Your job contains 1 sequence.
>043990
MEDDEEILSDSDPSDSSDGYTIDREDADYNDDNDDGDDEASAADSAPSDEDRKSKNVDAL
VRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLARRLCARKRFVPWGS
SRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLL
VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGK
PMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVL
IVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGD
AAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKII
EVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKS
GNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIV
LVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGG
CGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMS
KEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAES
IGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYS
MSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSPKMQATEGNKNPNNHITNPKPKLD
QRSKLLSQHHKLLKDVPSLENSAKFSLSASSQPKSMRTSLKGAIKPKLSFGNQLPLKRFS
PDNVEHDDDFE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043990
(911 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094083 - symbol:RAD54 "homolog of RAD54" spec... 3168 0. 1
UNIPROTKB|F1S3V8 - symbol:RAD54L "Uncharacterized protein... 1325 2.7e-139 2
UNIPROTKB|A1L4Z4 - symbol:RAD54L "Uncharacterized protein... 1321 7.2e-139 2
UNIPROTKB|Q92698 - symbol:RAD54L "DNA repair and recombin... 1320 1.9e-138 2
UNIPROTKB|F1PJC9 - symbol:RAD54L "Uncharacterized protein... 1312 4.0e-138 2
MGI|MGI:894697 - symbol:Rad54l "RAD54 like (S. cerevisiae... 1309 2.8e-137 2
UNIPROTKB|B4KHL5 - symbol:okr "DNA repair and recombinati... 1291 6.6e-136 2
UNIPROTKB|B3MMA5 - symbol:okr "DNA repair and recombinati... 1272 2.8e-135 2
ZFIN|ZDB-GENE-040426-968 - symbol:rad54l "RAD54-like (S. ... 1280 5.9e-135 2
WB|WBGene00004298 - symbol:rad-54 species:6239 "Caenorhab... 1279 3.2e-134 2
UNIPROTKB|B4M9A8 - symbol:okr "DNA repair and recombinati... 1272 2.9e-133 2
UNIPROTKB|F1NBD4 - symbol:RAD54L "DNA repair and recombin... 1304 4.8e-133 1
UNIPROTKB|F1NX31 - symbol:RAD54L "DNA repair and recombin... 1304 4.8e-133 1
UNIPROTKB|B4NXB8 - symbol:okr "DNA repair and recombinati... 1278 6.0e-133 2
UNIPROTKB|B4MX21 - symbol:okr "DNA repair and recombinati... 1262 7.6e-133 2
FB|FBgn0002989 - symbol:okr "okra" species:7227 "Drosophi... 1270 2.0e-132 2
UNIPROTKB|O12944 - symbol:RAD54L "DNA repair and recombin... 1297 2.7e-132 1
UNIPROTKB|B3NAN8 - symbol:okr "DNA repair and recombinati... 1270 3.3e-132 2
UNIPROTKB|B4GS98 - symbol:okr "DNA repair and recombinati... 1258 1.1e-131 2
UNIPROTKB|Q29KH2 - symbol:okr "DNA repair and recombinati... 1257 2.9e-131 2
UNIPROTKB|B4JCS7 - symbol:okr "DNA repair and recombinati... 1252 4.8e-131 2
DICTYBASE|DDB_G0282997 - symbol:rad54 "CHR group protein"... 1186 9.1e-126 2
ASPGD|ASPL0000027956 - symbol:AN10677 species:162425 "Eme... 1212 3.1e-125 2
CGD|CAL0001568 - symbol:RAD54 species:5476 "Candida albic... 1206 3.1e-125 2
UNIPROTKB|Q5AKX3 - symbol:RAD54 "Putative uncharacterized... 1206 3.1e-125 2
POMBASE|SPAC15A10.03c - symbol:rad54 "DNA-dependent ATPas... 1217 8.0e-124 1
SGD|S000003131 - symbol:RAD54 "DNA-dependent ATPase that ... 1050 1.7e-119 3
UNIPROTKB|F1PW14 - symbol:RAD54B "Uncharacterized protein... 1110 1.8e-112 1
UNIPROTKB|F1MSA4 - symbol:RAD54B "Uncharacterized protein... 1102 1.2e-111 1
ZFIN|ZDB-GENE-060810-50 - symbol:rad54b "RAD54 homolog B ... 1101 1.6e-111 1
UNIPROTKB|Q9Y620 - symbol:RAD54B "DNA repair and recombin... 1093 1.1e-110 1
UNIPROTKB|F1RY50 - symbol:RAD54B "Uncharacterized protein... 1086 6.1e-110 1
UNIPROTKB|Q9DG67 - symbol:RAD54B "DNA repair and recombin... 1055 1.2e-106 1
UNIPROTKB|F1P5M3 - symbol:RAD54B "DNA repair and recombin... 1044 1.7e-105 1
ASPGD|ASPL0000055935 - symbol:AN0855 species:162425 "Emer... 1000 7.9e-101 1
GENEDB_PFALCIPARUM|PF08_0126 - symbol:PF08_0126 "DNA repa... 575 5.6e-97 2
UNIPROTKB|Q8IAN4 - symbol:PF08_0126 "DNA repair protein r... 575 5.6e-97 2
CGD|CAL0004359 - symbol:RDH54 species:5476 "Candida albic... 411 1.2e-79 3
SGD|S000000277 - symbol:RDH54 "DNA-dependent ATPase" spec... 434 1.6e-73 4
WB|WBGene00013792 - symbol:Y116A8C.13 species:6239 "Caeno... 480 8.4e-72 2
DICTYBASE|DDB_G0285117 - symbol:rad54b "CHR group protein... 696 1.8e-68 1
POMBASE|SPAC22F3.03c - symbol:rdh54 "ATP-dependent DNA he... 382 2.9e-65 2
ZFIN|ZDB-GENE-060531-56 - symbol:ercc6l "excision repair ... 418 1.0e-55 2
UNIPROTKB|I3LFY4 - symbol:ERCC6L "Uncharacterized protein... 417 2.8e-54 2
UNIPROTKB|F1SDX0 - symbol:ERCC6 "Uncharacterized protein"... 398 1.0e-53 3
UNIPROTKB|Q5T890 - symbol:RAD26L "Putative DNA repair and... 358 6.2e-53 3
UNIPROTKB|E2QSK6 - symbol:ERCC6L "Uncharacterized protein... 391 6.3e-53 4
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 358 7.8e-53 2
UNIPROTKB|Q03468 - symbol:ERCC6 "DNA excision repair prot... 392 2.7e-52 3
MGI|MGI:1923501 - symbol:Ercc6l2 "excision repair cross-c... 365 4.7e-52 3
UNIPROTKB|F1NYG8 - symbol:F1NYG8 "Uncharacterized protein... 361 4.8e-52 3
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 372 5.0e-52 2
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 372 5.0e-52 2
TAIR|locus:2054011 - symbol:CHR8 "chromatin remodeling 8"... 398 2.4e-51 4
DICTYBASE|DDB_G0281441 - symbol:ercc6 "DNA excision repai... 391 7.0e-51 4
UNIPROTKB|E1BYA8 - symbol:ERCC6 "Uncharacterized protein"... 384 8.1e-51 5
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 557 1.6e-50 2
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 557 1.6e-50 2
UNIPROTKB|E2RGN3 - symbol:ERCC6L2 "Uncharacterized protei... 356 9.6e-50 4
POMBASE|SPCP25A2.02c - symbol:rhp26 "SNF2 family helicase... 370 1.5e-49 3
UNIPROTKB|F1PQX1 - symbol:ERCC6L2 "Uncharacterized protei... 356 1.7e-49 4
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 323 1.9e-48 2
ASPGD|ASPL0000068126 - symbol:cshA species:162425 "Emeric... 347 6.3e-48 4
CGD|CAL0000882 - symbol:orf19.607 species:5476 "Candida a... 357 1.2e-47 4
SGD|S000003796 - symbol:RAD26 "Protein involved in transc... 348 1.4e-47 4
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 378 1.4e-47 4
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 326 2.6e-47 2
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 326 2.7e-47 2
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 328 3.3e-47 2
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 328 3.3e-47 2
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 328 3.3e-47 2
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 325 4.3e-47 2
RGD|1310600 - symbol:Rad54l "RAD54 like (S. cerevisiae)" ... 304 5.0e-47 4
RGD|1561889 - symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae... 304 5.0e-47 4
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 326 5.5e-47 2
UNIPROTKB|O60264 - symbol:SMARCA5 "SWI/SNF-related matrix... 326 5.5e-47 2
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 319 8.0e-47 2
UNIPROTKB|F5H493 - symbol:ERCC6 "DNA excision repair prot... 392 1.1e-46 2
UNIPROTKB|H0Y760 - symbol:RAD54L2 "Helicase ARIP4" specie... 304 1.6e-46 5
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 319 2.6e-46 2
MGI|MGI:1933196 - symbol:Rad54l2 "RAD54 like 2 (S. cerevi... 300 3.2e-46 5
POMBASE|SPAC1250.01 - symbol:snf21 "ATP-dependent DNA hel... 516 3.5e-46 1
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 328 3.5e-46 2
UNIPROTKB|Q9Y4B4 - symbol:RAD54L2 "Helicase ARIP4" specie... 304 3.7e-46 5
ZFIN|ZDB-GENE-030912-11 - symbol:atrx "alpha thalassemia/... 296 5.7e-46 4
UNIPROTKB|Q2NKX8 - symbol:ERCC6L "DNA excision repair pro... 406 7.2e-46 2
UNIPROTKB|F1PB65 - symbol:RAD54L2 "Uncharacterized protei... 300 7.2e-46 4
TAIR|locus:2160811 - symbol:CHR24 "chromatin remodeling 2... 433 7.6e-46 2
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 316 1.2e-45 2
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 300 1.2e-45 3
UNIPROTKB|J9P3F5 - symbol:ERCC6L "Uncharacterized protein... 400 1.3e-45 2
RGD|1565734 - symbol:Ercc6l "excision repair cross-comple... 404 1.4e-45 3
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 324 1.6e-45 2
UNIPROTKB|A6QQR4 - symbol:ERCC6L "DNA excision repair pro... 403 1.8e-45 3
MGI|MGI:2654144 - symbol:Ercc6l "excision repair cross-co... 396 2.1e-45 2
UNIPROTKB|E1BEK4 - symbol:Bt.109773 "Uncharacterized prot... 300 3.9e-45 4
UNIPROTKB|F1RPI9 - symbol:LOC100514440 "Uncharacterized p... 299 5.1e-45 4
UNIPROTKB|E1BS47 - symbol:CHD7 "Chromodomain-helicase-DNA... 501 2.0e-44 1
MGI|MGI:2444748 - symbol:Chd7 "chromodomain helicase DNA ... 506 2.0e-44 1
ZFIN|ZDB-GENE-030131-3097 - symbol:rad54l2 "RAD54-like 2 ... 307 2.1e-44 5
WARNING: Descriptions of 460 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2094083 [details] [associations]
symbol:RAD54 "homolog of RAD54" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0010332 "response to gamma
radiation" evidence=IEP;RCA] [GO:0006302 "double-strand break
repair" evidence=RCA] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0007140 "male meiosis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0010332 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0045003
HOGENOM:HOG000204521 KO:K10875 EMBL:DQ912973 EMBL:AB250666
IPI:IPI00531645 RefSeq:NP_188552.3 UniGene:At.53386 SMR:Q0PCS3
IntAct:Q0PCS3 STRING:Q0PCS3 EnsemblPlants:AT3G19210.1 GeneID:821455
KEGG:ath:AT3G19210 TAIR:At3g19210 InParanoid:Q0PCS3 OMA:SDTHDRF
ProtClustDB:CLSN2693236 Genevestigator:Q0PCS3 Uniprot:Q0PCS3
Length = 910
Score = 3168 (1120.3 bits), Expect = 0., P = 0.
Identities = 634/881 (71%), Positives = 709/881 (80%)
Query: 52 RKSKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLARRLCA 111
RKSKNV L+RGNLVV+RQ LLPRVLSV++GAAVCRKPFKPPCS+GYD+ QL+RRL A
Sbjct: 51 RKSKNVKDLLRGNLVVQRQPLLPRVLSVSDGAAVCRKPFKPPCSHGYDS-TGQLSRRLSA 109
Query: 112 RKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDG-GN 170
RKRFVPWGSS PV+V + +L+ +E + EE LPP ++PLVLWQ EE DG N
Sbjct: 110 RKRFVPWGSSTPVVVALPTKLEASTNIERDEEEEVVCLPPDIEPLVLWQSEE---DGMSN 166
Query: 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
+ I V +LV+FLRPHQREGVQFMF+CVSGL +A I+GCILADDMGLGKTLQSI LLY
Sbjct: 167 VTTIMVHSVLVKFLRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLY 226
Query: 231 TLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290
TLLCQGFDG PMVKKAIIVTPTSLVSNWEAEIKKWVG R+QLIALCESTRDDV+SGIDSF
Sbjct: 227 TLLCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSF 286
Query: 291 TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR---------- 340
T P S+LQVLI+SYETFRMHSSKF SESCDLLICDEAHRLKNDQTLTNR
Sbjct: 287 TRPRSALQVLIISYETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALASLTCKRR 346
Query: 341 ---------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIER 391
NDLEEFFAMVNFTNPG LGDAA+FR YYE IICGREPTATEEEK L +R
Sbjct: 347 VLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADR 406
Query: 392 SSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEE 451
S+ELS+KVNQFILRRTNALLSNHLPPKIIEVVCCK+T LQS LYNHFI SKN+KRA+++
Sbjct: 407 SAELSSKVNQFILRRTNALLSNHLPPKIIEVVCCKMTTLQSTLYNHFISSKNLKRALADN 466
Query: 452 TKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGD 511
KQ+K+LAYITALKKLCNHPKLIYDTIKSGNPGT GFE+C+ FFP EMFSGRSG+WTGGD
Sbjct: 467 AKQTKVLAYITALKKLCNHPKLIYDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGGD 526
Query: 512 GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571
GAWVELSGKMHVL+RLL +LR++TDDRIVLVSNYTQTLDLFAQLCRERRYP+LRLDG+T+
Sbjct: 527 GAWVELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTT 586
Query: 572 ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
ISKRQKLVN NDP+K+EF FLLSSKAGGCGLNLIG NRLVLFDPDWNPANDKQAAARVW
Sbjct: 587 ISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVW 646
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDL 691
RDGQKKRV++YRFLSTGTIEEKVYQRQMSKEGLQKVIQ EQTD+S QGN LSTEDLRDL
Sbjct: 647 RDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVIQHEQTDNSTRQGNLLSTEDLRDL 706
Query: 692 FTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAG 751
F+FH DVRSEIHE M C+RCQN G E+I EG+E N + Q DQE DIGGFA AG
Sbjct: 707 FSFHGDVRSEIHEKMSCSRCQNDASGTENIEEGNENNVDDNACQIDQE--DIGGFAKDAG 764
Query: 752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPI 811
C + LK+SE+Q+GTPLEEDL +WGHHF S SVPDAILQASAGDEVTFVFTNQVDGKLVPI
Sbjct: 765 CFNLLKNSERQVGTPLEEDLGSWGHHFTSKSVPDAILQASAGDEVTFVFTNQVDGKLVPI 824
Query: 812 ESKVSPK-MQATEGNKN-PNNHITNPKPKLDQRXXXXXXXXXXXXDVPSLENSAKFSLSA 869
ES VSPK +++ E N+N P N KP+ R L + ++
Sbjct: 825 ESNVSPKTVESEEHNRNQPVNKRAFNKPQQRPREPLQPLSLNETTKRVKLSTYKRLHGNS 884
Query: 870 SSQPKSMRTSLKGAIKPKLSFGNQLPLKRFSPDNVEHDDDF 910
+ ++ SL+ +P L +V HDDDF
Sbjct: 885 NIDDAQIKMSLQ---RPNLV-------------SVNHDDDF 909
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 1325 (471.5 bits), Expect = 2.7e-139, Sum P(2) = 2.7e-139
Identities = 292/625 (46%), Positives = 396/625 (63%)
Query: 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
V + VDP+L + LRPHQREGV+F++ECV+ G HGCI+AD+MGLGKTLQ I L++T
Sbjct: 141 VHVVVDPVLSKVLRPHQREGVRFLWECVTSR-RIPGSHGCIMADEMGLGKTLQCITLMWT 199
Query: 232 LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFT 291
LL Q D KP + KA++V+P+SLV NW E+ KW+GGR+Q +A+ ++D++ ++ F
Sbjct: 200 LLRQSPDCKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDAGSKDEIDQKLEGFM 259
Query: 292 DPCSSL---QVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN--DQTL-------TN 339
+ + +LI+SYETFR+H S L+ICDE HRLKN +QT T+
Sbjct: 260 NQRGARVPSPILIISYETFRLHVGVLQ-KGSVGLVICDEGHRLKNSENQTYQALDSLNTS 318
Query: 340 R----------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGI 389
R NDL E+F++V+F N G+LG A F++ +E I+ GR+ A+EE+++LG
Sbjct: 319 RRVLISGTPIQNDLLEYFSLVHFVNSGLLGTAHEFKKRFELPILKGRDAAASEEDRRLGE 378
Query: 390 ERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAIS 449
ER EL++ VN+ ++RRT+ +LS +LP KI +VVCC+LTPLQ+ELY F+ +
Sbjct: 379 ERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELR 438
Query: 450 EETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTG 509
E L+ IT+LKKLCNHP LIYD G G D FFPP +S ++
Sbjct: 439 EGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFAGALD---FFPPG-YSSKALE--- 491
Query: 510 GDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT 569
+LSGKM VL +L R R+ D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT
Sbjct: 492 -----PQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGT 546
Query: 570 TSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAAR 629
SI KR K+V FN PS +FVF+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA AR
Sbjct: 547 MSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 606
Query: 630 VWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLR 689
VWRDGQKK +IYR LS GTIEEK++QRQ K+ L + E+ D + +F S +L+
Sbjct: 607 VWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQD---VERHF-SLGELK 662
Query: 690 DLFTFHDDVRSEIHENMHCTRCQNYD------DGAESIGEGDETN-SANKNDQSDQEVTD 742
+LFT + S+ H+ + C RC N DG++ + + N S +K +D EV
Sbjct: 663 ELFTLDEASLSDTHDRLRCRRCVNNQQVWPPPDGSDCTSDLAQWNHSTDKRGLAD-EVLQ 721
Query: 743 IGGFAG---LAGCLHKLKSSEKQLG 764
A + H+ +S E+Q G
Sbjct: 722 AAWHAASTAITFVFHQ-RSHEEQRG 745
Score = 59 (25.8 bits), Expect = 2.7e-139, Sum P(2) = 2.7e-139
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 764 GTPLEEDLNNWGHHFYSMSVPDAILQAS---AGDEVTFVF 800
G+ DL W H + D +LQA+ A +TFVF
Sbjct: 696 GSDCTSDLAQWNHSTDKRGLADEVLQAAWHAASTAITFVF 735
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 1321 (470.1 bits), Expect = 7.2e-139, Sum P(2) = 7.2e-139
Identities = 291/628 (46%), Positives = 397/628 (63%)
Query: 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
V + VDP+L + LRPHQREGV+F++ECV+ G HGCI+AD+MGLGKTLQ I L++T
Sbjct: 142 VHVVVDPILSKVLRPHQREGVKFLWECVTSR-RIPGSHGCIMADEMGLGKTLQCITLMWT 200
Query: 232 LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFT 291
LL Q D KP + KA++V+P+SLV NW E+ KW+GGR+Q +A+ ++D++ ++ F
Sbjct: 201 LLRQSPDCKPEIDKAVVVSPSSLVRNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFM 260
Query: 292 DPCSSL---QVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN--DQTL-------TN 339
+ + +LI+SYETFR+H S L+ICDE HRLKN +QT T+
Sbjct: 261 NQRGARVPSPILIISYETFRLHVGVLQ-KGSVGLVICDEGHRLKNSENQTYQALDSLNTS 319
Query: 340 R----------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGI 389
R NDL E+F++V+F N GILG A F++++E I+ GR+ A+EE++++G
Sbjct: 320 RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKHFELPILKGRDAAASEEDRRVGE 379
Query: 390 ERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAIS 449
ER EL++ VN+ ++RRT+ +LS +LP KI +VVCC+LTPLQ ELY F+ +
Sbjct: 380 ERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQIELYKRFLRQAKPAEELR 439
Query: 450 EETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTG 509
E L+ IT+LKKLCNHP LIYD G FE + FPP ++ ++
Sbjct: 440 EGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDG---FEGTLDIFPPG-YNSKALE--- 492
Query: 510 GDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT 569
+LSGKM VL +L R R+ D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT
Sbjct: 493 -----PQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGT 547
Query: 570 TSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAAR 629
SI KR K+V FN+PS +FVF+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA AR
Sbjct: 548 MSIKKRAKVVERFNNPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 607
Query: 630 VWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLR 689
VWRDGQKK +IYR LS GTIEEK++QRQ K+ L + E+ D + +F S +L+
Sbjct: 608 VWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQD---VERHF-SLGELK 663
Query: 690 DLFTFHDDVRSEIHENMHCTRCQNYD------DGAESIGEGDETN-SANKNDQSD---QE 739
+LFT + S+ H+ + C RC N DG++ + + N S +K D Q
Sbjct: 664 ELFTLDEAKLSDTHDRLRCRRCVNNHQVWPPPDGSDCTSDLAQWNHSTDKRGLKDEVLQA 723
Query: 740 VTDIGGFAGLAGCLHKLKSSEKQLGTPL 767
D A + H+ +S E+Q G L
Sbjct: 724 AWDAASTA-ITFVFHQ-RSHEEQRGLHL 749
Score = 59 (25.8 bits), Expect = 7.2e-139, Sum P(2) = 7.2e-139
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 764 GTPLEEDLNNWGHHFYSMSVPDAILQAS---AGDEVTFVF 800
G+ DL W H + D +LQA+ A +TFVF
Sbjct: 697 GSDCTSDLAQWNHSTDKRGLKDEVLQAAWDAASTAITFVF 736
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 1320 (469.7 bits), Expect = 1.9e-138, Sum P(2) = 1.9e-138
Identities = 284/589 (48%), Positives = 383/589 (65%)
Query: 154 DPLVLWQP------EEPQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAA 206
D LVL++P ++ + D L V + VDP+L + LRPHQREGV+F++ECV+
Sbjct: 116 DALVLYEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSR-RIP 174
Query: 207 GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
G HGCI+AD+MGLGKTLQ I L++TLL Q + KP + KA++V+P+SLV NW E+ KW+
Sbjct: 175 GSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWL 234
Query: 267 GGRVQLIALCESTRDDVVSGIDSFTDPCS---SLQVLIVSYETFRMHSSKFSCSESCDLL 323
GGR+Q +A+ ++D++ ++ F + S +LI+SYETFR+H S L+
Sbjct: 235 GGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQ-KGSVGLV 293
Query: 324 ICDEAHRLKN--DQTL-------TNR----------NDLEEFFAMVNFTNPGILGDAAYF 364
ICDE HRLKN +QT T+R NDL E+F++V+F N GILG A F
Sbjct: 294 ICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEF 353
Query: 365 RRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVC 424
++++E I+ GR+ A+E +++LG ER EL++ VN+ ++RRT+ +LS +LP KI +VVC
Sbjct: 354 KKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVC 413
Query: 425 CKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPG 484
C+LTPLQ+ELY F+ + E L+ IT+LKKLCNHP LIYD G
Sbjct: 414 CRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDG 473
Query: 485 TTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSN 544
G D FPP +S ++ +LSGKM VL +L R R+ D++VLVSN
Sbjct: 474 FVGALD---LFPPG-YSSKALE--------PQLSGKMLVLDYILAVTRSRSSDKVVLVSN 521
Query: 545 YTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLN 604
YTQTLDLF +LCR RRY Y+RLDGT SI KR K+V FN PS +FVF+LSSKAGGCGLN
Sbjct: 522 YTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLN 581
Query: 605 LIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
LIG NRLV+FDPDWNPAND+QA ARVWRDGQKK +IYR LS GTIEEK++QRQ K+ L
Sbjct: 582 LIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKAL 641
Query: 665 QKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQN 713
+ E+ D + +F S +L++LF + S+ H+ +HC RC N
Sbjct: 642 SSCVVDEEQD---VERHF-SLGELKELFILDEASLSDTHDRLHCRRCVN 686
Score = 56 (24.8 bits), Expect = 1.9e-138, Sum P(2) = 1.9e-138
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 764 GTPLEEDLNNWGHHFYSMSVPDAILQAS---AGDEVTFVF 800
G+ DL W H + D +LQA+ A +TFVF
Sbjct: 696 GSDCTSDLAGWNHCTDKWGLRDEVLQAAWDAASTAITFVF 735
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 1312 (466.9 bits), Expect = 4.0e-138, Sum P(2) = 4.0e-138
Identities = 286/591 (48%), Positives = 388/591 (65%)
Query: 156 LVLWQP------EEPQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGI 208
LVL++P ++ + D L V + VDP+L + LRPHQREGV+F++ECV+ G
Sbjct: 118 LVLYEPPPLSAHDQMKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSR-RIPGS 176
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
HGCI+AD+MGLGKTLQ I L++TLL Q + KP + KA++V+P+SLV NW E+ KW+GG
Sbjct: 177 HGCIMADEMGLGKTLQCITLIWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGG 236
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCS---SLQVLIVSYETFRMHSSKFSCSESCDLLIC 325
R+Q +A+ ++D++ ++ F + +LI+SYETFR+H S L+IC
Sbjct: 237 RIQPLAIDGGSKDEIDQKLEGFMNQRGVRVPSPILIISYETFRLHVGVLQ-KGSVGLVIC 295
Query: 326 DEAHRLKN--DQTL-------TNR----------NDLEEFFAMVNFTNPGILGDAAYFRR 366
DE HRLKN +QT T+R NDL E+F++V+F N GILG A F++
Sbjct: 296 DEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKK 355
Query: 367 YYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCK 426
++E I+ GR+ A+E +++LG ER EL++ VN+ ++RRT+ +LS +LP KI +VVCC+
Sbjct: 356 HFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCR 415
Query: 427 LTPLQSELYNHFIHSKNVKRAISEETKQSKI----LAYITALKKLCNHPKLIYDTIKSGN 482
LTPLQ+ELY F+ K K A EE ++ K+ L+ IT LKKLCNHP LIYD
Sbjct: 416 LTPLQTELYKRFL--KQAKPA--EELREGKMTVSSLSSITLLKKLCNHPALIYDKCVEEE 471
Query: 483 PGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLV 542
G FE + FPP +S ++ +LSGKM VL +L R R+ D++VLV
Sbjct: 472 DG---FEGALEIFPPT-YSAKALE--------PQLSGKMLVLDYILAVTRSRSSDKVVLV 519
Query: 543 SNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCG 602
SNYTQTLDLF +LCR RRY Y+RLDGT SI KR K+V FN+P +FVF+LSSKAGGCG
Sbjct: 520 SNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSKAGGCG 579
Query: 603 LNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKE 662
LNLIG NRLV+FDPDWNPAND+QA ARVWRDGQKK +IYR LS GTIEEK++QRQ K+
Sbjct: 580 LNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKK 639
Query: 663 GLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQN 713
L + E+ D + +F S +L++LFT + S+ H+ + C RC N
Sbjct: 640 ALSSCVVDEEQD---VERHF-SLGELKELFTLDEASLSDTHDRLRCRRCVN 686
Score = 61 (26.5 bits), Expect = 4.0e-138, Sum P(2) = 4.0e-138
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 764 GTPLEEDLNNWGHHFYSMSVPDAILQAS---AGDEVTFVF 800
G+ DL W H+ + D +LQA+ A +TFVF
Sbjct: 696 GSDCTSDLAQWNHNTDKRGLKDEVLQAAWDAASTAITFVF 735
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 1309 (465.8 bits), Expect = 2.8e-137, Sum P(2) = 2.8e-137
Identities = 305/713 (42%), Positives = 432/713 (60%)
Query: 91 KPPCSNGYDNGNDQLARRLCARKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLP 150
+PPC + + ++ R + ++ VP + + L + L L R + + L
Sbjct: 61 RPPCLDS--SQHEAFIRSILSKPFKVPIPNYQGPLGS--RALGLKRAGVRRALHD--PLE 114
Query: 151 PGVDPLVLWQP------EEPQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLL 203
G LVL++P ++ + D L V + VDP+L + LRPHQREGV+F++ECV+
Sbjct: 115 EGA--LVLYEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSR- 171
Query: 204 NAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIK 263
G HGCI+AD+MGLGKTLQ I L++TLL Q + KP ++KA++V+P+SLV NW E++
Sbjct: 172 RIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEIEKAVVVSPSSLVKNWYNEVE 231
Query: 264 KWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSL---QVLIVSYETFRMHSSKFSCSESC 320
KW+GGR+Q +A+ ++D++ ++ F + + +LI+SYETFR+H +
Sbjct: 232 KWLGGRIQPLAIDGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLK-KGNV 290
Query: 321 DLLICDEAHRLKN--DQTL-------TNR----------NDLEEFFAMVNFTNPGILGDA 361
L+ICDE HRLKN +QT T+R NDL E+F++V+F N GILG A
Sbjct: 291 GLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTA 350
Query: 362 AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIE 421
F++++E I+ R+ A+E +++ G ER EL VN+ ++RRT+ +LS +LP KI +
Sbjct: 351 HEFKKHFELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQ 410
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSG 481
VVCC+LTPLQ+ELY F+ + + E L+ IT+LKKLCNHP LIYD +
Sbjct: 411 VVCCRLTPLQTELYKRFLRQAKPEEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVAE 470
Query: 482 NPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVL 541
G FE + FPP ++ ++ +LSGKM VL +L R R+ D++VL
Sbjct: 471 EDG---FEGTLGIFPPG-YNSKAVE--------PQLSGKMLVLDYILAVTRSRSSDKVVL 518
Query: 542 VSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGC 601
VSNYTQTLDLF +LCR RRY Y+RLDGT SI KR K+V FN PS +FVF+LSSKAGGC
Sbjct: 519 VSNYTQTLDLFEKLCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGC 578
Query: 602 GLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSK 661
GLNLIG NRLV+FDPDWNPAND+QA ARVWRDGQKK +IYR LS GTIEEK++QRQ K
Sbjct: 579 GLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHK 638
Query: 662 EGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNY------D 715
+ L + E+ D + +F S +L++LFT + S+ H+ +HC RC N
Sbjct: 639 KALSSCVVDEEQD---VERHF-SLGELKELFTLDEASLSDTHDRLHCRRCVNNRQVWPPP 694
Query: 716 DGAESIGEGDETN-SANKNDQSD---QEVTDIGGFAGLAGCLHKLKSSEKQLG 764
DG++ + + N S +K D Q D A + H+ +S E+Q G
Sbjct: 695 DGSDCTSDLAQWNHSTDKRGLQDEVLQAAWDASSTA-ITFVFHQ-RSHEEQRG 745
Score = 56 (24.8 bits), Expect = 2.8e-137, Sum P(2) = 2.8e-137
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 764 GTPLEEDLNNWGHHFYSMSVPDAILQAS---AGDEVTFVF 800
G+ DL W H + D +LQA+ + +TFVF
Sbjct: 696 GSDCTSDLAQWNHSTDKRGLQDEVLQAAWDASSTAITFVF 735
>UNIPROTKB|B4KHL5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7230 "Drosophila mojavensis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH933807 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002002852.1 EnsemblMetazoa:FBtr0161485
GeneID:6576868 KEGG:dmo:Dmoj_GI10760 FlyBase:FBgn0133523
InParanoid:B4KHL5 Uniprot:B4KHL5
Length = 783
Score = 1291 (459.5 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 282/641 (43%), Positives = 397/641 (61%)
Query: 103 DQLARRLCARKRFVPWGSSRPVLVTITNR-LDLPRTVENNVIEENFTLPPGVDPLVLWQP 161
+Q ++ ARK VP + P NR L + RT+ + + P + LVL+ P
Sbjct: 66 EQAIAKVLARKFKVPIANYVPDYGG--NRTLGVRRTIVRRALHD----PQACNALVLYVP 119
Query: 162 ------EEPQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILA 214
E D + V + VDP+L LRPHQREGV+FM+ECV G +GCI+A
Sbjct: 120 PAYTEHERMSMDPSKVQVHVVVDPILSNVLRPHQREGVRFMYECVEG--KRGNFNGCIMA 177
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIA 274
D+MGLGKTLQ + L +TLL Q D KP + KAIIV+P+SLV NWE E KW+ GR+ +A
Sbjct: 178 DEMGLGKTLQCVTLTWTLLRQSPDCKPTISKAIIVSPSSLVKNWEKEFTKWLHGRMHCLA 237
Query: 275 LCESTRDDVVSGIDSF---TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331
+ +++D ++ F T VL++SYETFR+++ C ++ICDE HRL
Sbjct: 238 MEGGSKEDTTRALEQFAMNTATRCGTPVLLISYETFRLYAH-ILCKTEVGMVICDEGHRL 296
Query: 332 KNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSI 372
KN LT + NDL E+F++VNF NP +LG AA F+R +E SI
Sbjct: 297 KNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSI 356
Query: 373 ICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQS 432
+ G+ +T+ E++ ++++ EL VNQ I+RRTN +L+ +LP K VVC KLTP+Q
Sbjct: 357 LRGQNADSTDAERQRALQKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCVKLTPVQL 416
Query: 433 ELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIKSGNPGTTGFED 490
++Y +F+ S V+R++++ +++ + LA IT LKKLCNHP LIY+ I + G FE+
Sbjct: 417 QIYTNFLKSDQVRRSLADCNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKG---FEN 473
Query: 491 CIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLD 550
PP + + + ELSGK +L +L +R +DD++VL+SNYTQTLD
Sbjct: 474 SQNVLPPN-YKPKDVN--------PELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLD 524
Query: 551 LFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNR 610
LF QL R+R+Y Y+RLDGT +I KR K+V+ FNDPS + F+F+LSSKAGGCGLNLIG NR
Sbjct: 525 LFEQLARKRKYTYVRLDGTMTIKKRSKVVDRFNDPSTDCFLFMLSSKAGGCGLNLIGANR 584
Query: 611 LVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQ 670
L +FDPDWNPAND+QA ARVWRDGQKK +IYR +++G+IEEK+ QRQ K+ L I
Sbjct: 585 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTI-- 642
Query: 671 EQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC 711
D++ + + +DL+DLF+F +V S+ H + C RC
Sbjct: 643 --IDNNESSEKHFTRDDLKDLFSFEANVLSDTHNKLKCKRC 681
Score = 61 (26.5 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 25/86 (29%), Positives = 39/86 (45%)
Query: 752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAIL-QA-SAGDEVTFVF--TNQVDGK 807
C ++ T L+ W H + +PD+IL QA +A V+FVF +Q + K
Sbjct: 681 CFQDVQRQPPAENTDCTSHLSQWFHCSNNRGLPDSILSQAWTASKCVSFVFHHRSQAESK 740
Query: 808 LVPI-ESKVSPKMQAT--EGNKNPNN 830
I E S + Q + +KN +N
Sbjct: 741 PAAITEDDESEQQQQSPKRTSKNDDN 766
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 1272 (452.8 bits), Expect = 2.8e-135, Sum P(2) = 2.8e-135
Identities = 271/595 (45%), Positives = 380/595 (63%)
Query: 150 PPGVDPLVLWQP------EEPQNDGGN-LVPITVDPLLVRFLRPHQREGVQFMFECVSGL 202
P + LVL+QP E D LV + VDPLL LRPHQREGV+FM+ECV G
Sbjct: 118 PQACNALVLFQPPNYTEHERMSMDPSKVLVHVVVDPLLSNILRPHQREGVRFMYECVEG- 176
Query: 203 LNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262
+GCI+AD+MGLGKTLQ + L++TLL QG + KP + KAI+V+P+SLV NWE E
Sbjct: 177 -KKGDFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESKPTINKAIVVSPSSLVKNWEKEF 235
Query: 263 KKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSL--QVLIVSYETFRMHSSKFSCSESC 320
KW+ GR+ +A+ T+++ + ++ F+ S L VL++SYETFR+++ + C
Sbjct: 236 TKWLQGRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVLLISYETFRIYA-EILCKYEV 294
Query: 321 DLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDA 361
++ICDE HRLKN LT + NDL E+F++VNF NP +LG A
Sbjct: 295 GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTA 354
Query: 362 AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIE 421
A F+R +E SI+ G+ +TE E+K IE++ EL V+Q I+RRTN +L+ +LP K
Sbjct: 355 ADFKRNFENSILRGQNADSTEGERKKAIEKTQELIGLVDQCIIRRTNQILTKYLPIKFEM 414
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIK 479
V+C KLT +Q +LY +F++S V+R++++ +++ + LA IT LKK+C+HP LI+ I+
Sbjct: 415 VICVKLTAIQLQLYTNFLNSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIHQKIE 474
Query: 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
+ G FE+ P + + E SGK +L +L +R +D++
Sbjct: 475 AKEKG---FENSQNVLPSN-YKPKE--------ICPEWSGKFMLLDFMLAAIRAAGNDKV 522
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599
VL+SNYTQTLDLF QL R+R+Y ++RLDGT SI KR K+V+ FNDP F+F+LSSKAG
Sbjct: 523 VLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSSKAG 582
Query: 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659
GCGLNLIG NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR +++GTIEEK+ QRQ
Sbjct: 583 GCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQRQT 642
Query: 660 SKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC-QN 713
K+ L I D++ + + +DL+DLF+F + S+ HE + C RC QN
Sbjct: 643 HKKSLSSTI----IDNNESSEKHFTRDDLKDLFSFDQKILSDTHEKLKCKRCVQN 693
Score = 74 (31.1 bits), Expect = 2.8e-135, Sum P(2) = 2.8e-135
Identities = 25/92 (27%), Positives = 39/92 (42%)
Query: 752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDE--VTFVFTNQVDGKLV 809
C+ +++ T L+ W H + +PD+IL + D V+FVF ++ K V
Sbjct: 690 CVQNIQTKPPSESTDCTSHLSQWYHCSNNRGLPDSILAQAWTDSKCVSFVFHHRSQAKEV 749
Query: 810 PIESKVSPKMQA--TEGNKNPNNHITNPKPKL 839
+ES S +A E P P P L
Sbjct: 750 -VESPESAAAEAESVEEESQPTQR-KRPSPPL 779
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 1280 (455.6 bits), Expect = 5.9e-135, Sum P(2) = 5.9e-135
Identities = 291/654 (44%), Positives = 406/654 (62%)
Query: 91 KPPCSNGYDNGNDQLARRLCARKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLP 150
+P C++G N ++ R++ ++ +P + VL L L R + + F
Sbjct: 55 RPVCADG--NEHEAFIRKILSKPFKIPIPNYTGVLGL--RALGLRRAGVRKALHDPFE-- 108
Query: 151 PGVDPLVLWQP------EEPQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLL 203
G LVL++P + + D L V + VDP+L + LRPHQREGV+F+++CV+G
Sbjct: 109 DGA--LVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGR- 165
Query: 204 NAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIK 263
+GCI+AD+MGLGKTLQ I L++TLL Q D KP + K I+V+P+SLV NW E+
Sbjct: 166 RIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVG 225
Query: 264 KWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS---LQVLIVSYETFRMHSSKFSCSESC 320
KW+GGRVQ +A+ ++D++ S + +F +LI+SYETFR+H+ +
Sbjct: 226 KWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGK-V 284
Query: 321 DLLICDEAHRLKNDQTLT----N---------------RNDLEEFFAMVNFTNPGILGDA 361
L+ICDE HRLKN T N +NDL E+F++V+F N GILG A
Sbjct: 285 GLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTA 344
Query: 362 AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIE 421
F++ +E I+ GR+ A+++++ G ++ EL + VN+ ++RRT+ +LS +LP KI +
Sbjct: 345 QEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQ 404
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIK 479
VVCC LTPLQ ELY F+ K K S +T + + L+ IT+LKKLCNHP LIY+
Sbjct: 405 VVCCNLTPLQKELYKLFL--KQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCL 462
Query: 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
+G G F+ + FP + +S ++ +LSGKM VL +L R T D++
Sbjct: 463 TGEEG---FDGALDLFP-QNYSTKAVE--------PQLSGKMLVLDYILAMTRTTTSDKV 510
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599
VLVSNYTQTLDLF +LCR RRY Y+RLDGT SI KR K+V FN+PS EF+F+LSSKAG
Sbjct: 511 VLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAG 570
Query: 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659
GCGLNLIG NRLV+FDPDWNPAND+QA ARVWRDGQKK +IYR LSTGTIEEK+ QRQ
Sbjct: 571 GCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQA 630
Query: 660 SKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQN 713
K+ L + E+ D + +F S +LR+LF+ ++ S+ H+ C RC N
Sbjct: 631 HKKALSSCVVDEEQD---VERHF-SLGELRELFSLNEKTLSDTHDRFRCRRCVN 680
Score = 63 (27.2 bits), Expect = 5.9e-135, Sum P(2) = 5.9e-135
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 770 DLNNWGHHFYSMSVPDAILQASAGDEVTFVF 800
DL+NW H + D +LQAS V+FVF
Sbjct: 696 DLSNWHHCADKRGLRDPVLQASWDAAVSFVF 726
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 1279 (455.3 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
Identities = 277/612 (45%), Positives = 387/612 (63%)
Query: 156 LVLWQPE------EPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIH 209
L+L+ PE + + D V + DP++ + LRPHQR+GV+FM++CV+G+ N H
Sbjct: 168 LILYAPEHLSEHAQLKEDKDRKVHVVADPVVGKILRPHQRDGVKFMWDCVTGI-NIPEFH 226
Query: 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGR 269
GCI+AD+MGLGKTLQ I+LL+TLL Q D P V K+IIV P+SLV NW+ EIKKW+G R
Sbjct: 227 GCIMADEMGLGKTLQCISLLWTLLRQSPDACPTVSKSIIVCPSSLVKNWDKEIKKWLGTR 286
Query: 270 VQLIALCESTRDDVVSGIDSF-TDP---CSSLQVLIVSYETFRMHSSKFSCSESCDLLIC 325
+ + + R+ +++ ++SF D C+ + VLI+SYETFR++++ S ++IC
Sbjct: 287 LNAMPVDSGKREQIIACLNSFMADSKMRCA-IPVLIISYETFRLYANILH-SGDVGIVIC 344
Query: 326 DEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRR 366
DE HRLKN + LT + NDL E+F++VNF NPG+LG A+ FR+
Sbjct: 345 DEGHRLKNSENLTYQALSGLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASEFRK 404
Query: 367 YYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCK 426
+E +I+ GR+ A+ E++K G E++ E+ + V + I+RRT+ALL+ +LP K ++CCK
Sbjct: 405 KFENAILKGRDADASSEDQKKGEEKTKEMISLVEKCIIRRTSALLTKYLPVKYEHIICCK 464
Query: 427 LTPLQSELYNHFIHSKNVKRAISEET-KQSKILAYITALKKLCNHPKLIYDTIKSGNPGT 485
+ LQ LYN I + R + ++ + L++IT LKKLCNHP L+YD + P
Sbjct: 465 NSTLQETLYNKLIECEKQNRIVEKDKGATASALSFITHLKKLCNHPYLVYDEFQK--PDN 522
Query: 486 TGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNY 545
C+ FP E F+ +S D ++ SGKM VL +L R+ TDD+ VLVSNY
Sbjct: 523 RFRNKCLSIFP-ESFNPKSF-----DPSF---SGKMKVLDYILAVTRKTTDDKFVLVSNY 573
Query: 546 TQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNL 605
TQT+D F +LC+ R Y ++RLDG+ SI +R K+V+ FNDP+ F FLLSSKAGGCGLNL
Sbjct: 574 TQTIDQFMELCKLRGYDFVRLDGSMSIKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNL 633
Query: 606 IGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ 665
IG NRLV+FDPDWNPAND QA ARVWRDGQKK FIYR L+TG+IEEK++QRQ K+ L
Sbjct: 634 IGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCFIYRLLATGSIEEKMFQRQTHKKALS 693
Query: 666 KVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGD 725
+ D+ S+E LR+LF V S+ HE + C RC G ES+
Sbjct: 694 SCV----VDAGEDVARHFSSEQLRELFKLESTVASDTHEKLKCKRCIQ---GVESVDP-- 744
Query: 726 ETNSANKNDQSD 737
TN+ +D S+
Sbjct: 745 PTNADCASDLSN 756
Score = 57 (25.1 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSM-SVPDAILQA--SAGDEVTFVFTNQVDGKL 808
C+ ++S + DL+NW H S V D +L+A G ++FVF +
Sbjct: 735 CIQGVESVDPPTNADCASDLSNWFHSQKSARKVADNVLRAVFECGS-ISFVFHQKSHN-- 791
Query: 809 VPIESKVSPKMQATEGNKNPN 829
V ++ KV K++ + + P+
Sbjct: 792 VEVK-KVQEKVEEVDEDYVPS 811
>UNIPROTKB|B4M9A8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7244 "Drosophila virilis" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH940654
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002057711.1 STRING:B4M9A8 EnsemblMetazoa:FBtr0234205
GeneID:6634100 KEGG:dvi:Dvir_GJ18280 FlyBase:FBgn0205441
InParanoid:B4M9A8 Uniprot:B4M9A8
Length = 786
Score = 1272 (452.8 bits), Expect = 2.9e-133, Sum P(2) = 2.9e-133
Identities = 282/641 (43%), Positives = 397/641 (61%)
Query: 103 DQLARRLCARKRFVPWGSSRPVLVTITNR-LDLPRTVENNVIEENFTLPPGVDPLVLWQP 161
+Q ++ ARK VP + P NR L + R++ + + P + LVL+ P
Sbjct: 66 EQAIAKVLARKFKVPIANYVPDYGG--NRTLGVRRSIVRRALHD----PQACNALVLYTP 119
Query: 162 ------EEPQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILA 214
E D L V + VDP+L LRPHQREGV+FM+ECV G +GCI+A
Sbjct: 120 PAYTEHERMSLDPSKLQVHVVVDPILSNVLRPHQREGVRFMYECVEG--KRGNFNGCIMA 177
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIA 274
D+MGLGKTLQ + L +TLL Q D KP + KAI+V+P+SLV NWE E KW+ GR+ +A
Sbjct: 178 DEMGLGKTLQCVTLTWTLLRQSPDCKPTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCLA 237
Query: 275 LCESTRDDVVSGIDSF---TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331
+ +++D ++ F T VL++SYETFR++S C ++ICDE HRL
Sbjct: 238 MEGGSKEDTTRTLEQFAMNTATRCGTPVLLISYETFRLYSH-ILCKTEVGMVICDEGHRL 296
Query: 332 KNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSI 372
KN LT + NDL E+F++VNF NP +LG + F+R +E +I
Sbjct: 297 KNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTGSDFKRNFENAI 356
Query: 373 ICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQS 432
+ G+ +T+ E++ +E++ EL VNQ I+RRTN +L+ +LP K VVC KLT +Q
Sbjct: 357 LRGQNADSTDAERERALEKTQELVGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQL 416
Query: 433 ELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIKSGNPGTTGFED 490
+LY +F+ S V+R++++ T ++ + LA IT LKKLCNHP LIY+ I + G FE+
Sbjct: 417 QLYTNFLKSDQVRRSLADCTDKTTLTALADITTLKKLCNHPDLIYEKIAAREKG---FEN 473
Query: 491 CIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLD 550
PP + + + ELSGK +L +L +R +DD++VL+SNYTQTLD
Sbjct: 474 SQNVLPPN-YKPKDVN--------PELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLD 524
Query: 551 LFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNR 610
LF QL R+R+Y Y+RLDGT +I KR K+V+ FNDP+ + F+F+LSSKAGGCGLNLIG NR
Sbjct: 525 LFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFNDPATDCFLFMLSSKAGGCGLNLIGANR 584
Query: 611 LVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQ 670
L +FDPDWNPAND+QA ARVWRDGQKK +IYR +++G+IEEK+ QRQ K+ L I
Sbjct: 585 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSSII- 643
Query: 671 EQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC 711
+ DS+ + +F + +DL+DLF F +V S+ H + C RC
Sbjct: 644 DNNDSA--EKHF-TRDDLKDLFRFEANVLSDTHNKLKCKRC 681
Score = 55 (24.4 bits), Expect = 2.9e-133, Sum P(2) = 2.9e-133
Identities = 30/95 (31%), Positives = 44/95 (46%)
Query: 725 DETNSANKNDQSDQEVTDIGGF-AGLAGCLH-KLKSS----EKQLGTPLEED-----LNN 773
D +SA K+ D ++ D+ F A + H KLK + Q P E L+
Sbjct: 644 DNNDSAEKHFTRD-DLKDLFRFEANVLSDTHNKLKCKRCFQDVQRQPPPENSDCTSHLSQ 702
Query: 774 WGHHFYSMSVPDAIL-QA-SAGDEVTFVFTNQVDG 806
W H + +PD+IL QA A V+FVF ++ G
Sbjct: 703 WFHCSNNRGLPDSILSQAWMASKCVSFVFHHRSQG 737
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
Identities = 298/648 (45%), Positives = 408/648 (62%)
Query: 154 DPLVLWQPEEPQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCI 212
+P +L E+ + D + V + VDP+L R LRPHQREGV+F+++CV+ G HGCI
Sbjct: 111 EPPLLSAHEQLKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTSR-RIPGSHGCI 169
Query: 213 LADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQL 272
+AD+MGLGKTLQ I L++TLL Q D KP ++KA++V+P+SLV NW E++KW+GGR+Q
Sbjct: 170 MADEMGLGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQP 229
Query: 273 IALCESTRDDVVSGIDSFTDPCSSLQV----LIVSYETFRMHSSKFSCSESCDLLICDEA 328
+A+ +++++ + F + L+V LI+SYETFR+H+ S L+ICDE
Sbjct: 230 LAIDGGSKEEIDRKLVGFMNQ-RGLRVPSPILIISYETFRLHAEALQ-KGSVGLVICDEG 287
Query: 329 HRLKNDQTLT----N---------------RNDLEEFFAMVNFTNPGILGDAAYFRRYYE 369
HRLKN + T N +NDL E+F++V+F N GILG A F+R++E
Sbjct: 288 HRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFE 347
Query: 370 TSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTP 429
I+ GR+ A+E E++ G ER EL + VN+ ++RRT+ +LS +LP KI +VVCC+LTP
Sbjct: 348 LPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTP 407
Query: 430 LQSELYNHFIHSKNVKRAISEETKQSKI----LAYITALKKLCNHPKLIYDTIKSGNPGT 485
LQ+ELY +F+ K K EE K+ KI L+ IT+LKKLCNHP LIYD G
Sbjct: 408 LQAELYKNFL--KQAKPV--EELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEGF 463
Query: 486 TGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNY 545
G D FP +S +S +LSGKM VL +L + ++D++VLVSNY
Sbjct: 464 MGALD---LFPAG-YSTKSVE--------PQLSGKMLVLDYILAVTKSTSNDKVVLVSNY 511
Query: 546 TQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNL 605
TQTLDLF +LCR RRY Y+RLDGT SI KR K+V FN PS EF+F+LSSKAGGCGLNL
Sbjct: 512 TQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNL 571
Query: 606 IGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ 665
IG NRLV+FDPDWNPAND+QA ARVWRDGQKK +IYR LSTGTIEEK++QRQ K+ L
Sbjct: 572 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALS 631
Query: 666 KVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYD------DGAE 719
+ E+ D + +F S +L++LF+ ++ S+ H+ + C RC N +G++
Sbjct: 632 SCVVDEEQD---VERHF-SLGELKELFSLNETTISDTHDKIKCRRCVNGHQVRPPPEGSD 687
Query: 720 SIGEGDETNS-ANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTP 766
+ + N A+K D V A + H S E+Q G P
Sbjct: 688 CTSDLSQWNHCADKRGLQDS-VLKAAWDAAVTFTFHH-HSHEEQRGIP 733
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
Identities = 298/648 (45%), Positives = 408/648 (62%)
Query: 154 DPLVLWQPEEPQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCI 212
+P +L E+ + D + V + VDP+L R LRPHQREGV+F+++CV+ G HGCI
Sbjct: 120 EPPLLSAHEQLKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTSR-RIPGSHGCI 178
Query: 213 LADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQL 272
+AD+MGLGKTLQ I L++TLL Q D KP ++KA++V+P+SLV NW E++KW+GGR+Q
Sbjct: 179 MADEMGLGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQP 238
Query: 273 IALCESTRDDVVSGIDSFTDPCSSLQV----LIVSYETFRMHSSKFSCSESCDLLICDEA 328
+A+ +++++ + F + L+V LI+SYETFR+H+ S L+ICDE
Sbjct: 239 LAIDGGSKEEIDRKLVGFMNQ-RGLRVPSPILIISYETFRLHAEALQ-KGSVGLVICDEG 296
Query: 329 HRLKNDQTLT----N---------------RNDLEEFFAMVNFTNPGILGDAAYFRRYYE 369
HRLKN + T N +NDL E+F++V+F N GILG A F+R++E
Sbjct: 297 HRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFE 356
Query: 370 TSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTP 429
I+ GR+ A+E E++ G ER EL + VN+ ++RRT+ +LS +LP KI +VVCC+LTP
Sbjct: 357 LPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTP 416
Query: 430 LQSELYNHFIHSKNVKRAISEETKQSKI----LAYITALKKLCNHPKLIYDTIKSGNPGT 485
LQ+ELY +F+ K K EE K+ KI L+ IT+LKKLCNHP LIYD G
Sbjct: 417 LQAELYKNFL--KQAKPV--EELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEGF 472
Query: 486 TGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNY 545
G D FP +S +S +LSGKM VL +L + ++D++VLVSNY
Sbjct: 473 MGALD---LFPAG-YSTKSVE--------PQLSGKMLVLDYILAVTKSTSNDKVVLVSNY 520
Query: 546 TQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNL 605
TQTLDLF +LCR RRY Y+RLDGT SI KR K+V FN PS EF+F+LSSKAGGCGLNL
Sbjct: 521 TQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNL 580
Query: 606 IGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ 665
IG NRLV+FDPDWNPAND+QA ARVWRDGQKK +IYR LSTGTIEEK++QRQ K+ L
Sbjct: 581 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALS 640
Query: 666 KVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYD------DGAE 719
+ E+ D + +F S +L++LF+ ++ S+ H+ + C RC N +G++
Sbjct: 641 SCVVDEEQD---VERHF-SLGELKELFSLNETTISDTHDKIKCRRCVNGHQVRPPPEGSD 696
Query: 720 SIGEGDETNS-ANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTP 766
+ + N A+K D V A + H S E+Q G P
Sbjct: 697 CTSDLSQWNHCADKRGLQDS-VLKAAWDAAVTFTFHH-HSHEEQRGIP 742
>UNIPROTKB|B4NXB8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7245 "Drosophila yakuba" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CM000157
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872
EMBL:FJ219212 RefSeq:XP_002087763.1 STRING:B4NXB8 GeneID:6526655
KEGG:dya:Dyak_GE14966 FlyBase:FBgn0232556 Uniprot:B4NXB8
Length = 784
Score = 1278 (454.9 bits), Expect = 6.0e-133, Sum P(2) = 6.0e-133
Identities = 270/595 (45%), Positives = 385/595 (64%)
Query: 150 PPGVDPLVLWQPE---EPQNDGGN----LVPITVDPLLVRFLRPHQREGVQFMFECVSGL 202
P + LVL+ P E + G + LV + VDPLL LRPHQREGV+FM+ECV G
Sbjct: 115 PVACNALVLFNPPAYTEHERMGMDPTKVLVHVVVDPLLSNILRPHQREGVRFMYECVEG- 173
Query: 203 LNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262
+GCI+AD+MGLGKTLQ + L++TLL QG + KP + KAI+V+P+SLV NWE E
Sbjct: 174 -KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEF 232
Query: 263 KKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSL--QVLIVSYETFRMHSSKFSCSESC 320
KW+ GR+ + + T+++ + ++ F+ S L VL++SYETFR+++ + C
Sbjct: 233 TKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVLLISYETFRIYA-EILCKYEV 291
Query: 321 DLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDA 361
++ICDE HRLKN LT + NDL E++++VNF NP +LG A
Sbjct: 292 GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTA 351
Query: 362 AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIE 421
A F+R +E++I+ G+ +TE E++ IE++ EL V+Q I+RRTN +L+ +LP K
Sbjct: 352 AVFKRNFESAILRGQNTDSTEGERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEM 411
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIK 479
V+C KLT +Q ELY +F+ S V+R++++ +++ + LA IT LKK+C+HP LIY+ I
Sbjct: 412 VICAKLTSIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKIT 471
Query: 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
+ G FE+ P ++ + + ELSGK +L +L +R +D++
Sbjct: 472 AREKG---FENSQNVLPSN-YNTKDLN--------PELSGKFMLLDFMLAAIRADGNDKV 519
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599
VL+SNYTQTLDLF QL R+R+Y ++RLDGT SI KR K+V+ FNDP + F+F+LSSKAG
Sbjct: 520 VLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAG 579
Query: 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659
GCGLNLIG NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR +++G+IEEK+ QRQ
Sbjct: 580 GCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSIEEKILQRQT 639
Query: 660 SKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC-QN 713
K+ L I D++ + + +DL+DLFTF D+ S+ HE + C RC QN
Sbjct: 640 HKKSLSSTI----IDNNESAEKHFTRDDLKDLFTFDADILSDTHEKLKCKRCVQN 690
Score = 46 (21.3 bits), Expect = 6.0e-133, Sum P(2) = 6.0e-133
Identities = 18/83 (21%), Positives = 36/83 (43%)
Query: 752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDE--VTFVFTNQVDGK-L 808
C+ ++ T L+ W H + +PD IL + D V+FVF ++ + +
Sbjct: 687 CVQNVQVKPPPDNTDCTSHLSQWYHCSNNRGLPDNILAQAWTDCKCVSFVFHHRSQAQEI 746
Query: 809 VPIESKVSPKM--QATEGNKNPN 829
V I + + + + + K P+
Sbjct: 747 VAIAEEAASEQPEEKPDRRKRPS 769
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 1262 (449.3 bits), Expect = 7.6e-133, Sum P(2) = 7.6e-133
Identities = 277/648 (42%), Positives = 404/648 (62%)
Query: 100 NGNDQLA-RRLCARKRFVPWGSSRPVLVTITNR-LDLPRTVENNVIEENFTLPPGVDPLV 157
N +LA ++ ARK VP + P NR L + R++ + + P + LV
Sbjct: 66 NSEYELAIAKVLARKFKVPIANYVPDYGG--NRCLGVRRSIVRRALHD----PQACNALV 119
Query: 158 LWQP------EEPQNDGGN-LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHG 210
L+ P E + D LV + VDPLL LRPHQREGV+FM++CV G +G
Sbjct: 120 LYTPPVYSEHERMKMDPTKILVHVVVDPLLSNILRPHQREGVRFMYDCVEG--KKGNFNG 177
Query: 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRV 270
CI+AD+MGLGKTLQ + L++TLL Q + KP + KAIIV+P+SLV NWE E KW+ GR+
Sbjct: 178 CIMADEMGLGKTLQCVTLVWTLLRQSCECKPTITKAIIVSPSSLVKNWEKEFTKWLHGRM 237
Query: 271 QLIALCESTRDDVVSGIDSFTDPCSS---LQVLIVSYETFRMHSSKFSCSESCDLLICDE 327
+A+ +++D + ++ F+ S+ VL++SYETFR++++ C ++ICDE
Sbjct: 238 HCLAMEGGSKEDTIKALEQFSMNTSTRLGTPVLLISYETFRIYAN-ILCQNEVGMVICDE 296
Query: 328 AHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYY 368
HRLKN LT + NDL E+F++VNF NP +LG AA F+R +
Sbjct: 297 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNF 356
Query: 369 ETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLT 428
E I+ G+ ++++E++ +E++ EL VNQ I+RRTN +L+ +LP K V+C +LT
Sbjct: 357 ENPILKGQNTDSSDKERERALEKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVICVRLT 416
Query: 429 PLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIKSGNPGTT 486
+Q E Y +F+ S V+R++++ +++ + LA IT LKKLC+HP LIY+ + + + G
Sbjct: 417 SVQLEFYTNFLKSDKVRRSLADCNEKASLTALADITTLKKLCSHPDLIYEKMLARDKG-- 474
Query: 487 GFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYT 546
FE+ P + + + ELSGK +L +L +R +DD++VL+SNYT
Sbjct: 475 -FENSQNILPTN-YKPKDLN--------PELSGKFMLLDFMLATIRANSDDKVVLISNYT 524
Query: 547 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLI 606
QTLDLF QL R+R+Y ++RLDGT +I KR K+V+ FNDP + F+F+LSSKAGGCGLNLI
Sbjct: 525 QTLDLFEQLARKRKYTFVRLDGTMTIKKRSKVVDRFNDPENDCFLFMLSSKAGGCGLNLI 584
Query: 607 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK 666
G NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR +++G+IEEK+ QRQ K+ L
Sbjct: 585 GANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSS 644
Query: 667 VIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC-QN 713
I D++ + + +DL+DLF+F + S+ HE + C RC QN
Sbjct: 645 TI----IDNNESAEKHFTRDDLKDLFSFDSKILSDTHEKLKCKRCLQN 688
Score = 61 (26.5 bits), Expect = 7.6e-133, Sum P(2) = 7.6e-133
Identities = 21/88 (23%), Positives = 38/88 (43%)
Query: 752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAIL-QA-SAGDEVTFVFTNQVDGKLV 809
CL +++ T L+ W H + +PD IL QA +A V+FVF ++ + +
Sbjct: 685 CLQNVQTKPPPEDTDCTSHLSQWFHCSNNRGLPDDILAQAWTASKCVSFVFHHRSQAQAI 744
Query: 810 PIESKVSPKMQATE-GNKNPNNHITNPK 836
+ + + T K+ T P+
Sbjct: 745 KESEETKQEAEDTSIPAKSKRKRSTTPE 772
>FB|FBgn0002989 [details] [associations]
symbol:okr "okra" species:7227 "Drosophila melanogaster"
[GO:0046843 "dorsal appendage formation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IGI;IMP;TAS] [GO:0006302 "double-strand break
repair" evidence=IMP;TAS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=TAS] [GO:0006417 "regulation of translation" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0030261 "chromosome condensation" evidence=TAS] [GO:0006281
"DNA repair" evidence=NAS] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0045003
"double-strand break repair via synthesis-dependent strand
annealing" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006417 GO:GO:0051301 GO:GO:0007067 EMBL:AE014134
GO:GO:0003677 GO:GO:0010212 GO:GO:0006338 GO:GO:0004386
GO:GO:0030261 GO:GO:0008298 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0046843 GO:GO:0007131
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG EMBL:Y10229
EMBL:AF069779 EMBL:AF069780 EMBL:AY069599 EMBL:FJ219215
EMBL:FJ219218 EMBL:FJ219219 EMBL:FJ219220 EMBL:FJ219221
EMBL:FJ219222 EMBL:FJ219223 EMBL:FJ219224 EMBL:FJ219225
EMBL:FJ219226 EMBL:FJ219227 EMBL:FJ219228 EMBL:FJ219229
EMBL:FJ219230 EMBL:FJ219231 EMBL:FJ219232 EMBL:FJ219233
EMBL:FJ219234 EMBL:FJ219235 EMBL:FJ219236 EMBL:FJ219237
EMBL:FJ219238 EMBL:FJ219239 EMBL:FJ219240 EMBL:FJ219241
EMBL:FJ219242 EMBL:FJ219243 EMBL:FJ219244 EMBL:FJ219245
EMBL:FJ219246 EMBL:FJ219247 RefSeq:NP_476661.1 UniGene:Dm.19774
ProteinModelPortal:O76460 SMR:O76460 IntAct:O76460 MINT:MINT-807919
STRING:O76460 PRIDE:O76460 EnsemblMetazoa:FBtr0077673 GeneID:33507
KEGG:dme:Dmel_CG3736 UCSC:CG3736-RA CTD:33507 FlyBase:FBgn0002989
InParanoid:O76460 PhylomeDB:O76460 GenomeRNAi:33507 NextBio:783944
Bgee:O76460 Uniprot:O76460
Length = 784
Score = 1270 (452.1 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
Identities = 266/595 (44%), Positives = 385/595 (64%)
Query: 150 PPGVDPLVLWQPE---EPQNDGGN----LVPITVDPLLVRFLRPHQREGVQFMFECVSGL 202
P + LVL+ P E + G + LV + VDPLL LRPHQREGV+FM+ECV G
Sbjct: 115 PMACNALVLFHPPAYTEHERMGMDPTKVLVHVVVDPLLSNILRPHQREGVRFMYECVEG- 173
Query: 203 LNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262
+GCI+AD+MGLGKTLQ + L++TLL QG + KP + KAI+V+P+SLV NWE E
Sbjct: 174 -KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEF 232
Query: 263 KKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSL--QVLIVSYETFRMHSSKFSCSESC 320
KW+ GR+ + + T+++ + ++ F+ + L VL++SYETFR+++ + C
Sbjct: 233 TKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLISYETFRIYA-EILCKYEV 291
Query: 321 DLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDA 361
++ICDE HRLKN LT + NDL E++++VNF NP +LG A
Sbjct: 292 GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTA 351
Query: 362 AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIE 421
A F+R +E++I+ G+ +TE+E++ IE++ EL V+Q I+RRTN +L+ +LP K
Sbjct: 352 AVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEM 411
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIK 479
V+C KLT +Q ELY +F+ S V+R++++ +++ + LA IT LKK+C+HP LIY+ +
Sbjct: 412 VICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLT 471
Query: 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
+ G FE+ P + + + ELSGK +L +L +R +D++
Sbjct: 472 AREKG---FENSQNVLPSN-YKPKDLN--------PELSGKFMLLDFMLAAIRAEGNDKV 519
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599
VL+SNYTQTLDLF QL R+R+Y ++RLDGT SI KR K+V+ FNDP + F+F+LSSKAG
Sbjct: 520 VLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAG 579
Query: 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659
GCGLNLIG NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR +++G+IEEK+ QRQ
Sbjct: 580 GCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQT 639
Query: 660 SKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC-QN 713
K+ L I D++ + + +DL+DLFTF ++ S+ H+ + C RC QN
Sbjct: 640 HKKSLSSTI----IDNNESAEKHFTRDDLKDLFTFDANILSDTHDKLKCKRCVQN 690
Score = 49 (22.3 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDE--VTFVFTNQVDGK-L 808
C+ ++ T L+ W H + +PD IL + D V+FVF ++ + +
Sbjct: 687 CVQNIQMKPPPEDTDCTSHLSQWYHCSNNRGLPDNILAQAWMDCKCVSFVFHHRSQAQEI 746
Query: 809 VPIESKVSPKMQATEG-NKNPNNHITNPKPKLD 840
VP S + +AT+ + P + + P D
Sbjct: 747 VP-----SAEEEATDQPEEKPESRKRSSTPASD 774
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
Identities = 296/647 (45%), Positives = 406/647 (62%)
Query: 154 DPLVLWQPEEPQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCI 212
+P +L E+ + D + V + VDP+L R LRPHQREGV+F+++CV+ G HGCI
Sbjct: 111 EPPLLSAHEQLKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTSR-RIPGSHGCI 169
Query: 213 LADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQL 272
+AD+MGLGKTLQ I L++TLL Q D KP ++KA++V+P+SLV NW E++KW+GGR+Q
Sbjct: 170 MADEMGLGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQP 229
Query: 273 IALCESTRDDVVSG-IDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICDEAH 329
+A+ +++++ + S + +LI+SYETFR+H+ S L+ICDE H
Sbjct: 230 LAIDGGSKEEIDRKLVGSMNQRGLRVPSPILIISYETFRLHAEALQ-KGSVGLVICDEGH 288
Query: 330 RLKNDQTLT----N---------------RNDLEEFFAMVNFTNPGILGDAAYFRRYYET 370
RLKN + T N +NDL E+F++V+F N GILG A F+R++E
Sbjct: 289 RLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFEL 348
Query: 371 SIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPL 430
I+ GR+ A+E E++ G ER EL + VN+ ++RRT+ +LS +LP KI +VVCC+LTPL
Sbjct: 349 PILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPL 408
Query: 431 QSELYNHFIHSKNVKRAISEETKQSKI----LAYITALKKLCNHPKLIYDTIKSGNPGTT 486
Q+ELY +F+ K K EE K+ KI L+ IT+LKKLCNHP LIYD G
Sbjct: 409 QAELYKNFL--KQAKPV--EELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEGFM 464
Query: 487 GFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYT 546
G D FP +S +S +LSGKM VL +L + ++D++VLVSNYT
Sbjct: 465 GALD---LFPAG-YSTKSVE--------PQLSGKMLVLDYILAVTKSTSNDKVVLVSNYT 512
Query: 547 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLI 606
QTLDLF +LCR RRY Y+RLDGT SI KR K+V FN PS EF+F+LSSKAGGCGLNLI
Sbjct: 513 QTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLI 572
Query: 607 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK 666
G NRLV+FDPDWNPAND+QA ARVWRDGQKK +IYR LSTGTIEEK++QRQ K+ L
Sbjct: 573 GANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSS 632
Query: 667 VIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYD------DGAES 720
+ E+ D + +F S +L++LF+ ++ S+ H+ + C RC N +G++
Sbjct: 633 CVVDEEQD---VERHF-SLGELKELFSLNETTISDTHDKIKCRRCVNGHQVRPPPEGSDC 688
Query: 721 IGEGDETNS-ANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTP 766
+ + N A+K D V A + H S E+Q G P
Sbjct: 689 TSDLSQWNHCADKRGLQDS-VLKAAWDAAVTFTFHH-HSHEEQRGIP 733
>UNIPROTKB|B3NAN8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7220 "Drosophila erecta" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH954177
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001968502.1
EnsemblMetazoa:FBtr0144523 GeneID:6543248 KEGG:der:Dere_GG24469
FlyBase:FBgn0116601 Uniprot:B3NAN8
Length = 784
Score = 1270 (452.1 bits), Expect = 3.3e-132, Sum P(2) = 3.3e-132
Identities = 267/595 (44%), Positives = 385/595 (64%)
Query: 150 PPGVDPLVLWQPE---EPQNDGGN----LVPITVDPLLVRFLRPHQREGVQFMFECVSGL 202
P + LVL+ P E + G + LV + VDPLL LRPHQREGV+FM+ECV G
Sbjct: 115 PVACNALVLFHPPAYTEHERMGMDPSKVLVHVVVDPLLSNILRPHQREGVRFMYECVEG- 173
Query: 203 LNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262
+GCI+AD+MGLGKTLQ + L++TLL QG + KP + KAI+V+P+SLV NWE E
Sbjct: 174 -KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEF 232
Query: 263 KKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSL--QVLIVSYETFRMHSSKFSCSESC 320
KW+ GR+ + + T+++ + ++ F+ S L VL++SYETFR+++ + C
Sbjct: 233 TKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVLLISYETFRIYA-EILCKYEV 291
Query: 321 DLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDA 361
++ICDE HRLKN LT + NDL E++++VNF NP +LG A
Sbjct: 292 GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTA 351
Query: 362 AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIE 421
A F+R +E++I+ G+ +T+ E++ I ++ EL V+Q I+RRTN +L+ +LP K
Sbjct: 352 AVFKRNFESAILRGQNTDSTDAERQRAIAKTQELIGLVDQCIIRRTNQILTKYLPVKFEM 411
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIK 479
V+C KLT +Q ELY +F+ S V+R++++ +++ + LA IT LKK+C+HP LIY+ I
Sbjct: 412 VICAKLTSIQLELYTNFLKSDQVRRSLADCKEKASLTALADITTLKKICSHPNLIYEKIT 471
Query: 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
+ + G FE+ P ++ + + ELSGK +L +L +R +D++
Sbjct: 472 ARDKG---FENSQNVLPSN-YNAKDLN--------PELSGKFMLLDFMLAAIRADGNDKV 519
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599
VL+SNYTQTLDLF QL R+R+Y ++RLDGT SI KR K+V+ FNDP + F+F+LSSKAG
Sbjct: 520 VLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAG 579
Query: 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659
GCGLNLIG NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR +++G+IEEK+ QRQ
Sbjct: 580 GCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQT 639
Query: 660 SKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC-QN 713
K+ L I D++ + + +DL+DLFTF D+ S+ H+ + C RC QN
Sbjct: 640 HKKSLSSTI----IDNNESAEKHFTRDDLKDLFTFDADILSDTHDKLKCKRCVQN 690
Score = 47 (21.6 bits), Expect = 3.3e-132, Sum P(2) = 3.3e-132
Identities = 16/74 (21%), Positives = 31/74 (41%)
Query: 752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDE--VTFVFTNQVDGKLV 809
C+ ++ T L+ W H + +PD IL + D V+FVF ++ + +
Sbjct: 687 CVQNIQMKPPPEDTDCTSHLSQWYHCSNNRGLPDNILAQAWMDCKCVSFVFHHRSQAQEI 746
Query: 810 PIESKVSPKMQATE 823
++ + Q E
Sbjct: 747 VASAEEAASEQPEE 760
>UNIPROTKB|B4GS98 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7234 "Drosophila persimilis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043150 EMBL:CH479189 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002021802.1 EnsemblMetazoa:FBtr0192316
GeneID:6596280 KEGG:dpe:Dper_GL26701 FlyBase:FBgn0164282
Uniprot:B4GS98
Length = 782
Score = 1258 (447.9 bits), Expect = 1.1e-131, Sum P(2) = 1.1e-131
Identities = 261/568 (45%), Positives = 369/568 (64%)
Query: 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
LV + VDPLL LRPHQREGV+FM+ECV G +GCI+AD+MGLGKTLQ +AL++
Sbjct: 139 LVHVVVDPLLSNILRPHQREGVRFMYECVEG--KRGNFNGCIMADEMGLGKTLQCVALVW 196
Query: 231 TLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290
TLL Q + KP + K IIV+P+SLV NWE E KW+ GR+ +A+ ++++ V ++ F
Sbjct: 197 TLLKQSAECKPTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQF 256
Query: 291 TDPCSS---LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR------- 340
+ S+ VL++SYETFR+++ + C ++ICDE HRLKN LT +
Sbjct: 257 SMNASTRLGTPVLLISYETFRIYA-EILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKT 315
Query: 341 ------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG 388
NDL E+F++VNF NP +LG AA F+R +E I+ G+ +T++E+
Sbjct: 316 KRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRA 375
Query: 389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI 448
+E++ EL V+Q I+RRTN +L+ +LP K V+C KLTP+Q +LY +F+ S V+R++
Sbjct: 376 LEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQVRRSL 435
Query: 449 SEETKQSKI--LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGS 506
++ +++ + LA IT LKKLC+HP LI + I +G G FE+ P G
Sbjct: 436 ADCKEKASLTALADITTLKKLCSHPNLICEKIAAGEKG---FENSQNILPINY--NPKGE 490
Query: 507 WTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRL 566
ELSGK +L +L +R +D++VL+SNYTQTLDLF L R+R+Y ++RL
Sbjct: 491 INP------ELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFELLARKRKYGFVRL 544
Query: 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQA 626
DGT SI KR K+V+ FNDP + F+F+LSSKAGGCGLNLIG NRL +FDPDWNPAND+QA
Sbjct: 545 DGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQA 604
Query: 627 AARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTE 686
ARVWRDGQKK +IYR +++G+IEEK+ QRQ K+ L I D++ + + +
Sbjct: 605 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTI----IDNNESAEKHFTRD 660
Query: 687 DLRDLFTFHDDVRSEIHENMHCTRC-QN 713
DL+DLF+F D+ S+ H+ + C RC QN
Sbjct: 661 DLKDLFSFDPDILSDTHDKLKCKRCVQN 688
Score = 54 (24.1 bits), Expect = 1.1e-131, Sum P(2) = 1.1e-131
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDE--VTFVFTNQVDGKLV 809
C+ ++ T L+ W H + +PD IL + D V+FVF ++ + +
Sbjct: 685 CVQNVQMMPPPDDTDCTSHLSQWYHCSNNRGLPDNILAQAWTDSKCVSFVFHHRSQSQKI 744
Query: 810 ---PI-ESKVSPKMQATEGNKNP 828
P E+ V K++ E K P
Sbjct: 745 EATPATETSVEAKLEP-ERRKRP 766
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 1257 (447.5 bits), Expect = 2.9e-131, Sum P(2) = 2.9e-131
Identities = 261/568 (45%), Positives = 369/568 (64%)
Query: 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
LV + VDPLL LRPHQREGV+FM+ECV G +GCI+AD+MGLGKTLQ +AL++
Sbjct: 139 LVHVVVDPLLSNILRPHQREGVRFMYECVEG--KRGNFNGCIMADEMGLGKTLQCVALVW 196
Query: 231 TLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290
TLL Q + KP + K IIV+P+SLV NWE E KW+ GR+ +A+ ++++ V ++ F
Sbjct: 197 TLLKQSAECKPTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQF 256
Query: 291 TDPCSS---LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR------- 340
+ S+ VL++SYETFR+++ + C ++ICDE HRLKN LT +
Sbjct: 257 SMNASTRLGTPVLLISYETFRIYA-EILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKT 315
Query: 341 ------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG 388
NDL E+F++VNF NP +LG AA F+R +E I+ G+ +T++E+
Sbjct: 316 KRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRA 375
Query: 389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI 448
+E++ EL V+Q I+RRTN +L+ +LP K V+C KLTP+Q +LY +F+ S V+R++
Sbjct: 376 LEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQVRRSL 435
Query: 449 SEETKQSKI--LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGS 506
++ +++ + LA IT LKKLC+HP LI + I + G FE+ P G
Sbjct: 436 ADCKEKASLTALADITTLKKLCSHPNLICEKIAAEEKG---FENSQNILPINY--NPKGE 490
Query: 507 WTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRL 566
ELSGK +L +L +R +D++VL+SNYTQTLDLF QL R+R+Y ++RL
Sbjct: 491 INP------ELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFEQLARKRKYGFVRL 544
Query: 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQA 626
DGT SI KR K+V+ FNDP + F+F+LSSKAGGCGLNLIG NRL +FDPDWNPAND+QA
Sbjct: 545 DGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQA 604
Query: 627 AARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTE 686
ARVWRDGQKK +IYR +++G+IEEK+ QRQ K+ L I D++ + + +
Sbjct: 605 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTI----IDNNESAEKHFTRD 660
Query: 687 DLRDLFTFHDDVRSEIHENMHCTRC-QN 713
DL+DLF+F D+ S+ H+ + C RC QN
Sbjct: 661 DLKDLFSFDPDILSDTHDKLKCKRCVQN 688
Score = 51 (23.0 bits), Expect = 2.9e-131, Sum P(2) = 2.9e-131
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDE--VTFVFTNQVDGKLV 809
C+ ++ T L+ W H + +PD IL + D V+FVF ++ + +
Sbjct: 685 CVQNVQMKPPPDDTDCTSHLSQWYHCSNNRGLPDNILAQAWTDSKCVSFVFHHRSQSQKI 744
Query: 810 ---PI-ESKVSPKMQATEGNKNP 828
P E+ V K + E K P
Sbjct: 745 ETTPATETSVEAKPEP-ERRKRP 766
>UNIPROTKB|B4JCS7 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7222 "Drosophila grimshawi" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 EMBL:CH916368
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001988299.1
STRING:B4JCS7 EnsemblMetazoa:FBtr0146056 GeneID:6562163
KEGG:dgr:Dgri_GH10642 FlyBase:FBgn0118123 InParanoid:B4JCS7
OMA:TYQALMG Uniprot:B4JCS7
Length = 786
Score = 1252 (445.8 bits), Expect = 4.8e-131, Sum P(2) = 4.8e-131
Identities = 285/693 (41%), Positives = 411/693 (59%)
Query: 53 KSKNV--DALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLARRLC 110
KSK+ L++ N +Q L R ++ + + P P ++ +Q ++
Sbjct: 16 KSKDAFTPPLLKKNKRACQQELEKRQSALRDATNIVELPL--PIRFTANSEYEQAIAKVL 73
Query: 111 ARKRFVPWGSSRPVLVTITNR-LDLPRTVENNVIEENFTLPPGVDPLVLWQP------EE 163
ARK VP + P NR L + R++ + + P + LVL+ P E
Sbjct: 74 ARKFKVPIANYVPDYGG--NRSLGVRRSIVRRALHD----PLACNALVLFTPPVYTEHER 127
Query: 164 PQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKT 222
D L V + VDPLL LRPHQREGV+FM+ECV G +GCI+AD+MGLGKT
Sbjct: 128 MSLDPSKLQVHVVVDPLLSNVLRPHQREGVRFMYECVEG--KRGSFNGCIMADEMGLGKT 185
Query: 223 LQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDD 282
LQ + L +TLL Q D KP + KAI+V+P+SLV NWE E KW+ GR+ +A+ ++++
Sbjct: 186 LQCVTLTWTLLRQSADCKPTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEE 245
Query: 283 VVSGIDSF---TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTN 339
++ F T VL++SYETFR+++ C ++ICDE HRLKN LT
Sbjct: 246 TTRTLEQFAMNTSTRCGTPVLLISYETFRLYAH-ILCKTEVGMVICDEGHRLKNSDNLTY 304
Query: 340 R-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTA 380
+ NDL E+F++VNF NP +LG A F+R +E +I+ G+ +
Sbjct: 305 QALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENAILRGQNADS 364
Query: 381 TEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIH 440
T+ E++ + ++ EL VNQ I+RRTN +L+ +LP K VVC KLT +Q ++Y +F+
Sbjct: 365 TDTERERALLKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQLQIYTNFLK 424
Query: 441 SKNVKRAISEETKQSKILAY--ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498
S V R++++ +++ + A IT LKKLCNHP LIY+ + + G FE+ P
Sbjct: 425 SDQVCRSLADCNEKTSLTALSDITTLKKLCNHPDLIYEKLAAREKG---FENSQNVLPAN 481
Query: 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE 558
+ + + ELSGK +L +L +R +DD++VL+SNYTQTLDLF QL R+
Sbjct: 482 -YKPKDIN--------PELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARK 532
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDW 618
R+Y Y+RLDGT +I KR K+V+ FNDPS + F+F+LSSKAGGCGLNLIG NRL +FDPDW
Sbjct: 533 RKYSYVRLDGTMTIKKRSKVVDRFNDPSSDCFLFMLSSKAGGCGLNLIGANRLFMFDPDW 592
Query: 619 NPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
NPAND+QA ARVWRDGQKK +IYR +++G+IEEK+ QRQ K+ L I D++ +
Sbjct: 593 NPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTI----IDNNES 648
Query: 679 QGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC 711
+ +DL+DLF+F +V S+ H + C RC
Sbjct: 649 VEKHFTRDDLKDLFSFEANVLSDTHNKLKCKRC 681
Score = 54 (24.1 bits), Expect = 4.8e-131, Sum P(2) = 4.8e-131
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAIL-QA-SAGDEVTFVFTNQVDGKLV 809
C ++ T L+ W H + +PD IL QA +A V+FVF ++ +
Sbjct: 681 CFQDVQRQPPADNTDCTSHLSQWFHCSNNRGLPDTILSQAWTASKCVSFVFHHRSQAEAK 740
Query: 810 P 810
P
Sbjct: 741 P 741
>DICTYBASE|DDB_G0282997 [details] [associations]
symbol:rad54 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282997 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281
EMBL:AAFI02000049 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K10875 RefSeq:XP_639303.1
ProteinModelPortal:Q54RP8 STRING:Q54RP8 EnsemblProtists:DDB0232369
GeneID:8623874 KEGG:ddi:DDB_G0282997 InParanoid:Q54RP8 OMA:ERPILAG
ProtClustDB:CLSZ2728985 Uniprot:Q54RP8
Length = 931
Score = 1186 (422.6 bits), Expect = 9.1e-126, Sum P(2) = 9.1e-126
Identities = 262/583 (44%), Positives = 362/583 (62%)
Query: 150 PPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIH 209
P + LVL+ P + G N + VDP+L + LRPHQREGVQFMF+C+ G +
Sbjct: 251 PLAPNSLVLFTPVDIT--GENRIHCVVDPILSQKLRPHQREGVQFMFDCLLGFRGGFKGN 308
Query: 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGR 269
GCILADDMGLGK++Q+I +L+TLL QG G+ KKA+IV P +LV NW E+KKW+G
Sbjct: 309 GCILADDMGLGKSIQAITILWTLLKQGPKGESTAKKAVIVAPCTLVGNWGQELKKWLGDG 368
Query: 270 VQLIALCESTRDDVVSGIDSFTD-PCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEA 328
V +A+ EST+ +G T+ VLI+SY+ R++ S L+ICDE
Sbjct: 369 VNTVAIGESTK----TGRAKLTELEFGKADVLIISYDQLRIYCEDICKITSIGLVICDEG 424
Query: 329 HRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYE 369
HRLKN + T + NDL EF+AMVNF NPG+L + A F+ Y+
Sbjct: 425 HRLKNAEIKTTKAVSMIPTARRVILSGTPIQNDLTEFYAMVNFVNPGVLKNVATFKNVYD 484
Query: 370 TSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTP 429
I+ R P A++EEK++G +RS ELS +QFILRRT + + +LPPK+ V+ CKLTP
Sbjct: 485 APIVASRNPDASDEEKEIGRQRSLELSRLTSQFILRRTAFVNTQYLPPKVEYVIFCKLTP 544
Query: 430 LQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFE 489
LQ +Y H I K K + T + L IT LKKL N +L+Y K + GT+
Sbjct: 545 LQLSIYKHLI--KEAKDSAFASTTGA--LPLITTLKKLSNCAELVYTPDKETDVGTS--- 597
Query: 490 DCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQT 548
++ FP E W + S K+ + RLL ++R ++ D+ V++SNYTQT
Sbjct: 598 -ILKLFPKE--------WNP-KVFQPQYSSKLLFVDRLLANIRNSKSGDKTVIISNYTQT 647
Query: 549 LDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGG 608
L++ A +C+ R Y Y +LDG+T+ +KRQ+LVN +NDP++ EFVFLLSSKAGG GLNLIGG
Sbjct: 648 LEVLATMCKTRGYAYFQLDGSTANAKRQQLVNLYNDPARPEFVFLLSSKAGGVGLNLIGG 707
Query: 609 NRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
N LVLFD DWNPAND Q+ ARVWR+GQKK V IYR +TGTIEEK++QRQ++K+ L I
Sbjct: 708 NHLVLFDADWNPANDAQSMARVWREGQKKIVSIYRTFTTGTIEEKIFQRQLTKQALSTSI 767
Query: 669 QQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC 711
+ +D+S + ++DL+D+FT +D + H+ + C +C
Sbjct: 768 TEGDSDNSPS----FDSKDLKDIFTLREDTLCDTHDMLSC-KC 805
Score = 70 (29.7 bits), Expect = 9.1e-126, Sum P(2) = 9.1e-126
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 770 DLNNWGHHFYSMS-VPDAILQASAGDEVTFVFTNQ---VD-GKLVPIESKVSPKMQATEG 824
+LN+W HHF+ M + D + ++ D TFVF N VD K S + T
Sbjct: 825 ELNSW-HHFHQMEKIKDQKVASACQDIATFVFVNDKGPVDKNKSKEKTSNTTTTTTTTTS 883
Query: 825 NKNPNNHITNPKP 837
+ ++P P
Sbjct: 884 TSTSKSEKSSPPP 896
>ASPGD|ASPL0000027956 [details] [associations]
symbol:AN10677 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0006311 "meiotic gene conversion" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001305 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:LSEYFAL
EnsemblFungi:CADANIAT00003558 Uniprot:C8VG87
Length = 833
Score = 1212 (431.7 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 271/575 (47%), Positives = 357/575 (62%)
Query: 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
VP+ +DP L + LRPHQ VQF++ C +G+++ HGCI+AD MGLGKTLQ I+L++T
Sbjct: 231 VPVVIDPRLAKVLRPHQ---VQFLYRCTTGMIDR-NAHGCIMADGMGLGKTLQCISLMWT 286
Query: 232 LLCQGFD-GKPMVKKAIIVTPTSLVSNWEAEIKKWVG-GRVQLIALC-ESTRDDVVSGID 288
LL Q + GK ++K II P+SLV NW E+ KW+G + A+ ++++ ++ S +
Sbjct: 287 LLKQSPEAGKTTIQKCIIACPSSLVGNWANELGKWLGKDTITPFAVDGKASKTELTSQLK 346
Query: 289 SFTDPCS-SL--QVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLT----N-- 339
+ S+ VLIVSYET RM+ S LL+CDE HRLKN ++LT N
Sbjct: 347 QWAISSGRSIVRPVLIVSYETLRMYVDTLKDSP-IGLLLCDEGHRLKNKESLTWTALNSL 405
Query: 340 -------------RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKK 386
+NDL E+FA++NF NP +LG FR+ +E I+ GR+ TEE++K
Sbjct: 406 NVQRRVILSGTPIQNDLSEYFALLNFANPDLLGSQNEFRKRFEIPILKGRDAAGTEEDRK 465
Query: 387 LGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKR 446
G ER +ELS+ VN+FI+RRTN +LS +LP K VV C L+ Q +LY HFI S +K
Sbjct: 466 KGDERLAELSSIVNKFIIRRTNDILSKYLPVKYEHVVFCNLSQFQLDLYKHFIDSPEIKS 525
Query: 447 AISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGS 506
+ K S+ L I LKKLCNHP L+ + + PG C FP + +
Sbjct: 526 LL--RGKGSQPLKAIGILKKLCNHPDLL--NLSTDLPG------CEHAFPDDYVPVEARG 575
Query: 507 WTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRL 566
W SGKM VL R+L +RQ T+D+IVL+SNYTQTLDLF +LCR R Y LRL
Sbjct: 576 RDRDVRPWY--SGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRAYGCLRL 633
Query: 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQA 626
DGT ++ KRQKLV+ FNDP EFVFLLSSKAGGCGLNLIG NRLVLFDPDWNPA D+QA
Sbjct: 634 DGTMNVKKRQKLVDKFNDPDGEEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPAADQQA 693
Query: 627 AARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTE 686
ARVWRDGQKK F+YRF++TG+IEEK++QRQ K+ L + DS+ S +
Sbjct: 694 LARVWRDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCV----VDSAEDVERHFSLD 749
Query: 687 DLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESI 721
LR+LF F S+ H+ C RC+ DG + I
Sbjct: 750 SLRELFQFKPGTTSDTHDTFKCKRCRA--DGTQYI 782
Score = 39 (18.8 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 151 PGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFL 184
P VD + +PE+ ND + + +P++ + L
Sbjct: 182 PTVDDIDEVKPEKQDNDASDKIQKLDEPIVHKSL 215
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 1206 (429.6 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 274/616 (44%), Positives = 382/616 (62%)
Query: 157 VLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADD 216
++ PEE + + VP+ +DP L + LRPHQ GV+F++ C +GL++A GCI+AD+
Sbjct: 230 IVTNPEEKLSKYPD-VPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDARA-KGCIMADE 287
Query: 217 MGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVG-GRVQLIAL 275
MGLGKTLQ + L++TLL Q GK ++K IIV P+SLV NW EI KW+G G + +A+
Sbjct: 288 MGLGKTLQCLTLMWTLLRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEGALTPLAV 347
Query: 276 C-ESTRD-DVVSGIDSF-TDPCSSL--QVLIVSYETFRMHSSKFSCSESCDLLICDEAHR 330
+ST++ ++ + + + T ++ VLI+SYET R + K + +E L++ DE HR
Sbjct: 348 DGKSTKNSELGTALQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGTE-VGLMLADEGHR 406
Query: 331 LKNDQTLT----N---------------RNDLEEFFAMVNFTNPGILGDAAYFRRYYETS 371
LKN +LT N +NDL E+F+++NF NPG LG F++ YE +
Sbjct: 407 LKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEFKKNYENA 466
Query: 372 IICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQ 431
I+ GR+ TA++EE++ G ++ +ELS V++FI+RRTN +LS +LP K V+ L+P+Q
Sbjct: 467 ILKGRDSTASDEEREKGDKKLNELSQMVSKFIIRRTNDILSKYLPIKYEYVLFTGLSPMQ 526
Query: 432 SELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDC 491
++YNHFI S +K+ + Q L I LKKLCNHP L+ D + G E+
Sbjct: 527 KDIYNHFITSPEIKKLMKGTGSQP--LKAIGMLKKLCNHPDLL-DLPED----VEGSEEF 579
Query: 492 IRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL 551
I +G S S W SGK +L R L + + TDD+IVL+SNYTQTLDL
Sbjct: 580 IPDDYQSSIAGGSASRNREIQTW--FSGKFLILERFLQKINKETDDKIVLISNYTQTLDL 637
Query: 552 FAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRL 611
++CR ++Y LRLDGT +I+KRQKLV+ FNDP+ EF+FLLSSKAGGCG+NLIG NRL
Sbjct: 638 IEKMCRYKKYGVLRLDGTMNINKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRL 697
Query: 612 VLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
VL DPDWNPA+D+QA ARVWRDGQKK FIYRF+STGTIEEK++QRQ K L + E
Sbjct: 698 VLMDPDWNPASDQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDE 757
Query: 672 QTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDG----AESIGEGDET 727
+ D S +LR LF F D + + H+ +C RC+ D G A ++ GD T
Sbjct: 758 KEDVE----RLFSVANLRQLFKFQPDTQCDTHDTFNCNRCKG-DKGQFIKAPAMLYGDAT 812
Query: 728 NSANKNDQSDQEVTDI 743
+ N Q+ DI
Sbjct: 813 TWNHLNHQALANNEDI 828
Score = 45 (20.9 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 79 VTEGAAVCRKPFKPPCSNGYDN 100
VT+ A KPFK P S+ N
Sbjct: 29 VTDSATRLSKPFKVPFSSSTQN 50
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 1206 (429.6 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 274/616 (44%), Positives = 382/616 (62%)
Query: 157 VLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADD 216
++ PEE + + VP+ +DP L + LRPHQ GV+F++ C +GL++A GCI+AD+
Sbjct: 230 IVTNPEEKLSKYPD-VPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDARA-KGCIMADE 287
Query: 217 MGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVG-GRVQLIAL 275
MGLGKTLQ + L++TLL Q GK ++K IIV P+SLV NW EI KW+G G + +A+
Sbjct: 288 MGLGKTLQCLTLMWTLLRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEGALTPLAV 347
Query: 276 C-ESTRD-DVVSGIDSF-TDPCSSL--QVLIVSYETFRMHSSKFSCSESCDLLICDEAHR 330
+ST++ ++ + + + T ++ VLI+SYET R + K + +E L++ DE HR
Sbjct: 348 DGKSTKNSELGTALQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGTE-VGLMLADEGHR 406
Query: 331 LKNDQTLT----N---------------RNDLEEFFAMVNFTNPGILGDAAYFRRYYETS 371
LKN +LT N +NDL E+F+++NF NPG LG F++ YE +
Sbjct: 407 LKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEFKKNYENA 466
Query: 372 IICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQ 431
I+ GR+ TA++EE++ G ++ +ELS V++FI+RRTN +LS +LP K V+ L+P+Q
Sbjct: 467 ILKGRDSTASDEEREKGDKKLNELSQMVSKFIIRRTNDILSKYLPIKYEYVLFTGLSPMQ 526
Query: 432 SELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDC 491
++YNHFI S +K+ + Q L I LKKLCNHP L+ D + G E+
Sbjct: 527 KDIYNHFITSPEIKKLMKGTGSQP--LKAIGMLKKLCNHPDLL-DLPED----VEGSEEF 579
Query: 492 IRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL 551
I +G S S W SGK +L R L + + TDD+IVL+SNYTQTLDL
Sbjct: 580 IPDDYQSSIAGGSASRNREIQTW--FSGKFLILERFLQKINKETDDKIVLISNYTQTLDL 637
Query: 552 FAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRL 611
++CR ++Y LRLDGT +I+KRQKLV+ FNDP+ EF+FLLSSKAGGCG+NLIG NRL
Sbjct: 638 IEKMCRYKKYGVLRLDGTMNINKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRL 697
Query: 612 VLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
VL DPDWNPA+D+QA ARVWRDGQKK FIYRF+STGTIEEK++QRQ K L + E
Sbjct: 698 VLMDPDWNPASDQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDE 757
Query: 672 QTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDG----AESIGEGDET 727
+ D S +LR LF F D + + H+ +C RC+ D G A ++ GD T
Sbjct: 758 KEDVE----RLFSVANLRQLFKFQPDTQCDTHDTFNCNRCKG-DKGQFIKAPAMLYGDAT 812
Query: 728 NSANKNDQSDQEVTDI 743
+ N Q+ DI
Sbjct: 813 TWNHLNHQALANNEDI 828
Score = 45 (20.9 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 79 VTEGAAVCRKPFKPPCSNGYDN 100
VT+ A KPFK P S+ N
Sbjct: 29 VTDSATRLSKPFKVPFSSSTQN 50
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
Identities = 272/576 (47%), Positives = 358/576 (62%)
Query: 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
V + +DP L R LRPHQ EGV+F+++CV+G ++ +GCI+AD+MGLGKTLQ IALL+T
Sbjct: 252 VAVVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCA-NGCIMADEMGLGKTLQCIALLWT 310
Query: 232 LLCQGFD-GKPMVKKAIIVTPTSLVSNWEAEIKKWVG--GRVQLIALCESTRDDVVSGID 288
LL Q GKP ++KAII P+SLV NW E+ KW+G I +S++ +++ +
Sbjct: 311 LLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQ 370
Query: 289 SFTDPCS---SLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLT------- 338
+ + VLI SYET R + + +E +L+CDE HRLKN +LT
Sbjct: 371 QWASVHGRQVTRPVLIASYETLRSYVEHLNNAE-IGMLLCDEGHRLKNSDSLTFTALDKL 429
Query: 339 N------------RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKK 386
N +NDL E+F+++NF NPG+LG FR+ YE I+ GR+ TE++K+
Sbjct: 430 NVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKE 489
Query: 387 LGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKR 446
G + +EL+ VN+FI+RRTN +LS +LP K VV C L+ Q LY HFI S + +
Sbjct: 490 NGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEINK 549
Query: 447 AISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGS 506
+ Q L I LKK+CNHP L+ N T E C FPP F R
Sbjct: 550 ILRGTGSQP--LKAIGLLKKICNHPDLL-------NL-TEDLEGCEALFPPG-FIPRE-- 596
Query: 507 WTGGD-GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLR 565
G D LSGKM VL R+L ++Q TDD+IVL+SNYT TLDLF QLCR R Y LR
Sbjct: 597 LRGRDRNIDSSLSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALR 656
Query: 566 LDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQ 625
LDGT +++KRQ+LV+ FNDP K+ FVFLLSSKAGGCG+NLIG NRL+LFDPDWNPA D+Q
Sbjct: 657 LDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQ 716
Query: 626 AAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLST 685
A ARVWRDGQKK F+YRF++TGTIEEK++QRQ K+ L + E D + +F S
Sbjct: 717 ALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQD---VERHF-SL 772
Query: 686 EDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESI 721
++LR LF +D E HE C RC+ DG + I
Sbjct: 773 DNLRQLFQLNDHTVCETHETYKCKRCR---DGKQFI 805
>SGD|S000003131 [details] [associations]
symbol:RAD54 "DNA-dependent ATPase that stimulates strand
exchange" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032079 "positive regulation
of endodeoxyribonuclease activity" evidence=IDA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IMP] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0030491 "heteroduplex formation"
evidence=IDA] [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 SGD:S000003131 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0006338 GO:GO:0004386 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0000722
GO:GO:0015616 GO:GO:0032392 GO:GO:0032079 HOGENOM:HOG000204521
GO:GO:0030491 KO:K10875 OMA:LSEYFAL OrthoDB:EOG4T1MVP EMBL:M63232
EMBL:Z72685 PIR:JH0440 RefSeq:NP_011352.1 ProteinModelPortal:P32863
SMR:P32863 DIP:DIP-509N IntAct:P32863 MINT:MINT-605745
STRING:P32863 EnsemblFungi:YGL163C GeneID:852713 KEGG:sce:YGL163C
CYGD:YGL163c NextBio:972079 Genevestigator:P32863
GermOnline:YGL163C Uniprot:P32863
Length = 898
Score = 1050 (374.7 bits), Expect = 1.7e-119, Sum P(3) = 1.7e-119
Identities = 238/538 (44%), Positives = 325/538 (60%)
Query: 204 NAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIK 263
N G +GCI+AD+MGLGKTLQ IAL++TLL QG GK ++ K IIV P+SLV+NW E+
Sbjct: 324 NNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELI 383
Query: 264 KWVGGRVQLIALCESTRDDVVSG---IDSFTDPCSSLQ-------VLIVSYETFRMHSSK 313
KW+G + + + G + + Q VLI+SYET R + +
Sbjct: 384 KWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLRRNVDQ 443
Query: 314 F-SCSESCDLLICDEAHRLKNDQTLTN-------------------RNDLEEFFAMVNFT 353
+C+ L++ DE HRLKN +LT +NDL E+FA+++F+
Sbjct: 444 LKNCNVG--LMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFALLSFS 501
Query: 354 NPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSN 413
NPG+LG A FR+ +E I+ GR+ AT++E G + +LS V++FI+RRTN +L+
Sbjct: 502 NPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRRTNDILAK 561
Query: 414 HLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKL 473
+LP K V+ L PLQ+ELYN I S+ VK+ + + S+ L I LKKLCNHP L
Sbjct: 562 YLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVV-KGVGGSQPLRAIGILKKLCNHPNL 620
Query: 474 IYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ 533
+ + + ED + P+ ++ GS D + S K +L R L ++
Sbjct: 621 LNFEDEFDD------EDDLEL--PDDYN-MPGS-KARD-VQTKYSAKFSILERFLHKIKT 669
Query: 534 RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFL 593
+DD+IVL+SNYTQTLDL ++CR + Y +RLDGT SI+KRQKLV+ FNDP EF+FL
Sbjct: 670 ESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFL 729
Query: 594 LSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEK 653
LSSKAGGCG+NLIG NRL+L DPDWNPA D+QA ARVWRDGQKK FIYRF+STGTIEEK
Sbjct: 730 LSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEK 789
Query: 654 VYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC 711
++QRQ K L + + D S+++LR LF +++ E HE HC RC
Sbjct: 790 IFQRQSMKMSLSSCVVDAKEDVE----RLFSSDNLRQLFQKNENTICETHETYHCKRC 843
Score = 112 (44.5 bits), Expect = 1.7e-119, Sum P(3) = 1.7e-119
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLL 203
VP+ +DP L + LRPHQ EGV+F++ CV+GL+
Sbjct: 259 VPVVIDPKLAKILRPHQVEGVRFLYRCVTGLV 290
Score = 49 (22.3 bits), Expect = 1.7e-119, Sum P(3) = 1.7e-119
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 68 KRQSLLPRVLSVTEGAAVCRKPFKPPCSN 96
+R L+PR ++V + KPF+ P N
Sbjct: 18 ERPRLVPRPINVQDSVNRLTKPFRVPYKN 46
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 254/588 (43%), Positives = 358/588 (60%)
Query: 168 GGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIA 227
G +V + +DP LV LRPHQ+EG+ F++ECV G+ G G ILAD+MGLGKTLQ I+
Sbjct: 281 GFPVVDVVIDPHLVYHLRPHQKEGIMFLYECVMGM-RVNGRCGAILADEMGLGKTLQCIS 339
Query: 228 LLYTLLCQG-FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALC------EST 279
L++TL CQG + GKP+VKK +IVTP SLV+NW E +KW+G R+++ + E T
Sbjct: 340 LIWTLQCQGPYGGKPVVKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFPVDQDHKVEEFT 399
Query: 280 RDDVVSG-IDSFTDPCSSL-QV------LIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331
R S I S+ SL Q+ L++ E R+ +S + + L C++ L
Sbjct: 400 RSPFYSVLIISYEMLLRSLDQIKNVKFGLLICDEGHRLKNSAIKTTAALISLSCEKRVIL 459
Query: 332 KNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIER 391
+NDL+EFFA+++F NPGILG +++R+ YE II R+P+A+EEEKKLG +R
Sbjct: 460 TGTPV---QNDLQEFFALIDFVNPGILGSLSFYRKVYEEPIIISRQPSASEEEKKLGEKR 516
Query: 392 SSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEE 451
+ EL+ FILRRT +++ +LPPKI VV C+ LQ ELY ++S+ V+ +
Sbjct: 517 AVELTCLTGLFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQAVRFCLQGL 576
Query: 452 TKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTT--GFEDCIRFFPP-EMFSGRSGSWT 508
S L I ALKKLCNHP L++++IK +T G E+ + ++F
Sbjct: 577 LGNSPHLICIGALKKLCNHPCLLFNSIKEKECSSTWDGKEEKSLYEALLDVFPADYNPLM 636
Query: 509 GGDGAWVELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLD 567
+ E SGK+ VL +LL + + R +++VLVSNYTQTLD+ ++C+ Y Y RLD
Sbjct: 637 FSE----EESGKLQVLLKLLAVIHELRPTEKVVLVSNYTQTLDILQEVCKRHGYTYTRLD 692
Query: 568 GTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAA 627
G T +S+RQ++V+ FN ++F+FLLSSKAGG GLNLIGG+ L+L+D DWNPA D QA
Sbjct: 693 GQTPVSQRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAM 752
Query: 628 ARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTED 687
+RVWRDGQK V IYR L+TGTIEEK+YQRQ+SK+ L + S Q S E+
Sbjct: 753 SRVWRDGQKNPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTRTSEHIQ---FSVEE 809
Query: 688 LRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQ 735
L++LFT H+ H+ + C C DG G+ E ++N Q
Sbjct: 810 LKNLFTLHESSHCVTHDLLDC-ECTGDQDGT---GDSLEKFPVSRNCQ 853
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
Identities = 245/572 (42%), Positives = 356/572 (62%)
Query: 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
+V + +DP LV +LRPHQ+EG+ F++ECV G+ G G ILAD+MGLGKTLQ I+L++
Sbjct: 283 VVDVVIDPHLVYYLRPHQKEGITFLYECVMGM-RVNGRCGAILADEMGLGKTLQCISLIW 341
Query: 231 TLLCQG-FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVG-GRVQLIALC------ESTRDD 282
TL CQG + GKP+VKK +IVTP SLV+NW+ E +KW+G R+++ + E T+
Sbjct: 342 TLQCQGPYGGKPIVKKTLIVTPGSLVNNWKKEFQKWLGIERIKIFTVDQDHKVEEFTKSP 401
Query: 283 VVSG-IDSFTDPCSSL-QV------LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND 334
S I S+ SL Q+ L++ E R+ +S + + L C++ L
Sbjct: 402 FYSVLIISYEMLLRSLDQIKNVKFDLLICDEGHRLKNSTIKTTTALISLSCEKRIILTGT 461
Query: 335 QTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE 394
+NDL+EFF +++F NPGILG + +R+ YE II R+P+A+EEE++LG +R++E
Sbjct: 462 PV---QNDLQEFFTLIDFVNPGILGSLSAYRKIYEEPIIISRQPSASEEERELGEQRAAE 518
Query: 395 LSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQ 454
L+ FILRRT +++ +LPPKI VV C+ LQ LY ++S+ V+ + +
Sbjct: 519 LTCLTGLFILRRTQEVINQYLPPKIENVVFCRPGALQIALYRKLLNSQAVRFCLQGLLEN 578
Query: 455 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAW 514
+ L I ALKKLCNHP L++ +IK +T E R ++ G +
Sbjct: 579 TSHLICIGALKKLCNHPCLLFGSIKEKESNSTWDESEER----NLYEGLMNVFPADYNPI 634
Query: 515 V---ELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTT 570
+ E SGK+ VL++LL +R+ R +++VLVSNYT+TLD+ ++C+ Y Y RLDG T
Sbjct: 635 MFTEEESGKLQVLSKLLAVIRELRPAEKVVLVSNYTRTLDILQEVCKRHGYAYTRLDGQT 694
Query: 571 SISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARV 630
IS+RQ++V+ FN ++F+FLLSSKAGG GLNLIGG+ L+L+D DWNPA D QA +RV
Sbjct: 695 PISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRV 754
Query: 631 WRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNF-LSTEDLR 689
WRDGQK V IYR L+TGTIEEK+YQRQ+SK+GL + D S T + S E+L+
Sbjct: 755 WRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAV----VDLSKTSDHIQFSVEELK 810
Query: 690 DLFTFHDDVRSEIHENMHCTRCQNYDDGAESI 721
+LFT H+ H+ + C C + +S+
Sbjct: 811 NLFTLHESSHCVTHDLLDC-ECTGENHTGDSL 841
>ZFIN|ZDB-GENE-060810-50 [details] [associations]
symbol:rad54b "RAD54 homolog B (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060810-50 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX511010
IPI:IPI00513586 Ensembl:ENSDART00000138496 Bgee:E9QHY4
Uniprot:E9QHY4
Length = 917
Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
Identities = 260/611 (42%), Positives = 363/611 (59%)
Query: 159 WQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMG 218
WQ + G LV + +DP L LRPHQ+EGV F++EC+ G+ AG G ILAD+MG
Sbjct: 286 WQYNK---SGAPLVDVVIDPHLTNHLRPHQKEGVVFLYECLMGM-RLAGRCGAILADEMG 341
Query: 219 LGKTLQSIALLYTLLCQG-FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALC 276
LGKTLQ + +L+TLL QG + G+P++K+A++V P SLV NW AE KW+G R+ + +
Sbjct: 342 LGKTLQCVCVLWTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRERISVYTVD 401
Query: 277 ESTR-DDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQ 335
+ R +D VS + CS VL++SYE + +LICDE HRLKN
Sbjct: 402 QDHRVEDFVS-----SPLCS---VLVISYEMLLRSVDRLK-ELDFGVLICDEGHRLKNSN 452
Query: 336 ----------TLTNR---------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGR 376
+ T R NDL+EF++++ F NPGILG +A +R+ YE I+ R
Sbjct: 453 IKTAGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILRSR 512
Query: 377 EPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYN 436
+P+ TEEE+ +G ER++EL F LRRT +++ +L +I V CK T LQ LY
Sbjct: 513 QPSCTEEERCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYR 572
Query: 437 HFIHSKNVKRAIS-EET-KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRF 494
+ ++ ++ +S T S L I ALKKLCNHP L+Y+T++ +E ++
Sbjct: 573 VLLSTRPIRACLSGSHTYTHSPHLVCINALKKLCNHPALLYNTLQE--KADEMYEGEVKE 630
Query: 495 FPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ--RTDDRIVLVSNYTQTLDLF 552
PE +S +G+++ D SGK+ VL LL ++ RTD R+VLVSN+TQTLDL
Sbjct: 631 LFPEEYS--TGAFSTAD------SGKLLVLTDLLSAIQHVNRTD-RVVLVSNHTQTLDLL 681
Query: 553 AQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLV 612
+C + Y + RLDG T + +RQK+V+ FN P + F+ LLSSKAGG GLNLIG + LV
Sbjct: 682 QDVCDQIGYKWCRLDGQTPVGQRQKIVDSFNSPHSSSFLLLLSSKAGGVGLNLIGASHLV 741
Query: 613 LFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ 672
L+D DWNPAND QA ARVWRDGQKK V IYRFL+TG+IEEK+YQRQ+SK+GL +
Sbjct: 742 LYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTVVD-- 799
Query: 673 TDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETN--SA 730
A +F S E+LRDLF F + H+ ++C +C + S+ E E S
Sbjct: 800 LTKKAEHISF-SAEELRDLFRFDPNTTCLTHDLLNC-KCSGDGNTPGSVKESSEDTGRSC 857
Query: 731 NKNDQSDQEVT 741
Q+D ++
Sbjct: 858 QLGRQADNAIS 868
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 241/558 (43%), Positives = 349/558 (62%)
Query: 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
LV + +DP LV LRPHQ+EG+ F++ECV G+ G G ILAD+MGLGKTLQ I+L++
Sbjct: 283 LVDVVIDPYLVYHLRPHQKEGIIFLYECVMGM-RMNGRCGAILADEMGLGKTLQCISLIW 341
Query: 231 TLLCQG-FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTR-DDVVSGI 287
TL CQG + GKP++KK +IVTP SLV+NW+ E +KW+G R+++ + + + ++ + I
Sbjct: 342 TLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSI 401
Query: 288 D------SFTDPCSSL-QV------LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND 334
S+ SL Q+ L++ E R+ +S + + L C++ L
Sbjct: 402 FYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGT 461
Query: 335 QTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE 394
+NDL+EFFA+++F NPGILG + +R+ YE II REP+A+EEEK+LG R++E
Sbjct: 462 PI---QNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAE 518
Query: 395 LSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQ 454
L+ FILRRT +++ +LPPKI VV C+ LQ ELY ++S+ V+ + +
Sbjct: 519 LTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLEN 578
Query: 455 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAW 514
S L I ALKKLCNHP L++++IK +T C + ++ G +
Sbjct: 579 SPHLICIGALKKLCNHPCLLFNSIKEKECSST----CDKNEEKSLYKGLLSVFPADYNPL 634
Query: 515 V---ELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTT 570
+ + SGK+ VL++LL + + R +++VLVSNYTQTL++ ++C+ Y Y RLDG T
Sbjct: 635 LFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQT 694
Query: 571 SISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARV 630
IS+RQ++V+ FN + F+FLLSSKAGG GLNLIGG+ L+L+D DWNPA D QA +RV
Sbjct: 695 PISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRV 754
Query: 631 WRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRD 690
WRDGQK V IYR L+TGTIEEK+YQRQ+SK+GL + S Q S E+L++
Sbjct: 755 WRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQ---FSVEELKN 811
Query: 691 LFTFHDDVRSEIHENMHC 708
LFT H+ H+ + C
Sbjct: 812 LFTLHESSDCVTHDLLDC 829
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
Identities = 245/576 (42%), Positives = 352/576 (61%)
Query: 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
+V + +DP LV LRPHQREG+ F++ECV G+ G G ILAD+MGLGKTLQ I+L++
Sbjct: 179 IVDVVIDPHLVYHLRPHQREGIIFLYECVMGM-RVNGRCGAILADEMGLGKTLQCISLIW 237
Query: 231 TLLCQG-FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALC------ESTRDD 282
TL CQG + GKP++KK +IVTP SLV+NW E +KW+G R+++ + E T+
Sbjct: 238 TLQCQGPYGGKPVIKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDPDHKVEEFTKSP 297
Query: 283 VVSG-IDSFTDPCSSL-QV------LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND 334
+ S I S+ SL Q+ L++ E R+ +S + + L C++ L
Sbjct: 298 LYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALFSLPCEKRIILTGT 357
Query: 335 QTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE 394
+NDL+EFF++++F NPGILG + +R+ YE II R+P+A++EEK+LG R+ E
Sbjct: 358 PV---QNDLQEFFSLIDFVNPGILGSLSCYRKIYEEPIITSRQPSASQEEKELGERRACE 414
Query: 395 LSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQ 454
L+ FILRRT +++ +LPPKI VV C+ LQ ELY ++S+ V+ + +
Sbjct: 415 LTCLTGLFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQAVRFCLQGLMEN 474
Query: 455 SKILAYITALKKLCNHPKLIYDTIKSG--------NPGTTGFEDCIRFFPPEMFSGRSGS 506
S L I ALKKLCNHP L++ ++K N +ED ++ FPP+
Sbjct: 475 SSHLICIGALKKLCNHPCLLFSSVKEKECSSAWDENEERRLYEDLLKVFPPDYNPLMFAE 534
Query: 507 WTGGDGAWVELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLR 565
E SGK+ VL++LL + + R +++VLVSNYTQTL++ ++CR Y R
Sbjct: 535 ---------EESGKLQVLSKLLAVIHELRPAEKVVLVSNYTQTLNILQEVCRRHGYGCTR 585
Query: 566 LDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQ 625
LDG T IS+RQ++V+ FN ++F+FLLSSKAGG GLNLIGG+ L+L+D DWNPA D Q
Sbjct: 586 LDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQ 645
Query: 626 AAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLST 685
A +RVWRDGQK V IYR L+TGTIEEK+YQRQ+SK+ L + S Q S
Sbjct: 646 AMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTKTSDHIQ---FSV 702
Query: 686 EDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESI 721
E+L++LFT H++ H+ + C C + +S+
Sbjct: 703 EELKNLFTLHENSHCVTHDLLDC-ECTGENHPGDSL 737
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 235/563 (41%), Positives = 340/563 (60%)
Query: 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
+V + VDP + LRPHQREG+ F++ECV G+ +G G ILAD+MGLGKTLQ I+L++
Sbjct: 290 VVDVVVDPYIANNLRPHQREGIVFLYECVMGM-RVSGRFGAILADEMGLGKTLQCISLVW 348
Query: 231 TLLCQGFDG-KPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTR-DDVVSG- 286
TLL QG G KP++K+A+IVTP SLV NW+ E +KW+G R+++ + + + ++ +S
Sbjct: 349 TLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDHKVEEFISSP 408
Query: 287 -----IDSFTDPCSSL-QV------LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND 334
I S+ SL Q+ L++ E R+ +S + + L C+ L
Sbjct: 409 LYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGT 468
Query: 335 QTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE 394
+NDL+EF+A++ F NPG+LG + +R+ YE I+ REP+AT+EEK LG +R++E
Sbjct: 469 PI---QNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAE 525
Query: 395 LSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQ 454
L+ FILRRT +++ LPPK ++ C+ T LQ ELY + S+ + + +
Sbjct: 526 LTRLTGLFILRRTQEVINKFLPPKKENIIFCQPTALQLELYRKLLSSRVISSCLQGRLEN 585
Query: 455 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAW 514
S L I ALKKLCNHP L++ +K E + +T +
Sbjct: 586 SPHLICIGALKKLCNHPCLLFKALKEKCCDPKSDEHVESSLYEGLTDVFPQDYTSDTFSE 645
Query: 515 VELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSIS 573
++ SGK+ VL +LL +R+ + +R+VLVSNYTQTL++ + C+ Y Y RLDG T +S
Sbjct: 646 ID-SGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVS 704
Query: 574 KRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRD 633
+RQ++V+ FN F+FLLSSKAGG GLNL+G + L+L+D DWNPA D QA ARVWRD
Sbjct: 705 QRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRD 764
Query: 634 GQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNF-LSTEDLRDLF 692
GQK V IYR L+TGTIEEK+YQRQ+SK+ L + D S T + S E+LR+LF
Sbjct: 765 GQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAV----VDLSKTSEHIHFSVEELRNLF 820
Query: 693 TFHDDVRSEIHENMHCTRCQNYD 715
T H++ H+ + C N D
Sbjct: 821 TLHENSSCVTHDLLECDCMGNKD 843
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 235/565 (41%), Positives = 340/565 (60%)
Query: 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
+V + VDP + LRPHQREG+ F++ECV G+ +G G ILAD+MGLGKTLQ I+L++
Sbjct: 290 VVDVVVDPYIANNLRPHQREGIVFLYECVMGM-RVSGRFGAILADEMGLGKTLQCISLVW 348
Query: 231 TLLCQGFDG-KPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTR-DDVVSG- 286
TLL QG G KP++K+A+IVTP SLV NW+ E +KW+G R+++ + + + ++ +S
Sbjct: 349 TLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDHKVEEFISSP 408
Query: 287 -----IDSFTDPCSSL-QV------LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND 334
I S+ SL Q+ L++ E R+ +S + + L C+ L
Sbjct: 409 LYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGT 468
Query: 335 QTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE 394
+NDL+EF+A++ F NPG+LG + +R+ YE I+ REP+AT+EEK LG +R++E
Sbjct: 469 PI---QNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAE 525
Query: 395 LSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQ 454
L+ FILRRT +++ LPPK ++ C+ T LQ ELY + S+ + + +
Sbjct: 526 LTRLTGLFILRRTQEVINKFLPPKKENIIFCQPTALQLELYQKLLSSRVISSCLQGRLEN 585
Query: 455 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAW 514
S L I ALKKLCNHP L++ +K E + +T +
Sbjct: 586 SPHLICIGALKKLCNHPCLLFKALKEKCCDPKSDEHVESSLYEGLTDVFPQDYTSDTFSE 645
Query: 515 VELSGKMHVLARLLGHLRQ-RTDDR--IVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571
++ SGK+ VL +LL +R+ + +R +VLVSNYTQTL++ + C+ Y Y RLDG T
Sbjct: 646 ID-SGKLQVLVKLLAAIRELSSSERQVVVLVSNYTQTLNVLQETCKCYGYSYTRLDGNTP 704
Query: 572 ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
+S+RQ++V+ FN F+FLLSSKAGG GLNL+G + L+L+D DWNPA D QA ARVW
Sbjct: 705 VSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVW 764
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNF-LSTEDLRD 690
RDGQK V IYR L+TGTIEEK+YQRQ+SK+ L + D S T + S E+LR+
Sbjct: 765 RDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAV----VDLSKTSEHIHFSVEELRN 820
Query: 691 LFTFHDDVRSEIHENMHCTRCQNYD 715
LFT H++ H+ + C N D
Sbjct: 821 LFTLHENSSCVTHDLLECDCMGNKD 845
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
Identities = 251/616 (40%), Positives = 347/616 (56%)
Query: 151 PGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHG 210
PG L++ +P G +V + VDP+L + LRPHQREGV+F++ECV G+ + G G
Sbjct: 265 PGA--LIMKRPGSAPK-GKRIVDVVVDPILAKHLRPHQREGVKFLYECVMGMRSFNG-EG 320
Query: 211 CILADDMGLGKTLQSIALLYTLLCQG--FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
ILADDMGLGKTLQ+I LL+TLL Q ++ P++KKA+IV P +L++NW E +KW+G
Sbjct: 321 AILADDMGLGKTLQTITLLWTLLKQNPIYEAAPVIKKALIVCPVTLINNWRREFRKWLGN 380
Query: 269 -RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDE 327
R+ + DD + FT + ++IV YE R + D++I DE
Sbjct: 381 ERIGVFVF-----DDKRKRLTDFTMG-KAYSIMIVGYEKLRSVQEGLARGNGVDIVIADE 434
Query: 328 AHRLK---ND-----QTL--TNR---------NDLEEFFAMVNFTNPGILGDAAYFRRYY 368
HRLK N Q+L T R NDL+EFFA V+ NPG+LG F + +
Sbjct: 435 GHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVNPGVLGSFKSFIKEF 494
Query: 369 ETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLT 428
E I+ R+P ATE++ + G R+ EL +QF+LRRT +L+++LPPK V+ CK T
Sbjct: 495 EGPIVRSRQPEATEKDIEKGEARNEELRELTSQFMLRRTADILADYLPPKTEYVLFCKPT 554
Query: 429 PLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGN--PGTT 486
Q+++Y + + S + A+ L IT LKKLCN P L+ ++K N P T
Sbjct: 555 NTQAKIYQNVLASPVFQGALGNS---ESALQLITILKKLCNSPSLL--SLKDANEKPSET 609
Query: 487 GFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYT 546
+ PP + S S S K+ VL +LL +LR T +++VLVSNYT
Sbjct: 610 -IAAILSSLPPNLLRHFSPS----------CSAKIRVLDQLLHYLRTSTSEKVVLVSNYT 658
Query: 547 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNL 605
TLDL A L P+LRLDG+T KRQ LV FN P+ F FLLS+KAGG GLNL
Sbjct: 659 STLDLLANLLSSLSLPFLRLDGSTPAQKRQSLVEDFNRHPASTCFAFLLSAKAGGTGLNL 718
Query: 606 IGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ 665
IG +RLVLFD DWNPA D QA AR+ RDGQK IYR L G++EEK++QRQ++K GL
Sbjct: 719 IGASRLVLFDVDWNPATDIQAMARIHRDGQKHHCHIYRILLQGSLEEKIWQRQVTKIGLA 778
Query: 666 KVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC--QNYD--DGAESI 721
+ E DS A S ++LRDLF + + H+ + C C + Y G +
Sbjct: 779 DSVM-EHKDSVAQ----FSRDELRDLFRLDVVSKCQTHDLLACG-CGGKGYSTASGNDHT 832
Query: 722 GEGDETNSANKNDQSD 737
+ + + +D+SD
Sbjct: 833 PQQEPEGLSEDDDESD 848
>GENEDB_PFALCIPARUM|PF08_0126 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54,
putative" species:5833 "Plasmodium falciparum" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 575 (207.5 bits), Expect = 5.6e-97, Sum P(2) = 5.6e-97
Identities = 129/296 (43%), Positives = 181/296 (61%)
Query: 513 AWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSI 572
++ S K +L LL +++Q T+D++V+VSNYTQTLD LC+E Y ++RLDG +I
Sbjct: 604 SYYNFSCKFLLLHFLLKNIKQNTNDKVVIVSNYTQTLDYMEILCKENMYKFVRLDGGINI 663
Query: 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWR 632
KR K++N F S + F+FLLSSK+GGCG+NLI NRL+L DPDWNPANDKQA ARVWR
Sbjct: 664 KKRHKVINDFTH-SADIFIFLLSSKSGGCGINLISSNRLILLDPDWNPANDKQALARVWR 722
Query: 633 DGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
+GQKK +IYR TGTI+EKVYQRQ+SK+GL +I T+ S Q +S E+++ LF
Sbjct: 723 EGQKKICYIYRLFCTGTIDEKVYQRQISKDGLSNMIVTT-TNLSKDQ---MSDENVKKLF 778
Query: 693 TFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKND---QSDQEVTDIGGFAGL 749
+ + SE H+N+ C RC N + + +I + +S NKN ++D + +
Sbjct: 779 NYKMNTVSETHDNIECNRC-NLNGVSPNIHKVAHVDSINKNKSKGKNDNNNNNNNNNSNS 837
Query: 750 AGCLHKLKSSE-----------KQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGD 794
G + KS + +QL E+D+N W HH +VPD IL + D
Sbjct: 838 NGNGNNYKSDDDKNYIDGEHFAEQLEDFEEDDVNTWAHHQNIDTVPDNILIKAVKD 893
Score = 465 (168.7 bits), Expect = 5.6e-97, Sum P(2) = 5.6e-97
Identities = 147/439 (33%), Positives = 219/439 (49%)
Query: 62 RGNLVVKRQSLLPRVLSVTEGAAVCR-KPFKPPCSNGYDNGNDQLARRLCARKRFVPWGS 120
R ++ + R +LLP +LS+ + PFK P + L + L + R W +
Sbjct: 26 RTSITLVRATLLP-ILSIGKNEKTTLFHPFKNPLPGFVSDKTLYLKKTLGVKVRRTGWIN 84
Query: 121 SRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLL 180
+ +I R D T E IEE +PL+L++ E ND I VDP+L
Sbjct: 85 L--MKNSIPRRSD--ETEEQEKIEEVIKKH---EPLILYKDE---ND-----KIEVDPIL 129
Query: 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGK 240
++LR HQREGVQF+FEC+ + + I GCILADDMGLGKTLQSI +LYTLL QGF K
Sbjct: 130 AQYLREHQREGVQFVFECLMNIKDDK-ISGCILADDMGLGKTLQSITVLYTLLKQGFHKK 188
Query: 241 PMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVL 300
V++ +I+ P SL++NW EI KW+ R + + ++ ++ +VS ++ F S VL
Sbjct: 189 CAVRRCLILCPASLINNWNDEISKWIPNRCNVTCVNDNAKEKIVSKLEGFKYDIQST-VL 247
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPG--IL 358
I SYE FR+++ +F S D++ICDEAHRLKND+T T + + A G I
Sbjct: 248 ICSYECFRINN-EFLDKSSIDMIICDEAHRLKNDKTKTYTS-IYNLTAKKRLLLSGTPIQ 305
Query: 359 GDAAYFRRYYETSIICGREPTATEE----EKKLG----IERSSELSAKVNQFILRRTNAL 410
D F Y +C P ++ KK I R + + K + R L
Sbjct: 306 NDLGEF---YALISLCN--PDLFDDINLFRKKFANPILIGRDKDATEKEQEIASERLTEL 360
Query: 411 --LSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI------------SEETKQS- 455
++N + + K+ P++ L N FI ++ A+ ++ T
Sbjct: 361 SNITNKFILRRTNNLLSKVLPVKY-LINIFIKLNPIQEALYVLFLKDKKILKNDNTNNKV 419
Query: 456 KILAYITALKKLCNHPKLI 474
+L I L+K+CNHP L+
Sbjct: 420 NVLINIKKLEKICNHPLLL 438
Score = 57 (25.1 bits), Expect = 3.3e-41, Sum P(2) = 3.3e-41
Identities = 30/124 (24%), Positives = 58/124 (46%)
Query: 649 TIEEKVYQRQMSKEGL--QKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706
+++E + Q K+G + ++E D G+ ED + F DD E EN
Sbjct: 952 SMKEMKLESQDGKKGKGHKNGKREEDEDEDEFDGD---EEDNDEEDEFDDDDDEEEEEND 1008
Query: 707 HCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTP 766
+ D+ E + E E + +++++SD +V ++G +GL K+K+ K++
Sbjct: 1009 -----DDNDEEDEFVDE--EEDDRDESNESDDDVQEVGVHSGL----DKIKN--KKMENI 1055
Query: 767 LEED 770
+E D
Sbjct: 1056 IESD 1059
Score = 54 (24.1 bits), Expect = 6.7e-41, Sum P(2) = 6.7e-41
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 647 TGTIEEKV-YQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHEN 705
T T+ K+ Y+ + K QK Q + + A+Q N S ++++ D + + H+N
Sbjct: 917 TFTMSCKIEYRDDLIK---QKSEQAKMREKGASQTNGKSMKEMK--LESQDGKKGKGHKN 971
Query: 706 MHCTRCQNYD--DGAESIGEGDETNSANKNDQSDQEVTD 742
++ D DG E + DE + + +D ++E D
Sbjct: 972 GKREEDEDEDEFDGDEE--DNDEEDEFDDDDDEEEEEND 1008
>UNIPROTKB|Q8IAN4 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 575 (207.5 bits), Expect = 5.6e-97, Sum P(2) = 5.6e-97
Identities = 129/296 (43%), Positives = 181/296 (61%)
Query: 513 AWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSI 572
++ S K +L LL +++Q T+D++V+VSNYTQTLD LC+E Y ++RLDG +I
Sbjct: 604 SYYNFSCKFLLLHFLLKNIKQNTNDKVVIVSNYTQTLDYMEILCKENMYKFVRLDGGINI 663
Query: 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWR 632
KR K++N F S + F+FLLSSK+GGCG+NLI NRL+L DPDWNPANDKQA ARVWR
Sbjct: 664 KKRHKVINDFTH-SADIFIFLLSSKSGGCGINLISSNRLILLDPDWNPANDKQALARVWR 722
Query: 633 DGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
+GQKK +IYR TGTI+EKVYQRQ+SK+GL +I T+ S Q +S E+++ LF
Sbjct: 723 EGQKKICYIYRLFCTGTIDEKVYQRQISKDGLSNMIVTT-TNLSKDQ---MSDENVKKLF 778
Query: 693 TFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKND---QSDQEVTDIGGFAGL 749
+ + SE H+N+ C RC N + + +I + +S NKN ++D + +
Sbjct: 779 NYKMNTVSETHDNIECNRC-NLNGVSPNIHKVAHVDSINKNKSKGKNDNNNNNNNNNSNS 837
Query: 750 AGCLHKLKSSE-----------KQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGD 794
G + KS + +QL E+D+N W HH +VPD IL + D
Sbjct: 838 NGNGNNYKSDDDKNYIDGEHFAEQLEDFEEDDVNTWAHHQNIDTVPDNILIKAVKD 893
Score = 465 (168.7 bits), Expect = 5.6e-97, Sum P(2) = 5.6e-97
Identities = 147/439 (33%), Positives = 219/439 (49%)
Query: 62 RGNLVVKRQSLLPRVLSVTEGAAVCR-KPFKPPCSNGYDNGNDQLARRLCARKRFVPWGS 120
R ++ + R +LLP +LS+ + PFK P + L + L + R W +
Sbjct: 26 RTSITLVRATLLP-ILSIGKNEKTTLFHPFKNPLPGFVSDKTLYLKKTLGVKVRRTGWIN 84
Query: 121 SRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLL 180
+ +I R D T E IEE +PL+L++ E ND I VDP+L
Sbjct: 85 L--MKNSIPRRSD--ETEEQEKIEEVIKKH---EPLILYKDE---ND-----KIEVDPIL 129
Query: 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGK 240
++LR HQREGVQF+FEC+ + + I GCILADDMGLGKTLQSI +LYTLL QGF K
Sbjct: 130 AQYLREHQREGVQFVFECLMNIKDDK-ISGCILADDMGLGKTLQSITVLYTLLKQGFHKK 188
Query: 241 PMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVL 300
V++ +I+ P SL++NW EI KW+ R + + ++ ++ +VS ++ F S VL
Sbjct: 189 CAVRRCLILCPASLINNWNDEISKWIPNRCNVTCVNDNAKEKIVSKLEGFKYDIQST-VL 247
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPG--IL 358
I SYE FR+++ +F S D++ICDEAHRLKND+T T + + A G I
Sbjct: 248 ICSYECFRINN-EFLDKSSIDMIICDEAHRLKNDKTKTYTS-IYNLTAKKRLLLSGTPIQ 305
Query: 359 GDAAYFRRYYETSIICGREPTATEE----EKKLG----IERSSELSAKVNQFILRRTNAL 410
D F Y +C P ++ KK I R + + K + R L
Sbjct: 306 NDLGEF---YALISLCN--PDLFDDINLFRKKFANPILIGRDKDATEKEQEIASERLTEL 360
Query: 411 --LSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI------------SEETKQS- 455
++N + + K+ P++ L N FI ++ A+ ++ T
Sbjct: 361 SNITNKFILRRTNNLLSKVLPVKY-LINIFIKLNPIQEALYVLFLKDKKILKNDNTNNKV 419
Query: 456 KILAYITALKKLCNHPKLI 474
+L I L+K+CNHP L+
Sbjct: 420 NVLINIKKLEKICNHPLLL 438
Score = 57 (25.1 bits), Expect = 3.3e-41, Sum P(2) = 3.3e-41
Identities = 30/124 (24%), Positives = 58/124 (46%)
Query: 649 TIEEKVYQRQMSKEGL--QKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706
+++E + Q K+G + ++E D G+ ED + F DD E EN
Sbjct: 952 SMKEMKLESQDGKKGKGHKNGKREEDEDEDEFDGD---EEDNDEEDEFDDDDDEEEEEND 1008
Query: 707 HCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTP 766
+ D+ E + E E + +++++SD +V ++G +GL K+K+ K++
Sbjct: 1009 -----DDNDEEDEFVDE--EEDDRDESNESDDDVQEVGVHSGL----DKIKN--KKMENI 1055
Query: 767 LEED 770
+E D
Sbjct: 1056 IESD 1059
Score = 54 (24.1 bits), Expect = 6.7e-41, Sum P(2) = 6.7e-41
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 647 TGTIEEKV-YQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHEN 705
T T+ K+ Y+ + K QK Q + + A+Q N S ++++ D + + H+N
Sbjct: 917 TFTMSCKIEYRDDLIK---QKSEQAKMREKGASQTNGKSMKEMK--LESQDGKKGKGHKN 971
Query: 706 MHCTRCQNYD--DGAESIGEGDETNSANKNDQSDQEVTD 742
++ D DG E + DE + + +D ++E D
Sbjct: 972 GKREEDEDEDEFDGDEE--DNDEEDEFDDDDDEEEEEND 1008
>CGD|CAL0004359 [details] [associations]
symbol:RDH54 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0032392
"DNA geometric change" evidence=IEA] [GO:0045144 "meiotic sister
chromatid segregation" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] [GO:0030491 "heteroduplex
formation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004359 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
RefSeq:XP_717090.1 RefSeq:XP_717169.1 ProteinModelPortal:Q5A5N2
STRING:Q5A5N2 GeneID:3641231 GeneID:3641299 KEGG:cal:CaO19.12827
KEGG:cal:CaO19.5367 Uniprot:Q5A5N2
Length = 796
Score = 411 (149.7 bits), Expect = 1.2e-79, Sum P(3) = 1.2e-79
Identities = 91/203 (44%), Positives = 128/203 (63%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK+++L LL + ++IVL+SNYT+TLDL Q+ R+ + RLDG+T + R K
Sbjct: 516 SGKINILVPLLLEIAS-LGEKIVLISNYTKTLDLLEQVLRKVSLTFSRLDGSTPNNVRSK 574
Query: 578 LVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQK 636
LVN FN +P N VFLLSSK+GG G+NL+G +RL+LFD DWNPA D Q+ +R+ RDGQ
Sbjct: 575 LVNQFNTNPDIN--VFLLSSKSGGMGINLVGASRLILFDNDWNPATDLQSMSRIHRDGQL 632
Query: 637 KRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSSATQGNFLSTEDLRDLFTFH 695
K FIYR +TG I+EK++QRQ+ K L K + + T S N +DL+++F
Sbjct: 633 KPCFIYRLFTTGCIDEKIFQRQLVKNKLSSKFLDNDATSKSDVFDN----DDLKNIFEID 688
Query: 696 DDVRSEIHENMHCTRCQNYDDGA 718
S H+ + C C+ DG+
Sbjct: 689 TSTISNTHDLLECV-CEG--DGS 708
Score = 336 (123.3 bits), Expect = 1.2e-79, Sum P(3) = 1.2e-79
Identities = 74/180 (41%), Positives = 105/180 (58%)
Query: 164 PQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTL 223
P + V + +DP L + LRPHQ EGV+FM+EC+ G G HGC+LAD+MGLGKTL
Sbjct: 175 PPPKAKDYVKVNIDPHLAKVLRPHQVEGVKFMYECLMGYRGFGG-HGCLLADEMGLGKTL 233
Query: 224 QSIALLYTLLCQG-FDGK-PMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRD 281
+I ++TLL Q F K +V K ++V P +L+SNW E +KW+G + +
Sbjct: 234 MTITTIWTLLKQNPFMEKGAVVNKVLVVCPVTLISNWRQEFRKWLGANKLNVLTLNNPMS 293
Query: 282 DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN--DQTLTN 339
+ I +F + QVL+V+YE H + S + DLL+CDE HRLKN ++ L N
Sbjct: 294 NEKQDILNF-GKLNVYQVLVVNYEKLVAHFDELSAVKF-DLLVCDEGHRLKNSANKVLNN 351
Score = 179 (68.1 bits), Expect = 1.2e-79, Sum P(3) = 1.2e-79
Identities = 47/138 (34%), Positives = 73/138 (52%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEE-KKLGIERSSELSAK 398
+N+L EF +++F NPG+L + F+R + T I R+ + E KK G E S +L
Sbjct: 369 QNELVEFHTLISFLNPGVLPELKLFQRNFITPISRARDINCFDPEVKKRGEEISQQLIEL 428
Query: 399 VNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKIL 458
FILRRT A+L+N+L K ++ T LQ +L+++ N+K+ Q +
Sbjct: 429 TQSFILRRTQAILANYLTQKTDILLFVPPTSLQLKLFDYIT---NLKKF-----NQFEAF 480
Query: 459 AYITALKKLCNHPKLIYD 476
I KK+CN P L+ D
Sbjct: 481 TMINLFKKICNSPSLLAD 498
Score = 48 (22.0 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 238 DGKPMVKKAIIVTPT--SLVS--NWEAEIKKWVG 267
DGKPM K+ TP ++S +E E+ + VG
Sbjct: 101 DGKPMGKRVFTATPNLDDVISVGPYELELDEKVG 134
Score = 37 (18.1 bits), Expect = 9.2e-65, Sum P(3) = 9.2e-65
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 408 NALLSNHLPPKIIEVVCCKLTPLQSEL 434
N +L+N + I + + TP+Q+EL
Sbjct: 346 NKVLNNLIKLNIPKKIVLTGTPIQNEL 372
>SGD|S000000277 [details] [associations]
symbol:RDH54 "DNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000727 "double-strand break repair via
break-induced replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0030491 "heteroduplex formation" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0045144 "meiotic sister chromatid segregation" evidence=IMP]
[GO:0015616 "DNA translocase activity" evidence=IDA] [GO:0032392
"DNA geometric change" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000000277 GO:GO:0005524
GO:GO:0005634 EMBL:BK006936 GO:GO:0004386 EMBL:X76294
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0007131 GO:GO:0045144 InterPro:IPR018838 Pfam:PF10382
GO:GO:0000727 KO:K10877 GO:GO:0015616 GO:GO:0032392
HOGENOM:HOG000204521 GO:GO:0030491 OrthoDB:EOG4CVKG1 EMBL:Z35942
PIR:S45466 RefSeq:NP_009629.6 RefSeq:NP_009633.3
ProteinModelPortal:P38086 SMR:P38086 DIP:DIP-792N IntAct:P38086
MINT:MINT-566887 STRING:P38086 PaxDb:P38086 PeptideAtlas:P38086
EnsemblFungi:YBR073W GeneID:852365 GeneID:852369 KEGG:sce:YBR073W
KEGG:sce:YBR077C CYGD:YBR073w GeneTree:ENSGT00700000105778
OMA:AMSRIHR NextBio:971140 Genevestigator:P38086 GermOnline:YBR073W
GO:GO:0003916 Uniprot:P38086
Length = 958
Score = 434 (157.8 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 98/215 (45%), Positives = 137/215 (63%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK+ VL LL +R+ T +++V+VSNYTQTLD+ L + RLDG+ +R
Sbjct: 663 SGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDS 722
Query: 578 LVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQK 636
+V FN +P+ F FLLS+K+GG GLNL+G +RL+LFD DWNP+ D QA +R+ RDGQK
Sbjct: 723 IVTSFNRNPAI--FGFLLSAKSGGVGLNLVGASRLILFDNDWNPSVDLQAMSRIHRDGQK 780
Query: 637 KRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVI-QQEQTDSSATQGNFLSTEDLRDLFTF 694
K FIYR ++TG I+EK+ QRQ+ K L QK + E + ++ + + EDL+DLF+
Sbjct: 781 KPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFSV 840
Query: 695 HDDVRSEIHENMHCTRCQNYDDG-AESIGEGDETN 728
H D +S H+ + C+ C DG E I E ETN
Sbjct: 841 HTDTKSNTHD-LICS-C----DGLGEEI-EYPETN 868
Score = 229 (85.7 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 72/220 (32%), Positives = 108/220 (49%)
Query: 130 NRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPH-Q 188
N++D P + N E + VDPL+ Q +G V D L+ RP +
Sbjct: 268 NKIDNPIVMNKNAAAEVDVI---VDPLLGKFLRPHQREG---VKFMYD-CLMGLARPTIE 320
Query: 189 REGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG-FDGK------- 240
+ + + L N + I GC+LADDMGLGKTL SI L++TL+ Q F K
Sbjct: 321 NPDIDCTTKSLV-LENDSDISGCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSG 379
Query: 241 -PMV---KKAIIVTPTSLVSNWEAEIKKWVG-GRVQLIALCESTRDDVVS-GIDSFTDPC 294
P+ KK ++V P +L+ NW+ E KW+ R+ ++ L D+ + +F
Sbjct: 380 IPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQ 439
Query: 295 SSLQVLIVSYETFRMHSSKFSCSESC-DLLICDEAHRLKN 333
+ QVLI+ YE S + ++ D+L+CDE HRLKN
Sbjct: 440 RTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKN 479
Score = 213 (80.0 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 53/137 (38%), Positives = 73/137 (53%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKL--GIERSSELSA 397
+NDL EFF +++F NPGILG A F+R + I R+ E+ L G ERS E+
Sbjct: 505 QNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTANRYNEELLEKGEERSKEMIE 564
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+FILRRTNA+L +LPPK ++ CK Q + + + + T S
Sbjct: 565 ITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLD--FGQLTFSSS- 621
Query: 458 LAYITALKKLCNHPKLI 474
L IT LKK+CN P L+
Sbjct: 622 LGLITLLKKVCNSPGLV 638
Score = 125 (49.1 bits), Expect = 1.1e-62, Sum P(4) = 1.1e-62
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 134 LPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQ 193
+P+T +N+ ++ + P D + P + V + VDPLL +FLRPHQREGV+
Sbjct: 249 VPKTSQNSKAKKYY---PVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVK 305
Query: 194 FMFECVSGL 202
FM++C+ GL
Sbjct: 306 FMYDCLMGL 314
Score = 39 (18.8 bits), Expect = 2.1e-30, Sum P(4) = 2.1e-30
Identities = 19/77 (24%), Positives = 30/77 (38%)
Query: 768 EEDLNN-WGHHFYSMS-VPDAILQASA-GDEVTFVFTNQVDGKLVPIESKVSPKMQATEG 824
+EDL + + H + S D I G+E+ + TNQ + + + A +
Sbjct: 831 KEDLKDLFSVHTDTKSNTHDLICSCDGLGEEIEYPETNQQQNTVELRKRSTTTWTSALDL 890
Query: 825 NKNPNNHITNPKPKLDQ 841
K N TN K Q
Sbjct: 891 QKKMNEAATNDDAKKSQ 907
Score = 37 (18.1 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 88 KPFKPP 93
KPFKPP
Sbjct: 43 KPFKPP 48
>WB|WBGene00013792 [details] [associations]
symbol:Y116A8C.13 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0033554 "cellular response to stress" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0033554 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
GeneTree:ENSGT00700000105778 EMBL:AL117204 GeneID:190999
KEGG:cel:CELE_Y116A8C.13 CTD:190999 PIR:T31515
RefSeq:NP_001255913.1 ProteinModelPortal:Q9U2S8 SMR:Q9U2S8
PaxDb:Q9U2S8 EnsemblMetazoa:Y116A8C.13a UCSC:Y116A8C.13
WormBase:Y116A8C.13a HOGENOM:HOG000015986 InParanoid:Q9U2S8
OMA:KICNHPS NextBio:947616 ArrayExpress:Q9U2S8 Uniprot:Q9U2S8
Length = 833
Score = 480 (174.0 bits), Expect = 8.4e-72, Sum P(2) = 8.4e-72
Identities = 119/285 (41%), Positives = 158/285 (55%)
Query: 458 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL 517
L+ I ++L NHPKL+ D ++ + + F G GG V+
Sbjct: 464 LSLIFFARQLANHPKLLLDNLREKTEKSKAHKHSPLLLA---FDGAHMP-RGG----VKE 515
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK+ L ++ R + V+VSNY +TLD+ QLC + LRLDG T + RQK
Sbjct: 516 SGKLTALVDMIKCFRL-LQECTVIVSNYIETLDMIQQLCEYLNFKVLRLDGKTQVPDRQK 574
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
LV FND +FLLS+KAGG GLNLIG +RLVLFD DWNPAND+QA AR+WRDGQ +
Sbjct: 575 LVRTFNDHRDPSNIFLLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQAMARIWRDGQVR 634
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQ-EQTDSSATQGNFLSTEDLRDLFTFHD 696
IYR ++TGTIEEK+ QRQ+ K GL VI E D+ AT + EDL+D+FTF
Sbjct: 635 PCHIYRLITTGTIEEKMLQRQIKKTGLGCVIDAIEVGDTIAT----FTDEDLKDIFTFTG 690
Query: 697 DVRS-EIHE--NMHCTRCQNYDDGAESIGEGDET--NSANKNDQS 736
H+ C C ++ + +GD+ N A K D+S
Sbjct: 691 SATECNTHDLCECPCDGCGMLENEMDEEDDGDDVVENDAEKIDKS 735
Score = 322 (118.4 bits), Expect = 8.4e-72, Sum P(2) = 8.4e-72
Identities = 93/310 (30%), Positives = 155/310 (50%)
Query: 148 TLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVS-GLLNAA 206
T+ + P +L E+ D +TVD R LRPHQ+ G+QF+F+ + G
Sbjct: 172 TIQEKIPPFIL--NEQDILDRKTTSAVTVDTRFARHLRPHQKSGIQFIFDRLRRGSGKNG 229
Query: 207 GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
G G ILADDMGLGK+LQ++A + LL + + +I+ P+SLV+NW+AE KW
Sbjct: 230 GGGGAILADDMGLGKSLQTMAATWALLKGSKTAQQLANSCLIIVPSSLVNNWKAEFDKW- 288
Query: 267 GGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICD 326
++ A+ T +D+ + + + L++SY+ + H K D+++CD
Sbjct: 289 WRLMRFPAVIALTANDITT----YQSTIKLMPYLVISYDLAQRHVEKLKIIRF-DVMVCD 343
Query: 327 EAHRLKN-D----QTLTN--------------RNDLEEFFAMVNFTNPGILGDAAYFRRY 367
E H+LKN D +TL + +ND EEF+++++F P + G FR+
Sbjct: 344 EGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEFYSLLDFVRPSVFGSIVEFRK- 402
Query: 368 YETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLS-NHLPPKIIEVVCCK 426
+C P E+ +EL +++ +LRRT A + HLP K ++ C
Sbjct: 403 -----MCSDRP-----------EQLNEL---IDECMLRRTAADVDLKHLPEKHEYILFCA 443
Query: 427 LTPLQSELYN 436
+P+Q +++
Sbjct: 444 ASPIQKHVHS 453
Score = 37 (18.1 bits), Expect = 8.3e-42, Sum P(2) = 8.3e-42
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 378 PTATEEEKKLGIERSSELSAKVNQFILRRTNAL 410
P E G SS + K+ FIL + L
Sbjct: 156 PLIGSESSSSGGSSSSTIQEKIPPFILNEQDIL 188
>DICTYBASE|DDB_G0285117 [details] [associations]
symbol:rad54b "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0285117 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000074 KO:K10877 RefSeq:XP_639875.1 STRING:Q54NP1
EnsemblProtists:DDB0232413 GeneID:8624946 KEGG:ddi:DDB_G0285117
InParanoid:Q54NP1 OMA:PINKSRE ProtClustDB:CLSZ2735674
Uniprot:Q54NP1
Length = 989
Score = 696 (250.1 bits), Expect = 1.8e-68, P = 1.8e-68
Identities = 165/434 (38%), Positives = 247/434 (56%)
Query: 300 LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILG 359
L+V E R+ +S ++S + CD L +N+L EF++M++F NP LG
Sbjct: 415 LMVCDEAHRLKNSNAKTTQSIMSVRCDRKILLTGTPI---QNNLVEFYSMMDFANPNCLG 471
Query: 360 DAAYFRRYYETSIICGRE-PTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK 418
A F++ + I RE P +T + GI +S +LS V FI+RR + +L +LPPK
Sbjct: 472 SLADFKKSFIIPINKSRESPNSTSTSE--GIRKSIQLSKLVKPFIIRRKSNILEKYLPPK 529
Query: 419 IIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYD 476
++++ CKL+ LQ ELY ++S +VK +S + L+ IT LKKLCN P L+
Sbjct: 530 RVQIIFCKLSSLQIELYKSILNSNSVKSLLSGGGSRGSATSLSTITLLKKLCNSPSLLLL 589
Query: 477 TIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTD 536
K G + ++ + + SGK+ + L+ L+ +
Sbjct: 590 NNKQDEGGEQQQTEIQNILKKHNYTLEN--YQEIQEQQDNESGKLLFVESLIKQLKPM-N 646
Query: 537 DRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKN-------- 588
+++VLVSN+T+TLD+F +LC+ LRLDG RQ LV+ FN ++N
Sbjct: 647 EKLVLVSNFTKTLDVFERLCKRLSIDTLRLDGDVKADSRQALVDKFNSSTQNVSSSKSSS 706
Query: 589 -EF-VFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLS 646
++ VFLLS+KAGG G+NLIGGN LVL+DPDWNPA D QA R+WR+GQ K VFIYR S
Sbjct: 707 SQYQVFLLSAKAGGVGINLIGGNHLVLYDPDWNPAIDIQAMERIWREGQTKPVFIYRLFS 766
Query: 647 TGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706
TGTIEEK+YQRQ+ KE + I ++ + + GNF S EDL+D+F+++++ S+ H+ +
Sbjct: 767 TGTIEEKIYQRQLMKESISNSIVDKKFNDNG--GNF-SLEDLKDIFSYNENTNSDTHDLL 823
Query: 707 HCTRCQNYDDGAES 720
C C N + A +
Sbjct: 824 QCN-CGNSNSNAST 836
Score = 521 (188.5 bits), Expect = 5.6e-47, P = 5.6e-47
Identities = 124/321 (38%), Positives = 180/321 (56%)
Query: 150 PPGVDPLVLWQPEEPQND--GGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAG 207
P D L+ + P Q D G +V + +DP + R LRPHQR GV+F+++CV+G N G
Sbjct: 243 PNSKDALIFYSPPPSQLDEEGNKVVHVVLDPYIGRHLRPHQRRGVKFLYDCVTGNSNDNG 302
Query: 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVG 267
G ILAD MGLGKTLQ++ALL+TLL Q GKP +KKAIIVTP++LV+NW++EI+KW G
Sbjct: 303 YSGAILADQMGLGKTLQTLALLWTLLKQSPYGKPTIKKAIIVTPSTLVNNWKSEIQKWFG 362
Query: 268 -GRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICD 326
GR+ L +S + + ++ F S VLI+SYE R+ S + + SC L++CD
Sbjct: 363 NGRLIASTLTDSLTKETKANLNDFNT--SIKPVLIISYEQCRIFSKELE-TMSCGLMVCD 419
Query: 327 EAHRLKNDQTLTNRNDLE-EFFAMVNFTNPGILGDAAYFRRY--------------YETS 371
EAHRLKN T ++ + + T I + F ++ S
Sbjct: 420 EAHRLKNSNAKTTQSIMSVRCDRKILLTGTPIQNNLVEFYSMMDFANPNCLGSLADFKKS 479
Query: 372 IICG---REPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLT 428
I + GI +S +LS V FI+RR + +L +LPPK ++++ CKL+
Sbjct: 480 FIIPINKSRESPNSTSTSEGIRKSIQLSKLVKPFIIRRKSNILEKYLPPKRVQIIFCKLS 539
Query: 429 PLQSELYNHFIHSKNVKRAIS 449
LQ ELY ++S +VK +S
Sbjct: 540 SLQIELYKSILNSNSVKSLLS 560
>POMBASE|SPAC22F3.03c [details] [associations]
symbol:rdh54 "ATP-dependent DNA helicase Rdh54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC22F3.03c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0004003
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007131 KO:K10877 EMBL:AY293737 PIR:S62418
PIR:T38188 RefSeq:NP_593038.2 ProteinModelPortal:Q09772
IntAct:Q09772 STRING:Q09772 EnsemblFungi:SPAC22F3.03c.1
GeneID:2541798 KEGG:spo:SPAC22F3.03c OMA:NTENTRT OrthoDB:EOG4CVKG1
NextBio:20802886 Uniprot:Q09772
Length = 811
Score = 382 (139.5 bits), Expect = 2.9e-65, Sum P(2) = 2.9e-65
Identities = 112/343 (32%), Positives = 167/343 (48%)
Query: 150 PPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIH 209
P + LV+ +P+ D V + +DP L + L HQREGV F+++C+ G+ G +
Sbjct: 173 PTVLGALVMSRPKTW--DPRTHVDVVIDPFLSKHLYSHQREGVSFLYDCLLGMEGKCG-Y 229
Query: 210 GCILADDMGLGKTLQSIALLYTLLCQGF--DGKPMVKKAIIVTPTSLVSNWEAEIKKWVG 267
ILAD+MGLGKTLQ+I +++TLL Q + + + A++V P +L+ NWE E W+G
Sbjct: 230 SAILADEMGLGKTLQTITVVWTLLKQSYYANRSSTINNAMVVAPVTLLKNWENEFYNWLG 289
Query: 268 G-RVQL-IALCESTRDDVVSG------IDSFTDPCSSLQV--------LIVSYETFRMHS 311
R+ + IA C + S I + C+ L+ L++ E R+ S
Sbjct: 290 HERIHVYIARCAEDFQEFTSNKTYSIIITGYETVCTYLRNYGCGIDIDLLICDEAHRLKS 349
Query: 312 SKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETS 371
S L RL T +NDL E+F+MVNF PG LG F+ YE
Sbjct: 350 --MSSQTWITLNKLKTRKRLLLTGTPL-QNDLSEYFSMVNFIIPGSLGTPNSFKAQYERP 406
Query: 372 IICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQ 431
I+ R A+ + LG R L + F LRR +L+ HLPP+ V+ K T Q
Sbjct: 407 ILRSRSMNASSRDISLGAARLQRLFEFTSNFTLRRKANILAKHLPPRTDIVLFIKPTHQQ 466
Query: 432 SELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLI 474
+Y H + K ++ ++ KIL T L K+CN L+
Sbjct: 467 ENVYGHVLDG--FKSSVDQKGYYLKIL---TRLSKICNSTILL 504
Score = 366 (133.9 bits), Expect = 2.9e-65, Sum P(2) = 2.9e-65
Identities = 79/179 (44%), Positives = 114/179 (63%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
S K+ +LA LL QR + V+VS Y +TL+L + +L G+T S+R
Sbjct: 531 SSKLQILAALLKSF-QRGCQKAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERDL 589
Query: 578 LVNHFNDPSKNEF-VFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQK 636
+V++FN S EF V LLSSKAGGCGLNL G RL++++P WNPA D QA +R++R GQK
Sbjct: 590 IVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSGQK 649
Query: 637 KRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQG-NFLSTEDLRDLFTF 694
+ V IY FLS+G ++E+++ RQ +K+GL DS A+Q NF + ED++ LF++
Sbjct: 650 RPVCIYTFLSSGMLDERIFIRQNTKQGLSSSF----IDSDASQKKNFFTGEDIKTLFSY 704
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 418 (152.2 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 112/340 (32%), Positives = 174/340 (51%)
Query: 376 REPTATEEEKKLGIERS-SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSEL 434
R A ++KKL +E E + N+ R + + L K +V L+ +Q ++
Sbjct: 336 RRTKADVQQKKLKLEEGFEEEEDQENKCPNAREGVEMPS-LTRKNDLIVWTYLSSVQEDI 394
Query: 435 YNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRF 494
YN FI +K ++ T +S LA +T LKKLC+HP+L+ G D
Sbjct: 395 YNKFISLDQIKELLT--TTRSP-LAELTVLKKLCDHPRLLSQRAVI-QLGLERGSDSELV 450
Query: 495 FPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQ 554
E S S D +E SGK+ + L+ LR+ R ++ S + LD+ +
Sbjct: 451 HSDESESAVSQIDNISDHTLIEESGKLQFVVSLMECLREE-GHRTLIFSQSRKMLDIMER 509
Query: 555 LCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL 613
+ R R + LRLDGT T +++R+K ++ F K +FLL+++ GG G+ L G NR+V+
Sbjct: 510 VLRNRNFRLLRLDGTVTQLAEREKRISLFQT-DKRYTIFLLTTQVGGVGITLTGANRVVI 568
Query: 614 FDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQT 673
FDP WNPA D QA R +R GQ + V IYR ++ GT+EEK+Y+RQ+ K+ L I+Q
Sbjct: 569 FDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSL---IRQTTG 625
Query: 674 DSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQN 713
D + S ++LR+LF D S + + Q+
Sbjct: 626 DKK-NPFRYFSKQELRELFKLEDTRSSSTQQQLQAMHAQS 664
Score = 247 (92.0 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 83/249 (33%), Positives = 120/249 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L HQ+EGV F++ L G G ILADDMGLGKT+Q I+ L + +D + +
Sbjct: 105 LYDHQKEGVAFLYS-----LYRDGRKGGILADDMGLGKTIQVISFLSGM----YDAE-LA 154
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGG-RV-QLIALCESTRDDVVSGIDSFTDPC-SSLQVL 300
++V PTSL+ NW E KW G RV + ++ R+ + I ++ Q+L
Sbjct: 155 NHTLLVMPTSLIKNWVREFAKWTPGMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQML 214
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLT----------NR---------N 341
I +YE + + D +I DEAH++K T T NR N
Sbjct: 215 INNYEQLGSNGHR---EFKWDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQN 271
Query: 342 DLEEFFAMVNFTNPG-ILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVN 400
+L E +A+ +F G +LG + F+ YE I RE AT EK LG+ S L+ +
Sbjct: 272 NLREMWALFDFACQGSLLGTSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIK 331
Query: 401 QFILRRTNA 409
+ LRRT A
Sbjct: 332 PYFLRRTKA 340
Score = 52 (23.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 40/191 (20%), Positives = 81/191 (42%)
Query: 646 STGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHEN 705
+ GT+ +++ + +EG + + + T ++ N +E+ + D +SE +E
Sbjct: 1229 ANGTLADELVE----EEGEYR--EGKNTSDKVSESNETHSEEFAEEEKPSGD-KSESYEI 1281
Query: 706 MHCTRCQNYDDGAESIGEGDETNS--ANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQL 763
+ + + D +E GD T S +++ ++D+ V + +G L + E ++
Sbjct: 1282 SEAS--ETHTDNSEEEIIGDHTGSYKISESSEADESVVEEEEPSG-----ETLNTEESEM 1334
Query: 764 GTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFT-NQVDGKLVPIESKVSPKMQ-- 820
G E G A+L+++ E+ T +Q K VP+E+ V P
Sbjct: 1335 GEEEESAELIAGQEQEEWH--SAVLESTGDVELDSNETMDQCAPKTVPVETHVLPVSSTN 1392
Query: 821 -ATEGNKNPNN 830
A E + N N
Sbjct: 1393 TAAEASDNKYN 1403
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 417 (151.9 bits), Expect = 2.8e-54, Sum P(2) = 2.8e-54
Identities = 102/281 (36%), Positives = 156/281 (55%)
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSG 481
++ +L PLQ E+Y F+ ++K + E T+ LA + LKKLC+HP+L+ + ++
Sbjct: 346 IIWIRLVPLQEEIYRKFVSLDHIKELLME-TRSP--LAELGVLKKLCDHPRLL--SARAC 400
Query: 482 NPGTTGFEDCIRFFPPEMFSGRSGSWTG-----GDGAWVELSGKMHVLARLLGHLRQRTD 536
G +RF + G S D +E SGKM L LL LR
Sbjct: 401 QLLNLG---AVRFSVQDEIEGEDSSGVDHIDQVSDETLMEESGKMTFLMDLLKRLRDEGH 457
Query: 537 DRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLS 595
+V S Q L++ +L + R + LR+DGT T + +R+K ++ F +K+ VFLL+
Sbjct: 458 QTLVF-SQSRQILNILERLLKNRHFKILRIDGTITHLVEREKRISLFQQ-NKDYSVFLLT 515
Query: 596 SKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVY 655
++ GG GL L +R+V+FDP WNPA D QA RV+R GQK+ V +YR ++ GT+EEK+Y
Sbjct: 516 TQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 575
Query: 656 QRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHD 696
+RQ+ K+ L I+Q D + S ++LR+LFT D
Sbjct: 576 RRQVFKDSL---IRQTTGDKK-NPFRYFSKQELRELFTIED 612
Score = 232 (86.7 bits), Expect = 2.8e-54, Sum P(2) = 2.8e-54
Identities = 83/247 (33%), Positives = 122/247 (49%)
Query: 187 HQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKA 246
+Q+EGV F++ L G G ILADDMGLGKT+Q IA L + FD +V
Sbjct: 77 YQKEGVAFLYS-----LYRDGRRGGILADDMGLGKTVQIIAFLSGM----FDAS-LVNHV 126
Query: 247 IIVTPTSLVSNWEAEIKKWVGG-RVQLI---ALCESTRDDVVSGIDSFTDPC-SSLQVLI 301
+++ PTSL+S W E KW G RV+ + E TR+ +S I ++ Q+LI
Sbjct: 127 LLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRN--LSRIQQRNGVIITTYQMLI 184
Query: 302 VSYETFR-MHSSKFSCSESCDLLICDEAHRLKNDQTLT----------NR---------N 341
+++ ++ +F D +I DEAH++K T + NR N
Sbjct: 185 NNWQQLSSLNGREFVW----DYVILDEAHKIKTSSTKSAICARAIPARNRILLTGTPIQN 240
Query: 342 DLEEFFAMVNFTNPG-ILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVN 400
+L+E +++ +F G +LG F+ YE I RE AT EK LG + S L A +
Sbjct: 241 NLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIK 300
Query: 401 QFILRRT 407
+ LRRT
Sbjct: 301 PYFLRRT 307
Score = 44 (20.5 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQ 679
+++VF + T ++K R SK+ L+++ E +SATQ
Sbjct: 576 RRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFTIEDFQNSATQ 619
Score = 42 (19.8 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 266 VGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296
V R+Q I E+ + G D FTD C+S
Sbjct: 34 VMSRIQKIQ--EALEELAEHGEDEFTDVCNS 62
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 398 (145.2 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 84/199 (42%), Positives = 123/199 (61%)
Query: 497 PEMFSGRSGSWTGGD--GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQ 554
P+ F G G D G W + SGKM V+ LL + + R++L S Q LD+
Sbjct: 805 PKNFKGIPGEELEEDQFGYW-KRSGKMIVVESLL-KIWHKQGQRVLLFSQSRQMLDILEV 862
Query: 555 LCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLF 614
R ++Y YL++DGTT+I+ RQ L+ +N+ + + FVFLL+++ GG G+NL G NR++++
Sbjct: 863 FLRAQKYSYLKMDGTTTIASRQPLITRYNEDA-SIFVFLLTTRVGGLGVNLTGANRVIIY 921
Query: 615 DPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTD 674
DPDWNP+ D QA R WR GQKK+V +YR L+ GTIEEK+Y RQ+ K+ L + ++
Sbjct: 922 DPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPK- 980
Query: 675 SSATQGNFLSTEDLRDLFT 693
Q F + DL +LFT
Sbjct: 981 ----QRRFFKSNDLYELFT 995
Score = 187 (70.9 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 50/155 (32%), Positives = 81/155 (52%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E +++ +F PG LG F + I G A+ + K + + L +
Sbjct: 668 QNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 727
Query: 400 NQFILRR--TNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
N ++LRR ++ +S LP K +V+ C+LT Q ++Y +FI SK V R ++ E + I
Sbjct: 728 NPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGEMQ---I 784
Query: 458 LAYITALKKLCNHPKLIYDTIKS--GNPGTTGFED 490
+ + AL+K+CNHP L K+ G PG ED
Sbjct: 785 FSGLVALRKICNHPDLFSGGPKNFKGIPGEELEED 819
Score = 111 (44.1 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 47/163 (28%), Positives = 73/163 (44%)
Query: 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL----YTLL-C 234
L + L +Q+ GV++++E L+ G IL D+MGLGKT+Q IA L Y+ +
Sbjct: 492 LFKKLFKYQQTGVRWLWE-----LHCQQAGG-ILGDEMGLGKTIQIIAFLAGLSYSKIRT 545
Query: 235 QG----FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290
+G F+G + IIV PT+++ W E W +A+ T
Sbjct: 546 RGSNYRFEG---LGPTIIVCPTTVMHQWVKEFHTW--WPPFRVAILHETGSFTHKKEKLV 600
Query: 291 TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
D +LI SY R+ S +I DE H+++N
Sbjct: 601 RDIAHCHGILITSYSYIRLMQDDIS-RHDWHYVILDEGHKIRN 642
Score = 51 (23.0 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 655 YQRQMSKE-GLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFH 695
+Q Q+ + G ++++Q+ + SA+Q + + E LR+L TFH
Sbjct: 1425 FQAQVDGQAGTREILQEFEPRLSASQ-SCVFRELLRNLCTFH 1465
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 358 (131.1 bits), Expect = 6.2e-53, Sum P(3) = 6.2e-53
Identities = 94/251 (37%), Positives = 136/251 (54%)
Query: 451 ETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP--PEMFSGRSGSWT 508
ET ++ L+Y+T L+K+ NH L+ S T C + F P+ F +S
Sbjct: 450 ETVKTLYLSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPD-FVQKSKDAA 508
Query: 509 GGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDG 568
+ + SGKM VL +LL H R+ D +++L S T+ LD+ Q C Y RLDG
Sbjct: 509 FETLSDPKYSGKMKVLQQLLNHCRKNRD-KVLLFSFSTKLLDVLQQYCMASGLDYRRLDG 567
Query: 569 TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA 628
+T +R K+V FN +++ + L+S+ AGG GLN +G N +VLFDP WNPAND QA
Sbjct: 568 STKSEERLKIVKEFNS-TQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAID 626
Query: 629 RVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDS---SATQGNFLST 685
R +R GQ + V + R +S GT+EE +Y RQ+ K+ L V+ + A QG S
Sbjct: 627 RAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYFEAVQG---SK 683
Query: 686 EDLRDLFTFHD 696
E +LF H+
Sbjct: 684 EHQGELFGIHN 694
Score = 190 (71.9 bits), Expect = 6.2e-53, Sum P(3) = 6.2e-53
Identities = 55/215 (25%), Positives = 107/215 (49%)
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRV----------QLIALCESTRDDVVSGIDSFT-- 291
K +IV P S++ NW+ E+ W RV +LI + + + ++ ++
Sbjct: 209 KMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLC 268
Query: 292 -DPCSSLQ-VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAM 349
D +SL+ ++ E R+ + K +E L C+ R+ T+ +N+++E + +
Sbjct: 269 LDELNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNV--RIGLTGTIL-QNNMKELWCV 325
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNA 409
+++ PG+LG YF++ + + G+ TAT+ E G + L+ K++ + LRRT
Sbjct: 326 MDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKT 385
Query: 410 LLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV 444
L+ + LP K +V C LT Q +Y + +++V
Sbjct: 386 LIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 420
Score = 125 (49.1 bits), Expect = 6.2e-53, Sum P(3) = 6.2e-53
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 166 NDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQS 225
+D G+ +P T++ R+LR +QREG +F++ G G GCIL DDMGLGKT+Q
Sbjct: 120 SDNGDSIPYTIN----RYLRDYQREGTRFLY----GHYIHGG--GCILGDDMGLGKTVQV 169
Query: 226 IALLYTLL 233
I+ L +L
Sbjct: 170 ISFLAAVL 177
Score = 42 (19.8 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKV 667
R GQK+R Y+ S G + +Y ++ LQKV
Sbjct: 433 RSGQKRRNCCYKTNSHGETVKTLYLSYLTV--LQKV 466
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 391 (142.7 bits), Expect = 6.3e-53, Sum P(4) = 6.3e-53
Identities = 79/182 (43%), Positives = 117/182 (64%)
Query: 512 GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571
G W + SGKM V+ LL + + R++L S Q LD+ R ++Y YL++DGTT+
Sbjct: 828 GYW-KRSGKMIVVESLL-KIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTA 885
Query: 572 ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
I+ RQ L+ +N+ + + FVFLL+++ GG G+NL G NR++++DPDWNP+ D QA R W
Sbjct: 886 IASRQPLITRYNEDT-SIFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAW 944
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDL 691
R GQKK+V +YR L+ GTIEEK+Y RQ+ K+ L + ++ Q F + DL +L
Sbjct: 945 RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPK-----QRRFFKSNDLYEL 999
Query: 692 FT 693
FT
Sbjct: 1000 FT 1001
Score = 179 (68.1 bits), Expect = 6.3e-53, Sum P(4) = 6.3e-53
Identities = 43/136 (31%), Positives = 74/136 (54%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E +++ +F PG LG F + I G A+ + K + + L +
Sbjct: 675 QNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 734
Query: 400 NQFILRR--TNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
N ++LRR ++ +S LP K +V+ C+LT Q ++Y +FI SK V R ++ + + I
Sbjct: 735 NPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTEEQHKVYQNFIDSKEVYRILNGDMQ---I 791
Query: 458 LAYITALKKLCNHPKL 473
+ + AL+K+CNHP L
Sbjct: 792 FSGLVALRKICNHPDL 807
Score = 115 (45.5 bits), Expect = 6.3e-53, Sum P(4) = 6.3e-53
Identities = 46/160 (28%), Positives = 72/160 (45%)
Query: 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL----YTLL-C 234
L R L +Q+ GV++++E L+ G IL D+MGLGKT+Q IA L Y+ +
Sbjct: 499 LFRKLFKYQQTGVRWLWE-----LHCQQAGG-ILGDEMGLGKTIQIIAFLAGLSYSKIRT 552
Query: 235 QGFDGK-PMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDP 293
+G + + + IIV PT+++ W E W +A+ T D
Sbjct: 553 RGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTW--WPPFRVAILHETGSYTQKKEKLIRDI 610
Query: 294 CSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
+LI SY R+ S +I DE H+++N
Sbjct: 611 AHCHGILITSYSYIRLMQDDIS-RHDWHYVILDEGHKIRN 649
Score = 49 (22.3 bits), Expect = 6.3e-53, Sum P(4) = 6.3e-53
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 858 SLENSAKFSLSASSQPKSMRTSLKGAIKPKLSFGNQLPLKRFSPD-NVEHDD 908
S E SA F+ S+ ++ + LK + P + +P+ R PD N +D
Sbjct: 1010 STETSAIFA-GTGSEVQTPKLHLKRKLPPAFGADHNIPICRKFPDSNASTND 1060
Score = 46 (21.3 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 665 QKVIQQEQTDSSATQGNFLSTEDLRDLFTFH 695
Q+++Q+ ++ SA+Q + + + LR+L TFH
Sbjct: 1441 QEILQEFESKLSASQ-SCVFRQLLRNLCTFH 1470
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 358 (131.1 bits), Expect = 7.8e-53, Sum P(2) = 7.8e-53
Identities = 80/200 (40%), Positives = 120/200 (60%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D + SGKM +L +LL L+++ R+++ S ++ LD+
Sbjct: 467 PYLFEGAEPGPPYTTDEHLIFNSGKMIILDKLLKRLKEK-GSRVLIFSQMSRLLDILEDY 525
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R + Y R+DG+TS +R + ++ +N P+ +FVFLL+++AGG G+NL+ + ++LFD
Sbjct: 526 CYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFD 585
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQEQTD 674
DWNP D QA R R GQKK+V +YRF++ IEEKV +R K L Q VIQQ
Sbjct: 586 SDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQQGTGK 645
Query: 675 SSATQGNFLSTEDLRDLFTF 694
+A+ GN S +DL D+ F
Sbjct: 646 KTASLGN--SKDDLLDMIQF 663
Score = 279 (103.3 bits), Expect = 7.8e-53, Sum P(2) = 7.8e-53
Identities = 97/327 (29%), Positives = 160/327 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q +G+ ++ L+ + G ILAD+MGLGKTLQ+I+ L Y + +G P
Sbjct: 184 LRDYQVQGLNWLIS-----LHENKLSG-ILADEMGLGKTLQTISFLGYLRYVKQIEG-PF 236
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC--ESTRDDVVSGIDSFTDPCSSLQVL 300
+I+ P S + NW E KW V ++ L + TR D+V I + + VL
Sbjct: 237 ----LIIVPKSTLDNWRREFLKWTPN-VNVLVLHGDKDTRADIVRNI--ILE--ARFDVL 287
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLT----------NR---------N 341
I SYE + + ++ DEAHR+KN+Q+ NR N
Sbjct: 288 ITSYEMVIREKNALK-RLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQN 346
Query: 342 DLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
+L E +A++NF P I GD+ F ++E + +E+++++ I+ +L + +N
Sbjct: 347 NLHELWALLNFLLPDIFGDSELFDEWFEQN--------NSEQDQEIVIQ---QLHSVLNP 395
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK--NVKRAISEETKQSKILA 459
F+LRR A + L PKI V +T +Q + Y + V A+ + ++++L
Sbjct: 396 FLLRRVKADVEKSLLPKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLN 455
Query: 460 YITALKKLCNHPKLIYDTIKSGNPGTT 486
+ L+K CNHP L ++ + G P TT
Sbjct: 456 IVMQLRKCCNHPYL-FEGAEPGPPYTT 481
Score = 37 (18.1 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 112 RKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENF 147
R+ F+ W + VLV ++ V N ++E F
Sbjct: 249 RREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARF 284
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 392 (143.0 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 80/182 (43%), Positives = 117/182 (64%)
Query: 512 GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571
G W + SGKM V+ LL + + R++L S Q LD+ R ++Y YL++DGTT+
Sbjct: 833 GYW-KRSGKMIVVESLL-KIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTT 890
Query: 572 ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
I+ RQ L+ +N+ + + FVFLL+++ GG G+NL G NR+V++DPDWNP+ D QA R W
Sbjct: 891 IASRQPLITRYNEDT-SIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAW 949
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDL 691
R GQKK+V +YR L+ GTIEEK+Y RQ+ K+ L + ++ Q F + DL +L
Sbjct: 950 RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPK-----QRRFFKSNDLYEL 1004
Query: 692 FT 693
FT
Sbjct: 1005 FT 1006
Score = 180 (68.4 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 43/136 (31%), Positives = 74/136 (54%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E +++ +F PG LG F + I G A+ + K + + L +
Sbjct: 679 QNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 738
Query: 400 NQFILRR--TNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
N ++LRR ++ +S LP K +V+ C+LT Q ++Y +F+ SK V R ++ E + I
Sbjct: 739 NPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQ---I 795
Query: 458 LAYITALKKLCNHPKL 473
+ + AL+K+CNHP L
Sbjct: 796 FSGLIALRKICNHPDL 811
Score = 111 (44.1 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 47/167 (28%), Positives = 75/167 (44%)
Query: 176 VDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL----YT 231
V L + L +Q+ GV++++E L+ G IL D+MGLGKT+Q IA L Y+
Sbjct: 499 VPGFLFKKLFKYQQTGVRWLWE-----LHCQQAGG-ILGDEMGLGKTIQIIAFLAGLSYS 552
Query: 232 LL-CQG----FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSG 286
+ +G F+G + +IV PT+++ W E W +A+ T
Sbjct: 553 KIRTRGSNYRFEG---LGPTVIVCPTTVMHQWVKEFHTW--WPPFRVAILHETGSYTHKK 607
Query: 287 IDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
D +LI SY R+ S + +I DE H+++N
Sbjct: 608 EKLIRDVAHCHGILITSYSYIRLMQDDISRYD-WHYVILDEGHKIRN 653
Score = 45 (20.9 bits), Expect = 3.5e-15, Sum P(3) = 3.5e-15
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 665 QKVIQQEQTDSSATQGNFLSTEDLRDLFTFH 695
++++Q+ ++ SA+Q + + E LR+L TFH
Sbjct: 1448 REILQEFESKLSASQ-SCVFRELLRNLCTFH 1477
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 365 (133.5 bits), Expect = 4.7e-52, Sum P(3) = 4.7e-52
Identities = 94/251 (37%), Positives = 138/251 (54%)
Query: 451 ETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP--PEMFSGRSGSWT 508
+T ++ L+Y+T L+K+ NH L+ S + T C R F P+ F +S
Sbjct: 437 DTVRTLCLSYLTVLQKVANHVALLQAASTSKHQETVIKRICDRVFSRFPD-FVQKSKDAA 495
Query: 509 GGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDG 568
+ + SGKM VL +LL H R++ D +++L S T+ LD+ Q C Y RLDG
Sbjct: 496 FETLSDPKYSGKMKVLQQLLNHFRKQRD-KVLLFSFSTKLLDVLQQYCMASGLDYRRLDG 554
Query: 569 TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA 628
+T +R K+V FN S++ + L+S+ AGG GLN +G N ++LFDP WNPAND QA
Sbjct: 555 STKSEERLKIVKEFNS-SQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVD 613
Query: 629 RVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDS---SATQGNFLST 685
R +R GQ + V + R +S GT+EE +Y RQ+ K+ L V+ + A QG S
Sbjct: 614 RAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYFEAVQG---SK 670
Query: 686 EDLRDLFTFHD 696
E +LF H+
Sbjct: 671 EHRGELFGVHN 681
Score = 173 (66.0 bits), Expect = 4.7e-52, Sum P(3) = 4.7e-52
Identities = 53/215 (24%), Positives = 105/215 (48%)
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRV----------QLIALCESTRDDVVSGIDSFT-- 291
K +IV P S++ NW+ E+ W RV +L+ L + + ++ ++
Sbjct: 196 KMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGSKKDNELLRLKQRKCEIALTTYETLRLC 255
Query: 292 -DPCSSLQ-VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAM 349
+ +SL+ I+ E R+ + K +E + C R+ T+ +N+++E + +
Sbjct: 256 LEELNSLEWSAIIVDEAHRIKNPKARVTEVMKAVKCKV--RIGLTGTVL-QNNMKELWCV 312
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNA 409
+++ PG+LG +F++ + + G+ TAT+ E G + L+ K++ + LRRT
Sbjct: 313 MDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKT 372
Query: 410 LLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV 444
L+ LP K +V C LT Q +Y + +++V
Sbjct: 373 LIKGQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 407
Score = 125 (49.1 bits), Expect = 4.7e-52, Sum P(3) = 4.7e-52
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 166 NDGGNLVPITVDPLLVRFLRPHQREGVQFMFE-CVSGLLNAAGIHGCILADDMGLGKTLQ 224
++ G+ +P T++ R+LR +QREG QF++ + G GCIL DDMGLGKT+Q
Sbjct: 108 SEDGDSIPYTIN----RYLRDYQREGAQFLYRHYIEG-------RGCILGDDMGLGKTIQ 156
Query: 225 SIALLYTLL 233
I+ L +L
Sbjct: 157 VISFLAAVL 165
>UNIPROTKB|F1NYG8 [details] [associations]
symbol:F1NYG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 EMBL:AADN02067869 EMBL:AADN02067866
EMBL:AADN02067867 EMBL:AADN02067868 IPI:IPI00682975
Ensembl:ENSGALT00000020603 OMA:PEINICL Uniprot:F1NYG8
Length = 879
Score = 361 (132.1 bits), Expect = 4.8e-52, Sum P(3) = 4.8e-52
Identities = 97/264 (36%), Positives = 141/264 (53%)
Query: 451 ETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDC---IRFFPPEMFSGRSGSW 507
ET +S L+Y+T L+K+ NH L+ S T C FP M + ++
Sbjct: 349 ETVKSLQLSYLTILQKVANHVALLQTDNTSKQQETHIKRVCNEVFSSFPDFMQLSKDAAF 408
Query: 508 -TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRL 566
T D + SGKM VL +LL H R + D+++L S T+ LD+ Q C + RL
Sbjct: 409 ETISDPKY---SGKMRVLQQLLNHFR-KNKDKVLLFSFSTKLLDVLEQYCIASGLDFRRL 464
Query: 567 DGTTSISKRQKLVNHFND-PSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQ 625
DG+T R ++V FN P N + L+S+ AGG GLN +G N ++LFDP WNPAND Q
Sbjct: 465 DGSTKSEDRIRIVREFNRVPEIN--ICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQ 522
Query: 626 AAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQ-QEQTDSSATQGNFLS 684
A R +R GQ K V ++R +S GT+EE +Y RQ+ K+ L +IQ Q++ + +S
Sbjct: 523 AIDRAYRIGQCKDVKVFRLISLGTVEEMMYLRQVYKQLLAYIIQGQKKKKKNLVLSTAMS 582
Query: 685 TEDLRDLFTFHDDVRSEIHENMHC 708
R+ + DVR+ + E C
Sbjct: 583 GRAGRNWYV---DVRTRLQEFGSC 603
Score = 178 (67.7 bits), Expect = 4.8e-52, Sum P(3) = 4.8e-52
Identities = 53/216 (24%), Positives = 108/216 (50%)
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLI--ALCESTRDDVVSG-----------IDSF 290
K +IV P S++ NW+ E+ W +V ++ + E + + G + +
Sbjct: 108 KTFLIVAPLSVLYNWKDELDTWGYFKVSVLHGSKKEGDLNRIKQGKCEVALTTYETLRLY 167
Query: 291 TDPCSSL--QVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFA 348
D +++ +IV E R+ + K +++ L C+ R+ T+ +N++ E +
Sbjct: 168 LDELNNIGWSAVIVD-EVHRIKNPKSQITQTMKSLKCNV--RIGLTGTIL-QNNMNELWC 223
Query: 349 MVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTN 408
++++ PG+LG +F++ + + G+ TAT+ E G + +L+ K++ + LRRT
Sbjct: 224 VMDWAVPGLLGSRVHFKKKFSDPLERGQRHTATKRELATGRKAMVKLARKMSSWFLRRTK 283
Query: 409 ALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV 444
L+S+ LP K +V C LT Q +Y + +++V
Sbjct: 284 VLISDQLPKKEDRMVYCSLTEFQKAVYRAVLKTEDV 319
Score = 132 (51.5 bits), Expect = 4.8e-52, Sum P(3) = 4.8e-52
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 166 NDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQS 225
+D G+ +P T++ R+LR +QREG QF++ + A GCIL DDMGLGKT+Q
Sbjct: 20 SDNGDFIPYTIN----RYLRGYQREGAQFLY------WHYANKRGCILGDDMGLGKTVQV 69
Query: 226 IALLYTLL 233
I+ L +L
Sbjct: 70 ISFLAAVL 77
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 372 (136.0 bits), Expect = 5.0e-52, Sum P(2) = 5.0e-52
Identities = 93/302 (30%), Positives = 161/302 (53%)
Query: 497 PEMFSG-RSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G + G+ +E SGKM +L +LL L++ + R++L S T+ LD+
Sbjct: 604 PYLFDGIEEPPYIEGNHL-IETSGKMSLLDKLLPRLKKE-NSRVLLFSQMTRLLDIIDDY 661
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
CR + YPYLR+DG+T +RQ +N FN+P+ F+FLLS++AGG G+NL + ++LFD
Sbjct: 662 CRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFD 721
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK-VIQQEQTD 674
D+NP D QA R R GQKKRV +YRF++ ++EEK+ +R K L +IQ+ + +
Sbjct: 722 SDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGKLN 781
Query: 675 SSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKND 734
++ + N + ++L D+ F E+++ + + D T K
Sbjct: 782 LNSAKEN--NKQELHDILNFG---APEVYKTQDISSISDEDIDIILADAEKRTIEIEKKL 836
Query: 735 QSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGD 794
++ + + D+ + L G L+ EK+ ++ ++ G S + IL+ S +
Sbjct: 837 KNLENIFDLTNIS-LDGGLNMYNDLEKEASEESTDEEDSSG------SGEETILEGSGNN 889
Query: 795 EV 796
++
Sbjct: 890 DI 891
Score = 260 (96.6 bits), Expect = 5.0e-52, Sum P(2) = 5.0e-52
Identities = 95/316 (30%), Positives = 159/316 (50%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
++P+Q EG+ ++++ L I+G ILAD+MGLGKTLQ+I+LL L F+ K +
Sbjct: 322 MKPYQLEGLNWLYQ-----LYRFKING-ILADEMGLGKTLQTISLLCYLR---FN-KNIK 371
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
KK+II+ P S + NW EIKKW + A D ++ S VL+ +
Sbjct: 372 KKSIIICPRSTLDNWYEEIKKWC---TPMKAFKYYGNKDQRKELNRNLLH-SDFDVLLTT 427
Query: 304 YE-TFRMHSSKFSCSESCDLLICDEAHRLKNDQTLT----------NR---------NDL 343
YE + S+ + L+ DEAHR+KN++++ NR N+L
Sbjct: 428 YEIVIKDKSALYDIDWF--FLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNL 485
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
+E ++++NF P I ++ F + S I +T + K+ I ++L + F+
Sbjct: 486 KELWSLLNFLMPKIFDNSEEFDNLFNISKI------STNDNKQSEI--ITQLHTILKPFM 537
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITA 463
LRR + LPPK + ++ LQ +LY+ + SKN+ + ++++L +
Sbjct: 538 LRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDIL-SKNIDVLNAMTGSKNQMLNILMQ 596
Query: 464 LKKLCNHPKLIYDTIK 479
L+K CNHP L +D I+
Sbjct: 597 LRKCCNHPYL-FDGIE 611
Score = 37 (18.1 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 440 HSKNVKRAISEETKQS 455
H KNV R I +T S
Sbjct: 101 HDKNVHRNIGNDTHVS 116
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 372 (136.0 bits), Expect = 5.0e-52, Sum P(2) = 5.0e-52
Identities = 93/302 (30%), Positives = 161/302 (53%)
Query: 497 PEMFSG-RSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G + G+ +E SGKM +L +LL L++ + R++L S T+ LD+
Sbjct: 604 PYLFDGIEEPPYIEGNHL-IETSGKMSLLDKLLPRLKKE-NSRVLLFSQMTRLLDIIDDY 661
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
CR + YPYLR+DG+T +RQ +N FN+P+ F+FLLS++AGG G+NL + ++LFD
Sbjct: 662 CRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFD 721
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK-VIQQEQTD 674
D+NP D QA R R GQKKRV +YRF++ ++EEK+ +R K L +IQ+ + +
Sbjct: 722 SDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGKLN 781
Query: 675 SSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKND 734
++ + N + ++L D+ F E+++ + + D T K
Sbjct: 782 LNSAKEN--NKQELHDILNFG---APEVYKTQDISSISDEDIDIILADAEKRTIEIEKKL 836
Query: 735 QSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGD 794
++ + + D+ + L G L+ EK+ ++ ++ G S + IL+ S +
Sbjct: 837 KNLENIFDLTNIS-LDGGLNMYNDLEKEASEESTDEEDSSG------SGEETILEGSGNN 889
Query: 795 EV 796
++
Sbjct: 890 DI 891
Score = 260 (96.6 bits), Expect = 5.0e-52, Sum P(2) = 5.0e-52
Identities = 95/316 (30%), Positives = 159/316 (50%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
++P+Q EG+ ++++ L I+G ILAD+MGLGKTLQ+I+LL L F+ K +
Sbjct: 322 MKPYQLEGLNWLYQ-----LYRFKING-ILADEMGLGKTLQTISLLCYLR---FN-KNIK 371
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
KK+II+ P S + NW EIKKW + A D ++ S VL+ +
Sbjct: 372 KKSIIICPRSTLDNWYEEIKKWC---TPMKAFKYYGNKDQRKELNRNLLH-SDFDVLLTT 427
Query: 304 YE-TFRMHSSKFSCSESCDLLICDEAHRLKNDQTLT----------NR---------NDL 343
YE + S+ + L+ DEAHR+KN++++ NR N+L
Sbjct: 428 YEIVIKDKSALYDIDWF--FLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNL 485
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
+E ++++NF P I ++ F + S I +T + K+ I ++L + F+
Sbjct: 486 KELWSLLNFLMPKIFDNSEEFDNLFNISKI------STNDNKQSEI--ITQLHTILKPFM 537
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITA 463
LRR + LPPK + ++ LQ +LY+ + SKN+ + ++++L +
Sbjct: 538 LRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDIL-SKNIDVLNAMTGSKNQMLNILMQ 596
Query: 464 LKKLCNHPKLIYDTIK 479
L+K CNHP L +D I+
Sbjct: 597 LRKCCNHPYL-FDGIE 611
Score = 37 (18.1 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 440 HSKNVKRAISEETKQS 455
H KNV R I +T S
Sbjct: 101 HDKNVHRNIGNDTHVS 116
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 398 (145.2 bits), Expect = 2.4e-51, Sum P(4) = 2.4e-51
Identities = 99/264 (37%), Positives = 144/264 (54%)
Query: 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLC 556
P++ R S D E SGKM V+A +L +Q+ R++L S Q LD+
Sbjct: 706 PDLLE-REHSHQNPDYGNPERSGKMKVVAEVLKVWKQQ-GHRVLLFSQTQQMLDILESFL 763
Query: 557 RERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDP 616
Y Y R+DG T + +R L++ FN+ S++ FVF+L++K GG G NL G NR+++FDP
Sbjct: 764 VANEYSYRRMDGLTPVKQRMALIDEFNN-SEDMFVFVLTTKVGGLGTNLTGANRVIIFDP 822
Query: 617 DWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQEQTDS 675
DWNP+ND QA R WR GQKK V +YR ++ GTIEEKVY RQ+ K L K+++ Q
Sbjct: 823 DWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ--- 879
Query: 676 SATQGNFLSTEDLRDLFTFHDD-----------VRSEIHENMHCTRCQNYDDGAESIGE- 723
Q F D++DLF DD + S++ E ++ Q+ D ES +
Sbjct: 880 ---QRRFFKARDMKDLFILKDDGDSNASTETSNIFSQLAEEINIVGVQS-DKKPESDTQL 935
Query: 724 GDETNSANKNDQSDQEVTDIGGFA 747
+ ++Q+D E+TD G A
Sbjct: 936 ALHKTAEGSSEQTDVEMTDKTGEA 959
Score = 142 (55.0 bits), Expect = 2.4e-51, Sum P(4) = 2.4e-51
Identities = 41/144 (28%), Positives = 65/144 (45%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N L E +++ +F PG LG F + I G A+ + + L +
Sbjct: 578 QNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLI 637
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
++LRR A ++ HL K V+ C LT Q Y F+ S V++ I + + S L
Sbjct: 638 MPYLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQ-IFDGNRNS--LY 694
Query: 460 YITALKKLCNHPKLIYDTIKSGNP 483
I ++K+CNHP L+ NP
Sbjct: 695 GIDVMRKICNHPDLLEREHSHQNP 718
Score = 119 (46.9 bits), Expect = 2.4e-51, Sum P(4) = 2.4e-51
Identities = 37/101 (36%), Positives = 54/101 (53%)
Query: 165 QNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQ 224
Q +GG +P + R L +QR GVQ+++E A GI G D+MGLGKT+Q
Sbjct: 370 QLEGGLNIP----ECIFRKLFDYQRVGVQWLWEL--HCQRAGGIIG----DEMGLGKTIQ 419
Query: 225 SIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265
++ L +L F M K +II+ P +L+ W E +KW
Sbjct: 420 VLSFLGSL---HFS--KMYKPSIIICPVTLLRQWRREAQKW 455
Score = 53 (23.7 bits), Expect = 2.4e-51, Sum P(4) = 2.4e-51
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 299 VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
+LI +YE R+ K E + DE HR++N
Sbjct: 519 LLITTYEQLRLQGEKLLNIE-WGYAVLDEGHRIRN 552
Score = 39 (18.8 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 26/118 (22%), Positives = 44/118 (37%)
Query: 671 EQTDSSATQ--GNFLSTED--LRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIG-EGD 725
EQTD T G + E L+ LF H IH ++ N +D E + E
Sbjct: 946 EQTDVEMTDKTGEAMDEETNILKSLFDAHG-----IHSAVNHDAIMNANDEEEKMRLEHQ 1000
Query: 726 ETNSANKNDQS--------DQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWG 775
+ A + ++ +E + + G +GC S ++ G+ + L G
Sbjct: 1001 ASQVAQRAAEALRQSRMLRSRESISVPTWTGRSGCAGAPSSVRRRFGSTVNSRLTQTG 1058
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 391 (142.7 bits), Expect = 7.0e-51, Sum P(4) = 7.0e-51
Identities = 93/226 (41%), Positives = 135/226 (59%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-RYPYLRLDGTTSIS 573
+E S K+ V+ +L L + D+++L Q LD+ Q R+ ++ YLR+DGTTSI
Sbjct: 1109 IERSAKLKVVETILP-LWFKQGDKVLLFCQTRQMLDIVEQYIRDSTQFNYLRMDGTTSIR 1167
Query: 574 KRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWR 632
+RQ LV FN DPS F+FLL++K GG GLNL G NR++LFDPDWNP+ D QA RV+R
Sbjct: 1168 QRQCLVEQFNIDPSL--FIFLLTTKVGGLGLNLTGANRVILFDPDWNPSTDMQARERVYR 1225
Query: 633 DGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
GQKK V IYR ++ GTIEEK+Y RQ+ K+ L I ++ Q F ++ +DLF
Sbjct: 1226 IGQKKAVTIYRLITLGTIEEKIYHRQIYKQFLTNKILKDPR-----QKRFFKSKHFKDLF 1280
Query: 693 TFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSA-NKNDQSD 737
T+ + + E N + E + + ++ NS NKN+ ++
Sbjct: 1281 TYTKNKKGS--ETGDIFSGSNSEILPEHMNDKNDKNSIKNKNNNNN 1324
Score = 168 (64.2 bits), Expect = 7.0e-51, Sum P(4) = 7.0e-51
Identities = 41/149 (27%), Positives = 75/149 (50%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N L E +++ +F PG LG F+ + I G A+ + + + + L +
Sbjct: 962 QNKLTELWSLFDFVFPGRLGTLPIFKSQFSLPISVGGFANASPIQVQAAYKCAVALRDLI 1021
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
+ ++LRR + + LP K +V+ C LTP Q +LY F+ S ++K + + +++ +
Sbjct: 1022 SPYMLRRVKSDVLKSLPSKNEQVLMCPLTPFQEKLYLEFLDSNDIKSVL--DGRRNALYG 1079
Query: 460 YITALKKLCNHPKLIY-DTIKSGNPGTTG 487
I LKK+CNHP +++ D P G
Sbjct: 1080 -IDILKKICNHPDILHMDASDEDRPHDYG 1107
Score = 121 (47.7 bits), Expect = 7.0e-51, Sum P(4) = 7.0e-51
Identities = 40/133 (30%), Positives = 65/133 (48%)
Query: 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG- 268
G I+ D+MGLGKT+Q ++ L +L G P A+IV P +L+SNW E KW
Sbjct: 815 GGIVGDEMGLGKTVQIVSFLASLHYSRRLGGP----ALIVAPATLLSNWIKEFHKWWPPF 870
Query: 269 RVQLIALCESTR--DDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICD 326
RV L S +D D +L+ ++++ R++ + + +I D
Sbjct: 871 RVGLFHSSGSGGGGNDGSDKEDIVKKIAEKGHILLTTFDSIRINQ-EILLKYHWEYVILD 929
Query: 327 EAHRLKN-DQTLT 338
E H+++N D +T
Sbjct: 930 EGHKIRNPDAEIT 942
Score = 38 (18.4 bits), Expect = 3.1e-13, Sum P(4) = 3.1e-13
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 715 DDGAESIGEGDETNSANK 732
DDG + DE++S +K
Sbjct: 1340 DDGDNNYSSSDESDSKSK 1357
Score = 37 (18.1 bits), Expect = 7.0e-51, Sum P(4) = 7.0e-51
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 159 WQPEEPQNDGGNL 171
W+P ND N+
Sbjct: 25 WKPSTENNDNNNI 37
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 384 (140.2 bits), Expect = 8.1e-51, Sum P(5) = 8.1e-51
Identities = 77/182 (42%), Positives = 115/182 (63%)
Query: 512 GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571
G W + SGKM V+ LL + + R++ + Q L + R+R Y YLR+DGTT+
Sbjct: 829 GYW-KRSGKMIVVESLL-KIWHKQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTT 886
Query: 572 ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
I+ RQ L+ +N+ K+ F+FLL+++ GG G+NL G +R++++DPDWNP+ D QA R W
Sbjct: 887 IASRQPLITRYNE-DKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAW 945
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDL 691
R GQKK+V +YR L+ GTIEEK+Y RQ+ K+ L + ++ Q F + DL +L
Sbjct: 946 RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPK-----QRRFFKSNDLYEL 1000
Query: 692 FT 693
FT
Sbjct: 1001 FT 1002
Score = 178 (67.7 bits), Expect = 8.1e-51, Sum P(5) = 8.1e-51
Identities = 42/136 (30%), Positives = 74/136 (54%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L+E +++ +F PG LG F + I G A+ + K + + L +
Sbjct: 674 QNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDAI 733
Query: 400 NQFILRRTNA--LLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
N ++LRR A +S LP K +V+ C+LT Q ++Y +FI SK V + ++ + + +
Sbjct: 734 NPYLLRRMKADVKMSLSLPDKNEQVLFCRLTDEQRQVYQNFIDSKEVYQILNGDMQ---V 790
Query: 458 LAYITALKKLCNHPKL 473
+ + AL+K+CNHP L
Sbjct: 791 FSGLVALRKICNHPDL 806
Score = 113 (44.8 bits), Expect = 8.1e-51, Sum P(5) = 8.1e-51
Identities = 47/165 (28%), Positives = 76/165 (46%)
Query: 176 VDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL----YT 231
V L + L +Q+ GV++++E L+ G IL D+MGLGKT+Q IA L Y+
Sbjct: 494 VPGFLFKKLFKYQQTGVRWLWE-----LHCQQAGG-ILGDEMGLGKTIQIIAFLAGLSYS 547
Query: 232 LL-CQGFDGKPM-VKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGID 288
+ +G + + + +IV P +++ W E W RV ++ S + V I
Sbjct: 548 KIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAILHETGSYTNKKVKLIR 607
Query: 289 SFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
C +LI SY R+ S +I DE H+++N
Sbjct: 608 EIAS-CHG--ILITSYSYIRLMQDNIH-SYDWHYVILDEGHKIRN 648
Score = 45 (20.9 bits), Expect = 8.1e-51, Sum P(5) = 8.1e-51
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 716 DGAESIGEGDETNSANKNDQSDQEVTDIG---GFAGLAGCLHKLKSSEKQ 762
D AE+ + NS NK+ Q E DI G AG K +E++
Sbjct: 1099 DNAET---ATDINSVNKSKQESLERADISLSQSLPGGAGSSENAKVTEEE 1145
Score = 43 (20.2 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 655 YQRQMSKEG-LQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSE 701
+Q ++ E Q+++Q+ ++ A Q + + E LR+L +FH + E
Sbjct: 1442 FQARVDGEASTQEILQEFESKLPAAQ-SCVFRELLRNLCSFHRNPNGE 1488
Score = 37 (18.1 bits), Expect = 8.1e-51, Sum P(5) = 8.1e-51
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 779 YSMSVPDAILQASAGDEV 796
+S+ DAI++AS+ D V
Sbjct: 1261 HSVMKHDAIMEASSADYV 1278
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 557 (201.1 bits), Expect = 1.6e-50, Sum P(2) = 1.6e-50
Identities = 178/561 (31%), Positives = 274/561 (48%)
Query: 158 LWQPEEPQNDGGNLVPI-TVDPLLVRF--LRPHQREGVQFMFECVSGLLNAAGIHGCILA 214
L Q EE Q+D + + T P ++ LR +Q +G+ ++ L+ ILA
Sbjct: 110 LLQDEEHQDDEDHQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLSG------ILA 163
Query: 215 DDMGLGKTLQSIALL-YTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLI 273
D+MGLGKTLQ+I+ L Y + DG P I++ P S + NW E KW V ++
Sbjct: 164 DEMGLGKTLQTISFLGYLRYIKHIDG-PF----IVIVPKSTLDNWRREFAKWTPD-VNVV 217
Query: 274 ALCESTRDDVVSGIDS--FTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331
L + ++ S I +T + VLI S+E S + ++ DEAHR+
Sbjct: 218 VL-QGDKEQRASIIKDQLYT---AKFDVLITSFEMILREKSALQ-KFRWEYIVVDEAHRI 272
Query: 332 KN-DQTLT---------NR---------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSI 372
KN D +L+ NR N+L E +A++NF P + GD+ F ++
Sbjct: 273 KNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDNQ- 331
Query: 373 ICGREPTATEEEKKLGIERS-SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQ 431
EEEK+ +++ SEL ++ F+LRR A + L PKI V +T +Q
Sbjct: 332 ---NSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDMQ 388
Query: 432 SELYNHFIHSK--NVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFE 489
E Y + V + + ++++L + L+K CNHP L +D + G P TT
Sbjct: 389 VEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYL-FDGAEPGPPYTT--- 444
Query: 490 DCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTL 549
D V SGKM +L ++L + R+++ S ++ L
Sbjct: 445 ---------------------DEHLVYNSGKMIILDKMLKKFKAE-GSRVLIFSQMSRVL 482
Query: 550 DLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGN 609
D+ C R Y Y R+DG+TS R + ++ +N P +F+FLL+++AGG G+NL +
Sbjct: 483 DILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSAD 542
Query: 610 RLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVI 668
++L+D DWNP D QA R R GQKK+V ++RF++ IEEKV +R K L Q VI
Sbjct: 543 IVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVI 602
Query: 669 QQ-EQTDSSATQGNFLSTEDL 688
QQ Q +S+ GN S +DL
Sbjct: 603 QQGRQMNSNNNVGN--SKDDL 621
Score = 337 (123.7 bits), Expect = 1.0e-26, P = 1.0e-26
Identities = 90/253 (35%), Positives = 132/253 (52%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM +L ++L + R+++ S ++ LD+
Sbjct: 430 PYLFDGAEPGPPYTTDEHLVYNSGKMIILDKMLKKFKAE-GSRVLIFSQMSRVLDILEDY 488
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y R+DG+TS R + ++ +N P +F+FLL+++AGG G+NL + ++L+D
Sbjct: 489 CYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYD 548
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ-EQT 673
DWNP D QA R R GQKK+V ++RF++ IEEKV +R K L Q VIQQ Q
Sbjct: 549 SDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQM 608
Query: 674 DSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKN 733
+S+ GN S +DL + H E+ EN T DD E + G E + N
Sbjct: 609 NSNNNVGN--SKDDLIGMIQ-HG--AKEVFENSKGTMLD--DDVEEILKRGAEKTAELNN 661
Query: 734 DQSDQEVTDIGGF 746
+ + DI F
Sbjct: 662 KFNKLGLDDIQNF 674
Score = 41 (19.5 bits), Expect = 1.6e-50, Sum P(2) = 1.6e-50
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 659 MSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCT 709
M+++ +K+ Q++ ++ A ++T D +FH+ R + +H T
Sbjct: 800 MTRDEKRKIAQEKINNAVALTEEEIATRDRLLEESFHNWSRRDFTNFIHAT 850
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 557 (201.1 bits), Expect = 1.6e-50, Sum P(2) = 1.6e-50
Identities = 178/561 (31%), Positives = 274/561 (48%)
Query: 158 LWQPEEPQNDGGNLVPI-TVDPLLVRF--LRPHQREGVQFMFECVSGLLNAAGIHGCILA 214
L Q EE Q+D + + T P ++ LR +Q +G+ ++ L+ ILA
Sbjct: 110 LLQDEEHQDDEDHQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLSG------ILA 163
Query: 215 DDMGLGKTLQSIALL-YTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLI 273
D+MGLGKTLQ+I+ L Y + DG P I++ P S + NW E KW V ++
Sbjct: 164 DEMGLGKTLQTISFLGYLRYIKHIDG-PF----IVIVPKSTLDNWRREFAKWTPD-VNVV 217
Query: 274 ALCESTRDDVVSGIDS--FTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331
L + ++ S I +T + VLI S+E S + ++ DEAHR+
Sbjct: 218 VL-QGDKEQRASIIKDQLYT---AKFDVLITSFEMILREKSALQ-KFRWEYIVVDEAHRI 272
Query: 332 KN-DQTLT---------NR---------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSI 372
KN D +L+ NR N+L E +A++NF P + GD+ F ++
Sbjct: 273 KNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDNQ- 331
Query: 373 ICGREPTATEEEKKLGIERS-SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQ 431
EEEK+ +++ SEL ++ F+LRR A + L PKI V +T +Q
Sbjct: 332 ---NSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDMQ 388
Query: 432 SELYNHFIHSK--NVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFE 489
E Y + V + + ++++L + L+K CNHP L +D + G P TT
Sbjct: 389 VEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYL-FDGAEPGPPYTT--- 444
Query: 490 DCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTL 549
D V SGKM +L ++L + R+++ S ++ L
Sbjct: 445 ---------------------DEHLVYNSGKMIILDKMLKKFKAE-GSRVLIFSQMSRVL 482
Query: 550 DLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGN 609
D+ C R Y Y R+DG+TS R + ++ +N P +F+FLL+++AGG G+NL +
Sbjct: 483 DILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSAD 542
Query: 610 RLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVI 668
++L+D DWNP D QA R R GQKK+V ++RF++ IEEKV +R K L Q VI
Sbjct: 543 IVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVI 602
Query: 669 QQ-EQTDSSATQGNFLSTEDL 688
QQ Q +S+ GN S +DL
Sbjct: 603 QQGRQMNSNNNVGN--SKDDL 621
Score = 337 (123.7 bits), Expect = 1.0e-26, P = 1.0e-26
Identities = 90/253 (35%), Positives = 132/253 (52%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM +L ++L + R+++ S ++ LD+
Sbjct: 430 PYLFDGAEPGPPYTTDEHLVYNSGKMIILDKMLKKFKAE-GSRVLIFSQMSRVLDILEDY 488
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y R+DG+TS R + ++ +N P +F+FLL+++AGG G+NL + ++L+D
Sbjct: 489 CYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYD 548
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ-EQT 673
DWNP D QA R R GQKK+V ++RF++ IEEKV +R K L Q VIQQ Q
Sbjct: 549 SDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQM 608
Query: 674 DSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKN 733
+S+ GN S +DL + H E+ EN T DD E + G E + N
Sbjct: 609 NSNNNVGN--SKDDLIGMIQ-HG--AKEVFENSKGTMLD--DDVEEILKRGAEKTAELNN 661
Query: 734 DQSDQEVTDIGGF 746
+ + DI F
Sbjct: 662 KFNKLGLDDIQNF 674
Score = 41 (19.5 bits), Expect = 1.6e-50, Sum P(2) = 1.6e-50
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 659 MSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCT 709
M+++ +K+ Q++ ++ A ++T D +FH+ R + +H T
Sbjct: 800 MTRDEKRKIAQEKINNAVALTEEEIATRDRLLEESFHNWSRRDFTNFIHAT 850
>UNIPROTKB|E2RGN3 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001890 Uniprot:E2RGN3
Length = 925
Score = 356 (130.4 bits), Expect = 9.6e-50, Sum P(4) = 9.6e-50
Identities = 86/222 (38%), Positives = 126/222 (56%)
Query: 451 ETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF---PPEMFSGRSGSW 507
ET ++ +Y+ L+K+ NH L+ S T C + F P + + S+
Sbjct: 377 ETVKTLYFSYLAVLQKVANHVALLQSASTSKQQETLIKRICDQVFSKFPDFVQKSKDASF 436
Query: 508 -TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRL 566
T D + SGKM VL +LL H R + D+I+L S T+ LD+ Q C + Y RL
Sbjct: 437 ETLSDPKY---SGKMKVLQQLLNHCR-KNKDKILLFSFSTKLLDVLQQYCMAAGFDYRRL 492
Query: 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQA 626
DG+T +R K+V FN +++ + L+S+ AGG GLN +G N +VLFDP WNPAND QA
Sbjct: 493 DGSTKSEERIKIVKEFNS-TQDVNICLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQA 551
Query: 627 AARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
R +R GQ + V ++R +S GT+EE +Y RQ+ K+ L V+
Sbjct: 552 IDRAYRIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVV 593
Score = 176 (67.0 bits), Expect = 9.6e-50, Sum P(4) = 9.6e-50
Identities = 52/215 (24%), Positives = 105/215 (48%)
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRV----------QLIALCESTRDDVVSGIDSFT-- 291
K +IV P S++ NW E+ W RV +L+ + + + ++ ++
Sbjct: 136 KMFLIVAPLSVLYNWRDELDTWGYFRVTILHGNKKDNELVRVKQRKCEIALTTYETLRLC 195
Query: 292 -DPCSSLQ-VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAM 349
D +SL+ ++ E ++ + K +E L C+ R+ T+ +N+++E + +
Sbjct: 196 LDELNSLEWSAVIVDEAHKIKNPKARVTEVMKALKCNV--RIGLTGTIL-QNNMKELWCV 252
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNA 409
+++ PG+LG +F++ + + G+ TAT+ E G + L+ ++ + LRRT
Sbjct: 253 MDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKMMSGWFLRRTKT 312
Query: 410 LLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV 444
L+ + LP K +V C LT Q +Y + +K+V
Sbjct: 313 LIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETKDV 347
Score = 124 (48.7 bits), Expect = 9.6e-50, Sum P(4) = 9.6e-50
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 164 PQNDGGNLVPITVDPLLVRFLRPHQREGVQFMF-ECVSGLLNAAGIHGCILADDMGLGKT 222
P + G+ +P T++ R+LR +QREG QF++ + G GCIL DDMGLGKT
Sbjct: 45 PLSADGDSIPYTIN----RYLRDYQREGAQFLYAHFIQG-------KGCILGDDMGLGKT 93
Query: 223 LQSIALLYTLL 233
+Q I+ L +L
Sbjct: 94 VQVISFLAAVL 104
Score = 37 (18.1 bits), Expect = 9.6e-50, Sum P(4) = 9.6e-50
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 709 TRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIG 744
T+C+ +++ +I DE++ S E D+G
Sbjct: 739 TKCKAFENSDGNIASDDESSDEQPMCLS-VEAKDVG 773
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 370 (135.3 bits), Expect = 1.5e-49, Sum P(3) = 1.5e-49
Identities = 114/338 (33%), Positives = 175/338 (51%)
Query: 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERR-YPYLRLDGTTSISK 574
E SGK+ V+ LL L ++ R +L S Q LD+ ++ Y R+DG+TSI+
Sbjct: 622 EKSGKLKVIRALLT-LWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIAL 680
Query: 575 RQKLVNHFNDPSKNEF--VFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWR 632
RQ LV++FN KNE+ VFLL+++ GG G+NL G +R++LFDPDWNP+ D QA R WR
Sbjct: 681 RQDLVDNFN---KNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWR 737
Query: 633 DGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
GQKK V +YR ++ GTIEEK+Y RQ+ K+ L I ++ Q F DL DLF
Sbjct: 738 LGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPK-----QRRFFKMTDLHDLF 792
Query: 693 TFHDDVRSEIHEN----MHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAG 748
T D+ ++E E + R D+ + + G+E D+ ++ D G
Sbjct: 793 TLGDN-KTEGTETGSMFLGSERVLRKDNSSRN---GNEAEDIPARDRKKHKIHDKGKKVN 848
Query: 749 LAGCLHKLK-SSEKQLGTPLEEDLN--NWGHHFYSMSVPDAILQASAGDEVTF-----VF 800
+ K+ +S ++ P E ++ N SV D I ASAG + T +
Sbjct: 849 SSKVFEKMGIASMEKYKPPQESNVTKTNSDSTLGDDSVLDDIF-ASAGIQSTLKHDDIME 907
Query: 801 TNQVDGKLVPIES-KVSPK-MQATEGNKNPNNHITNPK 836
+Q + LV E+ +V+ + ++A + P + P+
Sbjct: 908 ASQTESILVEKEATRVANEALRAVSSFRRPPRQLIPPQ 945
Score = 166 (63.5 bits), Expect = 1.5e-49, Sum P(3) = 1.5e-49
Identities = 38/135 (28%), Positives = 72/135 (53%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E + + +F PG LG F+ + I G A+ + + + + L +
Sbjct: 474 QNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNVQVQTAYKCACMLRDLI 533
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
+ ++LRR ++ LP K +V+ CKLTPLQ + Y F+ ++++ ++ + + +L
Sbjct: 534 SPYLLRRMKLDVAADLPKKSEQVLFCKLTPLQRKAYQDFLQGSDMQKILNGKRQ---MLY 590
Query: 460 YITALKKLCNHPKLI 474
I L+K+CNHP L+
Sbjct: 591 GIDILRKICNHPDLV 605
Score = 113 (44.8 bits), Expect = 1.5e-49, Sum P(3) = 1.5e-49
Identities = 43/129 (33%), Positives = 60/129 (46%)
Query: 139 ENNVIEENFTLPPGVDPLVLWQPEEPQN--DGGNLVPITVDPLLVRFLRPHQREGVQFMF 196
ENN F G D +L P + +GG +P + P L R+ Q VQ+++
Sbjct: 237 ENNKDRGEFE---GKDEWLLPHPSKKGQTFEGGFTIPGDIRPHLFRY----QVTCVQWLW 289
Query: 197 ECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVS 256
E A GI G D+MGLGKT+Q ++ L +L G KP A+IV P +L+
Sbjct: 290 ELYCQ--EAGGIIG----DEMGLGKTIQIVSFLSSLHHSGKFQKP----ALIVCPATLMK 339
Query: 257 NWEAEIKKW 265
W E W
Sbjct: 340 QWVNEFHTW 348
>UNIPROTKB|F1PQX1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001906 OMA:QSSQPCT
Uniprot:F1PQX1
Length = 995
Score = 356 (130.4 bits), Expect = 1.7e-49, Sum P(4) = 1.7e-49
Identities = 86/222 (38%), Positives = 126/222 (56%)
Query: 451 ETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF---PPEMFSGRSGSW 507
ET ++ +Y+ L+K+ NH L+ S T C + F P + + S+
Sbjct: 439 ETVKTLYFSYLAVLQKVANHVALLQSASTSKQQETLIKRICDQVFSKFPDFVQKSKDASF 498
Query: 508 -TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRL 566
T D + SGKM VL +LL H R + D+I+L S T+ LD+ Q C + Y RL
Sbjct: 499 ETLSDPKY---SGKMKVLQQLLNHCR-KNKDKILLFSFSTKLLDVLQQYCMAAGFDYRRL 554
Query: 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQA 626
DG+T +R K+V FN +++ + L+S+ AGG GLN +G N +VLFDP WNPAND QA
Sbjct: 555 DGSTKSEERIKIVKEFNS-TQDVNICLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQA 613
Query: 627 AARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
R +R GQ + V ++R +S GT+EE +Y RQ+ K+ L V+
Sbjct: 614 IDRAYRIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVV 655
Score = 176 (67.0 bits), Expect = 1.7e-49, Sum P(4) = 1.7e-49
Identities = 52/215 (24%), Positives = 105/215 (48%)
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRV----------QLIALCESTRDDVVSGIDSFT-- 291
K +IV P S++ NW E+ W RV +L+ + + + ++ ++
Sbjct: 198 KMFLIVAPLSVLYNWRDELDTWGYFRVTILHGNKKDNELVRVKQRKCEIALTTYETLRLC 257
Query: 292 -DPCSSLQ-VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAM 349
D +SL+ ++ E ++ + K +E L C+ R+ T+ +N+++E + +
Sbjct: 258 LDELNSLEWSAVIVDEAHKIKNPKARVTEVMKALKCNV--RIGLTGTIL-QNNMKELWCV 314
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNA 409
+++ PG+LG +F++ + + G+ TAT+ E G + L+ ++ + LRRT
Sbjct: 315 MDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKMMSGWFLRRTKT 374
Query: 410 LLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV 444
L+ + LP K +V C LT Q +Y + +K+V
Sbjct: 375 LIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETKDV 409
Score = 124 (48.7 bits), Expect = 1.7e-49, Sum P(4) = 1.7e-49
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 164 PQNDGGNLVPITVDPLLVRFLRPHQREGVQFMF-ECVSGLLNAAGIHGCILADDMGLGKT 222
P + G+ +P T++ R+LR +QREG QF++ + G GCIL DDMGLGKT
Sbjct: 107 PLSADGDSIPYTIN----RYLRDYQREGAQFLYAHFIQG-------KGCILGDDMGLGKT 155
Query: 223 LQSIALLYTLL 233
+Q I+ L +L
Sbjct: 156 VQVISFLAAVL 166
Score = 37 (18.1 bits), Expect = 1.7e-49, Sum P(4) = 1.7e-49
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 709 TRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIG 744
T+C+ +++ +I DE++ S E D+G
Sbjct: 801 TKCKAFENSDGNIASDDESSDEQPMCLS-VEAKDVG 835
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 323 (118.8 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 72/193 (37%), Positives = 112/193 (58%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D + SGKM VL +LL LR++ R++L S T+ LD+
Sbjct: 387 PYLFDGAEPGPPYTTDTHLITNSGKMLVLDKLLAKLREQ-GSRVLLFSQMTRLLDILEDY 445
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +R++ ++ FN P+ ++F+F+LS++AGG G+NL + ++L+D
Sbjct: 446 CMWRGYEYCRLDGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINLATADVVILYD 505
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDS 675
DWNP D QA R R GQKK V ++R ++ T+EE++ +R K L ++ Q Q
Sbjct: 506 SDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ-QGRL 564
Query: 676 SATQGNFLSTEDL 688
Q N L+ +++
Sbjct: 565 IDQQSNKLAKDEM 577
Score = 272 (100.8 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 105/326 (32%), Positives = 153/326 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ +M L G++G ILAD+MGLGKTLQ+IALL Y + G M
Sbjct: 107 LRDYQVRGLNWMIS-----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYRNIPGPHM 160
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCE-STRDDVVSGIDSFTDPCSSLQVLI 301
V + P S + NW E K+WV L A+C +D + I P V +
Sbjct: 161 V-----LVPKSTLHNWMNEFKRWVPS---LRAVCLIGDKDARAAFIRDVMMP-GEWDVCV 211
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR---------ND 342
SYE S F + L+ DEAHR+KN+++ TNR N+
Sbjct: 212 TSYEMVIKEKSVFK-KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNN 270
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQF 402
L E +A++NF P + A F +++T G ++KL +ER L A + F
Sbjct: 271 LHELWALLNFLLPDVFNSADDFDSWFDTKNCLG--------DQKL-VER---LHAVLKPF 318
Query: 403 ILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAY 460
+LRR A + LPPK + L+ +Q E Y + K++ ++ K K +L
Sbjct: 319 LLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRIL-MKDID-ILNSAGKMDKMRLLNI 376
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTT 486
+ L+K CNHP L +D + G P TT
Sbjct: 377 LMQLRKCCNHPYL-FDGAEPGPPYTT 401
Score = 40 (19.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 9/49 (18%), Positives = 28/49 (57%)
Query: 658 QMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706
+++K+ + ++I+ T A++ + L+ ED+ + + +E++E +
Sbjct: 571 KLAKDEMLQMIRHGATHVFASKDSELTEEDITTILERGEKKTAEMNERL 619
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 347 (127.2 bits), Expect = 6.3e-48, Sum P(4) = 6.3e-48
Identities = 91/262 (34%), Positives = 134/262 (51%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERR-YPYLRLDGTTSISKRQ 576
SGKM V+ LL L + T + +L + + LD+ + + + Y R+DGTT I RQ
Sbjct: 735 SGKMQVVRSLL-ELWKETGHKTLLFAQHRIMLDILEKFVKSLSGFNYRRMDGTTPIQHRQ 793
Query: 577 KLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQ 635
+V+ FN DP + VFLL++K GG G+NL G +R++++DPDWNP+ D QA R WR GQ
Sbjct: 794 TMVDEFNKDPDLH--VFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQ 851
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFH 695
K+ V IYR ++ GTIEEK+Y RQ+ K+ L I ++ Q LS DL DLF
Sbjct: 852 KRDVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRQTFQ---LS--DLYDLFALG 906
Query: 696 DDVR-----SEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLA 750
++ + S++ + T +N D A + Q +VT +
Sbjct: 907 EEGQGPTETSKLFKEAEVTYEENRDKDAPKERDASYQRDVEAEKQDISKVTGVAAIEQFQ 966
Query: 751 G-CLHKLKSSEKQLGTPLEEDL 771
G + K + GT E L
Sbjct: 967 GEPEQQAKQESGESGTNSESRL 988
Score = 159 (61.0 bits), Expect = 6.3e-48, Sum P(4) = 6.3e-48
Identities = 44/159 (27%), Positives = 80/159 (50%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E +++ +F P LG FR +E I G A+ + + + + L +
Sbjct: 587 QNNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCAETLKDAI 646
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
+ ++L+R ++ LP K +V+ C+LT Q + Y F+ S+ ++ +I +Q +L
Sbjct: 647 SPYLLQRFKIDVAADLPKKSEQVLFCRLTKPQRQAYEAFLGSEEMQ-SILRGRRQ--VLY 703
Query: 460 YITALKKLCNHP-----KLIYDTIKSGNPGTTGFEDCIR 493
+ L+K+CNHP KL+Y GNP +G +R
Sbjct: 704 GVDILRKICNHPDLQNHKLLYAKPNYGNPTKSGKMQVVR 742
Score = 136 (52.9 bits), Expect = 6.3e-48, Sum P(4) = 6.3e-48
Identities = 51/175 (29%), Positives = 79/175 (45%)
Query: 96 NGYDNGNDQLARRLCARKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDP 155
+G D+GN++L + R W S R R PR ++ N + +
Sbjct: 317 SGLDDGNEKLYQ-----SRLQNWVSRRSAA---RKRARQPRELDTNQVPDIGEADFRDSE 368
Query: 156 LVLW---QPEEPQN--DGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHG 210
W P +P D G +P + PLL + Q+ GVQ+M+E L+ + G
Sbjct: 369 DEEWFKPHPTQPDLHLDNGYRIPGDIHPLLFDY----QKTGVQWMWE-----LHQQQVGG 419
Query: 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265
I+ D+MGLGKT+Q+IA L L K + K I+V P +++ W E +W
Sbjct: 420 -IIGDEMGLGKTIQAIAFLAGL----HYSKRLTKPIIVVCPATVMKQWVNEFHRW 469
Score = 42 (19.8 bits), Expect = 6.3e-48, Sum P(4) = 6.3e-48
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 299 VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT 336
VL+ +Y + ++S E ++ DE H+++N T
Sbjct: 528 VLVTTYSGLQSYASLLIPVEWGGTIL-DEGHKIRNPNT 564
Score = 38 (18.4 bits), Expect = 6.4e-15, Sum P(4) = 6.4e-15
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 605 LIGGNRLVLFDPDWNPANDKQAAA 628
++ G R+V DP A K+ AA
Sbjct: 1007 IVNGKRVVRADPKIIEAEAKRVAA 1030
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 357 (130.7 bits), Expect = 1.2e-47, Sum P(4) = 1.2e-47
Identities = 83/186 (44%), Positives = 111/186 (59%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQ------LCRERRYPYLRLDGTTS 571
SGKM VL LL L Q + + +L Q LD+ + L + YLR+DG+T
Sbjct: 612 SGKMQVLKNLL-RLWQSENHKTLLFCQTRQMLDILEKFVANLSLINGGDFNYLRMDGSTP 670
Query: 572 ISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARV 630
ISKRQ LV+ FN DP + VFLL++K GG G+NL G +R++++DPDWNP+ D QA R
Sbjct: 671 ISKRQMLVDAFNQDPDMH--VFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDIQARERA 728
Query: 631 WRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRD 690
WR GQK+ + IYR ++TG+IEEK+Y RQ+ K L I ++ Q F DL D
Sbjct: 729 WRLGQKRDITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDPK-----QRRFFKANDLHD 783
Query: 691 LFTFHD 696
LFT D
Sbjct: 784 LFTLGD 789
Score = 172 (65.6 bits), Expect = 1.2e-47, Sum P(4) = 1.2e-47
Identities = 44/153 (28%), Positives = 83/153 (54%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E +++ +F PG LG F++ + I G + + K + + L +
Sbjct: 464 QNNLIELWSLFDFVFPGRLGTLPVFQQEFSIPINIGGYANSNNLQVKTAYKCAVVLRDLI 523
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
+ ++LRR + ++ LP K V+ KLT +Q ELY F+ S++++ + + K++ +L
Sbjct: 524 SPYMLRRLKSDVAQDLPKKNEMVLFVKLTKIQQELYESFLQSEDLESIL--KGKRN-VLM 580
Query: 460 YITALKKLCNHPKLIY-DTIKS----GNPGTTG 487
+ L+K+CNHP L+Y DT+ G+P +G
Sbjct: 581 GVDILRKICNHPDLVYRDTLMKRKNYGDPAKSG 613
Score = 100 (40.3 bits), Expect = 1.2e-47, Sum P(4) = 1.2e-47
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265
G I+ D+MGLGKT+Q I+ L L G KP+ ++V P ++++ W E +W
Sbjct: 291 GGIIGDEMGLGKTIQIISFLAGLHYSGLLDKPV----LVVVPATVLNQWVNEFHRW 342
Score = 73 (30.8 bits), Expect = 4.6e-17, Sum P(4) = 4.6e-17
Identities = 24/111 (21%), Positives = 55/111 (49%)
Query: 629 RVWRDGQKKRVF----IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLS 684
++ +D +++R F ++ + G +E+ + EG ++ QQ+ + + Q L
Sbjct: 765 KILKDPKQRRFFKANDLHDLFTLGDQDEEGTETAQLFEGGEQS-QQKYSGTKPRQSRGLF 823
Query: 685 TEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQ 735
+ +D DD S++ ++ ++DG + G+GD T SAN++++
Sbjct: 824 KKKYKD-----DDDFSQVARISGVSKLDKFEDGDHNDGDGDSTYSANEDNR 869
Score = 48 (22.0 bits), Expect = 1.2e-47, Sum P(4) = 1.2e-47
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 299 VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
VL+ +Y R++S K ++ DE H+++N
Sbjct: 405 VLVTTYVGLRIYS-KHILPREWGYVVLDEGHKIRN 438
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 348 (127.6 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 96/293 (32%), Positives = 153/293 (52%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-----RYPYLRLDGTTSI 572
SGKM V+ +LL L + + +L + Q LD+ + + YLR+DGTT+I
Sbjct: 650 SGKMQVVKQLL-LLWHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNI 708
Query: 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWR 632
RQ LV+ FN+ S + VFLL+++ GG G+NL G NR+++FDPDWNP+ D QA R WR
Sbjct: 709 KGRQSLVDRFNNESFD--VFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWR 766
Query: 633 DGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
GQK+ V IYR + G+IEEK+Y RQ+ K+ L I TD Q F +L DLF
Sbjct: 767 IGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRIL---TDPK--QKRFFKIHELHDLF 821
Query: 693 TFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGC 752
+ EN + T + ++ + E + + + ++D +Q V ++ G + L
Sbjct: 822 SLGG-------ENGYST--EELNEEVQKHTENLKNSKSEESDDFEQLV-NLSGVSKLESF 871
Query: 753 LH--KLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQ 803
+ + K + K L E L + ++ D+++ + AG + + T +
Sbjct: 872 YNGKEKKENSKTEDDRLIEGLLGGESNLETVMSHDSVVNSHAGSSSSNIITKE 924
Score = 180 (68.4 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 45/144 (31%), Positives = 76/144 (52%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E +++ +F PG LG F++ + I G AT + + G + + L +
Sbjct: 502 QNNLTELWSLFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLI 561
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
+ ++LRR A ++ LP K V+ CKLT Q Y F+HS ++ + + K++ +L
Sbjct: 562 SPYLLRRVKADVAKDLPQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQI--QNGKRN-VLF 618
Query: 460 YITALKKLCNHPKLIYDTIKSGNP 483
I L+K+CNHP L+ K NP
Sbjct: 619 GIDILRKICNHPDLLDRDTKRHNP 642
Score = 95 (38.5 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 187 HQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKA 246
+Q+ VQ+++E N GI G D+MGLGKT+Q IA + L G P+
Sbjct: 300 YQKTCVQWLYELYQQ--NCGGIIG----DEMGLGKTIQVIAFIAALHHSGLLTGPV---- 349
Query: 247 IIVTPTSLVSNWEAEIKKW 265
+IV P +++ W E + W
Sbjct: 350 LIVCPATVMKQWCNEFQHW 368
Score = 55 (24.4 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 299 VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
+LI +Y R+HS K + DE H+++N
Sbjct: 443 ILITTYVGLRIHSDKL-LKVKWQYAVLDEGHKIRN 476
Score = 44 (20.5 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 405 RRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITAL 464
++ NA L N+ K + V + L+ ++ N + N++ EET+ + TAL
Sbjct: 6 QQDNAKLENNESLKDLGVNVLSQSSLEEKIANDVTNFSNLQSLQQEETRLERSK---TAL 62
Query: 465 KKLCN 469
++ N
Sbjct: 63 QRYVN 67
Score = 42 (19.8 bits), Expect = 6.1e-15, Sum P(4) = 6.1e-15
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 710 RCQNYDDGAESIGEGDETNSANK 732
R +NYDDG + E NS K
Sbjct: 996 RQENYDDGI-TFARSKEINSNTK 1017
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 378 (138.1 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 77/182 (42%), Positives = 116/182 (63%)
Query: 512 GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571
G W + SGKM V+ LL L + R++L + Q L++ +E + YL++DGTT+
Sbjct: 811 GYW-KRSGKMIVVESLL-RLWHKQGHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGTTT 868
Query: 572 ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
I+ RQ L+ FN +K+ FVF+L+++ GG G+NL G NR+V++DPDWNP+ D QA R W
Sbjct: 869 IASRQPLIAQFNQ-NKDIFVFILTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAW 927
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDL 691
R GQK++V +YR L+ GTIEEK+Y RQ+ K+ L + ++ Q F + D+ +L
Sbjct: 928 RIGQKQQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPK-----QRRFFKSNDIYEL 982
Query: 692 FT 693
FT
Sbjct: 983 FT 984
Score = 165 (63.1 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 40/136 (29%), Positives = 74/136 (54%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L+E +++ +F PG LG F + I G A+ + + + + L +
Sbjct: 656 QNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTI 715
Query: 400 NQFILRRTNA-LLSN-HLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
N ++LRR A + +N LP K +V+ C+LT Q ++Y F+ SK V + ++ + + +
Sbjct: 716 NPYLLRRMKADVKANLSLPDKNEQVLFCRLTEDQRQVYQTFLDSKEVYQILNGDMQ---V 772
Query: 458 LAYITALKKLCNHPKL 473
+ + AL+K+CNHP L
Sbjct: 773 FSGLIALRKICNHPDL 788
Score = 102 (41.0 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 42/153 (27%), Positives = 70/153 (45%)
Query: 187 HQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL----YTLL-CQGFDGKP 241
+Q+ GV++M+E L+ G IL D+MGLGKT+Q IA L Y+ L +G + +
Sbjct: 487 YQQTGVRWMWE-----LHCQQAGG-ILGDEMGLGKTIQIIAFLAGLSYSKLKTRGSNYRY 540
Query: 242 M-VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVL 300
+ +IV P +++ W E W +A+ T + +S +L
Sbjct: 541 AGLGPTVIVCPATVMHQWVKEFHTW--WPPFRVAVLHDTGSFTSKKEKLIPEIVASHGIL 598
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
I SY R+ + +I DE H+++N
Sbjct: 599 ITSYSYIRIMQDYIQRYD-WHYVILDEGHKIRN 630
Score = 37 (18.1 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 158 LWQPEEPQNDGGNLVPITVDPLLVRFLRPHQRE 190
L PEEP+ D + + VD L+P++++
Sbjct: 362 LMDPEEPERDDDD--ELWVDDHEEYQLKPYKKK 392
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 326 (119.8 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 69/176 (39%), Positives = 104/176 (59%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+++ R+++ S T+ LD+
Sbjct: 445 PYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDY 503
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +RQ +N +N+P ++FVF+LS++AGG G+NL + ++L+D
Sbjct: 504 CMWRNYEYCRLDGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINLATADVVILYD 563
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
DWNP D QA R R GQ K V ++RF++ T+EE++ +R K L ++ Q+
Sbjct: 564 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 619
Score = 259 (96.2 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 100/325 (30%), Positives = 153/325 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L GI+G ILAD+MGLGKTLQ+I+LL Y + G M
Sbjct: 165 LRDYQVRGLNWLIS-----LYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM 218
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCE-STRDDVVSGIDSFTDPCSSLQVLI 301
V + P S + NW E K+WV L A+C +D + + P V +
Sbjct: 219 V-----LVPKSTLHNWMNEFKRWVP---TLRAVCLIGDKDQRAAFVRDVLLP-GEWDVCV 269
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR---------ND 342
SYE S F + L+ DEAHR+KN+++ TNR N+
Sbjct: 270 TSYEMLIKEKSVFK-KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNN 328
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQF 402
L E +A++NF P + + F +++T+ G ++KL +ER L + F
Sbjct: 329 LHELWALLNFLLPDVFNSSEDFDSWFDTNNCLG--------DQKL-VER---LHMVLRPF 376
Query: 403 ILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISE-ETKQSKILAYI 461
+LRR A + LPPK + L+ +Q E Y + K++ S + + ++L +
Sbjct: 377 LLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDIDILNSAGKLDKMRLLNIL 435
Query: 462 TALKKLCNHPKLIYDTIKSGNPGTT 486
L+K CNHP L +D + G P TT
Sbjct: 436 MQLRKCCNHPYL-FDGAEPGPPYTT 459
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 326 (119.8 bits), Expect = 2.7e-47, Sum P(2) = 2.7e-47
Identities = 69/176 (39%), Positives = 104/176 (59%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+++ R+++ S T+ LD+
Sbjct: 459 PYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDY 517
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +RQ +N +N+P+ +FVF+LS++AGG G+NL + ++L+D
Sbjct: 518 CMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 577
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
DWNP D QA R R GQ K V ++RF++ T+EE++ +R K L ++ Q+
Sbjct: 578 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 633
Score = 259 (96.2 bits), Expect = 2.7e-47, Sum P(2) = 2.7e-47
Identities = 99/325 (30%), Positives = 154/325 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L GI+G ILAD+MGLGKTLQ+I+LL Y + G M
Sbjct: 179 LRDYQVRGLNWLIS-----LYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM 232
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
V + P S + NW +E KKWV ++ + L ++ + + P V +
Sbjct: 233 V-----LVPKSTLHNWMSEFKKWVP-TLRSVCLI-GDKEQRAAFVRDVLLP-GEWDVCVT 284
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR---------NDL 343
SYE S F + L+ DEAHR+KN+++ TNR N+L
Sbjct: 285 SYEMLIKEKSVFK-KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 343
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
E ++++NF P + A F +++T+ G ++KL +ER L + F+
Sbjct: 344 HELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--------DQKL-VER---LHMVLRPFL 391
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYI 461
LRR A + LPPK + L+ +Q E Y + K++ ++ K K +L +
Sbjct: 392 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDID-ILNSAGKMDKMRLLNIL 449
Query: 462 TALKKLCNHPKLIYDTIKSGNPGTT 486
L+K CNHP L +D + G P TT
Sbjct: 450 MQLRKCCNHPYL-FDGAEPGPPYTT 473
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 328 (120.5 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 69/176 (39%), Positives = 105/176 (59%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+++ R+++ S T+ LD+
Sbjct: 460 PYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDY 518
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +RQ+ +N +N+P+ +FVF+LS++AGG G+NL + ++L+D
Sbjct: 519 CMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 578
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
DWNP D QA R R GQ K V ++RF++ T+EE++ +R K L ++ Q+
Sbjct: 579 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 634
Score = 256 (95.2 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 98/325 (30%), Positives = 154/325 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L GI+G ILAD+MGLGKTLQ+I+LL Y + G M
Sbjct: 180 LRDYQVRGLNWLIS-----LYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM 233
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
V + P S + NW +E K+WV ++ + L ++ + + P V +
Sbjct: 234 V-----LVPKSTLHNWMSEFKRWVP-TLRSVCLI-GDKEQRAAFVRDVLLP-GEWDVCVT 285
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR---------NDL 343
SYE S F + L+ DEAHR+KN+++ TNR N+L
Sbjct: 286 SYEMLIKEKSVFK-KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 344
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
E ++++NF P + A F +++T+ G ++KL +ER L + F+
Sbjct: 345 HELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--------DQKL-VER---LHMVLRPFL 392
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYI 461
LRR A + LPPK + L+ +Q E Y + K++ ++ K K +L +
Sbjct: 393 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDID-ILNSAGKMDKMRLLNIL 450
Query: 462 TALKKLCNHPKLIYDTIKSGNPGTT 486
L+K CNHP L +D + G P TT
Sbjct: 451 MQLRKCCNHPYL-FDGAEPGPPYTT 474
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 328 (120.5 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 69/176 (39%), Positives = 105/176 (59%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+++ R+++ S T+ LD+
Sbjct: 460 PYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDY 518
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +RQ+ +N +N+P+ +FVF+LS++AGG G+NL + ++L+D
Sbjct: 519 CMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 578
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
DWNP D QA R R GQ K V ++RF++ T+EE++ +R K L ++ Q+
Sbjct: 579 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 634
Score = 256 (95.2 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 98/325 (30%), Positives = 154/325 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L GI+G ILAD+MGLGKTLQ+I+LL Y + G M
Sbjct: 180 LRDYQVRGLNWLIS-----LYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM 233
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
V + P S + NW +E K+WV ++ + L ++ + + P V +
Sbjct: 234 V-----LVPKSTLHNWMSEFKRWVP-TLRSVCLI-GDKEQRAAFVRDVLLP-GEWDVCVT 285
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR---------NDL 343
SYE S F + L+ DEAHR+KN+++ TNR N+L
Sbjct: 286 SYEMLIKEKSVFK-KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 344
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
E ++++NF P + A F +++T+ G ++KL +ER L + F+
Sbjct: 345 HELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--------DQKL-VER---LHMVLRPFL 392
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYI 461
LRR A + LPPK + L+ +Q E Y + K++ ++ K K +L +
Sbjct: 393 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDID-ILNSAGKMDKMRLLNIL 450
Query: 462 TALKKLCNHPKLIYDTIKSGNPGTT 486
L+K CNHP L +D + G P TT
Sbjct: 451 MQLRKCCNHPYL-FDGAEPGPPYTT 474
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 328 (120.5 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 69/176 (39%), Positives = 105/176 (59%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+++ R+++ S T+ LD+
Sbjct: 460 PYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDY 518
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +RQ+ +N +N+P+ +FVF+LS++AGG G+NL + ++L+D
Sbjct: 519 CMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 578
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
DWNP D QA R R GQ K V ++RF++ T+EE++ +R K L ++ Q+
Sbjct: 579 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 634
Score = 256 (95.2 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 98/325 (30%), Positives = 154/325 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L GI+G ILAD+MGLGKTLQ+I+LL Y + G M
Sbjct: 180 LRDYQVRGLNWLIS-----LYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM 233
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
V + P S + NW +E K+WV ++ + L ++ + + P V +
Sbjct: 234 V-----LVPKSTLHNWMSEFKRWVP-TLRSVCLI-GDKEQRAAFVRDVLLP-GEWDVCVT 285
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR---------NDL 343
SYE S F + L+ DEAHR+KN+++ TNR N+L
Sbjct: 286 SYEMLIKEKSVFK-KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 344
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
E ++++NF P + A F +++T+ G ++KL +ER L + F+
Sbjct: 345 HELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--------DQKL-VER---LHMVLRPFL 392
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYI 461
LRR A + LPPK + L+ +Q E Y + K++ ++ K K +L +
Sbjct: 393 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDID-ILNSAGKMDKMRLLNIL 450
Query: 462 TALKKLCNHPKLIYDTIKSGNPGTT 486
L+K CNHP L +D + G P TT
Sbjct: 451 MQLRKCCNHPYL-FDGAEPGPPYTT 474
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 325 (119.5 bits), Expect = 4.3e-47, Sum P(2) = 4.3e-47
Identities = 88/276 (31%), Positives = 142/276 (51%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM L +LL ++++ R+++ S T+ LD+
Sbjct: 467 PYLFDGAEPGPPYTTDEHIVGNSGKMVALDKLLARIKEQ-GSRVLIFSQMTRLLDILEDY 525
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +R++ ++ FN P+ ++F+F+LS++AGG G+NL + ++L+D
Sbjct: 526 CMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYD 585
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDS 675
DWNP D QA R R GQKK V ++R ++ T+EE++ +R K L ++ Q Q
Sbjct: 586 SDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ-QGRL 644
Query: 676 SATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQ 735
Q N L+ E++ + +R C + D+ +I E E +A N++
Sbjct: 645 IDQQSNKLAKEEMLQM------IRHGATHVFACKESELTDEDIVTILERGEKKTAEMNER 698
Query: 736 SDQE-VTDIGGFA-GLAGCLHKLKSS---EKQ-LGT 765
+ + + F L L+K + EKQ LGT
Sbjct: 699 MQKMGESSLRNFRMDLEQSLYKFEGEDYREKQKLGT 734
Score = 258 (95.9 bits), Expect = 4.3e-47, Sum P(2) = 4.3e-47
Identities = 105/339 (30%), Positives = 153/339 (45%)
Query: 172 VPITVDPLLVRF--LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL 229
V V P V+ LR +Q G+ ++ L G++G ILAD+MGLGKTLQ+IALL
Sbjct: 173 VRFEVSPSYVKGGPLRDYQIRGLNWLIS-----LYENGVNG-ILADEMGLGKTLQTIALL 226
Query: 230 -YTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGID 288
Y + G MV + P S + NW E K+WV L +C DV +
Sbjct: 227 GYLKHYRNIPGPHMV-----LVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDVRAAFI 278
Query: 289 SFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL----------T 338
V + SYE S F L+ DEAHR+KN+++ T
Sbjct: 279 RDEMMPGEWDVCVTSYEMVIKEKSVFK-KFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 337
Query: 339 NR---------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGI 389
NR N+L E +A++NF P + A F +++T G ++KL +
Sbjct: 338 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLG--------DQKL-V 388
Query: 390 ERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAIS 449
ER L A + F+LRR + LPPK + L+ +Q E Y + K++ ++
Sbjct: 389 ER---LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKIL-MKDID-VLN 443
Query: 450 EETKQSK--ILAYITALKKLCNHPKLIYDTIKSGNPGTT 486
K K +L + L+K CNHP L +D + G P TT
Sbjct: 444 SSGKMDKMRLLNILMQLRKCCNHPYL-FDGAEPGPPYTT 481
>RGD|1310600 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006974 "response to
DNA damage stimulus" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=ISO]
[GO:0051276 "chromosome organization" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 304 (112.1 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 56/107 (52%), Positives = 79/107 (73%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T +R++L+N FNDPS ++FLLS++AG G+NLIG NR+V+FD
Sbjct: 777 RNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDAS 836
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
WNP +D QA RV+R GQKK +IYR ++ T+E+K+Y RQ+SK+G+
Sbjct: 837 WNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGM 883
Score = 156 (60.0 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 40/143 (27%), Positives = 73/143 (51%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L + +
Sbjct: 495 QNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLL 554
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+ RR + +L HLP K V+ +L+ +Q +LY F+ + S + + A
Sbjct: 555 EGFVQRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFM-DRFRDCGSSGWLGLNPLKA 613
Query: 460 YITALKKLCNHPKLIYDTIKSGN 482
+ K + NHP ++Y+ ++ N
Sbjct: 614 FCVCCK-IWNHPDVLYEALQKEN 635
Score = 142 (55.0 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 178 PLLVRFLRPHQREGVQFMFE-CVSGL--LNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
P L R ++PHQ G++F+++ V L + GCILA MGLGKTLQ I+ + L
Sbjct: 264 PQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVL-- 321
Query: 235 QGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
F P K + + P + + NW AE W+
Sbjct: 322 --FRHTP-AKTVLAIVPVNTLQNWLAEFNMWL 350
Score = 79 (32.9 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 305 ETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR 340
+ FR K C D++ICDE HR+KN Q T++
Sbjct: 441 QEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQ 476
>RGD|1561889 [details] [associations]
symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0019901 "protein kinase binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 304 (112.1 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 56/107 (52%), Positives = 79/107 (73%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T +R++L+N FNDPS ++FLLS++AG G+NLIG NR+V+FD
Sbjct: 777 RNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDAS 836
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
WNP +D QA RV+R GQKK +IYR ++ T+E+K+Y RQ+SK+G+
Sbjct: 837 WNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGM 883
Score = 156 (60.0 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 40/143 (27%), Positives = 73/143 (51%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L + +
Sbjct: 495 QNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLL 554
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+ RR + +L HLP K V+ +L+ +Q +LY F+ + S + + A
Sbjct: 555 EGFVQRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFM-DRFRDCGSSGWLGLNPLKA 613
Query: 460 YITALKKLCNHPKLIYDTIKSGN 482
+ K + NHP ++Y+ ++ N
Sbjct: 614 FCVCCK-IWNHPDVLYEALQKEN 635
Score = 142 (55.0 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 178 PLLVRFLRPHQREGVQFMFE-CVSGL--LNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
P L R ++PHQ G++F+++ V L + GCILA MGLGKTLQ I+ + L
Sbjct: 264 PQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVL-- 321
Query: 235 QGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
F P K + + P + + NW AE W+
Sbjct: 322 --FRHTP-AKTVLAIVPVNTLQNWLAEFNMWL 350
Score = 79 (32.9 bits), Expect = 5.0e-47, Sum P(4) = 5.0e-47
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 305 ETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR 340
+ FR K C D++ICDE HR+KN Q T++
Sbjct: 441 QEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQ 476
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 326 (119.8 bits), Expect = 5.5e-47, Sum P(2) = 5.5e-47
Identities = 69/176 (39%), Positives = 104/176 (59%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+++ R+++ S T+ LD+
Sbjct: 459 PYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDY 517
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +RQ +N +N+P+ +FVF+LS++AGG G+NL + ++L+D
Sbjct: 518 CMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 577
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
DWNP D QA R R GQ K V ++RF++ T+EE++ +R K L ++ Q+
Sbjct: 578 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 633
Score = 256 (95.2 bits), Expect = 5.5e-47, Sum P(2) = 5.5e-47
Identities = 98/325 (30%), Positives = 154/325 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L GI+G ILAD+MGLGKTLQ+I+LL Y + G M
Sbjct: 179 LRDYQVRGLNWLIS-----LYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM 232
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
V + P S + NW +E K+WV ++ + L ++ + + P V +
Sbjct: 233 V-----LVPKSTLHNWMSEFKRWVP-TLRSVCLI-GDKEQRAAFVRDVLLP-GEWDVCVT 284
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR---------NDL 343
SYE S F + L+ DEAHR+KN+++ TNR N+L
Sbjct: 285 SYEMLIKEKSVFK-KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 343
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
E ++++NF P + A F +++T+ G ++KL +ER L + F+
Sbjct: 344 HELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--------DQKL-VER---LHMVLRPFL 391
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYI 461
LRR A + LPPK + L+ +Q E Y + K++ ++ K K +L +
Sbjct: 392 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDID-ILNSAGKMDKMRLLNIL 449
Query: 462 TALKKLCNHPKLIYDTIKSGNPGTT 486
L+K CNHP L +D + G P TT
Sbjct: 450 MQLRKCCNHPYL-FDGAEPGPPYTT 473
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 326 (119.8 bits), Expect = 5.5e-47, Sum P(2) = 5.5e-47
Identities = 69/176 (39%), Positives = 104/176 (59%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+++ R+++ S T+ LD+
Sbjct: 460 PYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDY 518
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +RQ +N +N+P+ +FVF+LS++AGG G+NL + ++L+D
Sbjct: 519 CMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 578
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
DWNP D QA R R GQ K V ++RF++ T+EE++ +R K L ++ Q+
Sbjct: 579 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 634
Score = 256 (95.2 bits), Expect = 5.5e-47, Sum P(2) = 5.5e-47
Identities = 98/325 (30%), Positives = 154/325 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L GI+G ILAD+MGLGKTLQ+I+LL Y + G M
Sbjct: 180 LRDYQVRGLNWLIS-----LYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM 233
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
V + P S + NW +E K+WV ++ + L ++ + + P V +
Sbjct: 234 V-----LVPKSTLHNWMSEFKRWVP-TLRSVCLI-GDKEQRAAFVRDVLLP-GEWDVCVT 285
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR---------NDL 343
SYE S F + L+ DEAHR+KN+++ TNR N+L
Sbjct: 286 SYEMLIKEKSVFK-KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 344
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
E ++++NF P + A F +++T+ G ++KL +ER L + F+
Sbjct: 345 HELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--------DQKL-VER---LHMVLRPFL 392
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYI 461
LRR A + LPPK + L+ +Q E Y + K++ ++ K K +L +
Sbjct: 393 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDID-ILNSAGKMDKMRLLNIL 450
Query: 462 TALKKLCNHPKLIYDTIKSGNPGTT 486
L+K CNHP L +D + G P TT
Sbjct: 451 MQLRKCCNHPYL-FDGAEPGPPYTT 474
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 319 (117.4 bits), Expect = 8.0e-47, Sum P(2) = 8.0e-47
Identities = 71/193 (36%), Positives = 110/193 (56%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+++ R+++ S T+ LD+
Sbjct: 466 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQ-GSRVLIFSQMTRLLDILEDY 524
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +R++ + FN P+ + F+F+LS++AGG G+NL + ++L+D
Sbjct: 525 CMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYD 584
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDS 675
DWNP D QA R R GQKK V ++R ++ T+EE++ +R K L ++ Q Q
Sbjct: 585 SDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ-QGRL 643
Query: 676 SATQGNFLSTEDL 688
Q N ++ E++
Sbjct: 644 IDQQSNKMAKEEM 656
Score = 257 (95.5 bits), Expect = 8.0e-47, Sum P(2) = 8.0e-47
Identities = 106/340 (31%), Positives = 155/340 (45%)
Query: 172 VPITVDPLLVRF--LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL 229
V V P V+ LR +Q G+ ++ L G++G ILAD+MGLGKTLQ+IALL
Sbjct: 172 VRFEVSPSYVKGGPLRDYQIRGLNWLIS-----LYENGVNG-ILADEMGLGKTLQTIALL 225
Query: 230 -YTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC-ESTRDDVVSGI 287
Y + G MV + P S + NW E K+WV L +C +D + I
Sbjct: 226 GYLKHYRNIPGPHMV-----LVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFI 277
Query: 288 DSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL---------- 337
P V + SYE S F L+ DEAHR+KN+++
Sbjct: 278 RDEMMP-GEWDVCVTSYEMVIKEKSVFK-KFHWRYLVIDEAHRIKNEKSKLSEIVREFKS 335
Query: 338 TNR---------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG 388
TNR N+L E +A++NF P + A F +++T G ++KL
Sbjct: 336 TNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLG--------DQKL- 386
Query: 389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI 448
+ER L A + F+LRR + LPPK + L+ +Q E Y + K++ +
Sbjct: 387 VER---LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKIL-MKDID-VL 441
Query: 449 SEETKQSK--ILAYITALKKLCNHPKLIYDTIKSGNPGTT 486
+ K K +L + L+K CNHP L +D + G P TT
Sbjct: 442 NSAGKMDKMRLLNILMQLRKCCNHPYL-FDGAEPGPPYTT 480
Score = 46 (21.3 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 658 QMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706
+M+KE + ++I+ T A++ + L+ ED+ L + +E++E +
Sbjct: 650 KMAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGERKTAEMNERL 698
>UNIPROTKB|F5H493 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0007256 "activation of JNKK
activity" evidence=IEA] [GO:0007257 "activation of JUN kinase
activity" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0009636
"response to toxic substance" evidence=IEA] [GO:0010165 "response
to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0003677 GO:GO:0009636 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
EMBL:AC073366 GO:GO:0006290 GO:GO:0007256 EMBL:AL138760
HGNC:HGNC:3438 ChiTaRS:ERCC6 GO:GO:0000303 IPI:IPI01012579
ProteinModelPortal:F5H493 SMR:F5H493 Ensembl:ENST00000542458
UCSC:uc009xod.3 ArrayExpress:F5H493 Bgee:F5H493 Uniprot:F5H493
Length = 863
Score = 392 (143.0 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 80/182 (43%), Positives = 117/182 (64%)
Query: 512 GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571
G W + SGKM V+ LL + + R++L S Q LD+ R ++Y YL++DGTT+
Sbjct: 203 GYW-KRSGKMIVVESLL-KIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTT 260
Query: 572 ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
I+ RQ L+ +N+ + + FVFLL+++ GG G+NL G NR+V++DPDWNP+ D QA R W
Sbjct: 261 IASRQPLITRYNEDT-SIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAW 319
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDL 691
R GQKK+V +YR L+ GTIEEK+Y RQ+ K+ L + ++ Q F + DL +L
Sbjct: 320 RIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPK-----QRRFFKSNDLYEL 374
Query: 692 FT 693
FT
Sbjct: 375 FT 376
Score = 180 (68.4 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 43/136 (31%), Positives = 74/136 (54%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E +++ +F PG LG F + I G A+ + K + + L +
Sbjct: 49 QNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 108
Query: 400 NQFILRR--TNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
N ++LRR ++ +S LP K +V+ C+LT Q ++Y +F+ SK V R ++ E + I
Sbjct: 109 NPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQ---I 165
Query: 458 LAYITALKKLCNHPKL 473
+ + AL+K+CNHP L
Sbjct: 166 FSGLIALRKICNHPDL 181
Score = 45 (20.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 665 QKVIQQEQTDSSATQGNFLSTEDLRDLFTFH 695
++++Q+ ++ SA+Q + + E LR+L TFH
Sbjct: 818 REILQEFESKLSASQ-SCVFRELLRNLCTFH 847
>UNIPROTKB|H0Y760 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
ProteinModelPortal:H0Y760 Ensembl:ENST00000432863 Uniprot:H0Y760
Length = 1296
Score = 304 (112.1 bits), Expect = 1.6e-46, Sum P(5) = 1.6e-46
Identities = 56/107 (52%), Positives = 79/107 (73%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T +R++L+N FNDPS ++FLLS++AG G+NLIG NR+V+FD
Sbjct: 607 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDAS 666
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
WNP +D QA RV+R GQKK +IYR ++ T+E+K+Y RQ+SK+G+
Sbjct: 667 WNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGM 713
Score = 152 (58.6 bits), Expect = 1.6e-46, Sum P(5) = 1.6e-46
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L + +
Sbjct: 325 QNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLL 384
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+ RR + +L HLP K V+ +L+ +Q +LY F+ + S + + A
Sbjct: 385 EGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFM-DRFRDCGSSGWLGLNPLKA 443
Query: 460 YITALKKLCNHPKLIYDTIK 479
+ K + NHP ++Y+ ++
Sbjct: 444 FCVCCK-IWNHPDVLYEALQ 462
Score = 142 (55.0 bits), Expect = 1.6e-46, Sum P(5) = 1.6e-46
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 178 PLLVRFLRPHQREGVQFMFE-CVSGL--LNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
P L R ++PHQ G++F+++ V L + GCILA MGLGKTLQ I+ + L
Sbjct: 94 PQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVL-- 151
Query: 235 QGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
F P K + + P + + NW AE W+
Sbjct: 152 --FRHTP-AKTVLAIVPVNTLQNWLAEFNMWL 180
Score = 79 (32.9 bits), Expect = 1.6e-46, Sum P(5) = 1.6e-46
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 305 ETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR 340
+ FR K C D++ICDE HR+KN Q T++
Sbjct: 271 QEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQ 306
Score = 42 (19.8 bits), Expect = 1.6e-46, Sum P(5) = 1.6e-46
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP 562
+E S KM +L L+ + D+I++ S TL L + +R P
Sbjct: 546 LENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIEEFLGKREVP 592
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 319 (117.4 bits), Expect = 2.6e-46, Sum P(2) = 2.6e-46
Identities = 71/193 (36%), Positives = 110/193 (56%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+++ R+++ S T+ LD+
Sbjct: 466 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQ-GSRVLIFSQMTRLLDILEDY 524
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +R++ + FN P+ + F+F+LS++AGG G+NL + ++L+D
Sbjct: 525 CMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYD 584
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDS 675
DWNP D QA R R GQKK V ++R ++ T+EE++ +R K L ++ Q Q
Sbjct: 585 SDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ-QGRL 643
Query: 676 SATQGNFLSTEDL 688
Q N ++ E++
Sbjct: 644 IDQQSNKMAKEEM 656
Score = 257 (95.5 bits), Expect = 2.6e-46, Sum P(2) = 2.6e-46
Identities = 106/340 (31%), Positives = 155/340 (45%)
Query: 172 VPITVDPLLVRF--LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL 229
V V P V+ LR +Q G+ ++ L G++G ILAD+MGLGKTLQ+IALL
Sbjct: 172 VRFEVSPSYVKGGPLRDYQIRGLNWLIS-----LYENGVNG-ILADEMGLGKTLQTIALL 225
Query: 230 -YTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC-ESTRDDVVSGI 287
Y + G MV + P S + NW E K+WV L +C +D + I
Sbjct: 226 GYLKHYRNIPGPHMV-----LVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFI 277
Query: 288 DSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL---------- 337
P V + SYE S F L+ DEAHR+KN+++
Sbjct: 278 RDEMMP-GEWDVCVTSYEMVIKEKSVFK-KFHWRYLVIDEAHRIKNEKSKLSEIVREFKS 335
Query: 338 TNR---------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG 388
TNR N+L E +A++NF P + A F +++T G ++KL
Sbjct: 336 TNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLG--------DQKL- 386
Query: 389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI 448
+ER L A + F+LRR + LPPK + L+ +Q E Y + K++ +
Sbjct: 387 VER---LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKIL-MKDID-VL 441
Query: 449 SEETKQSK--ILAYITALKKLCNHPKLIYDTIKSGNPGTT 486
+ K K +L + L+K CNHP L +D + G P TT
Sbjct: 442 NSAGKMDKMRLLNILMQLRKCCNHPYL-FDGAEPGPPYTT 480
Score = 46 (21.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 658 QMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706
+M+KE + ++I+ T A++ + L+ ED+ L + +E++E +
Sbjct: 650 KMAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGERKTAEMNERL 698
>MGI|MGI:1933196 [details] [associations]
symbol:Rad54l2 "RAD54 like 2 (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1933196 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 GO:GO:0003712 HSSP:Q97XQ5
CTD:23132 eggNOG:COG0553 HOGENOM:HOG000168429 HOVERGEN:HBG104283
KO:K10876 OrthoDB:EOG4X6C7G InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AJ132389 EMBL:BC133714 EMBL:AK143506
IPI:IPI00118760 RefSeq:NP_109655.2 UniGene:Mm.246689
ProteinModelPortal:Q99NG0 SMR:Q99NG0 STRING:Q99NG0
PhosphoSite:Q99NG0 PaxDb:Q99NG0 PRIDE:Q99NG0 GeneID:81000
KEGG:mmu:81000 UCSC:uc009rko.1 InParanoid:Q99NG0 NextBio:350334
CleanEx:MM_RAD54L2 Genevestigator:Q99NG0 Uniprot:Q99NG0
Length = 1466
Score = 300 (110.7 bits), Expect = 3.2e-46, Sum P(5) = 3.2e-46
Identities = 56/107 (52%), Positives = 78/107 (72%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T +R++L+N FNDPS ++FLLS++AG G+NLIG NR+V+FD
Sbjct: 777 RNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDAS 836
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
WNP +D QA RV+R GQKK IYR ++ T+E+K+Y RQ+SK+G+
Sbjct: 837 WNPCHDAQAVCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGM 883
Score = 157 (60.3 bits), Expect = 3.2e-46, Sum P(5) = 3.2e-46
Identities = 40/143 (27%), Positives = 73/143 (51%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L + +
Sbjct: 495 QNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLL 554
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+ RR + +L HLP K V+ +L+ +Q +LY F+ + S + + A
Sbjct: 555 EGFVQRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFM-DRFRDCGTSGWLGLNPLKA 613
Query: 460 YITALKKLCNHPKLIYDTIKSGN 482
+ K + NHP ++Y+ ++ N
Sbjct: 614 FCVCCK-IWNHPDVLYEALQKEN 635
Score = 142 (55.0 bits), Expect = 3.2e-46, Sum P(5) = 3.2e-46
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 178 PLLVRFLRPHQREGVQFMFE-CVSGL--LNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
P L R ++PHQ G++F+++ V L + GCILA MGLGKTLQ I+ + L
Sbjct: 264 PQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVL-- 321
Query: 235 QGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
F P K + + P + + NW AE W+
Sbjct: 322 --FRHTP-AKTVLAIVPVNTLQNWLAEFNMWL 350
Score = 79 (32.9 bits), Expect = 3.2e-46, Sum P(5) = 3.2e-46
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 305 ETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR 340
+ FR K C D++ICDE HR+KN Q T++
Sbjct: 441 QEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQ 476
Score = 42 (19.8 bits), Expect = 3.2e-46, Sum P(5) = 3.2e-46
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYL 564
+E S KM +L L+ + D+I++ S TL L + +R P L
Sbjct: 716 LENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIEEFLGKRDMPCL 764
Score = 37 (18.1 bits), Expect = 1.6e-18, Sum P(4) = 1.6e-18
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 731 NKNDQSDQEVTDIGGFAGLAGCL-H--KLKSSEKQLGTPLEEDLNN 773
N ++ D +V ++G A C H K+K + L + + E N+
Sbjct: 635 NLANEQDLDVEELGSAGTSARCPPHGTKVKGEDSALPSSMGEATNS 680
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 516 (186.7 bits), Expect = 3.5e-46, P = 3.5e-46
Identities = 165/524 (31%), Positives = 256/524 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q G+Q+M + LN ILAD+MGLGKT+Q+I+L+ L+ + P
Sbjct: 417 LKEYQLRGLQWMISLYNNHLNG------ILADEMGLGKTIQTISLITHLIEKKRQNGPF- 469
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S ++NW E ++W V+++ V + S+ QVL+ +
Sbjct: 470 ---LVIVPLSTLTNWTMEFERWAPSIVKIVY---KGPPQVRKALHPQVRH-SNFQVLLTT 522
Query: 304 YETFRMHSSKFSCSESCDLLICDEAHRLKNDQT-LTN-------------------RNDL 343
YE S + ++I DE HR+KN Q+ LTN +N+L
Sbjct: 523 YEYIIKDRPLLSRIKWIYMII-DEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNL 581
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIIC--GREPTA-TEEEKKLGIERSSELSAKVN 400
E +A++NF P I F ++ T G++ TEEE L I R L +
Sbjct: 582 PELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRR---LHKVLR 638
Query: 401 QFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELY----NH-FIHSKNVKRAISEETKQS 455
F+LRR + LP K+ +V+ C+++ LQ +LY H ++ ++ KR +T
Sbjct: 639 PFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRG---KTGIK 695
Query: 456 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWV 515
+ + LKK+CNHP + D +S +P TGF D W
Sbjct: 696 GLQNTVMQLKKICNHPFVFEDVERSIDP--TGFNY--------------------DMLW- 732
Query: 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKR 575
+SGK +L R+L L R+ RI++ TQ +++ R++ YLRLDG+T R
Sbjct: 733 RVSGKFELLDRILPKLF-RSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDR 791
Query: 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQ 635
KL+ FNDP+ +FLLS++AGG GLNL + +++FD DWNP D QA R R GQ
Sbjct: 792 SKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQ 851
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSSAT 678
K V IYR ++ ++EE + R K + KVIQ + D+ +T
Sbjct: 852 TKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKST 895
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 328 (120.5 bits), Expect = 3.5e-46, Sum P(2) = 3.5e-46
Identities = 69/176 (39%), Positives = 107/176 (60%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+++ R+++ S T+ LD+
Sbjct: 443 PYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDY 501
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T +RQ +N FN+P+ ++F+F+LS++AGG G+NL + ++++D
Sbjct: 502 CMWRNYGYCRLDGQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINLATADVVIIYD 561
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
DWNP D QA R R GQKK+V ++RF++ T+EE++ +R K L ++ Q+
Sbjct: 562 SDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 617
Score = 246 (91.7 bits), Expect = 3.5e-46, Sum P(2) = 3.5e-46
Identities = 100/326 (30%), Positives = 153/326 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L GI+G ILAD+MGLGKTLQ+I+LL Y + G M
Sbjct: 163 LRDYQVRGLNWLIS-----LYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM 216
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCE-STRDDVVSGIDSFTDPCSSLQVLI 301
V + P S + NW E K+WV L A+C R++ + I P V +
Sbjct: 217 V-----LVPKSTLYNWMNEFKRWVPS---LKAVCLIGDREERTAFIRDTLLP-GEWDVCV 267
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR---------ND 342
SYE + + F + L+ DEAHR+KN+++ TNR N+
Sbjct: 268 TSYEMLIIERAVFK-KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNN 326
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQF 402
L E +A++NF P + + F +++T+ G + KL +ER L + F
Sbjct: 327 LHELWALLNFLLPDVFNSSEDFDAWFDTNNCLG--------DTKL-VER---LHTVLRPF 374
Query: 403 ILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAY 460
+LRR A + L PK + L+ +Q E Y + K++ ++ K K +L
Sbjct: 375 LLRRIKADVEKSLLPKKEIKIYVGLSKMQREWYTKIL-MKDID-ILNSAGKMDKMRLLNV 432
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTT 486
+ L+K CNHP L +D + G P TT
Sbjct: 433 LMQLRKCCNHPYL-FDGAEPGPPYTT 457
>UNIPROTKB|Q9Y4B4 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 EMBL:AB018352
EMBL:BC001474 EMBL:BC024298 IPI:IPI00294787 RefSeq:NP_055921.2
UniGene:Hs.105399 HSSP:Q97XQ5 ProteinModelPortal:Q9Y4B4 SMR:Q9Y4B4
DIP:DIP-47284N IntAct:Q9Y4B4 MINT:MINT-3086380 STRING:Q9Y4B4
PhosphoSite:Q9Y4B4 DMDM:296439458 PaxDb:Q9Y4B4 PRIDE:Q9Y4B4
DNASU:23132 Ensembl:ENST00000409535 Ensembl:ENST00000565618
GeneID:23132 KEGG:hsa:23132 UCSC:uc003dbj.3 CTD:23132
GeneCards:GC03P051637 HGNC:HGNC:29123 HPA:HPA035004
neXtProt:NX_Q9Y4B4 PharmGKB:PA143485591 eggNOG:COG0553
HOGENOM:HOG000168429 HOVERGEN:HBG104283 InParanoid:Q9Y4B4 KO:K10876
OMA:HNLTTPF OrthoDB:EOG4X6C7G SABIO-RK:Q9Y4B4 GenomeRNAi:23132
NextBio:44383 ArrayExpress:Q9Y4B4 Bgee:Q9Y4B4 CleanEx:HS_RAD54L2
Genevestigator:Q9Y4B4 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Uniprot:Q9Y4B4
Length = 1467
Score = 304 (112.1 bits), Expect = 3.7e-46, Sum P(5) = 3.7e-46
Identities = 56/107 (52%), Positives = 79/107 (73%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T +R++L+N FNDPS ++FLLS++AG G+NLIG NR+V+FD
Sbjct: 778 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDAS 837
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
WNP +D QA RV+R GQKK +IYR ++ T+E+K+Y RQ+SK+G+
Sbjct: 838 WNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGM 884
Score = 152 (58.6 bits), Expect = 3.7e-46, Sum P(5) = 3.7e-46
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L + +
Sbjct: 496 QNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLL 555
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+ RR + +L HLP K V+ +L+ +Q +LY F+ + S + + A
Sbjct: 556 EGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFM-DRFRDCGSSGWLGLNPLKA 614
Query: 460 YITALKKLCNHPKLIYDTIK 479
+ K + NHP ++Y+ ++
Sbjct: 615 FCVCCK-IWNHPDVLYEALQ 633
Score = 142 (55.0 bits), Expect = 3.7e-46, Sum P(5) = 3.7e-46
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 178 PLLVRFLRPHQREGVQFMFE-CVSGL--LNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
P L R ++PHQ G++F+++ V L + GCILA MGLGKTLQ I+ + L
Sbjct: 265 PQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVL-- 322
Query: 235 QGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
F P K + + P + + NW AE W+
Sbjct: 323 --FRHTP-AKTVLAIVPVNTLQNWLAEFNMWL 351
Score = 79 (32.9 bits), Expect = 3.7e-46, Sum P(5) = 3.7e-46
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 305 ETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR 340
+ FR K C D++ICDE HR+KN Q T++
Sbjct: 442 QEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQ 477
Score = 42 (19.8 bits), Expect = 3.7e-46, Sum P(5) = 3.7e-46
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP 562
+E S KM +L L+ + D+I++ S TL L + +R P
Sbjct: 717 LENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIEEFLGKREVP 763
>ZFIN|ZDB-GENE-030912-11 [details] [associations]
symbol:atrx "alpha thalassemia/mental retardation
syndrome X-linked homolog (human)" species:7955 "Danio rerio"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 ZFIN:ZDB-GENE-030912-11 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
InterPro:IPR025766 PROSITE:PS51533 EMBL:CR931764 EMBL:CR855117
IPI:IPI00899757 Ensembl:ENSDART00000127594 Uniprot:E7F4M2
Length = 2011
Score = 296 (109.3 bits), Expect = 5.7e-46, Sum P(4) = 5.7e-46
Identities = 60/141 (42%), Positives = 90/141 (63%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T+ R+K FND S +FL+S++AG G+NL+ NR+++FD
Sbjct: 1620 RNIDYYRLDGSTNALTRKKWAEDFNDISNVRGRLFLISTRAGSLGINLVAANRVIIFDAS 1679
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSS 676
WNP+ D Q+ RV+R GQ K V++YRFL+ GT+EEK+Y RQ++K+ L +V+ Q+Q +
Sbjct: 1680 WNPSYDIQSIFRVYRFGQVKTVYVYRFLAQGTMEEKIYDRQVAKQSLSFRVVDQQQIERH 1739
Query: 677 ATQGNFLSTEDLRDLFTFHDD 697
T +L +L+TF D
Sbjct: 1740 FTMN------ELTELYTFEPD 1754
Score = 199 (75.1 bits), Expect = 5.7e-46, Sum P(4) = 5.7e-46
Identities = 79/231 (34%), Positives = 112/231 (48%)
Query: 131 RLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQRE 190
R L T+E V E + P LVL + EE + LV + + +V L+PHQ +
Sbjct: 1068 REKLRETIE--VKESSQVTCPITTKLVLDEDEETKEP---LVQVHRN--MVTKLKPHQVD 1120
Query: 191 GVQFMFEC----VSGLLNAAGIHGCILADDMGLGKTLQSIALLYT-LLCQGFDGKPMVKK 245
GVQFM++C V + +AG GCILA MGLGKTLQ + LL+T LLC+ K
Sbjct: 1121 GVQFMWDCCCESVRKVEKSAG-SGCILAHCMGLGKTLQVVTLLHTVLLCE----KLNFST 1175
Query: 246 AIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ----VLI 301
A++V P + V NW E +KW G +L E T V Q V+I
Sbjct: 1176 ALVVCPLNTVLNWLNEFEKWQEGLKDEESL-EVTELATVKRPQERAYALQRWQEDGGVMI 1234
Query: 302 VSYETFR-------MHSSKF--SCSESC---DLLICDEAHRLKNDQTLTNR 340
+ YE +R + S K + ++ D +ICDE H LKN+ + ++
Sbjct: 1235 MGYEMYRNLTQGRNIKSKKLKETFQKTLVDPDFVICDEGHVLKNEASAVSK 1285
Score = 133 (51.9 bits), Expect = 5.7e-46, Sum P(4) = 5.7e-46
Identities = 47/176 (26%), Positives = 78/176 (44%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E+ MVNF +LG FR + I G+ +T + ++ +R+ L +
Sbjct: 1304 QNNLIEYHCMVNFIKENLLGSVKEFRNRFINPIQNGQCADSTLVDVRVMKKRAHILYEML 1363
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI-HSKNVKRAISEETKQS--K 456
+ RR L+ LPPK V+ +L+P+Q +LY +++ H V A+ ++ K
Sbjct: 1364 AGCVQRRDYTALTKFLPPKHEYVLAVRLSPIQCKLYRYYLDHFTGVGSALESGKGRAGTK 1423
Query: 457 ILAYITALKKLCNHPKLIY-DTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGD 511
+ L ++ HP + D I N G ED + F S S T D
Sbjct: 1424 LFQDFQMLSRIWTHPWCLQLDYISKENKGYFD-EDSMEEFIASETEESSMSLTSED 1478
Score = 53 (23.7 bits), Expect = 5.7e-46, Sum P(4) = 5.7e-46
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL 551
SGKM +L +L L + DD++++ S +LDL
Sbjct: 1560 SGKMVLLFEIL-RLAEEVDDKVLVFSQSLISLDL 1592
Score = 39 (18.8 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDP 293
+KKA SL + +E++ K+ G Q + +S + VV+ + T+P
Sbjct: 344 LKKAHAALEESLENEFESKGLKFQNGEEQRPSNSQSVENAVVNS--NHTEP 392
Score = 38 (18.4 bits), Expect = 8.4e-20, Sum P(4) = 8.4e-20
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 433 ELYNHFIHSKNVKRAISEETKQSKIL 458
E+Y + +N+K +ET Q ++
Sbjct: 1238 EMYRNLTQGRNIKSKKLKETFQKTLV 1263
Score = 37 (18.1 bits), Expect = 2.8e-29, Sum P(4) = 2.8e-29
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 136 RTVENNVIEENFTLPPGV 153
++VEN V+ N T P V
Sbjct: 378 QSVENAVVNSNHTEPTPV 395
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 406 (148.0 bits), Expect = 7.2e-46, Sum P(2) = 7.2e-46
Identities = 104/278 (37%), Positives = 154/278 (55%)
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSG 481
++ +L PLQ E+Y F+ ++K + E T+ LA + LKKLC+HP+L+
Sbjct: 368 IIWIRLVPLQEEIYRKFVSLDHIKELLME-TRSP--LAELGVLKKLCDHPRLLSARACCL 424
Query: 482 -NPGTTGFEDCIRFFP-PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
N GT +D P++ T D +E SGKM L LL LR +
Sbjct: 425 LNLGTFSAQDGNEGEDSPDV--DHIDQVT--DDTLMEESGKMIFLMDLLKRLRDEGHQTL 480
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLSSKA 598
V S Q L++ +L + R + LR+DGT T + +R+K +N F +K+ VFLL+++
Sbjct: 481 VF-SQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQ-NKDYSVFLLTTQV 538
Query: 599 GGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQ 658
GG GL L R+V+FDP WNPA D QA RV+R GQK+ V +YR ++ GT+EEK+Y+RQ
Sbjct: 539 GGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQ 598
Query: 659 MSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHD 696
+ K+ L I+Q T + S ++LR+LFT D
Sbjct: 599 VFKDSL---IRQT-TGEKKNPFRYFSKQELRELFTIED 632
Score = 164 (62.8 bits), Expect = 7.2e-46, Sum P(2) = 7.2e-46
Identities = 72/242 (29%), Positives = 103/242 (42%)
Query: 187 HQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL----------YTLLCQG 236
HQ+EG+ F++ L G G ILADDMGLGKT+Q IA L + LL
Sbjct: 99 HQKEGIAFLYS-----LYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMP 153
Query: 237 FDG-KPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCS 295
+ VK+ I TP V + K R + + + +++ +
Sbjct: 154 TNLINTWVKEFIKWTPGMRVKTFHGPSKD---ERTRNLNRIQQRNGVIITTYQMLINNWQ 210
Query: 296 SL-----QVLIVSYETF-RMHSSKFSCSESCDLLICDEAHRLKNDQTLTN---RNDLEEF 346
L Q + Y H K S ++S IC A N LT +N+L+E
Sbjct: 211 QLSSFRGQEFVWDYVILDEAHKIKTSSTKSA---ICARAIPASNRLLLTGTPIQNNLQEL 267
Query: 347 FAMVNFTNPG-ILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILR 405
+++ +F G +LG F+ YE I RE AT EK LG + S L A + + LR
Sbjct: 268 WSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLR 327
Query: 406 RT 407
RT
Sbjct: 328 RT 329
Score = 44 (20.5 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQ 679
+++VF + T E+K R SK+ L+++ E +S TQ
Sbjct: 596 RRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTIEDLQNSVTQ 639
Score = 42 (19.8 bits), Expect = 4.6e-33, Sum P(2) = 4.6e-33
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSS 296
R+Q I E+ + G D FTD C+S
Sbjct: 59 RIQKIQ--EALEELAEQGDDEFTDVCNS 84
Score = 38 (18.4 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 331 LKNDQTLTNRNDLEEFFAMVN 351
+K + T DLEE F + N
Sbjct: 25 VKEAKEATKNGDLEEAFKLFN 45
>UNIPROTKB|F1PB65 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 CTD:23132 KO:K10876
OMA:HNLTTPF InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AAEX03012203 EMBL:AAEX03012204
RefSeq:XP_003639804.1 Ensembl:ENSCAFT00000016081 GeneID:476608
KEGG:cfa:476608 Uniprot:F1PB65
Length = 1467
Score = 300 (110.7 bits), Expect = 7.2e-46, Sum P(4) = 7.2e-46
Identities = 56/107 (52%), Positives = 78/107 (72%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T +R++L+N FNDPS ++FLLS++AG G+NLIG NR+V+FD
Sbjct: 778 RNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDAS 837
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
WNP +D QA RV+R GQKK IYR ++ T+E+K+Y RQ+SK+G+
Sbjct: 838 WNPCHDAQAVCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGM 884
Score = 152 (58.6 bits), Expect = 7.2e-46, Sum P(4) = 7.2e-46
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L + +
Sbjct: 496 QNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLL 555
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+ RR + +L HLP K V+ +L+ +Q +LY F+ + S + + A
Sbjct: 556 EGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFM-DRFRDCGSSGWLGLNPLKA 614
Query: 460 YITALKKLCNHPKLIYDTIK 479
+ K + NHP ++Y+ ++
Sbjct: 615 FCVCCK-IWNHPDVLYEALQ 633
Score = 142 (55.0 bits), Expect = 7.2e-46, Sum P(4) = 7.2e-46
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 178 PLLVRFLRPHQREGVQFMFE-CVSGL--LNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
P L R ++PHQ G++F+++ V L + GCILA MGLGKTLQ I+ + L
Sbjct: 265 PQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVL-- 322
Query: 235 QGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
F P K + + P + + NW AE W+
Sbjct: 323 --FRHTP-AKTVLAIVPVNTLQNWLAEFNMWL 351
Score = 79 (32.9 bits), Expect = 7.2e-46, Sum P(4) = 7.2e-46
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 305 ETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR 340
+ FR K C D++ICDE HR+KN Q T++
Sbjct: 442 QEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQ 477
Score = 50 (22.7 bits), Expect = 2.6e-19, Sum P(4) = 2.6e-19
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLR-LDGTTSIS 573
+E S KM +L L+ + D+I++ S TL L + +R P L DG +
Sbjct: 717 LENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIEEFLGKREVPCLPGADGQ-GVQ 774
Query: 574 KRQKLVNHFN-DPSKNEF 590
K + V++F D S F
Sbjct: 775 KWVRNVSYFRLDGSTPAF 792
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 433 (157.5 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 122/389 (31%), Positives = 196/389 (50%)
Query: 322 LLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTAT 381
LL +HR+ T +N+L+E +A+ NF+ PG+LGD +F++ YE I+ G + AT
Sbjct: 531 LLEIPSSHRIIISGTPI-QNNLKELWALFNFSCPGLLGDKNWFKQNYEHYILRGTDKNAT 589
Query: 382 EEEKKLGIERSSELSAKVNQFILRRTNALL------SNHLPPKIIEVVCCKLTPLQSELY 435
+ E+++G + L + F LRR + + ++ L K VV +LT Q +LY
Sbjct: 590 DREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLY 649
Query: 436 NHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIY----DTIKSGNPGT-----T 486
F++S+ V A LA +T LKK+C+HP L+ + + G T
Sbjct: 650 EAFLNSEIVLSAFDGSP-----LAALTILKKICDHPLLLTKRAAEDVLEGMDSTLTQEEA 704
Query: 487 GFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLL--GHLRQRTDDRIVLVSN 544
G + + + T D +LS M +L L+ GH R+++ S
Sbjct: 705 GVAERLAMHIADNVD-TDDFQTKNDSISCKLSFIMSLLENLIPEGH-------RVLIFSQ 756
Query: 545 YTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLN 604
+ L+L Y +LR+DGTT R K V F + +FLL+S+ GG GL
Sbjct: 757 TRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAP-IFLLTSQVGGLGLT 815
Query: 605 LIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
L +R+++ DP WNP+ D Q+ R +R GQ K V +YR +++ T+EEK+Y++Q+ K GL
Sbjct: 816 LTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQVYKGGL 875
Query: 665 QKVIQQEQTDSSATQGNFLSTEDLRDLFT 693
K + + Q + S +DLR+LF+
Sbjct: 876 FKTATEHKE-----QIRYFSQQDLRELFS 899
Score = 133 (51.9 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 55/192 (28%), Positives = 89/192 (46%)
Query: 168 GGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIA 227
G NL T+ + L PHQREG+ +++ L+ G G IL DDMGLGKT+Q +
Sbjct: 362 GLNL-SYTLPGKIATMLYPHQREGLNWLWS-----LHTQG-KGGILGDDMGLGKTMQICS 414
Query: 228 LLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGI 287
L L F K ++K+A++V P +L+ +W E+ + L + TR+ +
Sbjct: 415 FLAGL----FHSK-LIKRALVVAPKTLLPHWMKELAT--------VGLSQMTREYYGTST 461
Query: 288 DSFT-DPCSSLQ---VLIVSYETFRMHSSKFSCSE-----------SCDLLICDEAHRLK 332
+ D LQ +L+ +Y+ R ++ + D +I DE H +K
Sbjct: 462 KAREYDLHHILQGKGILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIK 521
Query: 333 NDQTLTNRNDLE 344
N T ++ LE
Sbjct: 522 NPNTQRAKSLLE 533
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 316 (116.3 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 73/195 (37%), Positives = 111/195 (56%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+++ R+++ S T+ LD+
Sbjct: 476 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQ-GSRVLIFSQMTRLLDILEDY 534
Query: 556 CRERRYPYLRLDGTTSISKRQK--LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL 613
C R Y Y RLDG T +R+K + FN P+ ++F+F+LS++AGG G+NL + ++L
Sbjct: 535 CMWRGYEYCRLDGQTPHEEREKKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVIL 594
Query: 614 FDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQT 673
+D DWNP D QA R R GQKK V ++R ++ T+EE++ +R K L ++ Q Q
Sbjct: 595 YDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ-QG 653
Query: 674 DSSATQGNFLSTEDL 688
Q N L+ E++
Sbjct: 654 RLIDQQSNKLAKEEM 668
Score = 254 (94.5 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 107/340 (31%), Positives = 155/340 (45%)
Query: 172 VPITVDPLLVRF--LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL 229
V V P V+ LR +Q G+ ++ L G++G ILAD+MGLGKTLQ+IALL
Sbjct: 181 VRFEVSPSYVKGGPLRDYQIRGLNWLIS-----LYENGVNG-ILADEMGLGKTLQTIALL 234
Query: 230 -YTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC-ESTRDDVVSGI 287
Y + G MV + P S + NW E K+WV L +C +D + I
Sbjct: 235 GYLKHYRNIPGPHMV-----LVPKSTLYNWMNEFKRWVPS---LRVICFVGDKDARAAFI 286
Query: 288 DSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL---------- 337
P V + SYE S F L+ DEAHR+KN+++
Sbjct: 287 RDEMMP-GEWDVCVTSYEMVIKEKSVFK-KFHWRYLVIDEAHRIKNEKSKLSEIVREFKS 344
Query: 338 TNR---------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG 388
TNR N+L E +A++NF P + A F +++T G ++KL
Sbjct: 345 TNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLG--------DQKL- 395
Query: 389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI 448
+ER L A + F+LRR + LPPK V L+ +Q E + I K++ +
Sbjct: 396 VER---LHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWWYTKILMKDID-VL 451
Query: 449 SEETKQSK--ILAYITALKKLCNHPKLIYDTIKSGNPGTT 486
+ K K +L + L+K CNHP L +D + G P TT
Sbjct: 452 NSAGKMDKMRLLNILMQLRKCCNHPYL-FDGAEPGPPYTT 490
Score = 44 (20.5 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 658 QMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706
+++KE + ++I+ T A++ + L+ ED+ L + +E++E +
Sbjct: 662 KLAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGEKKTAEMNERL 710
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 300 (110.7 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 63/176 (35%), Positives = 103/176 (58%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM L +LL ++++ R+++ S T+ LD+
Sbjct: 422 PYLFDGAEPGPPYTTDTHLVINSGKMVALDKLLPKVQEQ-GSRVLIFSQMTRVLDILEDY 480
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R + Y RLDG T R++ ++ FN P+ ++F+F+LS++AGG G+NL + ++L+D
Sbjct: 481 CMWRGFEYCRLDGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGINLATADVVILYD 540
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
DWNP D QA R R GQ+K V ++R ++ T+EE++ +R K L ++ Q+
Sbjct: 541 SDWNPQVDLQAMDRAHRIGQRKPVKVFRLITDNTVEERIVERAEMKLRLDSIVIQQ 596
Score = 275 (101.9 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 105/326 (32%), Positives = 157/326 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ +M L GI+G ILAD+MGLGKTLQ+IALL Y + G M
Sbjct: 143 LRDYQIRGLNWMIS-----LYENGING-ILADEMGLGKTLQTIALLGYLKHYRNIPGPHM 196
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCE-STRDDVVSGIDSFTDPCSSLQVLI 301
V + P S + NW E K+WV L A+C +D+ + I P V +
Sbjct: 197 V-----LVPKSTLHNWMNEFKRWVP---TLKAVCLIGNKDERAAFIRDVMMP-GEWDVCV 247
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR---------ND 342
SYE S F + L+ DEAHR+KN+++ TNR N+
Sbjct: 248 TSYEMVIREKSVFK-KFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNN 306
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQF 402
L E ++++NF P + A+ F +++T+ + G ++KL +ER L A + F
Sbjct: 307 LHELWSLLNFLLPDVFNSASDFDSWFDTNCL-G--------DQKL-VER---LHAVLRPF 353
Query: 403 ILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAY 460
+LRR A + LPPK + L+ +Q E Y + K++ ++ K K +L
Sbjct: 354 LLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRIL-MKDID-ILNSAGKMDKMRLLNI 411
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTT 486
+ L+K CNHP L +D + G P TT
Sbjct: 412 LMQLRKCCNHPYL-FDGAEPGPPYTT 436
Score = 43 (20.2 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 18/91 (19%), Positives = 40/91 (43%)
Query: 656 QRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYD 715
Q ++ K+ + ++I+ T A++ + L+ ED+ + +E++E M +
Sbjct: 603 QNKLGKDEMLQMIRHGATHVFASKDSELTDEDIDTILERGAKKTAEMNERMQNLGESSLR 662
Query: 716 DGAESIGEGDETNSANKNDQSDQEVTDIGGF 746
+ G ET+ N + +E +G F
Sbjct: 663 NFTVDTG-ATETSLYNFEGEDYREKQKVGVF 692
Score = 37 (18.1 bits), Expect = 6.0e-21, Sum P(3) = 6.0e-21
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 431 QSELYNHFIHSKNVKRAIS 449
Q+EL+ HFI + K S
Sbjct: 61 QTELFAHFIQPASQKSPTS 79
Score = 37 (18.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 483 PGTTGFEDCIRFFPPEMF 500
P +D +FFPP +F
Sbjct: 751 PKQPNIQD-FQFFPPRLF 767
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 400 (145.9 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 99/281 (35%), Positives = 156/281 (55%)
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSG 481
++ +L PLQ E+Y F+ ++K + E T+ LA + LKKLC+HP+L+ + ++
Sbjct: 390 IIWIRLRPLQEEIYRKFVSLDHIKELLME-TRSP--LAELGVLKKLCDHPRLL--SARAR 444
Query: 482 NPGTTGFEDCIRFFPPEMFSGRSGSWTGG-----DGAWVELSGKMHVLARLLGHLRQRTD 536
+ + G ++F G S D +E SGKM L LL LR
Sbjct: 445 HLLSLG---SVKFSVQGENEGEDASDVDHIDHVTDDTLMEESGKMIFLIELLRRLRDEGH 501
Query: 537 DRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLS 595
+V S Q L++ +L + R + LR+DGT T + +R+K ++ F +K+ VFLL+
Sbjct: 502 QTLVF-SQSRQILNIIERLLKNRHFKILRVDGTVTHLVEREKRIHLFQQ-NKDYSVFLLT 559
Query: 596 SKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVY 655
++ GG GL L R+V+FDP WNPA D QA RV+R GQK+ + +YR ++ GT+EEK+Y
Sbjct: 560 TQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENIVVYRLITCGTVEEKIY 619
Query: 656 QRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHD 696
+RQ+ K+ L I+Q D + + ++LR+LFT D
Sbjct: 620 RRQVFKDSL---IRQTTGDKK-NPFRYFTKQELRELFTIED 656
Score = 168 (64.2 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 74/242 (30%), Positives = 107/242 (44%)
Query: 187 HQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY-----TLLCQGFDGKP 241
HQ+EGV F++ L G G ILADDMGLGKT+Q IA L TL+ P
Sbjct: 121 HQKEGVAFLYS-----LYRDGRKGGILADDMGLGKTVQIIAFLSGMFDATLVSHVLLIMP 175
Query: 242 M------VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTD--- 292
+K+ + TP V + K R + + + +++ +
Sbjct: 176 TNLISTWIKEFVKWTPGMRVKTFHGSSKD---ERTRNLNRIQQRNGVIITTYQMLINNWQ 232
Query: 293 PCSSL--QVLIVSYETF-RMHSSKFSCSESCDLLICDEAHRLKNDQTLTN---RNDLEEF 346
SSL Q + Y H K S ++S IC A +N LT +N+L+E
Sbjct: 233 QLSSLNGQEFVWDYVILDEAHKIKTSSTKSA---ICARAVPARNRILLTGTPIQNNLQEL 289
Query: 347 FAMVNFTNPG-ILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILR 405
+++ +F G +LG F+ YE I+ RE AT EK LG++ S L A + LR
Sbjct: 290 WSLFDFACQGSLLGTLKTFKIEYENPIMRAREKDATPGEKALGLKISENLMAIIKSHFLR 349
Query: 406 RT 407
RT
Sbjct: 350 RT 351
Score = 42 (19.8 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 266 VGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296
V R+Q I E+ + G D FTD C+S
Sbjct: 78 VMSRIQKIQ--EALEELAEHGDDEFTDVCNS 106
Score = 41 (19.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQ 679
+++VF + T ++K R +K+ L+++ E +SATQ
Sbjct: 620 RRQVFKDSLIRQTTGDKKNPFRYFTKQELRELFTIEDFQNSATQ 663
Score = 38 (18.4 bits), Expect = 5.8e-32, Sum P(2) = 5.8e-32
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 331 LKNDQTLTNRNDLEEFFAMVN 351
+K + T DLEE F + N
Sbjct: 47 VKEAKEATKNGDLEEAFKLFN 67
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 404 (147.3 bits), Expect = 1.4e-45, Sum P(3) = 1.4e-45
Identities = 102/290 (35%), Positives = 157/290 (54%)
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYD-TIKS 480
+V +L PLQ E+Y F+ ++K + E T+ LA + LKKLC+HP+L+
Sbjct: 368 IVWIRLVPLQEEIYRKFVSLDHIKELLME-TRSP--LAELGVLKKLCDHPRLLSARACHL 424
Query: 481 GNPGTTGFEDCIRFFPPEMFSGRSGSWTG-GDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
N GT F + + GS D A ++ SGKM L LL L+ +
Sbjct: 425 LNLGTVTFS--AEDENEQEDASNMGSIDHLSDNALMQESGKMIFLMALLERLQDEGHQTL 482
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLSSKA 598
V S Q L++ +L + + + LR+DGT T + +R+K + F +K VFLL+++
Sbjct: 483 VF-SQSRQILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQ-NKEYSVFLLTTQV 540
Query: 599 GGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQ 658
GG GL L +R+V+FDP WNPA D QA RV+R GQK+ V +YR ++ GT+EEK+Y+RQ
Sbjct: 541 GGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQ 600
Query: 659 MSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHC 708
+ K+ L I+Q D + + ++L++LFT D + S + C
Sbjct: 601 VFKDSL---IRQTTGDKK-NPFRYFTKQELKELFTVGDLLNSATQMQLQC 646
Score = 173 (66.0 bits), Expect = 1.4e-45, Sum P(3) = 1.4e-45
Identities = 67/239 (28%), Positives = 103/239 (43%)
Query: 187 HQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV--K 244
HQ+EG+ F++ L G G ILADDMGLGKT+Q IA L + ++
Sbjct: 99 HQKEGIAFLYS-----LYKNGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMP 153
Query: 245 KAIIVTPTSLVSNWEA--EIKKWVGG----RVQLIALCESTRDDVVSGIDSFTDPCSSL- 297
+I T + W +K + G R++ + + V++ + L
Sbjct: 154 TNLINTWVKEFAKWTPGMRVKTFHGSSKNERIRNLTRIQQRNGVVITTYQMLLNNWQQLA 213
Query: 298 ----QVLIVSYETF-RMHSSKFSCSESCDLLICDEAHRLKNDQTLTN---RNDLEEFFAM 349
Q + Y H K + ++S +C A N LT +N+L+E +++
Sbjct: 214 SFNGQAFVWDYVILDEAHKIKSASTKSA---VCARAVPASNRLLLTGTPIQNNLQELWSL 270
Query: 350 VNFTNPG-ILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRT 407
+F G +LG F+ YE II RE AT EK LG + S L + + LRRT
Sbjct: 271 FDFACQGSLLGTLKTFKMEYENPIIRAREKDATPGEKALGFKMSENLMEIIKPYFLRRT 329
Score = 37 (18.1 bits), Expect = 1.4e-45, Sum P(3) = 1.4e-45
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 758 SSEKQLGTPLEEDLNNWGHHFYSMSVPDAI 787
SS K ++ +N F+S +PD +
Sbjct: 1039 SSVKHFDASTPQNDSNPSRRFFSPKIPDDV 1068
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 324 (119.1 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 75/183 (40%), Positives = 105/183 (57%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM VL +LL L+ + R+++ S ++ LD+
Sbjct: 467 PYLFEGAEPGPPYTTDEHLVYNSGKMVVLDKLLKRLKAQ-GSRVLIFSQMSRVLDILEDY 525
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y R+DG T+ R ++ +N P +FVFLL+++AGG G+NL + ++LFD
Sbjct: 526 CVFREYKYSRIDGGTAHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTTADIVILFD 585
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK-VIQQEQTD 674
DWNP D QA R R GQ K+V++YRFL TIEEKV +R K L + VIQQ +
Sbjct: 586 SDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTIEEKVLERAAQKLHLDRLVIQQGRAQ 645
Query: 675 SSA 677
+A
Sbjct: 646 VAA 648
Score = 245 (91.3 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 91/328 (27%), Positives = 149/328 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
+R +Q G+ ++ L+ GI G ILAD+MGLGKTLQ+I+ L Y G G +
Sbjct: 186 MRDYQIAGLNWLIS-----LHENGISG-ILADEMGLGKTLQTISFLGYLRHIMGITGPHL 239
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
V + P S + NW+ E KW V ++ L + + + D S V I
Sbjct: 240 V-----IVPKSTLDNWKREFGKWTP-EVNVLVLQGAKEERAALIAERLVD--ESFDVCIT 291
Query: 303 SYETF---RMHSSKFSCSESCDLLICDEAHRLKNDQT-------LTN------------R 340
SYE + H KF+ + +I DEAHR+KN+++ L N +
Sbjct: 292 SYEMILREKSHLKKFAW----EYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQ 347
Query: 341 NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVN 400
N++ E +A++NF P + GD+ F +++ G++ ++ L +
Sbjct: 348 NNIHELWALLNFLLPDVFGDSEAFDQWFSGE---GQDSDTVVQQ----------LHRVLR 394
Query: 401 QFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK--NVKRAISEETKQSKIL 458
F+LRR A + L PK + K+T +Q Y + V A + ++++L
Sbjct: 395 PFLLRRVKADVEKSLLPKKEVNLYLKMTEMQRTWYQKILEKDIDAVNGANGKRESKTRLL 454
Query: 459 AYITALKKLCNHPKLIYDTIKSGNPGTT 486
+ L+K CNHP L ++ + G P TT
Sbjct: 455 NIVMQLRKCCNHPYL-FEGAEPGPPYTT 481
Score = 48 (22.0 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 32/126 (25%), Positives = 49/126 (38%)
Query: 646 STGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTED-LRD--LFTFH----DDV 698
S T +KVY + + L + + + DS G F + D +RD LF F
Sbjct: 963 SVSTTNKKVYTEEEDRFLLVQ-LDKHGIDSD---GIFETIRDEIRDSALFRFDWFFLSRT 1018
Query: 699 RSEIHEN---MHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHK 755
+E+ + T + +DD + G N K D D+E D G+A K
Sbjct: 1019 PTELSRRATTLLTTIVKEFDDMNTTKGTNGTANGRAKRDVDDEE-NDEDSILGMAPPKKK 1077
Query: 756 LKSSEK 761
K+ K
Sbjct: 1078 AKNGVK 1083
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 403 (146.9 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 100/281 (35%), Positives = 155/281 (55%)
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSG 481
++ +L PLQ E+Y F+ ++K + E T+ LA + LKKLC+HP+L+ + ++
Sbjct: 368 IIWIRLVPLQEEIYRKFVSLDHIKELLME-TRSP--LAELGVLKKLCDHPRLL--SARAC 422
Query: 482 NPGTTGFEDCIRFFPPEMFSGRSGSWTG-----GDGAWVELSGKMHVLARLLGHLRQRTD 536
G +F + G S D +E SGKM L LL LR
Sbjct: 423 GLLNLG---AAKFSVQDEIEGEDSSDVDHIDQISDDTLMEESGKMLFLMDLLKKLRDEGH 479
Query: 537 DRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLS 595
+V S + L++ +L + R + LR+DGT T + +R+K ++ F +K+ VFLL+
Sbjct: 480 QTLVF-SQSRRILNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQ-NKDYSVFLLT 537
Query: 596 SKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVY 655
++ GG GL L +R+V+FDP WNPA D QA RV+R GQK+ V +YR ++ GT+EEK+Y
Sbjct: 538 TQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 597
Query: 656 QRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHD 696
+RQ+ K+ L I+Q D + S ++LR+LFT D
Sbjct: 598 RRQVFKDSL---IRQTTGDKK-NPFRYFSKQELRELFTIED 634
Score = 163 (62.4 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 70/242 (28%), Positives = 105/242 (43%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L +Q+EG+ F++ L G G ILADDMGLGKT+Q IA L + ++
Sbjct: 96 LYEYQKEGIAFLYS-----LYRDGRRGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLL 150
Query: 244 --KKAIIVTPTSLVSNWEA--EIKKWVGG----RVQLIALCESTRDDVVSGIDSFTD--- 292
++I T W +K + G R + + + +++ +
Sbjct: 151 IMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRNLCRIQQRNGVIITTYQMLINNWQ 210
Query: 293 PCSSL--QVLIVSYETF-RMHSSKFSCSESCDLLICDEAHRLKNDQTLTN---RNDLEEF 346
SSL Q + Y H K S ++S IC A N LT +N+L+E
Sbjct: 211 QLSSLNGQEFLWDYVILDEAHKIKSSSTKSA---ICARAIPASNRILLTGTPIQNNLQEL 267
Query: 347 FAMVNFTNPG-ILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILR 405
+++ +F G +LG F+ YE I RE AT EK LG + S L A + + LR
Sbjct: 268 WSLFDFACQGSLLGTLRTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLR 327
Query: 406 RT 407
RT
Sbjct: 328 RT 329
Score = 47 (21.6 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 860 ENSAKFSLSASSQPKSMRTSLKGAIKPKLSFGNQLPL 896
E+ ++ +LS+ ++ + TS GA+ + S G+ PL
Sbjct: 1136 EDPSRETLSSENKSSQLSTSKPGALAQETSPGDPEPL 1172
Score = 44 (20.5 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQ 679
+++VF + T ++K R SK+ L+++ E +SATQ
Sbjct: 598 RRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFTIEDFQNSATQ 641
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 396 (144.5 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 110/331 (33%), Positives = 171/331 (51%)
Query: 380 ATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI 439
A E +LG E++ A + F L R N L +V +L PLQ E+Y F+
Sbjct: 339 ADNPEARLG-EKNPAGEAICDMFSLARKNDL-----------IVWIRLLPLQEEIYRKFV 386
Query: 440 HSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYD-TIKSGNPGTTGFEDCIRFFPPE 498
++K + E T+ LA + LKKLC+HP+L+ + N GT F +
Sbjct: 387 SLDHIKELLME-TRSP--LAELGVLKKLCDHPRLLSARACRLLNLGTATFSAQDENEQED 443
Query: 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE 558
+ + S D ++ SGKM L LL L+ +V S + L++ +L +
Sbjct: 444 VSNMNSIDHLP-DKTLIQESGKMIFLMSLLERLQDEGHQTLVF-SQSIKILNIIERLLKN 501
Query: 559 RRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
+ + LR+DGT T + +R+K + F +K VFLL+++ GG GL L R+V+FDP
Sbjct: 502 KHFKTLRIDGTVTHLWEREKRIQLFQQ-NKEYSVFLLTTQVGGVGLTLTAATRVVIFDPS 560
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSA 677
WNPA D QA RV+R GQK+ V +YR ++ GT+EEK+Y+RQ+ K+ L I+Q T
Sbjct: 561 WNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSL---IRQT-TGEKK 616
Query: 678 TQGNFLSTEDLRDLFTFHDDVRSEIHENMHC 708
+ + ++L++LFT D +S + C
Sbjct: 617 NPFRYFTKQELKELFTVGDLQKSATQMQLQC 647
Score = 170 (64.9 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 67/239 (28%), Positives = 104/239 (43%)
Query: 187 HQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV--K 244
HQ+EG+ F++ L G G ILADDMGLGKT+Q IA L + ++
Sbjct: 100 HQKEGIAFLYS-----LYKDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMP 154
Query: 245 KAIIVTPTSLVSNWEA--EIKKWVGG----RVQLIALCESTRDDVVSGIDSFTDPCSSL- 297
+I T + + W +K + G R + + + V++ + L
Sbjct: 155 TNLINTWVNEFAKWTPGMRVKTFHGSSKSERTRSLTRIQQRNGVVITTYQMLLNNWQQLA 214
Query: 298 ----QVLIVSYETF-RMHSSKFSCSESCDLLICDEAHRLKNDQTLTN---RNDLEEFFAM 349
Q + Y H K + ++S +C A N LT +N+L+E +++
Sbjct: 215 SFNGQAFVWDYVILDEAHKIKSASTKSA---VCARAIPASNRLLLTGTPVQNNLQELWSL 271
Query: 350 VNFTNPG-ILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRT 407
+F G +LG F+ YE II RE AT EK LG++ S L + + LRRT
Sbjct: 272 FDFACQGSLLGTLKTFKMEYEHPIIRAREKDATPGEKALGLKISENLMEIIKPYFLRRT 330
Score = 38 (18.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 22/88 (25%), Positives = 36/88 (40%)
Query: 650 IEEKVYQRQ-MSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIH--ENM 706
+E+ RQ +S + L+ V +++ S A S L + D SE+ +
Sbjct: 954 LEDSADTRQNLSSKFLEHVEKEKSLQSPAANSRAKSALTLSLDSSPKSDEESEVISVKTK 1013
Query: 707 HCTR---CQNYDDGAESIGEGDETNSAN 731
TR + D+ E +G TNS N
Sbjct: 1014 SKTRRILSDDEDEDEEDAFKGSHTNSIN 1041
>UNIPROTKB|E1BEK4 [details] [associations]
symbol:Bt.109773 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 OMA:HNLTTPF InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
EMBL:DAAA02054392 EMBL:DAAA02054393 EMBL:DAAA02054394
IPI:IPI00841842 Ensembl:ENSBTAT00000045730 Uniprot:E1BEK4
Length = 1470
Score = 300 (110.7 bits), Expect = 3.9e-45, Sum P(4) = 3.9e-45
Identities = 56/107 (52%), Positives = 78/107 (72%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T +R++L+N FNDPS ++FLLS++AG G+NLIG NR+V+FD
Sbjct: 781 RNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDAS 840
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
WNP +D QA RV+R GQKK IYR ++ T+E+K+Y RQ+SK+G+
Sbjct: 841 WNPCHDAQAVCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGM 887
Score = 154 (59.3 bits), Expect = 3.9e-45, Sum P(4) = 3.9e-45
Identities = 40/143 (27%), Positives = 73/143 (51%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L + +
Sbjct: 499 QNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLL 558
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+ RR + +L HLP K V+ +L+ +Q +LY F+ + S + + A
Sbjct: 559 ELFLSRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFM-DRFRDCGNSGWLGLNPLKA 617
Query: 460 YITALKKLCNHPKLIYDTIKSGN 482
+ K + NHP ++Y+ ++ N
Sbjct: 618 FCVCCK-IWNHPDVLYEALQKEN 639
Score = 142 (55.0 bits), Expect = 3.9e-45, Sum P(4) = 3.9e-45
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 178 PLLVRFLRPHQREGVQFMFE-CVSGL--LNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
P L R ++PHQ G++F+++ V L + GCILA MGLGKTLQ I+ + L
Sbjct: 266 PQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVL-- 323
Query: 235 QGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
F P K + + P + + NW AE W+
Sbjct: 324 --FRHTP-AKTVLAIVPVNTLQNWLAEFNMWL 352
Score = 70 (29.7 bits), Expect = 3.9e-45, Sum P(4) = 3.9e-45
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 313 KFSCSESCDLLICDEAHRLKNDQTLTNR 340
K C D++ICDE HR+KN Q T++
Sbjct: 453 KALCRPGPDVVICDEGHRIKNCQASTSQ 480
Score = 46 (21.3 bits), Expect = 3.3e-18, Sum P(4) = 3.3e-18
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+E S KM +L L+ + D+I++ S TL L + +R P L + K
Sbjct: 720 LENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIEEFLGKREVPCLPGAEGQGVQK 778
Query: 575 RQKLVNHFN-DPSKNEF 590
+ V++F D S F
Sbjct: 779 WIRNVSYFRLDGSTPAF 795
>UNIPROTKB|F1RPI9 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:CU928419
EMBL:CU693469 EMBL:CU928840 EMBL:FP102832
Ensembl:ENSSSCT00000013595 OMA:GPDIVIC ArrayExpress:F1RPI9
Uniprot:F1RPI9
Length = 988
Score = 299 (110.3 bits), Expect = 5.1e-45, Sum P(4) = 5.1e-45
Identities = 58/142 (40%), Positives = 91/142 (64%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T+ R+K FND + +F++S+KAG G+NL+ NR+++FD
Sbjct: 800 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDAS 859
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSS 676
WNP+ D Q+ RV+R GQ K V++YRFL+ GT+E+K+Y RQ++K+ L +V+ Q+Q +
Sbjct: 860 WNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERH 919
Query: 677 ATQGNFLSTEDLRDLFTFHDDV 698
T +L +L+TF D+
Sbjct: 920 FTMN------ELTELYTFEPDL 935
Score = 178 (67.7 bits), Expect = 5.1e-45, Sum P(4) = 5.1e-45
Identities = 69/219 (31%), Positives = 104/219 (47%)
Query: 151 PGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFEC----VSGLLNAA 206
P LVL + EE + LV + + ++++ L+PHQ +GVQFM++C V +
Sbjct: 251 PITTKLVLDEDEETKEP---LVQVHRN-MVIK-LKPHQVDGVQFMWDCCCESVKKTKKSP 305
Query: 207 GIHGCILADDMGLGKTLQSIALLYT-LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265
G GCILA MGLGKTLQ ++ L+T LLC D A++V P + NW E +KW
Sbjct: 306 G-SGCILAHCMGLGKTLQVVSFLHTVLLCDKLD----FSTALVVCPLNTALNWMNEFEKW 360
Query: 266 VGGRVQLIALCESTRDDVVSGIDSFTDPCSS---LQ-------VLIVSYETFR------- 308
G L + + + VS + + P LQ V+I+ YE +R
Sbjct: 361 QEG------LKDDEKLEKVSELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRN 414
Query: 309 MHSSKFS-------CSESCDLLICDEAHRLKNDQTLTNR 340
+ S K D ++CDE H LKN+ + ++
Sbjct: 415 VKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSK 453
Score = 125 (49.1 bits), Expect = 5.1e-45, Sum P(4) = 5.1e-45
Identities = 40/150 (26%), Positives = 71/150 (47%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E+ MVNF +LG FR + I G+ +T + ++ +R+ L +
Sbjct: 472 QNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEML 531
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI-HSKNVKRAISEETKQ---S 455
+ R+ L+ LPPK V+ ++TP+Q +LY +++ H V + SE + +
Sbjct: 532 AGCVQRKDYTALTKFLPPKHEYVLAVRMTPIQCKLYQYYLDHLTGVGNS-SEGGRGKAGA 590
Query: 456 KILAYITALKKLCNHPKLIY-DTIKSGNPG 484
K+ L ++ HP + D I N G
Sbjct: 591 KLFQDFQMLSRIWTHPWCLQLDYISKENKG 620
Score = 53 (23.7 bits), Expect = 5.1e-45, Sum P(4) = 5.1e-45
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 508 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL---FAQLC-RER 559
T D +E SGKM +L +L + + D++++ S +LDL F +L RE+
Sbjct: 728 TDADAEVLEHSGKMVLLFEIL-RMAEEIGDKVLVFSQSLISLDLIEDFLELASREK 782
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 501 (181.4 bits), Expect = 2.0e-44, P = 2.0e-44
Identities = 162/531 (30%), Positives = 255/531 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N CILAD+MGLGKT+QSI LY + +G G P
Sbjct: 154 LREYQLEGVNWL------LFNWYNTRNCILADEMGLGKTIQSITFLYEIYLKGIHG-PF- 205
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + F DP +V+ S
Sbjct: 206 ---LVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG--RVIKGS 260
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKND--QTLTNRN--DLEEFFAM 349
Y+ TF M + C E ++ ++ DEAHRLKN + L DLE +
Sbjct: 261 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 318
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE----LSAKVNQFILR 405
+ + + E GR P+ T ++ G ++ E L A + +LR
Sbjct: 319 TGTPLQNTVEELFSLLHFLEP----GRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLR 374
Query: 406 RTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI---LAYIT 462
R + +L PK ++ +LT +Q + Y + KN +S+ Q+ + L +
Sbjct: 375 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFA-FLSKGGGQANVPNLLNTMM 432
Query: 463 ALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMH 522
L+K CNHP LI G E+ I E + S + A ++ +GK+
Sbjct: 433 ELRKCCNHPYLI-----------NGAEEKILEEFKETHNADSPDFQLQ--AMIQAAGKLV 479
Query: 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHF 582
++ +LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++ F
Sbjct: 480 LIDKLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 538
Query: 583 NDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642
+ P + FVFLL ++AGG G+NL + ++FD DWNP ND QA AR R GQ K V IY
Sbjct: 539 SRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIY 598
Query: 643 RFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTD-SSATQG-NFLSTEDLRDL 691
R ++ + E +++ + K GL K + Q + +AT G LS +++ DL
Sbjct: 599 RLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 649
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 506 (183.2 bits), Expect = 2.0e-44, P = 2.0e-44
Identities = 162/528 (30%), Positives = 253/528 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N + CILAD+MGLGKT+QSI LY + +G G P
Sbjct: 958 LREYQLEGVNWL------LFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHG-PF- 1009
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + F DP +V+ S
Sbjct: 1010 ---LVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG--RVIKGS 1064
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKND--QTLTNRN--DLEEFFAM 349
Y+ TF M + C E ++ ++ DEAHRLKN + L DLE +
Sbjct: 1065 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 1122
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERS-SELSAKVNQFILRRTN 408
+ + + E S E T +E L E +L A + +LRR
Sbjct: 1123 TGTPLQNTVEELFSLLHFLEPSRFPS-ETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK 1181
Query: 409 ALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI---LAYITALK 465
+ +L PK ++ +LT +Q + Y + KN +S+ Q+ + L + L+
Sbjct: 1182 EDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFT-FLSKGGGQANVPNLLNTMMELR 1239
Query: 466 KLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLA 525
K CNHP LI G E+ I E + S + A ++ +GK+ ++
Sbjct: 1240 KCCNHPYLI-----------NGAEEKILEEFKETHNAESPDFQLQ--AMIQAAGKLVLID 1286
Query: 526 RLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDP 585
+LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++ F+ P
Sbjct: 1287 KLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKP 1345
Query: 586 SKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFL 645
+ FVFLL ++AGG G+NL + ++FD DWNP ND QA AR R GQ K V IYR +
Sbjct: 1346 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLI 1405
Query: 646 STGTIEEKVYQRQMSKEGLQKVIQQEQTD-SSATQG-NFLSTEDLRDL 691
+ + E +++ + K GL K + Q + +AT G LS +++ DL
Sbjct: 1406 TRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1453
>ZFIN|ZDB-GENE-030131-3097 [details] [associations]
symbol:rad54l2 "RAD54-like 2 (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-3097 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
CTD:23132 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX465868
IPI:IPI00481713 RefSeq:XP_687332.3 UniGene:Dr.141427
UniGene:Dr.159400 UniGene:Dr.1755 Ensembl:ENSDART00000091716
Ensembl:ENSDART00000147975 GeneID:558947 KEGG:dre:558947
NextBio:20882710 Uniprot:F1R3L6
Length = 1437
Score = 307 (113.1 bits), Expect = 2.1e-44, Sum P(5) = 2.1e-44
Identities = 57/107 (53%), Positives = 80/107 (74%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSKNE-FVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+TS S+R++L+N FNDP+ + +VFLLS++AG G+NLIG NR+V+FD
Sbjct: 775 RNINYYRLDGSTSASERERLINQFNDPANTQAWVFLLSTRAGCLGVNLIGANRVVVFDAS 834
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
WNP +D QA RV+R GQ+K IYR + T+E+K+Y RQ+SK+G+
Sbjct: 835 WNPCHDAQAVCRVYRYGQRKPCHIYRLVCDFTLEKKIYDRQVSKQGM 881
Score = 158 (60.7 bits), Expect = 2.1e-44, Sum P(5) = 2.1e-44
Identities = 41/143 (28%), Positives = 74/143 (51%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L + +
Sbjct: 506 QNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVQLMRYRSHVLHSLL 565
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+ RR + +L + LPPK V+ +L+ LQ LY F++ + S + + A
Sbjct: 566 EGFVQRRGHDVLRHQLPPKEEHVILVRLSRLQRALYTEFMNRFR-EAGNSGWLGLNPLKA 624
Query: 460 YITALKKLCNHPKLIYDTIKSGN 482
+ K + NHP ++Y+ ++ N
Sbjct: 625 FCVCCK-IWNHPDVLYEALQKEN 646
Score = 138 (53.6 bits), Expect = 2.1e-44, Sum P(5) = 2.1e-44
Identities = 35/93 (37%), Positives = 51/93 (54%)
Query: 178 PLLVRFLRPHQREGVQFMFE-CVSGL---LNAAGIHGCILADDMGLGKTLQSIALLYTLL 233
P L R ++PHQ G++F+++ V L ++G GCILA MGLGKTLQ I+ + LL
Sbjct: 275 PQLARAVKPHQIGGIRFLYDNLVESLERYKTSSGF-GCILAHSMGLGKTLQVISFIDVLL 333
Query: 234 CQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
G K + + P + + NW AE W+
Sbjct: 334 RH--TG---AKTVLAIVPVNTLQNWLAEFNLWL 361
Score = 60 (26.2 bits), Expect = 2.1e-44, Sum P(5) = 2.1e-44
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 321 DLLICDEAHRLKNDQTLTNR 340
D++ICDE HR+KN T++
Sbjct: 468 DVVICDEGHRIKNCHASTSQ 487
Score = 38 (18.4 bits), Expect = 2.1e-44, Sum P(5) = 2.1e-44
Identities = 12/56 (21%), Positives = 19/56 (33%)
Query: 831 HITNPKPKLDQRXXXXXXXXXXXXDVPSLENSAKFSLSASSQPKSMRTSLKGAIKP 886
H P L + S +S + S+SS P S +S ++ P
Sbjct: 1299 HAMFPTEPLGLGVSNSTLSSTCSTNTTSSSHSGMLASSSSSVPSSSLSSTSSSLPP 1354
>WB|WBGene00007761 [details] [associations]
symbol:rad-26 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:Z54236 PIR:T19508
RefSeq:NP_501545.1 ProteinModelPortal:Q18241 SMR:Q18241
DIP:DIP-26472N IntAct:Q18241 MINT:MINT-1047515 STRING:Q18241
PaxDb:Q18241 EnsemblMetazoa:C27B7.4 GeneID:177706
KEGG:cel:CELE_C27B7.4 UCSC:C27B7.4 CTD:177706 WormBase:C27B7.4
HOGENOM:HOG000022111 InParanoid:Q18241 OMA:MERSIFN NextBio:898020
Uniprot:Q18241
Length = 1274
Score = 294 (108.6 bits), Expect = 2.7e-44, Sum P(4) = 2.7e-44
Identities = 55/124 (44%), Positives = 85/124 (68%)
Query: 558 ERRYPYLRLDGTTSISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDP 616
E+ YLRLDGTTS + R+KL+N FN +P + +FL+S++AG G+NL+ NR ++ D
Sbjct: 829 EKNRNYLRLDGTTSGADREKLINRFNSEPGLS--LFLISTRAGSLGINLVSANRCIIIDA 886
Query: 617 DWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDS 675
WNP +D QA RV+R GQ+K+ F+YR + ++E ++ RQ+SK GLQ +V+ Q D+
Sbjct: 887 CWNPCHDAQAVCRVYRYGQQKKTFVYRLIMDNSMERSIFNRQISKHGLQQRVVDDAQVDA 946
Query: 676 SATQ 679
+ +Q
Sbjct: 947 NISQ 950
Score = 162 (62.1 bits), Expect = 2.7e-44, Sum P(4) = 2.7e-44
Identities = 40/141 (28%), Positives = 78/141 (55%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E+F M++F P LG F +E I G+ ++ ++ K+ ++R+ L V
Sbjct: 496 QNNLLEYFCMIDFVRPKYLGTRKSFIDRFEKPIKNGQCVDSSPDDVKIALQRTHVLVELV 555
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI-HSKNVKRAISEETKQSKIL 458
F+ RRT+ LL LP V+ + + +Q +LY +F+ +KN + A + + + ++
Sbjct: 556 KGFVQRRTHHLLKKILPESKEYVLLLRKSQIQRQLYRNFVLWAKN-EIAANNDAVFNPLM 614
Query: 459 AYITALKKLCNHPKLIYDTIK 479
A+ +A K+ NHP ++Y ++
Sbjct: 615 AF-SACSKIWNHPDILYRLVE 634
Score = 142 (55.0 bits), Expect = 2.7e-44, Sum P(4) = 2.7e-44
Identities = 44/144 (30%), Positives = 69/144 (47%)
Query: 180 LVRFLRPHQREGVQFMFE-CVSGL--LNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236
L L+PHQ G++FM++ + L + GCILA MGLGKT+Q I L
Sbjct: 252 LTHVLQPHQLGGIRFMYDNTIESLGEYKKSDGFGCILAHSMGLGKTIQVITFSEIFL--- 308
Query: 237 FDGKPMVKKAIIVTPTSLVSNWEAEIKKWV------GGRVQ-----LIALCESTRDDVVS 285
KK +++ P + + NW +E KW+ G R++ L+ T D V+
Sbjct: 309 --RATKAKKVLVIVPINTIQNWYSEYDKWIPKFSDTGDRIRSFEVFLLGDGVKTFDQRVN 366
Query: 286 GIDSFTDPCSSLQVLIVSYETFRM 309
I+ + D V++V Y+ FR+
Sbjct: 367 LIEQW-DQTGG--VMLVGYDMFRL 387
Score = 57 (25.1 bits), Expect = 2.7e-44, Sum P(4) = 2.7e-44
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 321 DLLICDEAHRLKN 333
DL++CDE H++KN
Sbjct: 458 DLVVCDEGHKIKN 470
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 315 (115.9 bits), Expect = 2.7e-44, Sum P(2) = 2.7e-44
Identities = 79/202 (39%), Positives = 112/202 (55%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
V SGK +L RLL L+ + RI+L S T+ +DL Y YLRLDG+T +
Sbjct: 691 VRASGKFELLDRLLPKLK-KAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQ 749
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D+QA R R G
Sbjct: 750 RGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIG 809
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSSAT-QGNFLSTEDLRDLF 692
QKK V ++ +S G+IEE + +R K G+ KVIQ ++++T Q E++
Sbjct: 810 QKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMSKG 869
Query: 693 T--FHDDVRSEIHENMHCTRCQ 712
T +DV SE N R +
Sbjct: 870 TSSLGEDVPSEREINRLAARTE 891
Score = 242 (90.2 bits), Expect = 2.7e-44, Sum P(2) = 2.7e-44
Identities = 94/325 (28%), Positives = 143/325 (44%)
Query: 174 ITVDPLLVRF--LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
+T P L++ LR +Q EG+Q+M + N ILAD+MGLGKT+Q+IAL+
Sbjct: 374 VTKQPSLLQGGELRSYQLEGLQWMVSLYNNDYNG------ILADEMGLGKTIQTIALIAY 427
Query: 232 LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGIDSF 290
LL + K + +I+ P +++ NWE E W L + R ++ + I
Sbjct: 428 LL----ESKDLHGPHLILAPKAVLPNWENEFALWAPSISAFLYDGSKEKRTEIRARIAG- 482
Query: 291 TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT-------------- 336
VLI Y+ M F + +I DE HRLKN +
Sbjct: 483 ----GKFNVLITHYDLI-MRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKR 537
Query: 337 ---LTN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSII-CGREPTATEEEKKLGI 389
LT +N L+E ++++NF P I F ++ T CG + T+EE+ L I
Sbjct: 538 RLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECG-SASLTDEEELLII 596
Query: 390 ERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAIS 449
R L + F+LRR + + LP K ++ C ++ Q Y V +
Sbjct: 597 NR---LHHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRV--GLH 651
Query: 450 EETKQSKILAYITA-LKKLCNHPKL 473
+SK L +T L+K CNHP L
Sbjct: 652 SGNGKSKSLQNLTMQLRKCCNHPYL 676
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 499 (180.7 bits), Expect = 3.4e-44, P = 3.4e-44
Identities = 156/519 (30%), Positives = 242/519 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q +G+++M + LN ILAD+MGLGKT+Q+IA + L+ + K
Sbjct: 366 LKPYQIKGLEWMVSLFNNNLNG------ILADEMGLGKTIQTIAFITYLM----EIKKTS 415
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC--ESTRDDVVSGIDSFTDPCSSLQVLI 301
+++ P S V NW+ E KW V LIA + TR I S VL+
Sbjct: 416 GPFLVIVPLSTVPNWQNEFDKWAAN-VHLIAYKGPKETRKVFEPIIKS-----GKFNVLL 469
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTNR---------------N 341
++E + + +I DE HRLKN + L R N
Sbjct: 470 TTFE-YVIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQN 528
Query: 342 DLEEFFAMVNFTNPGILGDAAYFRRYYETSIIC-GREPTATEEEKKLGIERSSELSAKVN 400
L E +A++NF P I + F +++ G + T+EE L I R L +
Sbjct: 529 KLPELWALLNFLLPSIFSSCSTFEQWFNAPFATTGEKVELTQEETMLIIRR---LHKVLR 585
Query: 401 QFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAY 460
F+LRR + + LP K+ VV C ++ LQ LY H K + T +
Sbjct: 586 PFLLRRLKKEVESELPDKMEFVVRCDMSALQKVLYKHM--QKGLLLDGKTNTGSKSLRNT 643
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
+ L+KLCNHP +++ ++ E C F+ S +SGK
Sbjct: 644 MIHLRKLCNHP-FLFENVE---------ESCRNFWDARFISAVD---------LYRVSGK 684
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+ +L+R+L L Q T R+++ T + + YLRLDG+T +R L++
Sbjct: 685 LELLSRILPKL-QATGHRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGSTKPDERGALLD 743
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN P+ F+F+LS++AGG GLNL + +++FD DWNP D QA R R GQK V
Sbjct: 744 KFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKAEVR 803
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQEQTDSSAT 678
++R ++ ++EEK+ K + +KVIQ + D+ +T
Sbjct: 804 VFRLITANSVEEKILAAARYKLNVDEKVIQAGKFDNRST 842
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 507 (183.5 bits), Expect = 3.4e-44, Sum P(2) = 3.4e-44
Identities = 158/524 (30%), Positives = 249/524 (47%)
Query: 177 DPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236
DP L+ L+P+Q +G+++M + LN ILAD+MGLGKT+Q+I+L+ L+
Sbjct: 528 DPNLL--LKPYQIKGLEWMVSLYNNNLNG------ILADEMGLGKTIQTISLVTYLMEVK 579
Query: 237 FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296
+ P +++ P S +SNW+ E KW +I + T+D ++ +
Sbjct: 580 QNNGPY----LVIVPLSTLSNWQNEFAKWAPSVTTIIY--KGTKD-ARRRVEGQIRK-GA 631
Query: 297 LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT-----------------LTN 339
VL+ +YE + + +I DE HRLKN LT
Sbjct: 632 FNVLMTTYE-YVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTG 690
Query: 340 ---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIIC-GREPTATEEEKKLGIERSSEL 395
+N L E +A++NF P I F +++ G + +EE L I R L
Sbjct: 691 TPLQNKLPELWALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLIIRR---L 747
Query: 396 SAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQS 455
+ F+LRR + + LP K V+ C + LQ +Y H + +S +
Sbjct: 748 HKVLRPFLLRRLKKEVESQLPDKTEYVIKCDQSALQKVIYRHMQKGLLLDAKMSSGARS- 806
Query: 456 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWV 515
++ + L+KLCNHP L P ED R + + G D +
Sbjct: 807 -LMNTVVHLRKLCNHPFLF--------PN---IEDSCRAY------WKVNEVNGTD--LM 846
Query: 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKR 575
++GK+ +L R+L L+ T RI++ T +++F RRY YLRLDG+T +R
Sbjct: 847 RVAGKLELLDRILPKLKA-TGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDER 905
Query: 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQ 635
L+ FN P+ + F+F+LS++AGG GLNL + +++FD DWNP D QA R R GQ
Sbjct: 906 GDLLTQFNAPNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQ 965
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQEQTDSSAT 678
KK V + R ++ ++EEK+ K + +KVIQ + D +T
Sbjct: 966 KKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGKFDQRST 1009
Score = 43 (20.2 bits), Expect = 3.4e-44, Sum P(2) = 3.4e-44
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 885 KPKLSFGNQLPLKRFSPDNVEHDDD 909
+P S P +RFS ++ E +DD
Sbjct: 1449 EPASSRRKSRPTRRFSNEDEEEEDD 1473
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 503 (182.1 bits), Expect = 4.3e-44, P = 4.3e-44
Identities = 161/528 (30%), Positives = 253/528 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N + CILAD+MGLGKT+QSI LY + +G G P
Sbjct: 957 LREYQLEGVNWL------LFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHG-PF- 1008
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + F DP +V+ S
Sbjct: 1009 ---LVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG--RVIKGS 1063
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKND--QTLTNRN--DLEEFFAM 349
Y+ TF M + C E ++ ++ DEAHRLKN + L DLE +
Sbjct: 1064 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 1121
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERS-SELSAKVNQFILRRTN 408
+ + + E S E T +E L E +L A + +LRR
Sbjct: 1122 TGTPLQNTVEELFSLLHFLEPSRFPS-ETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK 1180
Query: 409 ALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI---LAYITALK 465
+ +L PK ++ +LT +Q + Y + KN +S+ Q+ + L + L+
Sbjct: 1181 EDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFT-FLSKGGGQANVPNLLNTMMELR 1238
Query: 466 KLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLA 525
K CNHP LI + F+D P+ F + A ++ +GK+ ++
Sbjct: 1239 KCCNHPYLINGAEEKI---LEEFKDAHNADSPD-FQLQ---------AMIQAAGKLVLID 1285
Query: 526 RLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDP 585
+LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++ F+ P
Sbjct: 1286 KLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKP 1344
Query: 586 SKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFL 645
+ FVFLL ++AGG G+NL + ++FD DWNP ND QA AR R GQ K V IYR +
Sbjct: 1345 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLI 1404
Query: 646 STGTIEEKVYQRQMSKEGLQKVIQQEQTD-SSATQG-NFLSTEDLRDL 691
+ + E +++ + K GL K + Q + +AT G LS +++ DL
Sbjct: 1405 TRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1452
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 501 (181.4 bits), Expect = 4.9e-44, P = 4.9e-44
Identities = 162/531 (30%), Positives = 255/531 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N CILAD+MGLGKT+QSI LY + +G G P
Sbjct: 206 LREYQLEGVNWL------LFNWYNTRNCILADEMGLGKTIQSITFLYEIYLKGIHG-PF- 257
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + F DP +V+ S
Sbjct: 258 ---LVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG--RVIKGS 312
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKND--QTLTNRN--DLEEFFAM 349
Y+ TF M + C E ++ ++ DEAHRLKN + L DLE +
Sbjct: 313 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 370
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE----LSAKVNQFILR 405
+ + + E GR P+ T ++ G ++ E L A + +LR
Sbjct: 371 TGTPLQNTVEELFSLLHFLEP----GRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLR 426
Query: 406 RTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI---LAYIT 462
R + +L PK ++ +LT +Q + Y + KN +S+ Q+ + L +
Sbjct: 427 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFA-FLSKGGGQANVPNLLNTMM 484
Query: 463 ALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMH 522
L+K CNHP LI G E+ I E + S + A ++ +GK+
Sbjct: 485 ELRKCCNHPYLI-----------NGAEEKILEEFKETHNADSPDFQLQ--AMIQAAGKLV 531
Query: 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHF 582
++ +LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++ F
Sbjct: 532 LIDKLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 590
Query: 583 NDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642
+ P + FVFLL ++AGG G+NL + ++FD DWNP ND QA AR R GQ K V IY
Sbjct: 591 SRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIY 650
Query: 643 RFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTD-SSATQG-NFLSTEDLRDL 691
R ++ + E +++ + K GL K + Q + +AT G LS +++ DL
Sbjct: 651 RLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 701
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 309 (113.8 bits), Expect = 5.7e-44, Sum P(2) = 5.7e-44
Identities = 68/179 (37%), Positives = 105/179 (58%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V + K+ VL +LL L++ R+++ S ++ LD+
Sbjct: 479 PYLFDGAEPGPPYTTDEHLVYNAAKLQVLDKLLKKLKEE-GSRVLIFSQMSRLLDILEDY 537
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y R+DG+T+ R + ++ +N P +FVFLL+++AGG G+NL + +VL+D
Sbjct: 538 CYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYD 597
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQEQT 673
DWNP D QA R R GQKK+V ++R ++ ++EEK+ +R K L Q VIQQ +T
Sbjct: 598 SDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRT 656
Score = 246 (91.7 bits), Expect = 5.7e-44, Sum P(2) = 5.7e-44
Identities = 97/326 (29%), Positives = 158/326 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LRP+Q +GV ++ VS L+ I G ILAD+MGLGKTLQ+I+ L Y + G P
Sbjct: 196 LRPYQIQGVNWL---VS--LHKNKIAG-ILADEMGLGKTLQTISFLGYLRYIEKIPG-PF 248
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
+++ P S ++NW EI +W V L + +++ I C V+I
Sbjct: 249 ----LVIAPKSTLNNWLREINRWTPD-VNAFIL-QGDKEERAELIQKKLLGCD-FDVVIA 301
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL--------TNRN-----------DL 343
SYE S + + +I DEAHR+KN++++ T+RN +L
Sbjct: 302 SYEIIIREKSPLK-KINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNL 360
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
E +A++NF P I DA F ++ + +TEE++ ++ +L + F+
Sbjct: 361 HELWALLNFLLPDIFSDAQDFDDWFSSE--------STEEDQDKIVK---QLHTVLQPFL 409
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSK--ILAY 460
LRR + + L PK + ++ +Q + Y + K++ S +K+SK +L
Sbjct: 410 LRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKKILE-KDLDAVNGSNGSKESKTRLLNI 468
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTT 486
+ L+K CNHP L +D + G P TT
Sbjct: 469 MMQLRKCCNHPYL-FDGAEPGPPYTT 493
Score = 39 (18.8 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 432 SELYNHFIHSKNVK 445
S L+ HFI SK K
Sbjct: 116 SGLFKHFIESKAAK 129
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 501 (181.4 bits), Expect = 7.3e-44, P = 7.3e-44
Identities = 162/531 (30%), Positives = 255/531 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N CILAD+MGLGKT+QSI LY + +G G P
Sbjct: 969 LREYQLEGVNWL------LFNWYNTRNCILADEMGLGKTIQSITFLYEIYLKGIHG-PF- 1020
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + F DP +V+ S
Sbjct: 1021 ---LVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG--RVIKGS 1075
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKND--QTLTNRN--DLEEFFAM 349
Y+ TF M + C E ++ ++ DEAHRLKN + L DLE +
Sbjct: 1076 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 1133
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE----LSAKVNQFILR 405
+ + + E GR P+ T ++ G ++ E L A + +LR
Sbjct: 1134 TGTPLQNTVEELFSLLHFLEP----GRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLR 1189
Query: 406 RTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI---LAYIT 462
R + +L PK ++ +LT +Q + Y + KN +S+ Q+ + L +
Sbjct: 1190 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFA-FLSKGGGQANVPNLLNTMM 1247
Query: 463 ALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMH 522
L+K CNHP LI G E+ I E + S + A ++ +GK+
Sbjct: 1248 ELRKCCNHPYLI-----------NGAEEKILEEFKETHNADSPDFQLQ--AMIQAAGKLV 1294
Query: 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHF 582
++ +LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++ F
Sbjct: 1295 LIDKLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 1353
Query: 583 NDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642
+ P + FVFLL ++AGG G+NL + ++FD DWNP ND QA AR R GQ K V IY
Sbjct: 1354 SRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIY 1413
Query: 643 RFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTD-SSATQG-NFLSTEDLRDL 691
R ++ + E +++ + K GL K + Q + +AT G LS +++ DL
Sbjct: 1414 RLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1464
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 498 (180.4 bits), Expect = 7.4e-44, P = 7.4e-44
Identities = 159/531 (29%), Positives = 257/531 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L P+Q EG+ ++ C S +A ILAD+MGLGKT+QS+ LYTL+ +G P
Sbjct: 616 LHPYQLEGINWLRHCWSNGTDA------ILADEMGLGKTVQSLTFLYTLMKEGHTKGPF- 668
Query: 244 KKAIIVTPTSLVSNWEAEIKKW---------VGGRVQLIALCE---STRDDVVSGIDSFT 291
+I P S + NWE E + W VG R + + E S D V G +
Sbjct: 669 ---LIAAPLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVS 725
Query: 292 D--PCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFF 347
+L+ VL+ SYE M + S + L++ DEAHRLKN+Q+ +N L E+
Sbjct: 726 KIKTLENLKFHVLLTSYECINMDKAILSSIDWAALVV-DEAHRLKNNQSTFFKN-LREYN 783
Query: 348 AMVNFTNPGI-----LGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE-LSAKVNQ 401
G L + + + E + T E ++ E E L +
Sbjct: 784 IQYRVLLTGTPLQNNLEELFHLLNFLAPDRFNQLE-SFTAEFSEISKEDQIEKLHNLLGP 842
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRA-ISEETKQSKILAY 460
+LRR A + +P K +V +L+ +Q + Y + + ++N + Q ++
Sbjct: 843 HMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNIL-TRNFDALNVKNGGTQMSLINI 901
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
I LKK CNHP L +K+ C+ P++ ++G + G A ++ +GK
Sbjct: 902 IMELKKCCNHPYLF---MKA----------CLE--APKL---KNGMYEGS--ALIKNAGK 941
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L ++L L+ R+++ S T LD+ C Y Y R+DG+ + +RQ ++
Sbjct: 942 FVLLQKMLRKLKDG-GHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAID 1000
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
+N P +FVFLLS++AGG G+NL + ++++D DWNP ND QA +R R GQK +V
Sbjct: 1001 RYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVM 1060
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDL 691
IYRF++ G++EE++ K L ++ + A G +S +L D+
Sbjct: 1061 IYRFVTKGSVEERITSVAKKKMLLTHLVVR--AGLGAKDGKSMSKTELDDV 1109
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 498 (180.4 bits), Expect = 7.4e-44, P = 7.4e-44
Identities = 159/531 (29%), Positives = 257/531 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L P+Q EG+ ++ C S +A ILAD+MGLGKT+QS+ LYTL+ +G P
Sbjct: 616 LHPYQLEGINWLRHCWSNGTDA------ILADEMGLGKTVQSLTFLYTLMKEGHTKGPF- 668
Query: 244 KKAIIVTPTSLVSNWEAEIKKW---------VGGRVQLIALCE---STRDDVVSGIDSFT 291
+I P S + NWE E + W VG R + + E S D V G +
Sbjct: 669 ---LIAAPLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVS 725
Query: 292 D--PCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFF 347
+L+ VL+ SYE M + S + L++ DEAHRLKN+Q+ +N L E+
Sbjct: 726 KIKTLENLKFHVLLTSYECINMDKAILSSIDWAALVV-DEAHRLKNNQSTFFKN-LREYN 783
Query: 348 AMVNFTNPGI-----LGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE-LSAKVNQ 401
G L + + + E + T E ++ E E L +
Sbjct: 784 IQYRVLLTGTPLQNNLEELFHLLNFLAPDRFNQLE-SFTAEFSEISKEDQIEKLHNLLGP 842
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRA-ISEETKQSKILAY 460
+LRR A + +P K +V +L+ +Q + Y + + ++N + Q ++
Sbjct: 843 HMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNIL-TRNFDALNVKNGGTQMSLINI 901
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
I LKK CNHP L +K+ C+ P++ ++G + G A ++ +GK
Sbjct: 902 IMELKKCCNHPYLF---MKA----------CLE--APKL---KNGMYEGS--ALIKNAGK 941
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L ++L L+ R+++ S T LD+ C Y Y R+DG+ + +RQ ++
Sbjct: 942 FVLLQKMLRKLKDG-GHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAID 1000
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
+N P +FVFLLS++AGG G+NL + ++++D DWNP ND QA +R R GQK +V
Sbjct: 1001 RYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVM 1060
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDL 691
IYRF++ G++EE++ K L ++ + A G +S +L D+
Sbjct: 1061 IYRFVTKGSVEERITSVAKKKMLLTHLVVR--AGLGAKDGKSMSKTELDDV 1109
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 329 (120.9 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 65/164 (39%), Positives = 103/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+
Sbjct: 776 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 834
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 835 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 894
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ G++EE + +R K L ++ Q + T
Sbjct: 895 QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT 938
Score = 228 (85.3 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 76/272 (27%), Positives = 131/272 (48%)
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
+ CILAD+MGLGKT+Q+I+ L L F + ++V P S +++W+ EI+ W
Sbjct: 496 NSCILADEMGLGKTIQTISFLNYL----FHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQ 551
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICD 326
++ L + T +++ + L+ +L+ +YE + F + + D
Sbjct: 552 MNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEIL-LKDKSFLGGLNWAFIGVD 610
Query: 327 EAHRLKNDQTLTNRNDLEEFFAMVNFTNPGI-LGDAAYFRRYYETSIICGREPTATEEEK 385
EAHRLKND +L + L + + + T P + + + E EEE
Sbjct: 611 EAHRLKNDDSLLYKT-LIDLVTIDSDTAPSCTIPQELWLLHFIMPEKFSSWEDF--EEEH 667
Query: 386 KLGIERS-SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV 444
G E + L ++ F+LRR + LP K+ +++ +++ LQ + Y +I ++N
Sbjct: 668 GKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK-WILTRNY 726
Query: 445 KRAISEETKQSK--ILAYITALKKLCNHPKLI 474
K A+S+ +K S L + LKK CNH LI
Sbjct: 727 K-ALSKGSKGSTSGFLNIMMELKKCCNHCYLI 757
Score = 41 (19.5 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 451 ETKQSKILAYITALKKLCNHPKLIYDT---IKSGNPGTTGFEDC 491
ET+++ + +KKL N+ K +T +K+ +P + +C
Sbjct: 330 ETEETLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYNC 373
Score = 39 (18.8 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 27/158 (17%), Positives = 53/158 (33%)
Query: 614 FDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQT 673
FD DW +D ++ G I + ++ +K+ K+ K +Q
Sbjct: 1242 FDIDWGKEDDSNLLVGIYEYGYGSWEMI-KMDPDLSLTQKILPDDPDKKPQAKQLQTRAD 1300
Query: 674 DSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKN 733
L+ ++ + L + R + + + E I + K+
Sbjct: 1301 YLIKLLNKDLARKEAQRLAGAGNSKRRKTRNKKNKMKASKIK---EEIKSDSSPQPSEKS 1357
Query: 734 DQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDL 771
D+ D E + + LHK +EK+ E D+
Sbjct: 1358 DEDDDEEDNKDEIVSVKH-LHKKIKTEKENEEKPEPDI 1394
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 490 (177.5 bits), Expect = 1.1e-43, P = 1.1e-43
Identities = 153/521 (29%), Positives = 253/521 (48%)
Query: 194 FMFECVSGLLNAAGIHGC--ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251
F E VS L + G G ILAD+MGLGKT+Q++ LY+L +G P +I P
Sbjct: 270 FQIEGVSWLRYSWG-QGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPF----LISVP 324
Query: 252 TSLVSNWEAEIKKW---------VGGRVQ--LIALCESTRDDVVSGIDSFTDPCSSLQVL 300
S ++NWE E++ W VGG+ +I E + ++V + V+
Sbjct: 325 LSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNVM 384
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEF---FAMVNFTNP-- 355
+ SYE + ++ C + L++ DEAHRL+++Q+ R L ++ + ++ P
Sbjct: 385 LTSYEFISVDAAFLGCIDWAALVV-DEAHRLRSNQSKFFRI-LSKYRIGYKLLLTGTPLQ 442
Query: 356 GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHL 415
L + + + + + E E+ L + +LRR A + +
Sbjct: 443 NNLEELFHLLNFLSSGKFNDLQTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKSM 502
Query: 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEET--KQSKILAYITALKKLCNHPKL 473
PPK +V +L+ +Q + Y H + +KN K A++++ + +L + L+K CNHP L
Sbjct: 503 PPKSEFIVRVELSSMQKKFYKHIL-TKNFK-ALNQKGGGRVCSLLNIMMDLRKCCNHPYL 560
Query: 474 IYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ 533
+ +G EM S + SGK+ +L+++L L+
Sbjct: 561 FPSAAEEATISPSGLY--------EMSS------------LTKASGKLDLLSKMLKQLKA 600
Query: 534 RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFL 593
+ R++L S T+ L++ Y Y R+DG+ RQK ++ FNDP FVFL
Sbjct: 601 -DNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFL 659
Query: 594 LSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEK 653
LS++AGG G+NL + +++FD DWNP ND QA +R R GQKK+V IYRF++ ++EE+
Sbjct: 660 LSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEER 719
Query: 654 VYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTF 694
+ Q K L ++ + T NF S ++L D+ F
Sbjct: 720 IMQVAKHKMMLTHLVVRPGMGGMTT--NF-SKDELEDILRF 757
Score = 322 (118.4 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 79/221 (35%), Positives = 121/221 (54%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK+ +L+++L L+ + R++L S T+ L++ Y Y R+DG+ RQK
Sbjct: 585 SGKLDLLSKMLKQLKA-DNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQK 643
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
++ FNDP FVFLLS++AGG G+NL + +++FD DWNP ND QA +R R GQKK
Sbjct: 644 AIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKK 703
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTF--H 695
+V IYRF++ ++EE++ Q K L ++ + T NF S ++L D+ F
Sbjct: 704 KVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTT--NF-SKDELEDILRFGTE 760
Query: 696 DDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQS 736
D + E +H YDD A + D TN + +S
Sbjct: 761 DLFKDGKSEAIH------YDDKAVA-DLLDRTNRGIEEKES 794
Score = 40 (19.1 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 316 CSESCDLLICD 326
CS+ DLL CD
Sbjct: 41 CSDGGDLLCCD 51
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 300 (110.7 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 64/191 (33%), Positives = 109/191 (57%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK+ L +LL + R ++ +L + + + LD+ Y ++RLDG+T + +RQK
Sbjct: 1767 SGKLCALEKLLSKCK-REGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQK 1825
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
+V FN+ K+ F+F+ S+++G G+NL N ++ +D DWNP+ DKQA R R GQ K
Sbjct: 1826 IVTKFNN-DKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTK 1884
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQKV-IQQEQTDSSATQGNFLSTEDL--RDLFTF 694
V ++RF+ T+EE ++++Q+ K L + I ++S T T+ +D FT
Sbjct: 1885 DVHVFRFVCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNTHSKITDTDPTHNKDWFTN 1944
Query: 695 HDDVRSEIHEN 705
D ++ E+ N
Sbjct: 1945 VDTIK-EVFIN 1954
Score = 258 (95.9 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 93/344 (27%), Positives = 159/344 (46%)
Query: 176 VDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQ 235
+ P++ LR +Q G+ ++ L I+G ILAD+MGLGKTLQ I+LL + L
Sbjct: 654 IPPIIKATLRDYQHAGLHWLL-----YLYKNNING-ILADEMGLGKTLQCISLL-SYLAY 706
Query: 236 GFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCS 295
F+ + +++ PTS++ NWE E+K++ ++++ + + + F
Sbjct: 707 YFN---IWGPHLVIVPTSILINWEIELKRFCPC-FKILSYYGNQNERYKKRVGWFNK--D 760
Query: 296 SLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------------LTN 339
S + I SY T F + +I DEAH +KN T +T
Sbjct: 761 SFHICISSYSTVVKDHLVFK-RKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITG 819
Query: 340 ---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELS 396
+N LEE +++++F P I F+ ++ + E + K+L I+R L
Sbjct: 820 TPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKEL-IDR---LH 875
Query: 397 AKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK 456
+ +ILRR + +P K ++ CKLT Q LY+ FI++KNV+ ++
Sbjct: 876 TVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTGNYIG- 934
Query: 457 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMF 500
++ + L+K+CNH L + P + IR+F P F
Sbjct: 935 LMNILIQLRKVCNHCDLFTNKYIQ-TPYY--YMLSIRYFVPRFF 975
Score = 59 (25.8 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 20/88 (22%), Positives = 38/88 (43%)
Query: 659 MSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTR---CQNYD 715
M + ++ +E +S N + L + ++D ++ IH+N C C +
Sbjct: 1121 MDHNNMNNLLSKEMVNSLRNDDNSNNNFYKYSLTSNNNDSQTSIHDNKQCDYNKLCADTF 1180
Query: 716 DGAESIGEGDETNSANK-NDQSDQEVTD 742
+ SIG +E S N N+Q++ D
Sbjct: 1181 NNINSIGN-EEKRSLNVLNEQNNNNSKD 1207
Score = 44 (20.5 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 21/98 (21%), Positives = 40/98 (40%)
Query: 652 EKVYQRQMSKE---GLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHC 708
EK + K+ L + ++ Q + S F + D +D + + ++EN+
Sbjct: 1985 EKTLEHVEDKDDIRALNETKKETQNEISQNMQEFTTRNDFQDSYNLTSYCFNFLNENLTD 2044
Query: 709 TRCQNYDD-----GAESIGEGDETNS----ANKNDQSD 737
+ Q D+ E + GDE S +NK+ S+
Sbjct: 2045 SLKQQIDEMRMKIEIEMMNTGDENMSLSDLSNKSHNSE 2082
Score = 37 (18.1 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 280 RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTN 339
++ + I SF+D L L +Y+ ++ ++ +S + + +++K + TLTN
Sbjct: 1380 KEYIPKNILSFSD--EFLTELNNNYDILSLYIDPYNRYKSYN----EYLYKMKEEGTLTN 1433
Query: 340 RNDL 343
+ L
Sbjct: 1434 QQSL 1437
Score = 37 (18.1 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 690 DLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSD 737
D F + + +E +++ QN ++ ++ D N+ + N+ D
Sbjct: 1178 DTFNNINSIGNEEKRSLNVLNEQNNNNSKDNNNNIDNNNNIDNNNNID 1225
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 300 (110.7 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 64/191 (33%), Positives = 109/191 (57%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK+ L +LL + R ++ +L + + + LD+ Y ++RLDG+T + +RQK
Sbjct: 1767 SGKLCALEKLLSKCK-REGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQK 1825
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
+V FN+ K+ F+F+ S+++G G+NL N ++ +D DWNP+ DKQA R R GQ K
Sbjct: 1826 IVTKFNN-DKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTK 1884
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQKV-IQQEQTDSSATQGNFLSTEDL--RDLFTF 694
V ++RF+ T+EE ++++Q+ K L + I ++S T T+ +D FT
Sbjct: 1885 DVHVFRFVCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNTHSKITDTDPTHNKDWFTN 1944
Query: 695 HDDVRSEIHEN 705
D ++ E+ N
Sbjct: 1945 VDTIK-EVFIN 1954
Score = 258 (95.9 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 93/344 (27%), Positives = 159/344 (46%)
Query: 176 VDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQ 235
+ P++ LR +Q G+ ++ L I+G ILAD+MGLGKTLQ I+LL + L
Sbjct: 654 IPPIIKATLRDYQHAGLHWLL-----YLYKNNING-ILADEMGLGKTLQCISLL-SYLAY 706
Query: 236 GFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCS 295
F+ + +++ PTS++ NWE E+K++ ++++ + + + F
Sbjct: 707 YFN---IWGPHLVIVPTSILINWEIELKRFCPC-FKILSYYGNQNERYKKRVGWFNK--D 760
Query: 296 SLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------------LTN 339
S + I SY T F + +I DEAH +KN T +T
Sbjct: 761 SFHICISSYSTVVKDHLVFK-RKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITG 819
Query: 340 ---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELS 396
+N LEE +++++F P I F+ ++ + E + K+L I+R L
Sbjct: 820 TPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKEL-IDR---LH 875
Query: 397 AKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK 456
+ +ILRR + +P K ++ CKLT Q LY+ FI++KNV+ ++
Sbjct: 876 TVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTGNYIG- 934
Query: 457 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMF 500
++ + L+K+CNH L + P + IR+F P F
Sbjct: 935 LMNILIQLRKVCNHCDLFTNKYIQ-TPYY--YMLSIRYFVPRFF 975
Score = 59 (25.8 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 20/88 (22%), Positives = 38/88 (43%)
Query: 659 MSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTR---CQNYD 715
M + ++ +E +S N + L + ++D ++ IH+N C C +
Sbjct: 1121 MDHNNMNNLLSKEMVNSLRNDDNSNNNFYKYSLTSNNNDSQTSIHDNKQCDYNKLCADTF 1180
Query: 716 DGAESIGEGDETNSANK-NDQSDQEVTD 742
+ SIG +E S N N+Q++ D
Sbjct: 1181 NNINSIGN-EEKRSLNVLNEQNNNNSKD 1207
Score = 44 (20.5 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 21/98 (21%), Positives = 40/98 (40%)
Query: 652 EKVYQRQMSKE---GLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHC 708
EK + K+ L + ++ Q + S F + D +D + + ++EN+
Sbjct: 1985 EKTLEHVEDKDDIRALNETKKETQNEISQNMQEFTTRNDFQDSYNLTSYCFNFLNENLTD 2044
Query: 709 TRCQNYDD-----GAESIGEGDETNS----ANKNDQSD 737
+ Q D+ E + GDE S +NK+ S+
Sbjct: 2045 SLKQQIDEMRMKIEIEMMNTGDENMSLSDLSNKSHNSE 2082
Score = 37 (18.1 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 280 RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTN 339
++ + I SF+D L L +Y+ ++ ++ +S + + +++K + TLTN
Sbjct: 1380 KEYIPKNILSFSD--EFLTELNNNYDILSLYIDPYNRYKSYN----EYLYKMKEEGTLTN 1433
Query: 340 RNDL 343
+ L
Sbjct: 1434 QQSL 1437
Score = 37 (18.1 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 690 DLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSD 737
D F + + +E +++ QN ++ ++ D N+ + N+ D
Sbjct: 1178 DTFNNINSIGNEEKRSLNVLNEQNNNNSKDNNNNIDNNNNIDNNNNID 1225
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 329 (120.9 bits), Expect = 1.8e-43, Sum P(2) = 1.8e-43
Identities = 65/164 (39%), Positives = 103/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+
Sbjct: 776 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 834
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 835 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 894
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ G++EE + +R K L ++ Q + T
Sbjct: 895 QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT 938
Score = 226 (84.6 bits), Expect = 1.8e-43, Sum P(2) = 1.8e-43
Identities = 76/272 (27%), Positives = 131/272 (48%)
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
+ CILAD+MGLGKT+Q+I+ L L F + ++V P S +++W+ EI+ W
Sbjct: 496 NSCILADEMGLGKTIQTISFLNYL----FHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQ 551
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICD 326
++ L + T +++ + L+ +L+ +YE + F + + D
Sbjct: 552 MNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEIL-LKDKSFLGGLNWAFIGVD 610
Query: 327 EAHRLKNDQTLTNRNDLEEFFAMVNFTNPGI-LGDAAYFRRYYETSIICGREPTATEEEK 385
EAHRLKND +L + L + + + T P + + + E EEE
Sbjct: 611 EAHRLKNDDSLLYKT-LIDLVTIDSDTAPSCTIPQELWSLHFIMPEKFSSWEDF--EEEH 667
Query: 386 KLGIERS-SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV 444
G E + L ++ F+LRR + LP K+ +++ +++ LQ + Y +I ++N
Sbjct: 668 GKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK-WILTRNY 726
Query: 445 KRAISEETKQSK--ILAYITALKKLCNHPKLI 474
K A+S+ +K S L + LKK CNH LI
Sbjct: 727 K-ALSKGSKGSTSGFLNIMMELKKCCNHCYLI 757
Score = 41 (19.5 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 451 ETKQSKILAYITALKKLCNHPKLIYDT---IKSGNPGTTGFEDC 491
ET+++ + +KKL N+ K +T +K+ +P + +C
Sbjct: 330 ETEETLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYNC 373
Score = 39 (18.8 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 27/158 (17%), Positives = 53/158 (33%)
Query: 614 FDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQT 673
FD DW +D ++ G I + ++ +K+ K+ K +Q
Sbjct: 1241 FDIDWGKEDDSNLLVGIYEYGYGSWEMI-KMDPDLSLTQKILPDDPDKKPQAKQLQTRAD 1299
Query: 674 DSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKN 733
L+ ++ + L + R + + + E I + K+
Sbjct: 1300 YLIKLLNKDLARKEAQRLAGAGNSKRRKTRNKKNKMKASKIK---EEIKSDSSPQPSEKS 1356
Query: 734 DQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDL 771
D+ D E + + LHK +EK+ E D+
Sbjct: 1357 DEDDDEEDNKDEIVSVKH-LHKKIKTEKENEEKPEPDI 1393
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 510 (184.6 bits), Expect = 3.5e-43, Sum P(2) = 3.5e-43
Identities = 163/528 (30%), Positives = 254/528 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N + CILAD+MGLGKT+QSI LY + +G G P
Sbjct: 967 LREYQLEGVNWL------LFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHG-PF- 1018
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + S F DP +V+ S
Sbjct: 1019 ---LVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQSYEMYFKDPQG--RVIKGS 1073
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKND--QTLTNRN--DLEEFFAM 349
Y+ TF M + C E ++ ++ DEAHRLKN + L DLE +
Sbjct: 1074 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 1131
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERS-SELSAKVNQFILRRTN 408
+ + + E S E T +E L E +L A + +LRR
Sbjct: 1132 TGTPLQNTVEELFSLLHFLEPSRFPS-ETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK 1190
Query: 409 ALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI---LAYITALK 465
+ +L PK ++ +LT +Q + Y + KN +S+ Q+ + L + L+
Sbjct: 1191 EDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFT-FLSKGGGQANVPNLLNTMMELR 1248
Query: 466 KLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLA 525
K CNHP LI G E+ I E + S + A ++ +GK+ ++
Sbjct: 1249 KCCNHPYLI-----------NGAEEKILEEFKETHNADSPDFQLQ--AMIQAAGKLVLID 1295
Query: 526 RLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDP 585
+LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++ F+ P
Sbjct: 1296 KLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKP 1354
Query: 586 SKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFL 645
+ FVFLL ++AGG G+NL + ++FD DWNP ND QA AR R GQ K V IYR +
Sbjct: 1355 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLI 1414
Query: 646 STGTIEEKVYQRQMSKEGLQKVIQQEQTD-SSATQG-NFLSTEDLRDL 691
+ + E +++ + K GL K + Q + +AT G LS +++ DL
Sbjct: 1415 TRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1462
Score = 39 (18.8 bits), Expect = 3.5e-43, Sum P(2) = 3.5e-43
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 707 HCTRCQNYDDGAESIGEGDETNSANKNDQSDQE 739
+ T D + +G+E + N+ + D E
Sbjct: 2823 NATTASGQGDPDDGTSKGEEKGNENEEENKDSE 2855
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 298 (110.0 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 77/231 (33%), Positives = 122/231 (52%)
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK+ L +LL L+ R ++ + T+ LD+ Q + YLRLDGTT + +RQ L
Sbjct: 1373 GKLQRLDKLLRDLKAG-GHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQIL 1431
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
+ FN+ ++ F+LSS++GG G+NL G + ++ +D DWNPA DKQ R R GQ +
Sbjct: 1432 TDRFNNDNRI-LAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRD 1490
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDV 698
V IYRF+S TIE + ++ K L V+ QE ++ ++ + D+RD+ + +
Sbjct: 1491 VHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGEFTT----DYFTKLDVRDMIGNDEAL 1546
Query: 699 RSEIHENMHCT---RCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGF 746
+ E M R N E + ++ ++A KN Q + E D G F
Sbjct: 1547 KDEASAAMDRVLENRVTNTSRVFEQAEDKEDIDAA-KNAQKELEHADDGDF 1596
Score = 172 (65.6 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 65/177 (36%), Positives = 90/177 (50%)
Query: 160 QPEEPQNDGGNLVPITVDPLLVR-FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMG 218
QP E G PI P L+R LR +Q G+ ++ +GL + I+G ILAD+MG
Sbjct: 804 QPSESPGPGLK-TPI---PHLLRGTLREYQHFGLDWL----AGLYSNH-ING-ILADEMG 853
Query: 219 LGKTLQSIALLYTLLCQ-GFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALC 276
LGKT+Q+IALL L + G G +V V PTS++ NWE E KKW G ++
Sbjct: 854 LGKTIQTIALLAHLAVEHGVWGPHLV-----VVPTSVILNWEMEFKKWCPGFKIMTYYGN 908
Query: 277 ESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
+ R G + D +S VLI SY+ + + S +I DEAH +KN
Sbjct: 909 QEERRQKRRG---WMDD-NSWNVLITSYQLV-LQDQQVLKRRSWHYMILDEAHNIKN 960
Score = 133 (51.9 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 46/150 (30%), Positives = 75/150 (50%)
Query: 340 RNDLEEFFAMVNFTNP------GILGDA------AYFRRYYETSIICGREPTATEEEKKL 387
+N+L E ++++ F P GI G A +FRR E + GRE T +E K++
Sbjct: 986 QNNLTELWSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRE-TMDDEAKQV 1044
Query: 388 GIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRA 447
++L + +ILRR A + +P K VV C+L+ Q LY+ F+ K
Sbjct: 1045 ----VTKLHTVLRPYILRRLKADVEKQMPGKYEHVVYCRLSKRQRYLYDGFMSRAQTKET 1100
Query: 448 ISEETKQSKILAYITALKKLCNHPKLIYDT 477
++ S I+ + L+K+CNHP L ++T
Sbjct: 1101 LASGNYLS-IINCLMQLRKVCNHPDL-FET 1128
Score = 37 (18.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 375 GREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLP 416
G +TE E++ G +R ++ + L+ N +N P
Sbjct: 487 GESNMSTETEEEDGDDRDDDVGLTAEELRLKYANLPDTNPHP 528
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 304 (112.1 bits), Expect = 4.3e-43, Sum P(2) = 4.3e-43
Identities = 60/161 (37%), Positives = 97/161 (60%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK+ +L +LL L+ + R+++ S LD+ + + RR+P RLDG+ R++
Sbjct: 710 SGKLILLDKLLCRLKDK-GHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQ 768
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
++H+N P +F FLLS++AGG G+NL + +++FD DWNP ND QA +R R GQ K
Sbjct: 769 ALDHYNAPGSTDFAFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTK 828
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
V IYR ++ G++EE++ +R K L ++ Q + T
Sbjct: 829 TVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRMDTTGKT 869
Score = 246 (91.7 bits), Expect = 4.3e-43, Sum P(2) = 4.3e-43
Identities = 89/308 (28%), Positives = 144/308 (46%)
Query: 184 LRPHQREGVQFM-FECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPM 242
LR +Q EG+ +M + G N++ ILAD+MGLGKT+QSI+LL +L + +D +
Sbjct: 405 LRDYQLEGLNWMVYAWCKG--NSS-----ILADEMGLGKTIQSISLLASLFHR-YD---L 453
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQV--L 300
++V P S ++ W+ E +W ++ + + D++ + F +++ +
Sbjct: 454 AGPYLVVVPLSTMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGGTKKMKINAI 513
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLE-EFFAMVNFTNPGILG 359
+ +YE + F S L+ DEAHRLKND++L ++ + F + T +
Sbjct: 514 LTTYEIL-LKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQN 572
Query: 360 DA----AYFRRYYETSIICGRE-PTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNH 414
A C E TA E GI S L K+ F+LRR +
Sbjct: 573 SLKELWALLHFIMPEKFDCWEEFETAHNESNHKGI---SALHKKLEPFLLRRVKKDVEKS 629
Query: 415 LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQS--KILAYITALKKLCNHPK 472
LPPK +++ +T Q + Y +I +KN R +S+ K S + + LKK CNH
Sbjct: 630 LPPKTEQILRVDMTAHQKQFYK-WILTKNY-RELSKGVKGSINGFVNLVMELKKCCNHAS 687
Query: 473 LI--YDTI 478
L YD I
Sbjct: 688 LTRQYDHI 695
Score = 45 (20.9 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 614 FDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQ 669
+D DW+ +D VW+ G I + G + +K++ + +K+ K +Q
Sbjct: 1152 WDVDWSRPDDSALLLGVWKYGYGSWEAIKMDPTLG-LADKIFIKDKTKKPQGKNLQ 1206
Score = 39 (18.8 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 332 KNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYE 369
KN L R E+F +M +F G++ + R Y+
Sbjct: 374 KNSNVLRKRPKFEKFESMPDFLKTD--GESTHKLRDYQ 409
>UNIPROTKB|E1C963 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:AADN02056475
EMBL:AADN02056476 EMBL:AADN02056477 IPI:IPI00581654
Ensembl:ENSGALT00000005129 OMA:THMRKNI Uniprot:E1C963
Length = 1148
Score = 313 (115.2 bits), Expect = 4.5e-43, Sum P(4) = 4.5e-43
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+TS S+R++L+N FNDPS + ++FLLS++AG G+NLIG NR+V+FD
Sbjct: 789 RNISYYRLDGSTSASERERLINQFNDPSNASVWLFLLSTRAGCLGVNLIGANRVVVFDAS 848
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
WNP +D QA RV+R GQKK IYR +S T+E+K+Y RQ+SK+G+
Sbjct: 849 WNPCHDAQAVCRVYRYGQKKPCHIYRLVSDYTLEKKIYDRQISKQGM 895
Score = 133 (51.9 bits), Expect = 4.5e-43, Sum P(4) = 4.5e-43
Identities = 36/104 (34%), Positives = 56/104 (53%)
Query: 166 NDGGNLVPITVDPLLVRFLRPHQREGVQFMFE-CVSGL--LNAAGIHGCILADDMGLGKT 222
N N I + P L ++PHQ G++F+++ V L + GCILA MGLGKT
Sbjct: 262 NHPPNEEDIFLAPQLAHAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKT 321
Query: 223 LQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
+Q I+ L +L + + K ++ AI+ P + + NW AE W+
Sbjct: 322 IQVISFL-DVLFRHTEAKTVL--AIV--PVNTLQNWLAEFNMWL 360
Score = 133 (51.9 bits), Expect = 4.5e-43, Sum P(4) = 4.5e-43
Identities = 39/146 (26%), Positives = 71/146 (48%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L + +
Sbjct: 505 QNNLIEYWCMVDFVRPDFLGSRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLL 564
Query: 400 NQFILR---RTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK 456
F+ R R + +L LP K V+ +L+ +Q LY F++ S +
Sbjct: 565 EGFVQRLPRRGHNVLKVQLPSKEEHVILVRLSKIQRALYTEFMNRFR-DAGNSGWLGLNP 623
Query: 457 ILAYITALKKLCNHPKLIYDTIKSGN 482
+ A+ K + NHP ++Y+ ++ N
Sbjct: 624 LKAFCVCCK-IWNHPDVLYEALQKEN 648
Score = 60 (26.2 bits), Expect = 4.5e-43, Sum P(4) = 4.5e-43
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 321 DLLICDEAHRLKNDQTLTNR 340
D++ICDE HR+KN T++
Sbjct: 467 DVVICDEGHRIKNCHASTSQ 486
>UNIPROTKB|K7GSF7 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 EMBL:CU928419 EMBL:CU693469 EMBL:CU928840
EMBL:FP102832 Ensembl:ENSSSCT00000036604 Uniprot:K7GSF7
Length = 2372
Score = 299 (110.3 bits), Expect = 4.6e-43, Sum P(4) = 4.6e-43
Identities = 58/142 (40%), Positives = 91/142 (64%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T+ R+K FND + +F++S+KAG G+NL+ NR+++FD
Sbjct: 2035 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDAS 2094
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSS 676
WNP+ D Q+ RV+R GQ K V++YRFL+ GT+E+K+Y RQ++K+ L +V+ Q+Q +
Sbjct: 2095 WNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERH 2154
Query: 677 ATQGNFLSTEDLRDLFTFHDDV 698
T +L +L+TF D+
Sbjct: 2155 FTMN------ELTELYTFEPDL 2170
Score = 179 (68.1 bits), Expect = 4.6e-43, Sum P(4) = 4.6e-43
Identities = 66/214 (30%), Positives = 101/214 (47%)
Query: 151 PGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFEC----VSGLLNAA 206
P LVL + EE + LV + + ++++ L+PHQ +GVQFM++C V +
Sbjct: 1487 PITTKLVLDEDEETKEP---LVQVHRN-MVIK-LKPHQVDGVQFMWDCCCESVKKTKKSP 1541
Query: 207 GIHGCILADDMGLGKTLQSIALLYT-LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265
G GCILA MGLGKTLQ ++ L+T LLC D A++V P + NW E +KW
Sbjct: 1542 G-SGCILAHCMGLGKTLQVVSFLHTVLLCDKLD----FSTALVVCPLNTALNWMNEFEKW 1596
Query: 266 VGG-----RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFR-------MHSSK 313
G ++++ L R S + V+I+ YE +R + S K
Sbjct: 1597 QEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGG--VMIIGYEMYRNLAQGRNVKSRK 1654
Query: 314 FS-------CSESCDLLICDEAHRLKNDQTLTNR 340
D ++CDE H LKN+ + ++
Sbjct: 1655 LKEIFNKALVDPGPDFVVCDEGHILKNEASAVSK 1688
Score = 125 (49.1 bits), Expect = 4.6e-43, Sum P(4) = 4.6e-43
Identities = 40/150 (26%), Positives = 71/150 (47%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E+ MVNF +LG FR + I G+ +T + ++ +R+ L +
Sbjct: 1707 QNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEML 1766
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI-HSKNVKRAISEETKQ---S 455
+ R+ L+ LPPK V+ ++TP+Q +LY +++ H V + SE + +
Sbjct: 1767 AGCVQRKDYTALTKFLPPKHEYVLAVRMTPIQCKLYQYYLDHLTGVGNS-SEGGRGKAGA 1825
Query: 456 KILAYITALKKLCNHPKLIY-DTIKSGNPG 484
K+ L ++ HP + D I N G
Sbjct: 1826 KLFQDFQMLSRIWTHPWCLQLDYISKENKG 1855
Score = 53 (23.7 bits), Expect = 4.6e-43, Sum P(4) = 4.6e-43
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 508 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL---FAQLC-RER 559
T D +E SGKM +L +L + + D++++ S +LDL F +L RE+
Sbjct: 1963 TDADAEVLEHSGKMVLLFEIL-RMAEEIGDKVLVFSQSLISLDLIEDFLELASREK 2017
Score = 38 (18.4 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 316 CSESCDLLICDEAH 329
C+E +L+ CD H
Sbjct: 184 CAEGGNLICCDFCH 197
>UNIPROTKB|F1MQ85 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070087 "chromo shadow domain binding" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:DAAA02072507 EMBL:DAAA02072500 EMBL:DAAA02072501
EMBL:DAAA02072502 EMBL:DAAA02072503 EMBL:DAAA02072504
EMBL:DAAA02072505 EMBL:DAAA02072506 IPI:IPI01003328
Ensembl:ENSBTAT00000061308 ArrayExpress:F1MQ85 Uniprot:F1MQ85
Length = 2473
Score = 299 (110.3 bits), Expect = 5.6e-43, Sum P(4) = 5.6e-43
Identities = 58/142 (40%), Positives = 91/142 (64%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T+ R+K FND + +F++S+KAG G+NL+ NR+++FD
Sbjct: 2060 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDAS 2119
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSS 676
WNP+ D Q+ RV+R GQ K V++YRFL+ GT+E+K+Y RQ++K+ L +V+ Q+Q +
Sbjct: 2120 WNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERH 2179
Query: 677 ATQGNFLSTEDLRDLFTFHDDV 698
T +L +L+TF D+
Sbjct: 2180 FTMN------ELTELYTFEPDL 2195
Score = 179 (68.1 bits), Expect = 5.6e-43, Sum P(4) = 5.6e-43
Identities = 66/214 (30%), Positives = 101/214 (47%)
Query: 151 PGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFEC----VSGLLNAA 206
P LVL + EE + LV + + ++++ L+PHQ +GVQFM++C V +
Sbjct: 1512 PITTKLVLDEDEETKEP---LVQVHRN-MVIK-LKPHQVDGVQFMWDCCCESVKKTKKSP 1566
Query: 207 GIHGCILADDMGLGKTLQSIALLYT-LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265
G GCILA MGLGKTLQ ++ L+T LLC D A++V P + NW E +KW
Sbjct: 1567 G-SGCILAHCMGLGKTLQVVSFLHTVLLCDKLD----FSTALVVCPLNTALNWMNEFEKW 1621
Query: 266 VGG-----RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFR-------MHSSK 313
G ++++ L R S + V+I+ YE +R + S K
Sbjct: 1622 QEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGG--VMIIGYEMYRNLAQGRNVKSRK 1679
Query: 314 FS-------CSESCDLLICDEAHRLKNDQTLTNR 340
D ++CDE H LKN+ + ++
Sbjct: 1680 LKEIFNKALVDPGPDFVVCDEGHILKNEASAVSK 1713
Score = 125 (49.1 bits), Expect = 5.6e-43, Sum P(4) = 5.6e-43
Identities = 40/150 (26%), Positives = 71/150 (47%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E+ MVNF +LG FR + I G+ +T + ++ +R+ L +
Sbjct: 1732 QNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEML 1791
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI-HSKNVKRAISEETKQ---S 455
+ R+ L+ LPPK V+ ++TP+Q +LY +++ H V + SE + +
Sbjct: 1792 AGCVQRKDYTALTKFLPPKHEYVLAVRMTPIQCKLYQYYLDHLTGVGNS-SEGGRGKAGA 1850
Query: 456 KILAYITALKKLCNHPKLIY-DTIKSGNPG 484
K+ L ++ HP + D I N G
Sbjct: 1851 KLFQDFQMLSRIWTHPWCLQLDYISKENKG 1880
Score = 53 (23.7 bits), Expect = 5.6e-43, Sum P(4) = 5.6e-43
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 508 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL---FAQLC-RER 559
T D +E SGKM +L +L + + D++++ S +LDL F +L RE+
Sbjct: 1988 TDADAEVLEHSGKMVLLFEIL-RMAEEIGDKVLVFSQSLISLDLIEDFLELASREK 2042
Score = 42 (19.8 bits), Expect = 5.2e-20, Sum P(4) = 5.2e-20
Identities = 24/118 (20%), Positives = 48/118 (40%)
Query: 365 RRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTN-ALLSNHLPPKIIEVV 423
RR ET+ R + ++EE ++ +LS + + R ++ + + N P K+ +
Sbjct: 657 RRQTETN----RTTSNSDEENNETVKEQQKLSVPMRKKDKRNSSDSAIDNPKPNKLPK-- 710
Query: 424 CCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSG 481
QSE+ +H S + + + S + + N+ K Y I+ G
Sbjct: 711 -----SKQSEIVDHISDSDEMLTILKDMPSMSHSSSDTDINEPHTNNKKTFYSEIQRG 763
Score = 38 (18.4 bits), Expect = 1.8e-28, Sum P(4) = 1.8e-28
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 316 CSESCDLLICDEAH 329
C+E +L+ CD H
Sbjct: 217 CAEGGNLICCDFCH 230
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 301 (111.0 bits), Expect = 5.8e-43, Sum P(2) = 5.8e-43
Identities = 74/217 (34%), Positives = 120/217 (55%)
Query: 509 GGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDG 568
G ++GK +L R+L + + R+++ TQ +D+ R + Y+RLDG
Sbjct: 781 GNSDLLFRVAGKFELLDRVLPKFKA-SGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDG 839
Query: 569 TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA 628
+T +R +++N FN P + F FLLS++AGG GLNL + +++FD DWNP D QA
Sbjct: 840 STKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQD 899
Query: 629 RVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSSAT---QGNFL- 683
R R GQK V I R ++T ++EE + +R M K + KVIQ + D+ +T Q FL
Sbjct: 900 RAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFLR 959
Query: 684 ---STEDLRDLFTFHDDVRSEIHEN-MHCTRCQNYDD 716
+E RD DD ++E+ ++ ++ T ++ D+
Sbjct: 960 RLIESETNRD-----DDDKAELDDDELNDTLARSADE 991
Score = 247 (92.0 bits), Expect = 5.8e-43, Sum P(2) = 5.8e-43
Identities = 92/332 (27%), Positives = 152/332 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q G+++M + LN ILAD+MGLGKT+QSI+L+ T L ++ K +
Sbjct: 470 LKEYQLRGLEWMVSLYNNHLNG------ILADEMGLGKTIQSISLI-TYL---YEVKKDI 519
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGI--DSFTDPCSSLQVL 300
+++ P S ++NW E +KW +I + R + I +F ++ + +
Sbjct: 520 GPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRVGNFDVLLTTYEYI 579
Query: 301 IVSYETFRMHS---------SKFSCSESCDLLICDEAHRLKNDQTLTN---RNDLEEFFA 348
I H + ++S +R +N LT +N+L E +A
Sbjct: 580 IKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWA 639
Query: 349 MVNFTNPGILGDAAYFRRYYETSII-CGREPTA--TEEEKKLGIERSSELSAKVNQFILR 405
++NF P I A F ++ T G + TEEE L I R L + F+LR
Sbjct: 640 LLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRR---LHKVLRPFLLR 696
Query: 406 RTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI-HSKNVKRAISEETKQSKILAY---I 461
R + LP K+ +V+ CKL+ LQ +LY + H+ A +E + I I
Sbjct: 697 RLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEGATKGGIKGLNNKI 756
Query: 462 TALKKLCNHPKLIYDTIKSG-NPGTTGFEDCI 492
L+K+CNHP ++D ++ NP + G D +
Sbjct: 757 MQLRKICNHP-FVFDEVEGVVNP-SRGNSDLL 786
Score = 43 (20.2 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 482 NPGTTGFEDCIRFFPPEMFSGR 503
N GT +DC+ F + S R
Sbjct: 212 NLGTYSLDDCLEFITKDDLSSR 233
Score = 43 (20.2 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 52/263 (19%), Positives = 88/263 (33%)
Query: 650 IEEKVYQRQMSKEGLQKVIQQEQT--DSSATQGNFL-STED----LRDLFTFHDDVRSEI 702
IEE ++++ S E L ++ Q+++ D T+ FL + ED L D + R
Sbjct: 1036 IEEH-FKKEDS-EPLGRIRQKKRVYYDDGLTEEQFLEAVEDDNMSLEDAIKKRREARERR 1093
Query: 703 HENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQ 762
+ T+ +N + E+ E ET+ N + + K +SS K+
Sbjct: 1094 RLRQNGTK-ENEIETLENTPEASETSLIENNSFTAAVDEETNADKETTASRSKRRSSRKK 1152
Query: 763 --LGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSPKMQ 820
+ ED N S A ++ + K P + V K+
Sbjct: 1153 RTISIVTAEDKENTQEESTSQENGGAKVEEEVKSSSVEIINGSESKKKKP-KLTVKIKLN 1211
Query: 821 ATEGNKNPNNHITNPKPKLDQRXXXXXXXXXXXXDVPSLENSAKFSLSASSQPKSMRTSL 880
T +N + KP+ + S + + MR L
Sbjct: 1212 KTTVLENNDGKRAEEKPE-----SKSPAKKTAAKKTKTKSKSLGIFPTVEKLVEEMREQL 1266
Query: 881 KGAIK-PKLSFGNQLPLKRFSPD 902
P+ S +LP KR PD
Sbjct: 1267 DEVDSHPRTSIFEKLPSKRDYPD 1289
Score = 40 (19.1 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 26/118 (22%), Positives = 47/118 (39%)
Query: 624 KQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFL 683
K+ + + R QKKRV+ L+ E V MS E K ++E + + N
Sbjct: 1042 KEDSEPLGRIRQKKRVYYDDGLTEEQFLEAVEDDNMSLEDAIKK-RREARERRRLRQNGT 1100
Query: 684 STEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVT 741
++ L + + + EN T + + A+ + T S +K S ++ T
Sbjct: 1101 KENEIETLENTPEASETSLIENNSFTAAVDEETNADK----ETTASRSKRRSSRKKRT 1154
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 319 (117.4 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
Identities = 63/154 (40%), Positives = 102/154 (66%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK+ +L +LL LR+ T R+++ S + LD+ A+ R + + RLDG+T RQ+
Sbjct: 938 SGKLVILDKLLVRLRE-TKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQ 996
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
++HFN P+ ++F FLLS++AGG G+NL + +V+FD DWNP ND QA +R R GQ++
Sbjct: 997 AMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQE 1056
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
V IYRF+++ ++EE++ +R K L ++ Q+
Sbjct: 1057 VVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQK 1090
Score = 231 (86.4 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
Identities = 87/328 (26%), Positives = 151/328 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLL-CQGFDGKPM 242
LR +Q EG+ F+ V+ LN + ILAD+MGLGKT+QS+++L L Q G P
Sbjct: 625 LRDYQLEGLNFL---VNSWLNDTNV---ILADEMGLGKTVQSVSMLGFLQNTQQIPG-PF 677
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTD-----PCSSL 297
++V P S ++NW E +KW+ G ++ + +V + + + P
Sbjct: 678 ----LVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVCQQYEFYNEKKVGRPIK-F 732
Query: 298 QVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------------LTN-- 339
L+ +YE + S + L++ DEAHRLKN + +T
Sbjct: 733 NALLTTYEVVLKDKAVLSKIKWIYLMV-DEAHRLKNSEAQLYTALLEFSTKNKLLITGTP 791
Query: 340 -RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAK 398
+N +EE +A+++F +PG + F Y+ ++ E +L + L +
Sbjct: 792 LQNSVEELWALLHFLDPGKFKNKDEFVENYKN--------LSSFNESEL-----ANLHLE 838
Query: 399 VNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK--NVKRAISEETKQSK 456
+ ILRR + LPPKI ++ +++PLQ + Y + ++ + + Q
Sbjct: 839 LRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGV--RGNQVS 896
Query: 457 ILAYITALKKLCNHPKLIYDTIKSGNPG 484
+L + LKK CNHP ++++ G G
Sbjct: 897 LLNIVVELKKCCNHP-FLFESADHGYGG 923
Score = 58 (25.5 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 565 RLDGTTSISKRQKLVNHFNDP-SKNEFVFLL--SSKAGGCGLNLIGGNRLVL 613
R+ G +SKR ++ +NDP S+ + L S+ + GCG N I RL+L
Sbjct: 1350 RVQGLQLLSKR---ISRYNDPISQFRVLSYLKPSNWSKGCGWNQIDDARLLL 1398
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 275 (101.9 bits), Expect = 7.1e-43, Sum P(2) = 7.1e-43
Identities = 93/305 (30%), Positives = 149/305 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ +C G +GCIL D+MGLGKT Q+IALL L+ + D P
Sbjct: 40 LRSYQLEGVNWLVQCFHGQ------NGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPF- 92
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+I+ P S++SNW+ E++++ G + + + D + S VL+ +
Sbjct: 93 ---LILCPLSVLSNWKEEMERFAPG-LSCVTYTGDKEERARRQQDLRQE--SGFHVLLTT 146
Query: 304 YETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEF---FAMVNFTNP--GIL 358
YE + + F S S +L DEAHRLKN +L +R L EF F ++ P L
Sbjct: 147 YEIC-LKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRT-LSEFSVVFRLLLTGTPIQNSL 204
Query: 359 GDAAYFRRYYETSIICGREPTATEEEKKLGIER----SSELSAKVNQFILRRTNALLSNH 414
+ E + C RE + IE+ +SEL + F+LRR A ++
Sbjct: 205 QELYSLLSVVEPDLFC-REQVEDFVQCYQDIEKESKSASELHRLLRPFLLRRVKAQVATE 263
Query: 415 LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLI 474
LP K V+ ++ LQ + Y + K++ +E K+ K+ +T L+K +HP L
Sbjct: 264 LPKKTEVVIYHGMSALQKKYYKAIL-MKDLDAFENETAKKVKLQNVLTQLRKCVDHPYL- 321
Query: 475 YDTIK 479
+D ++
Sbjct: 322 FDGVE 326
Score = 268 (99.4 bits), Expect = 7.1e-43, Sum P(2) = 7.1e-43
Identities = 61/154 (39%), Positives = 87/154 (56%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+E SGK+H+L RLL L R++L S T LD+ R Y Y R+DG+ +
Sbjct: 337 IEASGKLHLLDRLLAFLYSG-GHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEE 395
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R + +F + FVFLLS++AGG G+NL + ++ D D+NP ND QAAAR R G
Sbjct: 396 RHLAIKNFG--KQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIG 453
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
Q K V + R + T+EE VY++ SK L ++
Sbjct: 454 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMV 487
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 272 (100.8 bits), Expect = 7.3e-43, Sum P(2) = 7.3e-43
Identities = 63/155 (40%), Positives = 88/155 (56%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+E SGK+H+L RLL L R++L S T LD+ R Y Y R+DG+ +
Sbjct: 337 IEASGKLHLLDRLLAFLYSG-GHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEE 395
Query: 575 RQKLVNHF-NDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRD 633
R + +F N P FVFLLS++AGG G+NL + ++ D D+NP ND QAAAR R
Sbjct: 396 RHLAIKNFGNQPI---FVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRI 452
Query: 634 GQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
GQ K V + R + T+EE VY++ SK L ++
Sbjct: 453 GQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMV 487
Score = 271 (100.5 bits), Expect = 7.3e-43, Sum P(2) = 7.3e-43
Identities = 93/306 (30%), Positives = 150/306 (49%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ +C +GCIL D+MGLGKT Q+IALL L+ + D P
Sbjct: 40 LRSYQLEGVNWLVQCFHCQ------NGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPF- 92
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIV 302
+++ P S++SNW+ E++++ G ++ T D + + + S VL+
Sbjct: 93 ---LVLCPLSVLSNWKEEMERFAPG----LSCVTYTGDKEERARLQQDLRQESGFHVLLT 145
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAA 362
+YE + + F S S +L DEAHRLKN +L +R L EF A+ G +
Sbjct: 146 TYEIC-LKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRT-LSEFSAVFRLLLTGTPIQNS 203
Query: 363 YFRRY-----YETSIICGREPTATEEEKKLGIER----SSELSAKVNQFILRRTNALLSN 413
Y E + C RE ++ IE+ +SEL + F+LRR A ++
Sbjct: 204 LRELYSLLCVVEPDLFC-REQVEDFVQRYQDIEKESKSASELHRLLQPFLLRRVKAQVAT 262
Query: 414 HLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKL 473
LP K VV ++ LQ + Y + K++ +E K+ K+ +T L+K +HP L
Sbjct: 263 ELPKKTEVVVYHGMSALQKKYYKAIL-MKDLDAFENETAKKVKLQNILTQLRKCVDHPYL 321
Query: 474 IYDTIK 479
+D ++
Sbjct: 322 -FDGVE 326
>UNIPROTKB|E1C8H5 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0070087 "chromo shadow domain binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:AADN02013550 EMBL:AADN02013551 IPI:IPI00573178
Ensembl:ENSGALT00000012737 Uniprot:E1C8H5
Length = 2434
Score = 303 (111.7 bits), Expect = 8.0e-43, Sum P(4) = 8.0e-43
Identities = 59/142 (41%), Positives = 91/142 (64%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T+ R+K FND + +F++S+KAG G+NL+ NR+++FD
Sbjct: 2021 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDAS 2080
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSS 676
WNP+ D Q+ RV+R GQ K VF+YRFL+ GT+E+K+Y RQ++K+ L +V+ Q+Q +
Sbjct: 2081 WNPSYDIQSIFRVYRFGQSKPVFVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERH 2140
Query: 677 ATQGNFLSTEDLRDLFTFHDDV 698
T +L +L+TF D+
Sbjct: 2141 FTMN------ELTELYTFEPDL 2156
Score = 182 (69.1 bits), Expect = 8.0e-43, Sum P(4) = 8.0e-43
Identities = 63/192 (32%), Positives = 94/192 (48%)
Query: 174 ITVDPLLVRFLRPHQREGVQFMFEC----VSGLLNAAGIHGCILADDMGLGKTLQSIALL 229
+ V +V L+PHQ +GVQFM++C V + G GCILA MGLGKTLQ ++ L
Sbjct: 1492 VQVHRSIVTRLKPHQVDGVQFMWDCCCESVKKTKTSPG-SGCILAHCMGLGKTLQVVSFL 1550
Query: 230 YT-LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRV--QLIALCE-ST--RDDV 283
+T LLC K + A++V P + NW E +KW G + + +CE +T R
Sbjct: 1551 HTVLLCD----KLNFRTALVVCPLNTALNWLNEFEKWQEGLEDDEKLEVCELATVKRPQE 1606
Query: 284 VSG-IDSFTDPCSSLQVLIVSYETFR-------MHSSKFS-------CSESCDLLICDEA 328
S + + D V+I+ YE +R + S K D ++CDE
Sbjct: 1607 RSYMLQRWQDEGG---VMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEG 1663
Query: 329 HRLKNDQTLTNR 340
H LKN+ + ++
Sbjct: 1664 HILKNEASAVSK 1675
Score = 116 (45.9 bits), Expect = 8.0e-43, Sum P(4) = 8.0e-43
Identities = 38/149 (25%), Positives = 68/149 (45%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E+ MVNF +LG FR + I G+ +T + ++ +R+ L +
Sbjct: 1694 QNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTLVDVRVMKKRAHILYEML 1753
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI-HSKNVKRAISEETKQS--K 456
+ R+ L+ LPPK V+ ++TP+Q +LY +++ H V ++ K
Sbjct: 1754 AGCVQRKDYTALTKFLPPKYEYVLEVRMTPIQCKLYQYYLDHLTGVGGGNEGGRGKAGAK 1813
Query: 457 ILAYITALKKLCNHPKLIY-DTIKSGNPG 484
+ L ++ HP + D I N G
Sbjct: 1814 LFQDFQMLSRIWTHPWCLQLDYISKENKG 1842
Score = 53 (23.7 bits), Expect = 8.0e-43, Sum P(4) = 8.0e-43
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 508 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL---FAQLC-RER 559
T D +E SGKM +L +L + + D++++ S +LDL F +L RE+
Sbjct: 1950 TDADAEVLEHSGKMVLLFEIL-RMAEELGDKVLVFSQSLISLDLIEDFLELANREK 2004
Score = 38 (18.4 bits), Expect = 5.2e-28, Sum P(4) = 5.2e-28
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 316 CSESCDLLICDEAH 329
C+E +L+ CD H
Sbjct: 219 CAEGGNLICCDFCH 232
>FB|FBgn0039338 [details] [associations]
symbol:XNP "XNP" species:7227 "Drosophila melanogaster"
[GO:0003678 "DNA helicase activity" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IMP] [GO:0008347
"glial cell migration" evidence=IMP] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0006917 "induction of apoptosis"
evidence=IMP] [GO:0046328 "regulation of JNK cascade" evidence=IGI]
[GO:0005700 "polytene chromosome" evidence=IDA] [GO:0000775
"chromosome, centromeric region" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0005722 "beta-heterochromatin"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0006336 "DNA
replication-independent nucleosome assembly" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0006917 GO:GO:0003677
GO:GO:0006281 GO:GO:0016887 GO:GO:0004386 GO:GO:0070868
GO:GO:0046328 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008347 KO:K10779 EMBL:AF217802 EMBL:AY058592
RefSeq:NP_651398.1 RefSeq:NP_733107.1 UniGene:Dm.1935
ProteinModelPortal:Q9GQN5 SMR:Q9GQN5 STRING:Q9GQN5 PaxDb:Q9GQN5
EnsemblMetazoa:FBtr0084837 EnsemblMetazoa:FBtr0084838 GeneID:43080
KEGG:dme:Dmel_CG4548 UCSC:CG4548-RA CTD:43080 FlyBase:FBgn0039338
GeneTree:ENSGT00550000074619 InParanoid:Q9GQN5 OMA:KQEYVIN
OrthoDB:EOG4ZW3S5 PhylomeDB:Q9GQN5 GenomeRNAi:43080 NextBio:832107
Bgee:Q9GQN5 GermOnline:CG4548 GO:GO:0005722 Uniprot:Q9GQN5
Length = 1311
Score = 272 (100.8 bits), Expect = 8.1e-43, Sum P(3) = 8.1e-43
Identities = 54/133 (40%), Positives = 89/133 (66%)
Query: 563 YLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPA 621
Y RLDG+ S+ +R+ + FN+ + +FL+S++AGG G+NL+ NR+V+FD WNP+
Sbjct: 963 YFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPS 1022
Query: 622 NDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGN 681
+D Q+ RV+R GQ K +IYR ++ GT+E+KVY+RQ++K+ K + EQ S +
Sbjct: 1023 HDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQISR----H 1078
Query: 682 FLSTEDLRDLFTF 694
+ T DL +L+++
Sbjct: 1079 YNQT-DLMELYSY 1090
Score = 183 (69.5 bits), Expect = 8.1e-43, Sum P(3) = 8.1e-43
Identities = 57/183 (31%), Positives = 90/183 (49%)
Query: 174 ITVDPLLVRFLRPHQREGVQFMFE-CVSGLLNAAGI--HGCILADDMGLGKTLQSIALLY 230
+ VD L++ L+PHQ GV+FM++ C L + GCILA MGLGKTLQ + L +
Sbjct: 445 LQVDKGLLKKLKPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLGKTLQVVTLSH 504
Query: 231 TLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV--GGRVQLIALCESTRDDVVSGID 288
TLL + V + +I++P S V+NW E W+ R + S D + I
Sbjct: 505 TLLVN--TRRTGVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYKDKPTRIF 562
Query: 289 SFTDPCSSLQVLIVSYETFRMHSSKFS---------------CSESCDLLICDEAHRLKN 333
+ + V I+ Y+ +R+ +++ + DL++CDE H LKN
Sbjct: 563 KLNEWFNEGGVCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLKN 622
Query: 334 DQT 336
++T
Sbjct: 623 EKT 625
Score = 142 (55.0 bits), Expect = 8.1e-43, Sum P(3) = 8.1e-43
Identities = 35/132 (26%), Positives = 65/132 (49%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ M+ F P +LG + + I G+ +TE + +L RS L +
Sbjct: 648 QNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKLL 707
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
I RR ++L+ +LPPK VV L+ LQ +LY +++ + + K +++
Sbjct: 708 EGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTTHREQSGGDVVGKGARLFQ 767
Query: 460 YITALKKLCNHP 471
L+++ HP
Sbjct: 768 DFQDLRRIWTHP 779
Score = 57 (25.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 32/135 (23%), Positives = 56/135 (41%)
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT-QGN--FLSTEDLRDLF 692
K +Y LS +++K+Y G +EQ+ +G F +DLR ++
Sbjct: 726 KHEYVVYTTLSE--LQQKLY-------GYYMTTHREQSGGDVVGKGARLFQDFQDLRRIW 776
Query: 693 TFHDDVRSEIHENMHCTRCQNYDDG-AESI--GEGDETNSANKNDQSDQEVTDIGGFAGL 749
T ++R +N+ R + DD E E DE +A+ + S + +GL
Sbjct: 777 THPMNLRVN-SDNVIAKRLLSNDDSDMEGFICDETDEDEAASNSSDSCETFKSDASMSGL 835
Query: 750 AGCLHKLKSSEKQLG 764
A K+K + + G
Sbjct: 836 AASSGKVKKRKTRNG 850
>WB|WBGene00006961 [details] [associations]
symbol:xnp-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0040025 "vulval development" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006915 GO:GO:0008406
GO:GO:0003677 GO:GO:0006281 GO:GO:0040035 GO:GO:0004386
GO:GO:0040025 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AF134186 EMBL:FO080106 PIR:T34036
RefSeq:NP_001020958.1 ProteinModelPortal:Q9U7E0 SMR:Q9U7E0
STRING:Q9U7E0 PaxDb:Q9U7E0 GeneID:172077 KEGG:cel:CELE_B0041.7
UCSC:B0041.7 CTD:172077 WormBase:B0041.7 HOGENOM:HOG000199608
InParanoid:Q9U7E0 KO:K10779 NextBio:873923 Uniprot:Q9U7E0
Length = 1359
Score = 264 (98.0 bits), Expect = 8.6e-43, Sum P(4) = 8.6e-43
Identities = 51/133 (38%), Positives = 84/133 (63%)
Query: 563 YLRLDGTTSISKRQKLVNHFNDP-SKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPA 621
Y+ +DG+ KR + FNDP + + L+S++AG G N++ NR+++FD WNP+
Sbjct: 1016 YMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRVIIFDACWNPS 1075
Query: 622 NDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGN 681
+D Q+ RV+R GQ K V+IYRF++ GT+EE++Y+RQ++KE + D + Q +
Sbjct: 1076 HDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRV----VDEAQIQRH 1131
Query: 682 FLSTEDLRDLFTF 694
+L DL +L+ F
Sbjct: 1132 YLGN-DLTELYQF 1143
Score = 195 (73.7 bits), Expect = 8.6e-43, Sum P(4) = 8.6e-43
Identities = 43/112 (38%), Positives = 63/112 (56%)
Query: 157 VLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGC--ILA 214
V+ P+ D + P+ V LVR L+PHQ G+QFM++C L+ G ILA
Sbjct: 436 VVLDPDSSTVDEESKKPVEVHNSLVRILKPHQAHGIQFMYDCACESLDRLDTEGSGGILA 495
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
MGLGKTLQ I L+T+L G+ K+ ++V P +++ NW E +KW+
Sbjct: 496 HCMGLGKTLQVITFLHTVLMHEKIGEKC-KRVLVVVPKNVIINWFKEFQKWL 546
Score = 116 (45.9 bits), Expect = 8.6e-43, Sum P(4) = 8.6e-43
Identities = 31/101 (30%), Positives = 48/101 (47%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E+ MVNF PG+LG F + I GR A+ E R L +
Sbjct: 669 QNNLMEYHCMVNFVKPGLLGTKTEFANRFVNIINRGRTKDASPLEVSFMKRRCHVLYDHL 728
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIH 440
+ + R+ +L+ +PPK V+ + T Q LYN F++
Sbjct: 729 KKCVDRKDYRVLTEAIPPKQEYVINVRQTERQCALYNAFLN 769
Score = 69 (29.3 bits), Expect = 8.6e-43, Sum P(4) = 8.6e-43
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 321 DLLICDEAHRLKNDQTLTNR 340
D+++CDEAH+LKND + ++
Sbjct: 631 DMVVCDEAHKLKNDDSALSK 650
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 338 (124.0 bits), Expect = 9.4e-43, Sum P(2) = 9.4e-43
Identities = 85/248 (34%), Positives = 134/248 (54%)
Query: 424 CCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSG-- 481
CC+ +++ ++H N + +L + L+++ NH +LI K
Sbjct: 433 CCRRIVPDGTIWS-YLHRDNHDGC--DSCPFCLVLPCLMKLQQISNHLELIKPNPKDEPE 489
Query: 482 -NPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIV 540
F + ++ G S S + D + V+ GKM L +L+ + D+I+
Sbjct: 490 KQKKDAEFVSTVFGTDIDLLGGISASKSFMDLSDVKHCGKMRALEKLMASWISK-GDKIL 548
Query: 541 LVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFN-DPSKNEFVFLLSSKAG 599
L S + LD+ + + Y + RLDG+T + RQ LV+ FN PSK VFL+S+KAG
Sbjct: 549 LFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQ--VFLISTKAG 606
Query: 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659
G GLNL+ NR+V+FDP+WNP++D QA R +R GQK+ V ++R LS G++EE VY RQ+
Sbjct: 607 GLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYTRQV 666
Query: 660 SKEGLQKV 667
K+ L +
Sbjct: 667 YKQQLSNI 674
Score = 200 (75.5 bits), Expect = 9.4e-43, Sum P(2) = 9.4e-43
Identities = 72/300 (24%), Positives = 135/300 (45%)
Query: 172 VPITVDPLLVRF-LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
+PI P + L HQREGV+FM+ N GI G + + +T+ +A +Y
Sbjct: 126 IPIIHVPASINCRLLEHQREGVKFMYNLYKN--NHGGILGDDMGLGKTI-QTIAFLAAVY 182
Query: 231 TLLCQGFDGKPMVKK---AIIVTPTSLVSNWEAEIKKWVG----------GRVQLIALCE 277
+ + +I+ P+S++ NWE+E +W R ++ +
Sbjct: 183 GKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYHGSNRDMILEKLK 242
Query: 278 STRDDV-VSGIDSFT--DPC-SSLQ-VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLK 332
+ +V V+ D+F P S + ++++ E R+ + K E+C L R+
Sbjct: 243 ARGVEVLVTSFDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEAC--LEIKTKKRIG 300
Query: 333 NDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERS 392
T+ +N + E F + + PG LG +FR +Y+ + G+ TA E ++ +R
Sbjct: 301 LTGTVM-QNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRK 359
Query: 393 SELSAKVNQFILRRTNALLSNHLPP-KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEE 451
L + + +++LRRT HL K VV C+++ LQ +Y I ++ ++++
Sbjct: 360 QHLGSLLRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQRMIQLPEIQCLVNKD 419
Score = 42 (19.8 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 14/70 (20%), Positives = 28/70 (40%)
Query: 644 FLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIH 703
F ++ +VYQR + +Q ++ + D+ G+ L + + S +H
Sbjct: 392 FCQMSQLQRRVYQRMIQLPEIQCLVNK---DNPCACGSPLKQSECCRRIVPDGTIWSYLH 448
Query: 704 ENMH--CTRC 711
+ H C C
Sbjct: 449 RDNHDGCDSC 458
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 329 (120.9 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 65/164 (39%), Positives = 103/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+
Sbjct: 780 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 838
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 839 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 898
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ G++EE + +R K L ++ Q + T
Sbjct: 899 QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT 942
Score = 218 (81.8 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 75/274 (27%), Positives = 134/274 (48%)
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
+ CILAD+MGLGKT+Q+I+ L L F + ++V P S +++W+ EI+ W
Sbjct: 496 NSCILADEMGLGKTIQTISFLNYL----FHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQ 551
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICD 326
++ L + T +++ + L+ +L+ +YE + F + + D
Sbjct: 552 MNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEIL-LKDKSFLGGLNWAFIGVD 610
Query: 327 EAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEE-EK 385
EAHRLKND +L + L +F + G + + I + ++ E+ E+
Sbjct: 611 EAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 669
Query: 386 KLGIERS---SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK 442
+ G R + L ++ F+LRR + LP K+ +++ +++ LQ + Y +I ++
Sbjct: 670 EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK-WILTR 728
Query: 443 NVKRAISEETKQSK--ILAYITALKKLCNHPKLI 474
N K A+S+ +K S L + LKK CNH LI
Sbjct: 729 NYK-ALSKGSKGSTSGFLNIMMELKKCCNHCYLI 761
Score = 37 (18.1 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 373 ICGREPTATEEEKKLGIER 391
+CG + TEE++ IE+
Sbjct: 254 VCGEDVPQTEEDEFETIEK 272
>UNIPROTKB|F1PKC1 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10779 GeneTree:ENSGT00550000074619 CTD:546
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 EMBL:AAEX03026550
EMBL:AAEX03026551 EMBL:AAEX03026552 EMBL:AAEX03026553
EMBL:AAEX03026554 EMBL:AAEX03026555 EMBL:AAEX03026556
RefSeq:XP_538084.2 Ensembl:ENSCAFT00000027324 GeneID:480963
KEGG:cfa:480963 Uniprot:F1PKC1
Length = 2489
Score = 299 (110.3 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 58/142 (40%), Positives = 91/142 (64%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T+ R+K FND + +F++S+KAG G+NL+ NR+++FD
Sbjct: 2076 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDAS 2135
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSS 676
WNP+ D Q+ RV+R GQ K V++YRFL+ GT+E+K+Y RQ++K+ L +V+ Q+Q +
Sbjct: 2136 WNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERH 2195
Query: 677 ATQGNFLSTEDLRDLFTFHDDV 698
T +L +L+TF D+
Sbjct: 2196 FTMN------ELTELYTFEPDL 2211
Score = 179 (68.1 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 66/214 (30%), Positives = 101/214 (47%)
Query: 151 PGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFEC----VSGLLNAA 206
P LVL + EE + LV + + ++++ L+PHQ +GVQFM++C V +
Sbjct: 1528 PITTKLVLDEDEETKEP---LVQVHRN-MVIK-LKPHQVDGVQFMWDCCCESVKKTKKSP 1582
Query: 207 GIHGCILADDMGLGKTLQSIALLYT-LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265
G GCILA MGLGKTLQ ++ L+T LLC D A++V P + NW E +KW
Sbjct: 1583 G-SGCILAHCMGLGKTLQVVSFLHTVLLCDKLD----FSTALVVCPLNTALNWMNEFEKW 1637
Query: 266 VGG-----RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFR-------MHSSK 313
G ++++ L R S + V+I+ YE +R + S K
Sbjct: 1638 QEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGG--VMIIGYEMYRNLAQGRNVKSRK 1695
Query: 314 FS-------CSESCDLLICDEAHRLKNDQTLTNR 340
D ++CDE H LKN+ + ++
Sbjct: 1696 LKEIFNKALVDPGPDFVVCDEGHILKNEASAVSK 1729
Score = 122 (48.0 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 38/149 (25%), Positives = 69/149 (46%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E+ MVNF +LG FR + I G+ +T + ++ +R+ L +
Sbjct: 1748 QNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEML 1807
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI-HSKNVKRAISEETKQS--K 456
+ R+ L+ LPPK V+ ++TP+Q +LY +++ H V + ++ K
Sbjct: 1808 AGCVQRKDYTALTKFLPPKHEYVLAVRMTPIQCKLYQYYLDHLTGVGNSNEGGRGKAGAK 1867
Query: 457 ILAYITALKKLCNHPKLIY-DTIKSGNPG 484
+ L ++ HP + D I N G
Sbjct: 1868 LFQDFQMLSRIWTHPWCLQLDYISKENKG 1896
Score = 53 (23.7 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 508 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL---FAQLC-RER 559
T D +E SGKM +L +L + + D++++ S +LDL F +L RE+
Sbjct: 2004 TDADAEILEHSGKMVLLFEIL-RMAEEIGDKVLVFSQSLISLDLIEDFLELASREK 2058
Score = 38 (18.4 bits), Expect = 3.8e-28, Sum P(4) = 3.8e-28
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 316 CSESCDLLICDEAH 329
C+E +L+ CD H
Sbjct: 222 CAEGGNLICCDFCH 235
Score = 38 (18.4 bits), Expect = 1.4e-19, Sum P(4) = 1.4e-19
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 412 SNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK 456
S HL K+ C K+ S++ +F + + ++ KQSK
Sbjct: 947 SKHLKTKM----CKKVQAGLSDILENFPKKEQSDESSEDDKKQSK 987
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 329 (120.9 bits), Expect = 2.9e-42, Sum P(2) = 2.9e-42
Identities = 65/164 (39%), Positives = 103/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+
Sbjct: 783 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 841
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 842 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 901
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ G++EE + +R K L ++ Q + T
Sbjct: 902 QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT 945
Score = 214 (80.4 bits), Expect = 2.9e-42, Sum P(2) = 2.9e-42
Identities = 74/274 (27%), Positives = 133/274 (48%)
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
+ CILAD+MGLGKT+Q+I+ L L F + ++V P S +++W+ EI+ W
Sbjct: 499 NSCILADEMGLGKTIQTISFLNYL----FHEHQLYGPFLLVVPLSTLTSWQREIQTWASQ 554
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICD 326
++ L + +++ + L+ +L+ +YE + F + + D
Sbjct: 555 MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL-LKDKAFLGGLNWAFIGVD 613
Query: 327 EAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEE-EK 385
EAHRLKND +L + L +F + G + + I + ++ E+ E+
Sbjct: 614 EAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 672
Query: 386 KLGIERS---SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK 442
+ G R + L ++ F+LRR + LP K+ +++ +++ LQ + Y +I ++
Sbjct: 673 EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK-WILTR 731
Query: 443 NVKRAISEETKQSK--ILAYITALKKLCNHPKLI 474
N K A+S+ +K S L + LKK CNH LI
Sbjct: 732 NYK-ALSKGSKGSTSGFLNIMMELKKCCNHCYLI 764
Score = 37 (18.1 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 373 ICGREPTATEEEKKLGIER 391
+CG + EEE+ IER
Sbjct: 257 VCGEDVPQPEEEEFETIER 275
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 329 (120.9 bits), Expect = 2.9e-42, Sum P(2) = 2.9e-42
Identities = 65/164 (39%), Positives = 103/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+
Sbjct: 782 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 840
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 841 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 900
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ G++EE + +R K L ++ Q + T
Sbjct: 901 QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT 944
Score = 214 (80.4 bits), Expect = 2.9e-42, Sum P(2) = 2.9e-42
Identities = 74/274 (27%), Positives = 133/274 (48%)
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
+ CILAD+MGLGKT+Q+I+ L L F + ++V P S +++W+ EI+ W
Sbjct: 498 NSCILADEMGLGKTIQTISFLNYL----FHEHQLYGPFLLVVPLSTLTSWQREIQTWASQ 553
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICD 326
++ L + +++ + L+ +L+ +YE + F + + D
Sbjct: 554 MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL-LKDKAFLGGLNWAFIGVD 612
Query: 327 EAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEE-EK 385
EAHRLKND +L + L +F + G + + I + ++ E+ E+
Sbjct: 613 EAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 671
Query: 386 KLGIERS---SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK 442
+ G R + L ++ F+LRR + LP K+ +++ +++ LQ + Y +I ++
Sbjct: 672 EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK-WILTR 730
Query: 443 NVKRAISEETKQSK--ILAYITALKKLCNHPKLI 474
N K A+S+ +K S L + LKK CNH LI
Sbjct: 731 NYK-ALSKGSKGSTSGFLNIMMELKKCCNHCYLI 763
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 329 (120.9 bits), Expect = 3.2e-42, Sum P(2) = 3.2e-42
Identities = 65/164 (39%), Positives = 103/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+
Sbjct: 766 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 824
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 825 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 884
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ G++EE + +R K L ++ Q + T
Sbjct: 885 QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT 928
Score = 214 (80.4 bits), Expect = 3.2e-42, Sum P(2) = 3.2e-42
Identities = 74/274 (27%), Positives = 133/274 (48%)
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
+ CILAD+MGLGKT+Q+I+ L L F + ++V P S +++W+ EI+ W
Sbjct: 482 NSCILADEMGLGKTIQTISFLNYL----FHEHQLYGPFLLVVPLSTLTSWQREIQTWASQ 537
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICD 326
++ L + +++ + L+ +L+ +YE + F + + D
Sbjct: 538 MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL-LKDKAFLGGLNWAFIGVD 596
Query: 327 EAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEE-EK 385
EAHRLKND +L + L +F + G + + I + ++ E+ E+
Sbjct: 597 EAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 655
Query: 386 KLGIERS---SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK 442
+ G R + L ++ F+LRR + LP K+ +++ +++ LQ + Y +I ++
Sbjct: 656 EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK-WILTR 714
Query: 443 NVKRAISEETKQSK--ILAYITALKKLCNHPKLI 474
N K A+S+ +K S L + LKK CNH LI
Sbjct: 715 NYK-ALSKGSKGSTSGFLNIMMELKKCCNHCYLI 747
Score = 37 (18.1 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 373 ICGREPTATEEEKKLGIER 391
+CG + EEE+ IER
Sbjct: 240 VCGEDVPQPEEEEFETIER 258
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 329 (120.9 bits), Expect = 3.4e-42, Sum P(2) = 3.4e-42
Identities = 65/164 (39%), Positives = 103/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+
Sbjct: 796 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 854
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 855 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 914
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ G++EE + +R K L ++ Q + T
Sbjct: 915 QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT 958
Score = 214 (80.4 bits), Expect = 3.4e-42, Sum P(2) = 3.4e-42
Identities = 74/274 (27%), Positives = 133/274 (48%)
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
+ CILAD+MGLGKT+Q+I+ L L F + ++V P S +++W+ EI+ W
Sbjct: 512 NSCILADEMGLGKTIQTISFLNYL----FHEHQLYGPFLLVVPLSTLTSWQREIQTWASQ 567
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICD 326
++ L + +++ + L+ +L+ +YE + F + + D
Sbjct: 568 MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL-LKDKAFLGGLNWAFIGVD 626
Query: 327 EAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEE-EK 385
EAHRLKND +L + L +F + G + + I + ++ E+ E+
Sbjct: 627 EAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 685
Query: 386 KLGIERS---SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK 442
+ G R + L ++ F+LRR + LP K+ +++ +++ LQ + Y +I ++
Sbjct: 686 EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK-WILTR 744
Query: 443 NVKRAISEETKQSK--ILAYITALKKLCNHPKLI 474
N K A+S+ +K S L + LKK CNH LI
Sbjct: 745 NYK-ALSKGSKGSTSGFLNIMMELKKCCNHCYLI 777
Score = 37 (18.1 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 373 ICGREPTATEEEKKLGIER 391
+CG + EEE+ IER
Sbjct: 257 VCGEDVPQPEEEEFETIER 275
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 308 (113.5 bits), Expect = 4.2e-42, Sum P(2) = 4.2e-42
Identities = 69/148 (46%), Positives = 93/148 (62%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK VL +L L+Q+ DR+VL S +T LD+ L + ++ YLRLDG T IS+R
Sbjct: 856 SGKFRVLGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 914
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L++ FN + FVFLLS+KAGG G+NL N ++L D D NP NDKQA R R GQ K
Sbjct: 915 LIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 973
Query: 638 RVFIYRFLSTGTIEE---KVYQRQMSKE 662
V + + +S GTIEE K+ Q+++ E
Sbjct: 974 EVLVIKLISQGTIEESMLKINQQKLKLE 1001
Score = 228 (85.3 bits), Expect = 4.2e-42, Sum P(2) = 4.2e-42
Identities = 88/316 (27%), Positives = 145/316 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q+ G+ ++ L++ G++G ILAD+MGLGKT+Q+IA L L +G G P
Sbjct: 500 LKPYQKVGLNWL-----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKG-PH- 551
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC----ESTRDDVVSGIDSFTDPCSSLQV 299
+IV P S + NW E+ W L LC + R + I S + V
Sbjct: 552 ---LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYE---EYNV 602
Query: 300 LIVSYETFRMHSSKFSCSESCDL--LICDEAHRLKN------DQTLT----NR------- 340
++ +Y S S L I DE H LKN +T NR
Sbjct: 603 IVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTP 662
Query: 341 --NDLEEFFAMVNFTNPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
N+L E +++NF P + + + RR + + E + E+E+ I + ++
Sbjct: 663 VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHAKQI-- 717
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ FILRR + LPPK ++ C ++ Q +LY + +K++I+ K +++
Sbjct: 718 -IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFN--RLKKSINNMEKNTEM 774
Query: 458 LAYITALKKLCNHPKL 473
+ L+K+ NHP L
Sbjct: 775 CNVMMQLRKMANHPLL 790
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 329 (120.9 bits), Expect = 4.7e-42, Sum P(2) = 4.7e-42
Identities = 65/164 (39%), Positives = 103/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+
Sbjct: 784 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 842
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 843 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 902
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ G++EE + +R K L ++ Q + T
Sbjct: 903 QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT 946
Score = 212 (79.7 bits), Expect = 4.7e-42, Sum P(2) = 4.7e-42
Identities = 74/274 (27%), Positives = 133/274 (48%)
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
+ CILAD+MGLGKT+Q+I+ L L F + ++V P S +++W+ EI+ W
Sbjct: 500 NSCILADEMGLGKTIQTISFLNYL----FHEHQLYGPFLLVVPLSTLTSWQREIQTWASQ 555
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICD 326
++ L + +++ + L+ +L+ +YE + F + + D
Sbjct: 556 MNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEIL-LKDKAFLGGLNWAFIGVD 614
Query: 327 EAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEE-EK 385
EAHRLKND +L + L +F + G + + I + ++ E+ E+
Sbjct: 615 EAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 673
Query: 386 KLGIERS---SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK 442
+ G R + L ++ F+LRR + LP K+ +++ +++ LQ + Y +I ++
Sbjct: 674 EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK-WILTR 732
Query: 443 NVKRAISEETKQSK--ILAYITALKKLCNHPKLI 474
N K A+S+ +K S L + LKK CNH LI
Sbjct: 733 NYK-ALSKGSKGSTSGFLNIMMELKKCCNHCYLI 765
Score = 37 (18.1 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 373 ICGREPTATEEEKKLGIER 391
+CG + EEE+ IER
Sbjct: 258 VCGEDVPQPEEEEFETIER 276
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 497 (180.0 bits), Expect = 4.7e-42, Sum P(2) = 4.7e-42
Identities = 164/533 (30%), Positives = 258/533 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N + CILAD+MGLGKT+QSI LY + +G G P
Sbjct: 918 LREYQLEGVNWL------LFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHG-PF- 969
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + F DP +V+ S
Sbjct: 970 ---LVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG--RVIKGS 1024
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKNDQTLTNRN-DLEEFFAMVNF 352
Y+ TF M + C E ++ ++ DEAHRLKN RN L E M++
Sbjct: 1025 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKN------RNCKLLEGLKMMDL 1076
Query: 353 TNPGILGDAAYFRRYYET-SIICGREPTATEEE----KKLGIERSSE----LSAKVNQFI 403
+ +L E S++ EPT E ++ G ++ E L A + +
Sbjct: 1077 EHKVLLTGTPLQNTVEELFSLLHFLEPTRFPSETTFMQEFGDLKTEEQVQKLQAILKPMM 1136
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI---LAY 460
LRR + +L PK ++ +LT +Q + Y + KN +S+ Q+ + L
Sbjct: 1137 LRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFA-FLSKGGGQANVPNLLNT 1194
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
+ L+K CNHP LI G E+ I E + S + A ++ +GK
Sbjct: 1195 MMELRKCCNHPYLI-----------NGAEEKILEEFKETHNADSPDFQLQ--AMIQAAGK 1241
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+ ++ +LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++
Sbjct: 1242 LVLIDKLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1300
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
F+ P + FVFLL ++AGG G+NL + ++FD DWNP ND QA AR R GQ K V
Sbjct: 1301 RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK 1360
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTD-SSATQG-NFLSTEDLRDL 691
IYR ++ + E +++ + K GL K + Q + +A G LS +++ DL
Sbjct: 1361 IYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIEDL 1413
Score = 42 (19.8 bits), Expect = 4.7e-42, Sum P(2) = 4.7e-42
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 683 LSTEDLRDLFTFHDDVRSEIHENM----HC---TRCQ--NYDDGAESIGE 723
LSTED F +D+ + N+ H TR N +DG +GE
Sbjct: 2477 LSTEDAEVTKAFEEDIETPPTRNIPSPGHLDPDTRIPVINLEDGTRLVGE 2526
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 481 (174.4 bits), Expect = 4.9e-42, P = 4.9e-42
Identities = 162/523 (30%), Positives = 247/523 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IA + L+ + K
Sbjct: 869 LKDYQLKGLEWMLSLYNNNLNG------ILADEMGLGKTIQTIAFITYLI----EKKNQQ 918
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC--ESTRDDVVSGIDSFTDPCSSLQVLI 301
+I+ P S ++NW E +KW V+ IA R + S I S S+ VL+
Sbjct: 919 GPFLIIVPLSTLTNWIMEFEKWAPS-VKKIAYKGPPQLRKTLQSQIRS-----SNFNVLL 972
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT-LTN-------------------RN 341
++E S + ++I DE HR+KN Q+ LT+ +N
Sbjct: 973 TTFEYIIKDRPLLSRIKWVHMII-DEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQN 1031
Query: 342 DLEEFFAMVNFTNPGILGDAAYFRRYYETSIIC--GREPTATEEEKKLGIERSSELSAKV 399
+L E +A++NF P I F ++ T G++ EE+ L I + L +
Sbjct: 1032 NLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALLIIK--RLHKVL 1089
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+ RR + LP K+ +V+ C L+ LQ +LY K+ + E ++ I
Sbjct: 1090 RPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQM--KKHGMLFVDGEKGKTGIKG 1147
Query: 460 Y---ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVE 516
+ LKK+CNHP + FED R P SG T D W
Sbjct: 1148 LQNTVMQLKKICNHPFI--------------FEDVERAIDP------SG--TNVDLLW-R 1184
Query: 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576
+GK +L R+L L T + ++ TQ + + R + + YLRLDG+T R
Sbjct: 1185 AAGKFELLDRILPKLFL-TGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRC 1243
Query: 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQK 636
L+ FNDP + ++F+LS++AGG GLNL + +++FD DWNP D QA R R GQ
Sbjct: 1244 SLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQT 1303
Query: 637 KRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSSAT 678
K V I R ++ +IEE + R K L KVIQ + D+ +T
Sbjct: 1304 KEVRILRLITEKSIEENILSRAQYKLDLDGKVIQAGKFDNKST 1346
Score = 290 (107.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 83/241 (34%), Positives = 119/241 (49%)
Query: 506 SWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLR 565
S T D W +GK +L R+L L T + ++ TQ + + R + + YLR
Sbjct: 1175 SGTNVDLLW-RAAGKFELLDRILPKLFL-TGHKTLMFFQMTQIMTIMEDYLRSKNWKYLR 1232
Query: 566 LDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQ 625
LDG+T R L+ FNDP + ++F+LS++AGG GLNL + +++FD DWNP D Q
Sbjct: 1233 LDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1292
Query: 626 AAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSSATQGNFLS 684
A R R GQ K V I R ++ +IEE + R K L KVIQ + D+ +T
Sbjct: 1293 AQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEE--R 1350
Query: 685 TEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIG 744
LR L HD + H+ + Q+ D+ E I DE K ++ TDI
Sbjct: 1351 EAFLRSLLE-HDG--DDDHDLTY-GELQD-DELNELISRTDEELVLFKKLDKERAATDIY 1405
Query: 745 G 745
G
Sbjct: 1406 G 1406
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 308 (113.5 bits), Expect = 5.3e-42, Sum P(2) = 5.3e-42
Identities = 69/148 (46%), Positives = 93/148 (62%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK VL +L L+Q+ DR+VL S +T LD+ L + ++ YLRLDG T IS+R
Sbjct: 853 SGKFRVLGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L++ FN + FVFLLS+KAGG G+NL N ++L D D NP NDKQA R R GQ K
Sbjct: 912 LIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
Query: 638 RVFIYRFLSTGTIEE---KVYQRQMSKE 662
V + + +S GTIEE K+ Q+++ E
Sbjct: 971 EVLVIKLISQGTIEESMLKINQQKLKLE 998
Score = 227 (85.0 bits), Expect = 5.3e-42, Sum P(2) = 5.3e-42
Identities = 88/316 (27%), Positives = 145/316 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q+ G+ ++ L++ G++G ILAD+MGLGKT+Q+IA L L +G G P
Sbjct: 497 LKPYQKVGLNWL-----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKG-PH- 548
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC----ESTRDDVVSGIDSFTDPCSSLQV 299
+IV P S + NW E+ W L LC + R + I S + V
Sbjct: 549 ---LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYE---EYNV 599
Query: 300 LIVSYETFRMHSSKFSCSESCDL--LICDEAHRLKN------DQTLT----NR------- 340
++ +Y S S L I DE H LKN +T NR
Sbjct: 600 IVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTP 659
Query: 341 --NDLEEFFAMVNFTNPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
N+L E +++NF P + + + RR + + E + E+E+ I + ++
Sbjct: 660 VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHAKQI-- 714
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ FILRR + LPPK ++ C ++ Q +LY + +K++I+ K +++
Sbjct: 715 -IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFN--RLKKSINNIEKSTEM 771
Query: 458 LAYITALKKLCNHPKL 473
+ L+K+ NHP L
Sbjct: 772 CNVMMQLRKMANHPLL 787
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 308 (113.5 bits), Expect = 5.3e-42, Sum P(2) = 5.3e-42
Identities = 69/148 (46%), Positives = 93/148 (62%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK VL +L L+Q+ DR+VL S +T LD+ L + ++ YLRLDG T IS+R
Sbjct: 853 SGKFRVLGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L++ FN + FVFLLS+KAGG G+NL N ++L D D NP NDKQA R R GQ K
Sbjct: 912 LIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
Query: 638 RVFIYRFLSTGTIEE---KVYQRQMSKE 662
V + + +S GTIEE K+ Q+++ E
Sbjct: 971 EVLVIKLISQGTIEESMLKINQQKLKLE 998
Score = 227 (85.0 bits), Expect = 5.3e-42, Sum P(2) = 5.3e-42
Identities = 88/316 (27%), Positives = 145/316 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q+ G+ ++ L++ G++G ILAD+MGLGKT+Q+IA L L +G G P
Sbjct: 497 LKPYQKVGLNWL-----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKG-PH- 548
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC----ESTRDDVVSGIDSFTDPCSSLQV 299
+IV P S + NW E+ W L LC + R + I S + V
Sbjct: 549 ---LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYE---EYNV 599
Query: 300 LIVSYETFRMHSSKFSCSESCDL--LICDEAHRLKN------DQTLT----NR------- 340
++ +Y S S L I DE H LKN +T NR
Sbjct: 600 IVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTP 659
Query: 341 --NDLEEFFAMVNFTNPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
N+L E +++NF P + + + RR + + E + E+E+ I + ++
Sbjct: 660 VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHAKQI-- 714
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ FILRR + LPPK ++ C ++ Q +LY + +K++I+ K +++
Sbjct: 715 -IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFN--RLKKSINNIEKSTEM 771
Query: 458 LAYITALKKLCNHPKL 473
+ L+K+ NHP L
Sbjct: 772 CNVMMQLRKMANHPLL 787
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 308 (113.5 bits), Expect = 5.3e-42, Sum P(2) = 5.3e-42
Identities = 69/148 (46%), Positives = 93/148 (62%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK VL +L L+Q+ DR+VL S +T LD+ L + ++ YLRLDG T IS+R
Sbjct: 853 SGKFRVLGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L++ FN + FVFLLS+KAGG G+NL N ++L D D NP NDKQA R R GQ K
Sbjct: 912 LIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
Query: 638 RVFIYRFLSTGTIEE---KVYQRQMSKE 662
V + + +S GTIEE K+ Q+++ E
Sbjct: 971 EVLVIKLISQGTIEESMLKINQQKLKLE 998
Score = 227 (85.0 bits), Expect = 5.3e-42, Sum P(2) = 5.3e-42
Identities = 88/316 (27%), Positives = 145/316 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q+ G+ ++ L++ G++G ILAD+MGLGKT+Q+IA L L +G G P
Sbjct: 497 LKPYQKVGLNWL-----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKG-PH- 548
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC----ESTRDDVVSGIDSFTDPCSSLQV 299
+IV P S + NW E+ W L LC + R + I S + V
Sbjct: 549 ---LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYE---EYNV 599
Query: 300 LIVSYETFRMHSSKFSCSESCDL--LICDEAHRLKN------DQTLT----NR------- 340
++ +Y S S L I DE H LKN +T NR
Sbjct: 600 IVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTP 659
Query: 341 --NDLEEFFAMVNFTNPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
N+L E +++NF P + + + RR + + E + E+E+ I + ++
Sbjct: 660 VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHAKQI-- 714
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ FILRR + LPPK ++ C ++ Q +LY + +K++I+ K +++
Sbjct: 715 -IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFN--RLKKSINNIEKSTEM 771
Query: 458 LAYITALKKLCNHPKL 473
+ L+K+ NHP L
Sbjct: 772 CNVMMQLRKMANHPLL 787
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 308 (113.5 bits), Expect = 5.3e-42, Sum P(2) = 5.3e-42
Identities = 69/148 (46%), Positives = 93/148 (62%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK VL +L L+Q+ DR+VL S +T LD+ L + ++ YLRLDG T IS+R
Sbjct: 853 SGKFRVLGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L++ FN + FVFLLS+KAGG G+NL N ++L D D NP NDKQA R R GQ K
Sbjct: 912 LIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
Query: 638 RVFIYRFLSTGTIEE---KVYQRQMSKE 662
V + + +S GTIEE K+ Q+++ E
Sbjct: 971 EVLVIKLISQGTIEESMLKINQQKLKLE 998
Score = 227 (85.0 bits), Expect = 5.3e-42, Sum P(2) = 5.3e-42
Identities = 88/316 (27%), Positives = 145/316 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q+ G+ ++ L++ G++G ILAD+MGLGKT+Q+IA L L +G +G P
Sbjct: 497 LKPYQKVGLNWL-----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNNG-PH- 548
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC----ESTRDDVVSGIDSFTDPCSSLQV 299
+IV P S + NW E+ W L LC + R + I S + V
Sbjct: 549 ---LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRFNIHSRYE---DYNV 599
Query: 300 LIVSYETFRMHSSKFSCSESCDL--LICDEAHRLKN------DQTLT----NR------- 340
++ +Y S S L I DE H LKN +T NR
Sbjct: 600 IVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTP 659
Query: 341 --NDLEEFFAMVNFTNPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
N+L E +++NF P + + + RR + + E + E+E+ I + ++
Sbjct: 660 VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHAKQI-- 714
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ FILRR + LPPK + C ++ Q +LY + +K++I+ K +++
Sbjct: 715 -IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFN--RLKKSINNLEKNTEM 771
Query: 458 LAYITALKKLCNHPKL 473
+ L+K+ NHP L
Sbjct: 772 CNVMMQLRKMANHPLL 787
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 279 (103.3 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 67/173 (38%), Positives = 95/173 (54%)
Query: 497 PEMFSG-RSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G + GD +E SGK+H+L +LL L + R++L S TQ LD+
Sbjct: 327 PYLFDGVEPEPFEIGDHL-IEASGKLHLLDKLLAFLYSK-GHRVLLFSQMTQMLDILQDY 384
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
R Y Y R+DG+ +R + +F + F FLLS++AGG G+NL + ++ FD
Sbjct: 385 LDYRGYSYERVDGSVRGEERHLAIKNFGQ--QPIFTFLLSTRAGGVGMNLTAADTVIFFD 442
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
D+NP ND QAAAR R GQ K V + R + T+EE VY++ SK L I
Sbjct: 443 SDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTI 495
Score = 255 (94.8 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 86/305 (28%), Positives = 152/305 (49%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LRP+Q +GV ++ +C +GCIL D+MGLGKT Q+IAL L + D P
Sbjct: 48 LRPYQLQGVNWLAQCFHCQ------NGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPF- 100
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+I+ P S++SNW+ E++++ G L + + D + + S VL+ +
Sbjct: 101 ---LILCPLSVLSNWKEEMERFAPG---LSCVTYAGDKDKRACLQQDLKQESRFHVLLTT 154
Query: 304 YETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEF---FAMVNFTNP--GIL 358
YE + + F S +L+ DEAHRLKN +L ++ L EF F+++ P L
Sbjct: 155 YEIC-LKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKT-LSEFSVVFSLLLTGTPIQNSL 212
Query: 359 GDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ----FILRRTNALLSNH 414
+ + E + +E ++ IE+ SE ++++ + F+LRR A ++
Sbjct: 213 QELYSLLSFVEPDLF-SKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATE 271
Query: 415 LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLI 474
LP K V+ ++ LQ + Y + K++ +E K+ K+ ++ L+K +HP L
Sbjct: 272 LPRKTEVVIYHGMSALQKKYYKAIL-MKDLDAFENETAKKVKLQNVLSQLRKCVDHPYL- 329
Query: 475 YDTIK 479
+D ++
Sbjct: 330 FDGVE 334
>UNIPROTKB|P46100 [details] [associations]
symbol:ATRX "Transcriptional regulator ATRX" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=TAS] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0005720 "nuclear
heterochromatin" evidence=TAS] [GO:0006306 "DNA methylation"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070087 "chromo shadow domain binding" evidence=IPI]
[GO:0032508 "DNA duplex unwinding" evidence=TAS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005720 GO:GO:0030900 GO:GO:0003682
GO:GO:0006310 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0006306 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
DrugBank:DB00144 EMBL:CH471104 KO:K10779 EMBL:U72937 EMBL:U72938
EMBL:U72935 EMBL:U72904 EMBL:U72905 EMBL:U72907 EMBL:U72908
EMBL:U72909 EMBL:U72910 EMBL:U72911 EMBL:U72912 EMBL:U72913
EMBL:U72914 EMBL:U72915 EMBL:U72916 EMBL:U72917 EMBL:U72918
EMBL:U72919 EMBL:U72920 EMBL:U72921 EMBL:U72922 EMBL:U72923
EMBL:U72924 EMBL:U72925 EMBL:U72926 EMBL:U72927 EMBL:U72928
EMBL:U72929 EMBL:U72930 EMBL:U72931 EMBL:U72932 EMBL:U72933
EMBL:U72934 EMBL:U72936 EMBL:U75653 EMBL:U97103 EMBL:AF000157
EMBL:AF000158 EMBL:AF000159 EMBL:AF000160 EMBL:U97080 EMBL:U97081
EMBL:U97082 EMBL:U97083 EMBL:U97084 EMBL:U97085 EMBL:U97086
EMBL:U97087 EMBL:U97088 EMBL:U97089 EMBL:U97090 EMBL:U97091
EMBL:U97092 EMBL:U97093 EMBL:U97094 EMBL:U97095 EMBL:U97096
EMBL:U97097 EMBL:U97098 EMBL:U97099 EMBL:U97100 EMBL:U97101
EMBL:U97102 EMBL:AB102641 EMBL:AB101681 EMBL:AB101682 EMBL:AB101683
EMBL:AB101685 EMBL:AB101687 EMBL:AB101689 EMBL:AB101691
EMBL:AB101693 EMBL:AB101695 EMBL:AB101700 EMBL:AB101699
EMBL:AB101698 EMBL:AB101697 EMBL:AB101696 EMBL:AB101694
EMBL:AB101692 EMBL:AB101690 EMBL:AB101688 EMBL:AB101686
EMBL:AB101684 EMBL:AB208928 EMBL:AB209545 EMBL:AL121874
EMBL:AL109753 EMBL:Z84487 EMBL:U09820 EMBL:L34363 EMBL:X83753
IPI:IPI00220109 IPI:IPI00297633 IPI:IPI00845355 IPI:IPI00883721
IPI:IPI00938010 IPI:IPI00940810 PIR:I38614 PIR:I54367
RefSeq:NP_000480.2 RefSeq:NP_612114.1 UniGene:Hs.533526
UniGene:Hs.653797 PDB:2JM1 PDB:2LBM PDB:2LD1 PDB:3QL9 PDB:3QLA
PDB:3QLC PDB:3QLN PDBsum:2JM1 PDBsum:2LBM PDBsum:2LD1 PDBsum:3QL9
PDBsum:3QLA PDBsum:3QLC PDBsum:3QLN ProteinModelPortal:P46100
SMR:P46100 DIP:DIP-31532N IntAct:P46100 MINT:MINT-1186201
STRING:P46100 PhosphoSite:P46100 DMDM:311033500 PaxDb:P46100
PRIDE:P46100 DNASU:546 Ensembl:ENST00000373344
Ensembl:ENST00000395603 GeneID:546 KEGG:hsa:546 UCSC:uc004eco.4
UCSC:uc004ecq.4 UCSC:uc004ecr.2 CTD:546 GeneCards:GC0XM076760
H-InvDB:HIX0176765 HGNC:HGNC:886 HPA:CAB009372 HPA:HPA001906
MIM:300032 MIM:300448 MIM:301040 MIM:309580 neXtProt:NX_P46100
Orphanet:847 Orphanet:231401 Orphanet:93973 Orphanet:93971
Orphanet:93970 Orphanet:93972 Orphanet:93974 Orphanet:3423
PharmGKB:PA25179 HOVERGEN:HBG000104 InParanoid:P46100 OMA:GEGKWFR
OrthoDB:EOG4PVNXQ PhylomeDB:P46100 EvolutionaryTrace:P46100
GenomeRNAi:546 NextBio:2259 ArrayExpress:P46100 Bgee:P46100
CleanEx:HS_RAD54L Genevestigator:P46100 GermOnline:ENSG00000085224
InterPro:IPR025766 PROSITE:PS51533 Uniprot:P46100
Length = 2492
Score = 299 (110.3 bits), Expect = 6.3e-42, Sum P(4) = 6.3e-42
Identities = 58/142 (40%), Positives = 91/142 (64%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T+ R+K FND + +F++S+KAG G+NL+ NR+++FD
Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDAS 2138
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSS 676
WNP+ D Q+ RV+R GQ K V++YRFL+ GT+E+K+Y RQ++K+ L +V+ Q+Q +
Sbjct: 2139 WNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERH 2198
Query: 677 ATQGNFLSTEDLRDLFTFHDDV 698
T +L +L+TF D+
Sbjct: 2199 FTMN------ELTELYTFEPDL 2214
Score = 179 (68.1 bits), Expect = 6.3e-42, Sum P(4) = 6.3e-42
Identities = 66/214 (30%), Positives = 101/214 (47%)
Query: 151 PGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFEC----VSGLLNAA 206
P LVL + EE + LV + + ++++ L+PHQ +GVQFM++C V +
Sbjct: 1532 PITTKLVLDEDEETKEP---LVQVHRN-MVIK-LKPHQVDGVQFMWDCCCESVKKTKKSP 1586
Query: 207 GIHGCILADDMGLGKTLQSIALLYT-LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265
G GCILA MGLGKTLQ ++ L+T LLC D A++V P + NW E +KW
Sbjct: 1587 G-SGCILAHCMGLGKTLQVVSFLHTVLLCDKLD----FSTALVVCPLNTALNWMNEFEKW 1641
Query: 266 VGG-----RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFR-------MHSSK 313
G ++++ L R S + V+I+ YE +R + S K
Sbjct: 1642 QEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGG--VMIIGYEMYRNLAQGRNVKSRK 1699
Query: 314 FS-------CSESCDLLICDEAHRLKNDQTLTNR 340
D ++CDE H LKN+ + ++
Sbjct: 1700 LKEIFNKALVDPGPDFVVCDEGHILKNEASAVSK 1733
Score = 115 (45.5 bits), Expect = 6.3e-42, Sum P(4) = 6.3e-42
Identities = 38/149 (25%), Positives = 68/149 (45%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E+ MVNF +LG FR + I G+ +T + ++ +R+ L +
Sbjct: 1752 QNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEML 1811
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI-HSKNV-KRAISEETKQ-SK 456
+ R+ L+ LPPK V+ ++T +Q +LY +++ H V + K +K
Sbjct: 1812 AGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAK 1871
Query: 457 ILAYITALKKLCNHPKLIY-DTIKSGNPG 484
+ L ++ HP + D I N G
Sbjct: 1872 LFQDFQMLSRIWTHPWCLQLDYISKENKG 1900
Score = 53 (23.7 bits), Expect = 6.3e-42, Sum P(4) = 6.3e-42
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 508 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL---FAQLC-RER 559
T D +E SGKM +L +L + + D++++ S +LDL F +L RE+
Sbjct: 2007 TDADAEVLEHSGKMVLLFEIL-RMAEEIGDKVLVFSQSLISLDLIEDFLELASREK 2061
Score = 38 (18.4 bits), Expect = 2.0e-27, Sum P(4) = 2.0e-27
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 316 CSESCDLLICDEAH 329
C+E +L+ CD H
Sbjct: 223 CAEGGNLICCDFCH 236
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 489 (177.2 bits), Expect = 6.6e-42, Sum P(2) = 6.6e-42
Identities = 167/538 (31%), Positives = 260/538 (48%)
Query: 174 ITVDP-LLVR-FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
IT P +LV L+ +Q +G+Q+M + LN ILAD+MGLGKT+Q+I+L+
Sbjct: 525 ITEQPSILVGGTLKEYQMKGLQWMISLYNNNLNG------ILADEMGLGKTIQTISLITH 578
Query: 232 LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCE-STRDDVVSGIDSF 290
++ + + P +++ P S ++NW E +KW +++ + R I
Sbjct: 579 IIERKRNNGPF----LVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNARKQQQQNIR-- 632
Query: 291 TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQ-----TL----TNR- 340
+ QVL+ +YE + + +I DE HR+KN Q TL T+R
Sbjct: 633 ---WGNFQVLLTTYE-YIIKDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRY 688
Query: 341 ----------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIIC--GREPT-ATEEEKKL 387
N+L E +A++NF P I F ++ T G++ TEEE+ L
Sbjct: 689 RLILTGTPLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQLL 748
Query: 388 GIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRA 447
I R L + F+LRR + LP K V+ C+ + LQ++L N + + N K
Sbjct: 749 VIRR---LHKVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKL-NKQLATHN-KMV 803
Query: 448 ISEETKQSKI----LA-YITALKKLCNHPKLIYDTIKSG-NPGTTGFEDCIRFFPPEMFS 501
+S+ K K+ L+ + L+KLCNHP +++ ++ NPG G D I
Sbjct: 804 VSDG-KGGKVGMRGLSNMLMQLRKLCNHP-FVFEQVEDQVNPGR-GTNDLI--------- 851
Query: 502 GRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRY 561
W +GK +L R+L + T R+++ TQ +++ R R
Sbjct: 852 -----W--------RTAGKFELLDRILPKFKA-TGHRVLMFFQMTQIMNIMEDFLRLRGM 897
Query: 562 PYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPA 621
YLRLDG+T R L+ FN P F FLLS++AGG GLNL + +++FD DWNP
Sbjct: 898 KYLRLDGSTKSDDRSDLLKLFNAPDSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPH 957
Query: 622 NDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSSAT 678
D QA R R GQK V I R +++ ++EEK+ +R K + KVIQ + D+ +T
Sbjct: 958 QDLQAQDRAHRIGQKNEVRILRLITSNSVEEKILERAQFKLDMDGKVIQAGKFDNKST 1015
Score = 40 (19.1 bits), Expect = 6.6e-42, Sum P(2) = 6.6e-42
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 136 RTVENNVIEENFTLPPGVDP 155
+T NNV N +LP + P
Sbjct: 5 QTPPNNVAPANMSLPANLTP 24
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 284 (105.0 bits), Expect = 6.6e-42, Sum P(2) = 6.6e-42
Identities = 67/192 (34%), Positives = 104/192 (54%)
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK+ LA LL L+ R ++ + T+ LD+ Y Y+RLDG+T +RQ L
Sbjct: 1075 GKLQELAMLLRKLKFG-GHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTL 1133
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
+ FN K F+F+LS+++GG G+NL+G + ++ +D DWNPA D+QA R R GQ +
Sbjct: 1134 MQRFNTNPKI-FLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE 1192
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDV 698
V IYR +S TIEE + ++ K L ++ Q ++ F D +LF+ H +
Sbjct: 1193 VHIYRLISESTIEENILKKANQKRVLDNLVIQNGEYNT----EFFKKLDPMELFSGHKAL 1248
Query: 699 --RSEIHENMHC 708
+ E + HC
Sbjct: 1249 TTKDEKETSKHC 1260
Score = 259 (96.2 bits), Expect = 6.6e-42, Sum P(2) = 6.6e-42
Identities = 95/330 (28%), Positives = 144/330 (43%)
Query: 179 LLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFD 238
LL LR +Q G+ ++ LN ILAD+MGLGKT+ +IALL L C
Sbjct: 531 LLKHSLREYQHIGLDWLVTMYEKKLNG------ILADEMGLGKTIMTIALLAHLACD--- 581
Query: 239 GKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ 298
K + +IV PTS++ NWE E KW +++ S ++ + +S
Sbjct: 582 -KGIWGPHLIVVPTSVMLNWETEFLKWCPA-FKILTYFGSAKERKLKRQGWMK--LNSFH 637
Query: 299 VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN-------------- 339
V I +Y S F + LI DEAH +KN QTL N
Sbjct: 638 VCITTYRLVIQDSKMFK-RKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPL 696
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+NDL E +++++F P + F+ ++ C E ++K+ E L +
Sbjct: 697 QNDLMELWSLMHFLMPHVFQSHQEFKDWF-----CNPIAGMVEGQEKINKEVIDRLHNVL 751
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+LRR + LP K V+ C+L+ Q LY FI S + ++ + I +
Sbjct: 752 RPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTETQATLTSGSFFGMI-S 810
Query: 460 YITALKKLCNHPKLIYDTIKSGNPGTTGFE 489
I L+K+CNHP L G P + F+
Sbjct: 811 IIMQLRKVCNHPDLF-----EGRPIVSSFD 835
Score = 40 (19.1 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 651 EEKVYQRQMSKEGLQK-----VIQQE--QTDSSATQGNFLSTEDLRDLFTFHDDVRSE 701
EE V ++ ++E +++ ++ ++ + D A QG + ++ H D+R E
Sbjct: 1293 EEAVDNQEFTEEPVERPEDDELVNEDDIKADEPADQGLVAAGPAKEEMSLLHSDIRDE 1350
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 495 (179.3 bits), Expect = 7.0e-42, Sum P(2) = 7.0e-42
Identities = 166/583 (28%), Positives = 271/583 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L P+Q EG+ ++ C S +A ILAD+MGLGKT+QS+ LY+L+ +G P
Sbjct: 602 LHPYQLEGLNWLRHCWSNGTDA------ILADEMGLGKTVQSLTFLYSLMKEGHCKGPF- 654
Query: 244 KKAIIVTPTSLVSNWEAEIKKW---------VGGRVQLIALCESTRDDVVSGIDSF---- 290
+I P S + NWE E ++W VG R + L E V + S
Sbjct: 655 ---LIAAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKAS 711
Query: 291 ---TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL--TNRNDLEE 345
T VL+ SYET M + S E L+ DEAHRLKN+Q+L N N+
Sbjct: 712 KMKTTENMKFHVLLTSYETINMDKTILSSIE-WGALVVDEAHRLKNNQSLFFKNLNEYTI 770
Query: 346 FFAMVNFTNP--GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
+ ++ P L + + + E E + ++ +L + +
Sbjct: 771 HYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAFTAEFNEISKEDQIEKLHNLLGPHM 830
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRA-ISEETKQSKILAYIT 462
LRR A + +P K +V +L+ +Q + Y + + ++N + Q ++ +
Sbjct: 831 LRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNIL-TRNFDALNVKNGGTQMSLMNVLM 889
Query: 463 ALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMH 522
LKK CNHP L +K+ P E ++G + G A ++ SGK
Sbjct: 890 ELKKCCNHPYLF---VKAELEA-----------PKE----KNGMYEGT--ALIKNSGKFV 929
Query: 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHF 582
+L ++L L+ R+++ S T+ LD+ LC Y Y R+DG+ RQ ++ +
Sbjct: 930 LLQKMLRKLKDG-GHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRY 988
Query: 583 NDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642
N P +F+FLLS++AGG G+NL + ++++D DWNP ND QA +R R GQK +V IY
Sbjct: 989 NAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIY 1048
Query: 643 RFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFH-DDVRSE 701
RF++ ++EEK+ K L ++ + +G +S +L D+ + +++ SE
Sbjct: 1049 RFVTKKSVEEKITSVAKKKMLLNHLVVR--AGLGGKEGKTMSKTELDDVLRWGTEELFSE 1106
Query: 702 IHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIG 744
+ + A+ I D A D+S++E T G
Sbjct: 1107 DLDAAEGEGSEKKGAAAQEIVWDDAAVDALL-DRSNKEETPAG 1148
Score = 37 (18.1 bits), Expect = 7.0e-42, Sum P(2) = 7.0e-42
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 812 ESKVSPKMQATEGNKNPNNHITNPKPKLDQ 841
ES+ + +++ GN+N N + +LD+
Sbjct: 1632 ESQANIAKESSAGNRNANAVLHKTLVQLDE 1661
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 495 (179.3 bits), Expect = 7.0e-42, Sum P(2) = 7.0e-42
Identities = 166/583 (28%), Positives = 271/583 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L P+Q EG+ ++ C S +A ILAD+MGLGKT+QS+ LY+L+ +G P
Sbjct: 602 LHPYQLEGLNWLRHCWSNGTDA------ILADEMGLGKTVQSLTFLYSLMKEGHCKGPF- 654
Query: 244 KKAIIVTPTSLVSNWEAEIKKW---------VGGRVQLIALCESTRDDVVSGIDSF---- 290
+I P S + NWE E ++W VG R + L E V + S
Sbjct: 655 ---LIAAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKAS 711
Query: 291 ---TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL--TNRNDLEE 345
T VL+ SYET M + S E L+ DEAHRLKN+Q+L N N+
Sbjct: 712 KMKTTENMKFHVLLTSYETINMDKTILSSIE-WGALVVDEAHRLKNNQSLFFKNLNEYTI 770
Query: 346 FFAMVNFTNP--GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
+ ++ P L + + + E E + ++ +L + +
Sbjct: 771 HYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAFTAEFNEISKEDQIEKLHNLLGPHM 830
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRA-ISEETKQSKILAYIT 462
LRR A + +P K +V +L+ +Q + Y + + ++N + Q ++ +
Sbjct: 831 LRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNIL-TRNFDALNVKNGGTQMSLMNVLM 889
Query: 463 ALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMH 522
LKK CNHP L +K+ P E ++G + G A ++ SGK
Sbjct: 890 ELKKCCNHPYLF---VKAELEA-----------PKE----KNGMYEGT--ALIKNSGKFV 929
Query: 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHF 582
+L ++L L+ R+++ S T+ LD+ LC Y Y R+DG+ RQ ++ +
Sbjct: 930 LLQKMLRKLKDG-GHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRY 988
Query: 583 NDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642
N P +F+FLLS++AGG G+NL + ++++D DWNP ND QA +R R GQK +V IY
Sbjct: 989 NAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIY 1048
Query: 643 RFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFH-DDVRSE 701
RF++ ++EEK+ K L ++ + +G +S +L D+ + +++ SE
Sbjct: 1049 RFVTKKSVEEKITSVAKKKMLLNHLVVR--AGLGGKEGKTMSKTELDDVLRWGTEELFSE 1106
Query: 702 IHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIG 744
+ + A+ I D A D+S++E T G
Sbjct: 1107 DLDAAEGEGSEKKGAAAQEIVWDDAAVDALL-DRSNKEETPAG 1148
Score = 37 (18.1 bits), Expect = 7.0e-42, Sum P(2) = 7.0e-42
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 812 ESKVSPKMQATEGNKNPNNHITNPKPKLDQ 841
ES+ + +++ GN+N N + +LD+
Sbjct: 1632 ESQANIAKESSAGNRNANAVLHKTLVQLDE 1661
>UNIPROTKB|F1LM36 [details] [associations]
symbol:F1LM36 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 IPI:IPI00958931 Ensembl:ENSRNOT00000042751
ArrayExpress:F1LM36 Uniprot:F1LM36
Length = 2467
Score = 299 (110.3 bits), Expect = 7.6e-42, Sum P(4) = 7.6e-42
Identities = 58/142 (40%), Positives = 91/142 (64%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T+ R+K FND + +F++S+KAG G+NL+ NR+++FD
Sbjct: 2054 RNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDAS 2113
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSS 676
WNP+ D Q+ RV+R GQ K V++YRFL+ GT+E+K+Y RQ++K+ L +V+ Q+Q +
Sbjct: 2114 WNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERH 2173
Query: 677 ATQGNFLSTEDLRDLFTFHDDV 698
T +L +L+TF D+
Sbjct: 2174 FTMN------ELTELYTFEPDL 2189
Score = 179 (68.1 bits), Expect = 7.6e-42, Sum P(4) = 7.6e-42
Identities = 66/214 (30%), Positives = 101/214 (47%)
Query: 151 PGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFEC----VSGLLNAA 206
P LVL + EE + LV + + ++++ L+PHQ +GVQFM++C V +
Sbjct: 1509 PITTKLVLDEDEETKEP---LVQVHRN-MVIK-LKPHQVDGVQFMWDCCCESVKKTKKSP 1563
Query: 207 GIHGCILADDMGLGKTLQSIALLYT-LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265
G GCILA MGLGKTLQ ++ L+T LLC D A++V P + NW E +KW
Sbjct: 1564 G-SGCILAHCMGLGKTLQVVSFLHTVLLCDKLD----FSTALVVCPLNTALNWMNEFEKW 1618
Query: 266 VGG-----RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFR-------MHSSK 313
G ++++ L R S + V+I+ YE +R + S K
Sbjct: 1619 QEGLNDAEKLEVSELATVKRPQERSYMLQRWQEDGG--VMIIGYEMYRNLAQGRNVKSRK 1676
Query: 314 FS-------CSESCDLLICDEAHRLKNDQTLTNR 340
D ++CDE H LKN+ + ++
Sbjct: 1677 LKEIFNKALVDPGPDFVVCDEGHILKNEASAVSK 1710
Score = 114 (45.2 bits), Expect = 7.6e-42, Sum P(4) = 7.6e-42
Identities = 38/149 (25%), Positives = 68/149 (45%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E+ MVNF +LG FR + I G+ +T + ++ +R+ L +
Sbjct: 1729 QNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEML 1788
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI-H-SKNVKRAISEETKQ-SK 456
+ R+ L+ LPPK V+ ++T +Q +LY +++ H + N K +K
Sbjct: 1789 AGCVQRKDYTALTKFLPPKHEYVLAVRMTAIQCKLYQYYLDHLTGNNNSTDGGRGKAGAK 1848
Query: 457 ILAYITALKKLCNHPKLIY-DTIKSGNPG 484
+ L ++ HP + D I N G
Sbjct: 1849 LFQDFQMLSRIWTHPWCLQLDYISKENKG 1877
Score = 53 (23.7 bits), Expect = 7.6e-42, Sum P(4) = 7.6e-42
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 508 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL---FAQLC-RER 559
T D +E SGKM +L +L + + D++++ S +LDL F +L RE+
Sbjct: 1982 TDADAEVLEHSGKMVLLFEIL-RMAEEIGDKVLVFSQSLISLDLIEDFLELASREK 2036
Score = 44 (20.5 bits), Expect = 4.3e-21, Sum P(3) = 4.3e-21
Identities = 23/105 (21%), Positives = 48/105 (45%)
Query: 371 SIICGREPTATEEEKKLGI--ERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLT 428
S+ E + +KK+ + E++S++ + ++F ++ N+ N K+ E +T
Sbjct: 281 SVFENLEQLLQQNKKKIKVDSEKTSKVCDQTSKFSPKK-NSSSCNGEEKKLEESGSSSVT 339
Query: 429 PLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKL 473
S L K K+ I ET + +YI LK+ ++ ++
Sbjct: 340 STSSALIVPKELIKKTKKLI--ETTSNMNSSYIKFLKQAADNSEM 382
Score = 38 (18.4 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 374 CGREPTATEEEKKLGIERSSE 394
C P K G+ RSSE
Sbjct: 592 CQEAPQEKNARKSSGVARSSE 612
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 310 (114.2 bits), Expect = 9.0e-42, Sum P(3) = 9.0e-42
Identities = 72/177 (40%), Positives = 99/177 (55%)
Query: 497 PEMFSGRSGS--WTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQ 554
P +F G +T GD V +GKM +L +LL L+ R D R+++ S T+ LD+
Sbjct: 472 PYLFQGAEPGPPYTTGDHL-VTNAGKMVLLDKLLPKLKDR-DSRVLIFSQMTRLLDILED 529
Query: 555 LCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLF 614
R Y Y R+DG T +R + +N P +FVFLLS++AGG G+NL + ++L+
Sbjct: 530 YLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILY 589
Query: 615 DPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK-VIQQ 670
D DWNP D QA R R GQKK V ++RF + IE KV +R K L VIQQ
Sbjct: 590 DSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQ 646
Score = 233 (87.1 bits), Expect = 9.0e-42, Sum P(3) = 9.0e-42
Identities = 98/331 (29%), Positives = 162/331 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L GI+G ILAD+MGLGKTLQ+I+LL Y +G +G M
Sbjct: 194 LRDYQLAGLNWLIR-----LYENGING-ILADEMGLGKTLQTISLLAYLHEYRGINGPHM 247
Query: 243 VKKAIIVTPTSLVSNWEAEIKKW--VGGRVQLIALCESTR----DDVVSGIDSFTDPC-S 295
V V P S + NW EI+++ V V+ + E R + +V+G F D C +
Sbjct: 248 V-----VAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAG--KF-DICVT 299
Query: 296 SLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL---------TN------- 339
S ++ I T R S ++ +I DEAHR+KN+ +L TN
Sbjct: 300 SFEMAIKEKTTLRRFSWRY--------IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITG 351
Query: 340 ---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELS 396
+N+L E +A++NF P + A F +++ S G E +++ E +L
Sbjct: 352 TPLQNNLHELWALLNFLLPEVFSSAETFDEWFQIS---G------ENDQQ---EVVQQLH 399
Query: 397 AKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK 456
+ F+LRR + + LPPK ++ ++ +Q + Y + K+++ ++ ++ +
Sbjct: 400 KVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQ-KDLE-VVNGGGERKR 457
Query: 457 ILAYITALKKLCNHPKLIYDTIKSGNPGTTG 487
+L L+K CNHP L + + G P TTG
Sbjct: 458 LLNIAMQLRKCCNHPYL-FQGAEPGPPYTTG 487
Score = 38 (18.4 bits), Expect = 9.0e-42, Sum P(3) = 9.0e-42
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 686 EDLRDLFTFHDDVRSEIHENMHCTRCQNYDD 716
+D D + F DD + E + +N++D
Sbjct: 715 DDSADFYDFDDDNKDESKVDFKKIVSENWND 745
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 506 (183.2 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 162/528 (30%), Positives = 253/528 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N + CILAD+MGLGKT+QSI LY + +G G P
Sbjct: 968 LREYQLEGVNWL------LFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHG-PF- 1019
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + F DP +V+ S
Sbjct: 1020 ---LVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG--RVIKGS 1074
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKND--QTLTNRN--DLEEFFAM 349
Y+ TF M + C E ++ ++ DEAHRLKN + L DLE +
Sbjct: 1075 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 1132
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERS-SELSAKVNQFILRRTN 408
+ + + E S E T +E L E +L A + +LRR
Sbjct: 1133 TGTPLQNTVEELFSLLHFLEPSRFPS-ETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK 1191
Query: 409 ALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI---LAYITALK 465
+ +L PK ++ +LT +Q + Y + KN +S+ Q+ + L + L+
Sbjct: 1192 EDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFT-FLSKGGGQANVPNLLNTMMELR 1249
Query: 466 KLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLA 525
K CNHP LI G E+ I E + S + A ++ +GK+ ++
Sbjct: 1250 KCCNHPYLI-----------NGAEEKILEEFKETHNAESPDFQLQ--AMIQAAGKLVLID 1296
Query: 526 RLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDP 585
+LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++ F+ P
Sbjct: 1297 KLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKP 1355
Query: 586 SKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFL 645
+ FVFLL ++AGG G+NL + ++FD DWNP ND QA AR R GQ K V IYR +
Sbjct: 1356 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLI 1415
Query: 646 STGTIEEKVYQRQMSKEGLQKVIQQEQTD-SSATQG-NFLSTEDLRDL 691
+ + E +++ + K GL K + Q + +AT G LS +++ DL
Sbjct: 1416 TRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1463
Score = 41 (19.5 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 709 TRCQNYDDGAESIGEGDETNSANKNDQSDQE 739
T + + +S +G+E + N+++ D E
Sbjct: 2828 TTASSQGEPEDSTSKGEEKGNENEDENKDSE 2858
Score = 37 (18.1 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 745 GFAGLAGCLHKLKSSEKQLGTPLE 768
GF LAG + + SSE++ E
Sbjct: 2920 GFPALAGLQNAVGSSEEKAADKAE 2943
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 306 (112.8 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 71/164 (43%), Positives = 96/164 (58%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK L +L L+Q+ DR+VL S +T LD+ L + ++ YLRLDG T IS+R
Sbjct: 851 SGKFRTLGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 909
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L++ FN + FVFLLS+KAGG G+NL N ++L D D NP NDKQA R R GQ K
Sbjct: 910 LIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 968
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGN 681
V + + +S GTIEE + + K L+ Q T A +G+
Sbjct: 969 EVLVIKLISQGTIEESMLKINQQKLKLE---QDMTTVDEADEGS 1009
Score = 226 (84.6 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 86/313 (27%), Positives = 144/313 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q+ G+ ++ L++ G++G ILAD+MGLGKT+Q+IA L L +G G P
Sbjct: 495 LKPYQKVGLNWL-----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLFQEGNKG-PH- 546
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGID-SFTDPCSSLQVLIV 302
+IV P S + NW E+ W L LC + I + + V++
Sbjct: 547 ---LIVVPASTIDNWLREVNLWCP---TLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVT 600
Query: 303 SYETFRMHSSKFSCSESCDL--LICDEAHRLKN------DQTLT----NR---------N 341
+Y S S L I DE H LKN +T NR N
Sbjct: 601 TYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQN 660
Query: 342 DLEEFFAMVNFTNPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVN 400
+L E +++NF P + + + RR + + E + E+E+ I + ++ +
Sbjct: 661 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKER---IAHAKQI---IK 714
Query: 401 QFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAY 460
FILRR + LPPK ++ C ++ Q +LY+ + +K++I+ K +++
Sbjct: 715 PFILRRVKEEVLKLLPPKKDQIELCAMSEKQEQLYSGLFN--RLKKSINNLEKNTEMCNV 772
Query: 461 ITALKKLCNHPKL 473
+ L+K+ NHP L
Sbjct: 773 MMQLRKMANHPLL 785
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 304 (112.1 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 68/148 (45%), Positives = 92/148 (62%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK VL +L L+Q+ DR+VL S +T LD+ L + ++ YLRLDG T IS+R
Sbjct: 855 SGKFRVLGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 913
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L++ FN + FVFLLS+KAGG G+NL N ++L D D NP NDKQA R R GQ K
Sbjct: 914 LIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972
Query: 638 RVFIYRFLSTGTIEE---KVYQRQMSKE 662
V + + + GTIEE K+ Q+++ E
Sbjct: 973 EVLVIKLIGQGTIEESMLKINQQKLKLE 1000
Score = 228 (85.3 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 88/316 (27%), Positives = 145/316 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q+ G+ ++ L++ G++G ILAD+MGLGKT+Q+IA L L +G G P
Sbjct: 499 LKPYQKVGLNWL-----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKG-PH- 550
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC----ESTRDDVVSGIDSFTDPCSSLQV 299
+IV P S + NW E+ W L LC + R + I S + V
Sbjct: 551 ---LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSRYE---EYNV 601
Query: 300 LIVSYETFRMHSSKFSCSESCDL--LICDEAHRLKN------DQTLT----NR------- 340
++ +Y S S L I DE H LKN +T NR
Sbjct: 602 IVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTP 661
Query: 341 --NDLEEFFAMVNFTNPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
N+L E +++NF P + + + RR + + E + E+E+ I + ++
Sbjct: 662 VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKER---IAHAKQI-- 716
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ FILRR + LPPK + C ++ Q +LY + + +K++I+ K +++
Sbjct: 717 -IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYMNLFN--RLKKSINNMEKNTEM 773
Query: 458 LAYITALKKLCNHPKL 473
+ L+K+ NHP L
Sbjct: 774 CNVMMQLRKMANHPLL 789
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 296 (109.3 bits), Expect = 1.2e-41, Sum P(3) = 1.2e-41
Identities = 69/170 (40%), Positives = 94/170 (55%)
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK+ LA LL L+ R ++ + T+ LD+ Q Y Y+RLDG T I RQ L
Sbjct: 1246 GKLQKLAILLQQLKDN-GHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQIL 1304
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
FN S+ VF+LSS++GG G+NL G + ++ +D DWNPA DKQ R R GQ +
Sbjct: 1305 TERFNTDSRIT-VFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRD 1363
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDL 688
V IYRF+S TIE + ++ K L V+ QE D + + LS DL
Sbjct: 1364 VHIYRFVSEHTIESNILKKANQKRQLDNVVIQEG-DFTTDYFSKLSVRDL 1412
Score = 174 (66.3 bits), Expect = 1.2e-41, Sum P(3) = 1.2e-41
Identities = 54/170 (31%), Positives = 85/170 (50%)
Query: 165 QNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQ 224
Q + ++V + V LL LR +Q++G+ ++ + N ILAD+MGLGKT+Q
Sbjct: 677 QEEQLSVVDVPVPSLLRGNLRTYQKQGLNWLASLYNNHTNG------ILADEMGLGKTIQ 730
Query: 225 SIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRDDV 283
+I+LL L C+ + P +IV PTS++ NWE E K++ G +V R +
Sbjct: 731 TISLLAYLACEKENWGPH----LIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEK 786
Query: 284 VSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
G + P + V IVSY+ F + ++ DEAH +KN
Sbjct: 787 RKG---WNKP-DAFHVCIVSYQLVVQDQHSFK-RKRWQYMVLDEAHNIKN 831
Score = 117 (46.2 bits), Expect = 1.2e-41, Sum P(3) = 1.2e-41
Identities = 37/143 (25%), Positives = 68/143 (47%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSII---CGRE-PTATEEEKKLGIERSSEL 395
+N+L E ++++ F P + D + + GR E + G ++ ++
Sbjct: 857 QNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKK 916
Query: 396 S-AKVNQ----FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISE 450
+ AK++Q ++LRR A + +P K +V CKL+ Q LY+ F+ K ++
Sbjct: 917 TVAKLHQVLRPYLLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTKATLAS 976
Query: 451 ETKQSKILAYITALKKLCNHPKL 473
S I+ + L+K+CNHP L
Sbjct: 977 GNFMS-IVNCLMQLRKVCNHPNL 998
Score = 44 (20.5 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
Identities = 35/159 (22%), Positives = 68/159 (42%)
Query: 331 LKNDQTLTNRND-LEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGI 389
L++D TL N ++E +++ GI A + + ET + +P ++E K +
Sbjct: 279 LEDDLTLEEYNKYIDEQRRLLSRLKKGIENGALKYDK--ETDSL---QPITSKEIKTIIT 333
Query: 390 ERSSELSAKVNQFILR-RTNALLSN--HLPPKIIEVVCCKLTPLQ--SELYN-HFIHSKN 443
+ +S Q L+ T+ L++ H+ ++ + S++ HF H
Sbjct: 334 YKPDPISYFYKQQDLQIHTDHLINQGIHMSKLFRSSTKARIARAKKVSQMIEQHFKHVAG 393
Query: 444 VK-RAISEETKQSKILAY--ITALKKLCNHPKLIYDTIK 479
+ R EE + K LA + A+KK N + Y ++
Sbjct: 394 AEERKAKEEERHKKSLARFAVQAVKKRWNMAEKAYRILR 432
Score = 37 (18.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 305 ETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVN 351
ET + +F + + ++ + N Q L D+ F MVN
Sbjct: 1080 ETNKQLQEEFGEASFLNFQDANQYFKYSNKQKLEGTVDMLNFLKMVN 1126
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 476 (172.6 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 142/478 (29%), Positives = 220/478 (46%)
Query: 247 IIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYET 306
IIV PT+++ W E W +A+ T D +LI SY
Sbjct: 561 IIVCPTTVMHQWVKEFHTW--WPAFRVAVLHETGSFTHKKEKLVRDIARCHGILITSYSY 618
Query: 307 FRMHSSKFSCSESCDLLICDEAHRLKNDQ---TLTNR----------------NDLEEFF 347
R+ S +I DE H+++N TL + N+L E +
Sbjct: 619 IRLMQDDIS-RHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELW 677
Query: 348 AMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRT 407
++ +F PG LG F + I G A+ + K + + L +N ++LRR
Sbjct: 678 SLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRM 737
Query: 408 NALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKL 467
+ + L L E + + + + K + +I + + AL+K+
Sbjct: 738 KSDVKMSLSLPDKNEQVL-FCRLTDEQHKVYQNFIDSKEVYRILNGEMQIFSGLVALRKI 796
Query: 468 CNHPKLIYDTIKSGNP-GTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLAR 526
CNHP L SG P G D E+ + G W + SGKM V+
Sbjct: 797 CNHPDLF-----SGGPKNLKGIPD------EELGEDQFGYW--------KRSGKMIVVES 837
Query: 527 LLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPS 586
LL + + R++L S Q LD+ R ++Y YL++DGTT+I+ RQ L+ +N+ +
Sbjct: 838 LL-KIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNEDT 896
Query: 587 KNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLS 646
+ FVFLL+++ GG G+NL G NR++++DPDWNP+ D QA R WR GQKK+V +YR L+
Sbjct: 897 -SIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLT 955
Query: 647 TGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHE 704
GTIEEK+Y RQ+ K+ L + ++ Q F + DL +LFT S+ E
Sbjct: 956 AGTIEEKIYHRQIFKQFLTNRVLKDPK-----QRRFFKSNDLYELFTLSSPDTSQSTE 1008
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 306 (112.8 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 71/164 (43%), Positives = 96/164 (58%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK L +L L+Q+ DR+VL S +T LD+ L + ++ YLRLDG T IS+R
Sbjct: 848 SGKFRALGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 906
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L++ FN + FVFLLS+KAGG G+NL N ++L D D NP NDKQA R R GQ K
Sbjct: 907 LIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 965
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGN 681
V + + +S GTIEE + + K L+ Q T A +G+
Sbjct: 966 EVLVIKLISQGTIEESMLKINQQKLKLE---QDMTTVDEADEGS 1006
Score = 225 (84.3 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 86/313 (27%), Positives = 143/313 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q+ G+ ++ L++ G++G ILAD+MGLGKT+Q+IA L L +G G P
Sbjct: 492 LKPYQKVGLNWL-----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLFQEGNKG-PH- 543
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGID-SFTDPCSSLQVLIV 302
+IV P S + NW E+ W L LC + I + + V++
Sbjct: 544 ---LIVVPASTIDNWLREVNLWCPS---LNVLCYYGSQEERKQIRFNIHNKYEDYNVIVT 597
Query: 303 SYETFRMHSSKFSCSESCDL--LICDEAHRLKN------DQTLT----NR---------N 341
+Y S S L I DE H LKN +T NR N
Sbjct: 598 TYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQN 657
Query: 342 DLEEFFAMVNFTNPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVN 400
+L E +++NF P + + + RR + + E + E+E+ I + ++ +
Sbjct: 658 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKER---IAHAKQI---IK 711
Query: 401 QFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAY 460
FILRR + LPPK + C ++ Q +LY+ + +K++I+ K +++
Sbjct: 712 PFILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFN--RLKKSINNLEKNTEMCNV 769
Query: 461 ITALKKLCNHPKL 473
+ L+K+ NHP L
Sbjct: 770 MMQLRKMANHPLL 782
Score = 39 (18.8 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 244 KKAIIVTPTSLVSNWEAEIKKW--VGGRVQ-LIALCEST---RDDVVSGIDSFTDPCSSL 297
KKA +T +NWEA K + G + LI C++ RD V+ ++ D + L
Sbjct: 405 KKAQKITELRPFNNWEALFTKMSKINGLSEDLIWNCKTVIQERDVVIRLMNKCEDISNKL 464
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 323 (118.8 bits), Expect = 1.7e-41, Sum P(3) = 1.7e-41
Identities = 68/168 (40%), Positives = 102/168 (60%)
Query: 513 AWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSI 572
A + SGKM +L +LL L+ R R+++ S + LD+ R Y Y RLDGT
Sbjct: 750 ALITSSGKMMLLDQLLAKLK-RDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTIPS 808
Query: 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWR 632
+ R+ + H+N P ++F F+LS++AGG G+NL+ + ++LFD DWNP D QA AR R
Sbjct: 809 ASRRLAIEHYNAPDSSDFAFILSTRAGGLGINLMTADTVILFDSDWNPQADLQAMARAHR 868
Query: 633 DGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKV-IQQEQTDSSATQ 679
GQ K V +YR +S T+EE+V +R +K L+ + IQ+ TD A++
Sbjct: 869 IGQTKPVSVYRLVSKDTVEEEVIERARNKLLLEFITIQRGVTDKEASE 916
Score = 222 (83.2 bits), Expect = 1.7e-41, Sum P(3) = 1.7e-41
Identities = 88/321 (27%), Positives = 143/321 (44%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ Q +GV FM N +LAD+MGLGKT+Q++A + L P V
Sbjct: 446 LKEFQVKGVNFM------AFNWVKNRNVVLADEMGLGKTVQTVAFISWLRHVRRQQGPFV 499
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTD--PCS-SLQVL 300
+V P S + +W W ++ +V+ + D P VL
Sbjct: 500 ----VVVPLSTMPSWAETFDNWSPDLNYVVYNGNEASRNVLKEYELMVDGNPRRPKFNVL 555
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKN-DQTLTNRNDLEEFF--AMVNFTNPGI 357
+ +YE + SS F + + DEAHRLKN D L + L+EF A + T I
Sbjct: 556 LTTYEYVLVDSS-FLSQFNWQFMAVDEAHRLKNRDSQLYIK--LQEFNSPARLLITGTPI 612
Query: 358 ---LGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNH 414
L + + + ++ + + E+ +EL+ ++ F+LRRT + +
Sbjct: 613 QNNLAELSALLDFLNPGLV--NVDADMDLNSEAASEKLAELTKAISPFMLRRTKTKVESD 670
Query: 415 LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPK 472
LPPK +++ +L+ +Q E Y + + +KN A++E TK K +L + LKK NHP
Sbjct: 671 LPPKTEKIIRVELSDVQLEYYKNIL-TKNYA-ALNEGTKGQKQSLLNIMMELKKASNHPF 728
Query: 473 LIYDTIKSGNPGTTGFEDCIR 493
+ G+T ED +R
Sbjct: 729 MFPSAETKILEGSTRREDVLR 749
Score = 43 (20.2 bits), Expect = 7.8e-24, Sum P(2) = 7.8e-24
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 199 VSGLLNAAGIHGCILADDMG 218
VS + +AAG+H + A+D G
Sbjct: 21 VSPVTDAAGLHNELAANDHG 40
Score = 39 (18.8 bits), Expect = 1.7e-41, Sum P(3) = 1.7e-41
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 70 QSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLARRLCARKRFVP--WGSSRPVLVT 127
+S P V E RKPF+P N QL F+ W +R V+
Sbjct: 411 RSSRPPVSDKKESHPSSRKPFEPIKGTPSFLHNGQLKEFQVKGVNFMAFNWVKNRNVV-- 468
Query: 128 ITNRLDLPRTVE 139
+ + + L +TV+
Sbjct: 469 LADEMGLGKTVQ 480
>UNIPROTKB|G5E5P9 [details] [associations]
symbol:LOC789977 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:DAAA02024017
EMBL:DAAA02024018 EMBL:DAAA02024019 EMBL:DAAA02024020
EMBL:DAAA02024021 EMBL:DAAA02024022 Ensembl:ENSBTAT00000027486
Uniprot:G5E5P9
Length = 908
Score = 343 (125.8 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 84/220 (38%), Positives = 123/220 (55%)
Query: 451 ETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP--PEMFSGRSGSWT 508
ET ++ +Y+ L+K+ NH L+ S T C + F P+ F +S
Sbjct: 376 ETVKTLYFSYLAVLQKVANHVALLQTASTSRQQETLIKRICDQVFSRFPD-FVQKSKDAA 434
Query: 509 GGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDG 568
+ + SGKM VL +LL H R + D+++L S T+ LD+ Q C Y RLDG
Sbjct: 435 FETLSDPKYSGKMKVLQQLLNHCR-KNKDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDG 493
Query: 569 TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA 628
+T +R K+V FN +++ + L+S+ AGG GLN +G N +VLFDP WNPAND QA
Sbjct: 494 STKSEERIKIVKEFNS-TQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAID 552
Query: 629 RVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
R +R GQ + V + R +S GT+EE +Y RQ+ K+ L V+
Sbjct: 553 RAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVV 592
Score = 183 (69.5 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 54/215 (25%), Positives = 107/215 (49%)
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRV----------QLIALCESTRDDVVSGIDSFT-- 291
K +IV P S++ NW+ E+ W RV +LI + + + ++ ++
Sbjct: 135 KMFLIVAPLSVLYNWKDELDTWGYFRVTILHGNKKDSELIRVKQRKCEIALTTYETLRLC 194
Query: 292 -DPCSSLQ-VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAM 349
D +SL+ ++ E R+ + K +E L C+ R+ T+ +N+++E + +
Sbjct: 195 LDELNSLEWSAVIVDEAHRIKNPKARVTEIMKALRCNV--RIGLTGTIL-QNNMKELWCV 251
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNA 409
+++ PG+LG +F++ + + G+ TAT+ E G + L+ K++ + LRRT
Sbjct: 252 MDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMQRLARKMSGWFLRRTKT 311
Query: 410 LLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV 444
L+ + LP K +V C LT Q +Y + +++V
Sbjct: 312 LIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 346
Score = 130 (50.8 bits), Expect = 7.3e-36, Sum P(2) = 7.3e-36
Identities = 54/187 (28%), Positives = 90/187 (48%)
Query: 166 NDGGNLVPITVDPLLVRFLRPHQREGVQFMF-ECVSGLLNAAGIHGCILADDMGLGKTLQ 224
++ G+ +P T++ R+LR +QREG QF++ + G GCIL DDMGLGKT+Q
Sbjct: 47 SENGDSIPYTIN----RYLRDYQREGAQFLYGHFIQG-------RGCILGDDMGLGKTVQ 95
Query: 225 SIALLYTLLCQGFDGKPMVKKAIIVT-PTSLVSNWEAEIKKWVGGRVQLIA---LCESTR 280
I+ L +L GK ++ I P L+ N + + ++A + + +
Sbjct: 96 VISFLAAVL-----GKKGTREDIENNMPEFLLRNMKKDPPSTAKKMFLIVAPLSVLYNWK 150
Query: 281 DDVVS-GIDSFT-----DPCSSL--------QVLIVSYETFRMHSSKFSCSESCDLLICD 326
D++ + G T S L ++ + +YET R+ + + E +I D
Sbjct: 151 DELDTWGYFRVTILHGNKKDSELIRVKQRKCEIALTTYETLRLCLDELNSLE-WSAVIVD 209
Query: 327 EAHRLKN 333
EAHR+KN
Sbjct: 210 EAHRIKN 216
Score = 41 (19.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 634 GQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE---QTDSSATQGNFLSTEDLRD 690
GQK+R Y+ S G + +Y ++ LQKV QT S++ Q L
Sbjct: 361 GQKRRNCCYKTNSQGETVKTLYFSYLAV--LQKVANHVALLQTASTSRQQETLIKRICDQ 418
Query: 691 LFT-FHDDVR 699
+F+ F D V+
Sbjct: 419 VFSRFPDFVQ 428
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 344 (126.2 bits), Expect = 2.1e-41, Sum P(2) = 2.1e-41
Identities = 86/234 (36%), Positives = 125/234 (53%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGKM +L +LL LR+ R+++ S + LD+ + Y + RLDGT SKR+
Sbjct: 673 SGKMVLLEQLLSRLRKE-GHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSKRKI 731
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
++HFN P +F FLLS++AGG G+NL+ + +++FD DWNP D QA AR R GQK
Sbjct: 732 AIDHFNAPGSKDFAFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKN 791
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSSATQGNFL--STEDLRDLFTF 694
V +YRF+S T+EE++ +R K L+ +I TD SA G+ ST +L + F
Sbjct: 792 HVSVYRFVSKDTVEEQILERARKKMVLEYAIISLGITDPSAKNGSKTEPSTNELSQILKF 851
Query: 695 HDDVRSEIHENMHCTRCQNYDD---GAE---SIGEGDETNSANKNDQSDQEVTD 742
+ + N N DD AE + E E+N ++ EVTD
Sbjct: 852 GAGTMFKENNNQQKLENLNLDDVLSHAEDHVTTPELGESNLGSEEFLKQFEVTD 905
Score = 188 (71.2 bits), Expect = 2.1e-41, Sum P(2) = 2.1e-41
Identities = 82/299 (27%), Positives = 133/299 (44%)
Query: 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQ 271
ILAD+MGLGKT+Q++A L L+ P ++V P S V W+ +KW
Sbjct: 384 ILADEMGLGKTVQTVAFLSWLIYARRQNGPH----LVVVPLSTVPAWQETFEKWAPDVNC 439
Query: 272 LIALCESTRDDVVSGIDSFTDPCS-SLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHR 330
+ L + + + VL+ +YE ++ + L DEAHR
Sbjct: 440 VYYLGNGEARKTIREYELYNQNRKPKFNVLLTTYEYILKDKNELGAFK-WQFLAVDEAHR 498
Query: 331 LKNDQT----------LTNR---------NDLEEFFAMVNFTNPGILGDAAYFRRYYETS 371
LKN ++ ++NR N+++E A+ NF PG F E
Sbjct: 499 LKNAESSLYEALKGFKVSNRLLITGTPLQNNVKELAALCNFLMPG------KFTIDQEID 552
Query: 372 IICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQ 431
E +E+E+ + +L K++ FILRR + LP K ++ +L+ +Q
Sbjct: 553 F----ETIDSEQEQYI-----KDLQKKISPFILRRLKKDVEKSLPSKSERILRVELSDIQ 603
Query: 432 SELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLI---YDTI--KSGNP 483
+E Y + I +KN A++ + S+I L ++ LKK NHP L D + K+G+P
Sbjct: 604 TEYYKNII-TKNYA-ALNAGNRGSQISLLNIMSELKKASNHPYLFDGAEDKVLDKAGSP 660
Score = 42 (19.8 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 646 STGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQ--GNFLSTEDLRDL 691
+TG + V K QK + Q+++ +SA+ G+ E+ RDL
Sbjct: 1267 NTGKHRKPVKLESSEKLAKQKRMNQQRSSASASPALGHAKFKEEKRDL 1314
>UNIPROTKB|F1S4L1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:CU855584
Ensembl:ENSSSCT00000011974 Uniprot:F1S4L1
Length = 928
Score = 340 (124.7 bits), Expect = 2.2e-41, Sum P(3) = 2.2e-41
Identities = 86/235 (36%), Positives = 128/235 (54%)
Query: 451 ETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP--PEMFSGRSGSWT 508
E+ ++ +Y+ L+K+ NH L+ S T C + F P+ F +S
Sbjct: 373 ESVKTLYFSYLAVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPD-FVQKSKDAA 431
Query: 509 GGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDG 568
+ + SGKM VL +LL H R + D+++L S T+ LD+ Q C Y RLDG
Sbjct: 432 FETLSDPKYSGKMKVLQQLLNHCR-KNKDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDG 490
Query: 569 TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA 628
+T +R K+V FN +++ + L+S+ AGG GLN +G N +VLFDP WNPAND QA
Sbjct: 491 STKSEERIKIVKEFNS-TQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAID 549
Query: 629 RVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDS--SATQGN 681
R +R GQ + V + R +S GT+EE +Y RQ+ K+ L V+ + A QG+
Sbjct: 550 RAYRIGQCRDVKVLRLISLGTVEEIMYLRQLYKQQLHCVVVGSENAKRYEAVQGS 604
Score = 191 (72.3 bits), Expect = 2.2e-41, Sum P(3) = 2.2e-41
Identities = 56/221 (25%), Positives = 110/221 (49%)
Query: 238 DGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRV----------QLIALCESTRDDVVSGI 287
DG+ K +IV P S++ NW E+ W RV +LI + + + ++
Sbjct: 126 DGRREKKLFLIVAPLSVLYNWRDELDTWGYFRVTILHGNKKDNELIRVKQRKCEIALTTY 185
Query: 288 DSFT---DPCSSLQ-VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDL 343
++ D +SL+ ++ E R+ + K +E L C+ R+ T+ +N++
Sbjct: 186 ETLRLCLDELNSLEWSAVIVDEAHRIKNPKARITEVMKALKCNV--RIGLTGTIL-QNNM 242
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
+E + ++++ PG+LG +F++++ + G+ TAT+ E G + L+ K++ +
Sbjct: 243 KELWCVMDWAVPGLLGSEIHFKKHFSDPVEHGQRHTATKRELATGRKAMQRLAIKMSGWF 302
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV 444
LRRT L+ + LP K +V C LT Q +Y + +++V
Sbjct: 303 LRRTKILIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 343
Score = 133 (51.9 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 63/221 (28%), Positives = 104/221 (47%)
Query: 131 RLDLPRTVENNVIEENFTLPPGVDP--LVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQ 188
++ L R E+ +E+ + P P V +Q E DG + +P T++ R+LR +Q
Sbjct: 15 KVPLKRLQEDEDLEKPY-FPDREFPSSAVAFQLSE---DGAS-IPYTIN----RYLRDYQ 65
Query: 189 REGVQFMF-ECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAI 247
REG QF++ + G GCIL DDMGLGKT+Q I+ L +L GK ++ I
Sbjct: 66 REGAQFLYGHFIQG-------RGCILGDDMGLGKTVQVISFLAAVL-----GKKGTREDI 113
Query: 248 IVT-PTSLVSNWEAEIKKWVGGRVQLIALCESTRDD----------VVSGIDSFTDPCSS 296
P L+ + +K + V +++ + RD+ ++ G +
Sbjct: 114 ENNMPEFLLRTKDGRREKKLFLIVAPLSVLYNWRDELDTWGYFRVTILHGNKKDNELIRV 173
Query: 297 LQ----VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
Q + + +YET R+ + + E +I DEAHR+KN
Sbjct: 174 KQRKCEIALTTYETLRLCLDELNSLE-WSAVIVDEAHRIKN 213
Score = 42 (19.8 bits), Expect = 6.4e-26, Sum P(3) = 6.4e-26
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 55 KNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKP-PCSNGYDNGN 102
K D +V +L ++++ VL TE ++ + +P PCS+G N
Sbjct: 316 KKEDRMVYCSLTDFQKAVYQTVLE-TEDVSLILQSSEPCPCSSGQKRRN 363
Score = 41 (19.5 bits), Expect = 2.2e-41, Sum P(3) = 2.2e-41
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 723 EGDETNSANKNDQSDQEVTDIGGFAGLAGC 752
E + ++A+ ++ SD++ T + A AGC
Sbjct: 739 EDSDGDTASDDESSDEQPTCLSTEAKDAGC 768
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 474 (171.9 bits), Expect = 2.4e-41, P = 2.4e-41
Identities = 163/527 (30%), Positives = 241/527 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 731 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRLN 780
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R +V + S VL+
Sbjct: 781 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS-----GKFNVLLT 835
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 836 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 894
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 895 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRP 951
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + SE+ K+ K
Sbjct: 952 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGK---- 1006
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
K L N I K N F+ F + G S G + SGK
Sbjct: 1007 -GGAKTLMN---TIMQLRKICNHPYM-FQHIEESFAEHL--GYSNGVINGAELY-RASGK 1058
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L R+L LR T+ R++L T + + R + YLRLDGTT R L+
Sbjct: 1059 FELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLK 1117
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN+P F+FLLS++AGG GLNL + +V+FD DWNP D QA R R GQ+ V
Sbjct: 1118 KFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1177
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
+ R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1178 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1224
>UNIPROTKB|B5MDQ0 [details] [associations]
symbol:ERCC6L "FLJ20105 protein, isoform CRA_a"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135749 EMBL:CH471213
HOGENOM:HOG000074172 HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD
UniGene:Hs.47558 HGNC:HGNC:20794 IPI:IPI00873388 SMR:B5MDQ0
IntAct:B5MDQ0 STRING:B5MDQ0 Ensembl:ENST00000373657 Uniprot:B5MDQ0
Length = 1127
Score = 406 (148.0 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41
Identities = 104/278 (37%), Positives = 154/278 (55%)
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSG 481
++ +L PLQ E+Y F+ ++K + E T+ LA + LKKLC+HP+L+
Sbjct: 245 IIWIRLVPLQEEIYRKFVSLDHIKELLME-TRSP--LAELGVLKKLCDHPRLLSARACCL 301
Query: 482 -NPGTTGFEDCIRFFP-PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
N GT +D P++ T D +E SGKM L LL LR +
Sbjct: 302 LNLGTFSAQDGNEGEDSPDV--DHIDQVT--DDTLMEESGKMIFLMDLLKRLRDEGHQTL 357
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLSSKA 598
V S Q L++ +L + R + LR+DGT T + +R+K +N F +K+ VFLL+++
Sbjct: 358 VF-SQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQ-NKDYSVFLLTTQV 415
Query: 599 GGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQ 658
GG GL L R+V+FDP WNPA D QA RV+R GQK+ V +YR ++ GT+EEK+Y+RQ
Sbjct: 416 GGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQ 475
Query: 659 MSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHD 696
+ K+ L I+Q T + S ++LR+LFT D
Sbjct: 476 VFKDSL---IRQT-TGEKKNPFRYFSKQELRELFTIED 509
Score = 119 (46.9 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41
Identities = 36/102 (35%), Positives = 50/102 (49%)
Query: 310 HSSKFSCSESCDLLICDEAHRLKNDQTLTN---RNDLEEFFAMVNFTNPG-ILGDAAYFR 365
H K S ++S IC A N LT +N+L+E +++ +F G +LG F+
Sbjct: 108 HKIKTSSTKSA---ICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFK 164
Query: 366 RYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRT 407
YE I RE AT EK LG + S L A + + LRRT
Sbjct: 165 MEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRT 206
Score = 116 (45.9 bits), Expect = 5.4e-41, Sum P(2) = 5.4e-41
Identities = 36/124 (29%), Positives = 59/124 (47%)
Query: 217 MGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC 276
MGLGKT+Q IA L + FD +V +++ PT+L++ W E KW G +++
Sbjct: 1 MGLGKTVQIIAFLSGM----FDAS-LVNHVLLIMPTNLINTWVKEFIKWTPG-MRVKTFH 54
Query: 277 ESTRDDVVSGIDSFTDPCSSLQVLIVSYETFR---MHSSKFSCSESC-DLLICDEAHRLK 332
++D+ ++ V+I +Y+ S F E D +I DEAH++K
Sbjct: 55 GPSKDERTRNLNRIQQRNG---VIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIK 111
Query: 333 NDQT 336
T
Sbjct: 112 TSST 115
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 273 (101.2 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 65/187 (34%), Positives = 99/187 (52%)
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK+ + RLL L+ R+++ + T+ LD+ + YLRLDG+T + +RQ L
Sbjct: 1658 GKLQTMDRLLRQLKVN-GHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQIL 1716
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
+ FN K F F+LS+++GG G+NL G + ++ +D DWNP D QA R R GQ +
Sbjct: 1717 MERFNG-DKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRD 1775
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLST----EDLRDLFTF 694
V IYR +S TIE + ++ K L +D + GNF +T ++DLFT
Sbjct: 1776 VHIYRLVSERTIEVNILKKANQKRML--------SDMAIEGGNFTTTYFKSSTIKDLFTM 1827
Query: 695 HDDVRSE 701
+ E
Sbjct: 1828 EQSEQDE 1834
Score = 268 (99.4 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 102/351 (29%), Positives = 163/351 (46%)
Query: 174 ITVDPLLVRF-LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTL 232
+T P L++ LR +Q G+ ++ +N ++G ILAD+MGLGKT+Q+IALL L
Sbjct: 903 VTPVPFLLKHSLREYQHIGLDWLVT-----MNERKLNG-ILADEMGLGKTIQTIALLAHL 956
Query: 233 LCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTD 292
C + P +IV P+S++ NWE E KKW G +++ S ++ + + +T
Sbjct: 957 ACAKGNWGPH----LIVVPSSVMLNWEMEFKKWCPG-FKILTYYGSQKERKLKRV-GWTK 1010
Query: 293 PCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN-------- 339
P ++ V I SY+ F + LI DEA +KN Q L N
Sbjct: 1011 P-NAFHVCITSYKLVVQDQQSFR-RKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLL 1068
Query: 340 ------RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSS 393
+NDL E +++++F P + F+ ++ + G E + L I R
Sbjct: 1069 LTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPMT-GMIEGNMEYNETL-ITR-- 1124
Query: 394 ELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETK 453
L + F+LRR + +P K V+ C+L+ Q LY F+ RA + ET
Sbjct: 1125 -LHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFM-----SRAKTRETL 1178
Query: 454 QS-KILAYITAL---KKLCNHPKLIYDTIKSGNPGTTGFE-DCIRFFPPEM 499
Q+ +L+ I L +K+CNHP + P + F+ D I F P +
Sbjct: 1179 QTGNLLSVINVLMQLRKVCNHPNMF-----EARPTISPFQMDGITFHTPRL 1224
Score = 40 (19.1 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 12/66 (18%), Positives = 25/66 (37%)
Query: 614 FDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQT 673
+D +P N A R+ Q+ + + G +++ Q Q ++ + Q+Q
Sbjct: 2301 YDQPVSPQNIAAMKANKIREKQRGQQMSQPPVGVGVVQQMQQQSQQQQQPAPPPLPQQQQ 2360
Query: 674 DSSATQ 679
Q
Sbjct: 2361 PQQVVQ 2366
Score = 37 (18.1 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 656 QRQMSKEGLQKVIQQEQTDSSATQ 679
Q+Q ++ +Q+V QQ+Q Q
Sbjct: 2357 QQQQPQQVVQQVQQQQQQQQQQQQ 2380
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 474 (171.9 bits), Expect = 3.7e-41, P = 3.7e-41
Identities = 163/562 (29%), Positives = 265/562 (47%)
Query: 162 EEPQNDGGNLVPITVDPLLVRFLRPH---QREGVQFMFECVSGL--LNAAGIHGC--ILA 214
+E Q DG P T DP + +P G M++ + GL L + G ILA
Sbjct: 701 KELQGDGPPSSP-TNDPTVKYETQPRFITATGGTLHMYQ-LEGLNWLRFSWAQGTDTILA 758
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV-------- 266
D+MGLGKT+Q+I LY+L +G P + A P S + NWE E + W
Sbjct: 759 DEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA----PLSTIINWEREFQMWAPKFYVVTY 814
Query: 267 -GGRVQLIALCE---STRDDVVSG-IDSFT---DPCSSLQVLIVSYETFRMHSSKF-SCS 317
G + + E S D+ + G +F + VL+ SYE + + S
Sbjct: 815 TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 874
Query: 318 ESCDLLICDEAHRLKNDQT----LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSII 373
+C L+ DEAHRLKN+Q+ + N ++ + L + + +
Sbjct: 875 WAC--LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 932
Query: 374 CGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSE 433
E E ++ +L + +LRR A + ++P K +V +L+P+Q +
Sbjct: 933 NNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKK 992
Query: 434 LYNHFIHSKNVKRAISEET-KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492
Y + + ++N + S Q +L + LKK CNHP L P E
Sbjct: 993 YYKYIL-TRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLF--------P-VAAMES-- 1040
Query: 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLF 552
P++ SG++ GG A ++ SGK+ +L ++L L+++ R+++ S T+ LDL
Sbjct: 1041 ----PKL---PSGAYEGG--ALIKASGKLMLLQKMLRKLKEQ-GHRVLIFSQMTKMLDLL 1090
Query: 553 AQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLV 612
Y Y R+DG + + RQ+ ++ FN P +F FLLS++AGG G+NL + ++
Sbjct: 1091 EDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1150
Query: 613 LFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ 672
+FD DWNP ND QA +R R GQ +V IYRF++ ++EE++ Q K L ++ +
Sbjct: 1151 IFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG 1210
Query: 673 TDSSATQGNFLSTEDLRDLFTF 694
S A G+ +S ++L D+ F
Sbjct: 1211 LGSKA--GS-MSKQELDDILKF 1229
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 474 (171.9 bits), Expect = 3.7e-41, P = 3.7e-41
Identities = 163/562 (29%), Positives = 265/562 (47%)
Query: 162 EEPQNDGGNLVPITVDPLLVRFLRPH---QREGVQFMFECVSGL--LNAAGIHGC--ILA 214
+E Q DG P T DP + +P G M++ + GL L + G ILA
Sbjct: 703 KELQGDGPPSSP-TNDPTVKYETQPRFITATGGTLHMYQ-LEGLNWLRFSWAQGTDTILA 760
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV-------- 266
D+MGLGKT+Q+I LY+L +G P + A P S + NWE E + W
Sbjct: 761 DEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA----PLSTIINWEREFQMWAPKFYVVTY 816
Query: 267 -GGRVQLIALCE---STRDDVVSG-IDSFT---DPCSSLQVLIVSYETFRMHSSKF-SCS 317
G + + E S D+ + G +F + VL+ SYE + + S
Sbjct: 817 TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 876
Query: 318 ESCDLLICDEAHRLKNDQT----LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSII 373
+C L+ DEAHRLKN+Q+ + N ++ + L + + +
Sbjct: 877 WAC--LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 934
Query: 374 CGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSE 433
E E ++ +L + +LRR A + ++P K +V +L+P+Q +
Sbjct: 935 NNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKK 994
Query: 434 LYNHFIHSKNVKRAISEET-KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492
Y + + ++N + S Q +L + LKK CNHP L P E
Sbjct: 995 YYKYIL-TRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLF--------P-VAAMES-- 1042
Query: 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLF 552
P++ SG++ GG A ++ SGK+ +L ++L L+++ R+++ S T+ LDL
Sbjct: 1043 ----PKL---PSGAYEGG--ALIKASGKLMLLQKMLRKLKEQ-GHRVLIFSQMTKMLDLL 1092
Query: 553 AQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLV 612
Y Y R+DG + + RQ+ ++ FN P +F FLLS++AGG G+NL + ++
Sbjct: 1093 EDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1152
Query: 613 LFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ 672
+FD DWNP ND QA +R R GQ +V IYRF++ ++EE++ Q K L ++ +
Sbjct: 1153 IFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG 1212
Query: 673 TDSSATQGNFLSTEDLRDLFTF 694
S A G+ +S ++L D+ F
Sbjct: 1213 LGSKA--GS-MSKQELDDILKF 1231
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 473 (171.6 bits), Expect = 4.8e-41, P = 4.8e-41
Identities = 163/562 (29%), Positives = 265/562 (47%)
Query: 162 EEPQNDGGNLVPITVDPLLVRFLRPH---QREGVQFMFECVSGL--LNAAGIHGC--ILA 214
+E Q DG P T DP + +P G M++ + GL L + G ILA
Sbjct: 703 KELQGDGPPSSP-TNDPTVKYETQPRFITATGGTLHMYQ-LEGLNWLRFSWAQGTDTILA 760
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV-------- 266
D+MGLGKT+Q+I LY+L +G P + A P S + NWE E + W
Sbjct: 761 DEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA----PLSTIINWEREFQMWAPKFYVVTY 816
Query: 267 -GGRVQLIALCE---STRDDVVSG-IDSFT---DPCSSLQVLIVSYETFRMHSSKF-SCS 317
G + + E S D+ + G +F + VL+ SYE + + S
Sbjct: 817 TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 876
Query: 318 ESCDLLICDEAHRLKNDQT----LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSII 373
+C L+ DEAHRLKN+Q+ + N ++ + L + + +
Sbjct: 877 WAC--LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 934
Query: 374 CGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSE 433
E E ++ +L + +LRR A + ++P K +V +L+P+Q +
Sbjct: 935 NNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKK 994
Query: 434 LYNHFIHSKNVKRAISEET-KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492
Y + + ++N + S Q +L + LKK CNHP L P E
Sbjct: 995 YYKYIL-TRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLF--------P-VAAMES-- 1042
Query: 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLF 552
P++ SG++ GG A ++ SGK+ +L ++L L+++ R+++ S T+ LDL
Sbjct: 1043 ----PKL---PSGAYEGG--ALIKSSGKLMLLQKMLRKLKEQ-GHRVLIFSQMTKMLDLL 1092
Query: 553 AQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLV 612
Y Y R+DG + + RQ+ ++ FN P +F FLLS++AGG G+NL + ++
Sbjct: 1093 EDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1152
Query: 613 LFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ 672
+FD DWNP ND QA +R R GQ +V IYRF++ ++EE++ Q K L ++ +
Sbjct: 1153 IFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG 1212
Query: 673 TDSSATQGNFLSTEDLRDLFTF 694
S A G+ +S ++L D+ F
Sbjct: 1213 LGSKA--GS-MSKQELDDILKF 1231
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 473 (171.6 bits), Expect = 5.0e-41, P = 5.0e-41
Identities = 163/562 (29%), Positives = 265/562 (47%)
Query: 162 EEPQNDGGNLVPITVDPLLVRFLRPH---QREGVQFMFECVSGL--LNAAGIHGC--ILA 214
+E Q DG P T DP + +P G M++ + GL L + G ILA
Sbjct: 762 KELQGDGPPSSP-TNDPTVKYETQPRFITATGGTLHMYQ-LEGLNWLRFSWAQGTDTILA 819
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV-------- 266
D+MGLGKT+Q+I LY+L +G P + A P S + NWE E + W
Sbjct: 820 DEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA----PLSTIINWEREFQMWAPKFYVVTY 875
Query: 267 -GGRVQLIALCE---STRDDVVSG-IDSFT---DPCSSLQVLIVSYETFRMHSSKF-SCS 317
G + + E S D+ + G +F + VL+ SYE + + S
Sbjct: 876 TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 935
Query: 318 ESCDLLICDEAHRLKNDQT----LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSII 373
+C L+ DEAHRLKN+Q+ + N ++ + L + + +
Sbjct: 936 WAC--LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 993
Query: 374 CGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSE 433
E E ++ +L + +LRR A + ++P K +V +L+P+Q +
Sbjct: 994 NNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKK 1053
Query: 434 LYNHFIHSKNVKRAISEET-KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492
Y + + ++N + S Q +L + LKK CNHP L P E
Sbjct: 1054 YYKYIL-TRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLF--------P-VAAMES-- 1101
Query: 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLF 552
P++ SG++ GG A ++ SGK+ +L ++L L+++ R+++ S T+ LDL
Sbjct: 1102 ----PKL---PSGAYEGG--ALIKSSGKLMLLQKMLRKLKEQ-GHRVLIFSQMTKMLDLL 1151
Query: 553 AQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLV 612
Y Y R+DG + + RQ+ ++ FN P +F FLLS++AGG G+NL + ++
Sbjct: 1152 EDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1211
Query: 613 LFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ 672
+FD DWNP ND QA +R R GQ +V IYRF++ ++EE++ Q K L ++ +
Sbjct: 1212 IFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG 1271
Query: 673 TDSSATQGNFLSTEDLRDLFTF 694
S A G+ +S ++L D+ F
Sbjct: 1272 LGSKA--GS-MSKQELDDILKF 1290
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 475 (172.3 bits), Expect = 5.0e-41, P = 5.0e-41
Identities = 159/530 (30%), Positives = 251/530 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N + CILAD+MGLGKT+QSI LY + +G G P
Sbjct: 961 LREYQLEGVNWL------LFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHG-PF- 1012
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + F DP +V+ S
Sbjct: 1013 ---LVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG--RVIKGS 1067
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKND--QTLTNRN--DLEEFFAM 349
Y+ TF M + C E ++ ++ DEAHRLKN + L DLE +
Sbjct: 1068 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 1125
Query: 350 VNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERS-SELSAKVNQFILRRTN 408
+ + + E S E T +E L E +L A + +LRR
Sbjct: 1126 TGTPLQNTVEELFSLLHFLEPSRFPS-ETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK 1184
Query: 409 ALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI---LAYITALK 465
+ +L PK ++ +LT +Q + Y + KN +S+ Q+ + L + L+
Sbjct: 1185 EDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFT-FLSKGGGQANVPNLLNTMMELR 1242
Query: 466 KLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLA 525
K CNHP LI G E+ I E + S + A ++ +GK+ ++
Sbjct: 1243 KCCNHPYLI-----------NGAEEKILEEFKETHNADSPDFQLQ--AMIQAAGKLVLID 1289
Query: 526 RLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDP 585
+LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++ F+ P
Sbjct: 1290 KLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKP 1348
Query: 586 SKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPA--NDKQAAARVWRDGQKKRVFIYR 643
+ FVFLL ++AGG G+NL + ++FD DWNP + QA AR R GQ K V IYR
Sbjct: 1349 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPKMISSFQAQARCHRIGQSKSVKIYR 1408
Query: 644 FLSTGTIEEKVYQRQMSKEGLQKVIQQEQTD-SSATQG-NFLSTEDLRDL 691
++ + E +++ + K GL K + Q + +A G LS +++ DL
Sbjct: 1409 LITRNSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIEDL 1458
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 390 (142.3 bits), Expect = 5.1e-41, Sum P(3) = 5.1e-41
Identities = 124/389 (31%), Positives = 192/389 (49%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N++ E +++ +F PG LG F Y I+ R+ ++ E++ G+ L +V
Sbjct: 265 QNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQV 324
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK-------NVKRA-ISEE 451
F+LRR + LPPKII+ C L+PLQ +LY F S+ V A +SEE
Sbjct: 325 LPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEE 384
Query: 452 TKQSKILAY------ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRF-------FPPE 498
T++ K+ A + L+KLCNHP L+ T + TT + ++ P+
Sbjct: 385 TEKPKLKATGHVFQALQYLRKLCNHPALVL-TPQHPEFKTTAEKLAVQNSSLHDIQHAPK 443
Query: 499 MFSGRSGSWT-G-GDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLC 556
+ + + G G+G+ E SG V+A+ H RI++ LD+
Sbjct: 444 LSALKQLLLDCGLGNGSTSE-SGTESVVAQ---H-------RILIFCQLKSMLDIVEHDL 492
Query: 557 RERRYP---YLRLDGTTSISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLV 612
+ P YLRLDG+ +R +V+ FN DPS + V LL++ GG GLNL G + +V
Sbjct: 493 LKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSID--VLLLTTHVGGLGLNLTGADTVV 550
Query: 613 LFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ 672
+ DWNP D QA R R GQK+ V +YR ++ GT+EEK+ Q K + + ++
Sbjct: 551 FVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQE 610
Query: 673 TDSSATQGNFLSTEDLRDLFTFHDDVRSE 701
S + G T+ L DLFT D ++E
Sbjct: 611 NSSLQSMG----TDQLLDLFTLDKDGKAE 635
Score = 119 (46.9 bits), Expect = 5.1e-41, Sum P(3) = 5.1e-41
Identities = 47/160 (29%), Positives = 74/160 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLC---QGFDGK 240
LR +Q++GV ++ LN +HG IL DDMGLGKTLQSI +L C Q +
Sbjct: 94 LRKYQQDGVNWL-----AFLNKYKLHG-ILCDDMGLGKTLQSICILAGDHCHRAQEYARS 147
Query: 241 PMVK----KAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296
+ + +++V P +L +W E+ K+ R L L + I
Sbjct: 148 KLAECMPLPSLVVCPPTLTGHWVDEVGKFCS-REYLNPLHYT--GPPTERI-RLQHQVKR 203
Query: 297 LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT 336
+++ SY+ R + F + + I DE H +KN +T
Sbjct: 204 HNLIVASYDVVR-NDIDFFRNIKFNYCILDEGHVIKNGKT 242
Score = 43 (20.2 bits), Expect = 5.1e-41, Sum P(3) = 5.1e-41
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 781 MSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSPK 818
+S ++ LQ+ D++ +FT DGK ++ S K
Sbjct: 607 ISQENSSLQSMGTDQLLDLFTLDKDGKAEKADTSTSGK 644
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 307 (113.1 bits), Expect = 5.2e-41, Sum P(3) = 5.2e-41
Identities = 70/201 (34%), Positives = 113/201 (56%)
Query: 497 PEMFSGRS-GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G G D V SGKM +L +LL L+++ R+++ S T+ LD+
Sbjct: 408 PYLFDGAEPGPPYTTDTHLVYNSGKMAILDKLLPKLQEQ-GSRVLIFSQMTRMLDILEDY 466
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
C R Y Y RLDG T R + + FN + +F+F+LS++AGG G+NL + ++++D
Sbjct: 467 CHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYD 526
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQ--EQT 673
DWNP D QA R R GQKK+V ++R ++ T+EEK+ +R K L K++ Q
Sbjct: 527 SDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLV 586
Query: 674 DSSATQGNFLSTEDLRDLFTF 694
D+ + Q L+ +++ ++ F
Sbjct: 587 DNRSNQ---LNKDEMLNIIRF 604
Score = 225 (84.3 bits), Expect = 5.2e-41, Sum P(3) = 5.2e-41
Identities = 94/327 (28%), Positives = 144/327 (44%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
+R +Q G+ +M L GI+G ILAD+MGLGKTLQ+I+LL L + F K
Sbjct: 128 MRDYQIRGLNWMIS-----LYENGING-ILADEMGLGKTLQTISLLGYL--KHF--KNQA 177
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC----ESTRDDVVSGIDSFTDPCSSLQV 299
I++ P S + NW E KKW L A+C + TR+ + + P V
Sbjct: 178 GPHIVIVPKSTLQNWVNEFKKWCPS---LRAVCLIGDQDTRNTFIRDV---LMP-GEWDV 230
Query: 300 LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR--------- 340
+ SYE S F + L+ DEAHR+KN+++ NR
Sbjct: 231 CVTSYEMCIREKSVFK-KFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQ 289
Query: 341 NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVN 400
N+L E +A++NF P + + F ++ T+ G + T L A +
Sbjct: 290 NNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDALITR------------LHAVLK 337
Query: 401 QFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNH-FIHSKNVKRAISEETKQSKILA 459
F+LRR A + L PK + L+ +Q + Y + +V + K ++
Sbjct: 338 PFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKDIDVVNGAGKVEKM-RLQN 396
Query: 460 YITALKKLCNHPKLIYDTIKSGNPGTT 486
+ L+K NHP L +D + G P TT
Sbjct: 397 ILMQLRKCTNHPYL-FDGAEPGPPYTT 422
Score = 41 (19.5 bits), Expect = 5.2e-41, Sum P(3) = 5.2e-41
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 812 ESKVSPK--MQATEGNKNPNNHITNPKPKLDQR 842
+ K +PK + A G+ + N P+PK Q+
Sbjct: 978 KKKKAPKGSVSAGSGSASSNTPAPAPQPKASQK 1010
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 316 (116.3 bits), Expect = 5.4e-41, Sum P(4) = 5.4e-41
Identities = 80/225 (35%), Positives = 120/225 (53%)
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK+ LA LL L+Q+ R ++ + T+ LD+F Y YLRLDG+T I KRQ L
Sbjct: 1379 GKLQQLAILLRRLKQQ-GHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVL 1437
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
FN K F+F+LS+++GG GLNL G + ++ +D DWNP+ D QA R R GQ +
Sbjct: 1438 TERFNTDPKI-FLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTRE 1496
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQK-VIQQEQTDSSATQGNFLSTEDLRDLFTFHDD 697
V IYRF++ TIEE + ++ K L K VI+ + + + LST+ D T D+
Sbjct: 1497 VNIYRFITQHTIEENILKKSNQKRQLDKMVIKAGEFTTDFFKNLNLSTKSSID--TIKDN 1554
Query: 698 VRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTD 742
V + EN + +D ++ + + A+ Q E+ D
Sbjct: 1555 VTQQEWENA----VEQAEDESDVLAYKNALKEADNEYQEFVEIKD 1595
Score = 249 (92.7 bits), Expect = 5.4e-41, Sum P(4) = 5.4e-41
Identities = 91/316 (28%), Positives = 152/316 (48%)
Query: 178 PLLVRF-LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236
P L++F LR +Q G+ ++ VS L ++G ILAD+MGLGKT+ +I+L+ L Q
Sbjct: 774 PFLLKFPLREYQHIGLDWL---VS--LYEKNLNG-ILADEMGLGKTIMTISLIAYLAVQ- 826
Query: 237 FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296
K + +IV P+S++ NWE E K+W G +++ ++RD + ++
Sbjct: 827 ---KGVWGPHLIVVPSSVLFNWEMEFKRWCPG-LKIFTYHGTSRDRKANR--KGWSKSNA 880
Query: 297 LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------------LTN- 339
V I SY F + +I DEAH +KN +T LT
Sbjct: 881 FHVCITSYSMVMSDHLIFR-RKKWVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGT 939
Query: 340 --RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
+N+L E +++++F P I F+ ++ + G + + + I R L A
Sbjct: 940 PLQNNLMELWSLMHFLMPDIFQSHREFQDWFSNPVT-GMIEGGDDVNEDI-INR---LHA 994
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ F+LRR + +PPK +V C ++ Q LY FI+S + + +S + S I
Sbjct: 995 VLRPFLLRRLKKDVEKQMPPKHTHIVPCSMSRRQKFLYEEFINSSSTQSTLSSGSFFS-I 1053
Query: 458 LAYITALKKLCNHPKL 473
+ + L+K+CNHP L
Sbjct: 1054 INILMQLRKVCNHPDL 1069
Score = 73 (30.8 bits), Expect = 8.6e-17, Sum P(4) = 8.6e-17
Identities = 43/188 (22%), Positives = 74/188 (39%)
Query: 667 VIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDE 726
V +Q S+ T + + DLF +E+ T N ++ +
Sbjct: 2247 VSKQGGVPSTTTNSSTSRKKSEYDLFDASSQDEGSTNESGSTTNNNNINNPTST--SSSS 2304
Query: 727 TNSANKNDQSDQEVTDIGGFAGLAGC-LHKLKSSEKQLGTPLEEDL--NNWGHHFYSMSV 783
++S K D+ Q ++ G G G L SS G + DL N+ G +S
Sbjct: 2305 SSSGRKRDRKKQRLSKSNGGVGGGGSDLESPISSSSISGIFINSDLILNHMGPP-WSQQE 2363
Query: 784 PDAILQ--ASAG---DEVTFVFTNQVDGKLVPI---ESKVSPKMQATEG-NKNPNNHITN 834
IL + G D +TF+ N ++ + +S++S + + + N N NN+ N
Sbjct: 2364 DKLILDNVKNFGENWDLITFIIQNSNYSRINRVTRSKSQISERYKVIQKENNNENNNGNN 2423
Query: 835 PKPKLDQR 842
P DQ+
Sbjct: 2424 KSPIGDQQ 2431
Score = 49 (22.3 bits), Expect = 5.6e-14, Sum P(4) = 5.6e-14
Identities = 34/184 (18%), Positives = 69/184 (37%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTR 710
+++ Q+Q K+ Q+ QQ+Q Q L ++ +D ++ + + +EN +
Sbjct: 1696 QQQQQQQQKQKQQQQQQQQQQQQQQQQQQPKILKLDE-KDKENLKENEKEKENENEN--- 1751
Query: 711 CQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEED 770
+N E+ E ++ N + Q + +I G K EK+ ++D
Sbjct: 1752 -EN-----ENENEKEKDNEKEREKQEKENEIEIEKEKGNEKENEKENEKEKENERDKDKD 1805
Query: 771 LNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSPKMQATEGNKNPNN 830
+ M + + I + DE + N + + +S N N NN
Sbjct: 1806 KDQDQDKDQEMKIINEIPPKNDEDEDNNINNNNNNNNNNN-NNNLSNNGNGDNNNNNNNN 1864
Query: 831 HITN 834
+ N
Sbjct: 1865 NNNN 1868
Score = 48 (22.0 bits), Expect = 1.8e-13, Sum P(4) = 1.8e-13
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 698 VRSEIHENMHCTRCQNY--DDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHK 755
++SE E+ +Y +DGA+ E D+ +D+++ + GG G G K
Sbjct: 1929 IKSEFKEDNIIVNDNDYNEEDGADD--EADDDGDDEADDENEGNDFEGGGRGGRVGEGKK 1986
Query: 756 LKSSEKQ 762
+ +K+
Sbjct: 1987 VMIEKKK 1993
Score = 48 (22.0 bits), Expect = 3.5e-13, Sum P(5) = 3.5e-13
Identities = 21/116 (18%), Positives = 45/116 (38%)
Query: 622 NDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGN 681
N+K+ R+ Q+K I G +E + + KE + + + D Q
Sbjct: 1757 NEKEKDNEKEREKQEKENEIEIEKEKGNEKENEKENEKEKENERDKDKDKDQDQDKDQ-- 1814
Query: 682 FLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSD 737
+ + ++ +D+ N + N ++ + G GD N+ N N+ ++
Sbjct: 1815 --EMKIINEIPPKNDEDEDNNINNNNNNNNNNNNNNLSNNGNGDNNNNNNNNNNNN 1868
Score = 43 (20.2 bits), Expect = 8.6e-17, Sum P(4) = 8.6e-17
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 445 KRAISEETKQSKILAYITALKKLCN 469
+ A+ + +S +LAY ALK+ N
Sbjct: 1561 ENAVEQAEDESDVLAYKNALKEADN 1585
Score = 42 (19.8 bits), Expect = 8.6e-17, Sum P(4) = 8.6e-17
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 617 DWNPANDKQAAARVWRDGQKKRVFI 641
D N ND + R R G+ K+V I
Sbjct: 1965 DENEGNDFEGGGRGGRVGEGKKVMI 1989
Score = 40 (19.1 bits), Expect = 1.8e-13, Sum P(5) = 1.8e-13
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 646 STGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQ 679
S GT+ ++ ++Q ++ Q+ QQ+Q Q
Sbjct: 1660 SYGTVTKQQLKQQQQQQQQQQQQQQQQQQQQQQQ 1693
Score = 40 (19.1 bits), Expect = 7.0e-13, Sum P(5) = 7.0e-13
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDL 691
+++ Q+Q ++ Q+ QQ+Q Q L + L+ L
Sbjct: 2707 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQMQQLQQQQLQQL 2747
Score = 39 (18.8 bits), Expect = 1.8e-13, Sum P(4) = 1.8e-13
Identities = 16/81 (19%), Positives = 37/81 (45%)
Query: 603 LNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSK- 661
LNL+ + L+ ++ ++ + Q + + ++ +F +S I + Q+Q +
Sbjct: 1106 LNLLNLD-LINYENSFSHYDSNQINSLIPKESVLLELFNQLAISLPNISQYNQQQQQQQL 1164
Query: 662 EGLQKVIQQEQTDSSATQGNF 682
+ Q+ +QQ+Q Q F
Sbjct: 1165 QQQQQQLQQQQLQQQQFQQQF 1185
Score = 38 (18.4 bits), Expect = 5.4e-41, Sum P(4) = 5.4e-41
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 825 NKNPNNHITNPKP 837
N N NN+I N P
Sbjct: 2917 NNNNNNNINNNNP 2929
Score = 37 (18.1 bits), Expect = 5.4e-41, Sum P(4) = 5.4e-41
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 727 TNSANKNDQSDQEVTDIGG 745
T +D+SD E+ D G
Sbjct: 2222 TGGVANSDKSDAELEDFAG 2240
Score = 37 (18.1 bits), Expect = 6.8e-41, Sum P(4) = 6.8e-41
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 814 KVSPKMQATEGNKNPNNHITNPKPK 838
+ +PK+ A N N NN+I +P+
Sbjct: 3046 QTTPKLAAQPLNNN-NNNIYTYQPQ 3069
Score = 37 (18.1 bits), Expect = 1.4e-12, Sum P(5) = 1.4e-12
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 657 RQMSKEGLQKVIQQEQTDSSATQ 679
+Q++ + LQ++ QQ+Q Q
Sbjct: 2669 QQLTPQQLQQLAQQQQLQQQQQQ 2691
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 485 (175.8 bits), Expect = 5.8e-41, Sum P(2) = 5.8e-41
Identities = 154/521 (29%), Positives = 246/521 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+Q+M + LN ILAD+MGLGKT+Q+I+LL T L ++ K +
Sbjct: 767 LKDYQIKGLQWMVSLFNNHLNG------ILADEMGLGKTIQTISLL-TYL---YEMKNIR 816
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S +SNW +E KW ++ I+ S + V++ +
Sbjct: 817 GPYLVIVPLSTLSNWSSEFAKWAP-TLRTISFKGSPNERKAKQAKI---RAGEFDVVLTT 872
Query: 304 YETFRMHSSKFSCSESCDLLICDEAHRLKNDQT-----------------LTN---RNDL 343
+E + S + ++I DE HR+KN Q+ LT +N+L
Sbjct: 873 FEYIIKERALLSKVKWVHMII-DEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNL 931
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIIC--GREPTATEEEKKLGIERSSELSAKVNQ 401
E +A++NF P I F ++ T G++ EE+ L + R L +
Sbjct: 932 PELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIR--RLHKVLRP 989
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAY- 460
F+LRR + LP K+ +VV CK++ LQ +Y + + + K + +
Sbjct: 990 FLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFN 1049
Query: 461 --ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELS 518
I LKK+CNHP +++ + ED I P + D W ++
Sbjct: 1050 NQIMQLKKICNHP-FVFEEV----------EDQIN---PTRETN--------DDIW-RVA 1086
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK +L R+L L+ T R+++ TQ +D+ R YLRLDG T +R +L
Sbjct: 1087 GKFELLDRILPKLKA-TGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSEL 1145
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
+ FN P F+LS++AGG GLNL + +++FD DWNP D QA R R GQK
Sbjct: 1146 LRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNE 1205
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSSAT 678
V I R ++T ++EE + +R K + KVIQ + D+ +T
Sbjct: 1206 VRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKST 1246
Score = 38 (18.4 bits), Expect = 5.8e-41, Sum P(2) = 5.8e-41
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 676 SATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKND 734
+AT + +S E F DD +++ T+ ++ + + GE N ND
Sbjct: 1356 TATYNDNMSEEQWLRQFEVSDDEKNDKQARKQRTKKEDKSEAIDGNGEIKGENIDADND 1414
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 472 (171.2 bits), Expect = 5.8e-41, P = 5.8e-41
Identities = 163/562 (29%), Positives = 265/562 (47%)
Query: 162 EEPQNDGGNLVPITVDPLLVRFLRPH---QREGVQFMFECVSGL--LNAAGIHGC--ILA 214
+E Q DG P T DP + +P G M++ + GL L + G ILA
Sbjct: 659 KEIQGDGPPSSP-TNDPTVKYETQPRFITATGGTLHMYQ-LEGLNWLRFSWAQGTDTILA 716
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV-------- 266
D+MGLGKT+Q+I LY+L +G P + A P S + NWE E + W
Sbjct: 717 DEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA----PLSTIINWEREFQMWAPKFYVVTY 772
Query: 267 -GGRVQLIALCE---STRDDVVSG-IDSFT---DPCSSLQVLIVSYETFRMHSSKF-SCS 317
G + + E S D+ + G +F + VL+ SYE + + S
Sbjct: 773 TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 832
Query: 318 ESCDLLICDEAHRLKNDQT----LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSII 373
+C L+ DEAHRLKN+Q+ + N ++ + L + + +
Sbjct: 833 WAC--LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 890
Query: 374 CGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSE 433
E E ++ +L + +LRR A + ++P K +V +L+P+Q +
Sbjct: 891 NNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKK 950
Query: 434 LYNHFIHSKNVKRAISEET-KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492
Y + + ++N + S Q +L + LKK CNHP L P E
Sbjct: 951 YYKYIL-TRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLF--------P-VAAMES-- 998
Query: 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLF 552
P++ SG++ GG A ++ SGK+ +L ++L L+++ R+++ S T+ LDL
Sbjct: 999 ----PKL---PSGAYEGG--ALIKSSGKLLLLQKMLRKLKEQ-GHRVLIFSQMTKMLDLL 1048
Query: 553 AQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLV 612
Y Y R+DG + + RQ+ ++ FN P +F FLLS++AGG G+NL + ++
Sbjct: 1049 EDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1108
Query: 613 LFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ 672
+FD DWNP ND QA +R R GQ +V IYRF++ ++EE++ Q K L ++ +
Sbjct: 1109 IFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG 1168
Query: 673 TDSSATQGNFLSTEDLRDLFTF 694
S A G+ +S ++L D+ F
Sbjct: 1169 LGSKA--GS-MSKQELDDILKF 1187
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 471 (170.9 bits), Expect = 6.0e-41, P = 6.0e-41
Identities = 164/563 (29%), Positives = 262/563 (46%)
Query: 184 LRPHQREGVQFM-FECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPM 242
L P+Q EG+ ++ F G ILAD+MGLGKT+Q+I LY+L +G P
Sbjct: 616 LHPYQLEGLNWLRFSWAQGT-------DTILADEMGLGKTVQTIVFLYSLYKEGHSKGPY 668
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWV---------GGRVQLIALCE---STRDDVV-SGIDS 289
+ A P S + NWE E + W G + + E S D+ + SG
Sbjct: 669 LVSA----PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKV 724
Query: 290 FT---DPCSSLQVLIVSYETFRMHSSKFSCSE-SCDLLICDEAHRLKNDQTLTNR--NDL 343
F + VL+ SYE + + E +C L+ DEAHRLKN+Q+ R N
Sbjct: 725 FRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC--LVVDEAHRLKNNQSKFFRVLNSY 782
Query: 344 EEFFAMVNFTNP--GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
+ + ++ P L + + + E E ++ +L +
Sbjct: 783 KIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 842
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEET-KQSKILAY 460
+LRR A + ++P K +V +L+ +Q + Y FI ++N + S+ Q +L
Sbjct: 843 HMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQVSLLNI 901
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
+ LKK CNHP L P E + P +GS+ G + V+ SGK
Sbjct: 902 MMDLKKCCNHPYLF--------P-VAAVEAPV--LP-------NGSYDGS--SLVKSSGK 941
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+ +L ++L LR R+++ S T+ LDL Y Y R+DG + RQ+ ++
Sbjct: 942 LMLLQKMLKKLRDE-GHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID 1000
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R GQ K+V
Sbjct: 1001 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM 1060
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFT---FHDD 697
IYRF++ ++EE++ Q K L ++ + S + +D+ T F DD
Sbjct: 1061 IYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDD 1120
Query: 698 VRSEIHENMHCTRCQNYDDGAES 720
V + ++++ + +YDD A S
Sbjct: 1121 VEGD-NKDVEDSSVIHYDDAAIS 1142
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 465 (168.7 bits), Expect = 6.1e-41, P = 6.1e-41
Identities = 165/530 (31%), Positives = 245/530 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 6 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 55
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 56 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 110
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 111 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 169
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 170 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 226
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 227 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 281
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL--- 517
K L N I K N F+ E FS G +TGG ++L
Sbjct: 282 -GGTKTLMN---TIMQLRKICNHPYM-FQHI-----EESFSEHLG-FTGGIVQGLDLYRA 330
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R
Sbjct: 331 SGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 389
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+
Sbjct: 390 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 449
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 450 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 499
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 472 (171.2 bits), Expect = 6.3e-41, P = 6.3e-41
Identities = 163/562 (29%), Positives = 265/562 (47%)
Query: 162 EEPQNDGGNLVPITVDPLLVRFLRPH---QREGVQFMFECVSGL--LNAAGIHGC--ILA 214
+E Q DG P T DP + +P G M++ + GL L + G ILA
Sbjct: 754 KEIQGDGPPSSP-TNDPTVKYETQPRFITATGGTLHMYQ-LEGLNWLRFSWAQGTDTILA 811
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV-------- 266
D+MGLGKT+Q+I LY+L +G P + A P S + NWE E + W
Sbjct: 812 DEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA----PLSTIINWEREFQMWAPKFYVVTY 867
Query: 267 -GGRVQLIALCE---STRDDVVSG-IDSFT---DPCSSLQVLIVSYETFRMHSSKF-SCS 317
G + + E S D+ + G +F + VL+ SYE + + S
Sbjct: 868 TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 927
Query: 318 ESCDLLICDEAHRLKNDQT----LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSII 373
+C L+ DEAHRLKN+Q+ + N ++ + L + + +
Sbjct: 928 WAC--LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 985
Query: 374 CGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSE 433
E E ++ +L + +LRR A + ++P K +V +L+P+Q +
Sbjct: 986 NNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKK 1045
Query: 434 LYNHFIHSKNVKRAISEET-KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492
Y + + ++N + S Q +L + LKK CNHP L P E
Sbjct: 1046 YYKYIL-TRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLF--------P-VAAMES-- 1093
Query: 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLF 552
P++ SG++ GG A ++ SGK+ +L ++L L+++ R+++ S T+ LDL
Sbjct: 1094 ----PKL---PSGAYEGG--ALIKSSGKLLLLQKMLRKLKEQ-GHRVLIFSQMTKMLDLL 1143
Query: 553 AQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLV 612
Y Y R+DG + + RQ+ ++ FN P +F FLLS++AGG G+NL + ++
Sbjct: 1144 EDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1203
Query: 613 LFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ 672
+FD DWNP ND QA +R R GQ +V IYRF++ ++EE++ Q K L ++ +
Sbjct: 1204 IFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG 1263
Query: 673 TDSSATQGNFLSTEDLRDLFTF 694
S A G+ +S ++L D+ F
Sbjct: 1264 LGSKA--GS-MSKQELDDILKF 1282
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 472 (171.2 bits), Expect = 6.4e-41, P = 6.4e-41
Identities = 163/562 (29%), Positives = 265/562 (47%)
Query: 162 EEPQNDGGNLVPITVDPLLVRFLRPH---QREGVQFMFECVSGL--LNAAGIHGC--ILA 214
+E Q DG P T DP + +P G M++ + GL L + G ILA
Sbjct: 754 KEIQGDGPPSSP-TNDPTVKYETQPRFITATGGTLHMYQ-LEGLNWLRFSWAQGTDTILA 811
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV-------- 266
D+MGLGKT+Q+I LY+L +G P + A P S + NWE E + W
Sbjct: 812 DEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA----PLSTIINWEREFQMWAPKFYVVTY 867
Query: 267 -GGRVQLIALCE---STRDDVVSG-IDSFT---DPCSSLQVLIVSYETFRMHSSKF-SCS 317
G + + E S D+ + G +F + VL+ SYE + + S
Sbjct: 868 TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 927
Query: 318 ESCDLLICDEAHRLKNDQT----LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSII 373
+C L+ DEAHRLKN+Q+ + N ++ + L + + +
Sbjct: 928 WAC--LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 985
Query: 374 CGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSE 433
E E ++ +L + +LRR A + ++P K +V +L+P+Q +
Sbjct: 986 NNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKK 1045
Query: 434 LYNHFIHSKNVKRAISEET-KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492
Y + + ++N + S Q +L + LKK CNHP L P E
Sbjct: 1046 YYKYIL-TRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLF--------P-VAAMES-- 1093
Query: 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLF 552
P++ SG++ GG A ++ SGK+ +L ++L L+++ R+++ S T+ LDL
Sbjct: 1094 ----PKL---PSGAYEGG--ALIKSSGKLLLLQKMLRKLKEQ-GHRVLIFSQMTKMLDLL 1143
Query: 553 AQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLV 612
Y Y R+DG + + RQ+ ++ FN P +F FLLS++AGG G+NL + ++
Sbjct: 1144 EDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1203
Query: 613 LFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ 672
+FD DWNP ND QA +R R GQ +V IYRF++ ++EE++ Q K L ++ +
Sbjct: 1204 IFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG 1263
Query: 673 TDSSATQGNFLSTEDLRDLFTF 694
S A G+ +S ++L D+ F
Sbjct: 1264 LGSKA--GS-MSKQELDDILKF 1282
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 470 (170.5 bits), Expect = 7.2e-41, P = 7.2e-41
Identities = 165/535 (30%), Positives = 252/535 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 746 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 795
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 796 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 850
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 851 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 909
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 910 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 966
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSK---- 456
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 967 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGKGGTK 1025
Query: 457 -ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWV 515
++ I L+K+CNHP + + I+ E FS G +TGG +
Sbjct: 1026 TLMNTIMQLRKICNHPYM-FQHIE------------------ESFSEHLG-FTGGIVQGL 1065
Query: 516 EL---SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSI 572
+L SGK +L R+L LR T+ +++L T + + R + YLRLDGTT
Sbjct: 1066 DLYRASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKA 1124
Query: 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWR 632
R L+ FN+P +E+ LLS++AGG GLNL + +++FD DWNP D QA R R
Sbjct: 1125 EDRGMLLT-FNEPG-SEYFILLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1182
Query: 633 DGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
GQ+ V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1183 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1237
>FB|FBgn0034976 [details] [associations]
symbol:CG4049 species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 RefSeq:NP_611885.3
UniGene:Dm.15012 ProteinModelPortal:Q9W1A8 SMR:Q9W1A8
MINT:MINT-1613726 EnsemblMetazoa:FBtr0072285 GeneID:37860
KEGG:dme:Dmel_CG4049 UCSC:CG4049-RA FlyBase:FBgn0034976
InParanoid:Q9W1A8 OMA:KCETDLD OrthoDB:EOG4N8PKK PhylomeDB:Q9W1A8
GenomeRNAi:37860 NextBio:805742 Bgee:Q9W1A8 Uniprot:Q9W1A8
Length = 1669
Score = 288 (106.4 bits), Expect = 7.7e-41, Sum P(4) = 7.7e-41
Identities = 74/214 (34%), Positives = 112/214 (52%)
Query: 537 DRIVLVSNYTQTLDLFAQLCRERRYP-----------YLRLDGTTSISKRQKLVNHFNDP 585
DRI+L S TL+L + P Y RLDG+TS +R++LVN FN
Sbjct: 978 DRILLFSQSLLTLNLLEVYLKSSYVPGSNQLWTKNSSYFRLDGSTSSQERERLVNEFNAN 1037
Query: 586 SKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFL 645
S N +FL+S++AG G+NL G NR+++FD WNP +D QA R++R GQ K F+YR +
Sbjct: 1038 S-NVKLFLISTRAGSLGINLTGANRVIIFDASWNPCHDTQAVYRIYRYGQTKPCFVYRIV 1096
Query: 646 STGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHEN 705
+E+K+Y RQ+ K+G+ I E + LS +D+ +L +D + E
Sbjct: 1097 MDRCLEKKIYDRQIKKQGMSDRIVDECNPEA-----HLSMKDITNLCQDYDSDEDTVEEV 1151
Query: 706 MHCTRCQNYDDGAESIGEGDETNSANKNDQSDQE 739
T + G+ S EG + SAN + + +
Sbjct: 1152 NKSTGDLS-KPGSPS-EEGSKPGSANMSPNASNK 1183
Score = 143 (55.4 bits), Expect = 7.7e-41, Sum P(4) = 7.7e-41
Identities = 40/140 (28%), Positives = 69/140 (49%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ MV+F P LG F +E I G+ +T ++ KL R+ L + +
Sbjct: 602 QNNLLEYWCMVDFVRPNYLGTRTEFCNMFERPIQNGQCVDSTPDDIKLMRYRAHVLHSLL 661
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+ RR++ +L LP K V+ K+T Q +LY+ F+ +A K +
Sbjct: 662 LGFVQRRSHTVLQLTLPQKYEYVILVKMTAFQRKLYDTFMTDVVRTKAFPNPLKAFAVCC 721
Query: 460 YITALKKLCNHPKLIYDTIK 479
K+ NHP ++Y+ +K
Sbjct: 722 ------KIWNHPDVLYNFLK 735
Score = 136 (52.9 bits), Expect = 7.7e-41, Sum P(4) = 7.7e-41
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 178 PLLVRFLRPHQREGVQFMFECV---SGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
P + + ++PHQ GV+F+++ + + N + GCILA MGLGKTLQ ++ C
Sbjct: 385 PQIAKVIKPHQIGGVRFLYDNIIESTRRYNKSSGFGCILAHSMGLGKTLQVVSF-----C 439
Query: 235 QGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
F K + V P + + NW +E W+
Sbjct: 440 DIFLRHTSAKTVLCVMPINTLQNWLSEFNMWI 471
Score = 61 (26.5 bits), Expect = 7.7e-41, Sum P(4) = 7.7e-41
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 321 DLLICDEAHRLKN 333
DL+ICDE HR+KN
Sbjct: 564 DLVICDEGHRIKN 576
Score = 37 (18.1 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 24/110 (21%), Positives = 42/110 (38%)
Query: 737 DQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHF-----YSMSVPDAILQAS 791
D+EVT G A + S L +PLE+ +N G +S + +
Sbjct: 746 DEEVTK--GAA--TPIVEPSADSSLSLASPLEKKINGSGDPINSIETFSKAENQTLFNIP 801
Query: 792 AGDEVTFVFTNQVDGKLVPIESKVSPKMQATEGNKNPNNHITN----PKP 837
A ++ + N+ + K P + G++ NN+ + PKP
Sbjct: 802 ASSDLNAKYLNKSPSFY---DEKPEPLNYGSFGSEGKNNYWMDSSILPKP 848
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 465 (168.7 bits), Expect = 9.1e-41, P = 9.1e-41
Identities = 165/530 (31%), Positives = 245/530 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 87 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 136
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 137 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 191
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 192 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 250
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 251 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 307
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 308 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 362
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL--- 517
K L N I K N F+ E FS G +TGG ++L
Sbjct: 363 -GGTKTLMN---TIMQLRKICNHPYM-FQHI-----EESFSEHLG-FTGGIVQGLDLYRA 411
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R
Sbjct: 412 SGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 470
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+
Sbjct: 471 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 530
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 531 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 580
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 485 (175.8 bits), Expect = 1.0e-40, Sum P(3) = 1.0e-40
Identities = 162/547 (29%), Positives = 262/547 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q +G+Q+M + LN ILAD+MGLGKT+Q+IAL+ L+ + P
Sbjct: 1711 LKPYQMQGLQWMVSLYNNKLNG------ILADEMGLGKTIQTIALVSYLIEVKKNNGPF- 1763
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
++V P S +SNW E KW +V+ + L + S + F P ++ +
Sbjct: 1764 ---LVVVPLSTLSNWGQEFSKWAP-KVKRV-LYYGDKPARKSKFEEFIAP-GQFNAVVTT 1817
Query: 304 YETFRMHSSKFSCSESCDLLICDEAHRLKNDQT-----------------LTN---RNDL 343
YE + S + LI DE HR+KN + LT +N L
Sbjct: 1818 YEYIIKDKNALS-KIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSRYRLLLTGTPLQNSL 1876
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSII-CGREPTATEEEKKLGIERSSELSAKVNQF 402
E +A++NF P I F +++ G + EEE+ L I+R L + F
Sbjct: 1877 PELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNEEEQLLIIQR---LHKVLRPF 1933
Query: 403 ILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISE-----ETKQSKI 457
+LRR + LP K+ +V+ C ++ Q+++Y+ I +K V + S K +K
Sbjct: 1934 LLRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMYD-LIKTKGVSKLASSGGADGNPKLAKG 1992
Query: 458 L--AYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWV 515
L Y+ L+K+CNHP L YD + + ++ IR+
Sbjct: 1993 LKNTYVQ-LRKICNHPYLFYDDEYNID------DNLIRY--------------------- 2024
Query: 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKR 575
+GK +L RLL L+ R+++ S TQ +++ + Y +LRLDG+T +R
Sbjct: 2025 --AGKFDLLDRLLPKLKA-AGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDER 2081
Query: 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQ 635
L+ FN P+ F+F+LS++AGG GLNL + +++FD DWNP D QA R R GQ
Sbjct: 2082 GHLLELFNAPNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQ 2141
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQEQTDSSATQGNFLSTEDLRDLFTF 694
K+ V + R ++ ++EE + R K+ L +K+IQ Q ++ + + + + L DL T
Sbjct: 2142 KQTVRVLRLVTAHSVEESILARANFKKELDKKIIQAGQFNNKSNRSD--RKKMLEDLMTQ 2199
Query: 695 HDDVRSE 701
+ E
Sbjct: 2200 DETAEME 2206
Score = 287 (106.1 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 78/242 (32%), Positives = 126/242 (52%)
Query: 511 DGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTT 570
D + +GK +L RLL L+ R+++ S TQ +++ + Y +LRLDG+T
Sbjct: 2018 DDNLIRYAGKFDLLDRLLPKLKA-AGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGST 2076
Query: 571 SISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARV 630
+R L+ FN P+ F+F+LS++AGG GLNL + +++FD DWNP D QA R
Sbjct: 2077 KSDERGHLLELFNAPNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRA 2136
Query: 631 WRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQEQTDSSATQGNFLSTEDLR 689
R GQK+ V + R ++ ++EE + R K+ L +K+IQ Q ++ + + + + L
Sbjct: 2137 HRIGQKQTVRVLRLVTAHSVEESILARANFKKELDKKIIQAGQFNNKSNRSD--RKKMLE 2194
Query: 690 DLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQS-DQEVTDIGGFAG 748
DL T D +E+ + T Q + A S E + + +K DQ+ D G G
Sbjct: 2195 DLMT--QDETAEMEKQTVPTDSQINEMIARSPEEFELYENMDKERMEIDQKKWDEAGKKG 2252
Query: 749 LA 750
A
Sbjct: 2253 EA 2254
Score = 55 (24.4 bits), Expect = 1.0e-40, Sum P(3) = 1.0e-40
Identities = 19/89 (21%), Positives = 38/89 (42%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTR 710
+++ Q+Q K Q+ IQ D + + ST+ L + H++ S C
Sbjct: 2734 QQQQQQQQQQKPQQQQAIQSPNVDKNNSTTTTTSTKLLNNSKGNHNN-NSLSPPASPCNL 2792
Query: 711 CQNYDDGAESIGEGDETNSANKNDQSDQE 739
QN + + + N+ N N+++ Q+
Sbjct: 2793 SQNNNISNNNNNINNNNNNINNNNENHQQ 2821
Score = 46 (21.3 bits), Expect = 9.0e-40, Sum P(3) = 9.0e-40
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 723 EGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEED 770
+ D+ NS N N+ D + ++ A +K K E ++D
Sbjct: 2389 DDDDNNSNNNNNNDDYDNNNVSVVATTPSRTNKRKELESNYSDEEDDD 2436
Score = 42 (19.8 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 703 HENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTD 742
+ NM+ N ++ + N+ N N+Q D D
Sbjct: 2952 NNNMNNNNNNNMNNNNNNNNNNSNNNNTNNNNQRDHSGKD 2991
Score = 41 (19.5 bits), Expect = 3.0e-39, Sum P(3) = 3.0e-39
Identities = 38/205 (18%), Positives = 75/205 (36%)
Query: 643 RFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEI 702
+ + G K R K+ L+ ++ Q++T Q + T+ + E+
Sbjct: 2173 KIIQAGQFNNKS-NRSDRKKMLEDLMTQDETAEMEKQT--VPTDSQINEMIARSPEEFEL 2229
Query: 703 HENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVT---DIGGFAGLAGCLHK-LKS 758
+ENM R + + G+ E ++ D+ +T ++G L+ L++ +K
Sbjct: 2230 YENMDKERMEIDQKKWDEAGKKGEAKRLSQEDEIPSWITKEVELGD--DLSFVLNQSIKP 2287
Query: 759 SEKQLGTPLEEDLN-----NWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIES 813
+ LE +L G + +A++ D+ ++ D ES
Sbjct: 2288 GSSKKSLDLENELQIRKILESGKIKRKTANNNAMISEFFDDDDDGSSSSSSDSDS-DFES 2346
Query: 814 KVSPKMQATEGNKNPNNHITNPKPK 838
K +PK T + N K K
Sbjct: 2347 KPTPKRTTTSDKPKSSKESNNRKEK 2371
Score = 39 (18.8 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 235 QGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCE-STRDDVVSGI 287
Q + +P +++ TPTS+ N A + V Q+IA+ ST G+
Sbjct: 1094 QQINQQPNAVPSLVTTPTSI--NTPAALVSTVVIPTQVIAVSSVSTTTPTNGGV 1145
Score = 38 (18.4 bits), Expect = 1.0e-40, Sum P(3) = 1.0e-40
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 822 TEGNKNPNNHITN 834
+ GN N NN I+N
Sbjct: 3057 SSGNNNNNNMISN 3069
Score = 38 (18.4 bits), Expect = 9.0e-40, Sum P(3) = 9.0e-40
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 828 PNNHITNPKPKL 839
PNN + P+P L
Sbjct: 2652 PNNQLPKPEPPL 2663
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 465 (168.7 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 151/526 (28%), Positives = 238/526 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EG+ ++ L N CILAD+MGLGKT+QSI LY +L G G P
Sbjct: 386 LREYQLEGLNWL------LFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIRG-PF- 437
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSL------ 297
+I+ P S ++NWE E + W V + +R + F D +
Sbjct: 438 ---LIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYR 494
Query: 298 -QVLIVSYETFRMHSSKFSCSE-SCDLLICDEAHRLKNDQT-LTNRNDLEEFFAMVNFTN 354
Q +I ++E + + E C +I DEAHRLKN L L V T
Sbjct: 495 FQAIITTFEMILGGCGELNAIEWRC--VIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTG 552
Query: 355 PGILG--DAAYFRRYYETSIICGREPTATEEEKKLGIERS-SELSAKVNQFILRRTNALL 411
+ + + ++ + E T +E L E +L A + +LRR +
Sbjct: 553 TPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDV 612
Query: 412 SNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITA---LKKLC 468
L PK ++ +LT +Q + Y + KN +S+ Q+ + + L+K C
Sbjct: 613 EKKLAPKEETIIEVELTNIQKKYYRAILE-KNFS-FLSKGAGQTNVPNLVNTMMELRKCC 670
Query: 469 NHPKLIYDTIKSGNPGTTG-FEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARL 527
NHP LI K G F D + P A ++ +GK+ ++ +L
Sbjct: 671 NHPYLI----KGAEEKILGEFRDT---YNPAASDFHLQ-------AMIQSAGKLVLIDKL 716
Query: 528 LGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSK 587
L ++ ++++ S + LD+ +RY Y R+DG + RQ ++ F+ P
Sbjct: 717 LPKMKAG-GHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDS 775
Query: 588 NEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLST 647
+ FVFLL ++AGG G+NL + ++FD DWNP ND QA AR R GQ K V +YR ++
Sbjct: 776 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTR 835
Query: 648 GTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNF--LSTEDLRDL 691
+ E +++ R K GL K + Q + + G LS +++ DL
Sbjct: 836 NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDL 881
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 469 (170.2 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 180/664 (27%), Positives = 292/664 (43%)
Query: 184 LRPHQREGVQFM-FECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPM 242
L P+Q EG+ ++ F G ILAD+MGLGKT+Q+I LY+L +G P
Sbjct: 698 LHPYQLEGLNWLRFSWAQGT-------DTILADEMGLGKTVQTIVFLYSLYKEGHSKGPY 750
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWV---------GGRVQLIALCE---STRDDVVSGIDSF 290
+ A P S + NWE E + W G + + E S D+ + G
Sbjct: 751 LVSA----PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRGGKKV 806
Query: 291 TDPCSSLQ----VLIVSYETFRMHSSKFSCSE-SCDLLICDEAHRLKNDQTLTNR--NDL 343
+Q VL+ SYE + + E +C L+ DEAHRLKN+Q+ R N
Sbjct: 807 FRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC--LVVDEAHRLKNNQSKFFRVLNSY 864
Query: 344 EEFFAMVNFTNP--GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
+ + ++ P L + + + E E ++ +L +
Sbjct: 865 KIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 924
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEET-KQSKILAY 460
+LRR A + ++P K +V +L+ +Q + Y FI ++N + S+ Q +L
Sbjct: 925 HMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQVSLLNI 983
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
+ LKK CNHP L P E P + +GS+ G + V+ SGK
Sbjct: 984 MMDLKKCCNHPYLF--------P-VAAVE------APML---PNGSYDGS--SLVKSSGK 1023
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+ +L ++L LR R+++ S T+ LDL Y Y R+DG + RQ+ ++
Sbjct: 1024 LMLLQKMLKKLRDE-GHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID 1082
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R GQ K+V
Sbjct: 1083 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM 1142
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFT---FHDD 697
IYRF++ ++EE++ Q K L ++ + S + +D+ T F DD
Sbjct: 1143 IYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDD 1202
Query: 698 VRSEIHENMHCTR----CQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCL 753
V + + T Q+ G+ + G + D D E + + + A +
Sbjct: 1203 VEGMMSQGQRPTTPIPDVQSTKGGSLAAGAKKKHGGTPPGDNKDVEDSSVIHYDDAA--I 1260
Query: 754 HKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIES 813
KL Q T + +L N + S V +++ G E +V+ +++ E
Sbjct: 1261 SKLLD-RNQDATD-DTELQNMNEYLSSFKVAQYVVREEDGVE-------EVEREVIKQEE 1311
Query: 814 KVSP 817
V P
Sbjct: 1312 NVDP 1315
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 468 (169.8 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 181/664 (27%), Positives = 292/664 (43%)
Query: 184 LRPHQREGVQFM-FECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPM 242
L P+Q EG+ ++ F G ILAD+MGLGKT+Q+I LY+L +G P
Sbjct: 632 LHPYQLEGLNWLRFSWAQGT-------DTILADEMGLGKTVQTIVFLYSLYKEGHSKGPY 684
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWV---------GGRVQLIALCE---STRDDVV-SGIDS 289
+ A P S + NWE E + W G + + E S D+ + SG
Sbjct: 685 LVSA----PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKV 740
Query: 290 FT---DPCSSLQVLIVSYETFRMHSSKFSCSE-SCDLLICDEAHRLKNDQTLTNR--NDL 343
F + VL+ SYE + + E +C L+ DEAHRLKN+Q+ R N
Sbjct: 741 FRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC--LVVDEAHRLKNNQSKFFRVLNSY 798
Query: 344 EEFFAMVNFTNP--GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
+ + ++ P L + + + E E ++ +L +
Sbjct: 799 KIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 858
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEET-KQSKILAY 460
+LRR A + ++P K +V +L+ +Q + Y FI ++N + S+ Q +L
Sbjct: 859 HMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQVSLLNI 917
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
+ LKK CNHP L P E + P +GS+ G + V+ SGK
Sbjct: 918 MMDLKKCCNHPYLF--------P-VAAVEAPV--LP-------NGSYDGS--SLVKSSGK 957
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+ +L ++L LR R+++ S T+ LDL Y Y R+DG + RQ+ ++
Sbjct: 958 LMLLQKMLKKLRDE-GHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID 1016
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R GQ K+V
Sbjct: 1017 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM 1076
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFT---FHDD 697
IYRF++ ++EE++ Q K L ++ + S + +D+ T F DD
Sbjct: 1077 IYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDD 1136
Query: 698 VRSEIHENMHCTR----CQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCL 753
V + + Q+ GA + + S D D E + + + A +
Sbjct: 1137 VEGMMSQGQRPATPIPDVQSSKGGALAASAKKKHGSTPPGDNKDVEDSSVIHYDDAA--I 1194
Query: 754 HKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIES 813
KL Q T + +L N + S V +++ G E +V+ +++ E
Sbjct: 1195 SKLLD-RNQDATD-DTELQNMNEYLSSFKVAQYVVREEDGVE-------EVEREIIKQEE 1245
Query: 814 KVSP 817
V P
Sbjct: 1246 NVDP 1249
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 464 (168.4 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 177/592 (29%), Positives = 269/592 (45%)
Query: 207 GIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265
G++G ILAD+MGLGKTLQ+IALL Y + F G MV + P S + NW E K+W
Sbjct: 181 GVNG-ILADEMGLGKTLQTIALLGYLKHYRNFPGPHMV-----LVPKSTLHNWMNEFKRW 234
Query: 266 VGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLIC 325
V L +C DV + V + SYE S F L+
Sbjct: 235 VPS---LRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFK-KFHWRYLVI 290
Query: 326 DEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYET-SIICGREP----TA 380
DEAHR+KN+ ++ L E TN +L +E +++ P +A
Sbjct: 291 DEAHRIKNE-----KSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSA 345
Query: 381 TE-----EEKK-LGIERSSE-LSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSE 433
+ + K LG ++ E L A + F+LRR + LPPK + L+ +Q E
Sbjct: 346 DDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQRE 405
Query: 434 LYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDC 491
Y + K++ ++ K K +L + L+K CNHP L +D + G P TT
Sbjct: 406 WYTKIL-MKDID-VLNSSGKMDKMRLLNILMQLRKCCNHPYL-FDGAEPGPPYTT----- 457
Query: 492 IRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL 551
D V SGKM L +LL ++++ R+++ S T+ LD+
Sbjct: 458 -------------------DEHIVSNSGKMVALDKLLARIKEQ-GSRVLIFSQMTRLLDI 497
Query: 552 FAQLCRERRYPYLRLDGTTSISKRQKLVNH------------FNDPSKNEFVFLLSSKAG 599
C R Y Y RLDG T +R+ L H FN P+ ++F+F+LS++AG
Sbjct: 498 LEDYCMWRGYEYCRLDGQTPHEERENLFLHKHNLFSTEAIEAFNAPNSSKFIFMLSTRAG 557
Query: 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659
G G+NL + ++L+D DWNP D QA R R GQKK V ++R ++ T+EE++ +R
Sbjct: 558 GLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAE 617
Query: 660 SKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAE 719
K L ++ Q Q Q N L+ E++ + +R C + D+
Sbjct: 618 IKLRLDSIVIQ-QGRLIDQQSNKLAKEEMLQM------IRHGATHVFACKESELTDEDIV 670
Query: 720 SIGEGDETNSANKNDQSDQE-VTDIGGFA-GLAGCLHKLKSS---EKQ-LGT 765
+I E E +A N++ + + + F L L+K + EKQ LGT
Sbjct: 671 TILERGEKKTAEMNERMQKMGESSLRNFRMDLEQSLYKFEGEDYREKQKLGT 722
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 299 (110.3 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 66/149 (44%), Positives = 91/149 (61%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK VL RLL L+++ DR+VL S +T LD+ + ++ Y+RLDG T IS R
Sbjct: 790 SGKFRVLERLLSDLKEK-GDRVVLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISDRIH 848
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L++ FN + FVFLLS+KAGG G+NL N ++L D D NP NDKQA R R GQ +
Sbjct: 849 LIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTR 907
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQK 666
V + + +S GTIEE + + K L++
Sbjct: 908 EVKVIKLISKGTIEESMLKMNQQKLKLEQ 936
Score = 222 (83.2 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 85/312 (27%), Positives = 139/312 (44%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q+ G+ ++ LL+ G++G ILAD+MGLGKT+Q+IA L + +G D P
Sbjct: 433 LKPYQKIGLNWL-----ALLHKHGLNG-ILADEMGLGKTIQAIAFLAHIYQEG-DRGPH- 484
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+IV P S + NW E+ W L S D D ++ V++ +
Sbjct: 485 ---LIVVPASTLDNWIREVNLWCPELNVLFYYVGSQEDRKHLRAD-ISNRVVDFNVIVTT 540
Query: 304 YETFRMHSSKFSCSESCDL--LICDEAHRLKNDQT----------------LTN---RND 342
Y S S L I DE H LKN + LT +N+
Sbjct: 541 YNCAISSSDDRSLFRKVKLNYAIFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQNN 600
Query: 343 LEEFFAMVNFTNPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +++NF P + + + RR + + E + E+E+ I + ++ +
Sbjct: 601 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKAKTAEEQSTYEKER---IAHAKQI---IKP 654
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYI 461
FILRR + LPPK + C ++ Q +LY ++ +K+ + K S + +
Sbjct: 655 FILRRVKDEVLKQLPPKKDHIELCAMSEKQEQLYCDLLNK--LKKTMKGNEKNSDMGNAM 712
Query: 462 TALKKLCNHPKL 473
L+K+ NHP L
Sbjct: 713 MQLRKMANHPLL 724
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 293 (108.2 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 67/182 (36%), Positives = 102/182 (56%)
Query: 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCR 557
E+ S + S D W +SGK +L R+L + ++ R+++ TQ +D+ R
Sbjct: 800 EVESVLNSSRLTNDLIW-RVSGKFELLDRVLPKFK-KSGHRVLMFFQMTQIMDIMEDFLR 857
Query: 558 ERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
+ YLRLDG+T +RQ ++ FN P + F FLLS++AGG GLNL + +++FD D
Sbjct: 858 WKDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTD 917
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSS 676
WNP D QA R R GQK V I R ++ ++EE + +R K + KVIQ + D+
Sbjct: 918 WNPHQDLQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGKFDNK 977
Query: 677 AT 678
+T
Sbjct: 978 ST 979
Score = 232 (86.7 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 93/330 (28%), Positives = 149/330 (45%)
Query: 174 ITVDP-LLVRF-LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
IT P +LV L+ +Q +G+++M + LN ILAD+MGLGKT+QSI+L+ T
Sbjct: 489 ITEQPTILVGGKLKEYQMKGLEWMVSLYNNHLNG------ILADEMGLGKTIQSISLV-T 541
Query: 232 LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGI--D 288
L + K K +I+ P S ++NW E +KW +V + + R + I
Sbjct: 542 YLIE----KKHENKFLIIVPLSTITNWTLEFEKWAPSIKVIVYKGSQQQRRSLQPDIRYG 597
Query: 289 SFTDPCSSLQVLIVSYETF-RMHSSKFSCSESCDLLICDEA--------HRLKNDQTLTN 339
+F ++ + +I + H S E + ++ KN LT
Sbjct: 598 NFQVLLTTYEYVIRERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTG 657
Query: 340 ---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSII-CGREPTA--TEEEKKLGIERSS 393
+N+L E +A++NF PGI F ++ T G + TEEE L I R
Sbjct: 658 TPLQNNLPELWALLNFVLPGIFNSVKSFDDWFNTPFANTGAQEKIELTEEESLLVIRR-- 715
Query: 394 ELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETK 453
L + F+LRR + LP K+ +V+ C L+ LQ LY + +
Sbjct: 716 -LHKVLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHNALFVGADVGGA 774
Query: 454 QSKILAY---ITALKKLCNHPKLIYDTIKS 480
+S I I L+K+CNHP +++ ++S
Sbjct: 775 KSGIKGLNNKIMQLRKICNHP-FVFEEVES 803
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 468 (169.8 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 181/664 (27%), Positives = 292/664 (43%)
Query: 184 LRPHQREGVQFM-FECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPM 242
L P+Q EG+ ++ F G ILAD+MGLGKT+Q+I LY+L +G P
Sbjct: 563 LHPYQLEGLNWLRFSWAQGT-------DTILADEMGLGKTVQTIVFLYSLYKEGHSKGPY 615
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWV---------GGRVQLIALCE---STRDDVV-SGIDS 289
+ A P S + NWE E + W G + + E S D+ + SG
Sbjct: 616 LVSA----PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKV 671
Query: 290 FT---DPCSSLQVLIVSYETFRMHSSKFSCSE-SCDLLICDEAHRLKNDQTLTNR--NDL 343
F + VL+ SYE + + E +C L+ DEAHRLKN+Q+ R N
Sbjct: 672 FRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC--LVVDEAHRLKNNQSKFFRVLNSY 729
Query: 344 EEFFAMVNFTNP--GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
+ + ++ P L + + + E E ++ +L +
Sbjct: 730 KIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 789
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEET-KQSKILAY 460
+LRR A + ++P K +V +L+ +Q + Y FI ++N + S+ Q +L
Sbjct: 790 HMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQVSLLNI 848
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
+ LKK CNHP L P E + P +GS+ G + V+ SGK
Sbjct: 849 MMDLKKCCNHPYLF--------P-VAAVEAPV--LP-------NGSYDGS--SLVKSSGK 888
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+ +L ++L LR R+++ S T+ LDL Y Y R+DG + RQ+ ++
Sbjct: 889 LMLLQKMLKKLRDE-GHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID 947
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R GQ K+V
Sbjct: 948 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM 1007
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFT---FHDD 697
IYRF++ ++EE++ Q K L ++ + S + +D+ T F DD
Sbjct: 1008 IYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDD 1067
Query: 698 VRSEIHENMHCTR----CQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCL 753
V + + Q+ GA + + S D D E + + + A +
Sbjct: 1068 VEGMMSQGQRPVTPIPDVQSSKGGALAASAKKKHGSTPPGDNKDVEDSSVIHYDDAA--I 1125
Query: 754 HKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIES 813
KL Q T + +L N + S V +++ G E +V+ +++ E
Sbjct: 1126 SKLLD-RNQDATD-DTELQNMNEYLSSFKVAQYVVREEDGVE-------EVEREIIKQEE 1176
Query: 814 KVSP 817
V P
Sbjct: 1177 NVDP 1180
>UNIPROTKB|E7EU19 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
IPI:IPI00916394 ProteinModelPortal:E7EU19 SMR:E7EU19 PRIDE:E7EU19
Ensembl:ENST00000296477 ArrayExpress:E7EU19 Bgee:E7EU19
Uniprot:E7EU19
Length = 1161
Score = 304 (112.1 bits), Expect = 1.5e-40, Sum P(5) = 1.5e-40
Identities = 56/107 (52%), Positives = 79/107 (73%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T +R++L+N FNDPS ++FLLS++AG G+NLIG NR+V+FD
Sbjct: 472 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDAS 531
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
WNP +D QA RV+R GQKK +IYR ++ T+E+K+Y RQ+SK+G+
Sbjct: 532 WNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGM 578
Score = 152 (58.6 bits), Expect = 1.5e-40, Sum P(5) = 1.5e-40
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L + +
Sbjct: 190 QNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLL 249
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILA 459
F+ RR + +L HLP K V+ +L+ +Q +LY F+ + S + + A
Sbjct: 250 EGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFM-DRFRDCGSSGWLGLNPLKA 308
Query: 460 YITALKKLCNHPKLIYDTIK 479
+ K + NHP ++Y+ ++
Sbjct: 309 FCVCCK-IWNHPDVLYEALQ 327
Score = 80 (33.2 bits), Expect = 1.5e-40, Sum P(5) = 1.5e-40
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 217 MGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
MGLGKTLQ I+ + L F P K + + P + + NW AE W+
Sbjct: 1 MGLGKTLQVISFIDVL----FRHTP-AKTVLAIVPVNTLQNWLAEFNMWL 45
Score = 79 (32.9 bits), Expect = 1.5e-40, Sum P(5) = 1.5e-40
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 305 ETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR 340
+ FR K C D++ICDE HR+KN Q T++
Sbjct: 136 QEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQ 171
Score = 42 (19.8 bits), Expect = 1.5e-40, Sum P(5) = 1.5e-40
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP 562
+E S KM +L L+ + D+I++ S TL L + +R P
Sbjct: 411 LENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIEEFLGKREVP 457
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 300 (110.7 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 65/161 (40%), Positives = 95/161 (59%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK ++L +LL ++++ DR+VL S +T LD+ R ++ Y+RLDG T IS+R
Sbjct: 830 SGKFNILEKLLSDIKKK-GDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIH 888
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L++ FN + F+FLLS+KAGG G+NL N ++L D D NP NDKQA R R GQ K
Sbjct: 889 LIDEFNT-DMDIFIFLLSTKAGGLGINLTSANIVILHDIDCNPYNDKQAEDRCHRVGQTK 947
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
V + + + GTIEE + + K L++ + T T
Sbjct: 948 EVKVIKLIGKGTIEESMLKISQQKLRLEQDMTTNDTGDEGT 988
Score = 221 (82.9 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 82/310 (26%), Positives = 146/310 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+P+Q+ G+ ++ LL+ ++ ILAD+MGLGKT+Q+IA L L G D P
Sbjct: 474 LKPYQKIGLNWL-----ALLHKHKVN-MILADEMGLGKTVQAIAFLAHLYVTG-DSGPH- 525
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRD----DVVSGIDSFTDPCSSLQ 298
++V P S + NW E +W + L + R D+++ + F ++
Sbjct: 526 ---LVVVPASTMDNWIREFNQWCPSMNILLYYGSQEERKHLRYDILNKVVEFNVIVTTYN 582
Query: 299 VLIVSYET---FRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR-----------NDLE 344
I S E FR F+ + +L A R ++ TL R N+L
Sbjct: 583 CAISSAEDRSLFRRLKLNFAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLL 642
Query: 345 EFFAMVNFTNPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
E +++NF P + + + +R + + E T E+E+ I + ++ + FI
Sbjct: 643 ELMSLLNFVMPHMFSSSTSEIKRLFSSKAKSTDEQTIFEKER---IAHAKQI---MKPFI 696
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITA 463
LRR + + LPPK ++ C+++ Q +LY+ ++ +K++I K S++ +
Sbjct: 697 LRRVKSEVLKQLPPKQDKIKFCQMSKKQEQLYSDLLNK--LKKSIDATEKNSELCNVMMH 754
Query: 464 LKKLCNHPKL 473
L+K+ NHP L
Sbjct: 755 LRKMANHPLL 764
Score = 37 (18.1 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 318 ESCDLLICDEAHRLKNDQTLTNRNDLEE 345
E +++ E HRL N+ T ++ LE+
Sbjct: 797 EDMEVMTDFELHRLCNEFTTLSQYKLEK 824
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 465 (168.7 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 165/530 (31%), Positives = 245/530 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 553 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 602
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 603 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 657
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 658 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 716
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 717 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 773
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 774 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 828
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL--- 517
K L N I K N F+ E FS G +TGG ++L
Sbjct: 829 -GGTKTLMN---TIMQLRKICNHPYM-FQHI-----EESFSEHLG-FTGGIVQGLDLYRA 877
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R
Sbjct: 878 SGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 936
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+
Sbjct: 937 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 996
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 997 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1046
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 313 (115.2 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 62/164 (37%), Positives = 100/164 (60%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+
Sbjct: 778 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 836
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 837 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHG 896
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
+V IYR ++ G++EE + +R K L ++ Q + T
Sbjct: 897 YLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT 940
Score = 214 (80.4 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 74/274 (27%), Positives = 133/274 (48%)
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
+ CILAD+MGLGKT+Q+I+ L L F + ++V P S +++W+ EI+ W
Sbjct: 494 NSCILADEMGLGKTIQTISFLNYL----FHEHQLYGPFLLVVPLSTLTSWQREIQTWASQ 549
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICD 326
++ L + +++ + L+ +L+ +YE + F + + D
Sbjct: 550 MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL-LKDKAFLGGLNWAFIGVD 608
Query: 327 EAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEE-EK 385
EAHRLKND +L + L +F + G + + I + ++ E+ E+
Sbjct: 609 EAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 667
Query: 386 KLGIERS---SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK 442
+ G R + L ++ F+LRR + LP K+ +++ +++ LQ + Y +I ++
Sbjct: 668 EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK-WILTR 726
Query: 443 NVKRAISEETKQSK--ILAYITALKKLCNHPKLI 474
N K A+S+ +K S L + LKK CNH LI
Sbjct: 727 NYK-ALSKGSKGSTSGFLNIMMELKKCCNHCYLI 759
Score = 37 (18.1 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 373 ICGREPTATEEEKKLGIER 391
+CG + EEE+ IER
Sbjct: 252 VCGEDVPQPEEEEFETIER 270
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 313 (115.2 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 62/164 (37%), Positives = 100/164 (60%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+
Sbjct: 778 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 836
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 837 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHG 896
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
+V IYR ++ G++EE + +R K L ++ Q + T
Sbjct: 897 YLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT 940
Score = 214 (80.4 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 74/274 (27%), Positives = 133/274 (48%)
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
+ CILAD+MGLGKT+Q+I+ L L F + ++V P S +++W+ EI+ W
Sbjct: 494 NSCILADEMGLGKTIQTISFLNYL----FHEHQLYGPFLLVVPLSTLTSWQREIQTWASQ 549
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICD 326
++ L + +++ + L+ +L+ +YE + F + + D
Sbjct: 550 MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL-LKDKAFLGGLNWAFIGVD 608
Query: 327 EAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEE-EK 385
EAHRLKND +L + L +F + G + + I + ++ E+ E+
Sbjct: 609 EAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 667
Query: 386 KLGIERS---SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK 442
+ G R + L ++ F+LRR + LP K+ +++ +++ LQ + Y +I ++
Sbjct: 668 EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK-WILTR 726
Query: 443 NVKRAISEETKQSK--ILAYITALKKLCNHPKLI 474
N K A+S+ +K S L + LKK CNH LI
Sbjct: 727 NYK-ALSKGSKGSTSGFLNIMMELKKCCNHCYLI 759
Score = 37 (18.1 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 373 ICGREPTATEEEKKLGIER 391
+CG + EEE+ IER
Sbjct: 252 VCGEDVPQPEEEEFETIER 270
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 313 (115.2 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 62/164 (37%), Positives = 100/164 (60%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+
Sbjct: 779 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 837
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 838 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHG 897
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
+V IYR ++ G++EE + +R K L ++ Q + T
Sbjct: 898 YLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT 941
Score = 214 (80.4 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 74/274 (27%), Positives = 133/274 (48%)
Query: 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG 268
+ CILAD+MGLGKT+Q+I+ L L F + ++V P S +++W+ EI+ W
Sbjct: 495 NSCILADEMGLGKTIQTISFLNYL----FHEHQLYGPFLLVVPLSTLTSWQREIQTWASQ 550
Query: 269 RVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLIVSYETFRMHSSKFSCSESCDLLICD 326
++ L + +++ + L+ +L+ +YE + F + + D
Sbjct: 551 MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL-LKDKAFLGGLNWAFIGVD 609
Query: 327 EAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEE-EK 385
EAHRLKND +L + L +F + G + + I + ++ E+ E+
Sbjct: 610 EAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 668
Query: 386 KLGIERS---SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK 442
+ G R + L ++ F+LRR + LP K+ +++ +++ LQ + Y +I ++
Sbjct: 669 EHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK-WILTR 727
Query: 443 NVKRAISEETKQSK--ILAYITALKKLCNHPKLI 474
N K A+S+ +K S L + LKK CNH LI
Sbjct: 728 NYK-ALSKGSKGSTSGFLNIMMELKKCCNHCYLI 760
Score = 37 (18.1 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 373 ICGREPTATEEEKKLGIER 391
+CG + EEE+ IER
Sbjct: 253 VCGEDVPQPEEEEFETIER 271
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 278 (102.9 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 64/175 (36%), Positives = 95/175 (54%)
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK+ LA LL L R ++ + ++ LD+ Y Y RLDGTT + +RQ +
Sbjct: 1188 GKLQTLAVLLRQL-YLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAM 1246
Query: 579 VNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
+ FN DP F F+LS+++GG G+NL G + ++ +D DWNP D QA R R GQ +
Sbjct: 1247 MERFNADPKV--FCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTR 1304
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
V IYR +S TIEE + ++ K L ++ E + T F ++ +RDLF
Sbjct: 1305 NVSIYRLISERTIEENILRKATQKRRLGELAIDE---AGFTPEFFKQSDSIRDLF 1356
Score = 253 (94.1 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 90/316 (28%), Positives = 135/316 (42%)
Query: 178 PLLVRF-LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236
P L+R LR +Q G+ +M LN ILAD+MGLGKT+Q+I+LL + C
Sbjct: 551 PFLIRGQLREYQMVGLDWMVTLYEKNLNG------ILADEMGLGKTIQTISLLAHMACSE 604
Query: 237 FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296
P +IV PTS++ NWE E KKW ++++ + ++ C
Sbjct: 605 SIWGPH----LIVVPTSVILNWEMEFKKWCPA-LKILTYFGTAKERAEKRKGWMKPNC-- 657
Query: 297 LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN------------ 339
V I SY+T F + LI DEA +KN Q L N
Sbjct: 658 FHVCITSYKTVTQDIRAFK-QRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGT 716
Query: 340 --RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
+N L E +++++F P I F+ ++ + E +G L
Sbjct: 717 PLQNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNAPLIG-----RLHK 771
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ FILRR + LP K +V C L+ Q LY+ F+ ++ K + S +
Sbjct: 772 VLRPFILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLYDDFMSRRSTKENLKSGNMMS-V 830
Query: 458 LAYITALKKLCNHPKL 473
L + L+K CNHP L
Sbjct: 831 LNIVMQLRKCCNHPNL 846
Score = 46 (21.3 bits), Expect = 8.4e-19, Sum P(2) = 8.4e-19
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVN 400
+EE AM + P + FR + T+ + + P TEE + G+ RS L +N
Sbjct: 907 IEELEAMSTYPEPRA-PEVGGFR-FNRTAFVA-KNPH-TEESEDEGVMRSRVLPKPIN 960
Score = 45 (20.9 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 497 PEMFSGRSGSWTGGDG 512
P+M S + GS+TGG G
Sbjct: 2249 PQMRSLQRGSYTGGGG 2264
Score = 43 (20.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 389 IERSSELSAKVNQFILR-RTNALLSNHLPPKIIE 421
+ER+++ A V I R N L SN PK +E
Sbjct: 199 VERAAKREAHVLARIAELRKNGLWSNSRLPKCVE 232
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 285 (105.4 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 74/225 (32%), Positives = 111/225 (49%)
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK+ VL RLL L R+++ + T+ LD+ Q + YLRLDG T I +RQ L
Sbjct: 991 GKLQVLDRLLKDLVSN-GHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQIL 1049
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
FN+ K VF+LS+++GG G+NL G + ++ +D DWNP D QA R R GQ +
Sbjct: 1050 TERFNNDDKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRD 1108
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDV 698
V IYR +S T+E + +R K L K++ Q T+ + D+ DLF D+
Sbjct: 1109 VHIYRLISEYTVESNMLRRANQKRMLDKIVIQG--GEFTTE--WFRKADVLDLFDLDDES 1164
Query: 699 RSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDI 743
++ + D G+ E E A D+ D + +
Sbjct: 1165 LKKVKADS--------DSGSTKNEENWEVALAAAEDEEDVQAAQV 1201
Score = 239 (89.2 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 97/340 (28%), Positives = 162/340 (47%)
Query: 162 EEPQNDGGNLVPIT-VDPLLVRFL-RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGL 219
E+ + D N P+ + + V FL R RE Q+ E ++ L + + +G ILAD+MGL
Sbjct: 419 EQRKFDEPNGSPVLHANKIQVPFLFRGTLREYQQYGLEWLTAL-HDSNTNG-ILADEMGL 476
Query: 220 GKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCES 278
GKT+Q+IALL L C+ + P +I+ PTS++ NWE E KK++ G ++
Sbjct: 477 GKTIQTIALLAHLACEKENWGPH----LIIVPTSVMLNWEMEFKKFLPGFKILTYYGNPQ 532
Query: 279 TRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND---- 334
R + SG + P + V I SY+ F + +I DEAH +KN
Sbjct: 533 ERKEKRSG---WYKP-DTWHVCITSYQLVLQDHQPFR-RKKWQYMILDEAHNIKNFRSQR 587
Query: 335 -QTLTN--------------RNDLEEFFAMVNFTNP-GILGDAAYFRRYYETSIICGRE- 377
Q+L N +N+L E ++++ F P G+ + + F + +
Sbjct: 588 WQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLMPAGVTQNNSAFANLKDFQDWFSKPM 647
Query: 378 PTATEEEKKLGIERSSELSAKVNQ----FILRRTNALLSNHLPPKIIEVVCCKLTPLQSE 433
EE + + E + + AK+++ ++LRR + +P K VV C+L+ Q
Sbjct: 648 DRLIEEGQDMNPEAMNTV-AKLHRVLRPYLLRRLKTEVEKQMPAKYEHVVYCQLSKRQRF 706
Query: 434 LYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKL 473
LY+ FI+ + ++ S I+ + L+K+CNHP L
Sbjct: 707 LYDDFINRARTREILASGNFMS-IINCLMQLRKVCNHPNL 745
Score = 52 (23.4 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFL 683
+ K+YQ Q+ K QK + + + S G+ L
Sbjct: 847 QNKIYQEQLDKLNFQKYLNESKCSHSPIYGSNL 879
Score = 41 (19.5 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 432 SELYNHFIHSKNVKRAISEETKQSKILAYITALKK 466
S LYN + SK +R + + K +A I+ +K
Sbjct: 388 SLLYNEDVASKKKRRVNDDGLARKKSIAGISEQRK 422
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 266 (98.7 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 66/173 (38%), Positives = 94/173 (54%)
Query: 497 PEMFSG-RSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G + GD +E SGK+H+L +LL L + R++L S TQ LD+
Sbjct: 327 PYLFDGVEPEPFEIGDHL-IEASGKLHLLDKLLAFLYSK-GHRVLLFSQMTQMLDILQDY 384
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
R Y Y R+DG+ +R + +F + F FL S++AGG G+NL + ++ FD
Sbjct: 385 LDYRGYSYERVDGSVRGEERHLAIKNFGQ--QPIFTFL-STRAGGVGMNLTAADTVIFFD 441
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
D+NP ND QAAAR R GQ K V + R + T+EE VY++ SK L I
Sbjct: 442 SDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTI 494
Score = 254 (94.5 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 86/305 (28%), Positives = 152/305 (49%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LRP+Q +GV ++ +C +GCIL D+MGLGKT Q+IAL L + D P
Sbjct: 48 LRPYQLQGVNWLAQCFHCQ------NGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPF- 100
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+I+ P S++SNW+ E++++ G L + + D + + S VL+ +
Sbjct: 101 ---LILCPLSVLSNWKEEMERFAPG---LSCVTYAGDKDKRACLQQDLKQESRFHVLLTT 154
Query: 304 YETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEF---FAMVNFTNP--GIL 358
YE + + F S +L+ DEAHRLKN +L ++ L EF F+++ P L
Sbjct: 155 YEIC-LKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKT-LSEFSVVFSLLLTGTPIQNSL 212
Query: 359 GDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ----FILRRTNALLSNH 414
+ + E + +E ++ IE+ SE ++++ + F+LRR A ++
Sbjct: 213 QELYSLLSFVEPDLF-SKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATE 271
Query: 415 LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLI 474
LP K V+ ++ LQ + Y + K++ +E K+ K+ ++ L+K +HP L
Sbjct: 272 LPRKTEVVIYHGMSALQKKYYKAIL-MKDLDAFENEMAKKVKLQNVLSQLRKCVDHPYL- 329
Query: 475 YDTIK 479
+D ++
Sbjct: 330 FDGVE 334
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 332 (121.9 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 66/164 (40%), Positives = 102/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + YP+ RLDG+
Sbjct: 789 IRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 847
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 848 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 907
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ GT+EE++ +R K L ++ Q + T
Sbjct: 908 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 951
Score = 187 (70.9 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 81/301 (26%), Positives = 136/301 (45%)
Query: 184 LRPHQREGVQFMFE--CVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKP 241
LR +Q EG+ ++ C S + ILAD+MGLGKT+Q+I+ L L F
Sbjct: 486 LRDYQLEGLNWLAHSWCKS--------NSVILADEMGLGKTIQTISFLSYL----FHQHQ 533
Query: 242 MVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ--V 299
+ +IV P S +++W+ E + W ++ + + + + + L+
Sbjct: 534 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 593
Query: 300 LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILG 359
LI +YE + S + L DEAHRLKND +L + L +F + G
Sbjct: 594 LITTYEILLKDKTVLG-SINWAFLGVDEAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPL 651
Query: 360 DAAYFRRYYETSIICGREPTATE---EEKKLGIERSSELSAKVNQ-FILRRTNALLSNHL 415
+ + I + E E+ G E + KV + F+LRR + L
Sbjct: 652 QNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSL 711
Query: 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPKL 473
P K+ +++ +++ LQ + Y +I ++N K A+++ T+ S L + LKK CNH L
Sbjct: 712 PAKVEQILRVEMSALQKQYYK-WILTRNYK-ALAKGTRGSTSGFLNIVMELKKCCNHCYL 769
Query: 474 I 474
I
Sbjct: 770 I 770
>MGI|MGI:103067 [details] [associations]
symbol:Atrx "alpha thalassemia/mental retardation syndrome
X-linked homolog (human)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IDA] [GO:0000792 "heterochromatin" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0070087 "chromo shadow domain
binding" evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 MGI:MGI:103067 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10779
GeneTree:ENSGT00550000074619 CTD:546 HOVERGEN:HBG000104
OrthoDB:EOG4PVNXQ InterPro:IPR025766 PROSITE:PS51533 EMBL:AF026032
EMBL:AL671893 EMBL:AL670660 EMBL:X99643 IPI:IPI00322707
RefSeq:NP_033556.2 UniGene:Mm.10141 ProteinModelPortal:Q61687
SMR:Q61687 IntAct:Q61687 STRING:Q61687 PhosphoSite:Q61687
PaxDb:Q61687 PRIDE:Q61687 Ensembl:ENSMUST00000113573 GeneID:22589
KEGG:mmu:22589 HOGENOM:HOG000231302 InParanoid:A2ADH4
NextBio:302925 Bgee:Q61687 Genevestigator:Q61687
GermOnline:ENSMUSG00000031229 GO:GO:0000792 GO:GO:0000228
Uniprot:Q61687
Length = 2476
Score = 299 (110.3 bits), Expect = 2.2e-40, Sum P(4) = 2.2e-40
Identities = 58/142 (40%), Positives = 91/142 (64%)
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
R Y RLDG+T+ R+K FND + +F++S+KAG G+NL+ NR+++FD
Sbjct: 2062 RNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDAS 2121
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSS 676
WNP+ D Q+ RV+R GQ K V++YRFL+ GT+E+K+Y RQ++K+ L +V+ Q+Q +
Sbjct: 2122 WNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERH 2181
Query: 677 ATQGNFLSTEDLRDLFTFHDDV 698
T +L +L+TF D+
Sbjct: 2182 FTMN------ELTELYTFEPDL 2197
Score = 178 (67.7 bits), Expect = 2.2e-40, Sum P(4) = 2.2e-40
Identities = 66/214 (30%), Positives = 101/214 (47%)
Query: 151 PGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFEC----VSGLLNAA 206
P LVL + EE + LV + + ++++ L+PHQ +GVQFM++C V +
Sbjct: 1517 PITTKLVLDENEETKEP---LVQVHRN-MVIK-LKPHQVDGVQFMWDCCCESVEKTKKSP 1571
Query: 207 GIHGCILADDMGLGKTLQSIALLYT-LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265
G GCILA MGLGKTLQ ++ L+T LLC D A++V P + NW E +KW
Sbjct: 1572 G-SGCILAHCMGLGKTLQVVSFLHTVLLCDKLD----FSTALVVCPLNTALNWMNEFEKW 1626
Query: 266 VGG-----RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFR-------MHSSK 313
G ++++ L R S + V+I+ YE +R + S K
Sbjct: 1627 QEGLNDNEKLEVSELATVKRPQERSYMLQRWQEDGG--VMIIGYEMYRNLAQGRNVKSRK 1684
Query: 314 FS-------CSESCDLLICDEAHRLKNDQTLTNR 340
D ++CDE H LKN+ + ++
Sbjct: 1685 LKDIFNKALVDPGPDFVVCDEGHILKNEASAVSK 1718
Score = 116 (45.9 bits), Expect = 2.2e-40, Sum P(4) = 2.2e-40
Identities = 37/149 (24%), Positives = 68/149 (45%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N+L E+ MVNF +LG FR + I G+ +T + ++ +R+ L +
Sbjct: 1737 QNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEML 1796
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI-HSKNVKRAISEETKQS--K 456
+ R+ L+ LPPK V+ ++T +Q +LY +++ H V + ++ K
Sbjct: 1797 AGCVQRKDYTALTKFLPPKHEYVLAVRMTAIQCKLYQYYLDHLTGVGNSTEGGRGKAGAK 1856
Query: 457 ILAYITALKKLCNHPKLIY-DTIKSGNPG 484
+ L ++ HP + D I N G
Sbjct: 1857 LFQDFQMLSRIWTHPWCLQLDYISKENKG 1885
Score = 38 (18.4 bits), Expect = 2.2e-40, Sum P(4) = 2.2e-40
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 69 RQSLLPRVLSVTEGAAVCRKPFKP 92
R LL L++++G + KP KP
Sbjct: 1324 RHRLLRHKLTLSDGESGEEKPTKP 1347
Score = 38 (18.4 bits), Expect = 5.8e-27, Sum P(3) = 5.8e-27
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 316 CSESCDLLICDEAH 329
C+E +L+ CD H
Sbjct: 222 CAEGGNLICCDFCH 235
>ZFIN|ZDB-GENE-110411-274 [details] [associations]
symbol:si:ch211-248d20.2 "si:ch211-248d20.2"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-110411-274
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:CR376747 IPI:IPI00994578 RefSeq:XP_689596.5 UniGene:Dr.83737
Ensembl:ENSDART00000122774 Ensembl:ENSDART00000125173 GeneID:553504
KEGG:dre:553504 NextBio:20880249 Uniprot:F1QJP0
Length = 1269
Score = 344 (126.2 bits), Expect = 2.2e-40, Sum P(4) = 2.2e-40
Identities = 96/250 (38%), Positives = 131/250 (52%)
Query: 459 AYITALKKLCNHPKLIYD---TIKSGNPG-TTGFEDCIRFFPPEMFSGRSGSWTG-GDGA 513
+Y+ L+K+ NH L+ T K TT E R FP + ++ D
Sbjct: 380 SYLAILRKVANHVALLQSKDGTSKKQEKYVTTICEQVFRKFPDFTERCKQAAFEAMSDPM 439
Query: 514 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSIS 573
+ SGKM V+ +LL H + D +++L S T+ LD+ C Y RLDG T
Sbjct: 440 Y---SGKMKVMQKLLNHFIAKKD-KVLLFSLSTKLLDVLESYCMAEGLEYHRLDGNTKSK 495
Query: 574 KRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRD 633
R K+V FN S++ + L+S+ AGG GLN IG N +VLFDP WNPAND QA RV+R
Sbjct: 496 DRVKIVKEFNS-SRDVNLCLVSTLAGGLGLNFIGANVVVLFDPTWNPANDLQAIDRVYRI 554
Query: 634 GQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK-VIQQEQTDS--SATQGNFLSTEDL-- 688
GQ + V ++R +S GT+EE +Y RQ+ K+ LQ VI QE A QG +L
Sbjct: 555 GQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVIGQENARRYFEAVQGTDGYAGELFG 614
Query: 689 -RDLFTFHDD 697
R+LF D
Sbjct: 615 IRNLFRLQTD 624
Score = 173 (66.0 bits), Expect = 2.2e-40, Sum P(4) = 2.2e-40
Identities = 59/227 (25%), Positives = 104/227 (45%)
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLI--------------ALCE---STRDDVVSG 286
K +IV P S++ NW+ E+ W RV ++ CE +T + +
Sbjct: 131 KVFVIVAPLSVLYNWKDELDTWGHFRVVVVHGVRKDEELARVQRGRCEIALTTYETLRLC 190
Query: 287 IDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEF 346
+D F + V++ + H SK + ++ + C R+ T+ +N+LEE
Sbjct: 191 LDQFNS-INWAAVIVDEAHKIKNHKSKIT--QAVKQMRCKV--RIGLTGTIL-QNNLEEL 244
Query: 347 FAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRR 406
+ ++N+ P LG F+ + I G++ T T+ G + EL+ K++++ LRR
Sbjct: 245 WCVMNWAVPRCLGSLGAFKNRFSDPIEKGQKHTVTKRALAEGRKAVQELAKKLSRWFLRR 304
Query: 407 TNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETK 453
T +L+S+ LP K VV C LT Q +Y + S +V + K
Sbjct: 305 TKSLISDQLPKKDDRVVYCSLTDFQRTVYRAVLDSDDVTLMLQSSGK 351
Score = 146 (56.5 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 60/220 (27%), Positives = 102/220 (46%)
Query: 131 RLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQRE 190
R LP + + + PPG L + + VP T++ R+LR +QRE
Sbjct: 17 RTPLPHFEDEKPLFHSNQTPPGPSEAFLLAGSDVK------VPYTIN----RYLRDYQRE 66
Query: 191 GVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250
G++F+++ N A GCIL DDMGLGKT+Q I L +L + K +
Sbjct: 67 GIKFIYQ------NYAKSRGCILGDDMGLGKTVQVIGFLAAVLQKTGTWKDVENNR---- 116
Query: 251 PTSLVSNWEAEIKKWVGGRVQLIALCESTRDD----------VVSGIDSFTDPC----SS 296
P L+S +E + V V +++ + +D+ VV G+ +
Sbjct: 117 PQFLLSQKPSERVQKVFVIVAPLSVLYNWKDELDTWGHFRVVVVHGVRKDEELARVQRGR 176
Query: 297 LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT 336
++ + +YET R+ +F+ S + +I DEAH++KN ++
Sbjct: 177 CEIALTTYETLRLCLDQFN-SINWAAVIVDEAHKIKNHKS 215
Score = 52 (23.4 bits), Expect = 2.2e-40, Sum P(4) = 2.2e-40
Identities = 31/137 (22%), Positives = 58/137 (42%)
Query: 685 TEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIG 744
+ED + F++ DD + + C + + D +S + T+ K D+ T G
Sbjct: 812 SEDEIEHFSWSDD--EGFLKAVRCVK-EKESDHRQSSRRENTTSGFKKGQSRDEGYT--G 866
Query: 745 GFAGLAGCLHKL---KSSEKQLGTPLEED-LNN------WGHHFYSMSVPDAILQASAGD 794
L G L ++ S++K +G+ ED L+ + H +S + IL S +
Sbjct: 867 TLDSLLGGLQQVGYTHSNQKVVGSSRAEDRLSRAAVREVFELHKHSQLPANQILNVSETE 926
Query: 795 EVTFVFTNQVDGKLVPI 811
+ T+ V+G P+
Sbjct: 927 SSDPILTDHVNGGQTPM 943
Score = 46 (21.3 bits), Expect = 9.1e-40, Sum P(4) = 9.1e-40
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 726 ETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGH 776
ET+S + S+ T IG GL L K + +Q T EED ++ H
Sbjct: 704 ETHSGEQMVASN---TCIGN-TGLCNLLQKQMTEIRQRDTDTEEDSSSESH 750
Score = 44 (20.5 bits), Expect = 2.2e-40, Sum P(4) = 2.2e-40
Identities = 16/80 (20%), Positives = 28/80 (35%)
Query: 822 TEGNKNPNNHITNPKPKLDQRXXXXXXXXXXXXDVPSLENSAKFSLSASSQPKSMRTSLK 881
T +PN+ + P P+ + R + ++ L+ + KS
Sbjct: 1056 TSKRAHPNSSVEVPTPEAEDRRKTSKKKKTSETEASKIDLHCSTDLTKTKMKKSSTD--- 1112
Query: 882 GAIKPKLSFGNQLPLKRFSP 901
I P S GN +P +P
Sbjct: 1113 --ISPSSSSGN-IPQINCAP 1129
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 426 KLTPLQSELYNHFIHSKNVKRAISEETKQSKIL-AYITA 463
K+ +Q +L NHFI K+ S TK +L +Y A
Sbjct: 443 KMKVMQ-KLLNHFIAKKDKVLLFSLSTKLLDVLESYCMA 480
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 460 (167.0 bits), Expect = 2.3e-40, P = 2.3e-40
Identities = 155/533 (29%), Positives = 245/533 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N CILAD+MGLGKT+QSIA L + G G P
Sbjct: 37 LREYQLEGVNWL------LFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHG-PF- 88
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIV- 302
+++ P S ++NWE E W + I S + I + C + ++
Sbjct: 89 ---LVIAPLSTITNWEREFNTWT--EMNTIVYHGSLASRQM--IQQYEMYCKDSRGRLIP 141
Query: 303 -SYE------TFRMHSSKFSCSESCDL----LICDEAHRLKND--QTLTNRN--DLEEFF 347
+Y+ TF M S C E ++ +I DEAHRLKN + L + DLE
Sbjct: 142 GAYKFDALITTFEMILS--DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKV 199
Query: 348 AMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE----LSAKVNQFI 403
+ + + + E S + P+ +E K G ++ E L A + +
Sbjct: 200 LLTGTPLQNTVEELFSLLHFLEPS----QFPSESEFLKDFGDLKTEEQVQKLQAILKPMM 255
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISE---ETKQSKILAY 460
LRR + +L PK ++ +LT +Q + Y + KN +S+ T +L
Sbjct: 256 LRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILE-KNFS-FLSKGAGHTNMPNLLNT 313
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
+ L+K CNHP LI + T F + P + A V +GK
Sbjct: 314 MMELRKCCNHPYLINGAEEKI---LTEFREACHIIPHDFHLQ----------AMVRSAGK 360
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+ ++ +LL L+ ++++ S + LD+ +RRY Y R+DG + RQ ++
Sbjct: 361 LVLIDKLLPKLKAG-GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAID 419
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
F+ P + FVFLL ++AGG G+NL + ++FD DWNP ND QA AR R GQ K V
Sbjct: 420 RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVK 479
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQT--DSSATQGNFLSTEDLRDL 691
+YR ++ + E +++ + K GL K + Q + D + T S +++ DL
Sbjct: 480 VYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 532
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 462 (167.7 bits), Expect = 2.4e-40, P = 2.4e-40
Identities = 180/664 (27%), Positives = 291/664 (43%)
Query: 184 LRPHQREGVQFM-FECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPM 242
L P+Q EG+ ++ F G ILAD+MGLGKT+Q+I LY+L +G P
Sbjct: 83 LHPYQLEGLNWLRFSWAQGT-------DTILADEMGLGKTVQTIVFLYSLYKEGHSKGPY 135
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWV---------GGRVQLIALCE---STRDDVV-SGIDS 289
+ A P S + NWE E + W G + + E S D+ + SG
Sbjct: 136 LVSA----PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKV 191
Query: 290 FT---DPCSSLQVLIVSYETFRMHSSKFSCSE-SCDLLICDEAHRLKNDQTLTNR--NDL 343
F + VL+ SYE + + E +C L+ DEAHRLKN+Q+ R N
Sbjct: 192 FRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC--LVVDEAHRLKNNQSKFFRVLNSY 249
Query: 344 EEFFAMVNFTNP--GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
+ + ++ P L + + + E E ++ +L +
Sbjct: 250 KIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 309
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEET-KQSKILAY 460
+LRR A + ++P K +V +L+ +Q + Y FI ++N + S+ Q +L
Sbjct: 310 HMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQVSLLNI 368
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
+ LKK CNHP L P E + P +GS+ G + V+ SGK
Sbjct: 369 MMDLKKCCNHPYLF--------P-VAAVEAPV--LP-------NGSYDGS--SLVKSSGK 408
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+ +L ++L LR R+++ S T+ LDL Y Y R+DG + RQ+ ++
Sbjct: 409 LMLLQKMLKKLRDE-GHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID 467
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R GQ K+V
Sbjct: 468 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM 527
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFT---FHDD 697
IYRF++ ++EE++ Q K L ++ + S + +D+ T F DD
Sbjct: 528 IYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDD 587
Query: 698 VRSEIHENMHCTR----CQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCL 753
V + + Q+ G + + S D D E + + + A +
Sbjct: 588 VEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAA--I 645
Query: 754 HKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIES 813
KL Q T + +L N + S V +++ G E +V+ +++ E
Sbjct: 646 SKLLD-RNQDATD-DTELQNMNEYLSSFKVAQYVVREEDGVE-------EVEREIIKQEE 696
Query: 814 KVSP 817
V P
Sbjct: 697 NVDP 700
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 465 (168.7 bits), Expect = 2.5e-40, P = 2.5e-40
Identities = 165/530 (31%), Positives = 245/530 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 746 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 795
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 796 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 850
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 851 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 909
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 910 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 966
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 967 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 1021
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL--- 517
K L N I K N F+ E FS G +TGG ++L
Sbjct: 1022 -GGTKTLMN---TIMQLRKICNHPYM-FQHI-----EESFSEHLG-FTGGIVQGLDLYRA 1070
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R
Sbjct: 1071 SGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1129
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+
Sbjct: 1130 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1189
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1190 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1239
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 465 (168.7 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 165/530 (31%), Positives = 245/530 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 803
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 858
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 859 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 974
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 1029
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL--- 517
K L N I K N F+ E FS G +TGG ++L
Sbjct: 1030 -GGTKTLMN---TIMQLRKICNHPYM-FQHI-----EESFSEHLG-FTGGIVQGLDLYRA 1078
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R
Sbjct: 1079 SGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1247
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 465 (168.7 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 165/530 (31%), Positives = 245/530 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 803
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 858
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 859 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 974
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 1029
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL--- 517
K L N I K N F+ E FS G +TGG ++L
Sbjct: 1030 -GGTKTLMN---TIMQLRKICNHPYM-FQHI-----EESFSEHLG-FTGGIVQGLDLYRA 1078
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R
Sbjct: 1079 SGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1247
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 465 (168.7 bits), Expect = 3.0e-40, P = 3.0e-40
Identities = 166/566 (29%), Positives = 259/566 (45%)
Query: 184 LRPHQREGVQFM-FECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLC-QGFDGKP 241
L P+Q EG+ ++ F G ILAD+MGLGKT+Q+I LY+L QG P
Sbjct: 631 LHPYQLEGLNWLRFSWAQGT-------DTILADEMGLGKTVQTIVFLYSLYKEQGHSKGP 683
Query: 242 MVKKAIIVTPTSLVSNWEAEIKKWV---------GGRVQLIALCE---STRDDVV-SGID 288
+ A P S + NWE E + W G + + E S D+ + SG
Sbjct: 684 YLVSA----PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKK 739
Query: 289 SFT---DPCSSLQVLIVSYETFRMHSSKFSCSE-SCDLLICDEAHRLKNDQTLTNR--ND 342
F + VL+ SYE + + E +C L+ DEAHRLKN+Q+ R N
Sbjct: 740 VFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWAC--LVVDEAHRLKNNQSKFFRVLNS 797
Query: 343 LEEFFAMVNFTNP--GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVN 400
+ + ++ P L + + + E E ++ +L +
Sbjct: 798 YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLG 857
Query: 401 QFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEET-KQSKILA 459
+LRR A + ++P K +V +L+ +Q + Y FI ++N + S+ Q +L
Sbjct: 858 PHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQVSLLN 916
Query: 460 YITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSG 519
+ LKK CNHP L P E + P +GS+ G + V+ SG
Sbjct: 917 IMMDLKKCCNHPYLF--------P-VAAVEAPV--LP-------NGSYDGN--SLVKSSG 956
Query: 520 KMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLV 579
K+ +L ++L LR R+++ S T+ LDL Y Y R+DG + RQ+ +
Sbjct: 957 KLMLLQKMLKKLRDG-GHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAI 1015
Query: 580 NHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRV 639
+ FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R GQ K+V
Sbjct: 1016 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV 1075
Query: 640 FIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFT---FHD 696
IYRF++ ++EE++ Q K L ++ + S + +D+ T F D
Sbjct: 1076 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKD 1135
Query: 697 DVRSEIHENMHCTRCQ--NYDDGAES 720
DV + +N +YDD A S
Sbjct: 1136 DVEGGVSDNKDVDDSSVIHYDDAAIS 1161
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 332 (121.9 bits), Expect = 3.1e-40, Sum P(2) = 3.1e-40
Identities = 66/164 (40%), Positives = 102/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + YP+ RLDG+
Sbjct: 787 IRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 905
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ GT+EE++ +R K L ++ Q + T
Sbjct: 906 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 949
Score = 189 (71.6 bits), Expect = 3.1e-40, Sum P(2) = 3.1e-40
Identities = 81/302 (26%), Positives = 136/302 (45%)
Query: 184 LRPHQREGVQFMFE--CVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKP 241
LR +Q EG+ ++ C S + ILAD+MGLGKT+Q+I+ L L F
Sbjct: 484 LRDYQLEGLNWLAHSWCKS--------NSVILADEMGLGKTIQTISFLSYL----FHQHQ 531
Query: 242 MVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ--V 299
+ +IV P S +++W+ E + W ++ + + + + + L+
Sbjct: 532 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 591
Query: 300 LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRN--DLEEFFAMVNFTNP-- 355
LI +YE + S + L DEAHRLKND +L + D + ++ P
Sbjct: 592 LITTYEILLKDKTVLG-SINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQ 650
Query: 356 GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ-FILRRTNALLSNH 414
L + + E EE+ G E + KV + F+LRR +
Sbjct: 651 NSLKELWSLLHFIMPEKFEFWEDF--EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS 708
Query: 415 LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPK 472
LP K+ +++ +++ LQ + Y +I ++N K A+++ T+ S L + LKK CNH
Sbjct: 709 LPAKVEQILRVEMSALQKQYYK-WILTRNYK-ALAKGTRGSTSGFLNIVMELKKCCNHCY 766
Query: 473 LI 474
LI
Sbjct: 767 LI 768
Score = 41 (19.5 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 376 REPTATEEEKKLGIERSSELS-AKVNQFILRRT 407
REP+ E+E+ E +E K + + RRT
Sbjct: 153 REPSEDEQEQGTSAESEAEQKKVKARRPVPRRT 185
Score = 37 (18.1 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 54 SKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQL 105
++N AL +G L V+ + + C KPP N +NG + L
Sbjct: 734 TRNYKALAKGTRG-STSGFLNIVMELKKCCNHCYL-IKPPEENERENGQEVL 783
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 332 (121.9 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 66/164 (40%), Positives = 102/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + YP+ RLDG+
Sbjct: 776 IRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 834
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 835 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 894
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ GT+EE++ +R K L ++ Q + T
Sbjct: 895 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 938
Score = 191 (72.3 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 80/299 (26%), Positives = 135/299 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EG+ ++ N+ ILAD+MGLGKT+Q+I+ L L F +
Sbjct: 472 LRDYQLEGLNWLAHSWCNRSNSV-----ILADEMGLGKTIQTISFLSYL----FHQHQLY 522
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLI 301
+IV P S +++W+ E + W ++ + + + + + L+ LI
Sbjct: 523 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 582
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDA 361
+YE + S + L DEAHRLKND +L + L +F + G
Sbjct: 583 TTYEILLKDKTVLG-SINWAFLGVDEAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPLQN 640
Query: 362 AYFRRYYETSIICGREPTATE---EEKKLGIERSSELSAKVNQ-FILRRTNALLSNHLPP 417
+ + I + E E+ G E + KV + F+LRR + LP
Sbjct: 641 SLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPA 700
Query: 418 KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPKLI 474
K+ +++ +++ LQ + Y +I ++N K A+++ T+ S L + LKK CNH LI
Sbjct: 701 KVEQILRVEMSALQKQYYK-WILTRNYK-ALAKGTRGSTSGFLNIVMELKKCCNHCYLI 757
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 474 (171.9 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 163/527 (30%), Positives = 241/527 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 706 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRLN 755
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R +V + S VL+
Sbjct: 756 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS-----GKFNVLLT 810
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 811 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 869
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 870 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRP 926
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + SE+ K+ K
Sbjct: 927 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGK---- 981
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
K L N I K N F+ F + G S G + SGK
Sbjct: 982 -GGAKTLMN---TIMQLRKICNHPYM-FQHIEESFAEHL--GYSNGVINGAELY-RASGK 1033
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L R+L LR T+ R++L T + + R + YLRLDGTT R L+
Sbjct: 1034 FELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLK 1092
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN+P F+FLLS++AGG GLNL + +V+FD DWNP D QA R R GQ+ V
Sbjct: 1093 KFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1152
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
+ R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1153 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1199
Score = 41 (19.5 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 18/101 (17%), Positives = 42/101 (41%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTR 710
E+ + + + K QK+ ++E+++ + + ED + + V+ +I N +
Sbjct: 1454 EDSIVLQSVFKSARQKIAKEEESEDESNEEE--EEEDEEESESEAKSVKVKIKLNKKDEK 1511
Query: 711 CQNYDDGAESIGEG---------DETNSANKNDQSDQEVTD 742
++ G + G D ++N+QS+ TD
Sbjct: 1512 GRDKGKGKKRPNRGKAKPVVSDFDSDEEQDENEQSEASGTD 1552
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 474 (171.9 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 163/527 (30%), Positives = 241/527 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 708 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRLN 757
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R +V + S VL+
Sbjct: 758 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS-----GKFNVLLT 812
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 813 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 871
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 872 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRP 928
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + SE+ K+ K
Sbjct: 929 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGK---- 983
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
K L N I K N F+ F + G S G + SGK
Sbjct: 984 -GGAKTLMN---TIMQLRKICNHPYM-FQHIEESFAEHL--GYSNGVINGAELY-RASGK 1035
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L R+L LR T+ R++L T + + R + YLRLDGTT R L+
Sbjct: 1036 FELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLK 1094
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN+P F+FLLS++AGG GLNL + +V+FD DWNP D QA R R GQ+ V
Sbjct: 1095 KFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1154
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
+ R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1155 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1201
Score = 41 (19.5 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 18/101 (17%), Positives = 42/101 (41%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTR 710
E+ + + + K QK+ ++E+++ + + ED + + V+ +I N +
Sbjct: 1456 EDSIVLQSVFKSARQKIAKEEESEDESNEEE--EEEDEEESESEAKSVKVKIKLNKKDEK 1513
Query: 711 CQNYDDGAESIGEG---------DETNSANKNDQSDQEVTD 742
++ G + G D ++N+QS+ TD
Sbjct: 1514 GRDKGKGKKRPNRGKAKPVVSDFDSDEEQDENEQSEASGTD 1554
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 474 (171.9 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 163/527 (30%), Positives = 241/527 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 708 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRLN 757
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R +V + S VL+
Sbjct: 758 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS-----GKFNVLLT 812
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 813 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 871
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 872 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRP 928
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + SE+ K+ K
Sbjct: 929 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGK---- 983
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
K L N I K N F+ F + G S G + SGK
Sbjct: 984 -GGAKTLMN---TIMQLRKICNHPYM-FQHIEESFAEHL--GYSNGVINGAELY-RASGK 1035
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L R+L LR T+ R++L T + + R + YLRLDGTT R L+
Sbjct: 1036 FELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLK 1094
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN+P F+FLLS++AGG GLNL + +V+FD DWNP D QA R R GQ+ V
Sbjct: 1095 KFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1154
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
+ R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1155 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1201
Score = 41 (19.5 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 18/101 (17%), Positives = 42/101 (41%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTR 710
E+ + + + K QK+ ++E+++ + + ED + + V+ +I N +
Sbjct: 1456 EDSIVLQSVFKSARQKIAKEEESEDESNEEE--EEEDEEESESEAKSVKVKIKLNKKDEK 1513
Query: 711 CQNYDDGAESIGEG---------DETNSANKNDQSDQEVTD 742
++ G + G D ++N+QS+ TD
Sbjct: 1514 GRDKGKGKKRPNRGKAKPVVSDFDSDEEQDENEQSEASGTD 1554
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 465 (168.7 bits), Expect = 3.6e-40, P = 3.6e-40
Identities = 162/562 (28%), Positives = 264/562 (46%)
Query: 162 EEPQNDGGNLVPITVDPLLVRFLRPH---QREGVQFMFECVSGL--LNAAGIHGC--ILA 214
+E Q DG P T DP + +P G M++ + GL L + G ILA
Sbjct: 699 KELQGDGPPSSP-TNDPTVKYETQPRFITATGGTLHMYQ-LEGLNWLRFSWAQGTDTILA 756
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV-------- 266
D+MGLGKT+Q+I LY+L +G P + A P S + NWE E + W
Sbjct: 757 DEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA----PLSTIINWEREFQMWAPKFYVVTY 812
Query: 267 -GGRVQLIALCE---STRDDVVSG-IDSFT---DPCSSLQVLIVSYETFRMHSSKF-SCS 317
G + + E S D+ + G +F + VL+ SYE + + S
Sbjct: 813 TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 872
Query: 318 ESCDLLICDEAHRLKNDQT----LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSII 373
+C L+ DEAHRLKN+Q+ + N ++ + L + + +
Sbjct: 873 WAC--LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 930
Query: 374 CGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSE 433
E E ++ +L + +LRR A + ++P K +V +L+P+Q +
Sbjct: 931 NNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKK 990
Query: 434 LYNHFIHSKNVKRAISEET-KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492
Y + + ++N + S Q +L + LKK CNHP L P E
Sbjct: 991 YYKYIL-TRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLF--------P-VAAMES-- 1038
Query: 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLF 552
P++ SG++ GG A ++ SGK+ +L ++L L+++ R+++ S T+ LDL
Sbjct: 1039 ----PKL---PSGAYEGG--ALIKASGKLMLLQKMLRKLKEQ-GHRVLIFSQMTKMLDLL 1088
Query: 553 AQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLV 612
Y Y R+DG + + RQ+ ++ FN +F FLLS++AGG G+NL + ++
Sbjct: 1089 EDFLDYEGYKYERIDGGITGALRQEAIDRFNAHGAQQFCFLLSTRAGGLGINLATADTVI 1148
Query: 613 LFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ 672
+FD DWNP ND QA +R R GQ +V IYRF++ ++EE++ Q K L ++ +
Sbjct: 1149 IFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG 1208
Query: 673 TDSSATQGNFLSTEDLRDLFTF 694
S A G+ +S ++L D+ F
Sbjct: 1209 LGSKA--GS-MSKQELDDILKF 1227
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 474 (171.9 bits), Expect = 3.7e-40, Sum P(2) = 3.7e-40
Identities = 163/527 (30%), Positives = 241/527 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 708 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRLN 757
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R +V + S VL+
Sbjct: 758 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS-----GKFNVLLT 812
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 813 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 871
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 872 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRP 928
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + SE+ K+ K
Sbjct: 929 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGK---- 983
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
K L N I K N F+ F + G S G + SGK
Sbjct: 984 -GGAKTLMN---TIMQLRKICNHPYM-FQHIEESFAEHL--GYSNGVINGAELY-RASGK 1035
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L R+L LR T+ R++L T + + R + YLRLDGTT R L+
Sbjct: 1036 FELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLK 1094
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN+P F+FLLS++AGG GLNL + +V+FD DWNP D QA R R GQ+ V
Sbjct: 1095 KFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1154
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
+ R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1155 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1201
Score = 41 (19.5 bits), Expect = 3.7e-40, Sum P(2) = 3.7e-40
Identities = 18/101 (17%), Positives = 42/101 (41%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTR 710
E+ + + + K QK+ ++E+++ + + ED + + V+ +I N +
Sbjct: 1474 EDSIVLQSVFKSARQKIAKEEESEDESNEEE--EEEDEEESESEAKSVKVKIKLNKKDEK 1531
Query: 711 CQNYDDGAESIGEG---------DETNSANKNDQSDQEVTD 742
++ G + G D ++N+QS+ TD
Sbjct: 1532 GRDKGKGKKRPNRGKAKPVVSDFDSDEEQDENEQSEASGTD 1572
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 473 (171.6 bits), Expect = 4.5e-40, Sum P(2) = 4.5e-40
Identities = 162/527 (30%), Positives = 241/527 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 698 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRLN 747
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R +V + S VL+
Sbjct: 748 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS-----GKFNVLLT 802
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 803 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 861
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 862 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRP 918
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + SE+ K+ K
Sbjct: 919 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGK---- 973
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
K L N I K N F+ F + G S G + SGK
Sbjct: 974 -GGAKTLMN---TIMQLRKICNHPYM-FQHIEESFAEHL--GYSNGVINGAELY-RASGK 1025
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L R+L LR T+ R++L T + + R + YLRLDGTT R L+
Sbjct: 1026 FELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLK 1084
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+ V
Sbjct: 1085 KFNEPGSQYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1144
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
+ R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1145 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1191
Score = 41 (19.5 bits), Expect = 4.5e-40, Sum P(2) = 4.5e-40
Identities = 15/99 (15%), Positives = 43/99 (43%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTR 710
E+ + + + K QK+ ++E+++ + E+ + + V+ ++++ +R
Sbjct: 1446 EDSIVLQSVFKSARQKIAKEEESEDESNDDEDEDDEEESESESKSVKVKIKLNKKDEKSR 1505
Query: 711 CQNYDDGAES-------IGEGDETNSANKNDQSDQEVTD 742
+ +S + + D ++NDQS+ +D
Sbjct: 1506 EKGKGKKRQSRAKAKPVVSDDDSDEDQDENDQSEASGSD 1544
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 332 (121.9 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
Identities = 66/164 (40%), Positives = 102/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + YP+ RLDG+
Sbjct: 756 IRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 814
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 815 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 874
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ GT+EE++ +R K L ++ Q + T
Sbjct: 875 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 918
Score = 189 (71.6 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
Identities = 81/302 (26%), Positives = 136/302 (45%)
Query: 184 LRPHQREGVQFMFE--CVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKP 241
LR +Q EG+ ++ C S + ILAD+MGLGKT+Q+I+ L L F
Sbjct: 453 LRDYQLEGLNWLAHSWCKS--------NSVILADEMGLGKTIQTISFLSYL----FHQHQ 500
Query: 242 MVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ--V 299
+ +IV P S +++W+ E + W ++ + + + + + L+
Sbjct: 501 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 560
Query: 300 LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRN--DLEEFFAMVNFTNP-- 355
LI +YE + S + L DEAHRLKND +L + D + ++ P
Sbjct: 561 LITTYEILLKDKTVLG-SINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQ 619
Query: 356 GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ-FILRRTNALLSNH 414
L + + E EE+ G E + KV + F+LRR +
Sbjct: 620 NSLKELWSLLHFIMPEKFEFWEDF--EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS 677
Query: 415 LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPK 472
LP K+ +++ +++ LQ + Y +I ++N K A+++ T+ S L + LKK CNH
Sbjct: 678 LPAKVEQILRVEMSALQKQYYK-WILTRNYK-ALAKGTRGSTSGFLNIVMELKKCCNHCY 735
Query: 473 LI 474
LI
Sbjct: 736 LI 737
Score = 41 (19.5 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 376 REPTATEEEKKLGIERSSELS-AKVNQFILRRT 407
REP+ E+E+ E +E K + + RRT
Sbjct: 137 REPSEDEQEQGTSAESEAEQKKVKARRPVPRRT 169
Score = 37 (18.1 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 54 SKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQL 105
++N AL +G L V+ + + C KPP N +NG + L
Sbjct: 703 TRNYKALAKGTRG-STSGFLNIVMELKKCCNHCYL-IKPPEENERENGQEVL 752
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 311 (114.5 bits), Expect = 5.6e-40, Sum P(3) = 5.6e-40
Identities = 69/186 (37%), Positives = 106/186 (56%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL L++ T R+++ S + LD+ A + R + + RLDG+ S K
Sbjct: 1061 IRASGKLVLLDKLLIRLKE-TGHRVLIFSQMVRMLDILADYLKGRSFQFQRLDGSMSREK 1119
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R + ++ FN +F FLLS+KAGG G+NL + +++FD DWNP ND QA AR R G
Sbjct: 1120 RSQAMDRFNAVDSPDFCFLLSTKAGGLGINLSTADTVIIFDSDWNPQNDLQAEARAHRIG 1179
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI----QQEQTDSSAT--QGNFLSTEDL 688
QK V IYR +S ++EE + +R K L ++ ++ QT S T N + E+L
Sbjct: 1180 QKNHVNIYRLVSKSSVEEDILERAKQKMVLDHLVIQTMEKSQTAKSNTPNNSNVFNKEEL 1239
Query: 689 RDLFTF 694
+ F
Sbjct: 1240 EAILKF 1245
Score = 220 (82.5 bits), Expect = 5.6e-40, Sum P(3) = 5.6e-40
Identities = 76/304 (25%), Positives = 143/304 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EG+ ++ V +N + ILAD+MGLGKT+Q+I+ L L F+ + +
Sbjct: 755 LRDYQMEGLNWL---VHSWMNNTNV---ILADEMGLGKTIQTISFLSYL----FNEQDIK 804
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTD-----PCSSLQ 298
++V P S + NW+ E KW ++ D++ + +T +
Sbjct: 805 GPFLVVVPLSTIENWQREFAKWAPAMNVIVYTGTGQSRDIIRLYEFYTTNRLGKKKLNFN 864
Query: 299 VLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGIL 358
VL+ +Y+ F + + + L DEAHRLKN +++ L E + N TN ++
Sbjct: 865 VLLTTYD-FILKDKNTLGTIKWEFLAVDEAHRLKNSESV-----LHEVLKLYNTTNRLLV 918
Query: 359 GDAAYFRRYYET----SIICGREPTATEE--EKKLGIERS---SELSAKVNQFILRRTNA 409
E + + + T+ ++ ++ ++ + ++L + + +LRR
Sbjct: 919 TGTPLQNSLKELWNLLNFLMPNKFTSLKDFQDQYSDLKENDQIAQLHSVLKPHLLRRIKK 978
Query: 410 LLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCN 469
+ LPPK ++ L+ +Q + Y +I +KN + + +++ +L +T LKK CN
Sbjct: 979 DVEKSLPPKTERILRVDLSNVQKKYYK-WILTKNFQELNKGKGEKTTLLNIMTELKKTCN 1037
Query: 470 HPKL 473
HP L
Sbjct: 1038 HPYL 1041
Score = 44 (20.5 bits), Expect = 9.5e-22, Sum P(3) = 9.5e-22
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 334 DQTLTNRN-DLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKK 386
+QT+ N N + +N N G+ D + F+ +S E +++EEE +
Sbjct: 186 NQTIPNNNSNNNNNNNNINNNNNGLKKDISNFKGNESSSSESSSESSSSEEESE 239
Score = 43 (20.2 bits), Expect = 5.6e-40, Sum P(3) = 5.6e-40
Identities = 39/164 (23%), Positives = 74/164 (45%)
Query: 727 TNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDA 786
++S NKN +SD+E D L L+ ++ L +P++E L N F S+S D+
Sbjct: 1761 SSSRNKNHESDEE-DDKYYDKNL------LRKCQQYL-SPIKELLEN----FRSLS--DS 1806
Query: 787 ILQASAGDEVTFVFTNQVD-GKLVPI--ESKVSPKMQATEGNK--NPNNHITNPKPKLDQ 841
+Q S ++V+ + GK + I + K S ++ + + + + + + +L
Sbjct: 1807 KVQISREEKVSKTKKYLLSLGKEISIILDEKKSANIKDLDSHLWYSASKYTASGGKELKS 1866
Query: 842 RXXXXXXXXXXXXDVPSLENSAKFSLSASSQPKSMRTSLKGAIK 885
D S +S++ S S+SS + +S K A+K
Sbjct: 1867 LYDKMKKSSSSNNDSSS-SSSSRSSNSSSSNNSNSSSSSKPALK 1909
Score = 38 (18.4 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 702 IHENMHCTRCQNYDDGAESIGEGDETNSANKNDQS 736
+++ M + N D + S ++S+N ++ S
Sbjct: 1867 LYDKMKKSSSSNNDSSSSSSSRSSNSSSSNNSNSS 1901
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 276 (102.2 bits), Expect = 5.7e-40, Sum P(2) = 5.7e-40
Identities = 62/177 (35%), Positives = 99/177 (55%)
Query: 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKR 575
+ +GK+ LA LL L+ R+++ + T+ LD+ Q + YLRLDG+T + +R
Sbjct: 2028 DCAGKLQTLAVLLRQLKAE-GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQR 2086
Query: 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQ 635
Q L+ FN K F F+LS+++GG G+NL G + +V +D DWNP D QA R R GQ
Sbjct: 2087 QALMERFN-ADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQ 2145
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
+ V IYR +S T+EE + ++ K L + + ++A + + +R+LF
Sbjct: 2146 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTA----YFKQQTIRELF 2198
Score = 253 (94.1 bits), Expect = 5.7e-40, Sum P(2) = 5.7e-40
Identities = 87/316 (27%), Positives = 150/316 (47%)
Query: 178 PLLVRF-LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236
PLL+R LR +Q G+ ++ LN ILAD+MGLGKT+Q+I+LL L C+
Sbjct: 621 PLLLRGQLREYQHIGLDWLVTMYEKKLNG------ILADEMGLGKTIQTISLLAHLACEK 674
Query: 237 FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296
+ P +I+ PTS++ NWE E+K+W +++ + ++ + +T P ++
Sbjct: 675 GNWGPH----LIIVPTSVMLNWEMELKRWCPS-FKILTYYGAQKERKLKR-QGWTKP-NA 727
Query: 297 LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN------------ 339
V I SY+ F ++ LI DEA +KN Q+L N
Sbjct: 728 FHVCITSYKLVLQDHQAFR-RKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 786
Query: 340 --RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
+N L E +++++F P + F+ ++ + G + E + L ++R L
Sbjct: 787 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GMIEGSQEYNEGL-VKR---LHK 841
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ F+LRR + +P K V+ C+L+ Q LY+ F+ K ++ S +
Sbjct: 842 VLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMS-V 900
Query: 458 LAYITALKKLCNHPKL 473
+ + L+K+CNHP L
Sbjct: 901 INILMQLRKVCNHPNL 916
Score = 48 (22.0 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 856 VPSLENSAKFSLS---ASSQ-PKSMRTSL---KGAIKPKLSFGNQLPLKRFSPDNV 904
VP+L+ SA +L+ A +Q P S +SL GA ++ N+LP+ + P+ +
Sbjct: 1783 VPTLDPSATQTLALAPALTQAPASQASSLVSASGAASLPVTMVNRLPVPKDEPETL 1838
Score = 38 (18.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 148 TLPPGVDPLVLWQPEEPQNDGGNLVPITVDP 178
+L P V P P L P+TV P
Sbjct: 1115 SLKPAPPAPVRLSPAPPPGSSSLLKPLTVPP 1145
Score = 37 (18.1 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 484 GTTGFEDCIRFFPPEMFSG 502
G E+ +R PP++ G
Sbjct: 330 GELPLEELLRSLPPQLLGG 348
Score = 37 (18.1 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 862 SAKFSLSASSQPKSMRTSLKGAIKPKLSFGNQLPLKRFSPDNVEH 906
SA S + Q + + +L GA +L+ G PL+R NV H
Sbjct: 1210 SAGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQR----NVVH 1250
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 474 (171.9 bits), Expect = 6.3e-40, Sum P(2) = 6.3e-40
Identities = 163/527 (30%), Positives = 241/527 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 731 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRLN 780
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R +V + S VL+
Sbjct: 781 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS-----GKFNVLLT 835
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 836 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 894
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 895 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRP 951
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + SE+ K+ K
Sbjct: 952 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGK---- 1006
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
K L N I K N F+ F + G S G + SGK
Sbjct: 1007 -GGAKTLMN---TIMQLRKICNHPYM-FQHIEESFAEHL--GYSNGVINGAELY-RASGK 1058
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L R+L LR T+ R++L T + + R + YLRLDGTT R L+
Sbjct: 1059 FELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLK 1117
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN+P F+FLLS++AGG GLNL + +V+FD DWNP D QA R R GQ+ V
Sbjct: 1118 KFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1177
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
+ R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1178 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1224
Score = 39 (18.8 bits), Expect = 6.3e-40, Sum P(2) = 6.3e-40
Identities = 18/101 (17%), Positives = 41/101 (40%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTR 710
E+ + + + K QK+ ++E+++ + + ED + V+ +I N +
Sbjct: 1497 EDSIVLQSVFKSARQKIAKEEESEEESNEEE--EEEDEEESEAEAKSVKVKIKLNKKEEK 1554
Query: 711 CQNYDDGAESIGEG---------DETNSANKNDQSDQEVTD 742
++ G + G D ++N+QS+ TD
Sbjct: 1555 GRDTGKGKKRPNRGKAKPVVSDFDSDEEQDENEQSEASGTD 1595
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 289 (106.8 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 78/249 (31%), Positives = 132/249 (53%)
Query: 497 PEMFSGRSGS-WTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G +T G+ ++ SGKM +L +LL L++R R+++ S ++ LD+
Sbjct: 559 PYLFDGAEEEPYTTGEHL-IDNSGKMALLDKLLKKLKER-GSRVLIFSQMSRMLDILEDY 616
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
R Y Y R+DG+T R+ + ++N P + F FLL+++AGG G+ L + ++LFD
Sbjct: 617 MLYRGYKYARIDGSTESIVRENSIENYNKPGSDLFAFLLTTRAGGLGITLNTADIVILFD 676
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDS 675
DWNP D QA R R GQ K V +YRF++ ++EEK+ ++ K L ++ Q+
Sbjct: 677 SDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQLDALVIQQGRLV 736
Query: 676 SATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESI-GEGDETNSANKND 734
A + E+L + F D +I ++ T D+ +SI +G+E K +
Sbjct: 737 EANKN--AKPEELLAMLRFGAD---DIFKSKSSTIT---DEDIDSILKKGEE-----KTE 783
Query: 735 QSDQEVTDI 743
Q + +V D+
Sbjct: 784 QLNSKVKDL 792
Score = 229 (85.7 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 92/328 (28%), Positives = 152/328 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
+R +Q G+ ++ + L GI+G ILAD+MGLGKTLQ+I+LL Y +G G P
Sbjct: 276 MRDYQVYGLNWLIQ-----LYERGING-ILADEMGLGKTLQTISLLGYLSEYKGIRG-PH 328
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLI 301
+I+ P S +S W E +W RV + R+D+ F V I
Sbjct: 329 ----LIIAPKSTLSGWAKEFTRWCPFLRVVRFHGSKEEREDIKKNQLIF----KKFDVCI 380
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR-------------------ND 342
+YE S F S +I DEAHR+KN+ ++ ++ N+
Sbjct: 381 TTYEVAIREKSTFK-KFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNN 439
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQF 402
L E ++++NF P + + F ++++ + TE ++++ I++ L + F
Sbjct: 440 LHELWSLLNFLLPDVFSSSDDFDKWFDLA-------NNTENQQEV-IDK---LHKVLRPF 488
Query: 403 ILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI---SEETKQSKILA 459
+LRR + LPPK + L+ +Q E Y + SK++ + T + ++L
Sbjct: 489 LLRRIKTEVEKSLPPKKEIKLFVGLSTMQKEWYKRLL-SKDLDAVVVGAKGNTGRVRLLN 547
Query: 460 YITALKKLCNHPKLIYDTIKSGNPGTTG 487
L+K CNHP L +D + P TTG
Sbjct: 548 ICMQLRKACNHPYL-FDGAEE-EPYTTG 573
Score = 44 (20.5 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 431 QSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTG 487
++E++ HF+ + N + +S +L+ +A N+ +I S P G
Sbjct: 181 RTEIFTHFVSNSNNNNNTKKTKTKSPVLSSSSASSSNNNNNNNNNGSIVSSTPTKRG 237
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 334 (122.6 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 76/198 (38%), Positives = 117/198 (59%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + YP+ RLDG+
Sbjct: 794 IRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 852
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 853 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 912
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK-VIQQEQT--------DSSATQGNFLST 685
QKK+V IYR ++ GT+EE++ +R K L VIQ+ T +S + N +
Sbjct: 913 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNK 972
Query: 686 EDLRDLFTFH-DDVRSEI 702
E+L + F +D+ EI
Sbjct: 973 EELTAILKFGAEDLFKEI 990
Score = 187 (70.9 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 81/301 (26%), Positives = 136/301 (45%)
Query: 184 LRPHQREGVQFMFE--CVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKP 241
LR +Q EG+ ++ C S + ILAD+MGLGKT+Q+I+ L L F
Sbjct: 491 LRDYQLEGLNWLAHSWCKS--------NSVILADEMGLGKTIQTISFLSYL----FHQHQ 538
Query: 242 MVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ--V 299
+ +IV P S +++W+ E + W ++ + + + + + L+
Sbjct: 539 LYGPFLIVVPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 598
Query: 300 LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILG 359
LI +YE + S + L DEAHRLKND +L + L +F + G
Sbjct: 599 LITTYEILLKDKTVLG-SINWAFLGVDEAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPL 656
Query: 360 DAAYFRRYYETSIICGREPTATE---EEKKLGIERSSELSAKVNQ-FILRRTNALLSNHL 415
+ + I + E E+ G E + KV + F+LRR + L
Sbjct: 657 QNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSL 716
Query: 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPKL 473
P K+ +++ +++ LQ + Y +I ++N K A+++ T+ S L + LKK CNH L
Sbjct: 717 PAKVEQILRVEMSALQKQYYK-WILTRNYK-ALAKGTRGSTSGFLNIVMELKKCCNHCYL 774
Query: 474 I 474
I
Sbjct: 775 I 775
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 332 (121.9 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 66/164 (40%), Positives = 102/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + YP+ RLDG+
Sbjct: 787 IRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 905
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ GT+EE++ +R K L ++ Q + T
Sbjct: 906 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 949
Score = 189 (71.6 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 81/299 (27%), Positives = 136/299 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EG+ ++ S N + ILAD+MGLGKT+Q+I+ L L F +
Sbjct: 484 LRDYQLEGLNWLAH--SWCKN----NSVILADEMGLGKTIQTISFLSYL----FHQHQLY 533
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ--VLI 301
+IV P S +++W+ E + W ++ + + + + + L+ LI
Sbjct: 534 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDA 361
+YE + S + L DEAHRLKND +L + L +F + G
Sbjct: 594 TTYEILLKDKTVLG-SINWAFLGVDEAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPLQN 651
Query: 362 AYFRRYYETSIICGREPTATE---EEKKLGIERSSELSAKVNQ-FILRRTNALLSNHLPP 417
+ + I + E E+ G E + KV + F+LRR + LP
Sbjct: 652 SLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPA 711
Query: 418 KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPKLI 474
K+ +++ +++ LQ + Y +I ++N K A+++ T+ S L + LKK CNH LI
Sbjct: 712 KVEQILRVEMSALQKQYYK-WILTRNYK-ALAKGTRGSTSGFLNIVMELKKCCNHCYLI 768
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 332 (121.9 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 66/164 (40%), Positives = 102/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + YP+ RLDG+
Sbjct: 790 IRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 848
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 849 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 908
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ GT+EE++ +R K L ++ Q + T
Sbjct: 909 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 952
Score = 189 (71.6 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 81/302 (26%), Positives = 136/302 (45%)
Query: 184 LRPHQREGVQFMFE--CVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKP 241
LR +Q EG+ ++ C S + ILAD+MGLGKT+Q+I+ L L F
Sbjct: 487 LRDYQLEGLNWLAHSWCKS--------NSVILADEMGLGKTIQTISFLSYL----FHQHQ 534
Query: 242 MVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ--V 299
+ +IV P S +++W+ E + W ++ + + + + + L+
Sbjct: 535 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 594
Query: 300 LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRN--DLEEFFAMVNFTNP-- 355
LI +YE + S + L DEAHRLKND +L + D + ++ P
Sbjct: 595 LITTYEILLKDKTVLG-SINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQ 653
Query: 356 GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ-FILRRTNALLSNH 414
L + + E EE+ G E + KV + F+LRR +
Sbjct: 654 NSLKELWSLLHFIMPEKFEFWEDF--EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS 711
Query: 415 LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPK 472
LP K+ +++ +++ LQ + Y +I ++N K A+++ T+ S L + LKK CNH
Sbjct: 712 LPAKVEQILRVEMSALQKQYYK-WILTRNYK-ALAKGTRGSTSGFLNIVMELKKCCNHCY 769
Query: 473 LI 474
LI
Sbjct: 770 LI 771
Score = 41 (19.5 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 376 REPTATEEEKKLGIERSSELS-AKVNQFILRRT 407
REP+ E+E+ E +E K + + RRT
Sbjct: 153 REPSEDEQEQGTSAESEAEQKKVKARRPVPRRT 185
Score = 37 (18.1 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 54 SKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQL 105
++N AL +G L V+ + + C KPP N +NG + L
Sbjct: 737 TRNYKALAKGTRG-STSGFLNIVMELKKCCNHCYL-IKPPEENERENGQEVL 786
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 332 (121.9 bits), Expect = 6.9e-40, Sum P(2) = 6.9e-40
Identities = 66/164 (40%), Positives = 102/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + YP+ RLDG+
Sbjct: 800 IRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 858
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 859 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 918
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ GT+EE++ +R K L ++ Q + T
Sbjct: 919 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 962
Score = 189 (71.6 bits), Expect = 6.9e-40, Sum P(2) = 6.9e-40
Identities = 81/302 (26%), Positives = 136/302 (45%)
Query: 184 LRPHQREGVQFMFE--CVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKP 241
LR +Q EG+ ++ C S + ILAD+MGLGKT+Q+I+ L L F
Sbjct: 497 LRDYQLEGLNWLAHSWCKS--------NSVILADEMGLGKTIQTISFLSYL----FHQHQ 544
Query: 242 MVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ--V 299
+ +IV P S +++W+ E + W ++ + + + + + L+
Sbjct: 545 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 604
Query: 300 LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRN--DLEEFFAMVNFTNP-- 355
LI +YE + S + L DEAHRLKND +L + D + ++ P
Sbjct: 605 LITTYEILLKDKTVLG-SINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQ 663
Query: 356 GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ-FILRRTNALLSNH 414
L + + E EE+ G E + KV + F+LRR +
Sbjct: 664 NSLKELWSLLHFIMPEKFEFWEDF--EEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS 721
Query: 415 LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPK 472
LP K+ +++ +++ LQ + Y +I ++N K A+++ T+ S L + LKK CNH
Sbjct: 722 LPAKVEQILRVEMSALQKQYYK-WILTRNYK-ALAKGTRGSTSGFLNIVMELKKCCNHCY 779
Query: 473 LI 474
LI
Sbjct: 780 LI 781
Score = 41 (19.5 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 376 REPTATEEEKKLGIERSSELS-AKVNQFILRRT 407
REP+ E+E+ E +E K + + RRT
Sbjct: 166 REPSEDEQEQGTSAESEAEQKKVKARRPVPRRT 198
Score = 37 (18.1 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 54 SKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQL 105
++N AL +G L V+ + + C KPP N +NG + L
Sbjct: 747 TRNYKALAKGTRG-STSGFLNIVMELKKCCNHCYL-IKPPEENERENGQEVL 796
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 462 (167.7 bits), Expect = 7.3e-40, P = 7.3e-40
Identities = 180/664 (27%), Positives = 291/664 (43%)
Query: 184 LRPHQREGVQFM-FECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPM 242
L P+Q EG+ ++ F G ILAD+MGLGKT+Q+I LY+L +G P
Sbjct: 700 LHPYQLEGLNWLRFSWAQGT-------DTILADEMGLGKTVQTIVFLYSLYKEGHSKGPY 752
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWV---------GGRVQLIALCE---STRDDVV-SGIDS 289
+ A P S + NWE E + W G + + E S D+ + SG
Sbjct: 753 LVSA----PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKV 808
Query: 290 FT---DPCSSLQVLIVSYETFRMHSSKFSCSE-SCDLLICDEAHRLKNDQTLTNR--NDL 343
F + VL+ SYE + + E +C L+ DEAHRLKN+Q+ R N
Sbjct: 809 FRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC--LVVDEAHRLKNNQSKFFRVLNSY 866
Query: 344 EEFFAMVNFTNP--GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
+ + ++ P L + + + E E ++ +L +
Sbjct: 867 KIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 926
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEET-KQSKILAY 460
+LRR A + ++P K +V +L+ +Q + Y FI ++N + S+ Q +L
Sbjct: 927 HMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQVSLLNI 985
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
+ LKK CNHP L P E + P +GS+ G + V+ SGK
Sbjct: 986 MMDLKKCCNHPYLF--------P-VAAVEAPV--LP-------NGSYDGS--SLVKSSGK 1025
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+ +L ++L LR R+++ S T+ LDL Y Y R+DG + RQ+ ++
Sbjct: 1026 LMLLQKMLKKLRDE-GHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID 1084
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R GQ K+V
Sbjct: 1085 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM 1144
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFT---FHDD 697
IYRF++ ++EE++ Q K L ++ + S + +D+ T F DD
Sbjct: 1145 IYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDD 1204
Query: 698 VRSEIHENMHCTR----CQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCL 753
V + + Q+ G + + S D D E + + + A +
Sbjct: 1205 VEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAA--I 1262
Query: 754 HKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIES 813
KL Q T + +L N + S V +++ G E +V+ +++ E
Sbjct: 1263 SKLLD-RNQDATD-DTELQNMNEYLSSFKVAQYVVREEDGVE-------EVEREIIKQEE 1313
Query: 814 KVSP 817
V P
Sbjct: 1314 NVDP 1317
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 474 (171.9 bits), Expect = 7.7e-40, Sum P(2) = 7.7e-40
Identities = 163/527 (30%), Positives = 241/527 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 729 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRLN 778
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R +V + S VL+
Sbjct: 779 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS-----GKFNVLLT 833
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 834 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 892
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 893 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRP 949
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + SE+ K+ K
Sbjct: 950 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGK---- 1004
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
K L N I K N F+ F + G S G + SGK
Sbjct: 1005 -GGAKTLMN---TIMQLRKICNHPYM-FQHIEESFAEHL--GYSNGVINGAELY-RASGK 1056
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L R+L LR T+ R++L T + + R + YLRLDGTT R L+
Sbjct: 1057 FELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLK 1115
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN+P F+FLLS++AGG GLNL + +V+FD DWNP D QA R R GQ+ V
Sbjct: 1116 KFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1175
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
+ R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1176 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1222
Score = 38 (18.4 bits), Expect = 7.7e-40, Sum P(2) = 7.7e-40
Identities = 5/29 (17%), Positives = 17/29 (58%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQ 679
E+ + + + K QK+ ++E+++ + +
Sbjct: 1477 EDSIVLQSVFKSARQKIAKEEESEEESNE 1505
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 474 (171.9 bits), Expect = 7.9e-40, Sum P(2) = 7.9e-40
Identities = 163/527 (30%), Positives = 241/527 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 724 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRLN 773
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R +V + S VL+
Sbjct: 774 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS-----GKFNVLLT 828
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 829 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 887
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 888 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRP 944
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + SE+ K+ K
Sbjct: 945 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGK---- 999
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
K L N I K N F+ F + G S G + SGK
Sbjct: 1000 -GGAKTLMN---TIMQLRKICNHPYM-FQHIEESFAEHL--GYSNGVINGAELY-RASGK 1051
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L R+L LR T+ R++L T + + R + YLRLDGTT R L+
Sbjct: 1052 FELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLK 1110
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN+P F+FLLS++AGG GLNL + +V+FD DWNP D QA R R GQ+ V
Sbjct: 1111 KFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1170
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
+ R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1171 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1217
Score = 38 (18.4 bits), Expect = 7.9e-40, Sum P(2) = 7.9e-40
Identities = 5/29 (17%), Positives = 17/29 (58%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQ 679
E+ + + + K QK+ ++E+++ + +
Sbjct: 1490 EDSIVLQSVFKSARQKIAKEEESEDESNE 1518
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 332 (121.9 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
Identities = 66/164 (40%), Positives = 102/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + YP+ RLDG+
Sbjct: 769 IRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 827
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 828 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 887
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ GT+EE++ +R K L ++ Q + T
Sbjct: 888 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 931
Score = 188 (71.2 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
Identities = 81/301 (26%), Positives = 136/301 (45%)
Query: 184 LRPHQREGVQFMFE--CVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKP 241
LR +Q EG+ ++ C S + ILAD+MGLGKT+Q+I+ L L F
Sbjct: 466 LRDYQLEGLNWLAHSWCKS--------NSVILADEMGLGKTIQTISFLSYL----FHQHQ 513
Query: 242 MVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ--V 299
+ +IV P S +++W+ E + W ++ + + + + + L+
Sbjct: 514 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 573
Query: 300 LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILG 359
LI +YE + S + L DEAHRLKND +L + L +F + G
Sbjct: 574 LITTYEILLKDKTVLG-SINWAFLGVDEAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPL 631
Query: 360 DAAYFRRYYETSIICGREPTATE---EEKKLGIERSSELSAKVNQ-FILRRTNALLSNHL 415
+ + I + E E+ G E + KV + F+LRR + L
Sbjct: 632 QNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSL 691
Query: 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPKL 473
P K+ +++ +++ LQ + Y +I ++N K A+++ T+ S L + LKK CNH L
Sbjct: 692 PAKVEQILRVEMSALQKQYYK-WILTRNYK-ALAKGTRGSTSGFLNIVMELKKCCNHCHL 749
Query: 474 I 474
I
Sbjct: 750 I 750
Score = 39 (18.8 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 54 SKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQL 105
++N AL +G L V+ + + C KPP N +NG + L
Sbjct: 716 TRNYKALAKGTRG-STSGFLNIVMELKKCCNHCHL-IKPPEENERENGQEVL 765
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 274 (101.5 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 62/174 (35%), Positives = 97/174 (55%)
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK+ LA LL L+ R+++ + T+ LD+ Q + YLRLDG+T + +RQ L
Sbjct: 2043 GKLQTLAVLLRQLKAE-GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2101
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
+ FN K F F+LS+++GG G+NL G + +V +D DWNP D QA R R GQ +
Sbjct: 2102 MERFN-ADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 2160
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
V IYR +S T+EE + ++ K L + + ++A + + +R+LF
Sbjct: 2161 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTA----YFKQQTIRELF 2210
Score = 253 (94.1 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 87/316 (27%), Positives = 150/316 (47%)
Query: 178 PLLVRF-LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236
PLL+R LR +Q G+ ++ LN ILAD+MGLGKT+Q+I+LL L C+
Sbjct: 618 PLLLRGQLREYQHIGLDWLVTMYEKKLNG------ILADEMGLGKTIQTISLLAHLACEK 671
Query: 237 FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296
+ P +I+ PTS++ NWE E+K+W +++ + ++ + +T P ++
Sbjct: 672 GNWGPH----LIIVPTSVMLNWEMELKRWCPS-FKILTYYGAQKERKLKR-QGWTKP-NA 724
Query: 297 LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN------------ 339
V I SY+ F ++ LI DEA +KN Q+L N
Sbjct: 725 FHVCITSYKLVLQDHQAFR-RKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 783
Query: 340 --RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
+N L E +++++F P + F+ ++ + G + E + L ++R L
Sbjct: 784 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GMIEGSQEYNEGL-VKR---LHK 838
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ F+LRR + +P K V+ C+L+ Q LY+ F+ K ++ S +
Sbjct: 839 VLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMS-V 897
Query: 458 LAYITALKKLCNHPKL 473
+ + L+K+CNHP L
Sbjct: 898 INILMQLRKVCNHPNL 913
Score = 42 (19.8 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 870 SSQPKSMRTSLKGAIKPKLSFGNQLPLKRFSPDNV 904
+SQ S+ S GA ++ ++LP+ + P+ +
Sbjct: 1817 ASQASSLGVSASGAAPLPVTMVSRLPVSKDEPETL 1851
Score = 39 (18.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 484 GTTGFEDCIRFFPPEMFSGRS 504
G E+ +R PP++ G S
Sbjct: 329 GELPLEELLRSLPPQLLGGPS 349
Score = 38 (18.4 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 148 TLPPGVDPLVLWQPEEPQNDGGNLVPITVDP 178
+L P V P P L P+TV P
Sbjct: 1113 SLKPAPPAPVRLSPAPPPGSSSLLKPLTVPP 1143
Score = 37 (18.1 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 862 SAKFSLSASSQPKSMRTSLKGAIKPKLSFGNQLPLKRFSPDNVEH 906
SA S + Q + + +L GA +L+ G PL+R NV H
Sbjct: 1208 SAGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQR----NVVH 1248
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 274 (101.5 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 62/174 (35%), Positives = 97/174 (55%)
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK+ LA LL L+ R+++ + T+ LD+ Q + YLRLDG+T + +RQ L
Sbjct: 2043 GKLQTLAVLLRQLKAE-GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2101
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
+ FN K F F+LS+++GG G+NL G + +V +D DWNP D QA R R GQ +
Sbjct: 2102 MERFN-ADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 2160
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
V IYR +S T+EE + ++ K L + + ++A + + +R+LF
Sbjct: 2161 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTA----YFKQQTIRELF 2210
Score = 253 (94.1 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 87/316 (27%), Positives = 150/316 (47%)
Query: 178 PLLVRF-LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236
PLL+R LR +Q G+ ++ LN ILAD+MGLGKT+Q+I+LL L C+
Sbjct: 611 PLLLRGQLREYQHIGLDWLVTMYEKKLNG------ILADEMGLGKTIQTISLLAHLACEK 664
Query: 237 FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296
+ P +I+ PTS++ NWE E+K+W +++ + ++ + +T P ++
Sbjct: 665 GNWGPH----LIIVPTSVMLNWEMELKRWCPS-FKILTYYGAQKERKLKR-QGWTKP-NA 717
Query: 297 LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN------------ 339
V I SY+ F ++ LI DEA +KN Q+L N
Sbjct: 718 FHVCITSYKLVLQDHQAFR-RKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 776
Query: 340 --RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
+N L E +++++F P + F+ ++ + G + E + L ++R L
Sbjct: 777 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GMIEGSQEYNEGL-VKR---LHK 831
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ F+LRR + +P K V+ C+L+ Q LY+ F+ K ++ S +
Sbjct: 832 VLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMS-V 890
Query: 458 LAYITALKKLCNHPKL 473
+ + L+K+CNHP L
Sbjct: 891 INILMQLRKVCNHPNL 906
Score = 48 (22.0 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 868 SASSQPKSMRTSLKGAIKPKLSFGNQLPLKRFSPDNV 904
S +SQ S+ S GA ++ ++LP+ + PD +
Sbjct: 1815 SPASQASSLVVSASGAAPLPVTMVSRLPVSKDEPDTL 1851
Score = 39 (18.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 484 GTTGFEDCIRFFPPEMFSGRS 504
G E+ +R PP++ G S
Sbjct: 328 GELPLEELLRSLPPQLLEGPS 348
Score = 37 (18.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 150 PPGVDPLVLWQPEEPQNDGGNLVPITVDP 178
PP P+ L P P L P+TV P
Sbjct: 1110 PPA--PVRL-SPAPPPGSSSLLKPLTVPP 1135
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 274 (101.5 bits), Expect = 9.8e-40, Sum P(2) = 9.8e-40
Identities = 62/174 (35%), Positives = 97/174 (55%)
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK+ LA LL L+ R+++ + T+ LD+ Q + YLRLDG+T + +RQ L
Sbjct: 2054 GKLQTLAVLLRQLKAE-GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2112
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
+ FN K F F+LS+++GG G+NL G + +V +D DWNP D QA R R GQ +
Sbjct: 2113 MERFN-ADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 2171
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
V IYR +S T+EE + ++ K L + + ++A + + +R+LF
Sbjct: 2172 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTA----YFKQQTIRELF 2221
Score = 253 (94.1 bits), Expect = 9.8e-40, Sum P(2) = 9.8e-40
Identities = 87/316 (27%), Positives = 150/316 (47%)
Query: 178 PLLVRF-LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236
PLL+R LR +Q G+ ++ LN ILAD+MGLGKT+Q+I+LL L C+
Sbjct: 619 PLLLRGQLREYQHIGLDWLVTMYEKKLNG------ILADEMGLGKTIQTISLLAHLACEK 672
Query: 237 FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296
+ P +I+ PTS++ NWE E+K+W +++ + ++ + +T P ++
Sbjct: 673 GNWGPH----LIIVPTSVMLNWEMELKRWCPS-FKILTYYGAQKERKLKR-QGWTKP-NA 725
Query: 297 LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN------------ 339
V I SY+ F ++ LI DEA +KN Q+L N
Sbjct: 726 FHVCITSYKLVLQDHQAFR-RKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 784
Query: 340 --RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397
+N L E +++++F P + F+ ++ + G + E + L ++R L
Sbjct: 785 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GMIEGSQEYNEGL-VKR---LHK 839
Query: 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457
+ F+LRR + +P K V+ C+L+ Q LY+ F+ K ++ S +
Sbjct: 840 VLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMS-V 898
Query: 458 LAYITALKKLCNHPKL 473
+ + L+K+CNHP L
Sbjct: 899 INILMQLRKVCNHPNL 914
Score = 43 (20.2 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 868 SASSQPKSMRTSLKGAIKPKLSFGNQLPLKRFSPDNV 904
S +SQ S+ S GA ++ ++LP+ + P+ +
Sbjct: 1826 SPASQASSLVVSSSGAAPLPVTMVSRLPVSKDEPETL 1862
Score = 39 (18.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 484 GTTGFEDCIRFFPPEMFSGRS 504
G E+ +R PP++ G S
Sbjct: 330 GELPLEELLRSLPPQLLGGPS 350
Score = 38 (18.4 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 148 TLPPGVDPLVLWQPEEPQNDGGNLVPITVDP 178
+L P V P P L P+TV P
Sbjct: 1113 SLKPAPPAPVRLSPAPPPGSSNLLKPLTVPP 1143
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 290 (107.1 bits), Expect = 1.0e-39, Sum P(3) = 1.0e-39
Identities = 68/170 (40%), Positives = 93/170 (54%)
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GK+ LA LL L + R ++ + T+ LD+ Q Y Y+RLDG T I RQ L
Sbjct: 1366 GKLQKLATLLQELTSQ-GHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLL 1424
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
FN K VF+LS+++GG G+NL G + ++ +D DWNPA DKQ R R GQ +
Sbjct: 1425 TEKFNRDPKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRD 1483
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDL 688
V IYRF+S TIE + ++ K L V+ QE ++ G F S DL
Sbjct: 1484 VHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEFTTDYFGKF-SVRDL 1532
Score = 179 (68.1 bits), Expect = 1.0e-39, Sum P(3) = 1.0e-39
Identities = 52/167 (31%), Positives = 82/167 (49%)
Query: 167 DGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSI 226
+G + + + LL LRP+Q++G+ ++ + N GI LAD+MGLGKT+Q+I
Sbjct: 806 NGSKVKDVPIPSLLRGTLRPYQKQGLNWLASLYNN--NTNGI----LADEMGLGKTIQTI 859
Query: 227 ALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSG 286
+LL L C+ P +I+ PTS++ NWE E KK+ G +++ S +
Sbjct: 860 SLLAYLACEHHKWGPH----LIIVPTSVMLNWEMEFKKFAPG-FKVLTYYGSPQQRAQKR 914
Query: 287 IDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333
+ P + V I SY+ F +I DEAH +KN
Sbjct: 915 -KGWNKP-DAFHVCITSYQLVVQDQQSFK-RRRWTYMILDEAHNIKN 958
Score = 101 (40.6 bits), Expect = 1.0e-39, Sum P(3) = 1.0e-39
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 382 EEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHS 441
+EE + + R ++ + ++LRR + +P K +V C+L+ Q LY+ F+
Sbjct: 1051 DEETRNTVARLHQV---LRPYLLRRLKKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSR 1107
Query: 442 KNVKRAISEETKQSKILAYITALKKLCNHPKL 473
K ++ S I+ + L+K+CNHP L
Sbjct: 1108 AKTKETLASGNFLS-IINCLMQLRKVCNHPDL 1138
Score = 42 (19.8 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 275 LCESTRDDVVSGIDSFTDPCSSLQVLIVSYE 305
+C+ST + + + F D + L++L+V +E
Sbjct: 1194 VCQSTGKLMTT--EPFQDQINKLKILLVEFE 1222
Score = 38 (18.4 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 755 KLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVT 797
K + ++QL + ++ +F SV D + ++ G E+T
Sbjct: 1501 KKANQKRQLDNVVIQEGEFTTDYFGKFSVRDLVSDSNIGKEIT 1543
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 471 (170.9 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 164/563 (29%), Positives = 262/563 (46%)
Query: 184 LRPHQREGVQFM-FECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPM 242
L P+Q EG+ ++ F G ILAD+MGLGKT+Q+I LY+L +G P
Sbjct: 646 LHPYQLEGLNWLRFSWAQGT-------DTILADEMGLGKTVQTIVFLYSLYKEGHSKGPY 698
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWV---------GGRVQLIALCE---STRDDVV-SGIDS 289
+ A P S + NWE E + W G + + E S D+ + SG
Sbjct: 699 LVSA----PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKV 754
Query: 290 FT---DPCSSLQVLIVSYETFRMHSSKFSCSE-SCDLLICDEAHRLKNDQTLTNR--NDL 343
F + VL+ SYE + + E +C L+ DEAHRLKN+Q+ R N
Sbjct: 755 FRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC--LVVDEAHRLKNNQSKFFRVLNSY 812
Query: 344 EEFFAMVNFTNP--GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
+ + ++ P L + + + E E ++ +L +
Sbjct: 813 KIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 872
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEET-KQSKILAY 460
+LRR A + ++P K +V +L+ +Q + Y FI ++N + S+ Q +L
Sbjct: 873 HMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQVSLLNI 931
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
+ LKK CNHP L P E + P +GS+ G + V+ SGK
Sbjct: 932 MMDLKKCCNHPYLF--------P-VAAVEAPV--LP-------NGSYDGS--SLVKSSGK 971
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+ +L ++L LR R+++ S T+ LDL Y Y R+DG + RQ+ ++
Sbjct: 972 LMLLQKMLKKLRDE-GHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID 1030
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R GQ K+V
Sbjct: 1031 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM 1090
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFT---FHDD 697
IYRF++ ++EE++ Q K L ++ + S + +D+ T F DD
Sbjct: 1091 IYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDD 1150
Query: 698 VRSEIHENMHCTRCQNYDDGAES 720
V + ++++ + +YDD A S
Sbjct: 1151 VEGD-NKDVEDSSVIHYDDAAIS 1172
Score = 42 (19.8 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 712 QNYDDGAESIGEGDET------NSANKNDQSDQEVTDIG 744
Q +D A ++G+G N A++ DQ +Q IG
Sbjct: 1239 QQQEDLARNLGKGKRIRKQVNYNDASQEDQDNQSEYSIG 1277
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 332 (121.9 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 66/164 (40%), Positives = 102/164 (62%)
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
+ SGK+ +L +LL LR+R +R+++ S + LD+ A+ + YP+ RLDG+
Sbjct: 789 IRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 847
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R++ ++HFN +F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G
Sbjct: 848 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 907
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSAT 678
QKK+V IYR ++ GT+EE++ +R K L ++ Q + T
Sbjct: 908 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 951
Score = 187 (70.9 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 81/301 (26%), Positives = 136/301 (45%)
Query: 184 LRPHQREGVQFMFE--CVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKP 241
LR +Q EG+ ++ C S + ILAD+MGLGKT+Q+I+ L L F
Sbjct: 486 LRDYQLEGLNWLAHSWCKS--------NSVILADEMGLGKTIQTISFLSYL----FHQHQ 533
Query: 242 MVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ--V 299
+ +IV P S +++W+ E + W ++ + + + + + L+
Sbjct: 534 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 593
Query: 300 LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILG 359
LI +YE + S + L DEAHRLKND +L + L +F + G
Sbjct: 594 LITTYEILLKDKTVLG-SINWAFLGVDEAHRLKNDDSLLYKT-LIDFKSNHRLLITGTPL 651
Query: 360 DAAYFRRYYETSIICGREPTATE---EEKKLGIERSSELSAKVNQ-FILRRTNALLSNHL 415
+ + I + E E+ G E + KV + F+LRR + L
Sbjct: 652 QNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSL 711
Query: 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK--ILAYITALKKLCNHPKL 473
P K+ +++ +++ LQ + Y +I ++N K A+++ T+ S L + LKK CNH L
Sbjct: 712 PAKVEQILRVEMSALQKQYYK-WILTRNYK-ALAKGTRGSTSGFLNIVMELKKCCNHCYL 769
Query: 474 I 474
I
Sbjct: 770 I 770
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 277 (102.6 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 68/176 (38%), Positives = 104/176 (59%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
S K L +L R T RI++ S +T+ L + + + PY LDG T +R +
Sbjct: 895 SAKFEQLLDILEECRS-TGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVE 953
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L N FN+ + +FL+S KAGG GLNL G + ++L+D WNPA ++QAA R +R GQK
Sbjct: 954 LCNRFNEGEGD--LFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKN 1011
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ-EQTDSSATQGNFLSTEDLRDL 691
V + + ++ GTIEEK+++ Q SK+ L +VI+ E+ SS T+ E++RD+
Sbjct: 1012 TVQVIKLVAHGTIEEKMHELQESKKNLIAEVIEPGEEKLSSITE------EEIRDI 1061
Score = 237 (88.5 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 92/305 (30%), Positives = 141/305 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR RE + FE + L A G ILADDMGLGKTLQSIA + ++L + + K +
Sbjct: 609 LRAVMREYQVYGFEWMKTL--AYYRFGGILADDMGLGKTLQSIAYIDSVLPEIREKKLPI 666
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC-ESTRDDVVSGIDSFTDPCSSLQVLIV 302
++V+P+SLV NW +E+KK+ +IA ++ R ++ + F V+I
Sbjct: 667 ---LVVSPSSLVYNWLSELKKFAPHIRAVIADGNQAERRKILKDVAEF-------DVVIT 716
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAA 362
SY R ++ L DEA KN T T R ++ A F G+ G
Sbjct: 717 SYPLLRRDIRSYA--RPFHTLFLDEAQAFKNPTTQTARA-VKTIQAEYRF---GLTGTPV 770
Query: 363 YFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEV 422
SI P K+ G R +++ +V F+LRR + LP KI +
Sbjct: 771 ENSLEELWSIFHVVFPELLPGRKEFGDLRREDIAKRVKPFVLRRLKEDVLKELPDKIEHL 830
Query: 423 VCCKLTPLQSELYNHFI---HSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDT 477
+L P Q LY ++ + +K + +++KI LA +T L+++C HP L D
Sbjct: 831 QSSELLPDQKRLYAAYLAKLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDD 890
Query: 478 IKSGN 482
K +
Sbjct: 891 YKGSS 895
Score = 42 (19.8 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 438 FIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTT-GFED 490
F +K++ + + ET + AY + K + NH YD K T G ED
Sbjct: 3 FTLNKSIIKEVCGETSYKRGEAYYKSNKVIVNH----YDETKEICEATVKGNED 52
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 465 (168.7 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 165/530 (31%), Positives = 245/530 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 803
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 858
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 859 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 974
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 1029
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL--- 517
K L N I K N F+ E FS G +TGG ++L
Sbjct: 1030 -GGTKTLMN---TIMQLRKICNHPYM-FQHI-----EESFSEHLG-FTGGIVQGLDLYRA 1078
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R
Sbjct: 1079 SGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1247
Score = 45 (20.9 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 21/90 (23%), Positives = 32/90 (35%)
Query: 805 DGKLVPIESKVSPKMQATEGNKNPNNHITNPKPKLDQRXXXXXXXXXXXXDVPSLENSAK 864
+G L IE +V K + + ++ + P R P E K
Sbjct: 1361 EGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAE---K 1417
Query: 865 FSLSASSQPKSMRTSLKGAIKPKLSFGNQL 894
S + + K M+ + IK K S G QL
Sbjct: 1418 LSPNPPNLTKKMKKIVDAVIKYKDSSGRQL 1447
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 465 (168.7 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 165/530 (31%), Positives = 245/530 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 803
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 858
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 859 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 974
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 1029
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL--- 517
K L N I K N F+ E FS G +TGG ++L
Sbjct: 1030 -GGTKTLMN---TIMQLRKICNHPYM-FQHI-----EESFSEHLG-FTGGIVQGLDLYRA 1078
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R
Sbjct: 1079 SGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1247
Score = 45 (20.9 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 21/90 (23%), Positives = 32/90 (35%)
Query: 805 DGKLVPIESKVSPKMQATEGNKNPNNHITNPKPKLDQRXXXXXXXXXXXXDVPSLENSAK 864
+G L IE +V K + + ++ + P R P E K
Sbjct: 1361 EGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAE---K 1417
Query: 865 FSLSASSQPKSMRTSLKGAIKPKLSFGNQL 894
S + + K M+ + IK K S G QL
Sbjct: 1418 LSPNPPNLTKKMKKIVDAVIKYKDSSGRQL 1447
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 275 (101.9 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 94/315 (29%), Positives = 152/315 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q +G+ ++ L ++G ILADDMGLGKT+Q++A LL + G+ +
Sbjct: 662 LRTYQHQGLNWL-----QFLREYQLNG-ILADDMGLGKTIQTLA---HLLIEKQQGR-LT 711
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
K +IV PTS++ NW EI K+ ++ L + R + ++ + + + ++I S
Sbjct: 712 KPILIVAPTSVIFNWANEIDKFTP-QLSYQVLHGNKRHEQFGCLEGVENGENQVDIIITS 770
Query: 304 YETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------------LTN---RNDLE 344
Y + ++ L+ DEAH +KN +T LT N L
Sbjct: 771 YALITKDLAHYT-DRKFYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLG 829
Query: 345 EFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFIL 404
EF+A NF PG LG F + + T I EK +ER L+ ++ FIL
Sbjct: 830 EFWAQFNFLLPGFLGGQRQFTKLFRTPI-----------EKHGELERKQLLNQRIKPFIL 878
Query: 405 RRTNALLSNHLPPKIIEVVCCKLTPLQSELYN--HFIHSKNVKRAISEE-TKQSKI--LA 459
RRT ++ LPPK + ++ Q+ELY +K I+++ K+S+I L
Sbjct: 879 RRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLD 938
Query: 460 YITALKKLCNHPKLI 474
+ L+++CNHPKL+
Sbjct: 939 ALLKLRQVCNHPKLL 953
Score = 239 (89.2 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 61/168 (36%), Positives = 96/168 (57%)
Query: 527 LLGHLRQRTDD--RIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFND 584
L+ L ++ D+ +I++ S +T L L + Y++L G+T+ KRQ++V+ F
Sbjct: 970 LMETLPEQIDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTT--KRQEVVDKFQ- 1026
Query: 585 PSKNEF-VFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYR 643
+ E VFL+S +AGG GLNL + ++ FDP WNPA + QA R +R GQ K VF+Y+
Sbjct: 1027 --RGEVPVFLISLRAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYK 1084
Query: 644 FLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLS-TEDLRD 690
+ +IEEK+ + Q +K L K + E+ N LS T+D+ D
Sbjct: 1085 LIIENSIEEKIQKIQQNKAELAKALLSEEVSD-----NKLSLTDDILD 1127
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 275 (101.9 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 94/315 (29%), Positives = 152/315 (48%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q +G+ ++ L ++G ILADDMGLGKT+Q++A LL + G+ +
Sbjct: 662 LRTYQHQGLNWL-----QFLREYQLNG-ILADDMGLGKTIQTLA---HLLIEKQQGR-LT 711
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
K +IV PTS++ NW EI K+ ++ L + R + ++ + + + ++I S
Sbjct: 712 KPILIVAPTSVIFNWANEIDKFTP-QLSYQVLHGNKRHEQFGCLEGVENGENQVDIIITS 770
Query: 304 YETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------------LTN---RNDLE 344
Y + ++ L+ DEAH +KN +T LT N L
Sbjct: 771 YALITKDLAHYT-DRKFYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLG 829
Query: 345 EFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFIL 404
EF+A NF PG LG F + + T I EK +ER L+ ++ FIL
Sbjct: 830 EFWAQFNFLLPGFLGGQRQFTKLFRTPI-----------EKHGELERKQLLNQRIKPFIL 878
Query: 405 RRTNALLSNHLPPKIIEVVCCKLTPLQSELYN--HFIHSKNVKRAISEE-TKQSKI--LA 459
RRT ++ LPPK + ++ Q+ELY +K I+++ K+S+I L
Sbjct: 879 RRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLD 938
Query: 460 YITALKKLCNHPKLI 474
+ L+++CNHPKL+
Sbjct: 939 ALLKLRQVCNHPKLL 953
Score = 239 (89.2 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 61/168 (36%), Positives = 96/168 (57%)
Query: 527 LLGHLRQRTDD--RIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFND 584
L+ L ++ D+ +I++ S +T L L + Y++L G+T+ KRQ++V+ F
Sbjct: 970 LMETLPEQIDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTT--KRQEVVDKFQ- 1026
Query: 585 PSKNEF-VFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYR 643
+ E VFL+S +AGG GLNL + ++ FDP WNPA + QA R +R GQ K VF+Y+
Sbjct: 1027 --RGEVPVFLISLRAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYK 1084
Query: 644 FLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLS-TEDLRD 690
+ +IEEK+ + Q +K L K + E+ N LS T+D+ D
Sbjct: 1085 LIIENSIEEKIQKIQQNKAELAKALLSEEVSD-----NKLSLTDDILD 1127
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 470 (170.5 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 163/528 (30%), Positives = 241/528 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
L+ +Q +G+++M + LN ILAD+MG GKT+Q+IAL+ Y + +G +G P
Sbjct: 731 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGPGKTIQTIALITYLMEHKGLNG-PY 783
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLI 301
+I+ P S +SNW E KW V++ + R +V + S L+
Sbjct: 784 ----LIIVPLSTLSNWTYEFDKWAPSAVKISYKGTPAMRRSLVPQLRS-----GKFNALL 834
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RN 341
+YE + + +I DE HR+KN Q L +N
Sbjct: 835 TTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 893
Query: 342 DLEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVN 400
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 894 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLR 950
Query: 401 QFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILA 459
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + SE+ K+ K
Sbjct: 951 PFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGK--- 1006
Query: 460 YITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSG 519
K L N I K N F+ F + G S G + SG
Sbjct: 1007 --GGAKTLMN---TIMQLRKICNHPYM-FQHIEESFAEHL--GYSNGVINGAELY-RASG 1057
Query: 520 KMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLV 579
K +L R+L LR T+ R++L T + + R + YLRLDGTT R L+
Sbjct: 1058 KFELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALL 1116
Query: 580 NHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRV 639
FN+P F+FLLS++AGG GLNL + +V+FD DWNP D QA R R GQ+ V
Sbjct: 1117 KKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEV 1176
Query: 640 FIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
+ R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1177 RVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1224
Score = 39 (18.8 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 18/101 (17%), Positives = 41/101 (40%)
Query: 651 EEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTR 710
E+ + + + K QK+ ++E+++ + + ED + V+ +I N +
Sbjct: 1497 EDSIVLQSVFKSARQKIAKEEESEEESNEEE--EEEDEEESEAEAKSVKVKIKLNKKEEK 1554
Query: 711 CQNYDDGAESIGEG---------DETNSANKNDQSDQEVTD 742
++ G + G D ++N+QS+ TD
Sbjct: 1555 GRDTGKGKKRPNRGKAKPVVSDFDSDEEQDENEQSEASGTD 1595
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 471 (170.9 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 162/527 (30%), Positives = 244/527 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 766 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EFKRLN 815
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R + + S VL+
Sbjct: 816 GPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAFLPILRS-----GKFNVLVT 870
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + + +I DE HR+KN Q L +N
Sbjct: 871 TYE-YIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNK 929
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 930 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 986
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 987 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 1041
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGK 520
K L N I K N F+ F + G +G G + SGK
Sbjct: 1042 -GGTKTLMN---TIMQLRKICNHPYM-FQHIEESFSEHL--GFTGGIVQGSDLY-RASGK 1093
Query: 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580
+L R+L LR T+ +++L T + + R + YLRLDGTT R L+
Sbjct: 1094 FELLDRILPKLRA-TNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLK 1152
Query: 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640
+FNDPS F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+ V
Sbjct: 1153 NFNDPSHQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1212
Query: 641 IYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
+ R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1213 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1259
Score = 37 (18.1 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 864 KFSLSASSQPKSMRTSLKGAIKPKLSFGNQL 894
K S + S K M+ ++ IK K G QL
Sbjct: 1432 KLSPNPPSLTKKMKKTVDAVIKYKDGNGRQL 1462
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 297 (109.6 bits), Expect = 3.6e-39, Sum P(3) = 3.6e-39
Identities = 63/159 (39%), Positives = 96/159 (60%)
Query: 511 DGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTT 570
D VE SGK +L R+L L++R ++++ S T LD+ C R Y Y RLDG+
Sbjct: 607 DEQLVEASGKFLILDRMLPELKKR-GHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSM 665
Query: 571 SISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAAR 629
S + R + + F+ DP F+FLLS++AGG G+NL + +++FD DWNP D QA R
Sbjct: 666 SYADRDENMKKFSSDPEV--FLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDR 723
Query: 630 VWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
R GQ K V ++R ++ TI+EK+ +R +K L+K++
Sbjct: 724 CHRIGQTKPVVVHRLITANTIDEKILERASAKRKLEKMV 762
Score = 215 (80.7 bits), Expect = 3.6e-39, Sum P(3) = 3.6e-39
Identities = 88/316 (27%), Positives = 141/316 (44%)
Query: 161 PEEPQNDGGNLVPITVDPLLVR-FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGL 219
PE N G VP L +R +Q EG++++ +L GI+G ILAD+MGL
Sbjct: 211 PERTVN--GQPVPAQQPQLFTGGVMRWYQVEGIEWL-----RMLWENGING-ILADEMGL 262
Query: 220 GKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCES 278
GKT+Q IA + ++ K ++ ++V P S + NW +E K++ V L +
Sbjct: 263 GKTIQCIAHIAMMV-----EKKVLGPFLVVAPLSTLPNWISEFKRFTPEVSVLLYHGPQK 317
Query: 279 TRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN----- 333
R D+V I V++ S+E M KF + LI DE HR+KN
Sbjct: 318 ERLDLVKKIRQHQGSLRMCPVVVTSFE-IAMRDRKFLQRFHWNYLIVDEGHRIKNLNCRL 376
Query: 334 ---------DQTL--TN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPT 379
D L T +N+L E ++++NF P + D F +++ S I
Sbjct: 377 VQELKMLPTDNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDISTITSDAEN 436
Query: 380 ATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFI 439
E++ I L + F+LRR + ++ +PPK VV LT Q Y +
Sbjct: 437 IVANEREQNILHMLHLI--LTPFLLRRLKSDVTLEVPPKKEIVVYAPLTNKQEAFYMAIV 494
Query: 440 HSKNVKRAISEETKQS 455
+ K + + + +E +S
Sbjct: 495 N-KTIAKLLGQEKDES 509
Score = 40 (19.1 bits), Expect = 3.6e-39, Sum P(3) = 3.6e-39
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 456 KILAYITALKKLCNHPKLI 474
K+ + LK+ CNH LI
Sbjct: 575 KLQNILMLLKRCCNHAYLI 593
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 265 (98.3 bits), Expect = 3.8e-39, Sum P(2) = 3.8e-39
Identities = 64/173 (36%), Positives = 94/173 (54%)
Query: 497 PEMFSG-RSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G + GD +E SGK+H+L +LL L + R++L S TQ LD+
Sbjct: 330 PYLFDGVEPEPFEIGDHL-IEASGKLHLLDKLLAFLYSK-GHRVLLFSQMTQMLDILQDY 387
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
R Y Y R+DG+ +R + +F + F+FLLS++AGG G+NL + ++ D
Sbjct: 388 MDYRGYSYERVDGSVRGEERHLAIKNFGQ--QPIFIFLLSTRAGGVGMNLTAADTVIFVD 445
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
D+NP ND QAAAR R GQ K V + R + T+EE + ++ SK L I
Sbjct: 446 SDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIICRKAASKLKLTNTI 498
Score = 243 (90.6 bits), Expect = 3.8e-39, Sum P(2) = 3.8e-39
Identities = 86/306 (28%), Positives = 145/306 (47%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LRP+Q EGV ++ +C +GCIL D+MGLGKT Q+IA+ L + D P
Sbjct: 48 LRPYQLEGVNWLAQCFHYQ------NGCILGDEMGLGKTCQTIAVFIYLAGRLNDEGPF- 100
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+I+ P S++SNW+ E+++ G L + + + + + S VL+ +
Sbjct: 101 ---LILCPLSVLSNWKEEMERCAPG---LCCVTYAGDKEERAHLQQDLKQESGFHVLLTT 154
Query: 304 YETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEF---FAMVNFTNP--GIL 358
YE + + F S +L+ DEAHRLKN +L +++ L EF F ++ P L
Sbjct: 155 YEIC-LKDASFLKSFPWSVLVVDEAHRLKNQNSLLHKS-LSEFSVAFRLLLTGTPIQNSL 212
Query: 359 GDAAYFRRYYETSIICGREP---TATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHL 415
+ + E + E E+ + E +SEL + F+LRR A ++ L
Sbjct: 213 QELYSLLSFVEPDLFSKEEVEDFVQRYEDIEKESESASELYKLLQPFLLRRVKAEVAAEL 272
Query: 416 PPKIIEVVCCKLTPLQSELYNHFIHSK-NVKRAISEE-TKQSKILAYITALKKLCNHPKL 473
P K V+ ++ LQ + Y + + A E K+ K+ ++ L+K +HP L
Sbjct: 273 PKKTEVVIYHGMSALQKKYYKAILMKDLEISDAFENEMAKKVKLQNVLSQLRKCVDHPYL 332
Query: 474 IYDTIK 479
+D ++
Sbjct: 333 -FDGVE 337
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 465 (168.7 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 165/530 (31%), Positives = 245/530 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 803
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 858
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 859 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 974
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 1029
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL--- 517
K L N I K N F+ E FS G +TGG ++L
Sbjct: 1030 -GGTKTLMN---TIMQLRKICNHPYM-FQHI-----EESFSEHLG-FTGGIVQGLDLYRA 1078
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R
Sbjct: 1079 SGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1247
Score = 40 (19.1 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 696 DDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQE 739
+++ E+ + +R + D A S T S +K+D+S ++
Sbjct: 1365 EEIEEEVRQKKS-SRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ 1407
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 465 (168.7 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 165/530 (31%), Positives = 245/530 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 803
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 858
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 859 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 974
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 1029
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL--- 517
K L N I K N F+ E FS G +TGG ++L
Sbjct: 1030 -GGTKTLMN---TIMQLRKICNHPYM-FQHI-----EESFSEHLG-FTGGIVQGLDLYRA 1078
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R
Sbjct: 1079 SGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1247
Score = 40 (19.1 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 696 DDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQE 739
+++ E+ + +R + D A S T S +K+D+S ++
Sbjct: 1398 EEIEEEVRQKKS-SRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ 1440
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 271 (100.5 bits), Expect = 5.7e-39, Sum P(3) = 5.7e-39
Identities = 67/173 (38%), Positives = 94/173 (54%)
Query: 497 PEMFSG-RSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555
P +F G + GD E SGK+H+L +LL L R++L S TQ LD+
Sbjct: 325 PYLFDGVEPEPFEVGDHL-TEASGKLHLLDKLLAFLYSG-GHRVLLFSQMTQMLDILQDY 382
Query: 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615
R Y Y R+DG+ +R + +F + FVFLLS++AGG G+NL + ++ D
Sbjct: 383 MDYRGYSYERVDGSVRGEERHLAIKNFGQ--QPIFVFLLSTRAGGVGMNLTAADTVIFVD 440
Query: 616 PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
D+NP ND QAAAR R GQ K V + R + T+EE VY++ SK L +I
Sbjct: 441 SDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMI 493
Score = 245 (91.3 bits), Expect = 5.7e-39, Sum P(3) = 5.7e-39
Identities = 86/308 (27%), Positives = 151/308 (49%)
Query: 184 LRPHQREGVQFM---FECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGK 240
LR +Q EGV ++ F C +G CIL D+MGLGKT Q+IAL L + D
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNG---------CILGDEMGLGKTCQTIALFIYLAGRLNDEG 96
Query: 241 PMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVL 300
P +I+ P S++SNW+ E++++ G + + + D + S VL
Sbjct: 97 PF----LILCPLSVLSNWKEEMQRFAPG-LSCVTYAGDKEERACLQQDLKQE--SRFHVL 149
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEF---FAMVNFTNP-- 355
+ +YE + + F S +L+ DEAHRLKN +L ++ L EF F+++ P
Sbjct: 150 LTTYEIC-LKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKT-LSEFSVVFSLLLTGTPIQ 207
Query: 356 GILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ----FILRRTNALL 411
L + + E + +E ++ IE+ SE ++++++ F+LRR A +
Sbjct: 208 NSLQELYSLLSFVEPDLF-SKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEV 266
Query: 412 SNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHP 471
+ LP K V+ ++ LQ + Y + K++ +E K+ K+ ++ L+K +HP
Sbjct: 267 ATELPKKTEVVIYHGMSALQKKYYKAIL-MKDLDAFENETAKKVKLQNILSQLRKCVDHP 325
Query: 472 KLIYDTIK 479
L +D ++
Sbjct: 326 YL-FDGVE 332
Score = 37 (18.1 bits), Expect = 5.7e-39, Sum P(3) = 5.7e-39
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 649 TIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRD 690
T+ EK Q S V+ + S + LS E+L D
Sbjct: 601 TLLEKASQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEELED 642
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 465 (168.7 bits), Expect = 5.8e-39, Sum P(2) = 5.8e-39
Identities = 165/530 (31%), Positives = 245/530 (46%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G++++ + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRIN 803
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R V + S VL+
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-----GKFNVLLT 858
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 859 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G + EEE L I R L +
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRP 974
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAY 460
F+LRR + LP K+ V+ C ++ LQ LY H + +K V SE+ K+ K
Sbjct: 975 FLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTDGSEKDKKGK---- 1029
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL--- 517
K L N I K N F+ E FS G +TGG ++L
Sbjct: 1030 -GGTKTLMN---TIMQLRKICNHPYM-FQHI-----EESFSEHLG-FTGGIVQGLDLYRA 1078
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R
Sbjct: 1079 SGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637
L+ FN+P F+FLLS++AGG GLNL + +++FD DWNP D QA R R GQ+
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 638 RVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFL 683
V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL 1247
Score = 40 (19.1 bits), Expect = 5.8e-39, Sum P(2) = 5.8e-39
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 696 DDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQE 739
+++ E+ + +R + D A S T S +K+D+S ++
Sbjct: 1430 EEIEEEVRQKKS-SRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ 1472
>RGD|1564130 [details] [associations]
symbol:Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, (Mot1 homolog, S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1564130 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AC096310
IPI:IPI00370629 PRIDE:F1LW16 Ensembl:ENSRNOT00000024465
Uniprot:F1LW16
Length = 1848
Score = 390 (142.3 bits), Expect = 7.7e-39, Sum P(3) = 7.7e-39
Identities = 125/389 (32%), Positives = 187/389 (48%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N++ E +++ +F PG LG F Y I+ R+ ++ E++ G+ L +V
Sbjct: 1436 QNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQV 1495
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK---NVKR-----AISEE 451
F+LRR + LPPKII+ C L+PLQ +LY F S+ +V A+SEE
Sbjct: 1496 LPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEE 1555
Query: 452 TKQSKILAY------ITALKKLCNHPKLIYDTIKSGNPGTT--------GFEDCIRFFPP 497
T++ K+ A + L+KLCNHP L+ TT D I+ P
Sbjct: 1556 TEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKNTTEKLAVQNSSLHD-IQHAPK 1614
Query: 498 EMFSGRSGSWTG-GDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLC 556
+ G G+G E SG V+A+ H RI++ LD+
Sbjct: 1615 LSALKQLLLDCGLGNGTSSE-SGTESVVAQ---H-------RILIFCQLKSMLDIVEHDL 1663
Query: 557 RERRYP---YLRLDGTTSISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLV 612
+ P YLRLDG+ +R +V+ FN DPS + V LL++ GG GLNL G + +V
Sbjct: 1664 LKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSID--VLLLTTHVGGLGLNLTGADTVV 1721
Query: 613 LFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ 672
+ DWNP D QA R R GQK+ V +YR ++ GT+EEK+ Q K + + ++
Sbjct: 1722 FVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQE 1781
Query: 673 TDSSATQGNFLSTEDLRDLFTFHDDVRSE 701
S + G T+ L DLFT D ++E
Sbjct: 1782 NSSLQSMG----TDQLLDLFTLDKDGKAE 1806
Score = 122 (48.0 bits), Expect = 7.7e-39, Sum P(3) = 7.7e-39
Identities = 49/160 (30%), Positives = 72/160 (45%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q++GV ++ LN +HG IL DDMGLGKTLQSI +L CQ
Sbjct: 1265 LRKYQQDGVNWL-----AFLNKYKLHG-ILCDDMGLGKTLQSICILAGDHCQRAQEYARS 1318
Query: 244 KKA-------IIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296
K A ++V P +L +W E+ K+ R L L + I
Sbjct: 1319 KLAECMPLPSLVVCPPTLTGHWVDEVGKFCS-REYLNPLHYT--GPPTERI-RLQHQVKR 1374
Query: 297 LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT 336
+++ SY+ R + F + + I DE H +KN +T
Sbjct: 1375 HNLIVASYDVVR-NDIDFFRNIKFNYCILDEGHVIKNGKT 1413
Score = 46 (21.3 bits), Expect = 7.7e-39, Sum P(3) = 7.7e-39
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 781 MSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSPK 818
+S ++ LQ+ D++ +FT DGK +S S K
Sbjct: 1778 ISQENSSLQSMGTDQLLDLFTLDKDGKAEKADSSTSGK 1815
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 314 (115.6 bits), Expect = 7.7e-39, Sum P(3) = 7.7e-39
Identities = 65/152 (42%), Positives = 100/152 (65%)
Query: 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577
SGK+ L +LL L+ D R+++ T+ +DL + R+Y YLRLDG++ IS+R+
Sbjct: 1428 SGKLSKLDKLLVELKAN-DHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRD 1486
Query: 578 LVNHFNDPSKNE-FVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQK 636
+V + ++ E FVFLLS++AGG G+NL + ++ +D DWNP+ D QA R R GQ+
Sbjct: 1487 MVTEWQ--TRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQ 1544
Query: 637 KRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
K+V +YRF++ GTIEE++ R KE +QKV+
Sbjct: 1545 KQVTVYRFITRGTIEERIVIRAKEKEEVQKVV 1576
Score = 135 (52.6 bits), Expect = 7.7e-39, Sum P(3) = 7.7e-39
Identities = 49/173 (28%), Positives = 87/173 (50%)
Query: 170 NLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL 229
N + +L+ L+ +Q +G+ ++ L GI+G ILAD+MGLGKT+QSI+++
Sbjct: 828 NAFEVKQPKMLMCKLKEYQLKGLNWLAN-----LYEQGING-ILADEMGLGKTVQSISVM 881
Query: 230 -YTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRD-DVVSGI 287
Y G P +++ P S + NW+ EI ++V +++ I ST+D ++
Sbjct: 882 AYLAETHNIWG-PF----LVIAPASTLHNWQQEITRFVP-KLKCIPYWGSTKDRKILRKF 935
Query: 288 ---DSFT-DPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT 336
+ T D S V++ SY+ + + F S +I DEA +K+ +
Sbjct: 936 WCRKNMTYDENSPFHVVVTSYQLVVLDAQYFQ-SVKWQYMILDEAQAIKSSSS 987
Score = 111 (44.1 bits), Expect = 7.7e-39, Sum P(3) = 7.7e-39
Identities = 40/155 (25%), Positives = 71/155 (45%)
Query: 328 AHRLKNDQTLTN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEE 384
A + +N LT +N ++E +A+++F P + F ++ I E A +
Sbjct: 995 AFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDI----ESHA-QSN 1049
Query: 385 KKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV 444
+L ++ L + F+LRR + + L KI + V C LT Q LY ++
Sbjct: 1050 TQLNEQQLKRLHMILKPFMLRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISI 1109
Query: 445 ----KRAI--SEETKQSKILAYITALKKLCNHPKL 473
++AI ++T S I+ + +K+CNHP L
Sbjct: 1110 AELLEKAILGGDDTVAS-IMNLVMQFRKVCNHPDL 1143
Score = 42 (19.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 431 QSELYNHFIHSK 442
Q+ELY+HF+ K
Sbjct: 737 QTELYSHFVGRK 748
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 383 (139.9 bits), Expect = 8.1e-39, Sum P(2) = 8.1e-39
Identities = 121/387 (31%), Positives = 187/387 (48%)
Query: 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
+N++ E +++ +F PG LG F Y I+ R+ ++ E++ G+ L +V
Sbjct: 1447 QNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEALHRQV 1506
Query: 400 NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK---NVKRAIS-----EE 451
F+LRR + LPPKII+ C L+PLQ +LY F S+ NV IS E+
Sbjct: 1507 LPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVNVDDVISTASTQED 1566
Query: 452 TKQSKILAY------ITALKKLCNHPKLI----YDTIKSGNPGTTGFEDCIRFFP--PEM 499
++ K+ A + L+KLCNHP L+ + K + +R P++
Sbjct: 1567 EEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEYKHITEQLSTQHSSLRDIQHAPKL 1626
Query: 500 FSGRSGSWTGGDG-AWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE 558
+ + G G A SG V+A+ H R+++ LD+ Q +
Sbjct: 1627 SALKQLLLDCGLGSAGASDSGTEAVVAQ---H-------RVLIFCQLKSMLDIVEQDLLK 1676
Query: 559 RRYP---YLRLDGTTSISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLF 614
+ P YLRLDG+ R +V+ FN DPS + V LL++ GG GLNL G + +V
Sbjct: 1677 PQLPGVTYLRLDGSVQAGLRHSIVSRFNNDPSID--VLLLTTHVGGLGLNLTGADTVVFV 1734
Query: 615 DPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTD 674
+ DWNP D QA R R GQK+ V +YR ++ GT+EEK+ Q K + + ++
Sbjct: 1735 EHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMTIANTVISQENA 1794
Query: 675 SSATQGNFLSTEDLRDLFTFHDDVRSE 701
S + G TE L +LFT D ++E
Sbjct: 1795 SLQSMG----TEQLLNLFTLDKDDKAE 1817
Score = 126 (49.4 bits), Expect = 8.1e-39, Sum P(2) = 8.1e-39
Identities = 50/179 (27%), Positives = 79/179 (44%)
Query: 167 DGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSI 226
DG L + + LR +Q++GV ++ LN +HG IL DDMGLGKTLQSI
Sbjct: 1259 DGRKLENYKIPVPIKAELRKYQQDGVNWL-----AFLNKYKLHG-ILCDDMGLGKTLQSI 1312
Query: 227 ALL---YTLLCQGF------DGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCE 277
+L + L Q + D P+ +I+V P +L +W E+ K+ + +
Sbjct: 1313 CILAGDHFLRAQEYTRTKAPDSCPL--PSIVVCPPTLTGHWVDEVGKFCSK--EFLNPLH 1368
Query: 278 STRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT 336
T +++ SY+ R + +F + I DE H +KN +T
Sbjct: 1369 YTGPPTERA--RLQHQVKKHNLIVASYDVVR-NDVEFFRDIKFNYCILDEGHVIKNGKT 1424
WARNING: HSPs involving 310 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 911 853 0.00082 122 3 11 22 0.41 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 560
No. of states in DFA: 625 (66 KB)
Total size of DFA: 435 KB (2208 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 76.23u 0.33s 76.56t Elapsed: 00:00:05
Total cpu time: 76.36u 0.34s 76.70t Elapsed: 00:00:05
Start: Sat May 11 03:23:09 2013 End: Sat May 11 03:23:14 2013
WARNINGS ISSUED: 2