BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043990
(911 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4PBL4|RAD54_ORYSJ DNA repair and recombination protein RAD54 OS=Oryza sativa subsp.
japonica GN=RAD54 PE=1 SV=1
Length = 980
Score = 1209 bits (3128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/791 (73%), Positives = 655/791 (82%), Gaps = 32/791 (4%)
Query: 48 SDEDRKSKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLAR 107
+D +RKS+NVDALVRGNLVV+RQ L+PR+LSV++ AA+ RKPFKPPC NGY N+QLAR
Sbjct: 100 NDRERKSQNVDALVRGNLVVRRQPLIPRILSVSDAAAIARKPFKPPCQNGYSENNEQLAR 159
Query: 108 RLCARKRFVPWGSSRPVLVTITNRL-DLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQN 166
RL ARKRFVPWGS +P +TN L P ++ +E +LPPG++PL+LWQPE
Sbjct: 160 RLSARKRFVPWGSVQPF--AVTNILPQSPAVSSDDSVENEESLPPGIEPLILWQPEGRDK 217
Query: 167 DGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSI 226
+ N I VD LLVR+LRPHQREGVQFMF+CVSGLLN GI GCILADDMGLGKTLQSI
Sbjct: 218 ENSNFSAIKVDHLLVRYLRPHQREGVQFMFDCVSGLLNDDGISGCILADDMGLGKTLQSI 277
Query: 227 ALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSG 286
LLYTLLCQGFD KPMVK+A++VTPTSLVSNWE+EI KW+ GRVQL+ALCESTR DV+SG
Sbjct: 278 TLLYTLLCQGFDAKPMVKRAVVVTPTSLVSNWESEIIKWLKGRVQLLALCESTRADVLSG 337
Query: 287 IDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR------ 340
I+SF P S LQVLIVSYETFRMHSSKF SCDLLICDEAHRLKNDQTLTN+
Sbjct: 338 IESFLKPLSRLQVLIVSYETFRMHSSKFERPGSCDLLICDEAHRLKNDQTLTNKALAALP 397
Query: 341 -------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKL 387
NDLEEFF+MVNFTNPG+LGDA YFRRYYE IICGREPTA+ EEK L
Sbjct: 398 CKRRILLSGTPMQNDLEEFFSMVNFTNPGVLGDATYFRRYYEAPIICGREPTASAEEKNL 457
Query: 388 GIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRA 447
G ERS+ELSAKVN FILRRTNALLSNHLPPKI+EVVCCKLT LQ+ LYNHFIHSKNVKR
Sbjct: 458 GSERSAELSAKVNLFILRRTNALLSNHLPPKIVEVVCCKLTALQTALYNHFIHSKNVKRL 517
Query: 448 ISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSW 507
ISE TKQSK+LAYITALKKLCNHPKLIYDTIKS N G +GF+DC+RFFPPE+FSGRSGSW
Sbjct: 518 ISEGTKQSKVLAYITALKKLCNHPKLIYDTIKSNNSGGSGFDDCLRFFPPELFSGRSGSW 577
Query: 508 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLD 567
TGG G WVELSGKMHVLARLLGHLR +TDDRIVLVSNYTQTLDLFAQLCRERRYPY+RLD
Sbjct: 578 TGGGGMWVELSGKMHVLARLLGHLRLKTDDRIVLVSNYTQTLDLFAQLCRERRYPYIRLD 637
Query: 568 GTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAA 627
G TSI+KRQKLVN FNDPS++EFVFLLSSKAGGCGLNL+GGNRL+LFDPDWNPANDKQAA
Sbjct: 638 GATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNLVGGNRLILFDPDWNPANDKQAA 697
Query: 628 ARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTED 687
ARVWRDGQKKRV+IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ D QG+ LSTED
Sbjct: 698 ARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQADGK-MQGSSLSTED 756
Query: 688 LRDLFTFHDDVRSEIHENMHCTRCQNYD-----DGAESIGEGDETNSANKNDQSDQEVTD 742
LRDLFTFH+ +RSEIHEN+ C RC N D DG++ E ++N + S D
Sbjct: 757 LRDLFTFHEQIRSEIHENLKCNRC-NKDGCMVLDGSKFDSAATEHEASNSGENS---YID 812
Query: 743 IGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTN 802
IGGF ++GC+ K+ SS +Q+G+P EEDL +WGHH +VPD ILQ S+GDEV+FVFTN
Sbjct: 813 IGGFGAISGCVQKMNSSNQQIGSPSEEDLGSWGHHSDPSTVPDTILQCSSGDEVSFVFTN 872
Query: 803 QVDGKLVPIES 813
Q+DGKLVP+ES
Sbjct: 873 QIDGKLVPVES 883
>sp|B4KHL5|RAD54_DROMO DNA repair and recombination protein RAD54-like OS=Drosophila
mojavensis GN=okr PE=3 SV=1
Length = 783
Score = 521 bits (1343), Expect = e-147, Method: Compositional matrix adjust.
Identities = 283/641 (44%), Positives = 397/641 (61%), Gaps = 57/641 (8%)
Query: 103 DQLARRLCARKRFVPWGSSRPVLVTITNR-LDLPRTVENNVIEENFTLPPGVDPLVLWQP 161
+Q ++ ARK VP + P NR L + RT+ + + P + LVL+ P
Sbjct: 66 EQAIAKVLARKFKVPIANYVPDYGG--NRTLGVRRTIVRRALHD----PQACNALVLYVP 119
Query: 162 ------EEPQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILA 214
E D + V + VDP+L LRPHQREGV+FM+ECV G +GCI+A
Sbjct: 120 PAYTEHERMSMDPSKVQVHVVVDPILSNVLRPHQREGVRFMYECVEG--KRGNFNGCIMA 177
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIA 274
D+MGLGKTLQ + L +TLL Q D KP + KAIIV+P+SLV NWE E KW+ GR+ +A
Sbjct: 178 DEMGLGKTLQCVTLTWTLLRQSPDCKPTISKAIIVSPSSLVKNWEKEFTKWLHGRMHCLA 237
Query: 275 LCESTRDDVVSGIDSF---TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331
+ +++D ++ F T VL++SYETFR+++ C ++ICDE HRL
Sbjct: 238 MEGGSKEDTTRALEQFAMNTATRCGTPVLLISYETFRLYAHIL-CKTEVGMVICDEGHRL 296
Query: 332 KNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSI 372
KN LT + NDL E+F++VNF NP +LG AA F+R +E SI
Sbjct: 297 KNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSI 356
Query: 373 ICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQS 432
+ G+ +T+ E++ ++++ EL VNQ I+RRTN +L+ +LP K VVC KLTP+Q
Sbjct: 357 LRGQNADSTDAERQRALQKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCVKLTPVQL 416
Query: 433 ELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIKSGNPGTTGFED 490
++Y +F+ S V+R++++ +++ + LA IT LKKLCNHP LIY+ I + GFE+
Sbjct: 417 QIYTNFLKSDQVRRSLADCNEKASLTALADITTLKKLCNHPDLIYEKIAAKE---KGFEN 473
Query: 491 CIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLD 550
PP ++ D ELSGK +L +L +R +DD++VL+SNYTQTLD
Sbjct: 474 SQNVLPP--------NYKPKD-VNPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLD 524
Query: 551 LFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNR 610
LF QL R+R+Y Y+RLDGT +I KR K+V+ FNDPS + F+F+LSSKAGGCGLNLIG NR
Sbjct: 525 LFEQLARKRKYTYVRLDGTMTIKKRSKVVDRFNDPSTDCFLFMLSSKAGGCGLNLIGANR 584
Query: 611 LVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQ 670
L +FDPDWNPAND+QA ARVWRDGQKK +IYR +++G+IEEK+ QRQ K+ L I
Sbjct: 585 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTI-- 642
Query: 671 EQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC 711
D++ + + +DL+DLF+F +V S+ H + C RC
Sbjct: 643 --IDNNESSEKHFTRDDLKDLFSFEANVLSDTHNKLKCKRC 681
>sp|Q92698|RAD54_HUMAN DNA repair and recombination protein RAD54-like OS=Homo sapiens
GN=RAD54L PE=1 SV=2
Length = 747
Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust.
Identities = 280/589 (47%), Positives = 374/589 (63%), Gaps = 47/589 (7%)
Query: 154 DPLVLWQP------EEPQNDGGNL-VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAA 206
D LVL++P ++ + D L V + VDP+L + LRPHQREGV+F++ECV+
Sbjct: 116 DALVLYEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSR-RIP 174
Query: 207 GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266
G HGCI+AD+MGLGKTLQ I L++TLL Q + KP + KA++V+P+SLV NW E+ KW+
Sbjct: 175 GSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWL 234
Query: 267 GGRVQLIALCESTRDDVVSGIDSFTDPCS---SLQVLIVSYETFRMHSSKFSCSESCDLL 323
GGR+Q +A+ ++D++ ++ F + S +LI+SYETFR+H S L+
Sbjct: 235 GGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQ-KGSVGLV 293
Query: 324 ICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYF 364
ICDE HRLKN + T + NDL E+F++V+F N GILG A F
Sbjct: 294 ICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEF 353
Query: 365 RRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVC 424
++++E I+ GR+ A+E +++LG ER EL++ VN+ ++RRT+ +LS +LP KI +VVC
Sbjct: 354 KKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVC 413
Query: 425 CKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPG 484
C+LTPLQ+ELY F+ + E L+ IT+LKKLCNHP LIYD G
Sbjct: 414 CRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDG 473
Query: 485 TTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSN 544
G D FPP S +LSGKM VL +L R R+ D++VLVSN
Sbjct: 474 FVGALD---LFPPGYSS---------KALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSN 521
Query: 545 YTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLN 604
YTQTLDLF +LCR RRY Y+RLDGT SI KR K+V FN PS +FVF+LSSKAGGCGLN
Sbjct: 522 YTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLN 581
Query: 605 LIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
LIG NRLV+FDPDWNPAND+QA ARVWRDGQKK +IYR LS GTIEEK++QRQ K+ L
Sbjct: 582 LIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKAL 641
Query: 665 QKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQN 713
+ E+ D S +L++LF + S+ H+ +HC RC N
Sbjct: 642 SSCVVDEEQDVE----RHFSLGELKELFILDEASLSDTHDRLHCRRCVN 686
>sp|P70270|RAD54_MOUSE DNA repair and recombination protein RAD54-like OS=Mus musculus
GN=Rad54l PE=1 SV=2
Length = 747
Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust.
Identities = 272/566 (48%), Positives = 366/566 (64%), Gaps = 44/566 (7%)
Query: 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
V + VDP+L + LRPHQREGV+F++ECV+ G HGCI+AD+MGLGKTLQ I L++T
Sbjct: 141 VHVVVDPILSKVLRPHQREGVKFLWECVTSR-RIPGSHGCIMADEMGLGKTLQCITLMWT 199
Query: 232 LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFT 291
LL Q + KP ++KA++V+P+SLV NW E++KW+GGR+Q +A+ ++D++ ++ F
Sbjct: 200 LLRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKWLGGRIQPLAIDGGSKDEIDRKLEGFM 259
Query: 292 DPCSSL---QVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR-------- 340
+ + +LI+SYETFR+H + L+ICDE HRLKN + T +
Sbjct: 260 NQRGARVPSPILIISYETFRLHVGVLK-KGNVGLVICDEGHRLKNSENQTYQALDSLNTS 318
Query: 341 -----------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGI 389
NDL E+F++V+F N GILG A F++++E I+ R+ A+E +++ G
Sbjct: 319 RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKSRDAAASEADRQRGE 378
Query: 390 ERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAIS 449
ER EL VN+ ++RRT+ +LS +LP KI +VVCC+LTPLQ+ELY F+ + +
Sbjct: 379 ERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPEEELR 438
Query: 450 EETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTG 509
E L+ IT+LKKLCNHP LIYD + GFE + FPP G
Sbjct: 439 EGKMSVSSLSSITSLKKLCNHPALIYDKCVAEE---DGFEGTLGIFPP-----------G 484
Query: 510 GDGAWVE--LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLD 567
+ VE LSGKM VL +L R R+ D++VLVSNYTQTLDLF +LCR RRY Y+RLD
Sbjct: 485 YNSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVRRYLYVRLD 544
Query: 568 GTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAA 627
GT SI KR K+V FN PS +FVF+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA
Sbjct: 545 GTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAM 604
Query: 628 ARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTED 687
ARVWRDGQKK +IYR LS GTIEEK++QRQ K+ L + E+ D S +
Sbjct: 605 ARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVE----RHFSLGE 660
Query: 688 LRDLFTFHDDVRSEIHENMHCTRCQN 713
L++LFT + S+ H+ +HC RC N
Sbjct: 661 LKELFTLDEASLSDTHDRLHCRRCVN 686
>sp|B4NXB8|RAD54_DROYA DNA repair and recombination protein RAD54-like OS=Drosophila
yakuba GN=okr PE=3 SV=2
Length = 784
Score = 516 bits (1329), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/592 (45%), Positives = 382/592 (64%), Gaps = 49/592 (8%)
Query: 150 PPGVDPLVLWQP---EEPQNDGGN----LVPITVDPLLVRFLRPHQREGVQFMFECVSGL 202
P + LVL+ P E + G + LV + VDPLL LRPHQREGV+FM+ECV G
Sbjct: 115 PVACNALVLFNPPAYTEHERMGMDPTKVLVHVVVDPLLSNILRPHQREGVRFMYECVEG- 173
Query: 203 LNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262
+GCI+AD+MGLGKTLQ + L++TLL QG + KP + KAI+V+P+SLV NWE E
Sbjct: 174 -KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEF 232
Query: 263 KKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSL--QVLIVSYETFRMHSSKFSCSESC 320
KW+ GR+ + + T+++ + ++ F+ S L VL++SYETFR+++ + C
Sbjct: 233 TKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVLLISYETFRIYA-EILCKYEV 291
Query: 321 DLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDA 361
++ICDE HRLKN LT + NDL E++++VNF NP +LG A
Sbjct: 292 GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTA 351
Query: 362 AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIE 421
A F+R +E++I+ G+ +TE E++ IE++ EL V+Q I+RRTN +L+ +LP K
Sbjct: 352 AVFKRNFESAILRGQNTDSTEGERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEM 411
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIK 479
V+C KLT +Q ELY +F+ S V+R++++ +++ + LA IT LKK+C+HP LIY+ I
Sbjct: 412 VICAKLTSIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKIT 471
Query: 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
+ GFE+ P ++ D ELSGK +L +L +R +D++
Sbjct: 472 ARE---KGFENSQNVLP--------SNYNTKDLN-PELSGKFMLLDFMLAAIRADGNDKV 519
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599
VL+SNYTQTLDLF QL R+R+Y ++RLDGT SI KR K+V+ FNDP + F+F+LSSKAG
Sbjct: 520 VLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAG 579
Query: 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659
GCGLNLIG NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR +++G+IEEK+ QRQ
Sbjct: 580 GCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSIEEKILQRQT 639
Query: 660 SKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC 711
K+ L I D++ + + +DL+DLFTF D+ S+ HE + C RC
Sbjct: 640 HKKSLSSTI----IDNNESAEKHFTRDDLKDLFTFDADILSDTHEKLKCKRC 687
>sp|B4M9A8|RAD54_DROVI DNA repair and recombination protein RAD54-like OS=Drosophila
virilis GN=okr PE=3 SV=1
Length = 786
Score = 515 bits (1326), Expect = e-145, Method: Compositional matrix adjust.
Identities = 271/605 (44%), Positives = 378/605 (62%), Gaps = 50/605 (8%)
Query: 138 VENNVIEENFTLPPGVDPLVLWQP------EEPQNDGGNL-VPITVDPLLVRFLRPHQRE 190
V +++ P + LVL+ P E D L V + VDP+L LRPHQRE
Sbjct: 96 VRRSIVRRALHDPQACNALVLYTPPAYTEHERMSLDPSKLQVHVVVDPILSNVLRPHQRE 155
Query: 191 GVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250
GV+FM+ECV G +GCI+AD+MGLGKTLQ + L +TLL Q D KP + KAI+V+
Sbjct: 156 GVRFMYECVEG--KRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTISKAIVVS 213
Query: 251 PTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF---TDPCSSLQVLIVSYETF 307
P+SLV NWE E KW+ GR+ +A+ +++D ++ F T VL++SYETF
Sbjct: 214 PSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRTLEQFAMNTATRCGTPVLLISYETF 273
Query: 308 RMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR-------------------NDLEEFFA 348
R++S C ++ICDE HRLKN LT + NDL E+F+
Sbjct: 274 RLYSHIL-CKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFS 332
Query: 349 MVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTN 408
+VNF NP +LG + F+R +E +I+ G+ +T+ E++ +E++ EL VNQ I+RRTN
Sbjct: 333 LVNFVNPEMLGTGSDFKRNFENAILRGQNADSTDAERERALEKTQELVGLVNQCIIRRTN 392
Query: 409 ALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKK 466
+L+ +LP K VVC KLT +Q +LY +F+ S V+R++++ T ++ + LA IT LKK
Sbjct: 393 QILTKYLPVKFEMVVCAKLTAVQLQLYTNFLKSDQVRRSLADCTDKTTLTALADITTLKK 452
Query: 467 LCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLAR 526
LCNHP LIY+ I + GFE+ PP ++ D ELSGK +L
Sbjct: 453 LCNHPDLIYEKIAARE---KGFENSQNVLPP--------NYKPKD-VNPELSGKFMLLDF 500
Query: 527 LLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPS 586
+L +R +DD++VL+SNYTQTLDLF QL R+R+Y Y+RLDGT +I KR K+V+ FNDP+
Sbjct: 501 MLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFNDPA 560
Query: 587 KNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLS 646
+ F+F+LSSKAGGCGLNLIG NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR ++
Sbjct: 561 TDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVA 620
Query: 647 TGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706
+G+IEEK+ QRQ K+ L I D++ + + +DL+DLF F +V S+ H +
Sbjct: 621 SGSIEEKILQRQTHKKSLSSSI----IDNNDSAEKHFTRDDLKDLFRFEANVLSDTHNKL 676
Query: 707 HCTRC 711
C RC
Sbjct: 677 KCKRC 681
>sp|B3NAN8|RAD54_DROER DNA repair and recombination protein RAD54-like OS=Drosophila
erecta GN=okr PE=3 SV=1
Length = 784
Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/592 (44%), Positives = 382/592 (64%), Gaps = 49/592 (8%)
Query: 150 PPGVDPLVLWQP---EEPQNDGGN----LVPITVDPLLVRFLRPHQREGVQFMFECVSGL 202
P + LVL+ P E + G + LV + VDPLL LRPHQREGV+FM+ECV G
Sbjct: 115 PVACNALVLFHPPAYTEHERMGMDPSKVLVHVVVDPLLSNILRPHQREGVRFMYECVEG- 173
Query: 203 LNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262
+GCI+AD+MGLGKTLQ + L++TLL QG + KP + KAI+V+P+SLV NWE E
Sbjct: 174 -KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEF 232
Query: 263 KKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSL--QVLIVSYETFRMHSSKFSCSESC 320
KW+ GR+ + + T+++ + ++ F+ S L VL++SYETFR+++ + C
Sbjct: 233 TKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVLLISYETFRIYA-EILCKYEV 291
Query: 321 DLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDA 361
++ICDE HRLKN LT + NDL E++++VNF NP +LG A
Sbjct: 292 GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTA 351
Query: 362 AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIE 421
A F+R +E++I+ G+ +T+ E++ I ++ EL V+Q I+RRTN +L+ +LP K
Sbjct: 352 AVFKRNFESAILRGQNTDSTDAERQRAIAKTQELIGLVDQCIIRRTNQILTKYLPVKFEM 411
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIK 479
V+C KLT +Q ELY +F+ S V+R++++ +++ + LA IT LKK+C+HP LIY+ I
Sbjct: 412 VICAKLTSIQLELYTNFLKSDQVRRSLADCKEKASLTALADITTLKKICSHPNLIYEKIT 471
Query: 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
+ + GFE+ P ++ D ELSGK +L +L +R +D++
Sbjct: 472 ARD---KGFENSQNVLP--------SNYNAKDLN-PELSGKFMLLDFMLAAIRADGNDKV 519
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599
VL+SNYTQTLDLF QL R+R+Y ++RLDGT SI KR K+V+ FNDP + F+F+LSSKAG
Sbjct: 520 VLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAG 579
Query: 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659
GCGLNLIG NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR +++G+IEEK+ QRQ
Sbjct: 580 GCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQT 639
Query: 660 SKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC 711
K+ L I D++ + + +DL+DLFTF D+ S+ H+ + C RC
Sbjct: 640 HKKSLSSTI----IDNNESAEKHFTRDDLKDLFTFDADILSDTHDKLKCKRC 687
>sp|O76460|RAD54_DROME DNA repair and recombination protein RAD54-like OS=Drosophila
melanogaster GN=okr PE=1 SV=1
Length = 784
Score = 513 bits (1321), Expect = e-144, Method: Compositional matrix adjust.
Identities = 265/592 (44%), Positives = 383/592 (64%), Gaps = 49/592 (8%)
Query: 150 PPGVDPLVLWQP---EEPQNDGGN----LVPITVDPLLVRFLRPHQREGVQFMFECVSGL 202
P + LVL+ P E + G + LV + VDPLL LRPHQREGV+FM+ECV G
Sbjct: 115 PMACNALVLFHPPAYTEHERMGMDPTKVLVHVVVDPLLSNILRPHQREGVRFMYECVEG- 173
Query: 203 LNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262
+GCI+AD+MGLGKTLQ + L++TLL QG + KP + KAI+V+P+SLV NWE E
Sbjct: 174 -KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEF 232
Query: 263 KKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSL--QVLIVSYETFRMHSSKFSCSESC 320
KW+ GR+ + + T+++ + ++ F+ + L VL++SYETFR+++ + C
Sbjct: 233 TKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLISYETFRIYA-EILCKYEV 291
Query: 321 DLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDA 361
++ICDE HRLKN LT + NDL E++++VNF NP +LG A
Sbjct: 292 GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTA 351
Query: 362 AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIE 421
A F+R +E++I+ G+ +TE+E++ IE++ EL V+Q I+RRTN +L+ +LP K
Sbjct: 352 AVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEM 411
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIK 479
V+C KLT +Q ELY +F+ S V+R++++ +++ + LA IT LKK+C+HP LIY+ +
Sbjct: 412 VICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLT 471
Query: 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
+ GFE+ P ++ D ELSGK +L +L +R +D++
Sbjct: 472 ARE---KGFENSQNVLP--------SNYKPKDLN-PELSGKFMLLDFMLAAIRAEGNDKV 519
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599
VL+SNYTQTLDLF QL R+R+Y ++RLDGT SI KR K+V+ FNDP + F+F+LSSKAG
Sbjct: 520 VLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAG 579
Query: 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659
GCGLNLIG NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR +++G+IEEK+ QRQ
Sbjct: 580 GCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQT 639
Query: 660 SKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC 711
K+ L I D++ + + +DL+DLFTF ++ S+ H+ + C RC
Sbjct: 640 HKKSLSSTI----IDNNESAEKHFTRDDLKDLFTFDANILSDTHDKLKCKRC 687
>sp|B3MMA5|RAD54_DROAN DNA repair and recombination protein RAD54-like OS=Drosophila
ananassae GN=okr PE=3 SV=1
Length = 791
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 270/592 (45%), Positives = 377/592 (63%), Gaps = 49/592 (8%)
Query: 150 PPGVDPLVLWQP------EEPQNDGGN-LVPITVDPLLVRFLRPHQREGVQFMFECVSGL 202
P + LVL+QP E D LV + VDPLL LRPHQREGV+FM+ECV G
Sbjct: 118 PQACNALVLFQPPNYTEHERMSMDPSKVLVHVVVDPLLSNILRPHQREGVRFMYECVEG- 176
Query: 203 LNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262
+GCI+AD+MGLGKTLQ + L++TLL QG + KP + KAI+V+P+SLV NWE E
Sbjct: 177 -KKGDFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESKPTINKAIVVSPSSLVKNWEKEF 235
Query: 263 KKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSL--QVLIVSYETFRMHSSKFSCSESC 320
KW+ GR+ +A+ T+++ + ++ F+ S L VL++SYETFR+++ + C
Sbjct: 236 TKWLQGRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVLLISYETFRIYA-EILCKYEV 294
Query: 321 DLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDA 361
++ICDE HRLKN LT + NDL E+F++VNF NP +LG A
Sbjct: 295 GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTA 354
Query: 362 AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIE 421
A F+R +E SI+ G+ +TE E+K IE++ EL V+Q I+RRTN +L+ +LP K
Sbjct: 355 ADFKRNFENSILRGQNADSTEGERKKAIEKTQELIGLVDQCIIRRTNQILTKYLPIKFEM 414
Query: 422 VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKKLCNHPKLIYDTIK 479
V+C KLT +Q +LY +F++S V+R++++ +++ + LA IT LKK+C+HP LI+ I+
Sbjct: 415 VICVKLTAIQLQLYTNFLNSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIHQKIE 474
Query: 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
+ GFE+ P S E SGK +L +L +R +D++
Sbjct: 475 AKE---KGFENSQNVLP---------SNYKPKEICPEWSGKFMLLDFMLAAIRAAGNDKV 522
Query: 540 VLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599
VL+SNYTQTLDLF QL R+R+Y ++RLDGT SI KR K+V+ FNDP F+F+LSSKAG
Sbjct: 523 VLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSSKAG 582
Query: 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659
GCGLNLIG NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR +++GTIEEK+ QRQ
Sbjct: 583 GCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQRQT 642
Query: 660 SKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRC 711
K+ L I D++ + + +DL+DLF+F + S+ HE + C RC
Sbjct: 643 HKKSLSSTI----IDNNESSEKHFTRDDLKDLFSFDQKILSDTHEKLKCKRC 690
>sp|B4MX21|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila
willistoni GN=okr PE=3 SV=1
Length = 784
Score = 510 bits (1314), Expect = e-143, Method: Compositional matrix adjust.
Identities = 264/605 (43%), Positives = 384/605 (63%), Gaps = 50/605 (8%)
Query: 138 VENNVIEENFTLPPGVDPLVLWQP------EEPQNDGGN-LVPITVDPLLVRFLRPHQRE 190
V +++ P + LVL+ P E + D LV + VDPLL LRPHQRE
Sbjct: 100 VRRSIVRRALHDPQACNALVLYTPPVYSEHERMKMDPTKILVHVVVDPLLSNILRPHQRE 159
Query: 191 GVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250
GV+FM++CV G +GCI+AD+MGLGKTLQ + L++TLL Q + KP + KAIIV+
Sbjct: 160 GVRFMYDCVEG--KKGNFNGCIMADEMGLGKTLQCVTLVWTLLRQSCECKPTITKAIIVS 217
Query: 251 PTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS---LQVLIVSYETF 307
P+SLV NWE E KW+ GR+ +A+ +++D + ++ F+ S+ VL++SYETF
Sbjct: 218 PSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTIKALEQFSMNTSTRLGTPVLLISYETF 277
Query: 308 RMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR-------------------NDLEEFFA 348
R++++ C ++ICDE HRLKN LT + NDL E+F+
Sbjct: 278 RIYANIL-CQNEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFS 336
Query: 349 MVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTN 408
+VNF NP +LG AA F+R +E I+ G+ ++++E++ +E++ EL VNQ I+RRTN
Sbjct: 337 LVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDKERERALEKTQELIGLVNQCIIRRTN 396
Query: 409 ALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI--LAYITALKK 466
+L+ +LP K V+C +LT +Q E Y +F+ S V+R++++ +++ + LA IT LKK
Sbjct: 397 QILTKYLPVKFEMVICVRLTSVQLEFYTNFLKSDKVRRSLADCNEKASLTALADITTLKK 456
Query: 467 LCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLAR 526
LC+HP LIY+ + + + GFE+ P ++ D ELSGK +L
Sbjct: 457 LCSHPDLIYEKMLARD---KGFENSQNILP--------TNYKPKDLN-PELSGKFMLLDF 504
Query: 527 LLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPS 586
+L +R +DD++VL+SNYTQTLDLF QL R+R+Y ++RLDGT +I KR K+V+ FNDP
Sbjct: 505 MLATIRANSDDKVVLISNYTQTLDLFEQLARKRKYTFVRLDGTMTIKKRSKVVDRFNDPE 564
Query: 587 KNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLS 646
+ F+F+LSSKAGGCGLNLIG NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR ++
Sbjct: 565 NDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVA 624
Query: 647 TGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706
+G+IEEK+ QRQ K+ L I D++ + + +DL+DLF+F + S+ HE +
Sbjct: 625 SGSIEEKILQRQTHKKSLSSTI----IDNNESAEKHFTRDDLKDLFSFDSKILSDTHEKL 680
Query: 707 HCTRC 711
C RC
Sbjct: 681 KCKRC 685
>sp|O12944|RAD54_CHICK DNA repair and recombination protein RAD54-like (Fragment)
OS=Gallus gallus GN=RAD54L PE=2 SV=1
Length = 733
Score = 509 bits (1311), Expect = e-143, Method: Compositional matrix adjust.
Identities = 286/648 (44%), Positives = 390/648 (60%), Gaps = 91/648 (14%)
Query: 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDG 239
L R LRPHQREGV+F+++CV+ G HGCI+AD+MGLGKTLQ I L++TLL Q D
Sbjct: 138 LSRVLRPHQREGVKFLWDCVTSR-RIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDC 196
Query: 240 KPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDV----VSGIDSFTDPCS 295
KP ++KA++V+P+SLV NW E++KW+GGR+Q +A+ +++++ V ++
Sbjct: 197 KPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQPLAIDGGSKEEIDRKLVGSMNQRGLRVP 256
Query: 296 SLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR--------------- 340
S +LI+SYETFR+H+ S L+ICDE HRLKN + T +
Sbjct: 257 S-PILIISYETFRLHAEALQ-KGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRVLISG 314
Query: 341 ----NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELS 396
NDL E+F++V+F N GILG A F+R++E I+ GR+ A+E E++ G ER EL
Sbjct: 315 TPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELI 374
Query: 397 AKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSK 456
+ VN+ ++RRT+ +LS +LP KI +VVCC+LTPLQ+ELY +F+ K K EE K+ K
Sbjct: 375 SIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQAELYKNFL--KQAKPV--EELKEGK 430
Query: 457 I----LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDG 512
I L+ IT+LKKLCNHP LIYD G G D P +S +S
Sbjct: 431 INVSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDLF----PAGYSTKS-------- 478
Query: 513 AWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSI 572
+LSGKM VL +L + ++D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT SI
Sbjct: 479 VEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSI 538
Query: 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWR 632
KR K+V FN PS EF+F+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA ARVWR
Sbjct: 539 KKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWR 598
Query: 633 DGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF 692
DGQKK +IYR LSTGTIEEK++QRQ K+ L + E+ D S +L++LF
Sbjct: 599 DGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVE----RHFSLGELKELF 654
Query: 693 TFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGC 752
+ ++ S+ H+ + C RC N
Sbjct: 655 SLNETTISDTHDKIKCRRCVNG-------------------------------------- 676
Query: 753 LHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVF 800
H+++ + G+ DL+ W H + D++L+A+ VTF F
Sbjct: 677 -HQVRPPPE--GSDCTSDLSQWNHCADKRGLQDSVLKAAWDAAVTFTF 721
>sp|B4GS98|RAD54_DROPE DNA repair and recombination protein RAD54-like OS=Drosophila
persimilis GN=okr PE=3 SV=1
Length = 782
Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/565 (45%), Positives = 368/565 (65%), Gaps = 42/565 (7%)
Query: 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
LV + VDPLL LRPHQREGV+FM+ECV G +GCI+AD+MGLGKTLQ +AL++
Sbjct: 139 LVHVVVDPLLSNILRPHQREGVRFMYECVEG--KRGNFNGCIMADEMGLGKTLQCVALVW 196
Query: 231 TLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290
TLL Q + KP + K IIV+P+SLV NWE E KW+ GR+ +A+ ++++ V ++ F
Sbjct: 197 TLLKQSAECKPTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQF 256
Query: 291 TDPCSS---LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR------- 340
+ S+ VL++SYETFR+++ + C ++ICDE HRLKN LT +
Sbjct: 257 SMNASTRLGTPVLLISYETFRIYA-EILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKT 315
Query: 341 ------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG 388
NDL E+F++VNF NP +LG AA F+R +E I+ G+ +T++E+
Sbjct: 316 KRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRA 375
Query: 389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI 448
+E++ EL V+Q I+RRTN +L+ +LP K V+C KLTP+Q +LY +F+ S V+R++
Sbjct: 376 LEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQVRRSL 435
Query: 449 SEETKQSKI--LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGS 506
++ +++ + LA IT LKKLC+HP LI + I +G GFE+ P +
Sbjct: 436 ADCKEKASLTALADITTLKKLCSHPNLICEKIAAGE---KGFENSQNILPI--------N 484
Query: 507 WTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRL 566
+ ELSGK +L +L +R +D++VL+SNYTQTLDLF L R+R+Y ++RL
Sbjct: 485 YNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFELLARKRKYGFVRL 544
Query: 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQA 626
DGT SI KR K+V+ FNDP + F+F+LSSKAGGCGLNLIG NRL +FDPDWNPAND+QA
Sbjct: 545 DGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQA 604
Query: 627 AARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTE 686
ARVWRDGQKK +IYR +++G+IEEK+ QRQ K+ L I D++ + + +
Sbjct: 605 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTI----IDNNESAEKHFTRD 660
Query: 687 DLRDLFTFHDDVRSEIHENMHCTRC 711
DL+DLF+F D+ S+ H+ + C RC
Sbjct: 661 DLKDLFSFDPDILSDTHDKLKCKRC 685
>sp|Q29KH2|RAD54_DROPS DNA repair and recombination protein RAD54-like OS=Drosophila
pseudoobscura pseudoobscura GN=okr PE=3 SV=2
Length = 782
Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/565 (45%), Positives = 368/565 (65%), Gaps = 42/565 (7%)
Query: 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
LV + VDPLL LRPHQREGV+FM+ECV G +GCI+AD+MGLGKTLQ +AL++
Sbjct: 139 LVHVVVDPLLSNILRPHQREGVRFMYECVEG--KRGNFNGCIMADEMGLGKTLQCVALVW 196
Query: 231 TLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290
TLL Q + KP + K IIV+P+SLV NWE E KW+ GR+ +A+ ++++ V ++ F
Sbjct: 197 TLLKQSAECKPTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQF 256
Query: 291 TDPCSS---LQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR------- 340
+ S+ VL++SYETFR+++ + C ++ICDE HRLKN LT +
Sbjct: 257 SMNASTRLGTPVLLISYETFRIYA-EILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKT 315
Query: 341 ------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG 388
NDL E+F++VNF NP +LG AA F+R +E I+ G+ +T++E+
Sbjct: 316 KRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRA 375
Query: 389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI 448
+E++ EL V+Q I+RRTN +L+ +LP K V+C KLTP+Q +LY +F+ S V+R++
Sbjct: 376 LEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQVRRSL 435
Query: 449 SEETKQSKI--LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGS 506
++ +++ + LA IT LKKLC+HP LI + I + GFE+ P +
Sbjct: 436 ADCKEKASLTALADITTLKKLCSHPNLICEKIAAEE---KGFENSQNILPI--------N 484
Query: 507 WTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRL 566
+ ELSGK +L +L +R +D++VL+SNYTQTLDLF QL R+R+Y ++RL
Sbjct: 485 YNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFEQLARKRKYGFVRL 544
Query: 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQA 626
DGT SI KR K+V+ FNDP + F+F+LSSKAGGCGLNLIG NRL +FDPDWNPAND+QA
Sbjct: 545 DGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQA 604
Query: 627 AARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTE 686
ARVWRDGQKK +IYR +++G+IEEK+ QRQ K+ L I D++ + + +
Sbjct: 605 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTI----IDNNESAEKHFTRD 660
Query: 687 DLRDLFTFHDDVRSEIHENMHCTRC 711
DL+DLF+F D+ S+ H+ + C RC
Sbjct: 661 DLKDLFSFDPDILSDTHDKLKCKRC 685
>sp|B4JCS7|RAD54_DROGR DNA repair and recombination protein RAD54-like OS=Drosophila
grimshawi GN=okr PE=3 SV=1
Length = 786
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 266/605 (43%), Positives = 376/605 (62%), Gaps = 50/605 (8%)
Query: 138 VENNVIEENFTLPPGVDPLVLWQP------EEPQNDGGNL-VPITVDPLLVRFLRPHQRE 190
V +++ P + LVL+ P E D L V + VDPLL LRPHQRE
Sbjct: 96 VRRSIVRRALHDPLACNALVLFTPPVYTEHERMSLDPSKLQVHVVVDPLLSNVLRPHQRE 155
Query: 191 GVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250
GV+FM+ECV G +GCI+AD+MGLGKTLQ + L +TLL Q D KP + KAI+V+
Sbjct: 156 GVRFMYECVEG--KRGSFNGCIMADEMGLGKTLQCVTLTWTLLRQSADCKPTISKAIVVS 213
Query: 251 PTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS---LQVLIVSYETF 307
P+SLV NWE E KW+ GR+ +A+ ++++ ++ F S+ VL++SYETF
Sbjct: 214 PSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEETTRTLEQFAMNTSTRCGTPVLLISYETF 273
Query: 308 RMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR-------------------NDLEEFFA 348
R+++ C ++ICDE HRLKN LT + NDL E+F+
Sbjct: 274 RLYAHIL-CKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFS 332
Query: 349 MVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTN 408
+VNF NP +LG A F+R +E +I+ G+ +T+ E++ + ++ EL VNQ I+RRTN
Sbjct: 333 LVNFVNPEMLGTATDFKRNFENAILRGQNADSTDTERERALLKTQELIGLVNQCIIRRTN 392
Query: 409 ALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAY--ITALKK 466
+L+ +LP K VVC KLT +Q ++Y +F+ S V R++++ +++ + A IT LKK
Sbjct: 393 QILTKYLPVKFEMVVCAKLTAVQLQIYTNFLKSDQVCRSLADCNEKTSLTALSDITTLKK 452
Query: 467 LCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLAR 526
LCNHP LIY+ + + G FE+ P ++ D ELSGK +L
Sbjct: 453 LCNHPDLIYEKLAAREKG---FENSQNVLP--------ANYKPKDIN-PELSGKFMLLDF 500
Query: 527 LLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPS 586
+L +R +DD++VL+SNYTQTLDLF QL R+R+Y Y+RLDGT +I KR K+V+ FNDPS
Sbjct: 501 MLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFNDPS 560
Query: 587 KNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLS 646
+ F+F+LSSKAGGCGLNLIG NRL +FDPDWNPAND+QA ARVWRDGQKK +IYR ++
Sbjct: 561 SDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVA 620
Query: 647 TGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706
+G+IEEK+ QRQ K+ L I D++ + + +DL+DLF+F +V S+ H +
Sbjct: 621 SGSIEEKILQRQTHKKSLSSTI----IDNNESVEKHFTRDDLKDLFSFEANVLSDTHNKL 676
Query: 707 HCTRC 711
C RC
Sbjct: 677 KCKRC 681
>sp|P41410|RAD54_SCHPO DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp54 PE=1 SV=2
Length = 852
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 267/579 (46%), Positives = 352/579 (60%), Gaps = 54/579 (9%)
Query: 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
V + +DP L R LRPHQ EGV+F+++CV+G ++ +GCI+AD+MGLGKTLQ IALL+T
Sbjct: 252 VAVVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCA-NGCIMADEMGLGKTLQCIALLWT 310
Query: 232 LLCQGFD-GKPMVKKAIIVTPTSLVSNWEAEIKKWVG--GRVQLIALCESTRDDVVSGID 288
LL Q GKP ++KAII P+SLV NW E+ KW+G I +S++ +++ +
Sbjct: 311 LLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQ 370
Query: 289 SFTDPCS---SLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTN------ 339
+ + VLI SYET R + + +E +L+CDE HRLKN +LT
Sbjct: 371 QWASVHGRQVTRPVLIASYETLRSYVEHLNNAE-IGMLLCDEGHRLKNSDSLTFTALDKL 429
Query: 340 -------------RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKK 386
+NDL E+F+++NF NPG+LG FR+ YE I+ GR+ TE++K+
Sbjct: 430 NVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKE 489
Query: 387 LGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKR 446
G + +EL+ VN+FI+RRTN +LS +LP K VV C L+ Q LY HFI S + +
Sbjct: 490 NGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEINK 549
Query: 447 AISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEM----FSG 502
+ Q L I LKK+CNHP L+ T E C FPP G
Sbjct: 550 ILRGTGSQP--LKAIGLLKKICNHPDLLN--------LTEDLEGCEALFPPGFIPRELRG 599
Query: 503 RSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP 562
R + LSGKM VL R+L ++Q TDD+IVL+SNYT TLDLF QLCR R Y
Sbjct: 600 RDRNIDSS------LSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYK 653
Query: 563 YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAN 622
LRLDGT +++KRQ+LV+ FNDP K+ FVFLLSSKAGGCG+NLIG NRL+LFDPDWNPA
Sbjct: 654 ALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAA 713
Query: 623 DKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNF 682
D+QA ARVWRDGQKK F+YRF++TGTIEEK++QRQ K+ L + E D
Sbjct: 714 DQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVE----RH 769
Query: 683 LSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESI 721
S ++LR LF +D E HE C RC+ DG + I
Sbjct: 770 FSLDNLRQLFQLNDHTVCETHETYKCKRCR---DGKQFI 805
>sp|Q9Y620|RA54B_HUMAN DNA repair and recombination protein RAD54B OS=Homo sapiens
GN=RAD54B PE=1 SV=1
Length = 910
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 254/577 (44%), Positives = 353/577 (61%), Gaps = 69/577 (11%)
Query: 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
LV + +DP LV LRPHQ+EG+ F++ECV G+ G G ILAD+MGLGKTLQ I+L++
Sbjct: 283 LVDVVIDPYLVYHLRPHQKEGIIFLYECVMGM-RMNGRCGAILADEMGLGKTLQCISLIW 341
Query: 231 TLLCQG-FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGID 288
TL CQG + GKP++KK +IVTP SLV+NW+ E +KW+G R+++ + D ++
Sbjct: 342 TLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTV------DQDHKVE 395
Query: 289 SFTDPCSSLQVLIVSYETF-----RMHSSKFSCSESCDLLICDEAHRLKNDQTLTN---- 339
F VLI+SYE ++ + KF DLLICDE HRLKN T
Sbjct: 396 EFIKSIF-YSVLIISYEMLLRSLDQIKNIKF------DLLICDEGHRLKNSAIKTTTALI 448
Query: 340 ---------------RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEE 384
+NDL+EFFA+++F NPGILG + +R+ YE II REP+A+EEE
Sbjct: 449 SLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEE 508
Query: 385 KKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV 444
K+LG R++EL+ FILRRT +++ +LPPKI VV C+ LQ ELY ++S+ V
Sbjct: 509 KELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV 568
Query: 445 KRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTG--------FEDCIRFFP 496
+ + + S L I ALKKLCNHP L++++IK +T ++ + FP
Sbjct: 569 RFCLQGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFP 628
Query: 497 ----PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDL 551
P +F+ + SGK+ VL++LL + + R +++VLVSNYTQTL++
Sbjct: 629 ADYNPLLFTEKE-------------SGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNI 675
Query: 552 FAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRL 611
++C+ Y Y RLDG T IS+RQ++V+ FN + F+FLLSSKAGG GLNLIGG+ L
Sbjct: 676 LQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHL 735
Query: 612 VLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
+L+D DWNPA D QA +RVWRDGQK V IYR L+TGTIEEK+YQRQ+SK+GL +
Sbjct: 736 ILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDL 795
Query: 672 QTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHC 708
S Q S E+L++LFT H+ H+ + C
Sbjct: 796 TKTSEHIQ---FSVEELKNLFTLHESSDCVTHDLLDC 829
>sp|Q6PFE3|RA54B_MOUSE DNA repair and recombination protein RAD54B OS=Mus musculus
GN=Rad54b PE=2 SV=1
Length = 886
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 252/602 (41%), Positives = 359/602 (59%), Gaps = 41/602 (6%)
Query: 150 PPGVDPLVLWQPEEPQNDGGN-----LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLN 204
P + LV+ +P+E N +V + +DP LV LRPHQ++G+ F++ECV G+
Sbjct: 235 PCTPNALVMPRPDENHQRMFNRHCSPIVDVVIDPHLVHHLRPHQKDGIIFLYECVMGM-R 293
Query: 205 AAGIHGCILADDMGLGKTLQSIALLYTLLCQG-FDGKPMVKKAIIVTPTSLVSNWEAEIK 263
A G G ILAD+MGLGKTLQ I+L++TL CQG + GKP++KK +IVTP SLV+NW E +
Sbjct: 294 AVGKCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWRKEFQ 353
Query: 264 KWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDL 322
KW+G R+++ + D ++ F + + VLI+SYE + + L
Sbjct: 354 KWLGSERIKIFTV------DQDHKVEEFINS-TFHSVLIISYEMLLRSLDQIK-TIPFGL 405
Query: 323 LICDEAHRLKNDQTLTN-------------------RNDLEEFFAMVNFTNPGILGDAAY 363
LICDE HRLKN T +NDL+EFFA+V+F NPGILG +
Sbjct: 406 LICDEGHRLKNSSIKTTTALSSLSCEKTVILTGTPVQNDLQEFFALVDFVNPGILGSLSS 465
Query: 364 FRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVV 423
+R+ YE II REP++++EE++LG R++EL+ +FILRRT +++ +LPPKI VV
Sbjct: 466 YRKIYEEPIIISREPSSSKEERELGERRATELTRLTGRFILRRTQEVINKYLPPKIENVV 525
Query: 424 CCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNP 483
C+ LQ ELY + S++V+ + + S L I ALKKLCNHP L++ ++K
Sbjct: 526 FCRPGALQIELYRKLLRSQSVRFCLQGLLENSAHLICIGALKKLCNHPCLLFSSVKGKEF 585
Query: 484 GTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ-RTDDRIVLV 542
++ E+ R + S + + E SGK+ VL +LL + + R ++++LV
Sbjct: 586 SSSCEENEERNLCQGLLSVFPAGYNPLQFSEEE-SGKLQVLVKLLAVIHELRPTEKVILV 644
Query: 543 SNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCG 602
SNY QTL++ ++C+ Y RLDG T +S+RQ +V+ FN +F+FLLSSKAGG G
Sbjct: 645 SNYRQTLNVLEEVCKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVG 704
Query: 603 LNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKE 662
LNLIGG+ L+L+D DWNPA D QA +RVWRDGQK V IYR L+TGTIEEK+YQRQ+SK+
Sbjct: 705 LNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQ 764
Query: 663 GLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIG 722
GL + S Q S E+L++LFT H+ H+ + C C E
Sbjct: 765 GLSGAVVDLTRSSEHIQ---FSVEELKNLFTLHESSHCVTHDLLDC-ECTGEKGHTEDAS 820
Query: 723 EG 724
EG
Sbjct: 821 EG 822
>sp|P32863|RAD54_YEAST DNA repair and recombination protein RAD54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAD54 PE=1
SV=1
Length = 898
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 250/604 (41%), Positives = 343/604 (56%), Gaps = 83/604 (13%)
Query: 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLL---------------------------- 203
VP+ +DP L + LRPHQ EGV+F++ CV+GL+
Sbjct: 259 VPVVIDPKLAKILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTES 318
Query: 204 -----NAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258
N G +GCI+AD+MGLGKTLQ IAL++TLL QG GK ++ K IIV P+SLV+NW
Sbjct: 319 QKTEQNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNW 378
Query: 259 EAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ----------VLIVSYETFR 308
E+ KW+G + + + G + + + VLI+SYET R
Sbjct: 379 ANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLR 438
Query: 309 MHSSKFSCSESCD--LLICDEAHRLKNDQTLTN-------------------RNDLEEFF 347
+ + ++C+ L++ DE HRLKN +LT +NDL E+F
Sbjct: 439 RNVDQL---KNCNVGLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYF 495
Query: 348 AMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRT 407
A+++F+NPG+LG A FR+ +E I+ GR+ AT++E G + +LS V++FI+RRT
Sbjct: 496 ALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRRT 555
Query: 408 NALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKL 467
N +L+ +LP K V+ L PLQ+ELYN I S+ VK+ + S+ L I LKKL
Sbjct: 556 NDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKV-VKGVGGSQPLRAIGILKKL 614
Query: 468 CNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARL 527
CNHP L+ + + D + + S K +L R
Sbjct: 615 CNHPNLLNFEDEFDDEDDLELPDDYNM-----------PGSKARDVQTKYSAKFSILERF 663
Query: 528 LGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSK 587
L ++ +DD+IVL+SNYTQTLDL ++CR + Y +RLDGT SI+KRQKLV+ FNDP
Sbjct: 664 LHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDPEG 723
Query: 588 NEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLST 647
EF+FLLSSKAGGCG+NLIG NRL+L DPDWNPA D+QA ARVWRDGQKK FIYRF+ST
Sbjct: 724 QEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFIST 783
Query: 648 GTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMH 707
GTIEEK++QRQ K L + D+ S+++LR LF +++ E HE H
Sbjct: 784 GTIEEKIFQRQSMKMSLSSCV----VDAKEDVERLFSSDNLRQLFQKNENTICETHETYH 839
Query: 708 CTRC 711
C RC
Sbjct: 840 CKRC 843
>sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus
GN=RAD54B PE=2 SV=1
Length = 918
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/564 (43%), Positives = 343/564 (60%), Gaps = 55/564 (9%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDG-KPM 242
LRPHQREG+ F++ECV G+ +G G ILAD+MGLGKTLQ I+L++TLL QG G KP+
Sbjct: 303 LRPHQREGIVFLYECVMGM-RVSGRFGAILADEMGLGKTLQCISLVWTLLRQGVYGCKPV 361
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGIDSF-TDPCSSLQVL 300
+K+A+IVTP SLV NW+ E +KW+G R+++ + D ++ F + P S V+
Sbjct: 362 LKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTV------DQDHKVEEFISSPLYS--VM 413
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQ-----TLTN--------------RN 341
I+SYE + E +LLICDE HRLKN LTN +N
Sbjct: 414 IISYEMLLRSLDQIQAIEF-NLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQN 472
Query: 342 DLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
DL+EF+A++ F NPG+LG + +R+ YE I+ REP+AT+EEK LG +R++EL+
Sbjct: 473 DLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAELTRLTGL 532
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYI 461
FILRRT +++ LPPK ++ C+ T LQ ELY + S+ + + + S L I
Sbjct: 533 FILRRTQEVINKFLPPKKENIIFCQPTALQLELYRKLLSSRVISSCLQGRLENSPHLICI 592
Query: 462 TALKKLCNHPKLIYDTIKSG--------NPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGA 513
ALKKLCNHP L++ +K + ++ +E FP + +T +
Sbjct: 593 GALKKLCNHPCLLFKALKEKCCDPKSDEHVESSLYEGLTDVFPQD--------YTSDTFS 644
Query: 514 WVELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSI 572
++ SGK+ VL +LL +R+ + +R+VLVSNYTQTL++ + C+ Y Y RLDG T +
Sbjct: 645 EID-SGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPV 703
Query: 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWR 632
S+RQ++V+ FN F+FLLSSKAGG GLNL+G + L+L+D DWNPA D QA ARVWR
Sbjct: 704 SQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWR 763
Query: 633 DGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNF-LSTEDLRDL 691
DGQK V IYR L+TGTIEEK+YQRQ+SK+ L + D S T + S E+LR+L
Sbjct: 764 DGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAV----VDLSKTSEHIHFSVEELRNL 819
Query: 692 FTFHDDVRSEIHENMHCTRCQNYD 715
FT H++ H+ + C N D
Sbjct: 820 FTLHENSSCVTHDLLECDCMGNKD 843
>sp|C7GQI8|RDH54_YEAS2 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain JAY291) GN=RDH54 PE=3 SV=1
Length = 924
Score = 348 bits (892), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 227/629 (36%), Positives = 330/629 (52%), Gaps = 85/629 (13%)
Query: 134 LPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQ 193
+P+T +N+ ++ + P D + P + V + VDPLL +FLRPHQREGV+
Sbjct: 215 VPKTSQNSKAKKYY---PVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVK 271
Query: 194 FMFECVSGLL-------------------NAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
FM++C+ GL N + I GC+LADDMGLGKTL SI L++TL+
Sbjct: 272 FMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIR 331
Query: 235 Q------------GFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVG-GRVQLIALCESTRD 281
Q G + KK ++V P +L+ NW+ E KW+ R+ ++ L
Sbjct: 332 QTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSP 391
Query: 282 DV-VSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSES-CDLLICDEAHRLKNDQT--- 336
D+ + +F + QVLI+ YE S + ++ D+L+CDE HRLKN +
Sbjct: 392 DMDKMAVRNFLKVQRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKIL 451
Query: 337 -------------LTN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPT- 379
LT +NDL EFF +++F NPGILG A F+R + I R+
Sbjct: 452 NTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTAN 511
Query: 380 -ATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHF 438
EE K G ERS E+ +FILRRTNA+L +LPPK ++ CK Q +
Sbjct: 512 RYNEELLKKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDI 571
Query: 439 IHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498
+ + + S L IT LKK+CN P L+ +P ++ I+ +
Sbjct: 572 LQGARLDFG---QLTFSSSLGLITLLKKVCNSPGLV-----GSDPY---YKSHIKDTQSQ 620
Query: 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE 558
RS + SGK+ VL LL +R+ T +++V+VSNYTQTLD+ L
Sbjct: 621 DSYSRSLN-----------SGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNM 669
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
+ RLDG+ +R +V FN +P+ F FLLS+K+GG GLNL+G +RL+LFD D
Sbjct: 670 AGMSHCRLDGSIPAKQRDSIVTSFNRNPAI--FGFLLSAKSGGVGLNLVGASRLILFDND 727
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVI-QQEQTDS 675
WNP+ D QA +R+ RDGQKK FIYR ++TG I+EK+ QRQ+ K L QK + E +
Sbjct: 728 WNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNK 787
Query: 676 SATQGNFLSTEDLRDLFTFHDDVRSEIHE 704
++ + + EDL+DLF+ H D +S H+
Sbjct: 788 ESSNDDLFNKEDLKDLFSVHTDTKSNTHD 816
>sp|A6ZL17|RDH54_YEAS7 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain YJM789) GN=RDH54 PE=3 SV=1
Length = 924
Score = 347 bits (889), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 226/629 (35%), Positives = 330/629 (52%), Gaps = 85/629 (13%)
Query: 134 LPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQ 193
+P+T +N+ ++ + P D + P + V + VDPLL +FLRPHQREGV+
Sbjct: 215 VPKTSQNSKAKKYY---PVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVK 271
Query: 194 FMFECVSGLL-------------------NAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
FM++C+ GL N + I GC+LADDMGLGKTL SI L++TL+
Sbjct: 272 FMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIR 331
Query: 235 Q------------GFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVG-GRVQLIALCESTRD 281
Q G + KK ++V P +L+ NW+ E KW+ R+ ++ L
Sbjct: 332 QTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSP 391
Query: 282 DV-VSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSES-CDLLICDEAHRLKNDQT--- 336
D+ + +F + QVLI+ YE S + ++ D+L+CDE HRLKN +
Sbjct: 392 DMDKMAVRNFLKVQRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKIL 451
Query: 337 -------------LTN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTA 380
LT +NDL EFF +++F NPGILG A F+R + I R+
Sbjct: 452 NTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTAN 511
Query: 381 TEEEKKL--GIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHF 438
E+ L G ERS E+ +FILRRTNA+L +LPPK ++ CK Q +
Sbjct: 512 RYNEELLEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDI 571
Query: 439 IHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498
+ + + S L IT LKK+CN P L+ +P ++ I+ +
Sbjct: 572 LQGARLDFG---QLTFSSSLGLITLLKKVCNSPGLV-----GSDPY---YKSHIKDTQSQ 620
Query: 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE 558
RS + SGK+ VL LL +R+ T +++V+VSNYTQTLD+ L
Sbjct: 621 DSYSRSLN-----------SGKLRVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNM 669
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
+ RLDG+ +R +V FN +P+ F FLLS+K+GG GLNL+G +RL+LFD D
Sbjct: 670 AGMSHCRLDGSIPAKQRDSIVTSFNRNPAI--FGFLLSAKSGGVGLNLVGASRLILFDND 727
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVI-QQEQTDS 675
WNP+ D QA +R+ RDGQKK FIYR ++TG I+EK+ QRQ+ K L QK + E +
Sbjct: 728 WNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNK 787
Query: 676 SATQGNFLSTEDLRDLFTFHDDVRSEIHE 704
++ + + EDL+DLF+ H D +S H+
Sbjct: 788 ESSNDDLFNKEDLKDLFSVHTDTKSNTHD 816
>sp|P38086|RDH54_YEAST DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RDH54 PE=1
SV=4
Length = 958
Score = 347 bits (889), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 226/629 (35%), Positives = 330/629 (52%), Gaps = 85/629 (13%)
Query: 134 LPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQ 193
+P+T +N+ ++ + P D + P + V + VDPLL +FLRPHQREGV+
Sbjct: 249 VPKTSQNSKAKKYY---PVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVK 305
Query: 194 FMFECVSGLL-------------------NAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
FM++C+ GL N + I GC+LADDMGLGKTL SI L++TL+
Sbjct: 306 FMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIR 365
Query: 235 Q------------GFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVG-GRVQLIALCESTRD 281
Q G + KK ++V P +L+ NW+ E KW+ R+ ++ L
Sbjct: 366 QTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSP 425
Query: 282 DV-VSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSES-CDLLICDEAHRLKNDQT--- 336
D+ + +F + QVLI+ YE S + ++ D+L+CDE HRLKN +
Sbjct: 426 DMDKMAVRNFLKVQRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKIL 485
Query: 337 -------------LTN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTA 380
LT +NDL EFF +++F NPGILG A F+R + I R+
Sbjct: 486 NTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTAN 545
Query: 381 TEEEKKL--GIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHF 438
E+ L G ERS E+ +FILRRTNA+L +LPPK ++ CK Q +
Sbjct: 546 RYNEELLEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDI 605
Query: 439 IHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498
+ + + S L IT LKK+CN P L+ +P ++ I+ +
Sbjct: 606 LQGARLDFG---QLTFSSSLGLITLLKKVCNSPGLV-----GSDPY---YKSHIKDTQSQ 654
Query: 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE 558
RS + SGK+ VL LL +R+ T +++V+VSNYTQTLD+ L
Sbjct: 655 DSYSRSLN-----------SGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNM 703
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
+ RLDG+ +R +V FN +P+ F FLLS+K+GG GLNL+G +RL+LFD D
Sbjct: 704 AGMSHCRLDGSIPAKQRDSIVTSFNRNPAI--FGFLLSAKSGGVGLNLVGASRLILFDND 761
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVI-QQEQTDS 675
WNP+ D QA +R+ RDGQKK FIYR ++TG I+EK+ QRQ+ K L QK + E +
Sbjct: 762 WNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNK 821
Query: 676 SATQGNFLSTEDLRDLFTFHDDVRSEIHE 704
++ + + EDL+DLF+ H D +S H+
Sbjct: 822 ESSNDDLFNKEDLKDLFSVHTDTKSNTHD 850
>sp|B3LN76|RDH54_YEAS1 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain RM11-1a) GN=RDH54 PE=3 SV=1
Length = 924
Score = 346 bits (887), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 226/629 (35%), Positives = 329/629 (52%), Gaps = 85/629 (13%)
Query: 134 LPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQ 193
+P+T +N+ ++ + P D + P + V + VDPLL +FLRPHQREGV+
Sbjct: 215 VPKTSQNSKAKKYY---PVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVK 271
Query: 194 FMFECVSGLL-------------------NAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
FM++C+ GL N + I GC+LADDMGLGKTL SI L++TL+
Sbjct: 272 FMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIR 331
Query: 235 Q------------GFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVG-GRVQLIALCESTRD 281
Q G + KK ++V P +L+ NW+ E KW+ R+ ++ L
Sbjct: 332 QTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSP 391
Query: 282 DV-VSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSES-CDLLICDEAHRLKNDQT--- 336
D+ + +F + QVLI+ YE S + ++ D+L+CDE HRLKN +
Sbjct: 392 DMDKMAVRNFLKVQRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKIL 451
Query: 337 -------------LTN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTA 380
LT +NDL EFF +++F NPGILG A F+R + I R+
Sbjct: 452 NTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTAN 511
Query: 381 TEEEKKL--GIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHF 438
E+ L G ERS E+ +FILRRTNA+L +LPPK ++ CK Q +
Sbjct: 512 RYNEELLEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDI 571
Query: 439 IHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498
+ + S L IT LKK+CN P L+ +P ++ I+ +
Sbjct: 572 LQGARLDFG---RLTFSSSLGLITLLKKVCNSPGLV-----GSDPY---YKSHIKDTQSQ 620
Query: 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE 558
RS + SGK+ VL LL +R+ T +++V+VSNYTQTLD+ L
Sbjct: 621 DSYSRSLN-----------SGKLRVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNM 669
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
+ RLDG+ +R +V FN +P+ F FLLS+K+GG GLNL+G +RL+LFD D
Sbjct: 670 AGMSHCRLDGSIPAKQRDSIVTSFNRNPAI--FGFLLSAKSGGVGLNLVGASRLILFDND 727
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVI-QQEQTDS 675
WNP+ D QA +R+ RDGQKK FIYR ++TG I+EK+ QRQ+ K L QK + E +
Sbjct: 728 WNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNK 787
Query: 676 SATQGNFLSTEDLRDLFTFHDDVRSEIHE 704
++ + + EDL+DLF+ H D +S H+
Sbjct: 788 ESSNDDLFNKEDLKDLFSVHTDTKSNTHD 816
>sp|B5VE38|RDH54_YEAS6 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=RDH54 PE=3 SV=1
Length = 924
Score = 345 bits (885), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 226/629 (35%), Positives = 329/629 (52%), Gaps = 85/629 (13%)
Query: 134 LPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQ 193
+P+T +N+ ++ + P D + P + V + VDPLL +FLRPHQREGV+
Sbjct: 215 VPKTSQNSKAKKYY---PVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVK 271
Query: 194 FMFECVSGLL-------------------NAAGIHGCILADDMGLGKTLQSIALLYTLLC 234
FM++C+ GL N + I GC+LADDMGLGKTL SI L++TL+
Sbjct: 272 FMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIR 331
Query: 235 Q------------GFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVG-GRVQLIALCESTRD 281
Q G + KK ++V P +L+ NW+ E KW+ R+ ++ L
Sbjct: 332 QTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSP 391
Query: 282 DV-VSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSES-CDLLICDEAHRLKNDQT--- 336
D+ + +F QVLI+ YE S + ++ D+L+CDE HRLKN +
Sbjct: 392 DMDKMAVRNFLKVQRIYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKIL 451
Query: 337 -------------LTN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTA 380
LT +NDL EFF +++F NPGILG A F+R + I R+
Sbjct: 452 NTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTAN 511
Query: 381 TEEEKKL--GIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHF 438
E+ L G ERS E+ +FILRRTNA+L +LPPK ++ CK Q +
Sbjct: 512 RYNEELLEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDI 571
Query: 439 IHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498
+ + + S L IT LKK+CN P L+ +P ++ I+ +
Sbjct: 572 LQGARLDFG---QLTFSSSLGLITLLKKVCNSPGLV-----GSDPY---YKSHIKDTQSQ 620
Query: 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE 558
RS + SGK+ VL LL +R+ T +++V+VSNYTQTLD+ L
Sbjct: 621 DSYSRSLN-----------SGKLRVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNM 669
Query: 559 RRYPYLRLDGTTSISKRQKLVNHFN-DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617
+ RLDG+ +R +V FN +P+ F FLLS+K+GG GLNL+G +RL+LFD D
Sbjct: 670 AGMSHCRLDGSIPAKQRDSIVTSFNRNPAI--FGFLLSAKSGGVGLNLVGASRLILFDND 727
Query: 618 WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVI-QQEQTDS 675
WNP+ D QA +R+ RDGQKK FIYR ++TG I+EK+ QRQ+ K L QK + E +
Sbjct: 728 WNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNK 787
Query: 676 SATQGNFLSTEDLRDLFTFHDDVRSEIHE 704
++ + + EDL+DLF+ H D +S H+
Sbjct: 788 ESSNDDLFNKEDLKDLFSVHTDTKSNTHD 816
>sp|Q09772|RDH54_SCHPO Meiotic recombination protein rdh54 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rdh54 PE=1 SV=3
Length = 811
Score = 311 bits (797), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 203/570 (35%), Positives = 297/570 (52%), Gaps = 63/570 (11%)
Query: 150 PPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIH 209
P + LV+ +P+ D V + +DP L + L HQREGV F+++C+ G+ G +
Sbjct: 173 PTVLGALVMSRPKTW--DPRTHVDVVIDPFLSKHLYSHQREGVSFLYDCLLGMEGKCG-Y 229
Query: 210 GCILADDMGLGKTLQSIALLYTLLCQGF--DGKPMVKKAIIVTPTSLVSNWEAEIKKWVG 267
ILAD+MGLGKTLQ+I +++TLL Q + + + A++V P +L+ NWE E W+G
Sbjct: 230 SAILADEMGLGKTLQTITVVWTLLKQSYYANRSSTINNAMVVAPVTLLKNWENEFYNWLG 289
Query: 268 G-RVQL-IALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLIC 325
R+ + IA C + S + ++I YET + + C DLLIC
Sbjct: 290 HERIHVYIARCAEDFQEFTSN--------KTYSIIITGYETVCTYLRNYGCGIDIDLLIC 341
Query: 326 DEAHRLKN--DQTLTN-----------------RNDLEEFFAMVNFTNPGILGDAAYFRR 366
DEAHRLK+ QT +NDL E+F+MVNF PG LG F+
Sbjct: 342 DEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQNDLSEYFSMVNFIIPGSLGTPNSFKA 401
Query: 367 YYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCK 426
YE I+ R A+ + LG R L + F LRR +L+ HLPP+ V+ K
Sbjct: 402 QYERPILRSRSMNASSRDISLGAARLQRLFEFTSNFTLRRKANILAKHLPPRTDIVLFIK 461
Query: 427 LTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTT 486
T Q +Y H + K ++ ++ KIL T L K+CN L+ + + N +T
Sbjct: 462 PTHQQENVYGHVL--DGFKSSVDQKGYYLKIL---TRLSKICNSTILLRN--EKENFLST 514
Query: 487 GFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYT 546
+D F M S K+ +LA LL QR + V+VS Y
Sbjct: 515 ELQDKHVFEQENMLLS---------------SSKLQILAALLKSF-QRGCQKAVIVSQYK 558
Query: 547 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEF-VFLLSSKAGGCGLNL 605
+TL+L + +L G+T S+R +V++FN S EF V LLSSKAGGCGLNL
Sbjct: 559 ETLELIELFLSILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNL 618
Query: 606 IGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ 665
G RL++++P WNPA D QA +R++R GQK+ V IY FLS+G ++E+++ RQ +K+GL
Sbjct: 619 TGSTRLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERIFIRQNTKQGLS 678
Query: 666 KVIQQEQTDSSATQ-GNFLSTEDLRDLFTF 694
DS A+Q NF + ED++ LF++
Sbjct: 679 SSF----IDSDASQKKNFFTGEDIKTLFSY 704
>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1
Length = 1493
Score = 252 bits (644), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 175/552 (31%), Positives = 269/552 (48%), Gaps = 76/552 (13%)
Query: 176 VDPLLVRFLRPHQREGVQFMFE--CVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLL 233
V L + L +Q+ GV++++E C G IL D+MGLGKT+Q IA L L
Sbjct: 499 VPGFLFKKLFKYQQTGVRWLWELHCQQA--------GGILGDEMGLGKTIQIIAFLAGLS 550
Query: 234 CQG---------FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVV 284
F+G + +IV PT+++ W E W +A+ T
Sbjct: 551 YSKIRTRGSNYRFEG---LGPTVIVCPTTVMHQWVKEFHTWWPPF--RVAILHETGSYTH 605
Query: 285 SGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTN----- 339
D +LI SY R+ S + +I DE H+++N
Sbjct: 606 KKEKLIRDVAHCHGILITSYSYIRLMQDDISRYD-WHYVILDEGHKIRNPNAAVTLACKQ 664
Query: 340 --------------RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEK 385
+N+L E +++ +F PG LG F + I G A+ +
Sbjct: 665 FRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQV 724
Query: 386 KLGIERSSELSAKVNQFILRR--TNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKN 443
K + + L +N ++LRR ++ +S LP K +V+ C+LT Q ++Y +F+ SK
Sbjct: 725 KTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKE 784
Query: 444 VKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGT-TGFEDCIRFFPPEMFSG 502
V R ++ E + I + + AL+K+CNHP L SG P G D E+
Sbjct: 785 VYRILNGEMQ---IFSGLIALRKICNHPDLF-----SGGPKNLKGLPD------DELEED 830
Query: 503 RSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP 562
+ G W + SGKM V+ LL + + R++L S Q LD+ R ++Y
Sbjct: 831 QFGYW--------KRSGKMIVVESLL-KIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYT 881
Query: 563 YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAN 622
YL++DGTT+I+ RQ L+ +N+ + + FVFLL+++ GG G+NL G NR+V++DPDWNP+
Sbjct: 882 YLKMDGTTTIASRQPLITRYNEDT-SIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPST 940
Query: 623 DKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNF 682
D QA R WR GQKK+V +YR L+ GTIEEK+Y RQ+ K+ L + ++ Q F
Sbjct: 941 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKD-----PKQRRF 995
Query: 683 LSTEDLRDLFTF 694
+ DL +LFT
Sbjct: 996 FKSNDLYELFTL 1007
>sp|Q9JIM3|RAD26_MOUSE Putative DNA repair and recombination protein RAD26-like OS=Mus
musculus GN=Rad26l PE=2 SV=2
Length = 699
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 184/604 (30%), Positives = 294/604 (48%), Gaps = 103/604 (17%)
Query: 166 NDGGNLVPITVDPLLVRFLRPHQREGVQFMFE-CVSGLLNAAGIHGCILADDMGLGKTLQ 224
++ G+ +P T++ R+LR +QREG QF++ + G GCIL DDMGLGKT+Q
Sbjct: 108 SEDGDSIPYTIN----RYLRDYQREGAQFLYRHYIEG-------RGCILGDDMGLGKTIQ 156
Query: 225 SIALLYTLLCQG------------FDGKPMVKKA--------IIVTPTSLVSNWEAEIKK 264
I+ L +L + F K M KK +IV P S++ NW+ E+
Sbjct: 157 VISFLAAVLHKKGTREDIENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDT 216
Query: 265 WVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLI 324
W G ++ L S +D+ + + ++ + +YET R+ + + E +I
Sbjct: 217 W--GYFRVTVLHGSKKDNELLRLKQ-----RKCEIALTTYETLRLCLEELNSLE-WSAII 268
Query: 325 CDEAHRLKNDQTLTN-------------------RNDLEEFFAMVNFTNPGILGDAAYFR 365
DEAHR+KN + +N+++E + ++++ PG+LG +F+
Sbjct: 269 VDEAHRIKNPKARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFK 328
Query: 366 RYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCC 425
+ + + G+ TAT+ E G + L+ K++ + LRRT L+ LP K +V C
Sbjct: 329 KQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLIKGQLPKKEDRMVYC 388
Query: 426 KLTPLQSELYNHFIHSKNVKRAISE-----------------------ETKQSKILAYIT 462
LT Q +Y + +++V ++ +T ++ L+Y+T
Sbjct: 389 SLTDFQKAVYQTVLETEDVALILTSSQPCTCGSGQKRRKCCYKTNSRGDTVRTLCLSYLT 448
Query: 463 ALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP--PEMFSGRSGSWTGGDGAWVELS-- 518
L+K+ NH L+ S + T C R F P+ D A+ LS
Sbjct: 449 VLQKVANHVALLQAASTSKHQETVIKRICDRVFSRFPDFVQ------KSKDAAFETLSDP 502
Query: 519 ---GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKR 575
GKM VL +LL H R++ D +++L S T+ LD+ Q C Y RLDG+T +R
Sbjct: 503 KYSGKMKVLQQLLNHFRKQRD-KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEER 561
Query: 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQ 635
K+V FN S++ + L+S+ AGG GLN +G N ++LFDP WNPAND QA R +R GQ
Sbjct: 562 LKIVKEFNS-SQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQ 620
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI---QQEQTDSSATQGNFLSTEDLRDLF 692
+ V + R +S GT+EE +Y RQ+ K+ L V+ + + A QG S E +LF
Sbjct: 621 CRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYFEAVQG---SKEHRGELF 677
Query: 693 TFHD 696
H+
Sbjct: 678 GVHN 681
>sp|Q5T890|RAD26_HUMAN Putative DNA repair and recombination protein RAD26-like OS=Homo
sapiens GN=RAD26L PE=1 SV=1
Length = 712
Score = 249 bits (637), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 181/601 (30%), Positives = 292/601 (48%), Gaps = 96/601 (15%)
Query: 166 NDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHG--CILADDMGLGKTL 223
+D G+ +P T++ R+LR +QREG +F++ IHG CIL DDMGLGKT+
Sbjct: 120 SDNGDSIPYTIN----RYLRDYQREGTRFLY--------GHYIHGGGCILGDDMGLGKTV 167
Query: 224 QSIALLYTLL-----------------CQGFDGKPMVKKA----IIVTPTSLVSNWEAEI 262
Q I+ L +L + +P+ A +IV P S++ NW+ E+
Sbjct: 168 QVISFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDEL 227
Query: 263 KKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDL 322
W G ++ L + +D+ + + ++ + +YET R+ + + E
Sbjct: 228 DTW--GYFRVTVLHGNRKDNELIRVKQ-----RKCEIALTTYETLRLCLDELNSLE-WSA 279
Query: 323 LICDEAHRLKNDQTLTN-------------------RNDLEEFFAMVNFTNPGILGDAAY 363
+I DEAHR+KN + +N+++E + ++++ PG+LG Y
Sbjct: 280 VIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTY 339
Query: 364 FRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVV 423
F++ + + G+ TAT+ E G + L+ K++ + LRRT L+ + LP K +V
Sbjct: 340 FKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMV 399
Query: 424 CCKLTPLQSELYNHFIHSKNVKRAISE-----------------------ETKQSKILAY 460
C LT Q +Y + +++V + ET ++ L+Y
Sbjct: 400 YCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSY 459
Query: 461 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP--PEMFSGRSGSWTGGDGAWVELS 518
+T L+K+ NH L+ S T C + F P+ F +S + + S
Sbjct: 460 LTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPD-FVQKSKDAAFETLSDPKYS 518
Query: 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578
GKM VL +LL H R + D+++L S T+ LD+ Q C Y RLDG+T +R K+
Sbjct: 519 GKMKVLQQLLNHCR-KNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKI 577
Query: 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
V FN +++ + L+S+ AGG GLN +G N +VLFDP WNPAND QA R +R GQ +
Sbjct: 578 VKEFNS-TQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRD 636
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVI---QQEQTDSSATQGNFLSTEDLRDLFTFH 695
V + R +S GT+EE +Y RQ+ K+ L V+ + + A QG S E +LF H
Sbjct: 637 VKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYFEAVQG---SKEHQGELFGIH 693
Query: 696 D 696
+
Sbjct: 694 N 694
>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l
PE=1 SV=1
Length = 1451
Score = 246 bits (628), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 181/584 (30%), Positives = 273/584 (46%), Gaps = 78/584 (13%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L HQ+EGV F++ L G G ILADDMGLGKT+Q I+ L G +
Sbjct: 105 LYDHQKEGVAFLYS-----LYRDGRKGGILADDMGLGKTIQVISFL-----SGMYDAELA 154
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDP----CSSLQV 299
++V PTSL+ NW E KW G +++ S++ + ++ ++ Q+
Sbjct: 155 NHTLLVMPTSLIKNWVREFAKWTPG-MRVKEFHGSSKTERNRNLERIQRKGGVIITTYQM 213
Query: 300 LIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLT----------NR--------- 340
LI +YE + + D +I DEAH++K T T NR
Sbjct: 214 LINNYEQLGSNGHR---EFKWDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQ 270
Query: 341 NDLEEFFAMVNFTNPG-ILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399
N+L E +A+ +F G +LG + F+ YE I RE AT EK LG+ S L+ +
Sbjct: 271 NNLREMWALFDFACQGSLLGTSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDII 330
Query: 400 NQFILRRTNA-----------------LLSNHLP--------PKIIE----VVCCKLTPL 430
+ LRRT A N P P + +V L+ +
Sbjct: 331 KPYFLRRTKADVQQKKLKLEEGFEEEEDQENKCPNAREGVEMPSLTRKNDLIVWTYLSSV 390
Query: 431 QSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFED 490
Q ++YN FI +K + T LA +T LKKLC+HP+L+ G D
Sbjct: 391 QEDIYNKFISLDQIKELL---TTTRSPLAELTVLKKLCDHPRLLSQRAVI-QLGLERGSD 446
Query: 491 CIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLD 550
E S S D +E SGK+ + L+ LR+ R ++ S + LD
Sbjct: 447 SELVHSDESESAVSQIDNISDHTLIEESGKLQFVVSLMECLREE-GHRTLIFSQSRKMLD 505
Query: 551 LFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGN 609
+ ++ R R + LRLDGT T +++R+K ++ F K +FLL+++ GG G+ L G N
Sbjct: 506 IMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQ-TDKRYTIFLLTTQVGGVGITLTGAN 564
Query: 610 RLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQ 669
R+V+FDP WNPA D QA R +R GQ + V IYR ++ GT+EEK+Y+RQ+ K+ L +
Sbjct: 565 RVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIR--- 621
Query: 670 QEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQN 713
+ T + S ++LR+LF D S + + Q+
Sbjct: 622 -QTTGDKKNPFRYFSKQELRELFKLEDTRSSSTQQQLQAMHAQS 664
>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1
SV=1
Length = 1120
Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 272/536 (50%), Gaps = 81/536 (15%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q +G+ ++ L+ ILAD+MGLGKTLQ+I+ L Y + +G P
Sbjct: 184 LRDYQVQGLNWLISLHENKLSG------ILADEMGLGKTLQTISFLGYLRYVKQIEG-PF 236
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALC--ESTRDDVVSGIDSFTDPCSSLQVL 300
+I+ P S + NW E KW V ++ L + TR D+V I + VL
Sbjct: 237 ----LIIVPKSTLDNWRREFLKWTPN-VNVLVLHGDKDTRADIVRNII----LEARFDVL 287
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR-------------------N 341
I SYE + + ++ DEAHR+KN+Q+ ++ N
Sbjct: 288 ITSYEMVIREKNALK-RLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQN 346
Query: 342 DLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
+L E +A++NF P I GD+ F ++E + +E+++++ I+ +L + +N
Sbjct: 347 NLHELWALLNFLLPDIFGDSELFDEWFEQN--------NSEQDQEIVIQ---QLHSVLNP 395
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK--NVKRAISEETKQSKILA 459
F+LRR A + L PKI V +T +Q + Y + V A+ + ++++L
Sbjct: 396 FLLRRVKADVEKSLLPKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLN 455
Query: 460 YITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSG 519
+ L+K CNHP L ++ + G P TT D + SG
Sbjct: 456 IVMQLRKCCNHPYL-FEGAEPGPPYTT------------------------DEHLIFNSG 490
Query: 520 KMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLV 579
KM +L +LL L+++ R+++ S ++ LD+ C R + Y R+DG+TS +R + +
Sbjct: 491 KMIILDKLLKRLKEKGS-RVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAI 549
Query: 580 NHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRV 639
+ +N P+ +FVFLL+++AGG G+NL+ + ++LFD DWNP D QA R R GQKK+V
Sbjct: 550 DEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQV 609
Query: 640 FIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQEQTDSSATQGNFLSTEDLRDLFTF 694
+YRF++ IEEKV +R K L Q VIQQ +A+ GN S +DL D+ F
Sbjct: 610 HVYRFVTENAIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGN--SKDDLLDMIQF 663
>sp|Q2NKX8|ERC6L_HUMAN DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L
PE=1 SV=1
Length = 1250
Score = 240 bits (613), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 183/576 (31%), Positives = 279/576 (48%), Gaps = 102/576 (17%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L HQ+EG+ F++ L G G ILADDMGLGKT+Q IA L + FD +V
Sbjct: 96 LFEHQKEGIAFLYS-----LYRDGRKGGILADDMGLGKTVQIIAFLSGM----FDAS-LV 145
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDP----CSSLQV 299
+++ PT+L++ W E KW G +++ ++D+ ++ ++ Q+
Sbjct: 146 NHVLLIMPTNLINTWVKEFIKWTPG-MRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQM 204
Query: 300 LIVSYETFRMHSSKFSCSESC-DLLICDEAHRLKNDQT----------LTNR-------- 340
LI +++ S F E D +I DEAH++K T +NR
Sbjct: 205 LINNWQQL----SSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPI 260
Query: 341 -NDLEEFFAMVNFTNPG-ILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAK 398
N+L+E +++ +F G +LG F+ YE I RE AT EK LG + S L A
Sbjct: 261 QNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAI 320
Query: 399 VNQFILRRTN------------ALLSNHLPPKIIEVVC--------------CKLTPLQS 432
+ + LRRT A L+ P ++ +C +L PLQ
Sbjct: 321 IKPYFLRRTKEDVQKKKSSNPEARLNEKNPD--VDAICEMPSLSRKNDLIIWIRLVPLQE 378
Query: 433 ELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSG---NPGTTGFE 489
E+Y F+ ++K + E LA + LKKLC+HP+L+ + ++ N GT +
Sbjct: 379 EIYRKFVSLDHIKELLMETRSP---LAELGVLKKLCDHPRLL--SARACCLLNLGTFSAQ 433
Query: 490 DCIRFFPPEMFSGRSGSWTG--------GDGAWVELSGKMHVLARLLGHLRQRTDDRIVL 541
D G G + D +E SGKM L LL LR +V
Sbjct: 434 D-----------GNEGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVF 482
Query: 542 VSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLSSKAGG 600
S Q L++ +L + R + LR+DGT T + +R+K +N F +K+ VFLL+++ GG
Sbjct: 483 -SQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQ-NKDYSVFLLTTQVGG 540
Query: 601 CGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMS 660
GL L R+V+FDP WNPA D QA RV+R GQK+ V +YR ++ GT+EEK+Y+RQ+
Sbjct: 541 VGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVF 600
Query: 661 KEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHD 696
K+ L + + T + S ++LR+LFT D
Sbjct: 601 KDSLIR----QTTGEKKNPFRYFSKQELRELFTIED 632
>sp|A6QQR4|ERC6L_BOVIN DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L
PE=2 SV=1
Length = 1242
Score = 238 bits (608), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 180/570 (31%), Positives = 276/570 (48%), Gaps = 88/570 (15%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L +Q+EG+ F++ L G G ILADDMGLGKT+Q IA L + FD +V
Sbjct: 96 LYEYQKEGIAFLYS-----LYRDGRRGGILADDMGLGKTVQIIAFLSGM----FDAS-LV 145
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQ---VL 300
+++ PTSL+S W E KW G +++ ++D+ + C Q V+
Sbjct: 146 NHVLLIMPTSLISTWLREFVKWTPG-MRVKTFHGPSKDERTRNL------CRIQQRNGVI 198
Query: 301 IVSYETFRMHSSKFSCSES----CDLLICDEAHRLKNDQT----------LTNR------ 340
I +Y+ + + S D +I DEAH++K+ T +NR
Sbjct: 199 ITTYQMLINNWQQLSSLNGQEFLWDYVILDEAHKIKSSSTKSAICARAIPASNRILLTGT 258
Query: 341 ---NDLEEFFAMVNFTNPG-ILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELS 396
N+L+E +++ +F G +LG F+ YE I RE AT EK LG + S L
Sbjct: 259 PIQNNLQELWSLFDFACQGSLLGTLRTFKMEYENPITRAREKDATPGEKALGFKISENLM 318
Query: 397 AKVNQFILRRTN------------ALLSNHLP--------PKIIE----VVCCKLTPLQS 432
A + + LRRT LS P P + ++ +L PLQ
Sbjct: 319 AIIKPYFLRRTKEEVQKKKSSNPEVQLSEKSPDVGAICEMPSLSRKNDLIIWIRLVPLQE 378
Query: 433 ELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492
E+Y F+ ++K + E LA + LKKLC+HP+L+ + ++ G
Sbjct: 379 EIYRKFVSLDHIKELLMETRSP---LAELGVLKKLCDHPRLL--SARACGLLNLG---AA 430
Query: 493 RFFPPEMFSGRSGSWTG-----GDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQ 547
+F + G S D +E SGKM L LL LR +V S +
Sbjct: 431 KFSVQDEIEGEDSSDVDHIDQISDDTLMEESGKMLFLMDLLKKLRDEGHQTLVF-SQSRR 489
Query: 548 TLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLI 606
L++ +L + R + LR+DGT T + +R+K ++ F +K+ VFLL+++ GG GL L
Sbjct: 490 ILNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQ-NKDYSVFLLTTQVGGVGLTLT 548
Query: 607 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK 666
+R+V+FDP WNPA D QA RV+R GQK+ V +YR ++ GT+EEK+Y+RQ+ K+ L +
Sbjct: 549 AASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIR 608
Query: 667 VIQQEQTDSSATQGNFLSTEDLRDLFTFHD 696
+ T + S ++LR+LFT D
Sbjct: 609 ----QTTGDKKNPFRYFSKQELRELFTIED 634
>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l
PE=1 SV=1
Length = 1240
Score = 234 bits (596), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 183/585 (31%), Positives = 277/585 (47%), Gaps = 86/585 (14%)
Query: 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDG 239
L L HQ+EG+ F++ L G G ILADDMGLGKT+Q IA L + FD
Sbjct: 93 LYEKLFEHQKEGIAFLYS-----LYKDGRKGGILADDMGLGKTVQIIAFLSGM----FDA 143
Query: 240 KPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLI---ALCESTRDDVVSGIDSFTDPCS 295
+V +++ PT+L++ W E KW G RV+ + E TR S T
Sbjct: 144 S-LVNHVLLIMPTNLINTWVNEFAKWTPGMRVKTFHGSSKSERTR--------SLTRIQQ 194
Query: 296 SLQVLIVSYETFRMHSSKFSC----SESCDLLICDEAHRLKNDQT----------LTNR- 340
V+I +Y+ + + + + D +I DEAH++K+ T +NR
Sbjct: 195 RNGVVITTYQMLLNNWQQLASFNGQAFVWDYVILDEAHKIKSASTKSAVCARAIPASNRL 254
Query: 341 --------NDLEEFFAMVNFTNPG-ILGDAAYFRRYYETSIICGREPTATEEEKKLGIER 391
N+L+E +++ +F G +LG F+ YE II RE AT EK LG++
Sbjct: 255 LLTGTPVQNNLQELWSLFDFACQGSLLGTLKTFKMEYEHPIIRAREKDATPGEKALGLKI 314
Query: 392 SSELSAKVNQFILRRTN------------ALLSNHLPPKIIEVVC--------------C 425
S L + + LRRT A L P E +C
Sbjct: 315 SENLMEIIKPYFLRRTKEEVQTKKADNPEARLGEKNPAG--EAICDMFSLARKNDLIVWI 372
Query: 426 KLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLI-YDTIKSGNPG 484
+L PLQ E+Y F+ ++K + E LA + LKKLC+HP+L+ + N G
Sbjct: 373 RLLPLQEEIYRKFVSLDHIKELLMETRSP---LAELGVLKKLCDHPRLLSARACRLLNLG 429
Query: 485 TTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSN 544
T F E S + D ++ SGKM L LL L+ +V S
Sbjct: 430 TATF-SAQDENEQEDVSNMNSIDHLPDKTLIQESGKMIFLMSLLERLQDEGHQTLVF-SQ 487
Query: 545 YTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGL 603
+ L++ +L + + + LR+DGT T + +R+K + F +K VFLL+++ GG GL
Sbjct: 488 SIKILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQ-NKEYSVFLLTTQVGGVGL 546
Query: 604 NLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEG 663
L R+V+FDP WNPA D QA RV+R GQK+ V +YR ++ GT+EEK+Y+RQ+ K+
Sbjct: 547 TLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDS 606
Query: 664 LQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHC 708
L + + T + + ++L++LFT D +S + C
Sbjct: 607 LIR----QTTGEKKNPFRYFTKQELKELFTVGDLQKSATQMQLQC 647
>sp|Q9UR24|RHP26_SCHPO DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp26 PE=4 SV=1
Length = 973
Score = 228 bits (582), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 193/659 (29%), Positives = 299/659 (45%), Gaps = 129/659 (19%)
Query: 99 DNGNDQLARRLCARKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVL 158
D+G+D L R+R W ++R L D ENN F G D +L
Sbjct: 208 DDGDD-----LVYRQRLNAWCANRKEL------RDQASASENNKDRGEF---EGKDEWLL 253
Query: 159 WQPEEPQN--DGGNLVPITVDPLLVRFLRPHQREGVQFMFE--CVSGLLNAAGIHGCILA 214
P + +GG +P + P L R+ Q VQ+++E C G I+
Sbjct: 254 PHPSKKGQTFEGGFTIPGDIRPHLFRY----QVTCVQWLWELYCQEA--------GGIIG 301
Query: 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIA 274
D+MGLGKT+Q ++ L +L G KP A+IV P +L+ W E W ++++
Sbjct: 302 DEMGLGKTIQIVSFLSSLHHSGKFQKP----ALIVCPATLMKQWVNEFHTWWAP-LRVVV 356
Query: 275 L--------------------CESTRDDVVSGI------DSFTDPCSSL--------QVL 300
L ES ++ + I SF +L +L
Sbjct: 357 LHATGSGQRASREKRQYESDASESEAEESKTSIKLRGASSSFHRYAKNLVESVFTRGHIL 416
Query: 301 IVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR---------N 341
I +Y R++ E + DE H+++N + NR N
Sbjct: 417 ITTYAGLRIYGDLILPRE-WGYCVLDEGHKIRNPDSEISISCKQIRTVNRIILSGTPIQN 475
Query: 342 DLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ 401
+L E + + +F PG LG F+ + I G A+ + + + + L ++
Sbjct: 476 NLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNVQVQTAYKCACMLRDLISP 535
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYI 461
++LRR ++ LP K +V+ CKLTPLQ + Y F+ ++++ ++ + ++L I
Sbjct: 536 YLLRRMKLDVAADLPKKSEQVLFCKLTPLQRKAYQDFLQGSDMQKILN---GKRQMLYGI 592
Query: 462 TALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKM 521
L+K+CNHP L+ + + GD E SGK+
Sbjct: 593 DILRKICNHPDLV----------------------TREYLLHKEDYNYGDP---EKSGKL 627
Query: 522 HVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-RYPYLRLDGTTSISKRQKLVN 580
V+ LL L ++ R +L S Q LD+ ++ Y R+DG+TSI+ RQ LV+
Sbjct: 628 KVIRALLT-LWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVD 686
Query: 581 HFNDPSKNEF--VFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638
+FN KNE+ VFLL+++ GG G+NL G +R++LFDPDWNP+ D QA R WR GQKK
Sbjct: 687 NFN---KNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKD 743
Query: 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDD 697
V +YR ++ GTIEEK+Y RQ+ K+ L I ++ Q F DL DLFT D+
Sbjct: 744 VVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKD-----PKQRRFFKMTDLHDLFTLGDN 797
>sp|P40352|RAD26_YEAST DNA repair and recombination protein RAD26 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAD26 PE=1
SV=1
Length = 1085
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 192/699 (27%), Positives = 310/699 (44%), Gaps = 140/699 (20%)
Query: 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDG 239
+ L +Q+ VQ+++E N GI G D+MGLGKT+Q IA + L G
Sbjct: 293 IYSLLFNYQKTCVQWLYELYQQ--NCGGIIG----DEMGLGKTIQVIAFIAALHHSGLLT 346
Query: 240 KPMVKKAIIVTPTSLVSNWEAEIKKW-----------VGGRV---QLIALCESTRDDVVS 285
P+ +IV P +++ W E + W +G + Q + E+ ++++
Sbjct: 347 GPV----LIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLENLIM 402
Query: 286 G--------------------------IDSFTDPC-SSLQVLIVSYETFRMHSSKFSCSE 318
+D D + +LI +Y R+HS K
Sbjct: 403 NSKPSDFSYEDWKNSTRTKKALESSYHLDKLIDKVVTDGHILITTYVGLRIHSDKL-LKV 461
Query: 319 SCDLLICDEAHRLKN---DQTLT-------NR---------NDLEEFFAMVNFTNPGILG 359
+ DE H+++N + +LT NR N+L E +++ +F PG LG
Sbjct: 462 KWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLG 521
Query: 360 DAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKI 419
F++ + I G AT + + G + + L ++ ++LRR A ++ LP K
Sbjct: 522 TLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADVAKDLPQKK 581
Query: 420 IEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIK 479
V+ CKLT Q Y F+HS ++ + + + +L I L+K+CNHP L+ K
Sbjct: 582 EMVLFCKLTKYQRSKYLEFLHSSDLNQI---QNGKRNVLFGIDILRKICNHPDLLDRDTK 638
Query: 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRI 539
NP + D R SGKM V+ +LL L + +
Sbjct: 639 RHNPD---YGDPKR------------------------SGKMQVVKQLL-LLWHKQGYKA 670
Query: 540 VLVSNYTQTLDLFAQLCRER-----RYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLL 594
+L + Q LD+ + + YLR+DGTT+I RQ LV+ FN+ S + VFLL
Sbjct: 671 LLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFD--VFLL 728
Query: 595 SSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 654
+++ GG G+NL G NR+++FDPDWNP+ D QA R WR GQK+ V IYR + G+IEEK+
Sbjct: 729 TTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKI 788
Query: 655 YQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNY 714
Y RQ+ K+ L I + Q F +L DLF+ EN + T
Sbjct: 789 YHRQIFKQFLTNRIL-----TDPKQKRFFKIHELHDLFSLGG-------ENGYST----- 831
Query: 715 DDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKS----SEKQLGTPLEED 770
E + E + ++ N + +E D L+G + KL+S EK+ + E+D
Sbjct: 832 ----EELNEEVQKHTENLKNSKSEESDDFEQLVNLSG-VSKLESFYNGKEKKENSKTEDD 886
Query: 771 -----LNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQV 804
L + ++ D+++ + AG + + T +
Sbjct: 887 RLIEGLLGGESNLETVMSHDSVVNSHAGSSSSNIITKEA 925
>sp|Q9Y4B4|ARIP4_HUMAN Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=4
Length = 1467
Score = 219 bits (559), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 176/636 (27%), Positives = 271/636 (42%), Gaps = 157/636 (24%)
Query: 174 ITVDPLLVRFLRPHQREGVQFMF----ECVSGLLNAAGIHGCILADDMGLGKTLQSIALL 229
+ + P L R ++PHQ G++F++ E + ++G GCILA MGLGKTLQ I+ +
Sbjct: 261 VFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGF-GCILAHSMGLGKTLQVISFI 319
Query: 230 YTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW---------------VGGRVQLIA 274
L F P K + + P + + NW AE W V R +
Sbjct: 320 DVL----FRHTP-AKTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVH 374
Query: 275 LCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFS------------------- 315
+ + S D S VL++ YE +R+ + K S
Sbjct: 375 ILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIID 434
Query: 316 ------------------CSESCDLLICDEAHRLKNDQTLTNR----------------- 340
C D++ICDE HR+KN Q T++
Sbjct: 435 LDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYP 494
Query: 341 --NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAK 398
N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L +
Sbjct: 495 LQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSL 554
Query: 399 VNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKIL 458
+ F+ RR + +L HLP K V+ +L+ +Q +LY F+ + S L
Sbjct: 555 LEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFM--DRFRDCGSSGWLGLNPL 612
Query: 459 AYITALKKLCNHPKLIYDTIKS--------------GNPGTTG----------------- 487
K+ NHP ++Y+ ++ G+ GT+
Sbjct: 613 KAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLA 672
Query: 488 ----------FEDCIRFFPPEMFSGRSGS-----W-----TGGDGAWVELSGKMHVLARL 527
F + F P F R + W T +E S KM +L L
Sbjct: 673 SSMGEATNSKFLQGVGFNP---FQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHL 729
Query: 528 LGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP------------------YLRLDGT 569
+ + D+I++ S TL L + +R P Y RLDG+
Sbjct: 730 IEE-SVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGS 788
Query: 570 TSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA 628
T +R++L+N FNDPS ++FLLS++AG G+NLIG NR+V+FD WNP +D QA
Sbjct: 789 TPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVC 848
Query: 629 RVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
RV+R GQKK +IYR ++ T+E+K+Y RQ+SK+G+
Sbjct: 849 RVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGM 884
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf21 PE=1 SV=1
Length = 1199
Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 165/533 (30%), Positives = 255/533 (47%), Gaps = 92/533 (17%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q G+Q+M + LN ILAD+MGLGKT+Q+I+L+ L+ + P
Sbjct: 417 LKEYQLRGLQWMISLYNNHLNG------ILADEMGLGKTIQTISLITHLIEKKRQNGPF- 469
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLI---------ALCESTRDDVVSGIDSFTDPC 294
+++ P S ++NW E ++W V+++ AL R
Sbjct: 470 ---LVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRH------------- 513
Query: 295 SSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT-LTN-------------- 339
S+ QVL+ +YE + + +I DE HR+KN Q+ LTN
Sbjct: 514 SNFQVLLTTYE-YIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLIL 572
Query: 340 -----RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSI--ICGREPTA-TEEEKKLGIER 391
+N+L E +A++NF P I F ++ T G++ TEEE L I R
Sbjct: 573 TGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRR 632
Query: 392 SSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHF-----IHSKNVKR 446
L + F+LRR + LP K+ +V+ C+++ LQ +LY ++ ++ KR
Sbjct: 633 ---LHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKR 689
Query: 447 AISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGS 506
+T + + LKK+CNHP + D +S +P TGF
Sbjct: 690 G---KTGIKGLQNTVMQLKKICNHPFVFEDVERSIDP--TGF------------------ 726
Query: 507 WTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRL 566
D W +SGK +L R+L L R+ RI++ TQ +++ R++ YLRL
Sbjct: 727 --NYDMLW-RVSGKFELLDRILPKLF-RSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRL 782
Query: 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQA 626
DG+T R KL+ FNDP+ +FLLS++AGG GLNL + +++FD DWNP D QA
Sbjct: 783 DGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQA 842
Query: 627 AARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQTDSSAT 678
R R GQ K V IYR ++ ++EE + R K + KVIQ + D+ +T
Sbjct: 843 QDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKST 895
>sp|Q91ZW3|SMCA5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Mus musculus
GN=Smarca5 PE=1 SV=1
Length = 1051
Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 165/517 (31%), Positives = 250/517 (48%), Gaps = 91/517 (17%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L GI+G ILAD+MGLGKTLQ+I+LL Y + G M
Sbjct: 179 LRDYQVRGLNWLIS-----LYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM 232
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWV---------GGRVQLIALCESTRDDVVSGIDSFTDP 293
V + P S + NW +E KKWV G + Q A RD ++ G
Sbjct: 233 V-----LVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFV---RDVLLPG------- 277
Query: 294 CSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR--- 340
V + SYE S F + L+ DEAHR+KN+++ TNR
Sbjct: 278 --EWDVCVTSYEMLIKEKSVFK-KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLL 334
Query: 341 ------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE 394
N+L E ++++NF P + A F +++T+ G ++KL +ER
Sbjct: 335 TGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--------DQKL-VER--- 382
Query: 395 LSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQ 454
L + F+LRR A + LPPK + L+ +Q E Y + + + +
Sbjct: 383 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDK 442
Query: 455 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAW 514
++L + L+K CNHP L +D + G P TT D
Sbjct: 443 MRLLNILMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DMHL 477
Query: 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574
V SGKM VL +LL L+++ R+++ S T+ LD+ C R Y Y RLDG T +
Sbjct: 478 VTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDE 536
Query: 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634
RQ +N +N+P+ +FVF+LS++AGG G+NL + ++L+D DWNP D QA R R G
Sbjct: 537 RQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIG 596
Query: 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
Q K V ++RF++ T+EE++ +R K L ++ Q+
Sbjct: 597 QTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 633
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila
melanogaster GN=Chd3 PE=2 SV=3
Length = 892
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 165/570 (28%), Positives = 272/570 (47%), Gaps = 94/570 (16%)
Query: 184 LRPHQREGVQFM-FECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPM 242
L P Q EGV ++ + G+ ILAD+MGLGKT+Q++ LY+L +G P
Sbjct: 267 LHPFQIEGVSWLRYSWGQGI-------PTILADEMGLGKTIQTVVFLYSLFKEGHCRGPF 319
Query: 243 VKKAIIVTPTSLVSNWEAEIKKW---------VGGRVQ--LIALCESTRDDVVSGIDSFT 291
+I P S ++NWE E++ W VGG+ +I E + ++V +
Sbjct: 320 ----LISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMREN 375
Query: 292 DPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR----------- 340
V++ SYE + ++ C + L++ DEAHRL+++Q+ R
Sbjct: 376 QTQYKFNVMLTSYEFISVDAAFLGCIDWAALVV-DEAHRLRSNQSKFFRILSKYRIGYKL 434
Query: 341 --------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERS 392
N+LEE F ++NF + G D F+ + T+ K+ ++R
Sbjct: 435 LLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEF------------TDVSKEEQVKRL 482
Query: 393 SELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEET 452
E+ + +LRR A + +PPK +V +L+ +Q + Y H + +KN K A++++
Sbjct: 483 HEI---LEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHIL-TKNFK-ALNQKG 537
Query: 453 --KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGG 510
+ +L + L+K CNHP L + +G +
Sbjct: 538 GGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEM------------------- 578
Query: 511 DGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTT 570
+ + SGK+ +L+++L L+ + R++L S T+ L++ Y Y R+DG+
Sbjct: 579 -SSLTKASGKLDLLSKMLKQLKA-DNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSI 636
Query: 571 SISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARV 630
RQK ++ FNDP FVFLLS++AGG G+NL + +++FD DWNP ND QA +R
Sbjct: 637 KGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRA 696
Query: 631 WRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRD 690
R GQKK+V IYRF++ ++EE++ Q K L ++ + T NF S ++L D
Sbjct: 697 HRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTT--NF-SKDELED 753
Query: 691 LFTF--HDDVRSEIHENMHCTRCQNYDDGA 718
+ F D + E +H YDD A
Sbjct: 754 ILRFGTEDLFKDGKSEAIH------YDDKA 777
>sp|Q99NG0|ARIP4_MOUSE Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1
Length = 1466
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 177/639 (27%), Positives = 269/639 (42%), Gaps = 163/639 (25%)
Query: 174 ITVDPLLVRFLRPHQREGVQFMF----ECVSGLLNAAGIHGCILADDMGLGKTLQSIALL 229
+ + P L R ++PHQ G++F++ E + ++G GCILA MGLGKTLQ I+ +
Sbjct: 260 VFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGF-GCILAHSMGLGKTLQVISFI 318
Query: 230 YTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW---------------VGGRVQLIA 274
L F P K + + P + + NW AE W V R +
Sbjct: 319 DVL----FRHTP-AKTVLAIVPVNTLQNWLAEFNMWLPAPEALPADSKPEEVQPRFFKVH 373
Query: 275 LCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFS------------------- 315
+ V S D S VL++ YE +R+ + K S
Sbjct: 374 ILNDEHKTVASRAKVTADWVSEGGVLLMGYEMYRLLTLKKSLATSRPKKTKKRSHPVIID 433
Query: 316 ------------------CSESCDLLICDEAHRLKNDQTLTNR----------------- 340
C D++ICDE HR+KN Q T++
Sbjct: 434 LDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYP 493
Query: 341 --NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAK 398
N+L E++ MV+F P LG F +E I+ G+ +T ++ +L RS L +
Sbjct: 494 LQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSL 553
Query: 399 VNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKIL 458
+ F+ RR + +L HLP K V+ +L+ +Q +LY F+ + S L
Sbjct: 554 LEGFVQRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFMDR-------FRDCGTSGWL 606
Query: 459 AYITALKKLC------NHPKLIYDTIKSGN----------------------PGTTGFED 490
+ LK C NHP ++Y+ ++ N P T +
Sbjct: 607 G-LNPLKAFCVCCKIWNHPDVLYEALQKENLANEQDLDVEELGSAGTSARCPPHGTKVKG 665
Query: 491 CIRFFPPEMFSGRSGSWTGGDG--------------AW------------VELSGKMHVL 524
P M + + G G W +E S KM +L
Sbjct: 666 EDSALPSSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKELLTNYQTGVLENSPKMVLL 725
Query: 525 ARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP------------------YLRL 566
L+ + D+I++ S TL L + +R P Y RL
Sbjct: 726 FHLIEE-SVKLGDKILVFSQSLSTLALIEEFLGKRDMPCLPGAEGQGTQKWVRNVSYFRL 784
Query: 567 DGTTSISKRQKLVNHFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQ 625
DG+T +R++L+N FNDPS ++FLLS++AG G+NLIG NR+V+FD WNP +D Q
Sbjct: 785 DGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQ 844
Query: 626 AAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664
A RV+R GQKK IYR ++ T+E+K+Y RQ+SK+G+
Sbjct: 845 AVCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGM 883
>sp|O60264|SMCA5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Homo sapiens
GN=SMARCA5 PE=1 SV=1
Length = 1052
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 164/518 (31%), Positives = 255/518 (49%), Gaps = 93/518 (17%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L GI+G ILAD+MGLGKTLQ+I+LL Y + G M
Sbjct: 180 LRDYQVRGLNWLIS-----LYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHM 233
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWV---------GGRVQLIALCESTRDDVVSGIDSFTDP 293
V + P S + NW +E K+WV G + Q A RD ++ G D
Sbjct: 234 V-----LVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFV---RDVLLPGE---WDV 282
Query: 294 C-SSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------LTNR-- 340
C +S ++LI F+ + ++ L+ DEAHR+KN+++ TNR
Sbjct: 283 CVTSYEMLIKEKSVFKKFNWRY--------LVIDEAHRIKNEKSKLSEIVREFKTTNRLL 334
Query: 341 -------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSS 393
N+L E ++++NF P + A F +++T+ G ++KL +ER
Sbjct: 335 LTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--------DQKL-VER-- 383
Query: 394 ELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETK 453
L + F+LRR A + LPPK + L+ +Q E Y + + +
Sbjct: 384 -LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMD 442
Query: 454 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGA 513
+ ++L + L+K CNHP L +D + G P TT D
Sbjct: 443 KMRLLNILMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DMH 477
Query: 514 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSIS 573
V SGKM VL +LL L+++ R+++ S T+ LD+ C R Y Y RLDG T
Sbjct: 478 LVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHD 536
Query: 574 KRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRD 633
+RQ +N +N+P+ +FVF+LS++AGG G+NL + ++L+D DWNP D QA R R
Sbjct: 537 ERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 596
Query: 634 GQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671
GQ K V ++RF++ T+EE++ +R K L ++ Q+
Sbjct: 597 GQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 634
>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus
GN=Smarca1 PE=1 SV=1
Length = 1046
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 173/572 (30%), Positives = 267/572 (46%), Gaps = 80/572 (13%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L G++G ILAD+MGLGKTLQ+IALL Y + G M
Sbjct: 187 LRDYQIRGLNWLIS-----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYRNIPGPHM 240
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
V + P S + NW E K+WV L +C DV + V +
Sbjct: 241 V-----LVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDVRAAFIRDEMMPGEWDVCVT 292
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL----------TNR---------NDL 343
SYE S F L+ DEAHR+KN+++ TNR N+L
Sbjct: 293 SYEMVIKEKSVFK-KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNL 351
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
E +A++NF P + A F +++T G ++KL +ER L A + F+
Sbjct: 352 HELWALLNFLLPDVFNSADDFDSWFDTKNCLG--------DQKL-VER---LHAVLKPFL 399
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITA 463
LRR + LPPK + L+ +Q E Y + S + + ++L +
Sbjct: 400 LRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQ 459
Query: 464 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHV 523
L+K CNHP L +D + G P TT D V SGKM
Sbjct: 460 LRKCCNHPYL-FDGAEPGPPYTT------------------------DEHIVGNSGKMVA 494
Query: 524 LARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFN 583
L +LL ++++ R+++ S T+ LD+ C R Y Y RLDG T +R++ ++ FN
Sbjct: 495 LDKLLARIKEQ-GSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFN 553
Query: 584 DPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYR 643
P+ ++F+F+LS++AGG G+NL + ++L+D DWNP D QA R R GQKK V ++R
Sbjct: 554 APNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFR 613
Query: 644 FLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIH 703
++ T+EE++ +R K L ++ Q Q Q N L+ E++ + +R
Sbjct: 614 LITDNTVEERIVERAEIKLRLDSIVIQ-QGRLIDQQSNKLAKEEMLQM------IRHGAT 666
Query: 704 ENMHCTRCQNYDDGAESIGEGDETNSANKNDQ 735
C + D+ +I E E +A N++
Sbjct: 667 HVFACKESELTDEDIVTILERGEKKTAEMNER 698
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis
elegans GN=chd-3 PE=2 SV=2
Length = 1787
Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 161/546 (29%), Positives = 256/546 (46%), Gaps = 84/546 (15%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L P+Q EG+ ++ C S +A ILAD+MGLGKT+QS+ LYTL+ +G P
Sbjct: 616 LHPYQLEGINWLRHCWSNGTDA------ILADEMGLGKTVQSLTFLYTLMKEGHTKGPF- 668
Query: 244 KKAIIVTPTSLVSNWEAEIKKW---------VGGRVQLIALCE---STRDDVVSGIDSFT 291
+I P S + NWE E + W VG R + + E S D V G +
Sbjct: 669 ---LIAAPLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVS 725
Query: 292 DPCS----SLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT----------- 336
+ VL+ SYE M + S + L++ DEAHRLKN+Q+
Sbjct: 726 KIKTLENLKFHVLLTSYECINMDKAILSSIDWAALVV-DEAHRLKNNQSTFFKNLREYNI 784
Query: 337 -----LTN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG 388
LT +N+LEE F ++NF P F + +E K+
Sbjct: 785 QYRVLLTGTPLQNNLEELFHLLNFLAPDRFNQLESFTAEF------------SEISKEDQ 832
Query: 389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI 448
IE+ L + +LRR A + +P K +V +L+ +Q + Y + + +
Sbjct: 833 IEKLHNL---LGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALNV 889
Query: 449 SEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWT 508
Q ++ I LKK CNHP L + C+ P++ ++G +
Sbjct: 890 KNGGTQMSLINIIMELKKCCNHPYLF-------------MKACLE--APKL---KNGMYE 931
Query: 509 GGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDG 568
G A ++ +GK +L ++L L+ R+++ S T LD+ C Y Y R+DG
Sbjct: 932 GS--ALIKNAGKFVLLQKMLRKLKD-GGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDG 988
Query: 569 TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA 628
+ + +RQ ++ +N P +FVFLLS++AGG G+NL + ++++D DWNP ND QA +
Sbjct: 989 SITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFS 1048
Query: 629 RVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDL 688
R R GQK +V IYRF++ G++EE++ K L ++ + A G +S +L
Sbjct: 1049 RAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVV--RAGLGAKDGKSMSKTEL 1106
Query: 689 RDLFTF 694
D+ +
Sbjct: 1107 DDVLRW 1112
>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1
Length = 1829
Score = 211 bits (536), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 152/506 (30%), Positives = 231/506 (45%), Gaps = 82/506 (16%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L P+Q EG+ ++ C S +A ILAD+MGLGKT+QS+ LY+L+ +G P
Sbjct: 602 LHPYQLEGLNWLRHCWSNGTDA------ILADEMGLGKTVQSLTFLYSLMKEGHCKGPF- 654
Query: 244 KKAIIVTPTSLVSNWEAEIKKW---------VGGRVQLIALCESTRDDVVSGIDS----- 289
+I P S + NWE E ++W VG R + L E V + S
Sbjct: 655 ---LIAAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKAS 711
Query: 290 --FTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRN------ 341
T VL+ SYET M + S E L+ DEAHRLKN+Q+L +N
Sbjct: 712 KMKTTENMKFHVLLTSYETINMDKTILSSIE-WGALVVDEAHRLKNNQSLFFKNLNEYTI 770
Query: 342 -------------DLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG 388
+LEE F ++NF + F + E K+
Sbjct: 771 HYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAFTAEF------------NEISKEDQ 818
Query: 389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI 448
IE+ L + +LRR A + +P K +V +L+ +Q + Y + + +
Sbjct: 819 IEKLHNL---LGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDALNV 875
Query: 449 SEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWT 508
Q ++ + LKK CNHP L G M+ G
Sbjct: 876 KNGGTQMSLMNVLMELKKCCNHPYLFVKAELEAPKEKNG-----------MYEG------ 918
Query: 509 GGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDG 568
A ++ SGK +L ++L L+ R+++ S T+ LD+ LC Y Y R+DG
Sbjct: 919 ---TALIKNSGKFVLLQKMLRKLKD-GGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDG 974
Query: 569 TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA 628
+ RQ ++ +N P +F+FLLS++AGG G+NL + ++++D DWNP ND QA +
Sbjct: 975 SIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFS 1034
Query: 629 RVWRDGQKKRVFIYRFLSTGTIEEKV 654
R R GQK +V IYRF++ ++EEK+
Sbjct: 1035 RAHRLGQKHKVMIYRFVTKKSVEEKI 1060
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
GN=Smarca2 PE=1 SV=1
Length = 1577
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 159/534 (29%), Positives = 245/534 (45%), Gaps = 70/534 (13%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 729 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRLN 778
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQL-IALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R +V + S VL+
Sbjct: 779 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS-----GKFNVLLT 833
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 834 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 892
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 893 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRP 949
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV------KRAISEETKQS 455
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + ++ +
Sbjct: 950 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGKGGAK 1008
Query: 456 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWV 515
++ I L+K+CNHP ++ I+ G+ + G G +
Sbjct: 1009 TLMNTIMQLRKICNHP-YMFQHIEESFAEHLGYSN--------------GVINGAE--LY 1051
Query: 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKR 575
SGK +L R+L LR T+ R++L T + + R + YLRLDGTT R
Sbjct: 1052 RASGKFELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDR 1110
Query: 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQ 635
L+ FN+P F+FLLS++AGG GLNL + +V+FD DWNP D QA R R GQ
Sbjct: 1111 AALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQ 1170
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFLST 685
+ V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1171 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQA 1224
>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens
GN=SMARCA2 PE=1 SV=2
Length = 1590
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 159/534 (29%), Positives = 245/534 (45%), Gaps = 70/534 (13%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
L+ +Q +G+++M + LN ILAD+MGLGKT+Q+IAL+ L+ + K +
Sbjct: 724 LKHYQLQGLEWMVSLYNNNLNG------ILADEMGLGKTIQTIALITYLM----EHKRLN 773
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQL-IALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
+I+ P S +SNW E KW V++ + R +V + S VL+
Sbjct: 774 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS-----GKFNVLLT 828
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKND-----QTLTN---------------RND 342
+YE + + +I DE HR+KN Q L +N
Sbjct: 829 TYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 887
Query: 343 LEEFFAMVNFTNPGILGDAAYFRRYYETSI-ICGREPTATEEEKKLGIERSSELSAKVNQ 401
L E +A++NF P I + F +++ + G EEE L I R L +
Sbjct: 888 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRP 944
Query: 402 FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV------KRAISEETKQS 455
F+LRR + + LP K+ V+ C ++ LQ LY H + +K + ++ +
Sbjct: 945 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGILLTDGSEKDKKGKGGAK 1003
Query: 456 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWV 515
++ I L+K+CNHP ++ I+ G+ + G G +
Sbjct: 1004 TLMNTIMQLRKICNHP-YMFQHIEESFAEHLGYSN--------------GVINGAE--LY 1046
Query: 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKR 575
SGK +L R+L LR T+ R++L T + + R + YLRLDGTT R
Sbjct: 1047 RASGKFELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDR 1105
Query: 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQ 635
L+ FN+P F+FLLS++AGG GLNL + +V+FD DWNP D QA R R GQ
Sbjct: 1106 AALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQ 1165
Query: 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGL-QKVIQQ---EQTDSSATQGNFLST 685
+ V + R + ++EEK+ K + QKVIQ +Q SS + FL
Sbjct: 1166 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQA 1219
>sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7
PE=2 SV=1
Length = 3011
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 166/543 (30%), Positives = 259/543 (47%), Gaps = 80/543 (14%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N CILAD+MGLGKT+QSI LY + +G G
Sbjct: 969 LREYQLEGVNWL------LFNWYNTRNCILADEMGLGKTIQSITFLYEIYLKGIHGP--- 1019
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + F DP +V+ S
Sbjct: 1020 --FLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG--RVIKGS 1075
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKNDQT----------------L 337
Y+ TF M + C E ++ ++ DEAHRLKN L
Sbjct: 1076 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 1133
Query: 338 TN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE 394
T +N +EE F++++F PG R ET+ + TEE+ + +
Sbjct: 1134 TGTPLQNTVEELFSLLHFLEPG--------RFPSETTFMQEFGDLKTEEQVQ-------K 1178
Query: 395 LSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQ 454
L A + +LRR + +L PK ++ +LT +Q + Y + KN +S+ Q
Sbjct: 1179 LQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFA-FLSKGGGQ 1236
Query: 455 SKI---LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGD 511
+ + L + L+K CNHP LI G E+ I E + S +
Sbjct: 1237 ANVPNLLNTMMELRKCCNHPYLI-----------NGAEEKILEEFKETHNADSPDFQLQ- 1284
Query: 512 GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571
A ++ +GK+ ++ +LL L+ R+++ S + LD+ +RRYPY R+DG
Sbjct: 1285 -AMIQAAGKLVLIDKLLPKLKA-GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVR 1342
Query: 572 ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
+ RQ ++ F+ P + FVFLL ++AGG G+NL + ++FD DWNP ND QA AR
Sbjct: 1343 GNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 1402
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK-VIQQEQTDSSATQG-NFLSTEDLR 689
R GQ K V IYR ++ + E +++ + K GL K V+Q +AT G LS +++
Sbjct: 1403 RIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1462
Query: 690 DLF 692
DL
Sbjct: 1463 DLL 1465
>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7
PE=1 SV=3
Length = 2997
Score = 206 bits (525), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 165/543 (30%), Positives = 259/543 (47%), Gaps = 80/543 (14%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N + CILAD+MGLGKT+QSI LY + +G G
Sbjct: 968 LREYQLEGVNWL------LFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGP--- 1018
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + F DP +V+ S
Sbjct: 1019 --FLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG--RVIKGS 1074
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKNDQT----------------L 337
Y+ TF M + C E ++ ++ DEAHRLKN L
Sbjct: 1075 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 1132
Query: 338 TN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE 394
T +N +EE F++++F P R ET+ + TEE+ + +
Sbjct: 1133 TGTPLQNTVEELFSLLHFLEPS--------RFPSETTFMQEFGDLKTEEQVQ-------K 1177
Query: 395 LSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQ 454
L A + +LRR + +L PK ++ +LT +Q + Y + KN +S+ Q
Sbjct: 1178 LQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFT-FLSKGGGQ 1235
Query: 455 SKI---LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGD 511
+ + L + L+K CNHP LI G E+ I E + S +
Sbjct: 1236 ANVPNLLNTMMELRKCCNHPYLI-----------NGAEEKILEEFKETHNAESPDFQLQ- 1283
Query: 512 GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571
A ++ +GK+ ++ +LL L+ R+++ S + LD+ +RRYPY R+DG
Sbjct: 1284 -AMIQAAGKLVLIDKLLPKLKA-GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVR 1341
Query: 572 ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
+ RQ ++ F+ P + FVFLL ++AGG G+NL + ++FD DWNP ND QA AR
Sbjct: 1342 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 1401
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK-VIQQEQTDSSATQG-NFLSTEDLR 689
R GQ K V IYR ++ + E +++ + K GL K V+Q +AT G LS +++
Sbjct: 1402 RIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1461
Query: 690 DLF 692
DL
Sbjct: 1462 DLL 1464
>sp|A2AJK6|CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7
PE=1 SV=1
Length = 2986
Score = 206 bits (524), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 165/543 (30%), Positives = 259/543 (47%), Gaps = 80/543 (14%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMV 243
LR +Q EGV ++ L N + CILAD+MGLGKT+QSI LY + +G G
Sbjct: 958 LREYQLEGVNWL------LFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGP--- 1008
Query: 244 KKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVS 303
+++ P S + NWE E + W V + +++R + F DP +V+ S
Sbjct: 1009 --FLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQG--RVIKGS 1064
Query: 304 YE------TFRMHSSKFSCSESCDL----LICDEAHRLKNDQT----------------L 337
Y+ TF M + C E ++ ++ DEAHRLKN L
Sbjct: 1065 YKFHAIITTFEMILT--DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLL 1122
Query: 338 TN---RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE 394
T +N +EE F++++F P R ET+ + TEE+ + +
Sbjct: 1123 TGTPLQNTVEELFSLLHFLEPS--------RFPSETTFMQEFGDLKTEEQVQ-------K 1167
Query: 395 LSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQ 454
L A + +LRR + +L PK ++ +LT +Q + Y + KN +S+ Q
Sbjct: 1168 LQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILE-KNFT-FLSKGGGQ 1225
Query: 455 SKI---LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGD 511
+ + L + L+K CNHP LI G E+ I E + S +
Sbjct: 1226 ANVPNLLNTMMELRKCCNHPYLI-----------NGAEEKILEEFKETHNAESPDFQLQ- 1273
Query: 512 GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571
A ++ +GK+ ++ +LL L+ R+++ S + LD+ +RRYPY R+DG
Sbjct: 1274 -AMIQAAGKLVLIDKLLPKLKA-GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVR 1331
Query: 572 ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
+ RQ ++ F+ P + FVFLL ++AGG G+NL + ++FD DWNP ND QA AR
Sbjct: 1332 GNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 1391
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK-VIQQEQTDSSATQG-NFLSTEDLR 689
R GQ K V IYR ++ + E +++ + K GL K V+Q +AT G LS +++
Sbjct: 1392 RIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1451
Query: 690 DLF 692
DL
Sbjct: 1452 DLL 1454
>sp|P28370|SMCA1_HUMAN Probable global transcription activator SNF2L1 OS=Homo sapiens
GN=SMARCA1 PE=1 SV=2
Length = 1054
Score = 206 bits (523), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 166/537 (30%), Positives = 250/537 (46%), Gaps = 86/537 (16%)
Query: 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPM 242
LR +Q G+ ++ L G++G ILAD+MGLGKTLQ+IALL Y + G M
Sbjct: 183 LRDYQIRGLNWLIS-----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYRNIPGPHM 236
Query: 243 VKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIV 302
V + P S + NW E K+WV L +C D + V +
Sbjct: 237 V-----LVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVT 288
Query: 303 SYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL----------TNR---------NDL 343
SYE S F L+ DEAHR+KN+++ TNR N+L
Sbjct: 289 SYEMVIKEKSVFK-KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNL 347
Query: 344 EEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403
E +A++NF P + A F +++T G ++KL +ER L A + F+
Sbjct: 348 HELWALLNFLLPDVFNSADDFDSWFDTKNCLG--------DQKL-VER---LHAVLKPFL 395
Query: 404 LRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITA 463
LRR + LPPK + L+ +Q E Y + S + + ++L +
Sbjct: 396 LRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQ 455
Query: 464 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHV 523
L+K CNHP L +D + G P TT D V SGKM V
Sbjct: 456 LRKCCNHPYL-FDGAEPGPPYTT------------------------DEHIVSNSGKMVV 490
Query: 524 LARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ------- 576
L +LL L+++ R+++ S T+ LD+ C R Y Y RLDG T +R+
Sbjct: 491 LDKLLAKLKEQ-GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVE 549
Query: 577 -----KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
+ + FN P+ ++F+F+LS++AGG G+NL + ++L+D DWNP D QA R
Sbjct: 550 FLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAH 609
Query: 632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDL 688
R GQKK V ++R ++ T+EE++ +R K L ++ Q Q Q N L+ E++
Sbjct: 610 RIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ-QGRLIDQQSNKLAKEEM 665
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,582,165
Number of Sequences: 539616
Number of extensions: 15663299
Number of successful extensions: 68413
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 288
Number of HSP's that attempted gapping in prelim test: 52936
Number of HSP's gapped (non-prelim): 12256
length of query: 911
length of database: 191,569,459
effective HSP length: 127
effective length of query: 784
effective length of database: 123,038,227
effective search space: 96461969968
effective search space used: 96461969968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)