Identities=20% Similarity=0.454 Sum_probs=27.9
Q ss_pred ccCCCCCeeecccccccCCCCCceecC--CCCCccchHHHHHHHH
Q 043988 6 ETDDGTPSFVCEICVESRSLYDSFDVK--GCSHFNCTSCIVRYIA 48 (151)
Q Consensus 6 ~~~~~~~~~~C~iC~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~~ 48 (151)
..+++.....|-+|.+ ..+.+... .|...||..|+...+-
T Consensus 72 ~~DeDG~~~yC~wC~~---Gg~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 72 QYDDDGYQSYCTICCG---GREVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp CBCTTSSBSSCTTTSC---CSEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred ccCCCCCcceeeEecC---CCeEEeeCCCCCCCchhHHHHHHhcC
Confidence 3455566678999974 33555554 5889999999987553
No 132
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.54 E-value=11 Score=21.49 Aligned_cols=33 Identities=27% Similarity=0.626 Sum_probs=23.6
Q ss_pred CCCeeecccccccCCC--CCceecCCCCCccchHH
Q 043988 10 GTPSFVCEICVESRSL--YDSFDVKGCSHFNCTSC 42 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~~--~~~~~~~~C~H~fC~~C 42 (151)
+...-.|..|...+.. +.......|.|..|.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 3455689999988763 22233457999999998
No 133
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=55.06 E-value=6.2 Score=25.94 Aligned_cols=76 Identities=14% Similarity=0.302 Sum_probs=43.2
Q ss_pred CCCeeecccccccCC-CCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHhhcCCHHHHHHHHH
Q 043988 10 GTPSFVCEICVESRS-LYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCRLILPDDVFARWGL 88 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~~ 88 (151)
.+....| +|..... ...++....|.-.|...|+.---.. ........|| .|...-.......-|++..++....
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~--~~~~~~~~C~--~C~~~~~~~~~~~~l~~~~~~~l~~ 79 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSE--AELIDEYVCP--QCQSTEDAMTVLTPLTEKDYEGLKR 79 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHH--HTTCSSCCCH--HHHHHHHHHTTTSBCCHHHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhh--ccCccCeecC--CCcchhccccccccCCHHHHHHHHH
Confidence 4556789 9987654 3457888889989999997432111 1223357888 5764322222233456655555554
Q ss_pred HH
Q 043988 89 AL 90 (151)
Q Consensus 89 ~~ 90 (151)
.+
T Consensus 80 il 81 (174)
T 2ri7_A 80 VL 81 (174)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 134
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=54.51 E-value=8.5 Score=22.52 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=23.0
Q ss_pred eecccccccCCCC-CceecCCCCCccchHHHHH
Q 043988 14 FVCEICVESRSLY-DSFDVKGCSHFNCTSCIVR 45 (151)
Q Consensus 14 ~~C~iC~~~~~~~-~~~~~~~C~H~fC~~Cl~~ 45 (151)
..|.+|...+... .-...-.||..||..|...
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 4699998877642 2234457999999999654
No 135
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=54.37 E-value=7 Score=21.63 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=26.1
Q ss_pred CCCCCeeecccccccCCCCCceecCCCCCccchHHHH
Q 043988 8 DDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIV 44 (151)
Q Consensus 8 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~ 44 (151)
..+.....| ||-.+.....|+....|..-|-..|+.
T Consensus 14 ~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvg 49 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAK 49 (68)
T ss_dssp CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTT
T ss_pred CCCCCceEe-ECCCcCCCCCEEECCCCCccccccccC
Confidence 445566788 998766655688877888778888854
No 136
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=53.62 E-value=8.1 Score=21.59 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=21.9
Q ss_pred eecccccccCCCCC-ceecCCCCCccchHHHH
Q 043988 14 FVCEICVESRSLYD-SFDVKGCSHFNCTSCIV 44 (151)
Q Consensus 14 ~~C~iC~~~~~~~~-~~~~~~C~H~fC~~Cl~ 44 (151)
..|.+|...+.... -...-.||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999987775321 23345799999999964
No 137
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=53.47 E-value=23 Score=22.51 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=10.7
Q ss_pred eeecCcccCCcccccc
Q 043988 100 KFYCPYKDCSSMLIDE 115 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~ 115 (151)
..+|. +|++.+...
T Consensus 70 ~~~C~--~CG~~~~~~ 83 (139)
T 3a43_A 70 VFKCR--NCNYEWKLK 83 (139)
T ss_dssp EEEET--TTCCEEEGG
T ss_pred cEECC--CCCCEEecc
Confidence 46899 999877654
No 138
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.00 E-value=14 Score=21.18 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=23.7
Q ss_pred CCCeeecccccccCCCCC-ceecCCCCCccchHHHH
Q 043988 10 GTPSFVCEICVESRSLYD-SFDVKGCSHFNCTSCIV 44 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~~~~-~~~~~~C~H~fC~~Cl~ 44 (151)
+.....|.+|...+.... -...-.||..||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 344558999987775322 23344799999999944
No 139
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=51.90 E-value=4.9 Score=23.53 Aligned_cols=33 Identities=24% Similarity=0.822 Sum_probs=24.8
Q ss_pred eecCcccCCccccccccccCcccCcccchhhhhcCCCCC
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKVPW 139 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~ 139 (151)
..|...+|... +..-+.|..|+..||..-+-+.
T Consensus 26 ~~C~~~~Ck~~------~~l~f~C~~C~~~FC~~HR~~e 58 (86)
T 1wfe_A 26 YSCSFKGCTDV------ELVAVICPYCEKNFCLRHRHQS 58 (86)
T ss_dssp EECCSTTCCCE------ESSCEECTTTCCEECGGGCSTG
T ss_pred CCCCCcCCCCC------CccceECCCCCcccccccCCcc
Confidence 46887788864 2355799999999999877643
No 140
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.32 E-value=8.1 Score=20.81 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=25.2
Q ss_pred CCCeeecccccccCC-CCCceecCCCCCccchHHHH
Q 043988 10 GTPSFVCEICVESRS-LYDSFDVKGCSHFNCTSCIV 44 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~ 44 (151)
++....|++|..++. ...|+....|..-|-..|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 345567999987764 35677777888778888853
No 141
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.95 E-value=28 Score=18.50 Aligned_cols=39 Identities=21% Similarity=0.506 Sum_probs=27.4
Q ss_pred cCCCCCeeecccccccCCCCCceecCCCCCccch-HHHHHHHHH
Q 043988 7 TDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCT-SCIVRYIAS 49 (151)
Q Consensus 7 ~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~-~Cl~~~~~~ 49 (151)
+.-......|.||.. .-.+....|+-+||. .|++.|-..
T Consensus 6 ~~~~~~~~~C~vC~~----~~kY~CPrC~~~yCSl~C~k~Hk~~ 45 (56)
T 2yqq_A 6 SGLKCSTVVCVICLE----KPKYRCPACRVPYCSVVCFRKHKEQ 45 (56)
T ss_dssp CCCCCCCCCCTTTCS----CCSEECTTTCCEESSHHHHHHHHHH
T ss_pred cccCCCCCccCcCcC----CCeeeCCCCCCCeeCHHHHHHHHhh
Confidence 333444557999975 234677889999997 888887544
No 142
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=49.43 E-value=23 Score=19.37 Aligned_cols=51 Identities=20% Similarity=0.401 Sum_probs=32.9
Q ss_pred CCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCC
Q 043988 9 DGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEA 67 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~ 67 (151)
+..+...|.||.+ ..+++....|...|...|+..-+.. +-++ .-.|| .|..
T Consensus 8 ~~~~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~-~P~g--~W~C~--~C~~ 58 (66)
T 2lri_C 8 NLAPGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTS-RPGT--GLRCR--SCSG 58 (66)
T ss_dssp CCCTTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCC-CCSS--SCCCT--TTTT
T ss_pred CCCCCCCcCCCCC---CCeEEECCCCCCceecccCCCccCc-CCCC--CEECc--cccC
Confidence 3445567999974 3467777789999999997643322 2122 34787 5754
No 143
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=48.68 E-value=4.3 Score=25.73 Aligned_cols=26 Identities=31% Similarity=0.643 Sum_probs=19.3
Q ss_pred ecCcccCCccccccccccCcccCcccchhh
Q 043988 102 YCPYKDCSSMLIDEGEAIRKSNCPHCRRLF 131 (151)
Q Consensus 102 ~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~ 131 (151)
.|| .|+.-...++ ...+.||.|+++|
T Consensus 29 ~CP--~C~seytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 29 PCP--QCNSEYTYED--GALLVCPECAHEW 54 (138)
T ss_dssp CCT--TTCCCCCEEC--SSSEEETTTTEEE
T ss_pred CCC--CCCCcceEec--CCeEECCcccccc
Confidence 577 8887666654 3458899998887
No 144
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=48.37 E-value=4.9 Score=24.08 Aligned_cols=32 Identities=25% Similarity=0.883 Sum_probs=18.8
Q ss_pred eecCcccCCccccccccccCcccCcccchh-----hhhcCCC
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRL-----FCVQCKV 137 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~-----~C~~C~~ 137 (151)
..|| .|+..+..++. .+.|+.|+.. +|..|.+
T Consensus 33 ~~CP--~Cq~eL~~~g~---~~hC~~C~~~f~~~a~CPdC~q 69 (101)
T 2jne_A 33 LHCP--QCQHVLDQDNG---HARCRSCGEFIEMKALCPDCHQ 69 (101)
T ss_dssp CBCS--SSCSBEEEETT---EEEETTTCCEEEEEEECTTTCS
T ss_pred ccCc--cCCCcceecCC---EEECccccchhhccccCcchhh
Confidence 5788 89888776532 3345555433 4555544
No 145
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.24 E-value=16 Score=25.69 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=33.5
Q ss_pred HHhhcCCHHHHHHHHHHHHhh-hhcCC--CeeecCcccCCcccccc-----ccccCcccCcccchhh
Q 043988 73 DCRLILPDDVFARWGLALCES-ALVGH--KKFYCPYKDCSSMLIDE-----GEAIRKSNCPHCRRLF 131 (151)
Q Consensus 73 ~i~~~l~~~~~~~~~~~~~~~-~~~~~--~~~~Cp~~~C~~~~~~~-----~~~~~~~~C~~C~~~~ 131 (151)
.+..-++++++..|++..... .+... ..-.|- +|...+... ......+.||.||...
T Consensus 168 ~l~~~i~~~lL~~Yerir~~~~g~avv~v~~~~C~--GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL 232 (256)
T 3na7_A 168 DLVEKTEPKIYSFYERIRRWAKNTSIVTIKKQACG--GCFIRLNDKIYTEVLTSGDMITCPYCGRIL 232 (256)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHGGGSEEECBTTBCT--TTCCBCCHHHHHHHHHSSSCEECTTTCCEE
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEeeCCccC--CCCeeeCHHHHHHHHCCCCEEECCCCCeeE
Confidence 445567889999999876532 22111 122466 777666544 1123458888888753
No 146
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=47.18 E-value=18 Score=18.38 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=23.0
Q ss_pred ecccccccCCCCCceecCCCCCccchHHHHH
Q 043988 15 VCEICVESRSLYDSFDVKGCSHFNCTSCIVR 45 (151)
Q Consensus 15 ~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 45 (151)
.|.||...-...+++.-..|...|-..|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCC
Confidence 4888876555556777778888888888754
No 147
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=46.09 E-value=20 Score=27.01 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=28.8
Q ss_pred ccCCCCCeeecccccccCCCCCceecC--CCCCccchHHHHHHH
Q 043988 6 ETDDGTPSFVCEICVESRSLYDSFDVK--GCSHFNCTSCIVRYI 47 (151)
Q Consensus 6 ~~~~~~~~~~C~iC~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~ 47 (151)
..++......|-+|.+ ..+.+... .|...||..|+...+
T Consensus 86 ~~D~DG~~~yCr~C~~---Gg~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 86 LYDDDGYQSYCSICCS---GETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp CBCSSSSBCSCTTTCC---CSSCEECCSTTCCCEECHHHHHHHT
T ss_pred ccCCCCCcccceEcCC---CCeEEEeCCCCCCcchHHHHHHHhc
Confidence 3455556678999974 33556655 789999999999876
No 148
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=44.05 E-value=24 Score=19.37 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=19.6
Q ss_pred CCCeeecccccccCCCCCceecCCCCCccchH
Q 043988 10 GTPSFVCEICVESRSLYDSFDVKGCSHFNCTS 41 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~ 41 (151)
.....-|..|-...... .+.. .|+..||..
T Consensus 12 ~~~~~rC~~C~kkvgl~-~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGVM-GFKC-KCGSTFCGS 41 (64)
T ss_dssp SCCSCSCTTTCCCCTTS-CEEC-TTSCEECSS
T ss_pred CCcCCcChhhCCccccc-CeEe-ecCCEeccc
Confidence 34456799997654332 3555 799999863
No 149
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.95 E-value=9.2 Score=22.51 Aligned_cols=34 Identities=18% Similarity=0.512 Sum_probs=20.3
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchHHHH
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIV 44 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~ 44 (151)
.....|.||...-....++....|...|-..|+.
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL 47 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSS
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCC
Confidence 3445799997654444566656676555555543
No 150
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=41.60 E-value=8.1 Score=22.33 Aligned_cols=47 Identities=26% Similarity=0.518 Sum_probs=27.1
Q ss_pred cCCCCCCCCCccChhHH-hhcCCHHHHH-------HHHHHHHhhhhcCCCeeecCcccCCccccc
Q 043988 58 ISCPQLGCEARLEFEDC-RLILPDDVFA-------RWGLALCESALVGHKKFYCPYKDCSSMLID 114 (151)
Q Consensus 58 i~CP~~~C~~~~~~~~i-~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~ 114 (151)
-+|| -|++.++..++ ...|.-+.++ +|.+.+. .-.+.|| .|+.-+..
T Consensus 9 ~~~P--lCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e------~F~FkCP--~CgEEFyG 63 (95)
T 2k5c_A 9 AKCP--ICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVE------EFVFKCP--VCGEEFYG 63 (95)
T ss_dssp EECS--SSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHH------HSEEECT--TTCCEEET
T ss_pred ccCC--cCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHH------HHhhcCC--CccHHHhc
Confidence 5799 69999998876 4544432221 2222211 2356799 88765543
No 151
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.93 E-value=28 Score=18.70 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=21.8
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYI 47 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~ 47 (151)
+.|..|-..+.....+. .=+..||..|..+.+
T Consensus 34 F~C~~C~~~L~~~~~~~--~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYA--VERRAYCEGCYVATL 65 (72)
T ss_dssp CBCSSSCCBCTTSCEEE--SSSCEEEHHHHHHHH
T ss_pred CcccccCCcCCcCcCEe--eCCeEECHHHHHHHH
Confidence 57888877775433333 347889999987655
No 152
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=40.64 E-value=9.3 Score=23.82 Aligned_cols=32 Identities=28% Similarity=0.868 Sum_probs=23.7
Q ss_pred eecCcccCCccccccccccCcccCcccchhhhhcCCC
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRLFCVQCKV 137 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 137 (151)
..|. .|+..|.. -.++..|..||..||..|-.
T Consensus 20 ~~C~--~C~~~Fs~---~~RkHHCR~CG~ifC~~Cs~ 51 (120)
T 1y02_A 20 PSCK--SCGAHFAN---TARKQTCLDCKKNFCMTCSS 51 (120)
T ss_dssp CCCT--TTCCCCSS---GGGCEECTTTCCEECGGGEE
T ss_pred Cccc--CcCCcccc---ccccccCCCCCCeeCHHHhC
Confidence 3576 77766543 24677899999999999954
No 153
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=40.56 E-value=7.7 Score=21.58 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=17.5
Q ss_pred CeeecCcccCCccccccccccCcccCcccchhh
Q 043988 99 KKFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLF 131 (151)
Q Consensus 99 ~~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~ 131 (151)
+.+-|| .|.+.+.... ....+.|+.|+..|
T Consensus 7 ~iL~CP--~ck~~L~~~~-~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCP--VTKGRLEYHQ-DKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCS--SSCCBCEEET-TTTEEEETTTTEEE
T ss_pred hheECC--CCCCcCeEeC-CCCEEEcCCCCcEe
Confidence 345688 7877666643 23445666665543
No 154
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=40.56 E-value=39 Score=18.91 Aligned_cols=33 Identities=15% Similarity=0.475 Sum_probs=24.5
Q ss_pred CCeeecccccccCCCCCceecC--CCCCccchHHHH
Q 043988 11 TPSFVCEICVESRSLYDSFDVK--GCSHFNCTSCIV 44 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~--~C~H~fC~~Cl~ 44 (151)
+....| ||-...+...|+... .|...|-..|+.
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg 48 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI 48 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEc
Confidence 456778 797765556788877 798888888863
No 155
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=40.23 E-value=6 Score=25.68 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=17.6
Q ss_pred eeecCcccC-C------ccccccccccCcccCcccchhh
Q 043988 100 KFYCPYKDC-S------SMLIDEGEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C-~------~~~~~~~~~~~~~~C~~C~~~~ 131 (151)
.+.||+|+| . ..|...+.....+.|..|.+.+
T Consensus 105 vl~C~Np~CITn~E~v~s~F~v~~~~~~~lrC~YCe~~~ 143 (149)
T 2yww_A 105 TLKCTNPNCITNKEKVRGKFKIESKNPLKIRCYYCEKFL 143 (149)
T ss_dssp SSCCSCTTSGGGTSCCCCEEEEEEETTEEEEETTTCCBC
T ss_pred eEEcCCCCCCcCCcccccEEEEEeCCCCEEEeeCCCcCh
Confidence 356999999 3 1222212223446777776643
No 156
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=40.21 E-value=23 Score=20.53 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCeeecccccccC--CCCCceecCCCCCccchHHHHH
Q 043988 11 TPSFVCEICVESR--SLYDSFDVKGCSHFNCTSCIVR 45 (151)
Q Consensus 11 ~~~~~C~iC~~~~--~~~~~~~~~~C~H~fC~~Cl~~ 45 (151)
+....|.||.... ...+++....|.-.|-..|+..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p 59 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 59 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCC
Confidence 4557899998643 3345666667887788888653
No 157
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=39.46 E-value=31 Score=19.13 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=25.6
Q ss_pred CCCCCeeecccccccC--CCCCceecCCCCCccchHHHH
Q 043988 8 DDGTPSFVCEICVESR--SLYDSFDVKGCSHFNCTSCIV 44 (151)
Q Consensus 8 ~~~~~~~~C~iC~~~~--~~~~~~~~~~C~H~fC~~Cl~ 44 (151)
........|.||.... ...+++....|.-.|-..|+.
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~ 49 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 49 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC
Confidence 3445567899997643 345666667888788888865
No 158
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=45.45 E-value=6.3 Score=15.93 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=8.5
Q ss_pred ccCcccchhhhhc
Q 043988 122 SNCPHCRRLFCVQ 134 (151)
Q Consensus 122 ~~C~~C~~~~C~~ 134 (151)
+.|+.|++.|=..
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 4677787776543
No 159
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=38.94 E-value=8.1 Score=21.62 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=17.2
Q ss_pred eeecCcccCCccccccccccCcccCcccchhh
Q 043988 100 KFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~ 131 (151)
.+-|| .|.+.+..... ...+.|+.|+..|
T Consensus 8 iL~CP--~ck~~L~~~~~-~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCP--VCKGRLEFQRA-QAELVCNADRLAF 36 (70)
T ss_dssp CCBCT--TTCCBEEEETT-TTEEEETTTTEEE
T ss_pred heECC--CCCCcCEEeCC-CCEEEcCCCCcee
Confidence 45688 78776666432 3446676665543
No 160
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.24 E-value=24 Score=19.47 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=23.2
Q ss_pred CCCCeeecccccccCCC-CCceecCCCCCccchHHHH
Q 043988 9 DGTPSFVCEICVESRSL-YDSFDVKGCSHFNCTSCIV 44 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~-~~~~~~~~C~H~fC~~Cl~ 44 (151)
+......| ||-..... ..|+....|.--|-..|+.
T Consensus 12 ~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg 47 (72)
T 1wee_A 12 VDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIG 47 (72)
T ss_dssp SCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTT
T ss_pred CCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeec
Confidence 34567789 68766543 3577777787667777753
No 161
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=37.97 E-value=14 Score=21.18 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=17.6
Q ss_pred eecCcccCCccccccccccCcccCcccchh
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRL 130 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~ 130 (151)
++|. +|+....... ......|+.|+..
T Consensus 38 I~Cn--DC~~~s~v~~-h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 38 ILCN--DCNGRSTVQF-HILGMKCKICESY 64 (79)
T ss_dssp EEES--SSCCEEEEEC-CTTCCCCTTTSCC
T ss_pred EECC--CCCCCccCCc-eeecccCcCCCCc
Confidence 5788 9998776643 2333478877653
No 162
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=37.71 E-value=17 Score=19.30 Aligned_cols=27 Identities=22% Similarity=0.678 Sum_probs=15.8
Q ss_pred eecCcccCCc-cccccccccCcccCcccchh
Q 043988 101 FYCPYKDCSS-MLIDEGEAIRKSNCPHCRRL 130 (151)
Q Consensus 101 ~~Cp~~~C~~-~~~~~~~~~~~~~C~~C~~~ 130 (151)
..|| .|+. .++.+ .....+.|..||..
T Consensus 12 ~~Cp--~C~~~~lv~D-~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCP--NHPDAILVED-YRAGDMICPECGLV 39 (58)
T ss_dssp CSBT--TBSSSCCEEC-SSSCCEECTTTCCE
T ss_pred ccCc--CCCCCceeEe-CCCCeEEeCCCCCE
Confidence 4699 8876 33332 33455777777653
No 163
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=37.35 E-value=13 Score=18.50 Aligned_cols=9 Identities=22% Similarity=0.563 Sum_probs=3.8
Q ss_pred ccCcccchh
Q 043988 122 SNCPHCRRL 130 (151)
Q Consensus 122 ~~C~~C~~~ 130 (151)
+.|+.|++.
T Consensus 30 ~~C~~C~~~ 38 (57)
T 1bbo_A 30 YHCTYCNFS 38 (57)
T ss_dssp EECSSSSCE
T ss_pred ccCCCCCch
Confidence 344444443
No 164
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=37.25 E-value=6.4 Score=17.71 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=13.4
Q ss_pred hhhcCCCCCCCCCCchhh
Q 043988 131 FCVQCKVPWHSEFDCSQF 148 (151)
Q Consensus 131 ~C~~C~~~~H~~~~C~~~ 148 (151)
.|+.|+.+-|...+|...
T Consensus 8 ~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 8 RCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp BCTTTSCBSSCGGGCCSS
T ss_pred EEEECCccccCHhHCccc
Confidence 477888888877777654
No 165
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=36.95 E-value=7.9 Score=21.53 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=17.2
Q ss_pred eeecCcccCCccccccccccCcccCcccchhh
Q 043988 100 KFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~ 131 (151)
.+-|| .|.+.+.... ....+.|+.|+..|
T Consensus 8 iL~CP--~ck~~L~~~~-~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCP--LCKGPLVFDK-SKDELICKGDRLAF 36 (68)
T ss_dssp ECBCT--TTCCBCEEET-TTTEEEETTTTEEE
T ss_pred heECC--CCCCcCeEeC-CCCEEEcCCCCcEe
Confidence 34688 7777666643 23456676666543
No 166
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.94 E-value=16 Score=25.07 Aligned_cols=33 Identities=18% Similarity=0.545 Sum_probs=22.8
Q ss_pred eeecccccccCCCC-CceecCCCCCccchHHHHH
Q 043988 13 SFVCEICVESRSLY-DSFDVKGCSHFNCTSCIVR 45 (151)
Q Consensus 13 ~~~C~iC~~~~~~~-~~~~~~~C~H~fC~~Cl~~ 45 (151)
...|.+|...+... .-...-.||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 35899998777532 2233457999999999553
No 167
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.83 E-value=20 Score=16.78 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=12.6
Q ss_pred CcccCCCCCeeecccccccC
Q 043988 4 NAETDDGTPSFVCEICVESR 23 (151)
Q Consensus 4 ~a~~~~~~~~~~C~iC~~~~ 23 (151)
.......+..+.|++|-..+
T Consensus 3 ~~~~h~~~k~~~C~~C~k~F 22 (45)
T 2epu_A 3 SGSSGTGQKPFECTHCGKSF 22 (45)
T ss_dssp CCCCCCSCCSEEETTTTEEE
T ss_pred CCCCCCCCcCccCCCCCCcc
Confidence 33444556778888885444
No 168
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=35.62 E-value=23 Score=23.72 Aligned_cols=24 Identities=21% Similarity=0.672 Sum_probs=16.1
Q ss_pred eecCcccCCccccccccccCcccCcccch
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRR 129 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~ 129 (151)
..|+ .|+++...+ ..+. .||.|+.
T Consensus 156 ~~C~--~CG~~~~g~--~~p~-~CP~C~~ 179 (191)
T 1lko_A 156 WRCR--NCGYVHEGT--GAPE-LCPACAH 179 (191)
T ss_dssp EEET--TTCCEEEEE--ECCS-BCTTTCC
T ss_pred EEEC--CCCCEeeCC--CCCC-CCCCCcC
Confidence 4598 999887632 2333 8888875
No 169
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.57 E-value=44 Score=20.22 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCccChhHHhhcCCH---HHHH-HHHHHHHh-hhhcCCC------eeecCcccCCccccccccccCcccCcccchhh
Q 043988 66 EARLEFEDCRLILPD---DVFA-RWGLALCE-SALVGHK------KFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLF 131 (151)
Q Consensus 66 ~~~~~~~~i~~~l~~---~~~~-~~~~~~~~-~~~~~~~------~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~ 131 (151)
...++..+|..+|+- ...+ .|+.+.-- ..+...+ ...|- +|++.| .+ ....-..||.|+..+
T Consensus 22 ~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g~~L~v~p~~C~--~CG~~F-~~-~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 22 EGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREGMVLLIKPAQCR--KCGFVF-KA-EINIPSRCPKCKSEW 94 (105)
T ss_dssp TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTTTEEEEECCCBBT--TTCCBC-CC-CSSCCSSCSSSCCCC
T ss_pred cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEECcChh--hCcCee-cc-cCCCCCCCcCCCCCc
Confidence 356777777766654 2222 33332111 1122211 12477 899887 22 223346888776543
No 170
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=35.53 E-value=20 Score=21.56 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=33.9
Q ss_pred CeeecccccccCCC-CCceecC-CCCCccchHHHHHHH--HHHH-hCCccccCCCCCCCCC
Q 043988 12 PSFVCEICVESRSL-YDSFDVK-GCSHFNCTSCIVRYI--ASKL-EGNITNISCPQLGCEA 67 (151)
Q Consensus 12 ~~~~C~iC~~~~~~-~~~~~~~-~C~H~fC~~Cl~~~~--~~~i-~~~~~~i~CP~~~C~~ 67 (151)
+.+.|++|..++.. .+++... .|.-.|-..|+.--- ...| .+......|| .|..
T Consensus 2 ~~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp--~C~~ 60 (105)
T 2xb1_A 2 LVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACD--LCLK 60 (105)
T ss_dssp CCCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCH--HHHH
T ss_pred CcCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECc--cccC
Confidence 45789999887643 4566665 788888888865321 1222 2233467898 5653
No 171
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=35.42 E-value=8.5 Score=21.47 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=16.5
Q ss_pred eeecCcccCCccccccccccCcccCcccchhh
Q 043988 100 KFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~ 131 (151)
.+-|| .|.+.+.... ....+.|+.|+..|
T Consensus 8 iL~CP--~ck~~L~~~~-~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACP--ICKGPLKLSA-DKTELISKGAGLAY 36 (69)
T ss_dssp TCCCT--TTCCCCEECT-TSSEEEETTTTEEE
T ss_pred heeCC--CCCCcCeEeC-CCCEEEcCCCCcEe
Confidence 34677 7777666543 23446666665543
No 172
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=35.15 E-value=10 Score=20.09 Aligned_cols=13 Identities=38% Similarity=1.083 Sum_probs=8.2
Q ss_pred cCcccCcccchhh
Q 043988 119 IRKSNCPHCRRLF 131 (151)
Q Consensus 119 ~~~~~C~~C~~~~ 131 (151)
..-+.|+.|++.|
T Consensus 30 ekp~~C~~C~k~F 42 (60)
T 4gzn_C 30 YRPRSCPECGKCF 42 (60)
T ss_dssp CCCEECTTTCCEE
T ss_pred CcCeECCCCCCCc
Confidence 4456777776665
No 173
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.52 E-value=13 Score=20.09 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=34.4
Q ss_pred cccCCCCCCCCCccChhH-HhhcCCHHHHHHHHHHHHhhhhcCCCeeecCcccCCcccccc---------ccccCcccCc
Q 043988 56 TNISCPQLGCEARLEFED-CRLILPDDVFARWGLALCESALVGHKKFYCPYKDCSSMLIDE---------GEAIRKSNCP 125 (151)
Q Consensus 56 ~~i~CP~~~C~~~~~~~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~---------~~~~~~~~C~ 125 (151)
.++.|+.+.|+..+.... +... +.... .....+.|+.+.|+..+... ......+.|+
T Consensus 6 ~~~~C~~~~C~~~f~~~~~L~~H------------~~~~H-~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 72 (79)
T 2dlk_A 6 SGMPCDFPGCGRIFSNRQYLNHH------------KKYQH-IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72 (79)
T ss_dssp SSEECSSTTTCCEESSHHHHHHH------------HHHGG-GSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred CCccCCCCCCcCccCCHHHHHHH------------HHHHh-CCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCC
Confidence 356787667887665432 2211 00011 12334678855698777554 1234557888
Q ss_pred ccchhh
Q 043988 126 HCRRLF 131 (151)
Q Consensus 126 ~C~~~~ 131 (151)
.|++.|
T Consensus 73 ~C~k~F 78 (79)
T 2dlk_A 73 FSGPSS 78 (79)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 888765
No 174
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=34.41 E-value=25 Score=18.01 Aligned_cols=28 Identities=25% Similarity=0.559 Sum_probs=17.2
Q ss_pred ecCcccCCcccccccc-ccCcccCcccchhh
Q 043988 102 YCPYKDCSSMLIDEGE-AIRKSNCPHCRRLF 131 (151)
Q Consensus 102 ~Cp~~~C~~~~~~~~~-~~~~~~C~~C~~~~ 131 (151)
.|- .|+..+...+- ..+.+.||.||+..
T Consensus 5 ~C~--rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 5 RCG--KCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp CCC--CTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred Eee--ccCCCccHHHHhhCCCcccCccCcEE
Confidence 355 67766655532 35677888887643
No 175
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=34.27 E-value=91 Score=19.90 Aligned_cols=57 Identities=18% Similarity=0.367 Sum_probs=20.5
Q ss_pred CCCeeecccccccCC-------------CCCceecCCCCCccch-HHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 10 GTPSFVCEICVESRS-------------LYDSFDVKGCSHFNCT-SCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~-------------~~~~~~~~~C~H~fC~-~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
.+..+.|++|-..+. ....+....|+-.|=. .=|..++.... +..++.|+ .|+..+.
T Consensus 18 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~--~C~~~f~ 88 (190)
T 2i13_A 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT--GEKPYKCP--ECGKSFS 88 (190)
T ss_dssp -------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHH--CCCCEECT--TTCCEES
T ss_pred CCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcC--CCCCccCc--ccCCccC
Confidence 345677888855432 1233444456655533 23455554432 33356777 5776554
No 176
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=34.07 E-value=51 Score=19.04 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=6.3
Q ss_pred ccCCCCCCCCCcc
Q 043988 57 NISCPQLGCEARL 69 (151)
Q Consensus 57 ~i~CP~~~C~~~~ 69 (151)
++.|+.++|+..+
T Consensus 6 ~~~C~~~~C~~~f 18 (119)
T 2jp9_A 6 PFMCAYPGCNKRY 18 (119)
T ss_dssp CBCCCSTTSCCCB
T ss_pred eeeCCCCCCcchh
Confidence 3555533455444
No 177
>4fyy_B Aspartate carbamoyltransferase regulatory chain; pyrimidine nucleotide biosynthesis, feedback inhibition, all transferase; HET: UTP CTP; 1.94A {Escherichia coli} PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G* 1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B* 1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B 1tug_B* 1xjw_B* ...
Probab=34.07 E-value=8.6 Score=25.08 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=19.1
Q ss_pred eeecCcccCCcccccc--------ccccCcccCcccchhh
Q 043988 100 KFYCPYKDCSSMLIDE--------GEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~--------~~~~~~~~C~~C~~~~ 131 (151)
.+.||+|+|-.-.... ......+.|..|.+.|
T Consensus 106 vi~C~Np~CIT~~E~v~~~f~v~~~~~~~~~rC~YCe~~~ 145 (153)
T 4fyy_B 106 VLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEF 145 (153)
T ss_dssp SCCCSCTTBTTTTSSCCCEEEEEECSSSEEEEETTTCCEE
T ss_pred eEECCCCCcccCCCCCCCEEEEEEcCCCCEEEeeCCCCEe
Confidence 3579999996543322 1223357787776643
No 178
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=34.06 E-value=15 Score=15.91 Aligned_cols=18 Identities=28% Similarity=0.611 Sum_probs=14.3
Q ss_pred hhhcCCCCCCCCCCchhh
Q 043988 131 FCVQCKVPWHSEFDCSQF 148 (151)
Q Consensus 131 ~C~~C~~~~H~~~~C~~~ 148 (151)
.|+.|+..-|....|.+.
T Consensus 4 ~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 4 VCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp BCTTTCCBSSCTTTTTCC
T ss_pred eeEeCCCCCcccccCCCc
Confidence 588898888888888754
No 179
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=33.71 E-value=9.8 Score=15.30 Aligned_cols=9 Identities=44% Similarity=1.121 Sum_probs=5.2
Q ss_pred cCcccchhh
Q 043988 123 NCPHCRRLF 131 (151)
Q Consensus 123 ~C~~C~~~~ 131 (151)
.|+.|++.|
T Consensus 3 ~C~~C~k~f 11 (27)
T 1znf_A 3 KCGLCERSF 11 (27)
T ss_dssp BCSSSCCBC
T ss_pred cCCCCCCcC
Confidence 466666554
No 180
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.69 E-value=32 Score=19.13 Aligned_cols=9 Identities=22% Similarity=0.870 Sum_probs=5.3
Q ss_pred ccCCCCCCCCC
Q 043988 57 NISCPQLGCEA 67 (151)
Q Consensus 57 ~i~CP~~~C~~ 67 (151)
.+.|| .|+.
T Consensus 45 ~irCp--~CG~ 53 (70)
T 1twf_L 45 AVRCK--DCGH 53 (70)
T ss_dssp TTCCS--SSCC
T ss_pred CccCC--CCCc
Confidence 45677 4554
No 181
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=33.50 E-value=9.8 Score=15.55 Aligned_cols=10 Identities=40% Similarity=0.859 Sum_probs=5.7
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 4566666554
No 182
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=33.43 E-value=7.9 Score=25.24 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=17.7
Q ss_pred eeecCcccC-C------ccccccccc-cCcccCcccchhh
Q 043988 100 KFYCPYKDC-S------SMLIDEGEA-IRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C-~------~~~~~~~~~-~~~~~C~~C~~~~ 131 (151)
.+.||+|+| . ..|...+.. ...+.|..|.+.|
T Consensus 105 v~~C~Np~CITn~E~v~s~F~v~~~~~~~~lrC~YCe~~~ 144 (153)
T 2be7_D 105 VFPCPNSNCITHGEPVTSSFSIKKTKGNIGLKCKYCEKTF 144 (153)
T ss_dssp SSCCSCTTCTTSSSSCCCCEEEEEETTEEEEEETTTCCEE
T ss_pred eEEcCCCCCCcCCcccccEEEEeecCCCCEEEeeCCCCEe
Confidence 357999999 3 122221211 3457787776643
No 183
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.24 E-value=16 Score=25.28 Aligned_cols=28 Identities=29% Similarity=0.751 Sum_probs=20.7
Q ss_pred cCCccccccccccCcccCcccchhhhhcCCC
Q 043988 107 DCSSMLIDEGEAIRKSNCPHCRRLFCVQCKV 137 (151)
Q Consensus 107 ~C~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 137 (151)
.|+..|.. -.++..|..||..||..|-.
T Consensus 169 ~C~~~F~~---~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 169 RCRVQFGV---MTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp TTCCBCBT---TBCCEECTTTCCEECTTTCC
T ss_pred CcCCCCCc---cccccccCCCcCEeChhhcC
Confidence 55544432 34678999999999999976
No 184
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.82 E-value=37 Score=18.01 Aligned_cols=31 Identities=19% Similarity=0.474 Sum_probs=19.7
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVRY 46 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 46 (151)
+.|..|-..+....++. .=+..||..|....
T Consensus 32 F~C~~C~~~L~~~~~~~--~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTA--VEDQYYCVDCYKNF 62 (69)
T ss_dssp TBCTTTCCBCTTSCEEE--CSSCEEEHHHHHHH
T ss_pred CEECCCCCCCCCCccEe--ECCEEECHHHhHHH
Confidence 46777776665433333 34778998887654
No 185
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=32.48 E-value=18 Score=18.26 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=4.7
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 31 ~~C~~C~~~f 40 (60)
T 2adr_A 31 YPCGLCNRAF 40 (60)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCCcc
Confidence 4455554443
No 186
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=32.45 E-value=23 Score=16.40 Aligned_cols=11 Identities=36% Similarity=1.235 Sum_probs=8.6
Q ss_pred cCCCCCCCCCc
Q 043988 58 ISCPQLGCEAR 68 (151)
Q Consensus 58 i~CP~~~C~~~ 68 (151)
++||.++|...
T Consensus 2 ~~CPtpGC~g~ 12 (31)
T 2jx1_A 2 LKCPTPGCDGS 12 (31)
T ss_dssp CSCSCTTCCSS
T ss_pred CcCCCCCcccc
Confidence 67999899854
No 187
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.14 E-value=8.6 Score=15.64 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=6.0
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 4566666654
No 188
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.02 E-value=50 Score=18.15 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=20.7
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYI 47 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~ 47 (151)
+.|..|-..+...+.+.+..=+..||..|..+.+
T Consensus 42 F~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 42 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred CCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 5677777666433334322346788888876544
No 189
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=31.81 E-value=11 Score=21.11 Aligned_cols=25 Identities=28% Similarity=0.761 Sum_probs=15.3
Q ss_pred eecCcccCCccccccccccCcccCcccchh
Q 043988 101 FYCPYKDCSSMLIDEGEAIRKSNCPHCRRL 130 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~ 130 (151)
+-|| |+.....+. ......|| ||+.
T Consensus 5 v~C~---C~~~~~~~~-~~kT~~C~-CG~~ 29 (71)
T 1gh9_A 5 FRCD---CGRALYSRE-GAKTRKCV-CGRT 29 (71)
T ss_dssp EEET---TSCCEEEET-TCSEEEET-TTEE
T ss_pred EECC---CCCEEEEcC-CCcEEECC-CCCe
Confidence 3465 777666654 35566777 7764
No 190
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=31.57 E-value=55 Score=22.52 Aligned_cols=28 Identities=39% Similarity=0.832 Sum_probs=15.5
Q ss_pred ecCcccCCcccccc-------ccccCcccCcccch
Q 043988 102 YCPYKDCSSMLIDE-------GEAIRKSNCPHCRR 129 (151)
Q Consensus 102 ~Cp~~~C~~~~~~~-------~~~~~~~~C~~C~~ 129 (151)
.||+-.|++.-... +....++.||.|+-
T Consensus 108 ~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~D 142 (215)
T 4dgl_A 108 YCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMD 142 (215)
T ss_dssp BCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCC
T ss_pred cCCccccCCCceeccccCCCCCccceeEeCCCccc
Confidence 69998888543222 12334556665543
No 191
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=31.54 E-value=17 Score=18.93 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=18.9
Q ss_pred eeecCcccCCcccccc------ccccCcccCcccchhhhh
Q 043988 100 KFYCPYKDCSSMLIDE------GEAIRKSNCPHCRRLFCV 133 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~------~~~~~~~~C~~C~~~~C~ 133 (151)
.+.|+ .|+..+... ......+.|+.|++.|=.
T Consensus 14 ~~~C~--~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 14 SFKCP--VCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp EEECS--SSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred CccCC--CCCchhccHHHhHhhcCCCCCEECCCCCCcccc
Confidence 35677 787654332 122345778888877643
No 192
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.75 E-value=10 Score=15.67 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=8.7
Q ss_pred ccCcccchhhhhc
Q 043988 122 SNCPHCRRLFCVQ 134 (151)
Q Consensus 122 ~~C~~C~~~~C~~ 134 (151)
+.|+.|++.|-..
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 4677788777543
No 193
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.51 E-value=27 Score=18.38 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=18.9
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVRY 46 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 46 (151)
+.|..|-..+.....+. .=+..||..|....
T Consensus 32 F~C~~C~~~L~~~~~~~--~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYE--RKGLAYCETHYNQL 62 (66)
T ss_dssp CBCTTTCCBCSSSCCEE--ETTEEECHHHHHHH
T ss_pred CEECCCCCCCCCCceEe--ECCcEECHHHHHHH
Confidence 56777766665434333 34677888887543
No 194
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=31.48 E-value=8 Score=17.02 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=16.0
Q ss_pred cccCCCCCCCCCccChhHHhhcCC
Q 043988 56 TNISCPQLGCEARLEFEDCRLILP 79 (151)
Q Consensus 56 ~~i~CP~~~C~~~~~~~~i~~~l~ 79 (151)
+.+.|| -|...++-..|...||
T Consensus 5 f~vqcp--vcqq~mpaahin~hld 26 (29)
T 3vhs_A 5 FQVQCP--VCQQMMPAAHINSHLD 26 (29)
T ss_dssp CEEECT--TTCCEEEGGGHHHHHH
T ss_pred eeeeCh--HHHHhCcHHHHHHHHh
Confidence 467898 6888888777765554
No 195
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=31.33 E-value=14 Score=15.94 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=12.2
Q ss_pred ccCcccchhhhhcCCCCCC
Q 043988 122 SNCPHCRRLFCVQCKVPWH 140 (151)
Q Consensus 122 ~~C~~C~~~~C~~C~~~~H 140 (151)
+.|+.|++.|=..-.-..|
T Consensus 3 ~~C~~C~k~f~~~~~L~~H 21 (32)
T 2kfq_A 3 FACPACPKRFMRSDALSKH 21 (32)
T ss_dssp SSSSSSCTTHHHHHTTSSS
T ss_pred CCCCCCCcccCCHHHHHHH
Confidence 5688888887655444334
No 196
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=31.23 E-value=21 Score=19.22 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=25.2
Q ss_pred CCeeecccccccCC--CCCceecCCCCCccchHHHHHHH
Q 043988 11 TPSFVCEICVESRS--LYDSFDVKGCSHFNCTSCIVRYI 47 (151)
Q Consensus 11 ~~~~~C~iC~~~~~--~~~~~~~~~C~H~fC~~Cl~~~~ 47 (151)
.....|.||..... ..+++....|.-.|-..|+..-+
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l 42 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHI 42 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcc
Confidence 44568999986532 35666667888888888876544
No 197
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.74 E-value=38 Score=18.02 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVRY 46 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 46 (151)
+.|..|-..+.....+. .=+..||..|....
T Consensus 32 F~C~~C~~~L~~~~~~~--~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTA--RDDFAYCLNCFCDL 62 (70)
T ss_dssp SBCSSSCCBCTTSCCEE--SSSSEECHHHHHHH
T ss_pred CccCCCCCcCCcCceEe--eCCeEECHHHHHHH
Confidence 46777776665433333 34678898887553
No 198
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=30.63 E-value=12 Score=15.49 Aligned_cols=10 Identities=40% Similarity=0.936 Sum_probs=6.1
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1paa_A 3 YACGLCNRAF 12 (30)
T ss_dssp SBCTTTCCBC
T ss_pred cCCcccCccc
Confidence 4566666655
No 199
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=30.27 E-value=14 Score=20.48 Aligned_cols=29 Identities=10% Similarity=0.004 Sum_probs=16.6
Q ss_pred eeecCcccCCccccccccccCcccCcccchhh
Q 043988 100 KFYCPYKDCSSMLIDEGEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~~ 131 (151)
..-|| .|.+.+.... ....+.|+.|+..|
T Consensus 10 iL~CP--~ck~~L~~~~-~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACP--KDKGPLRYLE-SEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCT--TTCCBCEEET-TTTEEEETTTTEEE
T ss_pred HhCCC--CCCCcCeEeC-CCCEEEcCCCCccc
Confidence 45677 7777666543 23445666665543
No 200
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.96 E-value=12 Score=15.18 Aligned_cols=11 Identities=45% Similarity=1.292 Sum_probs=6.5
Q ss_pred ccCcccchhhh
Q 043988 122 SNCPHCRRLFC 132 (151)
Q Consensus 122 ~~C~~C~~~~C 132 (151)
+.|+.|++.|-
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 45666666553
No 201
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=36.07 E-value=11 Score=15.53 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=9.4
Q ss_pred ccCcccchhhhhcC
Q 043988 122 SNCPHCRRLFCVQC 135 (151)
Q Consensus 122 ~~C~~C~~~~C~~C 135 (151)
+.|+.|++.|-..-
T Consensus 4 ~~C~~C~k~f~~~~ 17 (30)
T 2lvr_A 4 YVCIHCQRQFADPG 17 (30)
Confidence 56778888775443
No 202
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.80 E-value=32 Score=16.38 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=13.1
Q ss_pred CcccCCCCCeeecccccccC
Q 043988 4 NAETDDGTPSFVCEICVESR 23 (151)
Q Consensus 4 ~a~~~~~~~~~~C~iC~~~~ 23 (151)
.+........+.|++|-..+
T Consensus 3 ~~~~~~~~k~~~C~~C~k~f 22 (48)
T 2epr_A 3 SGSSGRTRKQVACEICGKIF 22 (48)
T ss_dssp CCSCCCCCCSEEETTTTEEE
T ss_pred CCCCCCCCcCeeCCCCCccc
Confidence 34445566778999886544
No 203
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.79 E-value=12 Score=15.21 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=6.1
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 4566666654
No 204
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=29.74 E-value=20 Score=15.21 Aligned_cols=10 Identities=50% Similarity=1.544 Sum_probs=7.3
Q ss_pred hhhcCCCCCC
Q 043988 131 FCVQCKVPWH 140 (151)
Q Consensus 131 ~C~~C~~~~H 140 (151)
||-.|..+|-
T Consensus 7 fcetcskpwl 16 (26)
T 1loi_A 7 FCETCSKPWL 16 (26)
T ss_dssp HHHTSSCTTG
T ss_pred HHHhcCCchh
Confidence 6777877774
No 205
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=29.65 E-value=15 Score=18.32 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=5.1
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 33 ~~C~~C~~~f 42 (57)
T 3uk3_C 33 YKCEFCEYAA 42 (57)
T ss_dssp EECSSSSCEE
T ss_pred cCCCCCcchh
Confidence 5555555443
No 206
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.54 E-value=23 Score=15.94 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=10.6
Q ss_pred CeeecccccccCCC
Q 043988 12 PSFVCEICVESRSL 25 (151)
Q Consensus 12 ~~~~C~iC~~~~~~ 25 (151)
+.+.|+||....+.
T Consensus 2 ~k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 2 SDFCCPKCQYQAPD 15 (28)
T ss_dssp CCEECTTSSCEESS
T ss_pred CcccCccccccCcC
Confidence 46899999876654
No 207
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=29.37 E-value=19 Score=18.99 Aligned_cols=32 Identities=22% Similarity=0.586 Sum_probs=19.3
Q ss_pred eeecCcccCCcccccc---------ccccCcccCcccchhh
Q 043988 100 KFYCPYKDCSSMLIDE---------GEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~---------~~~~~~~~C~~C~~~~ 131 (151)
.+.|+...|+..+... ......+.|+.|++.|
T Consensus 19 ~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 59 (73)
T 1f2i_G 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59 (73)
T ss_dssp CEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred ccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchh
Confidence 3568744687766544 1223457788887765
No 208
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.36 E-value=1.5 Score=26.46 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=20.9
Q ss_pred CCccchHHHHHHHHHHHhCC--ccccCCCCCCCCCccChhHHh
Q 043988 35 SHFNCTSCIVRYIASKLEGN--ITNISCPQLGCEARLEFEDCR 75 (151)
Q Consensus 35 ~H~fC~~Cl~~~~~~~i~~~--~~~i~CP~~~C~~~~~~~~i~ 75 (151)
.|.-|..|+.......++.+ =.++.||. .|+..+..-+++
T Consensus 13 ~h~HC~~C~~~~C~~~~~~~~~C~~i~CP~-~Cga~i~rckL~ 54 (100)
T 2yre_A 13 QHSHCVNCVSRRCMTRPEPGISCDLIGCPL-VCGAVFHSCKAD 54 (100)
T ss_dssp CCTTGGGCCCTTCCCCCCTTTCCCEEECTT-CCSCEEEHHHHH
T ss_pred cchhHhhhcccccCCCCCCCCeeeeeeCCc-ccCCeeehhhHH
Confidence 46666666555443333222 23567774 576655555543
No 209
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.34 E-value=45 Score=17.71 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=20.1
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYI 47 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~ 47 (151)
+.|..|-..+....++. .=+..||..|..+.+
T Consensus 32 F~C~~C~~~L~~~~f~~--~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVK--NAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSSCCEE--ETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCCccEe--ECCeEECHHHhhhhc
Confidence 56777766665443332 347788988876543
No 210
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.24 E-value=19 Score=20.60 Aligned_cols=29 Identities=24% Similarity=0.550 Sum_probs=18.0
Q ss_pred eecCcccCCcccccc---------ccccCcccCcccchhh
Q 043988 101 FYCPYKDCSSMLIDE---------GEAIRKSNCPHCRRLF 131 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~---------~~~~~~~~C~~C~~~~ 131 (151)
..|+ .|+..|... ......+.|+.|++.|
T Consensus 29 h~C~--~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F 66 (85)
T 2lv2_A 29 HLCP--VCGESFASKGAQERHLRLLHAAQVFPCKYCPATF 66 (85)
T ss_dssp EECT--TSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEE
T ss_pred EECC--CCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEe
Confidence 4577 777766554 1234457787777765
No 211
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.09 E-value=33 Score=16.93 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=28.0
Q ss_pred CCcccCCCCCeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccC
Q 043988 3 SNAETDDGTPSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLE 70 (151)
Q Consensus 3 s~a~~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~ 70 (151)
|++.....+..+.|++|-..+.. ..=|..+++. +..+..++.|+ .|+..+.
T Consensus 2 ~~~~~~~~~k~~~C~~C~k~f~~--------------~~~L~~H~~~-~H~~~k~~~C~--~C~k~F~ 52 (54)
T 2eps_A 2 SSGSSGSVGKPYICQSCGKGFSR--------------PDHLNGHIKQ-VHTSERPHKCQ--VWVSGPS 52 (54)
T ss_dssp CCCCCCCSSCCEECSSSCCEESS--------------HHHHHHHHHH-TSCCCCCCCSS--SSCCSSC
T ss_pred CCCCCCCCCCCeECCCCCcccCC--------------HHHHHHHHHH-hcCCCCCccCC--CCCCCCC
Confidence 34444555677889888544421 1334455431 22344568888 5776654
No 212
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.87 E-value=36 Score=15.86 Aligned_cols=19 Identities=21% Similarity=0.684 Sum_probs=11.9
Q ss_pred cccCCCCCeeecccccccC
Q 043988 5 AETDDGTPSFVCEICVESR 23 (151)
Q Consensus 5 a~~~~~~~~~~C~iC~~~~ 23 (151)
......+..+.|++|-..+
T Consensus 4 ~~~h~~~~~~~C~~C~k~f 22 (46)
T 2ep0_A 4 GSSGTGEKPYKCDVCHKSF 22 (46)
T ss_dssp CCSSTTCCSEECSSSCCEE
T ss_pred CCCCCCCCCeeCcccCccc
Confidence 3344556678888885443
No 213
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=28.70 E-value=11 Score=15.47 Aligned_cols=10 Identities=40% Similarity=1.148 Sum_probs=5.9
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 1rik_A 3 FACPECPKRF 12 (29)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 4566666654
No 214
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=28.30 E-value=17 Score=25.55 Aligned_cols=30 Identities=30% Similarity=0.782 Sum_probs=17.6
Q ss_pred eeecCcccCCcccc--cc-ccccCcccCcccchhh
Q 043988 100 KFYCPYKDCSSMLI--DE-GEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~--~~-~~~~~~~~C~~C~~~~ 131 (151)
..||| .|+..-. .+ +...-.+.|+.|+.+|
T Consensus 34 n~yCP--nCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 34 QSYCP--NCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp HCCCT--TTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred CCcCC--CCCChhhhhccCCCcccccccCCcchhh
Confidence 46899 8887432 22 2234458888887654
No 215
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=28.29 E-value=40 Score=19.89 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=31.5
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCC
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCE 66 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~ 66 (151)
..+.| ||........++....|.-.|-..|+..- ...-.....|| .|.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~----~~~~p~~w~C~--~C~ 74 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGID----RQHIPDTYLCE--RCQ 74 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCC----TTSCCSSBCCT--TTS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCC----ccCCCCCEECC--CCc
Confidence 34568 78776666778888889988888886431 11111247898 676
No 216
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.28 E-value=45 Score=18.89 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=6.7
Q ss_pred CCccchHHHHH
Q 043988 35 SHFNCTSCIVR 45 (151)
Q Consensus 35 ~H~fC~~Cl~~ 45 (151)
+..||..|..+
T Consensus 71 g~~yC~~cy~~ 81 (90)
T 2dar_A 71 GALYCELCYEK 81 (90)
T ss_dssp SCEECHHHHHH
T ss_pred CEEECHHHHHH
Confidence 55667666544
No 217
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=28.14 E-value=13 Score=15.17 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=5.6
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 4566666554
No 218
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=27.86 E-value=18 Score=15.94 Aligned_cols=12 Identities=42% Similarity=1.118 Sum_probs=8.1
Q ss_pred CcccCcccchhh
Q 043988 120 RKSNCPHCRRLF 131 (151)
Q Consensus 120 ~~~~C~~C~~~~ 131 (151)
..+.|+.|++.|
T Consensus 10 k~~~C~~C~k~f 21 (37)
T 1p7a_A 10 KPFQCPDCDRSF 21 (37)
T ss_dssp SSBCCTTTCCCB
T ss_pred CCccCCCCCccc
Confidence 446777777765
No 219
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.76 E-value=39 Score=17.08 Aligned_cols=27 Identities=19% Similarity=0.392 Sum_probs=16.7
Q ss_pred eecCcccCCcccccccc-------ccCcccCcccch
Q 043988 101 FYCPYKDCSSMLIDEGE-------AIRKSNCPHCRR 129 (151)
Q Consensus 101 ~~Cp~~~C~~~~~~~~~-------~~~~~~C~~C~~ 129 (151)
..|+ .|+++.....+ ......||.|+.
T Consensus 5 y~C~--vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 5 YVCN--VCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp EEET--TTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred EECC--CCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 4577 88877664321 233468888875
No 220
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=26.69 E-value=96 Score=23.25 Aligned_cols=56 Identities=21% Similarity=0.491 Sum_probs=37.3
Q ss_pred eeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHh
Q 043988 13 SFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCR 75 (151)
Q Consensus 13 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~ 75 (151)
...||+=+..+ ..+.....|.|.-|.+= ..|+......+ ...|| -|...+..+++.
T Consensus 249 SL~CPlS~~ri--~~PvRg~~C~HlQCFDl-~sfL~~~~~~~--~W~CP--IC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRM--KYPSKSINCKHLQCFDA-LWFLHSQLQIP--TWQCP--VCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBC--SSEEEETTCCSSCCEEH-HHHHHHHHHSC--CCBCT--TTCCBCCGGGEE
T ss_pred eecCCCccccc--cccCcCCcCCCcceECH-HHHHHHhhcCC--ceeCC--CCCcccCHHHee
Confidence 35688776554 45666678999977774 44555544433 46899 598888877753
No 221
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.69 E-value=34 Score=17.84 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=6.9
Q ss_pred CcccCcccchhh
Q 043988 120 RKSNCPHCRRLF 131 (151)
Q Consensus 120 ~~~~C~~C~~~~ 131 (151)
..+.|+.|++.|
T Consensus 36 ~~~~C~~C~~~f 47 (70)
T 1x5w_A 36 RPFKCNYCSFDT 47 (70)
T ss_dssp CSEECSSSSCEE
T ss_pred CCEeCCCCCCcc
Confidence 346666666554
No 222
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.38 E-value=29 Score=18.35 Aligned_cols=30 Identities=17% Similarity=0.476 Sum_probs=17.7
Q ss_pred eeecCcccCCcccccc---------ccccCcccCcccchhh
Q 043988 100 KFYCPYKDCSSMLIDE---------GEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~---------~~~~~~~~C~~C~~~~ 131 (151)
.+.|+ .|+..+... ......+.|+.|++.|
T Consensus 17 ~~~C~--~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f 55 (74)
T 2lce_A 17 PYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55 (74)
T ss_dssp SBCCT--TSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEE
T ss_pred CeECC--CCCceeCCHHHHHHHHHHcCCCCCEECCCCCchh
Confidence 35677 777666543 1223456787777665
No 223
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.15 E-value=13 Score=15.11 Aligned_cols=10 Identities=30% Similarity=0.943 Sum_probs=5.5
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2m0f_A 3 LKCRECGKQF 12 (29)
T ss_dssp EECTTTSCEE
T ss_pred ccCCCCCCcc
Confidence 3566666554
No 224
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=26.11 E-value=24 Score=16.60 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=6.4
Q ss_pred hhcCCCCCCCCCCc
Q 043988 132 CVQCKVPWHSEFDC 145 (151)
Q Consensus 132 C~~C~~~~H~~~~C 145 (151)
|+.|++.-|...+|
T Consensus 3 C~~Cg~~GH~~~~C 16 (37)
T 2bl6_A 3 CYNCGKPGHLSSQC 16 (37)
T ss_dssp BSSSCCSSCCTTTS
T ss_pred ccccCCCCcchhhC
Confidence 44444444444444
No 225
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.07 E-value=13 Score=15.22 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=6.1
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 4 ~~C~~C~~~f 13 (30)
T 2m0d_A 4 YQCDYCGRSF 13 (30)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCccc
Confidence 4566666654
No 226
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.87 E-value=1.7 Score=23.14 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=21.3
Q ss_pred cccCcccCcccchhhhhcCCC-CCCCCCC
Q 043988 117 EAIRKSNCPHCRRLFCVQCKV-PWHSEFD 144 (151)
Q Consensus 117 ~~~~~~~C~~C~~~~C~~C~~-~~H~~~~ 144 (151)
.....+.|..++..+|..|.. ..|.+++
T Consensus 25 ~e~L~lfC~~d~~~iC~~C~~~~eH~~H~ 53 (57)
T 2egm_A 25 QEALKLFCEVDEEAICVVCRESRSHKQHS 53 (57)
T ss_dssp CCBCCEEETTTTEEECHHHHHSHHHHSSC
T ss_pred CceeeEEcCCCCcEEecccCCCCCCCCCc
Confidence 356788999999999999986 4466553
No 227
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.76 E-value=8.8 Score=15.74 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=5.7
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 4566666554
No 228
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=25.67 E-value=28 Score=23.01 Aligned_cols=24 Identities=33% Similarity=1.024 Sum_probs=18.8
Q ss_pred ecCcccCCccccccccccCcccCcccchh
Q 043988 102 YCPYKDCSSMLIDEGEAIRKSNCPHCRRL 130 (151)
Q Consensus 102 ~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~ 130 (151)
.|+ .|+..+...+ ..+.||.|+..
T Consensus 142 ~~~--~~g~~m~~~~---~~~~cp~~g~~ 165 (179)
T 3m7n_A 142 LCS--NCKTEMVREG---DILKCPECGRV 165 (179)
T ss_dssp BCT--TTCCBCEECS---SSEECSSSCCE
T ss_pred ccc--ccCCceEECC---CEEECCCCCCE
Confidence 577 8999887753 78999999764
No 229
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=25.61 E-value=1.1e+02 Score=20.47 Aligned_cols=28 Identities=39% Similarity=0.832 Sum_probs=16.0
Q ss_pred ecCcccCCcccccc-------ccccCcccCcccch
Q 043988 102 YCPYKDCSSMLIDE-------GEAIRKSNCPHCRR 129 (151)
Q Consensus 102 ~Cp~~~C~~~~~~~-------~~~~~~~~C~~C~~ 129 (151)
.||+..|.+.-... +....++.||.|+-
T Consensus 108 ~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~D 142 (182)
T 1qf8_A 108 YCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMD 142 (182)
T ss_dssp BCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCC
T ss_pred CCCccccCCCcccCCccCCCCCCCceEEECCCccc
Confidence 69999986533222 22345666666544
No 230
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=25.46 E-value=29 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=15.8
Q ss_pred ecCcccCCccccccccccCcccCcccchh
Q 043988 102 YCPYKDCSSMLIDEGEAIRKSNCPHCRRL 130 (151)
Q Consensus 102 ~Cp~~~C~~~~~~~~~~~~~~~C~~C~~~ 130 (151)
.|+ +|+..+... .....||.||..
T Consensus 134 ~C~--~Cg~~~~~~---~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 134 VCI--GCGRKFSTL---PPGGVCPDCGSK 157 (165)
T ss_dssp EES--SSCCEESSC---CGGGBCTTTCCB
T ss_pred ECC--CCCCcccCC---CCCCcCCCCCCc
Confidence 588 888777643 233478888764
No 231
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=25.23 E-value=31 Score=18.24 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=18.6
Q ss_pred eecccccccCCCCCceecCCCCCccc-hHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNC-TSCIVR 45 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC-~~Cl~~ 45 (151)
+.|..|-..+....++.. =+..|| .+|...
T Consensus 33 F~C~~C~~~L~~~~f~~~--~g~~yC~~~C~~k 63 (65)
T 2iyb_E 33 FLCSCCSKCLIGQKFMPV--EGMVFCSVECKKR 63 (65)
T ss_dssp SBCTTTCCBCTTSCCEEE--TTEEESSHHHHHT
T ss_pred EECCCCCCcCCCCceEEE--CCEEecCHHHhhh
Confidence 567777666654444433 377788 888654
No 232
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.04 E-value=17 Score=15.64 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=7.6
Q ss_pred CcccCcccchhh
Q 043988 120 RKSNCPHCRRLF 131 (151)
Q Consensus 120 ~~~~C~~C~~~~ 131 (151)
..+.|+.|++.|
T Consensus 6 k~~~C~~C~k~f 17 (35)
T 2elx_A 6 SGYVCALCLKKF 17 (35)
T ss_dssp CSEECSSSCCEE
T ss_pred CCeECCCCcchh
Confidence 346777777655
No 233
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=24.79 E-value=35 Score=19.86 Aligned_cols=16 Identities=19% Similarity=0.634 Sum_probs=11.8
Q ss_pred CCCCCeeecccccccC
Q 043988 8 DDGTPSFVCEICVESR 23 (151)
Q Consensus 8 ~~~~~~~~C~iC~~~~ 23 (151)
......+.|+||.-++
T Consensus 40 n~~A~~i~C~VCr~tF 55 (86)
T 1wvk_A 40 NKKAMSIQCKVCMQTF 55 (86)
T ss_dssp CCTTCCEEETTTTEEE
T ss_pred HHHhhCCCChHhHhhH
Confidence 3445678999998755
No 234
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.70 E-value=75 Score=17.28 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=19.5
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVRY 46 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 46 (151)
+.|..|-..+.....+. .=+..||..|..+.
T Consensus 42 F~C~~C~~~L~~~~~~~--~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFE--LDGRPFCELHYHHR 72 (80)
T ss_dssp CBCSSSCCBSCSSCCEE--SSSCEECHHHHHHH
T ss_pred CChhhCCCCCCCCcEEe--ECCEEECHHHHHHH
Confidence 56777766665444433 34678888887554
No 235
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.33 E-value=44 Score=17.80 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=18.7
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVR 45 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 45 (151)
+.|..|-..+.....+. .=+..||..|...
T Consensus 34 F~C~~C~~~L~~~~~~~--~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVP--DKGAHYCVPCYEN 63 (72)
T ss_dssp CBCTTTCCBTTTSCEEE--ETTEEEEHHHHHH
T ss_pred CeECCCCCcCCCCccCC--cCCeEECHHHHHH
Confidence 56777776665444333 2467788888754
No 236
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.14 E-value=83 Score=17.15 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=19.4
Q ss_pred CCeeecccccccCCCCCceecCCCCCccchH
Q 043988 11 TPSFVCEICVESRSLYDSFDVKGCSHFNCTS 41 (151)
Q Consensus 11 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~ 41 (151)
....-|..|-...... .+.. .|+..||..
T Consensus 13 ~~~~rC~~C~kkvgl~-~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLT-GFMC-RCGTTFCGS 41 (64)
T ss_dssp SSCCCCTTTCCCCCTT-CEEC-SSSCEECTT
T ss_pred CcCCcChhhCCccCcc-CEEe-ecCCEeccc
Confidence 3456799997654433 3555 699999964
No 237
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=24.03 E-value=27 Score=19.14 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=16.5
Q ss_pred cccCCCCCCCCCccChhHHhhcC
Q 043988 56 TNISCPQLGCEARLEFEDCRLIL 78 (151)
Q Consensus 56 ~~i~CP~~~C~~~~~~~~i~~~l 78 (151)
..+.||. +|+..+...++...+
T Consensus 15 ~~v~C~~-~C~~~v~r~~l~~H~ 36 (76)
T 2yuc_A 15 NVIPCPN-RCPMKLSRRDLPAHL 36 (76)
T ss_dssp SCCBCTT-CCSCBCCSSSSTTTT
T ss_pred cccCCCc-cccHHhhHhHHHhhC
Confidence 3688986 899888877776554
No 238
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=24.01 E-value=80 Score=21.27 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=15.7
Q ss_pred eeecCcccCCccccccccccCcccCcccch
Q 043988 100 KFYCPYKDCSSMLIDEGEAIRKSNCPHCRR 129 (151)
Q Consensus 100 ~~~Cp~~~C~~~~~~~~~~~~~~~C~~C~~ 129 (151)
...|+ .|+++... ..+ -.||.|+.
T Consensus 171 ~~~C~--~CG~i~~g---~~p-~~CP~C~~ 194 (202)
T 1yuz_A 171 FHLCP--ICGYIHKG---EDF-EKCPICFR 194 (202)
T ss_dssp EEECS--SSCCEEES---SCC-SBCTTTCC
T ss_pred EEEEC--CCCCEEcC---cCC-CCCCCCCC
Confidence 34699 89988653 122 57887765
No 239
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=23.68 E-value=18 Score=15.73 Aligned_cols=10 Identities=40% Similarity=1.148 Sum_probs=5.9
Q ss_pred ccCcccchhh
Q 043988 122 SNCPHCRRLF 131 (151)
Q Consensus 122 ~~C~~C~~~~ 131 (151)
+.|+.|++.|
T Consensus 3 ~~C~~C~k~F 12 (33)
T 1rim_A 3 FACPECPKRF 12 (33)
T ss_dssp CCCSSSCCCC
T ss_pred ccCCCCCchh
Confidence 4566666654
No 240
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.64 E-value=20 Score=19.89 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=19.5
Q ss_pred CCCCeeecccccccCCCCC--ceecCCCCCccchH
Q 043988 9 DGTPSFVCEICVESRSLYD--SFDVKGCSHFNCTS 41 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~~~~~--~~~~~~C~H~fC~~ 41 (151)
......-|..|-....... .+.. .|+..||..
T Consensus 11 ~~~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 11 KQKSRRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp SCSCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred CCccCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 3444567999876553321 1444 789999863
No 241
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=23.49 E-value=1.1e+02 Score=18.08 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=9.4
Q ss_pred ccCCCCCCCCCccCh
Q 043988 57 NISCPQLGCEARLEF 71 (151)
Q Consensus 57 ~i~CP~~~C~~~~~~ 71 (151)
.+.|| .|+..+..
T Consensus 8 ILaCP--~cK~pL~l 20 (97)
T 2k5r_A 8 LLCSP--DTRQPLSL 20 (97)
T ss_dssp SCCCC--TTSSCCEE
T ss_pred heECC--CCCCcccc
Confidence 47899 68876654
No 242
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=23.46 E-value=45 Score=19.92 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=25.1
Q ss_pred CeeecccccccCCCCCceecCCCCCccchHHHHHH
Q 043988 12 PSFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRY 46 (151)
Q Consensus 12 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 46 (151)
....|.||.+.-...+++.-..|+..|-..|+..-
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~ 40 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIA 40 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCc
Confidence 34579999876544556666789988888887643
No 243
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=23.41 E-value=17 Score=17.82 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=15.4
Q ss_pred cccCCCCCCCCCccChhHHhhcCC
Q 043988 56 TNISCPQLGCEARLEFEDCRLILP 79 (151)
Q Consensus 56 ~~i~CP~~~C~~~~~~~~i~~~l~ 79 (151)
....|| .|+..|+..++...+|
T Consensus 8 ~~~~C~--~C~~~i~~~~~~EH~D 29 (39)
T 2i5o_A 8 DQVPCE--KCGSLVPVWDMPEHMD 29 (39)
T ss_dssp CEEECT--TTCCEEEGGGHHHHHH
T ss_pred CCcccc--cccCcCCcccccchhh
Confidence 356899 7998888766555444
No 244
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=23.34 E-value=19 Score=23.77 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=17.7
Q ss_pred eeecCcccC-Ccc----c---cccccccCcccCcccchhh
Q 043988 100 KFYCPYKDC-SSM----L---IDEGEAIRKSNCPHCRRLF 131 (151)
Q Consensus 100 ~~~Cp~~~C-~~~----~---~~~~~~~~~~~C~~C~~~~ 131 (151)
.+.||+|+| .+. + ...+.....+.|..|.+.+
T Consensus 114 vl~C~Np~CITn~~~Epvs~F~v~~~~~~~lrC~YCe~~~ 153 (168)
T 1pg5_B 114 ILKCPNPYCITSNDVEAIPTFKTLTEKPLKMRCEYCETII 153 (168)
T ss_dssp SSCCSCTTBGGGTCTTSCCEEEEEETTTTEEEETTTCCEE
T ss_pred eEEcCCCCcccCCCCccccEEEEEcCCCCEEEeeCCCCEe
Confidence 356999999 322 1 1112224457777776543
No 245
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.87 E-value=55 Score=17.46 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=18.1
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVR 45 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 45 (151)
+.|..|-..+....++. .=+..||..|..+
T Consensus 36 F~C~~C~~~L~~~~f~~--~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLT--ERDDILCPDCGKD 65 (72)
T ss_dssp CBCSSSCCBCTTSCCEE--CSSSEECHHHHHT
T ss_pred CEeccCCCcCCCCccEe--ECCEEEChhHcCc
Confidence 56777766665433332 3467788888643
No 246
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.68 E-value=44 Score=18.87 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=6.7
Q ss_pred eeecccccccCC
Q 043988 13 SFVCEICVESRS 24 (151)
Q Consensus 13 ~~~C~iC~~~~~ 24 (151)
...|..|-..+.
T Consensus 25 ~~~C~~C~~~I~ 36 (89)
T 1x64_A 25 MPLCDKCGSGIV 36 (89)
T ss_dssp CCBCTTTCCBCC
T ss_pred CCCcccCCCEec
Confidence 345666665544
No 247
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.41 E-value=42 Score=17.85 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=7.0
Q ss_pred CcccCcccchhh
Q 043988 120 RKSNCPHCRRLF 131 (151)
Q Consensus 120 ~~~~C~~C~~~~ 131 (151)
..+.|+.|++.|
T Consensus 45 ~~~~C~~C~~~f 56 (77)
T 2cot_A 45 KPYKCDECGKAF 56 (77)
T ss_dssp CSEECSSSCCEE
T ss_pred cCeeCCCCCCcc
Confidence 346666666554
No 248
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=22.34 E-value=43 Score=17.70 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=22.8
Q ss_pred eeecccccccCCCCCceecCCCCCccc-hHHHHHH
Q 043988 13 SFVCEICVESRSLYDSFDVKGCSHFNC-TSCIVRY 46 (151)
Q Consensus 13 ~~~C~iC~~~~~~~~~~~~~~C~H~fC-~~Cl~~~ 46 (151)
.=.|+-|.-..+..+.+.. =|..|| ..|+..+
T Consensus 7 kCaC~~C~c~Vs~~eai~~--dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 7 KCACEPCLCNVDPSKAIDR--NGLYYCSEACADGH 39 (55)
T ss_dssp CCSSTTCCCCBCTTTSEES--SSCEESSHHHHHTS
T ss_pred eecCCCCeeEechHHhhhc--CCeEEehHHHHccC
Confidence 3468888777777776654 488898 7776654
No 249
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.24 E-value=63 Score=17.56 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=6.1
Q ss_pred ccCCCCCCCCCcc
Q 043988 57 NISCPQLGCEARL 69 (151)
Q Consensus 57 ~i~CP~~~C~~~~ 69 (151)
.|.|| .|+..|
T Consensus 38 ~iRC~--~CG~RI 48 (63)
T 3h0g_L 38 VIRCR--ECGHRV 48 (63)
T ss_dssp CCCCS--SSCCCC
T ss_pred ceECC--CCCcEE
Confidence 56777 455433
No 250
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=22.10 E-value=19 Score=18.92 Aligned_cols=8 Identities=38% Similarity=1.310 Sum_probs=5.9
Q ss_pred eecCcccCCc
Q 043988 101 FYCPYKDCSS 110 (151)
Q Consensus 101 ~~Cp~~~C~~ 110 (151)
+.|| .|+.
T Consensus 16 ~~Cp--~Cg~ 23 (57)
T 1qyp_A 16 ITCP--KCGN 23 (57)
T ss_dssp CCCT--TTCC
T ss_pred eECC--CCCC
Confidence 4688 7875
No 251
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.04 E-value=49 Score=14.13 Aligned_cols=15 Identities=13% Similarity=0.463 Sum_probs=9.6
Q ss_pred CCCCeeecccccccC
Q 043988 9 DGTPSFVCEICVESR 23 (151)
Q Consensus 9 ~~~~~~~C~iC~~~~ 23 (151)
..+..+.|++|-..+
T Consensus 5 ~~~k~~~C~~C~k~f 19 (36)
T 2elt_A 5 SSGKPYKCPQCSYAS 19 (36)
T ss_dssp CCCCSEECSSSSCEE
T ss_pred CCCCCCCCCCCCccc
Confidence 345578888885444
No 252
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=21.93 E-value=65 Score=19.55 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=19.2
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIAS 49 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~ 49 (151)
+.|..|-..+...+.+... =+..||..|..+.+..
T Consensus 95 F~C~~C~~~L~~g~~f~~~-~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 95 FKCAACQKHFCVGDRYLLI-NSDIVCEQDIYEWTKI 129 (131)
T ss_dssp CBCTTTCCBCCTTCEEEEE-TTEEEEGGGHHHHHHH
T ss_pred cccCCCCCCCCCCCEEEEE-CCEEEcHHHHHHHhhc
Confidence 4566666555322322221 3677888887665543
No 253
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.92 E-value=22 Score=15.68 Aligned_cols=12 Identities=42% Similarity=0.988 Sum_probs=7.8
Q ss_pred CcccCcccchhh
Q 043988 120 RKSNCPHCRRLF 131 (151)
Q Consensus 120 ~~~~C~~C~~~~ 131 (151)
..+.|+.|++.|
T Consensus 8 k~~~C~~C~k~f 19 (37)
T 2elp_A 8 RAMKCPYCDFYF 19 (37)
T ss_dssp CCEECSSSSCEE
T ss_pred CCeECCCCChhh
Confidence 346777777655
No 254
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.87 E-value=46 Score=17.74 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=19.1
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVRY 46 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 46 (151)
+.|..|-..+.....+.. =+..||..|....
T Consensus 34 F~C~~C~~~L~~~~~~~~--~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPK--DNQNFCVPCYEKQ 64 (72)
T ss_dssp TCCSSSCCCCCSSSEEEE--TTEEEEHHHHHHH
T ss_pred CcccccCCccCCCccCcc--CCeEECHHHHhHH
Confidence 467777666654433332 3677888887543
No 255
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=21.42 E-value=37 Score=17.35 Aligned_cols=13 Identities=31% Similarity=0.909 Sum_probs=7.7
Q ss_pred cCcccCcccchhh
Q 043988 119 IRKSNCPHCRRLF 131 (151)
Q Consensus 119 ~~~~~C~~C~~~~ 131 (151)
...+.|+.|++.|
T Consensus 38 ~~~~~C~~C~k~f 50 (66)
T 2drp_A 38 VKVYPCPFCFKEF 50 (66)
T ss_dssp CCCEECTTTCCEE
T ss_pred CcCeECCCCCCcc
Confidence 3446677666654
No 256
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.39 E-value=68 Score=17.45 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=19.1
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVRY 46 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 46 (151)
+.|..|-..+.....+. .=+..||..|..+.
T Consensus 42 F~C~~C~~~L~~~~~~~--~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTS--RDEDPYCVACFGEL 72 (80)
T ss_dssp CBCSSSCCBCTTCCEEE--CSSSEEEHHHHHHH
T ss_pred CCcccCCCcCCCCeeEe--ECCEEECHHHHHHH
Confidence 56777766665433333 34678888887543
No 257
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=21.38 E-value=62 Score=14.96 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=10.0
Q ss_pred CCCCCeeecccccccC
Q 043988 8 DDGTPSFVCEICVESR 23 (151)
Q Consensus 8 ~~~~~~~~C~iC~~~~ 23 (151)
...+..+.|++|-..+
T Consensus 7 h~~~k~~~C~~C~k~f 22 (46)
T 2el6_A 7 GAGVNPYKCSQCEKSF 22 (46)
T ss_dssp SCCCCSEECSSSSCEE
T ss_pred CCCCCCeECCCCCccc
Confidence 3445678888885443
No 258
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.17 E-value=40 Score=18.29 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=18.2
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIVR 45 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 45 (151)
+.|..|-..+...+.+.. .=+..||..|...
T Consensus 32 F~C~~C~~~L~~~~~f~~-~~~~~yC~~C~~~ 62 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEMYL-QGSSIWHPACRQA 62 (73)
T ss_dssp SCCSSSCCCCCSSCCCEE-ETTEEECTTHHHH
T ss_pred CEeCCCCCCCCCCCeeEe-eCCEEEChHHChH
Confidence 567777766652232332 2467788888654
No 259
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.17 E-value=21 Score=15.94 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=7.9
Q ss_pred CcccCcccchhh
Q 043988 120 RKSNCPHCRRLF 131 (151)
Q Consensus 120 ~~~~C~~C~~~~ 131 (151)
..+.|+.|++.|
T Consensus 8 k~~~C~~C~k~f 19 (37)
T 2elm_A 8 HLYYCSQCHYSS 19 (37)
T ss_dssp CEEECSSSSCEE
T ss_pred cCeECCCCCccc
Confidence 346777777765
No 260
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.01 E-value=20 Score=26.89 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=0.0
Q ss_pred eeecccccccCCCC-CceecCCCCCccchHHHHHHHH
Q 043988 13 SFVCEICVESRSLY-DSFDVKGCSHFNCTSCIVRYIA 48 (151)
Q Consensus 13 ~~~C~iC~~~~~~~-~~~~~~~C~H~fC~~Cl~~~~~ 48 (151)
...|.+|...+... .-...-.||+.||..|....+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~ 411 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYP 411 (434)
T ss_dssp -------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeee
Confidence 34799998776532 1233457999999999876543
No 261
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.93 E-value=29 Score=15.74 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=9.2
Q ss_pred cCcccCcccchhhh
Q 043988 119 IRKSNCPHCRRLFC 132 (151)
Q Consensus 119 ~~~~~C~~C~~~~C 132 (151)
...+.|+.|++.|=
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2ytb_A 9 EKPYRCDQCGKAFS 22 (42)
T ss_dssp CCSBCCTTTTCCBS
T ss_pred CCCeeCCCccchhC
Confidence 34467888877664
No 262
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.90 E-value=67 Score=17.35 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=15.5
Q ss_pred eecccccccCCCCCceecCCCCCccchHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCTSCIV 44 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~ 44 (151)
+.|..|-..+....++. .=+..||..|..
T Consensus 47 F~C~~C~~~L~~~~f~~--~~~~~yC~~cy~ 75 (77)
T 2egq_A 47 FHCKKCSVNLANKRFVF--HQEQVYCPDCAK 75 (77)
T ss_dssp CBCSSSCCBCTTSCCCE--ETTEECCHHHHH
T ss_pred CEehhcCCCCCCCccEe--ECCEEEChHHhc
Confidence 45666665554333322 235667777754
No 263
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.85 E-value=61 Score=14.98 Aligned_cols=16 Identities=19% Similarity=0.740 Sum_probs=10.4
Q ss_pred CCCCCeeecccccccC
Q 043988 8 DDGTPSFVCEICVESR 23 (151)
Q Consensus 8 ~~~~~~~~C~iC~~~~ 23 (151)
...+..+.|++|-..+
T Consensus 7 h~~~k~~~C~~C~k~F 22 (46)
T 2enh_A 7 GTGEKPYECDVCRKAF 22 (46)
T ss_dssp CCCSSSCBCTTTCCBC
T ss_pred cCCCCCcCCCCcCchh
Confidence 3445678888886544
No 264
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.58 E-value=56 Score=13.99 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=9.4
Q ss_pred CCCeeecccccccC
Q 043988 10 GTPSFVCEICVESR 23 (151)
Q Consensus 10 ~~~~~~C~iC~~~~ 23 (151)
.+..+.|++|-..+
T Consensus 6 ~~k~~~C~~C~k~f 19 (36)
T 2els_A 6 SGKIFTCEYCNKVF 19 (36)
T ss_dssp CCCCEECTTTCCEE
T ss_pred CCCCEECCCCCcee
Confidence 45678888885444
No 265
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.49 E-value=1.2e+02 Score=16.54 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=30.8
Q ss_pred CCCeeecccccccCCCC-------------CceecCCCCCccch-HHHHHHHHHHHhCCccccCCCCCCCCCccCh
Q 043988 10 GTPSFVCEICVESRSLY-------------DSFDVKGCSHFNCT-SCIVRYIASKLEGNITNISCPQLGCEARLEF 71 (151)
Q Consensus 10 ~~~~~~C~iC~~~~~~~-------------~~~~~~~C~H~fC~-~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~ 71 (151)
.+..+.|++|-..+... ..+....|+-.|=. .=|..++.....+...++.|+ .|+..+..
T Consensus 4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~--~C~~~f~~ 77 (95)
T 2yt9_A 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ--SCGKGFSR 77 (95)
T ss_dssp CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCS--SSCCCBSS
T ss_pred CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECC--CccchhCC
Confidence 34578899987655421 22333345544433 224455543322212467887 57766543
No 266
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.43 E-value=50 Score=17.90 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=16.4
Q ss_pred eecccccccCCCCCceecCCCCCccch-HHHHH
Q 043988 14 FVCEICVESRSLYDSFDVKGCSHFNCT-SCIVR 45 (151)
Q Consensus 14 ~~C~iC~~~~~~~~~~~~~~C~H~fC~-~Cl~~ 45 (151)
+.|..|-..+.....+.. =+..||. .|..+
T Consensus 37 F~C~~C~~~L~~~~~~~~--~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEH--DGKPFCHKPCYAT 67 (76)
T ss_dssp CBCSSSCCBCCTTSCEEE--TTEEECTTTHHHH
T ss_pred CCCCCCCCccCCCceEeE--CCEEecchHHHHH
Confidence 456666655544333332 3666777 57654
No 267
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.43 E-value=40 Score=17.97 Aligned_cols=12 Identities=42% Similarity=1.107 Sum_probs=7.4
Q ss_pred CcccCcccchhh
Q 043988 120 RKSNCPHCRRLF 131 (151)
Q Consensus 120 ~~~~C~~C~~~~ 131 (151)
..+.|+.|++.|
T Consensus 44 ~~~~C~~C~~~f 55 (77)
T 2ct1_A 44 AKFHCPHCDTVI 55 (77)
T ss_dssp SSEECSSSSCEE
T ss_pred CccCCCCCCCcc
Confidence 446677776654
No 268
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.27 E-value=17 Score=21.11 Aligned_cols=36 Identities=11% Similarity=0.384 Sum_probs=24.0
Q ss_pred eeecccccccCC--CCCceecCCCCCccchHHHHHHHH
Q 043988 13 SFVCEICVESRS--LYDSFDVKGCSHFNCTSCIVRYIA 48 (151)
Q Consensus 13 ~~~C~iC~~~~~--~~~~~~~~~C~H~fC~~Cl~~~~~ 48 (151)
...|.||..... ..+++....|...|-..|+..-+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~ 53 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVT 53 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCccc
Confidence 457999986533 245666667887777777665443
No 269
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=20.18 E-value=1.1e+02 Score=22.90 Aligned_cols=56 Identities=18% Similarity=0.421 Sum_probs=37.0
Q ss_pred eeecccccccCCCCCceecCCCCCccchHHHHHHHHHHHhCCccccCCCCCCCCCccChhHHh
Q 043988 13 SFVCEICVESRSLYDSFDVKGCSHFNCTSCIVRYIASKLEGNITNISCPQLGCEARLEFEDCR 75 (151)
Q Consensus 13 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~~~~~~i~ 75 (151)
...||+=+..+ ..+.....|.|.-|.+ +..|+...-..+ .-.|| -|...+..+++.
T Consensus 215 SL~CPlS~~ri--~~P~Rg~~C~HlqCFD-l~sfL~~~~~~~--~W~CP--iC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRL--TIPCRAVTCTHLQCFD-AALYLQMNEKKP--TWICP--VCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBC--SSEEEETTCCCCCCEE-HHHHHHHHHHSC--CCBCT--TTCSBCCGGGEE
T ss_pred eeeCCCcccee--ccCCcCCCCCCCccCC-HHHHHHHHhhCC--CeECC--CCCcccCHHHeE
Confidence 34688776544 4455666899997776 445555554444 45899 599888877653
No 270
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=20.11 E-value=62 Score=23.73 Aligned_cols=30 Identities=17% Similarity=0.551 Sum_probs=17.8
Q ss_pred CCeeecCcccCCcc---ccccccccCcccCcccchh
Q 043988 98 HKKFYCPYKDCSSM---LIDEGEAIRKSNCPHCRRL 130 (151)
Q Consensus 98 ~~~~~Cp~~~C~~~---~~~~~~~~~~~~C~~C~~~ 130 (151)
+....|| .|+.. ++.+ .....+.|..||..
T Consensus 19 ~~~~~Cp--~Cg~~~~~iv~D-~~~G~~vC~~CG~V 51 (345)
T 3k7a_M 19 NIVLTCP--ECKVYPPKIVER-FSEGDVVCALCGLV 51 (345)
T ss_dssp CCCCCCS--TTCCSCCCCCCC-SSSCSCCCSSSCCC
T ss_pred cCCCcCc--CCCCCCCceEEE-CCCCCEecCCCCeE
Confidence 3456899 78763 3333 23445677777764
No 271
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.06 E-value=33 Score=15.59 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=9.1
Q ss_pred cCcccCcccchhhh
Q 043988 119 IRKSNCPHCRRLFC 132 (151)
Q Consensus 119 ~~~~~C~~C~~~~C 132 (151)
...+.|+.|++.|=
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2eos_A 9 EKPYPCEICGTRFR 22 (42)
T ss_dssp SCCBCCSSSCCCBS
T ss_pred CCCEECCCCCCccC
Confidence 34467887877664
Done!