BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043990
(911 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/651 (43%), Positives = 383/651 (58%), Gaps = 81/651 (12%)
Query: 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
V + VDP+L + LRPHQREGV+F+++CV+G +GCI+AD+MGLGKTLQ I L++T
Sbjct: 44 VHVVVDPVLSKVLRPHQREGVKFLWDCVTGR-RIENSYGCIMADEMGLGKTLQCITLIWT 102
Query: 232 LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFT 291
LL Q D KP + K I+V+P+SLV NW E+ KW+GGRVQ +A+ ++D++ S + +F
Sbjct: 103 LLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFI 162
Query: 292 DPCS---SLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTN--------- 339
+LI+SYETFR+H+ L+ICDE HRLKN T
Sbjct: 163 SQQGMRIPTPILIISYETFRLHAEVLH-KGKVGLVICDEGHRLKNSDNQTYLALNSMNAQ 221
Query: 340 ----------RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGI 389
+NDL E+F++V+F N GILG A F++ +E I+ GR+ A+++++ G
Sbjct: 222 RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGE 281
Query: 390 ERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAIS 449
++ EL + VN+ ++RRT+ +LS +LP KI +VVCC LTPLQ ELY F+ ++
Sbjct: 282 QKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ 341
Query: 450 EETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTG 509
L+ IT+LKKLCNHP LIY+ +G G G D P+ +S ++
Sbjct: 342 TGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLF----PQNYSTKAVE--- 394
Query: 510 GDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT 569
+LSGKM VL +L R T D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT
Sbjct: 395 -----PQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGT 449
Query: 570 TSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAAR 629
SI KR K+V FN+PS EF+F+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA AR
Sbjct: 450 MSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 509
Query: 630 VWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLR 689
VWRDGQKK +IYR LSTGTIEEK+ QRQ K+ L + E+ D S +LR
Sbjct: 510 VWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVE----RHFSLGELR 565
Query: 690 DLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGL 749
+LF+ ++ S+ H+ C RC N G + D+++
Sbjct: 566 ELFSLNEKTLSDTHDRFRCRRCVN---GRQVRPPPDDSDCT------------------- 603
Query: 750 AGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVF 800
C DL+NW H + D +LQAS V+FVF
Sbjct: 604 --C-----------------DLSNWHHCADKRGLRDPVLQASWDAAVSFVF 635
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 192 bits (487), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 150/526 (28%), Positives = 241/526 (45%), Gaps = 77/526 (14%)
Query: 174 ITVDPLLVRF--LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
++V P ++ LR Q G+ +M L + G +G ILAD+MGLGKT+Q++A +
Sbjct: 225 LSVQPPFIKGGELRDFQLTGINWM-----AFLWSKGDNG-ILADEMGLGKTVQTVAFISW 278
Query: 232 LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFT 291
L+ P IIV P S + W +KW + + D + + +T
Sbjct: 279 LIFARRQNGP----HIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYT 334
Query: 292 DP------CSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT--------- 336
+P VL+ +YE ++ S + DEAHRLKN ++
Sbjct: 335 NPRAKGKKTMKFNVLLTTYEYILKDRAELG-SIKWQFMAVDEAHRLKNAESSLYESLNSF 393
Query: 337 -LTNR---------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKK 386
+ NR N+++E A+VNF PG R+ +I + +EE++
Sbjct: 394 KVANRMLITGTPLQNNIKELAALVNFLMPG---------RF---TIDQEIDFENQDEEQE 441
Query: 387 LGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKR 446
E +L ++ FILRR + LP K ++ +L+ +Q+E Y + +
Sbjct: 442 ---EYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSAL 498
Query: 447 AISEETKQSKILAYITALKKLCNHPKLIYD----TIKSGNPGTTGFEDCIRFFPPEMFSG 502
+ +L + LKK NHP L + ++ G E+ +R
Sbjct: 499 TAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLR--------- 549
Query: 503 RSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP 562
+ SGKM +L +LL L+ + R+++ S + LD+ +
Sbjct: 550 ----------GLIMSSGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGIN 598
Query: 563 YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAN 622
+ RLDGT ++R+ ++HFN P N+FVFLLS++AGG G+NL+ + +V+FD DWNP
Sbjct: 599 FQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQA 658
Query: 623 DKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668
D QA AR R GQK V +YR +S T+EE+V +R K L+ I
Sbjct: 659 DLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAI 704
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 150/538 (27%), Positives = 244/538 (45%), Gaps = 111/538 (20%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPM- 242
LRP+Q +G +M +N G C LADDMGLGKTLQ+IA+ D K
Sbjct: 38 LRPYQIKGFSWM-----RFMNKLGFGIC-LADDMGLGKTLQTIAVFS-------DAKKEN 84
Query: 243 -VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLI 301
+ ++++ P S++ NWE E+ K+ ++ E D +++
Sbjct: 85 ELTPSLVICPLSVLKNWEEELSKF-APHLRFAVFHE----------DRSKIKLEDYDIIL 133
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------------LTN---RND 342
+Y + ++ E ++ DEA +KN QT LT N
Sbjct: 134 TTYAVL-LRDTRLKEVE-WKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENK 191
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQF 402
+++ ++++ F NPG+LG + F+ + T I G + A EE L A ++ F
Sbjct: 192 VDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG-DNMAKEE-----------LKAIISPF 239
Query: 403 ILRRT--NALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK-NVKRAISEETKQSKILA 459
ILRRT + + N LP KI V C LTP Q+ +Y + + N +++ ++ IL+
Sbjct: 240 ILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILS 299
Query: 460 YITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSG 519
+ LK++ +HP L+ GG+ + V SG
Sbjct: 300 TLLKLKQIVDHPALL---------------------------------KGGEQS-VRRSG 325
Query: 520 KMHVLARLLGHLRQRTD--DRIVLVSNYTQTLDLFAQLCRER---RYPYLRLDGTTSISK 574
KM R + + + D D+I + + + + + + P+L G S +
Sbjct: 326 KM---IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLY--GELSKKE 380
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R +++ F + +F+ +LS KAGG G+NL NR++ FD WNPA + QA RV+R G
Sbjct: 381 RDDIISKFQNNPSVKFI-VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIG 439
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
Q + V +++ +S GT+EEK+ Q K L K I DS T+ LSTE+LR +
Sbjct: 440 QTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIIS-SGDSWITE---LSTEELRKVI 493
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 147/538 (27%), Positives = 236/538 (43%), Gaps = 111/538 (20%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPM- 242
LRP+Q +G + N G C LADD GLGKTLQ+IA+ D K
Sbjct: 38 LRPYQIKGFSW-----XRFXNKLGFGIC-LADDXGLGKTLQTIAVFS-------DAKKEN 84
Query: 243 -VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLI 301
+ ++++ P S++ NWE E+ K+ ++ E D +++
Sbjct: 85 ELTPSLVICPLSVLKNWEEELSKF-APHLRFAVFHE----------DRSKIKLEDYDIIL 133
Query: 302 VSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------------LTN---RND 342
+Y + ++ E ++ DEA +KN QT LT N
Sbjct: 134 TTYAVL-LRDTRLKEVE-WKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENK 191
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQF 402
+++ +++ F NPG+LG + F+ + T I G + A EE L A ++ F
Sbjct: 192 VDDLWSIXTFLNPGLLGSYSEFKSKFATPIKKG-DNXAKEE-----------LKAIISPF 239
Query: 403 ILRRT--NALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK-NVKRAISEETKQSKILA 459
ILRRT + + N LP KI V C LTP Q+ Y + + N +++ ++ IL+
Sbjct: 240 ILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAXYKAEVENLFNNIDSVTGIKRKGXILS 299
Query: 460 YITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSG 519
+ LK++ +HP L+ G E +R RSG
Sbjct: 300 TLLKLKQIVDHPALL-----------KGGEQSVR---------RSGK------------- 326
Query: 520 KMHVLARLLGHLRQRTD--DRIVLVSNYTQTLDLFAQLCRER---RYPYLRLDGTTSISK 574
R + + D D+I + + + + + + P+L G S +
Sbjct: 327 ----XIRTXEIIEEALDEGDKIAIFTQFVDXGKIIRNIIEKELNTEVPFLY--GELSKKE 380
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
R +++ F + +F+ +LS KAGG G+NL NR++ FD WNPA + QA RV+R G
Sbjct: 381 RDDIISKFQNNPSVKFI-VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIG 439
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
Q + V +++ +S GT+EEK+ Q K L K I DS T+ LSTE+LR +
Sbjct: 440 QTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIIS-SGDSWITE---LSTEELRKVI 493
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 135/286 (47%), Gaps = 46/286 (16%)
Query: 411 LSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK-NVKRAISEETKQSKILAYITALKKLCN 469
+++ LP KI V C LTP Q+ +Y + + N +++ ++ IL+ + LK++ +
Sbjct: 21 MASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVD 80
Query: 470 HPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLG 529
HP L+ G E +R RSG ++ M ++ L
Sbjct: 81 HPALL-----------KGGEQSVR---------RSG----------KMIRTMEIIEEALD 110
Query: 530 HLRQRTDDRIVLVSNYTQTLDLFAQLCRER---RYPYLRLDGTTSISKRQKLVNHFNDPS 586
D+I + + + + + + P+L G S +R +++ F +
Sbjct: 111 E-----GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLY--GELSKKERDDIISKFQNNP 163
Query: 587 KNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLS 646
+F+ +LS KAGG G+NL NR++ FD WNPA + QA RV+R GQ + V +++ +S
Sbjct: 164 SVKFI-VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS 222
Query: 647 TGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
GT+EEK+ Q K L K I DS T+ LSTE+LR +
Sbjct: 223 VGTLEEKIDQLLAFKRSLFKDIIS-SGDSWITE---LSTEELRKVI 264
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRV 270
+LAD++GLGKT+++ +L+ L G ++ +I+ P +L W E + R
Sbjct: 173 VLLADEVGLGKTIEAGXILHQQLLSG-----AAERVLIIVPETLQHQWLVEXLRRFNLR- 226
Query: 271 QLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFS--CSESCDLLICDEA 328
AL + R +P + Q++I S + R + C DLL+ DEA
Sbjct: 227 --FALFDDER--YAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEA 282
Query: 329 HRL 331
H L
Sbjct: 283 HHL 285
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 209 HGCILADDMGLGKTLQS-IALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEIKK 264
H I G GKT I + L+ FD + MV KA+IV PT L EAE+KK
Sbjct: 61 HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAEVKK 117
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 209 HGCILADDMGLGKTLQS-IALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEIKK 264
H I G GKT I + L+ FD + MV KA+IV PT L EAE+KK
Sbjct: 112 HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAEVKK 168
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 209 HGCILADDMGLGKTLQS-IALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEIKK 264
H I G GKT I + L+ FD + MV KA+IV PT L EAE+KK
Sbjct: 61 HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAEVKK 117
>pdb|3HH8|A Chain A, Crystal Structure And Metal Binding Properties Of The
Lipoprotein Mtsa
Length = 294
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 434 LYNHFIHSKNVKRAI------SEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTG 487
L N I+SKN+ + + ++ET + + AY+ L+KL K +D I
Sbjct: 129 LENGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVT 188
Query: 488 FEDCIRFF 495
E C ++F
Sbjct: 189 SEGCFKYF 196
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 483 PGTTGFEDCIRFFPPEMFSGRSGSW--TGGDGAWVEL------SGKMHVLARLLGHLRQR 534
PGTT + D R E ++G W G DG W+++ S + + L Q
Sbjct: 285 PGTTVYPDFFREDTREWWAGLISEWLSQGVDGIWLDMNEPTDFSRAIEIRDVLSSLPVQF 344
Query: 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLL 594
DDR+V T D R +R + ++ + + F +NE +F+L
Sbjct: 345 RDDRLV-----TTFPDNVVHYLRGKRVKHEKVRNAYPLYEAMATFKGFRTSHRNE-IFIL 398
Query: 595 SSKAGGCGLN 604
S+AG G+
Sbjct: 399 -SRAGYAGIQ 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,131,860
Number of Sequences: 62578
Number of extensions: 1091715
Number of successful extensions: 2292
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2259
Number of HSP's gapped (non-prelim): 19
length of query: 911
length of database: 14,973,337
effective HSP length: 108
effective length of query: 803
effective length of database: 8,214,913
effective search space: 6596575139
effective search space used: 6596575139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)