Query 043990
Match_columns 911
No_of_seqs 594 out of 2702
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0390 DNA repair protein, SN 100.0 9E-93 2E-97 828.4 44.6 520 172-715 227-770 (776)
2 KOG0387 Transcription-coupled 100.0 1.1E-92 2.4E-97 803.4 42.7 477 173-696 195-701 (923)
3 KOG0385 Chromatin remodeling c 100.0 5.6E-88 1.2E-92 760.8 38.6 466 177-697 160-647 (971)
4 KOG0392 SNF2 family DNA-depend 100.0 3.6E-84 7.7E-89 755.8 36.4 490 169-694 961-1496(1549)
5 PLN03142 Probable chromatin-re 100.0 1.2E-80 2.6E-85 758.7 47.9 466 175-697 161-645 (1033)
6 KOG0384 Chromodomain-helicase 100.0 5.5E-82 1.2E-86 742.1 33.1 468 182-696 369-860 (1373)
7 KOG0391 SNF2 family DNA-depend 100.0 2.9E-80 6.3E-85 713.2 36.8 499 171-695 603-1430(1958)
8 KOG0389 SNF2 family DNA-depend 100.0 4.5E-78 9.8E-83 683.4 34.1 463 183-673 399-913 (941)
9 KOG1015 Transcription regulato 100.0 3.3E-77 7.2E-82 678.7 33.2 514 172-698 657-1322(1567)
10 KOG0388 SNF2 family DNA-depend 100.0 2.8E-74 6.1E-79 640.4 31.0 470 173-672 557-1178(1185)
11 KOG0386 Chromatin remodeling c 100.0 1.1E-70 2.4E-75 636.1 25.7 446 181-671 392-861 (1157)
12 KOG1002 Nucleotide excision re 100.0 4.4E-69 9.5E-74 581.0 35.3 489 173-693 174-790 (791)
13 KOG4439 RNA polymerase II tran 100.0 2.1E-67 4.5E-72 589.2 32.0 479 174-694 316-901 (901)
14 KOG1016 Predicted DNA helicase 100.0 1.7E-64 3.6E-69 565.3 25.1 519 172-706 243-901 (1387)
15 COG0553 HepA Superfamily II DN 100.0 1.8E-59 4E-64 588.7 38.7 483 178-694 333-865 (866)
16 KOG1000 Chromatin remodeling p 100.0 3.8E-54 8.2E-59 466.7 34.3 410 174-668 189-623 (689)
17 PRK04914 ATP-dependent helicas 100.0 1.7E-51 3.8E-56 501.8 31.1 411 180-666 149-623 (956)
18 KOG1001 Helicase-like transcri 100.0 3.7E-47 8E-52 448.7 26.3 455 188-670 135-672 (674)
19 KOG0383 Predicted helicase [Ge 100.0 7.6E-40 1.6E-44 381.1 8.7 367 182-602 294-696 (696)
20 TIGR00603 rad25 DNA repair hel 100.0 7E-35 1.5E-39 345.5 31.6 344 181-657 253-616 (732)
21 PF00176 SNF2_N: SNF2 family N 100.0 3.2E-35 6.9E-40 323.3 22.3 267 187-474 1-299 (299)
22 PRK13766 Hef nuclease; Provisi 100.0 1.7E-31 3.8E-36 331.0 35.6 436 183-665 15-496 (773)
23 COG1111 MPH1 ERCC4-like helica 100.0 1.1E-27 2.5E-32 264.6 34.9 424 183-666 15-499 (542)
24 KOG0338 ATP-dependent RNA heli 100.0 9.7E-30 2.1E-34 278.1 15.4 352 112-655 180-538 (691)
25 COG1061 SSL2 DNA or RNA helica 100.0 1.3E-26 2.8E-31 267.9 30.0 366 179-660 32-406 (442)
26 KOG0298 DEAD box-containing he 100.0 7.8E-28 1.7E-32 286.7 19.5 243 211-473 377-690 (1394)
27 PHA02558 uvsW UvsW helicase; P 99.9 8E-26 1.7E-30 266.1 31.7 338 182-648 113-455 (501)
28 PTZ00110 helicase; Provisional 99.9 1.8E-24 3.8E-29 256.7 32.1 327 183-648 152-484 (545)
29 KOG0331 ATP-dependent RNA heli 99.9 7E-25 1.5E-29 248.9 25.6 321 186-642 116-444 (519)
30 PRK04537 ATP-dependent RNA hel 99.9 1E-23 2.2E-28 251.2 31.6 317 184-641 32-359 (572)
31 PRK04837 ATP-dependent RNA hel 99.9 1E-23 2.2E-28 244.1 30.6 320 185-647 32-361 (423)
32 PRK10590 ATP-dependent RNA hel 99.9 1.7E-24 3.6E-29 252.7 23.4 317 184-641 24-347 (456)
33 PRK11192 ATP-dependent RNA hel 99.9 1.9E-23 4.2E-28 242.6 31.9 321 184-642 24-348 (434)
34 PRK01297 ATP-dependent RNA hel 99.9 4.9E-24 1.1E-28 250.2 26.6 319 183-641 109-437 (475)
35 PLN00206 DEAD-box ATP-dependen 99.9 8.2E-24 1.8E-28 250.1 24.3 324 183-647 143-474 (518)
36 PRK11776 ATP-dependent RNA hel 99.9 3.9E-23 8.4E-28 241.8 29.8 317 184-648 27-349 (460)
37 KOG0354 DEAD-box like helicase 99.9 6.5E-23 1.4E-27 239.3 30.8 434 183-666 62-546 (746)
38 KOG0330 ATP-dependent RNA heli 99.9 1.8E-23 4E-28 223.4 20.8 324 186-658 86-415 (476)
39 PRK11634 ATP-dependent RNA hel 99.9 1.8E-22 4E-27 241.9 31.5 314 184-642 29-348 (629)
40 TIGR00614 recQ_fam ATP-depende 99.9 1.3E-22 2.8E-27 237.5 29.2 105 535-642 225-329 (470)
41 KOG1123 RNA polymerase II tran 99.9 3.8E-23 8.2E-28 225.8 18.8 339 180-653 299-658 (776)
42 PTZ00424 helicase 45; Provisio 99.9 1.8E-21 4E-26 223.8 30.8 121 520-648 254-374 (401)
43 TIGR01389 recQ ATP-dependent D 99.9 9.4E-22 2E-26 236.7 28.3 312 183-642 13-327 (591)
44 PRK11057 ATP-dependent DNA hel 99.9 1E-21 2.3E-26 236.1 25.7 111 528-641 228-338 (607)
45 PLN03137 ATP-dependent DNA hel 99.9 8.7E-22 1.9E-26 239.4 24.0 105 536-643 680-784 (1195)
46 COG0513 SrmB Superfamily II DN 99.9 3.7E-21 8E-26 226.4 28.6 329 186-660 54-391 (513)
47 TIGR03817 DECH_helic helicase/ 99.9 2.6E-20 5.7E-25 227.5 30.8 342 183-655 36-393 (742)
48 KOG0333 U5 snRNP-like RNA heli 99.9 6.9E-21 1.5E-25 210.0 18.3 343 185-642 269-620 (673)
49 PRK11448 hsdR type I restricti 99.9 1.2E-19 2.5E-24 227.8 29.7 115 527-645 689-815 (1123)
50 TIGR00643 recG ATP-dependent D 99.8 2.1E-19 4.7E-24 217.1 29.7 317 180-642 232-562 (630)
51 TIGR00580 mfd transcription-re 99.8 6.8E-20 1.5E-24 226.1 23.0 311 182-647 450-769 (926)
52 PRK10917 ATP-dependent DNA hel 99.8 6E-19 1.3E-23 214.6 30.6 313 180-641 258-584 (681)
53 KOG0350 DEAD-box ATP-dependent 99.8 1.6E-20 3.6E-25 206.2 13.8 380 179-661 155-551 (620)
54 PRK13767 ATP-dependent helicas 99.8 2.1E-19 4.5E-24 223.8 24.1 106 535-643 283-395 (876)
55 PRK02362 ski2-like helicase; P 99.8 1.7E-18 3.8E-23 213.2 31.0 110 535-647 242-396 (737)
56 PRK10689 transcription-repair 99.8 1.2E-18 2.5E-23 219.6 29.8 309 182-640 599-913 (1147)
57 KOG0328 Predicted ATP-dependen 99.8 1.2E-19 2.7E-24 186.7 13.2 319 186-651 52-376 (400)
58 KOG0345 ATP-dependent RNA heli 99.8 1.6E-18 3.5E-23 189.7 22.2 320 185-642 30-360 (567)
59 PRK01172 ski2-like helicase; P 99.8 9.5E-18 2.1E-22 205.2 30.3 107 535-645 235-375 (674)
60 KOG0342 ATP-dependent RNA heli 99.8 6.6E-19 1.4E-23 194.1 16.7 312 186-637 107-428 (543)
61 KOG0335 ATP-dependent RNA heli 99.8 7.6E-19 1.6E-23 196.8 16.9 324 184-642 97-440 (482)
62 KOG0347 RNA helicase [RNA proc 99.8 2.4E-18 5.1E-23 191.0 20.1 97 536-635 463-559 (731)
63 TIGR01587 cas3_core CRISPR-ass 99.8 6.1E-18 1.3E-22 191.7 23.2 133 519-659 207-352 (358)
64 KOG0343 RNA Helicase [RNA proc 99.8 8.3E-18 1.8E-22 186.6 22.3 333 185-661 93-434 (758)
65 KOG0348 ATP-dependent RNA heli 99.8 2.5E-17 5.4E-22 182.4 25.5 129 518-651 404-557 (708)
66 TIGR02621 cas3_GSU0051 CRISPR- 99.8 6.8E-18 1.5E-22 203.2 22.9 120 520-644 256-390 (844)
67 KOG0340 ATP-dependent RNA heli 99.8 6.5E-18 1.4E-22 179.3 17.8 314 186-638 32-353 (442)
68 PRK00254 ski2-like helicase; P 99.8 1.6E-16 3.4E-21 195.5 31.4 130 182-334 22-153 (720)
69 TIGR03714 secA2 accessory Sec 99.8 2E-17 4.3E-22 197.4 22.3 123 513-642 402-533 (762)
70 KOG0341 DEAD-box protein abstr 99.7 3.8E-18 8.1E-23 182.0 10.0 130 518-656 407-536 (610)
71 PRK09200 preprotein translocas 99.7 3.8E-16 8.2E-21 188.2 27.9 133 514-657 407-547 (790)
72 KOG0339 ATP-dependent RNA heli 99.7 2E-16 4.3E-21 174.1 22.1 325 186-651 248-578 (731)
73 KOG0336 ATP-dependent RNA heli 99.7 2E-17 4.3E-22 177.7 11.4 303 209-639 258-565 (629)
74 KOG0326 ATP-dependent RNA heli 99.7 2E-17 4.3E-22 173.0 10.8 301 186-636 110-419 (459)
75 COG0514 RecQ Superfamily II DN 99.7 6.3E-16 1.4E-20 179.4 22.0 316 183-649 17-338 (590)
76 PRK09401 reverse gyrase; Revie 99.7 1.8E-15 3.9E-20 191.4 27.6 103 519-633 315-431 (1176)
77 TIGR00963 secA preprotein tran 99.7 1.7E-15 3.8E-20 179.8 25.4 122 515-642 385-513 (745)
78 TIGR00348 hsdR type I site-spe 99.7 3.4E-15 7.3E-20 181.2 27.7 138 181-332 236-378 (667)
79 COG4096 HsdR Type I site-speci 99.7 4.1E-16 8.9E-21 182.2 18.8 352 172-645 154-545 (875)
80 KOG0346 RNA helicase [RNA proc 99.7 8.8E-16 1.9E-20 166.9 17.6 319 186-642 44-406 (569)
81 PRK12898 secA preprotein trans 99.7 1.1E-14 2.4E-19 172.1 28.4 134 516-660 454-595 (656)
82 KOG4284 DEAD box protein [Tran 99.7 1.3E-16 2.7E-21 179.6 10.6 316 186-638 50-371 (980)
83 COG1201 Lhr Lhr-like helicases 99.7 1.3E-14 2.7E-19 174.3 27.8 346 182-662 21-374 (814)
84 KOG0334 RNA helicase [RNA proc 99.7 7E-15 1.5E-19 175.6 25.3 124 517-647 596-719 (997)
85 cd00079 HELICc Helicase superf 99.7 4.1E-16 8.8E-21 149.5 11.9 120 519-642 12-131 (131)
86 PHA02653 RNA helicase NPH-II; 99.7 2.5E-14 5.4E-19 171.6 28.9 108 535-650 394-516 (675)
87 PRK09751 putative ATP-dependen 99.7 6.1E-15 1.3E-19 187.3 24.8 103 526-633 236-371 (1490)
88 KOG0332 ATP-dependent RNA heli 99.7 8.2E-15 1.8E-19 156.7 21.0 123 518-648 315-443 (477)
89 COG1205 Distinct helicase fami 99.6 7.2E-15 1.6E-19 180.8 22.3 342 183-655 70-429 (851)
90 TIGR03158 cas3_cyano CRISPR-as 99.6 2.9E-14 6.2E-19 161.3 25.1 86 534-631 270-357 (357)
91 KOG0344 ATP-dependent RNA heli 99.6 3.1E-15 6.6E-20 169.0 15.9 119 518-642 372-492 (593)
92 COG4889 Predicted helicase [Ge 99.6 7.1E-15 1.5E-19 169.8 18.7 395 173-645 151-585 (1518)
93 TIGR01054 rgy reverse gyrase. 99.6 7.9E-14 1.7E-18 176.9 26.1 317 183-618 78-409 (1171)
94 TIGR01970 DEAH_box_HrpB ATP-de 99.6 1.3E-13 2.7E-18 169.3 26.2 108 535-648 208-336 (819)
95 PRK05580 primosome assembly pr 99.6 6.3E-13 1.4E-17 161.7 31.4 94 548-644 438-547 (679)
96 PRK14701 reverse gyrase; Provi 99.6 1.4E-13 3E-18 178.0 26.0 103 522-636 320-446 (1638)
97 COG1200 RecG RecG-like helicas 99.6 3.1E-13 6.8E-18 156.7 24.1 310 182-642 261-587 (677)
98 PF00271 Helicase_C: Helicase 99.6 6.3E-15 1.4E-19 129.0 7.1 78 554-634 1-78 (78)
99 PRK11664 ATP-dependent RNA hel 99.5 1.3E-13 2.8E-18 169.6 19.4 110 535-650 211-341 (812)
100 COG1202 Superfamily II helicas 99.5 2.7E-13 5.7E-18 151.9 19.8 335 172-648 197-553 (830)
101 COG1204 Superfamily II helicas 99.5 2.3E-13 4.9E-18 165.5 21.0 127 183-334 31-161 (766)
102 KOG0337 ATP-dependent RNA heli 99.5 2.7E-14 5.9E-19 154.9 10.5 317 186-647 46-367 (529)
103 PRK13104 secA preprotein trans 99.5 2E-12 4.3E-17 156.1 27.4 124 513-642 422-583 (896)
104 TIGR00595 priA primosomal prot 99.5 5.3E-13 1.1E-17 156.9 19.1 92 549-643 271-378 (505)
105 KOG0327 Translation initiation 99.5 8.5E-14 1.8E-18 150.5 10.4 110 520-637 252-361 (397)
106 PRK12906 secA preprotein trans 99.5 5.9E-12 1.3E-16 151.3 24.9 122 515-642 420-549 (796)
107 COG1197 Mfd Transcription-repa 99.4 7.1E-12 1.5E-16 153.0 23.3 309 184-647 595-912 (1139)
108 TIGR00631 uvrb excinuclease AB 99.4 3.2E-11 7E-16 145.3 28.6 134 517-657 424-564 (655)
109 PRK11131 ATP-dependent RNA hel 99.4 1.2E-11 2.6E-16 155.2 25.2 122 521-650 271-413 (1294)
110 PRK09694 helicase Cas3; Provis 99.4 7E-11 1.5E-15 145.5 31.6 110 522-636 548-665 (878)
111 PRK12904 preprotein translocas 99.4 2.4E-11 5.3E-16 146.6 26.1 122 515-642 410-569 (830)
112 smart00490 HELICc helicase sup 99.4 3.9E-13 8.6E-18 117.7 7.9 81 551-634 2-82 (82)
113 PRK13107 preprotein translocas 99.4 6E-11 1.3E-15 143.0 28.2 124 513-642 427-587 (908)
114 PF04851 ResIII: Type III rest 99.4 2.7E-12 5.9E-17 130.3 11.0 137 183-333 3-160 (184)
115 TIGR01967 DEAH_box_HrpA ATP-de 99.4 9E-11 1.9E-15 148.0 26.4 124 520-651 263-407 (1283)
116 PRK05298 excinuclease ABC subu 99.3 9.5E-11 2.1E-15 142.1 24.7 124 517-647 428-556 (652)
117 KOG0351 ATP-dependent DNA heli 99.3 1.6E-11 3.4E-16 150.8 13.9 108 534-644 483-590 (941)
118 PRK12900 secA preprotein trans 99.3 1.1E-09 2.4E-14 132.7 28.5 122 514-641 577-706 (1025)
119 smart00487 DEXDc DEAD-like hel 99.2 8.9E-11 1.9E-15 119.7 11.8 133 182-333 7-143 (201)
120 PRK12899 secA preprotein trans 99.2 1.6E-08 3.4E-13 122.7 32.0 123 514-642 547-677 (970)
121 KOG0952 DNA/RNA helicase MER3/ 99.2 1.8E-09 3.9E-14 129.0 21.2 133 184-336 111-255 (1230)
122 COG4098 comFA Superfamily II D 99.1 3.8E-09 8.3E-14 112.9 21.1 115 523-643 293-413 (441)
123 KOG0352 ATP-dependent DNA heli 99.1 6E-10 1.3E-14 121.4 14.7 103 538-643 257-359 (641)
124 PF11496 HDA2-3: Class II hist 99.1 1.9E-09 4.2E-14 117.8 18.1 219 420-661 5-258 (297)
125 COG0556 UvrB Helicase subunit 99.1 2.1E-08 4.5E-13 112.9 26.2 139 519-661 427-572 (663)
126 COG1203 CRISPR-associated heli 99.1 3.5E-09 7.6E-14 130.4 21.9 127 535-664 439-568 (733)
127 TIGR01407 dinG_rel DnaQ family 99.1 2.3E-08 5E-13 125.6 28.8 111 523-639 661-807 (850)
128 cd00046 DEXDc DEAD-like helica 99.1 4.8E-10 1E-14 107.4 10.8 117 210-336 2-120 (144)
129 cd00268 DEADc DEAD-box helicas 99.0 2.3E-09 5E-14 111.4 13.1 134 183-333 21-157 (203)
130 PRK12326 preprotein translocas 99.0 4.8E-08 1E-12 115.8 23.6 124 513-642 405-543 (764)
131 PRK13103 secA preprotein trans 99.0 8.4E-08 1.8E-12 116.3 25.3 124 513-642 427-587 (913)
132 KOG0951 RNA helicase BRR2, DEA 98.9 4.4E-08 9.5E-13 118.8 20.2 116 208-331 325-449 (1674)
133 KOG0349 Putative DEAD-box RNA 98.9 3.2E-09 6.9E-14 115.8 9.3 103 528-633 497-602 (725)
134 PF00270 DEAD: DEAD/DEAH box h 98.9 8.5E-09 1.8E-13 103.5 11.5 127 186-333 2-133 (169)
135 PF13872 AAA_34: P-loop contai 98.9 1.4E-08 3E-13 109.4 12.9 142 181-336 35-189 (303)
136 KOG0329 ATP-dependent RNA heli 98.9 4.5E-08 9.7E-13 100.7 15.4 274 186-638 67-347 (387)
137 KOG0353 ATP-dependent DNA heli 98.8 6.3E-08 1.4E-12 104.1 14.6 108 535-645 316-466 (695)
138 PRK12903 secA preprotein trans 98.8 1.5E-06 3.3E-11 104.7 26.5 124 513-642 404-535 (925)
139 COG1110 Reverse gyrase [DNA re 98.7 3.8E-06 8.2E-11 101.4 27.3 142 183-352 82-231 (1187)
140 KOG0947 Cytoplasmic exosomal R 98.7 2.2E-06 4.8E-11 102.1 22.6 119 184-334 298-418 (1248)
141 KOG1513 Nuclear helicase MOP-3 98.6 5.9E-07 1.3E-11 104.5 16.9 148 176-333 257-419 (1300)
142 TIGR00596 rad1 DNA repair prot 98.6 1.2E-06 2.5E-11 107.7 20.0 147 516-665 267-531 (814)
143 CHL00122 secA preprotein trans 98.5 2.1E-05 4.5E-10 95.6 25.7 86 515-605 404-490 (870)
144 KOG0948 Nuclear exosomal RNA h 98.5 1.6E-06 3.4E-11 101.0 15.3 119 183-335 129-251 (1041)
145 KOG0953 Mitochondrial RNA heli 98.5 1.8E-06 3.8E-11 98.0 15.1 111 523-637 344-465 (700)
146 KOG0949 Predicted helicase, DE 98.5 1.2E-05 2.7E-10 96.1 22.5 129 186-336 514-649 (1330)
147 COG1198 PriA Primosomal protei 98.5 6.6E-06 1.4E-10 99.4 20.4 127 181-331 196-325 (730)
148 TIGR00604 rad3 DNA repair heli 98.5 3.1E-05 6.7E-10 95.8 26.8 71 184-264 11-82 (705)
149 PRK08074 bifunctional ATP-depe 98.5 0.00022 4.8E-09 90.6 34.4 94 522-618 738-835 (928)
150 PRK07246 bifunctional ATP-depe 98.5 1.6E-05 3.4E-10 99.3 23.5 88 523-617 635-724 (820)
151 COG4581 Superfamily II RNA hel 98.4 9.2E-06 2E-10 100.4 20.1 154 180-369 116-281 (1041)
152 TIGR03117 cas_csf4 CRISPR-asso 98.4 0.00027 5.9E-09 85.0 31.3 101 526-633 461-573 (636)
153 PF02399 Herpes_ori_bp: Origin 98.4 1.5E-05 3.2E-10 95.8 19.3 113 518-642 266-384 (824)
154 PRK12901 secA preprotein trans 98.4 8.2E-05 1.8E-09 91.4 25.6 123 514-642 607-737 (1112)
155 COG1199 DinG Rad3-related DNA 98.3 0.00017 3.6E-09 88.8 28.0 113 523-640 466-611 (654)
156 PRK12902 secA preprotein trans 98.3 0.00021 4.6E-09 87.0 27.7 88 514-606 418-506 (939)
157 COG1643 HrpA HrpA-like helicas 98.3 6.4E-05 1.4E-09 92.4 23.5 123 523-651 246-390 (845)
158 KOG0922 DEAH-box RNA helicase 98.3 0.0001 2.2E-09 86.2 22.1 113 535-650 257-392 (674)
159 KOG0950 DNA polymerase theta/e 98.2 2.9E-05 6.3E-10 93.5 16.7 132 186-333 215-355 (1008)
160 KOG0924 mRNA splicing factor A 98.2 4.1E-05 9E-10 88.6 17.0 107 560-669 597-721 (1042)
161 COG0610 Type I site-specific r 98.1 0.00027 5.8E-09 89.5 24.7 140 183-334 248-391 (962)
162 PRK15483 type III restriction- 98.1 2.2E-05 4.9E-10 96.8 13.1 69 589-658 501-577 (986)
163 PF13871 Helicase_C_4: Helicas 98.0 8.1E-06 1.8E-10 88.0 7.1 94 577-673 52-153 (278)
164 PF07652 Flavi_DEAD: Flaviviru 97.9 6.2E-05 1.3E-09 73.0 9.9 99 212-331 8-107 (148)
165 KOG0920 ATP-dependent RNA heli 97.9 0.00058 1.3E-08 84.0 20.2 124 519-648 395-544 (924)
166 smart00489 DEXDc3 DEAD-like he 97.8 0.00021 4.6E-09 78.7 12.5 74 185-265 10-84 (289)
167 smart00488 DEXDc2 DEAD-like he 97.8 0.00021 4.6E-09 78.7 12.5 74 185-265 10-84 (289)
168 KOG0923 mRNA splicing factor A 97.6 0.0018 3.8E-08 75.5 16.8 80 563-650 509-608 (902)
169 KOG0926 DEAH-box RNA helicase 97.6 0.0035 7.5E-08 74.5 19.2 64 581-647 622-703 (1172)
170 PF13086 AAA_11: AAA domain; P 97.4 0.00061 1.3E-08 71.7 9.1 72 183-264 1-75 (236)
171 TIGR02562 cas3_yersinia CRISPR 97.2 0.083 1.8E-06 66.2 25.7 47 588-637 837-883 (1110)
172 COG0653 SecA Preprotein transl 97.2 0.0076 1.7E-07 73.5 16.3 120 511-636 405-535 (822)
173 KOG0925 mRNA splicing factor A 97.0 0.019 4.1E-07 65.1 16.2 111 535-651 252-390 (699)
174 PF09848 DUF2075: Uncharacteri 96.5 0.0059 1.3E-07 69.3 7.7 91 212-333 5-97 (352)
175 PF07517 SecA_DEAD: SecA DEAD- 96.5 0.019 4.2E-07 62.2 11.1 122 183-332 77-210 (266)
176 KOG4150 Predicted ATP-dependen 96.3 0.018 4E-07 66.1 9.7 114 517-634 507-628 (1034)
177 PF13307 Helicase_C_2: Helicas 96.2 0.018 3.9E-07 58.2 8.7 77 535-618 8-92 (167)
178 PF02562 PhoH: PhoH-like prote 96.0 0.0031 6.6E-08 65.6 1.7 55 186-255 7-61 (205)
179 PRK14873 primosome assembly pr 96.0 0.017 3.7E-07 70.5 8.1 99 217-331 169-269 (665)
180 KOG1803 DNA helicase [Replicat 96.0 0.017 3.6E-07 67.6 7.5 68 179-262 181-249 (649)
181 PF13604 AAA_30: AAA domain; P 95.9 0.09 2E-06 54.6 12.2 57 184-255 2-58 (196)
182 PF12340 DUF3638: Protein of u 95.8 0.021 4.5E-07 60.2 6.8 74 182-268 22-95 (229)
183 PRK11747 dinG ATP-dependent DN 95.6 0.095 2.1E-06 64.9 12.8 90 521-618 520-616 (697)
184 KOG1805 DNA replication helica 95.4 0.036 7.8E-07 67.8 7.7 138 174-333 656-810 (1100)
185 PRK04296 thymidine kinase; Pro 95.4 0.024 5.2E-07 58.5 5.6 33 212-251 6-38 (190)
186 COG3587 Restriction endonuclea 95.3 0.057 1.2E-06 65.4 8.7 50 581-634 479-528 (985)
187 PRK10536 hypothetical protein; 95.2 0.056 1.2E-06 58.0 7.7 52 186-252 62-113 (262)
188 KOG1802 RNA helicase nonsense 94.8 0.08 1.7E-06 62.3 7.9 83 182-283 409-492 (935)
189 KOG1131 RNA polymerase II tran 94.3 0.46 1E-05 54.8 12.4 59 184-252 17-75 (755)
190 TIGR01447 recD exodeoxyribonuc 93.8 0.52 1.1E-05 57.1 12.4 58 186-255 148-205 (586)
191 COG0553 HepA Superfamily II DN 93.6 0.0089 1.9E-07 75.9 -3.1 74 181-267 82-157 (866)
192 TIGR01448 recD_rel helicase, p 93.6 0.53 1.1E-05 58.6 12.3 66 181-261 321-386 (720)
193 KOG1133 Helicase of the DEAD s 93.6 4 8.6E-05 49.1 18.5 95 522-619 615-721 (821)
194 KOG1132 Helicase of the DEAD s 93.5 0.24 5.3E-06 60.4 8.9 87 536-623 561-661 (945)
195 PRK08116 hypothetical protein; 93.3 0.38 8.3E-06 52.5 9.5 43 209-258 115-157 (268)
196 PRK11747 dinG ATP-dependent DN 93.3 0.76 1.6E-05 57.1 13.1 65 184-255 26-90 (697)
197 PRK10875 recD exonuclease V su 93.1 0.35 7.6E-06 58.8 9.5 59 185-256 154-212 (615)
198 PRK06835 DNA replication prote 92.8 0.56 1.2E-05 52.7 10.1 51 184-236 161-211 (329)
199 KOG0943 Predicted ubiquitin-pr 92.6 0.12 2.6E-06 63.6 4.5 10 188-197 2069-2078(3015)
200 PF06862 DUF1253: Protein of u 92.5 1.6 3.4E-05 50.8 13.2 128 518-647 280-414 (442)
201 COG3421 Uncharacterized protei 92.4 0.17 3.7E-06 59.2 5.1 109 215-333 4-126 (812)
202 cd00009 AAA The AAA+ (ATPases 92.0 0.76 1.6E-05 43.6 8.6 27 207-233 18-44 (151)
203 PF13401 AAA_22: AAA domain; P 91.7 0.15 3.3E-06 48.5 3.3 57 210-267 6-63 (131)
204 smart00382 AAA ATPases associa 91.6 0.2 4.4E-06 47.1 4.1 45 209-260 3-47 (148)
205 PF10446 DUF2457: Protein of u 91.5 0.14 3E-06 57.8 3.1 12 146-157 222-233 (458)
206 TIGR02881 spore_V_K stage V sp 91.4 0.5 1.1E-05 51.3 7.4 30 207-236 41-70 (261)
207 PRK06526 transposase; Provisio 91.3 0.58 1.3E-05 50.6 7.6 30 207-236 97-126 (254)
208 PF13245 AAA_19: Part of AAA d 91.2 0.61 1.3E-05 40.6 6.3 44 210-256 12-55 (76)
209 TIGR00376 DNA helicase, putati 91.2 0.77 1.7E-05 56.3 9.4 68 182-265 156-224 (637)
210 PTZ00112 origin recognition co 91.0 1.4 3E-05 54.8 11.0 48 184-234 759-807 (1164)
211 smart00492 HELICc3 helicase su 90.4 1.7 3.6E-05 42.7 9.2 53 563-618 25-79 (141)
212 KOG0951 RNA helicase BRR2, DEA 90.3 0.62 1.3E-05 58.9 7.3 104 208-333 1159-1267(1674)
213 smart00491 HELICc2 helicase su 90.1 1.2 2.6E-05 43.8 7.9 54 564-618 23-80 (142)
214 PRK07471 DNA polymerase III su 89.3 1.4 3E-05 50.4 8.8 62 188-252 24-88 (365)
215 PRK08181 transposase; Validate 89.0 2 4.3E-05 46.9 9.5 45 186-236 90-134 (269)
216 PRK05707 DNA polymerase III su 89.0 1.5 3.3E-05 49.3 8.8 48 184-237 4-51 (328)
217 PRK14087 dnaA chromosomal repl 88.8 1.8 4E-05 50.8 9.7 95 208-353 141-235 (450)
218 PRK06921 hypothetical protein; 88.0 1.7 3.6E-05 47.5 8.0 29 207-235 116-144 (266)
219 KOG0952 DNA/RNA helicase MER3/ 87.6 0.63 1.4E-05 57.9 4.8 110 209-334 944-1061(1230)
220 PRK09112 DNA polymerase III su 87.0 1.5 3.4E-05 49.7 7.3 45 188-235 28-72 (351)
221 TIGR03345 VI_ClpV1 type VI sec 87.0 2.9 6.3E-05 53.1 10.4 42 188-233 192-233 (852)
222 COG1435 Tdk Thymidine kinase [ 86.0 1.1 2.3E-05 46.1 4.7 88 212-332 8-95 (201)
223 TIGR02928 orc1/cdc6 family rep 85.9 4.1 8.9E-05 46.2 10.2 47 185-234 20-66 (365)
224 PRK14974 cell division protein 85.9 3.4 7.3E-05 46.6 9.2 108 211-356 143-254 (336)
225 PRK00771 signal recognition pa 85.7 3.1 6.6E-05 48.7 9.0 28 209-236 96-123 (437)
226 PRK08084 DNA replication initi 85.7 3.9 8.5E-05 43.6 9.3 28 208-235 45-72 (235)
227 PRK08727 hypothetical protein; 85.5 3.5 7.5E-05 44.0 8.7 28 209-236 42-69 (233)
228 KOG0780 Signal recognition par 85.4 1.4 3E-05 49.5 5.6 112 211-357 104-216 (483)
229 PF06733 DEAD_2: DEAD_2; Inte 85.4 0.68 1.5E-05 46.9 3.1 38 296-333 119-159 (174)
230 PRK14956 DNA polymerase III su 85.3 1.7 3.7E-05 51.1 6.6 27 209-235 41-67 (484)
231 TIGR02768 TraA_Ti Ti-type conj 85.2 5.2 0.00011 50.1 11.3 59 182-256 351-409 (744)
232 PF05621 TniB: Bacterial TniB 85.0 4.9 0.00011 44.3 9.6 134 186-353 40-175 (302)
233 TIGR03420 DnaA_homol_Hda DnaA 84.6 3.2 7E-05 43.5 8.0 29 207-235 37-65 (226)
234 PRK08769 DNA polymerase III su 84.6 2.8 6E-05 47.0 7.7 52 182-236 3-54 (319)
235 PRK07764 DNA polymerase III su 84.4 1.9 4.1E-05 54.3 6.9 28 208-235 37-64 (824)
236 COG1484 DnaC DNA replication p 84.4 3.3 7.1E-05 44.9 8.0 50 207-263 104-153 (254)
237 CHL00181 cbbX CbbX; Provisiona 84.3 2.8 6E-05 46.3 7.5 27 210-236 61-87 (287)
238 PRK07994 DNA polymerase III su 84.3 2.5 5.4E-05 51.7 7.7 27 209-235 39-65 (647)
239 PLN03025 replication factor C 84.2 3.7 8E-05 46.0 8.6 28 208-235 34-61 (319)
240 COG1875 NYN ribonuclease and A 84.1 1.6 3.4E-05 48.9 5.2 55 185-252 230-285 (436)
241 PRK09111 DNA polymerase III su 84.0 2.5 5.4E-05 51.4 7.5 30 208-237 46-75 (598)
242 PF00580 UvrD-helicase: UvrD/R 83.8 2.4 5.2E-05 46.6 6.9 67 185-266 2-69 (315)
243 cd01121 Sms Sms (bacterial rad 83.5 5.7 0.00012 45.5 9.8 46 210-262 84-129 (372)
244 PRK11889 flhF flagellar biosyn 83.5 7.8 0.00017 44.6 10.6 104 210-355 243-351 (436)
245 PTZ00293 thymidine kinase; Pro 83.2 1.1 2.5E-05 46.8 3.6 35 212-253 8-42 (211)
246 PRK06645 DNA polymerase III su 82.7 3.3 7.1E-05 49.3 7.7 29 208-236 43-71 (507)
247 PRK07952 DNA replication prote 82.7 4.2 9.1E-05 43.8 7.8 66 186-264 79-144 (244)
248 PRK00149 dnaA chromosomal repl 82.6 4.4 9.5E-05 47.7 8.7 50 208-262 148-197 (450)
249 PRK11054 helD DNA helicase IV; 82.5 4 8.6E-05 50.6 8.6 70 182-266 195-265 (684)
250 PRK14952 DNA polymerase III su 82.5 2.9 6.4E-05 50.6 7.3 27 209-235 36-62 (584)
251 PRK12422 chromosomal replicati 82.2 4.4 9.6E-05 47.6 8.5 29 208-236 141-169 (445)
252 PRK06871 DNA polymerase III su 81.8 4.7 0.0001 45.3 8.1 51 184-237 3-53 (325)
253 PRK14958 DNA polymerase III su 81.7 4.2 9.1E-05 48.6 8.1 27 209-235 39-65 (509)
254 PRK00411 cdc6 cell division co 81.6 5.3 0.00012 45.9 8.8 30 207-236 54-83 (394)
255 PF01695 IstB_IS21: IstB-like 81.4 3.2 6.9E-05 42.4 6.1 38 207-251 46-83 (178)
256 COG1222 RPT1 ATP-dependent 26S 81.3 4.2 9.2E-05 45.5 7.2 27 205-231 182-208 (406)
257 TIGR02639 ClpA ATP-dependent C 81.3 4 8.8E-05 51.1 8.2 30 206-235 201-230 (731)
258 PRK14960 DNA polymerase III su 81.2 3.6 7.8E-05 50.1 7.2 28 208-235 37-64 (702)
259 cd01120 RecA-like_NTPases RecA 81.1 6.6 0.00014 38.2 8.2 34 212-252 3-36 (165)
260 PRK14961 DNA polymerase III su 80.9 5.2 0.00011 45.7 8.3 44 188-234 21-64 (363)
261 PRK12723 flagellar biosynthesi 80.6 13 0.00027 42.9 11.2 107 210-355 176-285 (388)
262 PRK12323 DNA polymerase III su 80.4 2.5 5.5E-05 51.3 5.6 29 208-236 38-66 (700)
263 PRK07003 DNA polymerase III su 80.2 5.5 0.00012 49.2 8.4 45 188-235 21-65 (830)
264 PRK14955 DNA polymerase III su 79.8 6.2 0.00013 45.6 8.5 29 208-236 38-66 (397)
265 TIGR00595 priA primosomal prot 79.6 14 0.00031 44.1 11.6 95 516-615 6-101 (505)
266 PF00448 SRP54: SRP54-type pro 79.4 8 0.00017 40.1 8.4 35 211-252 4-38 (196)
267 CHL00095 clpC Clp protease ATP 79.2 5.7 0.00012 50.5 8.6 29 206-234 198-226 (821)
268 PRK05580 primosome assembly pr 79.1 17 0.00037 45.2 12.5 95 517-616 172-267 (679)
269 COG3267 ExeA Type II secretory 79.1 4.3 9.3E-05 43.5 6.2 46 211-264 54-105 (269)
270 PRK11823 DNA repair protein Ra 79.0 10 0.00022 44.7 10.0 48 210-264 82-129 (446)
271 PRK10865 protein disaggregatio 78.9 4.3 9.2E-05 51.7 7.3 39 191-233 186-224 (857)
272 PRK14086 dnaA chromosomal repl 78.9 7.9 0.00017 46.9 9.1 93 208-353 314-406 (617)
273 TIGR03346 chaperone_ClpB ATP-d 78.7 5 0.00011 51.2 7.9 42 188-233 178-219 (852)
274 PRK14949 DNA polymerase III su 78.6 4.9 0.00011 50.5 7.4 26 210-235 40-65 (944)
275 TIGR00362 DnaA chromosomal rep 78.4 5.5 0.00012 46.2 7.6 28 208-235 136-163 (405)
276 PRK06090 DNA polymerase III su 78.1 6.9 0.00015 43.8 7.9 52 183-237 3-54 (319)
277 PF00265 TK: Thymidine kinase; 78.1 1.5 3.3E-05 44.7 2.5 34 212-252 5-38 (176)
278 cd01124 KaiC KaiC is a circadi 78.1 5.3 0.00011 40.4 6.6 47 212-265 3-49 (187)
279 PRK07993 DNA polymerase III su 78.0 4.8 0.0001 45.4 6.7 51 184-237 3-53 (334)
280 PRK10917 ATP-dependent DNA hel 77.8 12 0.00027 46.4 10.8 95 517-615 292-391 (681)
281 PRK14969 DNA polymerase III su 77.7 9.1 0.0002 46.0 9.3 28 208-235 38-65 (527)
282 PRK14959 DNA polymerase III su 77.7 5.9 0.00013 48.2 7.6 28 208-235 38-65 (624)
283 PRK08760 replicative DNA helic 77.6 2.8 6E-05 49.7 4.9 49 211-265 232-280 (476)
284 PHA02533 17 large terminase pr 77.3 9.5 0.00021 45.9 9.2 55 183-252 59-113 (534)
285 PRK14963 DNA polymerase III su 77.3 8.4 0.00018 46.0 8.7 27 210-236 38-64 (504)
286 KOG0989 Replication factor C, 77.0 7.6 0.00017 42.7 7.4 45 186-234 39-83 (346)
287 PF04147 Nop14: Nop14-like fam 76.6 3.5 7.5E-05 52.3 5.5 32 222-259 542-574 (840)
288 PRK08939 primosomal protein Dn 76.5 8 0.00017 43.1 7.8 30 207-236 155-184 (306)
289 PRK05563 DNA polymerase III su 76.1 9.9 0.00021 46.1 9.0 29 208-236 38-66 (559)
290 PHA03333 putative ATPase subun 75.7 22 0.00048 43.5 11.5 35 212-252 191-225 (752)
291 PRK07133 DNA polymerase III su 75.4 6.8 0.00015 48.4 7.4 29 208-236 40-68 (725)
292 TIGR03689 pup_AAA proteasome A 75.4 4.8 0.0001 47.9 5.9 28 206-233 214-241 (512)
293 PRK14957 DNA polymerase III su 75.1 7.3 0.00016 46.9 7.4 28 208-235 38-65 (546)
294 PRK14951 DNA polymerase III su 75.0 5.7 0.00012 48.5 6.6 47 188-237 21-67 (618)
295 PRK14965 DNA polymerase III su 74.8 8 0.00017 47.0 7.8 28 208-235 38-65 (576)
296 PRK13889 conjugal transfer rel 74.5 14 0.00031 47.5 10.1 58 183-256 346-403 (988)
297 cd00984 DnaB_C DnaB helicase C 74.4 7.1 0.00015 41.5 6.6 36 211-252 16-51 (242)
298 PRK08691 DNA polymerase III su 74.2 6.1 0.00013 48.5 6.5 28 208-235 38-65 (709)
299 cd01122 GP4d_helicase GP4d_hel 74.1 11 0.00024 40.8 8.1 47 210-262 32-78 (271)
300 PRK14948 DNA polymerase III su 73.8 9.9 0.00021 46.6 8.3 46 188-236 21-66 (620)
301 PRK12377 putative replication 73.7 11 0.00023 40.8 7.6 63 187-258 82-144 (248)
302 PRK14962 DNA polymerase III su 73.2 8.8 0.00019 45.4 7.5 27 209-235 37-63 (472)
303 PF05707 Zot: Zonular occluden 72.8 2.9 6.3E-05 43.2 3.0 24 213-236 5-29 (193)
304 PRK14954 DNA polymerase III su 72.7 9.9 0.00021 46.5 7.9 46 188-236 21-66 (620)
305 PRK14964 DNA polymerase III su 72.6 9.6 0.00021 45.2 7.5 28 208-235 35-62 (491)
306 PF04147 Nop14: Nop14-like fam 72.3 2.7 5.8E-05 53.3 3.1 13 86-98 416-428 (840)
307 COG1474 CDC6 Cdc6-related prot 72.1 9.3 0.0002 43.7 7.1 50 184-236 21-70 (366)
308 PRK07940 DNA polymerase III su 71.4 9.9 0.00021 43.9 7.2 29 208-236 36-64 (394)
309 TIGR01075 uvrD DNA helicase II 71.2 16 0.00035 45.7 9.6 70 183-267 4-74 (715)
310 PF13177 DNA_pol3_delta2: DNA 70.7 13 0.00029 37.2 7.1 47 188-237 2-48 (162)
311 PRK12726 flagellar biosynthesi 70.6 42 0.00092 38.6 11.7 127 189-356 181-317 (407)
312 TIGR03015 pepcterm_ATPase puta 70.4 13 0.00029 40.0 7.7 42 186-232 26-67 (269)
313 PHA03368 DNA packaging termina 70.3 15 0.00032 44.8 8.3 109 208-334 254-367 (738)
314 TIGR03499 FlhF flagellar biosy 70.2 18 0.00039 39.8 8.6 26 210-235 196-221 (282)
315 PRK06321 replicative DNA helic 70.1 7.2 0.00016 46.1 5.8 47 211-263 229-275 (472)
316 PRK09165 replicative DNA helic 70.0 9.7 0.00021 45.4 6.9 123 211-334 220-356 (497)
317 COG0470 HolB ATPase involved i 70.0 6.5 0.00014 43.6 5.2 31 208-238 24-54 (325)
318 PRK06893 DNA replication initi 69.8 15 0.00032 39.0 7.6 27 210-236 41-67 (229)
319 PRK06731 flhF flagellar biosyn 69.6 38 0.00082 37.1 10.8 105 210-355 77-185 (270)
320 PRK10867 signal recognition pa 69.6 27 0.00059 40.8 10.3 26 210-235 102-127 (433)
321 PRK05642 DNA replication initi 69.2 18 0.00039 38.5 8.2 26 209-234 46-71 (234)
322 COG0464 SpoVK ATPases of the A 68.9 7.5 0.00016 46.3 5.7 75 182-266 248-324 (494)
323 cd03115 SRP The signal recogni 68.7 34 0.00074 34.2 9.8 25 212-236 4-28 (173)
324 PRK10919 ATP-dependent DNA hel 68.6 11 0.00024 46.8 7.2 69 184-267 3-72 (672)
325 TIGR00665 DnaB replicative DNA 68.4 12 0.00025 43.9 7.1 45 211-261 198-242 (434)
326 PRK05748 replicative DNA helic 68.3 6.9 0.00015 46.1 5.2 46 211-262 206-251 (448)
327 PRK05636 replicative DNA helic 68.0 7.2 0.00016 46.6 5.2 46 211-262 268-313 (505)
328 PHA03372 DNA packaging termina 68.0 14 0.0003 44.5 7.4 98 216-333 210-313 (668)
329 PRK08506 replicative DNA helic 67.8 6.6 0.00014 46.5 4.9 46 211-263 195-240 (472)
330 KOG0127 Nucleolar protein fibr 67.8 4.7 0.0001 46.9 3.4 13 62-74 291-303 (678)
331 PRK13826 Dtr system oriT relax 67.8 33 0.00072 44.6 11.3 58 183-256 381-438 (1102)
332 COG3973 Superfamily I DNA and 67.3 14 0.00031 44.1 7.2 50 212-262 230-279 (747)
333 TIGR00416 sms DNA repair prote 67.2 22 0.00048 41.9 9.0 48 210-264 96-143 (454)
334 TIGR03600 phage_DnaB phage rep 67.0 12 0.00026 43.6 6.9 44 211-261 197-241 (421)
335 PRK14950 DNA polymerase III su 66.7 14 0.0003 45.1 7.5 46 188-236 21-66 (585)
336 PHA02544 44 clamp loader, smal 66.3 34 0.00073 38.0 10.0 22 210-231 44-66 (316)
337 KOG0740 AAA+-type ATPase [Post 66.3 5.4 0.00012 46.1 3.6 50 207-266 185-234 (428)
338 TIGR00643 recG ATP-dependent D 66.0 30 0.00065 42.6 10.3 94 517-614 266-364 (630)
339 KOG0298 DEAD box-containing he 65.6 3.3 7.2E-05 52.8 1.8 141 519-666 1203-1344(1394)
340 PF06564 YhjQ: YhjQ protein; 65.3 8.8 0.00019 41.2 4.8 31 218-255 12-44 (243)
341 TIGR01243 CDC48 AAA family ATP 65.1 7.1 0.00015 49.0 4.7 42 207-258 486-527 (733)
342 PHA00012 I assembly protein 65.0 15 0.00032 41.1 6.4 23 214-236 7-29 (361)
343 PRK05595 replicative DNA helic 65.0 7.8 0.00017 45.5 4.8 46 211-263 204-250 (444)
344 PRK00440 rfc replication facto 64.9 29 0.00063 38.3 9.2 25 209-233 39-63 (319)
345 PF06745 KaiC: KaiC; InterPro 64.3 12 0.00027 39.3 5.8 50 209-265 20-70 (226)
346 PRK14873 primosome assembly pr 64.3 36 0.00077 42.2 10.3 77 518-598 171-249 (665)
347 PRK14722 flhF flagellar biosyn 64.2 33 0.00072 39.3 9.4 39 209-253 138-177 (374)
348 PRK11034 clpA ATP-dependent Cl 64.2 14 0.00031 46.3 7.0 28 207-234 206-233 (758)
349 TIGR02760 TraI_TIGR conjugativ 63.8 51 0.0011 46.0 12.6 59 182-255 428-486 (1960)
350 PHA00350 putative assembly pro 63.8 16 0.00034 42.2 6.6 21 216-236 9-30 (399)
351 PRK06647 DNA polymerase III su 63.6 28 0.0006 42.3 9.1 28 208-235 38-65 (563)
352 PRK08058 DNA polymerase III su 63.2 29 0.00062 39.1 8.7 47 187-236 10-56 (329)
353 PRK07004 replicative DNA helic 63.2 8.5 0.00018 45.5 4.6 46 211-262 216-261 (460)
354 KOG0738 AAA+-type ATPase [Post 62.9 13 0.00028 42.2 5.5 61 194-266 233-293 (491)
355 PF03796 DnaB_C: DnaB-like hel 62.0 9.4 0.0002 41.2 4.4 118 211-335 22-146 (259)
356 PRK05703 flhF flagellar biosyn 61.9 48 0.001 38.8 10.4 23 211-233 224-246 (424)
357 TIGR01074 rep ATP-dependent DN 61.8 19 0.00041 44.7 7.5 69 184-267 2-71 (664)
358 KOG0943 Predicted ubiquitin-pr 61.5 6.5 0.00014 49.4 3.1 11 686-696 2793-2803(3015)
359 PF05496 RuvB_N: Holliday junc 61.0 14 0.00031 39.1 5.2 23 208-230 50-72 (233)
360 PRK14953 DNA polymerase III su 60.8 39 0.00085 40.2 9.6 45 188-235 21-65 (486)
361 COG0541 Ffh Signal recognition 60.8 46 0.001 38.6 9.5 112 210-356 102-214 (451)
362 TIGR02880 cbbX_cfxQ probable R 60.7 26 0.00057 38.5 7.6 29 208-236 58-86 (284)
363 PRK08451 DNA polymerase III su 60.3 19 0.00041 43.3 6.7 27 209-235 37-63 (535)
364 PRK08006 replicative DNA helic 60.1 16 0.00035 43.3 6.1 47 211-263 227-273 (471)
365 TIGR00959 ffh signal recogniti 59.7 61 0.0013 37.9 10.7 25 209-233 100-124 (428)
366 KOG1807 Helicases [Replication 59.4 29 0.00063 42.6 7.9 83 183-278 378-461 (1025)
367 PRK11773 uvrD DNA-dependent he 59.4 22 0.00048 44.5 7.6 71 182-267 8-79 (721)
368 TIGR00064 ftsY signal recognit 58.9 50 0.0011 36.1 9.4 34 211-251 75-108 (272)
369 TIGR01425 SRP54_euk signal rec 58.6 74 0.0016 37.2 11.0 34 211-251 103-136 (429)
370 KOG2141 Protein involved in hi 58.6 7.1 0.00015 47.1 2.8 59 646-713 599-664 (822)
371 PRK13342 recombination factor 58.5 22 0.00049 41.3 7.0 25 207-231 35-59 (413)
372 COG0305 DnaB Replicative DNA h 58.1 16 0.00034 42.5 5.5 120 208-334 196-321 (435)
373 PRK05973 replicative DNA helic 58.0 15 0.00033 39.3 5.0 37 209-252 65-101 (237)
374 COG1198 PriA Primosomal protei 57.4 30 0.00064 43.0 7.9 136 515-656 225-367 (730)
375 COG3972 Superfamily I DNA and 56.9 51 0.0011 38.7 9.0 45 217-266 185-230 (660)
376 TIGR00678 holB DNA polymerase 56.8 18 0.0004 36.8 5.3 27 209-235 15-41 (188)
377 PRK06904 replicative DNA helic 56.5 21 0.00044 42.4 6.2 49 211-265 224-272 (472)
378 PRK07399 DNA polymerase III su 56.5 64 0.0014 36.1 9.9 46 188-236 9-54 (314)
379 TIGR01073 pcrA ATP-dependent D 55.9 37 0.0008 42.6 8.7 56 183-253 4-59 (726)
380 PF05876 Terminase_GpA: Phage 55.8 8.4 0.00018 46.6 2.9 71 182-266 15-87 (557)
381 TIGR02688 conserved hypothetic 55.8 33 0.00071 39.9 7.4 30 207-236 208-238 (449)
382 cd01125 repA Hexameric Replica 55.8 75 0.0016 33.8 10.0 56 211-266 4-67 (239)
383 COG2255 RuvB Holliday junction 54.9 17 0.00036 39.8 4.5 26 206-231 50-75 (332)
384 PRK13341 recombination factor 54.8 25 0.00054 43.9 6.8 25 207-231 51-75 (725)
385 COG0552 FtsY Signal recognitio 54.6 82 0.0018 35.4 10.0 112 210-357 141-254 (340)
386 PF06068 TIP49: TIP49 C-termin 54.3 16 0.00035 41.4 4.6 45 186-232 30-74 (398)
387 PF06309 Torsin: Torsin; Inte 54.1 78 0.0017 30.5 8.5 80 188-268 30-115 (127)
388 cd01129 PulE-GspE PulE/GspE Th 54.0 28 0.0006 37.9 6.3 41 184-232 64-104 (264)
389 TIGR02640 gas_vesic_GvpN gas v 53.6 29 0.00064 37.6 6.5 40 186-231 5-44 (262)
390 TIGR00580 mfd transcription-re 53.5 64 0.0014 41.6 10.3 94 517-614 482-580 (926)
391 TIGR03880 KaiC_arch_3 KaiC dom 53.4 33 0.00071 36.0 6.6 47 211-264 19-65 (224)
392 PF03354 Terminase_1: Phage Te 52.9 38 0.00082 40.2 7.7 60 186-252 1-63 (477)
393 CHL00095 clpC Clp protease ATP 52.8 24 0.00053 44.9 6.4 48 187-234 513-565 (821)
394 TIGR03877 thermo_KaiC_1 KaiC d 52.7 39 0.00085 36.0 7.2 43 208-257 21-63 (237)
395 PRK13833 conjugal transfer pro 52.1 40 0.00087 37.9 7.3 42 183-233 128-169 (323)
396 TIGR03881 KaiC_arch_4 KaiC dom 52.1 37 0.00081 35.7 6.8 45 210-261 22-66 (229)
397 PF00308 Bac_DnaA: Bacterial d 51.8 55 0.0012 34.5 8.0 29 208-236 34-62 (219)
398 TIGR02012 tigrfam_recA protein 51.6 38 0.00083 38.0 7.0 40 210-256 57-96 (321)
399 PRK07773 replicative DNA helic 51.3 26 0.00056 45.1 6.3 117 211-334 220-342 (886)
400 PRK08533 flagellar accessory p 50.8 40 0.00086 35.9 6.8 36 210-252 26-61 (230)
401 KOG4264 Nucleo-cytoplasmic pro 50.4 11 0.00024 43.6 2.5 43 220-262 223-267 (694)
402 PRK10416 signal recognition pa 49.6 96 0.0021 34.8 9.8 33 212-251 118-150 (318)
403 PF05970 PIF1: PIF1-like helic 49.0 34 0.00075 39.0 6.4 62 184-256 2-63 (364)
404 PF12846 AAA_10: AAA-like doma 48.9 33 0.00071 37.2 6.0 41 211-258 4-44 (304)
405 PF03115 Astro_capsid: Astrovi 48.2 6 0.00013 49.1 0.0 15 86-100 743-757 (787)
406 PRK10689 transcription-repair 48.2 94 0.002 41.1 10.7 94 517-613 631-728 (1147)
407 PRK06067 flagellar accessory p 47.8 50 0.0011 34.9 7.0 49 209-264 26-74 (234)
408 COG1224 TIP49 DNA helicase TIP 47.3 18 0.00038 40.8 3.4 27 206-232 63-89 (450)
409 KOG0739 AAA+-type ATPase [Post 47.0 29 0.00062 38.2 4.8 49 208-266 166-214 (439)
410 TIGR00347 bioD dethiobiotin sy 47.0 25 0.00054 34.9 4.3 25 212-236 2-26 (166)
411 PRK03992 proteasome-activating 46.9 29 0.00063 40.0 5.4 43 206-258 163-205 (389)
412 PRK08840 replicative DNA helic 46.7 32 0.00068 40.7 5.7 47 211-263 220-266 (464)
413 cd00983 recA RecA is a bacter 46.6 40 0.00086 37.9 6.1 38 211-255 58-95 (325)
414 TIGR03878 thermo_KaiC_2 KaiC d 46.3 44 0.00096 36.2 6.4 34 210-250 38-71 (259)
415 TIGR01281 DPOR_bchL light-inde 45.9 20 0.00043 38.8 3.7 25 218-249 10-34 (268)
416 PRK12727 flagellar biosynthesi 45.4 81 0.0018 37.9 8.7 24 212-235 354-377 (559)
417 PRK13894 conjugal transfer ATP 45.4 58 0.0013 36.6 7.3 41 183-232 132-172 (319)
418 PF13500 AAA_26: AAA domain; P 44.8 33 0.00071 35.3 4.9 25 212-236 5-29 (199)
419 PF01443 Viral_helicase1: Vira 44.8 21 0.00046 37.4 3.6 14 319-332 62-75 (234)
420 KOG2340 Uncharacterized conser 44.8 43 0.00093 39.5 6.0 115 518-634 533-652 (698)
421 PRK04328 hypothetical protein; 44.5 49 0.0011 35.6 6.3 36 210-252 25-60 (249)
422 cd01128 rho_factor Transcripti 44.5 73 0.0016 34.4 7.6 15 319-333 103-117 (249)
423 KOG0349 Putative DEAD-box RNA 44.4 17 0.00038 41.4 2.8 73 186-269 27-121 (725)
424 cd02037 MRP-like MRP (Multiple 43.8 30 0.00065 34.5 4.3 30 213-249 5-34 (169)
425 COG1066 Sms Predicted ATP-depe 43.6 88 0.0019 36.1 8.2 89 211-335 96-184 (456)
426 PTZ00454 26S protease regulato 42.9 37 0.00081 39.3 5.4 43 206-258 177-219 (398)
427 TIGR00614 recQ_fam ATP-depende 42.7 4.1E+02 0.0088 31.4 14.3 96 516-617 35-137 (470)
428 PRK13235 nifH nitrogenase redu 42.6 24 0.00052 38.4 3.6 25 218-249 11-35 (274)
429 PRK10037 cell division protein 42.4 24 0.00053 37.8 3.6 25 218-249 12-36 (250)
430 TIGR02782 TrbB_P P-type conjug 42.1 57 0.0012 36.2 6.5 25 208-232 132-156 (299)
431 COG0542 clpA ATP-binding subun 42.1 53 0.0011 41.1 6.7 101 192-336 179-279 (786)
432 COG1200 RecG RecG-like helicas 42.1 1.6E+02 0.0035 36.1 10.5 91 518-613 294-390 (677)
433 KOG0651 26S proteasome regulat 42.1 32 0.00069 38.1 4.3 47 205-261 163-209 (388)
434 PRK13230 nitrogenase reductase 41.9 26 0.00056 38.3 3.8 25 218-249 11-35 (279)
435 cd01393 recA_like RecA is a b 41.0 1E+02 0.0022 32.2 8.0 42 211-253 22-63 (226)
436 PRK06646 DNA polymerase III su 40.9 2.9E+02 0.0063 27.5 10.6 42 516-558 10-51 (154)
437 PF13481 AAA_25: AAA domain; P 40.8 72 0.0016 32.3 6.7 57 211-267 35-94 (193)
438 cd01983 Fer4_NifH The Fer4_Nif 40.6 52 0.0011 28.5 5.0 22 215-236 6-27 (99)
439 KOG1133 Helicase of the DEAD s 40.4 44 0.00096 40.7 5.5 45 184-234 16-60 (821)
440 KOG4280 Kinesin-like protein [ 40.2 13 0.00028 44.5 1.2 37 186-228 69-106 (574)
441 CHL00072 chlL photochlorophyll 40.2 28 0.00061 38.4 3.7 19 218-236 10-28 (290)
442 PRK09376 rho transcription ter 40.2 25 0.00054 40.5 3.3 27 207-234 169-195 (416)
443 PF03896 TRAP_alpha: Transloco 40.2 21 0.00045 39.3 2.6 12 208-219 190-201 (285)
444 PF09073 BUD22: BUD22; InterP 40.1 22 0.00049 41.6 3.1 6 71-76 279-284 (432)
445 COG4626 Phage terminase-like p 40.1 60 0.0013 38.7 6.5 69 178-253 56-128 (546)
446 TIGR02785 addA_Gpos recombinat 40.0 66 0.0014 43.0 7.7 59 185-259 3-61 (1232)
447 smart00450 RHOD Rhodanese Homo 39.6 68 0.0015 27.9 5.6 46 526-571 46-92 (100)
448 COG0467 RAD55 RecA-superfamily 39.6 64 0.0014 34.8 6.4 38 209-253 24-61 (260)
449 PRK13766 Hef nuclease; Provisi 39.5 4.8E+02 0.01 33.0 15.1 95 516-617 38-141 (773)
450 PRK13185 chlL protochlorophyll 39.4 29 0.00064 37.5 3.7 27 216-249 10-36 (270)
451 PRK12402 replication factor C 39.2 52 0.0011 36.6 5.8 26 209-234 37-62 (337)
452 cd02117 NifH_like This family 39.2 30 0.00066 36.0 3.7 21 216-236 8-28 (212)
453 TIGR01287 nifH nitrogenase iro 39.1 30 0.00065 37.6 3.8 25 218-249 10-34 (275)
454 PRK00090 bioD dithiobiotin syn 38.9 42 0.00091 35.1 4.7 26 212-237 4-29 (222)
455 PLN00020 ribulose bisphosphate 38.5 43 0.00093 38.3 4.8 76 173-265 120-195 (413)
456 cd02032 Bchl_like This family 38.4 31 0.00066 37.3 3.7 19 218-236 10-28 (267)
457 COG2804 PulE Type II secretory 38.2 44 0.00096 39.4 5.0 41 184-233 242-283 (500)
458 PHA02518 ParA-like protein; Pr 38.0 34 0.00073 35.2 3.8 36 218-260 11-48 (211)
459 KOG0743 AAA+-type ATPase [Post 37.7 26 0.00056 40.6 3.0 53 169-235 198-261 (457)
460 KOG0726 26S proteasome regulat 37.4 28 0.00061 38.1 3.0 25 205-229 216-240 (440)
461 PF05127 Helicase_RecD: Helica 37.1 13 0.00027 38.1 0.3 34 213-252 2-35 (177)
462 TIGR01242 26Sp45 26S proteasom 36.9 53 0.0011 37.4 5.4 26 207-232 155-180 (364)
463 KOG1942 DNA helicase, TBP-inte 36.8 50 0.0011 36.2 4.7 26 207-232 63-88 (456)
464 cd01524 RHOD_Pyr_redox Member 36.3 51 0.0011 29.0 4.1 37 535-571 50-86 (90)
465 TIGR01054 rgy reverse gyrase. 35.9 1.7E+02 0.0037 38.9 10.3 72 516-588 102-180 (1171)
466 PF01656 CbiA: CobQ/CobB/MinD/ 35.8 57 0.0012 32.9 5.0 21 216-236 7-27 (195)
467 cd01449 TST_Repeat_2 Thiosulfa 35.3 77 0.0017 29.3 5.4 49 523-571 65-114 (118)
468 KOG0772 Uncharacterized conser 35.2 26 0.00057 40.8 2.5 10 610-619 481-490 (641)
469 PRK13232 nifH nitrogenase redu 34.9 36 0.00078 37.0 3.5 19 218-236 11-29 (273)
470 cd02040 NifH NifH gene encodes 34.8 39 0.00084 36.4 3.8 19 218-236 11-29 (270)
471 KOG0728 26S proteasome regulat 34.6 63 0.0014 34.6 5.0 28 204-231 177-204 (404)
472 KOG1991 Nuclear transport rece 34.5 21 0.00046 44.8 1.7 41 1-41 897-950 (1010)
473 PRK12724 flagellar biosynthesi 34.4 1.4E+02 0.003 34.9 8.2 81 211-326 226-306 (432)
474 PRK13236 nitrogenase reductase 34.3 38 0.00082 37.5 3.6 25 218-249 16-40 (296)
475 PF07726 AAA_3: ATPase family 34.3 29 0.00063 33.5 2.3 22 211-232 2-23 (131)
476 PTZ00361 26 proteosome regulat 34.0 71 0.0015 37.5 5.9 54 203-266 212-265 (438)
477 PHA02608 67 prohead core prote 34.0 25 0.00054 30.4 1.6 35 2-36 46-80 (80)
478 TIGR00365 monothiol glutaredox 34.0 2.8E+02 0.006 25.1 8.6 73 526-601 3-81 (97)
479 cd01520 RHOD_YbbB Member of th 34.0 96 0.0021 29.5 5.9 53 518-570 68-121 (128)
480 cd03028 GRX_PICOT_like Glutare 33.9 2.2E+02 0.0047 25.3 7.8 69 528-600 1-75 (90)
481 PF00437 T2SE: Type II/IV secr 33.9 64 0.0014 34.9 5.3 47 189-249 114-161 (270)
482 PF07015 VirC1: VirC1 protein; 33.9 48 0.001 35.3 4.0 99 218-325 12-111 (231)
483 cd00268 DEADc DEAD-box helicas 33.9 5.1E+02 0.011 26.1 14.6 133 515-661 44-195 (203)
484 COG0626 MetC Cystathionine bet 33.9 1.1E+02 0.0024 35.3 7.3 111 510-650 77-188 (396)
485 PF03344 Daxx: Daxx Family; I 33.8 14 0.0003 45.8 0.0 63 2-64 440-502 (713)
486 KOG0652 26S proteasome regulat 33.7 40 0.00087 36.3 3.4 28 203-230 200-227 (424)
487 PRK12608 transcription termina 33.7 75 0.0016 36.4 5.8 101 207-331 132-232 (380)
488 PRK10436 hypothetical protein; 33.6 59 0.0013 38.5 5.2 41 184-232 202-242 (462)
489 KOG1834 Calsyntenin [Extracell 33.6 25 0.00054 42.0 2.0 42 1-42 884-925 (952)
490 PRK14701 reverse gyrase; Provi 33.6 1.9E+02 0.004 39.9 10.3 78 515-596 102-185 (1638)
491 PF04889 Cwf_Cwc_15: Cwf15/Cwc 33.5 17 0.00037 39.1 0.6 35 2-36 115-149 (244)
492 TIGR00767 rho transcription te 33.4 1.1E+02 0.0024 35.4 7.1 100 207-331 167-267 (415)
493 PF05285 SDA1: SDA1; InterPro 33.3 23 0.00049 39.9 1.6 60 1-60 104-163 (324)
494 PRK09361 radB DNA repair and r 33.1 66 0.0014 33.7 5.1 33 211-250 26-58 (225)
495 cd01394 radB RadB. The archaea 33.1 62 0.0014 33.7 4.9 32 211-249 22-53 (218)
496 TIGR01389 recQ ATP-dependent D 33.1 8.5E+02 0.018 29.7 15.4 139 514-658 35-184 (591)
497 PRK13900 type IV secretion sys 32.9 84 0.0018 35.5 6.1 48 188-249 146-193 (332)
498 PRK10490 sensor protein KdpD; 32.9 1.4E+02 0.003 38.6 8.7 157 211-431 27-186 (895)
499 PF01745 IPT: Isopentenyl tran 32.8 62 0.0013 34.2 4.5 29 211-249 4-32 (233)
500 PF11285 DUF3086: Protein of u 32.7 4.3E+02 0.0093 28.5 10.6 121 180-330 136-257 (283)
No 1
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=9e-93 Score=828.41 Aligned_cols=520 Identities=47% Similarity=0.758 Sum_probs=450.4
Q ss_pred cccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC
Q 043990 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251 (911)
Q Consensus 172 ~~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P 251 (911)
+.++++|.+...|||||+||+.|||+|++|.....+.+|||+||+||+|||+|+|++||++++++|.+.|.+.++|||||
T Consensus 227 v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P 306 (776)
T KOG0390|consen 227 VHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP 306 (776)
T ss_pred ceEEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc
Confidence 78899999999999999999999999999976545789999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhCC-CeEEEEecCCcchhhhccCcc---cCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcC
Q 043990 252 TSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGIDS---FTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDE 327 (911)
Q Consensus 252 ~sLl~qW~~Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~---~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDE 327 (911)
++||.||++||.||.+. ++..+.+++.... .+..... +......+.|.|+||++++.+...+. ...+++|||||
T Consensus 307 ~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il-~~~~glLVcDE 384 (776)
T KOG0390|consen 307 SSLVNNWKKEFGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCRKIL-LIRPGLLVCDE 384 (776)
T ss_pred HHHHHHHHHHHHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHh-cCCCCeEEECC
Confidence 99999999999999985 7888888777664 1111111 11222345799999999998777766 67899999999
Q ss_pred ccccCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhh
Q 043990 328 AHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG 388 (911)
Q Consensus 328 AH~lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 388 (911)
||++||..+++.+ |++.|+|++++|++|+++|+...|++.|..|+..+++..++..+...
T Consensus 385 GHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~- 463 (776)
T KOG0390|consen 385 GHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER- 463 (776)
T ss_pred CCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh-
Confidence 9999999987765 99999999999999999999999999999999999999999888877
Q ss_pred hhHHHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHh
Q 043990 389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLC 468 (911)
Q Consensus 389 ~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~Lrklc 468 (911)
.+++++|..+++.|++||+.+.+.++||++.+++|+|.+++.|+.+|+.++... ....+.+ ..+..+..|+++|
T Consensus 464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~-----~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 464 EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKG-----YALELITKLKKLC 537 (776)
T ss_pred HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhc-----chhhHHHHHHHHh
Confidence 777999999999999999999999999999999999999999999999998775 4433322 2788899999999
Q ss_pred cChhhhH-hhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchH
Q 043990 469 NHPKLIY-DTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQ 547 (911)
Q Consensus 469 nhP~Ll~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~ 547 (911)
+||.|+. ...... ...+........+..+ ..+......|+|+..|..++..+++....++++.++|++
T Consensus 538 nhP~L~~~~~~~~~---e~~~~~~~~~~~~~~~--------~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~ 606 (776)
T KOG0390|consen 538 NHPSLLLLCEKTEK---EKAFKNPALLLDPGKL--------KLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQ 606 (776)
T ss_pred cCHHhhcccccccc---cccccChHhhhccccc--------ccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHH
Confidence 9999985 211111 1111000000000000 011122345999999999998888878899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHH
Q 043990 548 TLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAA 627 (911)
Q Consensus 548 ~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAi 627 (911)
++++++.+|+.+|+.+++|||+|+..+|+++|+.||++.+..+|||+|+||||+||||+||+|||+|||+|||+.+.|||
T Consensus 607 tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAm 686 (776)
T KOG0390|consen 607 TLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAM 686 (776)
T ss_pred HHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhccCCCchhhhhhhcc
Q 043990 628 ARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMH 707 (911)
Q Consensus 628 gR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~~~~~~~t~d~~~ 707 (911)
+||||+||+|+||||||+++|||||+||+||.+|+.|+.+|++...+. ..+++.++++.+|....++.++||+..+
T Consensus 687 aR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~----~~~~~~~~~~~lf~~~~~~~~e~~~~~~ 762 (776)
T KOG0390|consen 687 ARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDV----EKHFFTEDLKTLFDLELDTIVETHKLKK 762 (776)
T ss_pred HHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEeccccc----ccccchHHHHHHHhhhccccccchhhhh
Confidence 999999999999999999999999999999999999999999876554 5678889999999999999999999999
Q ss_pred ccccccCC
Q 043990 708 CTRCQNYD 715 (911)
Q Consensus 708 c~~c~~~~ 715 (911)
|.||...+
T Consensus 763 ~~~~~~~~ 770 (776)
T KOG0390|consen 763 SKDCLLKN 770 (776)
T ss_pred hHHHhhcc
Confidence 99998653
No 2
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.1e-92 Score=803.45 Aligned_cols=477 Identities=37% Similarity=0.641 Sum_probs=417.3
Q ss_pred ccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 173 PITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 173 ~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
.+.||..+...|+|||++||+|||+.+. ...|||||||||||||+|+|+++..+...+ ...+|+|||||+
T Consensus 195 ~~~vPg~I~~~Lf~yQreGV~WL~~L~~------q~~GGILgDeMGLGKTIQiisFLaaL~~S~----k~~~paLIVCP~ 264 (923)
T KOG0387|consen 195 GFKVPGFIWSKLFPYQREGVQWLWELYC------QRAGGILGDEMGLGKTIQIISFLAALHHSG----KLTKPALIVCPA 264 (923)
T ss_pred cccccHHHHHHhhHHHHHHHHHHHHHHh------ccCCCeecccccCccchhHHHHHHHHhhcc----cccCceEEEccH
Confidence 3889999999999999999999999653 356889999999999999999999997764 245899999999
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEecCCcch---hhhccCcc-----cCCCCCCccEEEEehHHHHhhccccccCCCCcEEE
Q 043990 253 SLVSNWEAEIKKWVGGRVQLIALCESTRD---DVVSGIDS-----FTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLI 324 (911)
Q Consensus 253 sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~---~~~~~~~~-----~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVI 324 (911)
+++.||.+|+.+|+|. +++..+++.... +....... .........|+||||+.|+.....+. ...|+++|
T Consensus 265 Tii~qW~~E~~~w~p~-~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~-~~~W~y~I 342 (923)
T KOG0387|consen 265 TIIHQWMKEFQTWWPP-FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLL-GILWDYVI 342 (923)
T ss_pred HHHHHHHHHHHHhCcc-eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccc-cccccEEE
Confidence 9999999999999996 666666654431 10000000 00122345799999999998877665 67899999
Q ss_pred EcCccccCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHH
Q 043990 325 CDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEK 385 (911)
Q Consensus 325 lDEAH~lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 385 (911)
+||+|+|||++++.+. |+|.|||+|++|+.||.||+...|++.|..||..|...+++..+.
T Consensus 343 LDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv 422 (923)
T KOG0387|consen 343 LDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQV 422 (923)
T ss_pred ecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHH
Confidence 9999999999997653 999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHhhHHhhhhcHHHHhc-cCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHH
Q 043990 386 KLGIERSSELSAKVNQFILRRTNALLSN-HLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITAL 464 (911)
Q Consensus 386 ~~~~~~~~eL~~~l~~~ilRRtk~~v~~-~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~L 464 (911)
..+.++...|+.++.||+|||++.++.. .||.|.+.|++|.||+.|+.+|..|+++..+...+.+. ...+..|..|
T Consensus 423 ~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~---~~~l~Gi~iL 499 (923)
T KOG0387|consen 423 QTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGK---RNCLSGIDIL 499 (923)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCC---ccceechHHH
Confidence 9999999999999999999999999998 89999999999999999999999999999988887653 3467889999
Q ss_pred HHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCC-CcccccchHHHHHHHHHHHHhhcCCCeEEEEE
Q 043990 465 KKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGD-GAWVELSGKMHVLARLLGHLRQRTDDRIVLVS 543 (911)
Q Consensus 465 rklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFS 543 (911)
|++||||.|+...-... ..+.+ ...++.||||.+|..+|..+.. .|+|||+||
T Consensus 500 rkICnHPdll~~~~~~~-------------------------~~~~D~~g~~k~sGKm~vl~~ll~~W~k-qg~rvllFs 553 (923)
T KOG0387|consen 500 RKICNHPDLLDRRDEDE-------------------------KQGPDYEGDPKRSGKMKVLAKLLKDWKK-QGDRVLLFS 553 (923)
T ss_pred HhhcCCcccccCccccc-------------------------ccCCCcCCChhhcchHHHHHHHHHHHhh-CCCEEEEeh
Confidence 99999999985421000 00001 1346679999999999999997 689999999
Q ss_pred cchHHHHHHHHHHH-HcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcch
Q 043990 544 NYTQTLDLFAQLCR-ERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAN 622 (911)
Q Consensus 544 q~~~~ld~L~~~L~-~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~ 622 (911)
|..+||++|+.+|. ..||.|+++||+|+...|+++|++||+ +...+|||++|++||.||||++||+||+|||+|||..
T Consensus 554 qs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPSt 632 (923)
T KOG0387|consen 554 QSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPST 632 (923)
T ss_pred hHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCCCcc
Confidence 99999999999999 689999999999999999999999998 4567899999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhccCC
Q 043990 623 DKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHD 696 (911)
Q Consensus 623 ~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~~ 696 (911)
+.||..|+||+||+|.|.||||++.|||||+||.+|..|+.|.+.++.+ ..+.++|...+|.+||++..
T Consensus 633 D~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~-----p~q~RfF~~~dl~dLFsl~~ 701 (923)
T KOG0387|consen 633 DNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKN-----PEQRRFFKGNDLHDLFSLKD 701 (923)
T ss_pred chHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcC-----HHHhhhcccccHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999988764 34468999999999999987
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=5.6e-88 Score=760.75 Aligned_cols=466 Identities=33% Similarity=0.543 Sum_probs=391.8
Q ss_pred Chhhh-ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043990 177 DPLLV-RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV 255 (911)
Q Consensus 177 ~p~l~-~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl 255 (911)
|..+. ..|||||.+|++||...+ ..+. +||||||||||||+|+|+++.++.... + ..+|.||+||.|.+
T Consensus 160 P~~v~~g~lr~YQveGlnWLi~l~-----engi-ngILaDEMGLGKTlQtIs~l~yl~~~~--~--~~GPfLVi~P~StL 229 (971)
T KOG0385|consen 160 PSYVKGGELRDYQLEGLNWLISLY-----ENGI-NGILADEMGLGKTLQTISLLGYLKGRK--G--IPGPFLVIAPKSTL 229 (971)
T ss_pred chhhcCCccchhhhccHHHHHHHH-----hcCc-ccEeehhcccchHHHHHHHHHHHHHhc--C--CCCCeEEEeeHhhH
Confidence 44555 799999999999998754 2344 579999999999999999999887632 1 34689999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCcc--hhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCC
Q 043990 256 SNWEAEIKKWVGGRVQLIALCESTR--DDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 256 ~qW~~Ei~k~~~~~~~v~~~~~~~r--~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN 333 (911)
.||.+||++|+|. +.++.++|... ......+ . ..+.++|+||||++..+....+ ....|.++||||||||||
T Consensus 230 ~NW~~Ef~rf~P~-l~~~~~~Gdk~eR~~~~r~~---~-~~~~fdV~iTsYEi~i~dk~~l-k~~~W~ylvIDEaHRiKN 303 (971)
T KOG0385|consen 230 DNWMNEFKRFTPS-LNVVVYHGDKEERAALRRDI---M-LPGRFDVCITSYEIAIKDKSFL-KKFNWRYLVIDEAHRIKN 303 (971)
T ss_pred HHHHHHHHHhCCC-cceEEEeCCHHHHHHHHHHh---h-ccCCCceEeehHHHHHhhHHHH-hcCCceEEEechhhhhcc
Confidence 9999999999996 66666666543 2222222 1 2347899999999998775544 478999999999999999
Q ss_pred ccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHH
Q 043990 334 DQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE 394 (911)
Q Consensus 334 ~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~e 394 (911)
.+++.++ |+|.|||+|++|+.|.+|++...|..+|......+ ..+...+
T Consensus 304 ~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~------------~~e~v~~ 371 (971)
T KOG0385|consen 304 EKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEG------------DQELVSR 371 (971)
T ss_pred hhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccccc------------CHHHHHH
Confidence 9987654 99999999999999999999999999998653222 2235578
Q ss_pred HHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhh
Q 043990 395 LSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLI 474 (911)
Q Consensus 395 L~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll 474 (911)
|+.+++||+|||+|.+|.+.||||.+.+++|.|+..|++.|+.++.................+++.++.|||+||||+|+
T Consensus 372 Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF 451 (971)
T KOG0385|consen 372 LHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLF 451 (971)
T ss_pred HHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999998765332222222224567889999999999999998
Q ss_pred HhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHH
Q 043990 475 YDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQ 554 (911)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~ 554 (911)
.. +..+.+ ...+..++..||||.+|++||..+++ .|+|||||||++.+||+|++
T Consensus 452 ~g-~ePg~p------------------------yttdehLv~nSGKm~vLDkLL~~Lk~-~GhRVLIFSQmt~mLDILeD 505 (971)
T KOG0385|consen 452 DG-AEPGPP------------------------YTTDEHLVTNSGKMLVLDKLLPKLKE-QGHRVLIFSQMTRMLDILED 505 (971)
T ss_pred CC-CCCCCC------------------------CCcchHHHhcCcceehHHHHHHHHHh-CCCeEEEeHHHHHHHHHHHH
Confidence 65 322221 12345667789999999999999998 79999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcC
Q 043990 555 LCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634 (911)
Q Consensus 555 ~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiG 634 (911)
+|..+||.|+||||+|+.++|...|+.||.+.+..||||+||+|||.||||++|++||+||.+|||..+.||++||||||
T Consensus 506 yc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIG 585 (971)
T KOG0385|consen 506 YCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIG 585 (971)
T ss_pred HHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhC
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhccCCC
Q 043990 635 QKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDD 697 (911)
Q Consensus 635 Qkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~~~ 697 (911)
|+|+|.||||++.+||||+|+.|...|..|...|++++... .......+.+++..|..++.+
T Consensus 586 Q~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~l~-~~~~~~~~k~~~l~~~r~g~~ 647 (971)
T KOG0385|consen 586 QKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGRLE-EQKSNGLGKDELLNLLRFGAD 647 (971)
T ss_pred CcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCchh-hhhccccchHHHHHHHHcCch
Confidence 99999999999999999999999999999999988866222 112234678888888877644
No 4
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=3.6e-84 Score=755.77 Aligned_cols=490 Identities=31% Similarity=0.528 Sum_probs=410.0
Q ss_pred CCCcccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC--CCCCCCCceE
Q 043990 169 GNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG--FDGKPMVKKA 246 (911)
Q Consensus 169 ~~~~~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g--~~~~p~~~~~ 246 (911)
....++.+|..|...||.||.+||+|+. +++..+.+| ||||+||||||+|+|++++.-.... ....-...|.
T Consensus 961 ski~~y~Ip~pI~a~LRkYQqEGVnWLa-----FLnky~LHG-ILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PS 1034 (1549)
T KOG0392|consen 961 SKIPEYKIPVPISAKLRKYQQEGVNWLA-----FLNKYKLHG-ILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPS 1034 (1549)
T ss_pred ccCCccccccchhHHHHHHHHhccHHHH-----HHHHhcccc-eeeccccccHHHHHHHHHHHHHHhhcccchhhccCCe
Confidence 3455688899999999999999999995 677788888 9999999999999999997643322 2222234579
Q ss_pred EEEeCchhhHHHHHHHHHHhCCCeEEEEecCCc--chhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEE
Q 043990 247 IIVTPTSLVSNWEAEIKKWVGGRVQLIALCEST--RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLI 324 (911)
Q Consensus 247 LIV~P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~--r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVI 324 (911)
|||||++|+.+|+.|+.+|+|. +++..|.|.. |...+.+ ..+.+|+|+||+.+|++...+. ...|.++|
T Consensus 1035 LIVCPsTLtGHW~~E~~kf~pf-L~v~~yvg~p~~r~~lR~q-------~~~~~iiVtSYDv~RnD~d~l~-~~~wNYcV 1105 (1549)
T KOG0392|consen 1035 LIVCPSTLTGHWKSEVKKFFPF-LKVLQYVGPPAERRELRDQ-------YKNANIIVTSYDVVRNDVDYLI-KIDWNYCV 1105 (1549)
T ss_pred EEECCchhhhHHHHHHHHhcch-hhhhhhcCChHHHHHHHhh-------ccccceEEeeHHHHHHHHHHHH-hcccceEE
Confidence 9999999999999999999996 6776666443 3333222 2456899999999999998887 57899999
Q ss_pred EcCccccCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHH
Q 043990 325 CDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEK 385 (911)
Q Consensus 325 lDEAH~lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 385 (911)
+||+|-|||.+++.++ |++.|||+|++||+||++|+.+.|..+|..||..++++.++..++
T Consensus 1106 LDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~ 1185 (1549)
T KOG0392|consen 1106 LDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQ 1185 (1549)
T ss_pred ecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHH
Confidence 9999999999987765 999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHH--HHHh-----hhhhhHhhHH
Q 043990 386 KLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNV--KRAI-----SEETKQSKIL 458 (911)
Q Consensus 386 ~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~--~~~~-----~~~~~~~~~l 458 (911)
+.|..+++.||+.+-||++||+|.+|.++||||+.+.++|+|+|.|+++|+.|..+.+. .... +......+++
T Consensus 1186 EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvF 1265 (1549)
T KOG0392|consen 1186 EAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVF 1265 (1549)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999766211 1111 1111256899
Q ss_pred HHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhc----
Q 043990 459 AYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQR---- 534 (911)
Q Consensus 459 ~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~---- 534 (911)
+++..||++||||.|+..... + .+......+.. ....-.-+..|+|+.+|..||.++.-.
T Consensus 1266 qaLqYlrKLcnHpaLvlt~~h---p---~la~i~~~l~~----------~~~~LHdi~hspKl~AL~qLL~eCGig~~~~ 1329 (1549)
T KOG0392|consen 1266 QALQYLRKLCNHPALVLTPVH---P---DLAAIVSHLAH----------FNSSLHDIQHSPKLSALKQLLSECGIGNNSD 1329 (1549)
T ss_pred HHHHHHHHhcCCcceeeCCCc---c---hHHHHHHHHHH----------hhhhHHHhhhchhHHHHHHHHHHhCCCCCCc
Confidence 999999999999999865311 0 00000000000 000112256799999999999887532
Q ss_pred ---------CCCeEEEEEcchHHHHHHHHHHHHc---CCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccc
Q 043990 535 ---------TDDRIVLVSNYTQTLDLFAQLCRER---RYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCG 602 (911)
Q Consensus 535 ---------~~~KVIIFSq~~~~ld~L~~~L~~~---gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~G 602 (911)
.++|++||||++.|+|++++-|-+. .+.|.||||+++..+|+++|++||++ +.+-|+|++|.+||.|
T Consensus 1330 ~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~D-ptIDvLlLTThVGGLG 1408 (1549)
T KOG0392|consen 1330 SEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNED-PTIDVLLLTTHVGGLG 1408 (1549)
T ss_pred ccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCC-CceeEEEEeeeccccc
Confidence 4689999999999999999887665 56688999999999999999999984 3455899999999999
Q ss_pred cCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCC
Q 043990 603 LNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNF 682 (911)
Q Consensus 603 LNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~ 682 (911)
||||||++|||++.+|||.++.|||+||||+||||.|.|||||++||+||||+.+|..|...++.|++.++.+ ...
T Consensus 1409 LNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNas----l~t 1484 (1549)
T KOG0392|consen 1409 LNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNAS----LET 1484 (1549)
T ss_pred cccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccccc----ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877655 467
Q ss_pred CCHHHHHHhhcc
Q 043990 683 LSTEDLRDLFTF 694 (911)
Q Consensus 683 ~s~~eL~~Lf~~ 694 (911)
+.+++|.+||+.
T Consensus 1485 M~TdqLLdlF~~ 1496 (1549)
T KOG0392|consen 1485 MDTDQLLDLFTV 1496 (1549)
T ss_pred cCHHHHHHHhcc
Confidence 899999999984
No 5
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.2e-80 Score=758.71 Aligned_cols=466 Identities=30% Similarity=0.494 Sum_probs=386.5
Q ss_pred ccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh
Q 043990 175 TVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL 254 (911)
Q Consensus 175 ~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL 254 (911)
..|..+...|||||.+||+||+.++ ....|||||||||||||+|+|+++..+.... ...+|+|||||.++
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~------~~g~gGILADEMGLGKTlQaIalL~~L~~~~----~~~gp~LIVvP~Sl 230 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLY------ENGINGILADEMGLGKTLQTISLLGYLHEYR----GITGPHMVVAPKST 230 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHH------hcCCCEEEEeCCCccHHHHHHHHHHHHHHhc----CCCCCEEEEeChHH
Confidence 4577888899999999999998754 2346789999999999999999998876532 13568999999999
Q ss_pred hHHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCc
Q 043990 255 VSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 255 l~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~ 334 (911)
+.||.+||.+|+|. +.++.+++......... ... .....++|+||||+++......+. ...|++|||||||+|||.
T Consensus 231 L~nW~~Ei~kw~p~-l~v~~~~G~~~eR~~~~-~~~-~~~~~~dVvITSYe~l~~e~~~L~-k~~W~~VIvDEAHrIKN~ 306 (1033)
T PLN03142 231 LGNWMNEIRRFCPV-LRAVKFHGNPEERAHQR-EEL-LVAGKFDVCVTSFEMAIKEKTALK-RFSWRYIIIDEAHRIKNE 306 (1033)
T ss_pred HHHHHHHHHHHCCC-CceEEEeCCHHHHHHHH-HHH-hcccCCCcceecHHHHHHHHHHhc-cCCCCEEEEcCccccCCH
Confidence 99999999999985 56666665543221110 000 112468899999999987766665 578999999999999999
Q ss_pred cchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHH
Q 043990 335 QTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSEL 395 (911)
Q Consensus 335 ~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL 395 (911)
.++.++ |++.|||+|++|+.|+.|++...|..+|..+.. ........+|
T Consensus 307 ~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~------------~~~~e~i~~L 374 (1033)
T PLN03142 307 NSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE------------NDQQEVVQQL 374 (1033)
T ss_pred HHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc------------cchHHHHHHH
Confidence 886654 999999999999999999999999999976311 1123446789
Q ss_pred HHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhH
Q 043990 396 SAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIY 475 (911)
Q Consensus 396 ~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~ 475 (911)
+.++.||++||++.++...||++.+.+++|.||+.|+.+|+.++..... .+........++..++.||++|+||.|+.
T Consensus 375 ~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~--~l~~g~~~~~LlnilmqLRk~cnHP~L~~ 452 (1033)
T PLN03142 375 HKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLD--VVNAGGERKRLLNIAMQLRKCCNHPYLFQ 452 (1033)
T ss_pred HHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHhCCHHhhh
Confidence 9999999999999999999999999999999999999999998764322 12222334567889999999999999875
Q ss_pred hhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHH
Q 043990 476 DTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL 555 (911)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~ 555 (911)
..... .+ + .....++..|+|+.+|.++|..+.. .++||||||+|+.++++|+.+
T Consensus 453 ~~ep~-~~---------------~---------~~~e~lie~SgKl~lLdkLL~~Lk~-~g~KVLIFSQft~~LdiLed~ 506 (1033)
T PLN03142 453 GAEPG-PP---------------Y---------TTGEHLVENSGKMVLLDKLLPKLKE-RDSRVLIFSQMTRLLDILEDY 506 (1033)
T ss_pred ccccc-Cc---------------c---------cchhHHhhhhhHHHHHHHHHHHHHh-cCCeEEeehhHHHHHHHHHHH
Confidence 32110 00 0 0112345679999999999999987 689999999999999999999
Q ss_pred HHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCC
Q 043990 556 CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQ 635 (911)
Q Consensus 556 L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQ 635 (911)
|..+|++|++|+|+++..+|+++|++||.+++..++||+||+|||+||||+.|++||+||+||||+.+.||+||+||+||
T Consensus 507 L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQ 586 (1033)
T PLN03142 507 LMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQ 586 (1033)
T ss_pred HHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999998777788999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhccCCC
Q 043990 636 KKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDD 697 (911)
Q Consensus 636 kk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~~~ 697 (911)
+++|+||||++.|||||+|++++..|..|...|++.+... ....++.++|.+||.+..+
T Consensus 587 kk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~---~~~~~~~~eL~~ll~~ga~ 645 (1033)
T PLN03142 587 KKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLA---EQKTVNKDELLQMVRYGAE 645 (1033)
T ss_pred CceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCccc---ccccCCHHHHHHHHHhChH
Confidence 9999999999999999999999999999999888754322 1256899999999987543
No 6
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=5.5e-82 Score=742.05 Aligned_cols=468 Identities=31% Similarity=0.530 Sum_probs=390.9
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAE 261 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~E 261 (911)
..||+||.+||+||+.++ .+...||||||||||||+|+|+++.++...+. ..+|.|||+|.|.+.+|++|
T Consensus 369 ~~LRdyQLeGlNWl~~~W------~~~~n~ILADEmgLgktvqti~fl~~l~~~~~----~~gpflvvvplst~~~W~~e 438 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSW------YKRNNCILADEMGLGKTVQTITFLSYLFHSLQ----IHGPFLVVVPLSTITAWERE 438 (1373)
T ss_pred chhhhhhcccchhHHHHH------HhcccceehhhcCCCcchHHHHHHHHHHHhhh----ccCCeEEEeehhhhHHHHHH
Confidence 589999999999998765 45678999999999999999999999887652 35689999999999999999
Q ss_pred HHHHhCCCeEEEEecCCcch-hhhccCcccCCC---CCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccch
Q 043990 262 IKKWVGGRVQLIALCESTRD-DVVSGIDSFTDP---CSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~-~~~~~~~~~~~~---~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
|..|+. +.+++|.|.... ..+.....+... .-+++++||||+++..+...+. ...|.++++||||||||..++
T Consensus 439 f~~w~~--mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~-~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 439 FETWTD--MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELS-KIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HHHHhh--hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhc-cCCcceeeecHHhhcCchHHH
Confidence 999993 666777665432 222222222221 1258999999999987776665 678999999999999999886
Q ss_pred hcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHH
Q 043990 338 TNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAK 398 (911)
Q Consensus 338 ~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~ 398 (911)
.+. |++.|||+|++|++|+.|.+..+|...|.. .....+..|+.+
T Consensus 516 l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~----------------~~e~~~~~L~~~ 579 (1373)
T KOG0384|consen 516 LYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE----------------ETEEQVRKLQQI 579 (1373)
T ss_pred HHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc----------------hhHHHHHHHHHH
Confidence 553 999999999999999999999999887732 123445789999
Q ss_pred hhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhh
Q 043990 399 VNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTI 478 (911)
Q Consensus 399 l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~ 478 (911)
+.||||||.+++|.+.||+|.+.++.|+||..|+++|+.++....-...-........+++.++.||++||||+|+...-
T Consensus 580 L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gae 659 (1373)
T KOG0384|consen 580 LKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAE 659 (1373)
T ss_pred hhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHH
Confidence 99999999999999999999999999999999999999988654322222222334689999999999999999986432
Q ss_pred hcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH
Q 043990 479 KSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE 558 (911)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~ 558 (911)
..-.. .+.++. . ...-..++..||||-+|++||..++. .|+|||||||.+.|||+|+.+|..
T Consensus 660 e~~~~---~~~~~~---~-----------d~~L~~lI~sSGKlVLLDKLL~rLk~-~GHrVLIFSQMVRmLDIL~eYL~~ 721 (1373)
T KOG0384|consen 660 EKILG---DFRDKM---R-----------DEALQALIQSSGKLVLLDKLLPRLKE-GGHRVLIFSQMVRMLDILAEYLSL 721 (1373)
T ss_pred HHHHH---hhhhcc---h-----------HHHHHHHHHhcCcEEeHHHHHHHHhc-CCceEEEhHHHHHHHHHHHHHHHH
Confidence 21100 000000 0 00012346779999999999999997 799999999999999999999999
Q ss_pred cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCccc
Q 043990 559 RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638 (911)
Q Consensus 559 ~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~ 638 (911)
+||+|-||||+++.+-|+++|++||.++++.|||||||.|||.||||+.|++||+||.+|||.++.||++|||||||++.
T Consensus 722 r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~ 801 (1373)
T KOG0384|consen 722 RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKH 801 (1373)
T ss_pred cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccc-cccccCCCCCHHHHHHhhccCC
Q 043990 639 VFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTD-SSATQGNFLSTEDLRDLFTFHD 696 (911)
Q Consensus 639 V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~-~~~~~~~~~s~~eL~~Lf~~~~ 696 (911)
|.|||||+++|+||.|++|...|..|..+|++.... +.......|+.+||.+|+.|+.
T Consensus 802 VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA 860 (1373)
T KOG0384|consen 802 VNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGA 860 (1373)
T ss_pred EEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhch
Confidence 999999999999999999999999999888775442 3344568899999999988764
No 7
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.9e-80 Score=713.20 Aligned_cols=499 Identities=31% Similarity=0.538 Sum_probs=409.7
Q ss_pred CcccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 171 ~~~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
.+.++||..|...||.||+.|+.||...+. .+. +||||||||||||+|+|++++++.+... .++|.|||+
T Consensus 603 qVktpvPsLLrGqLReYQkiGLdWLatLYe-----knl-NGILADEmGLGKTIQtISllAhLACeeg----nWGPHLIVV 672 (1958)
T KOG0391|consen 603 QVKTPVPSLLRGQLREYQKIGLDWLATLYE-----KNL-NGILADEMGLGKTIQTISLLAHLACEEG----NWGPHLIVV 672 (1958)
T ss_pred eeccCchHHHHHHHHHHHHhhHHHHHHHHH-----hcc-cceehhhhcccchhHHHHHHHHHHhccc----CCCCceEEe
Confidence 356889999999999999999999998653 334 4499999999999999999999988642 578899999
Q ss_pred CchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccc
Q 043990 251 PTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHR 330 (911)
Q Consensus 251 P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~ 330 (911)
|++++-||+-||++|+|+ ++++.|+|..++...+. ..|..+ +.++|.||||..+..+...|. ...|.++|+||||+
T Consensus 673 pTsviLnWEMElKRwcPg-lKILTYyGs~kErkeKR-qgW~kP-naFHVCItSYklv~qd~~AFk-rkrWqyLvLDEaqn 748 (1958)
T KOG0391|consen 673 PTSVILNWEMELKRWCPG-LKILTYYGSHKERKEKR-QGWAKP-NAFHVCITSYKLVFQDLTAFK-RKRWQYLVLDEAQN 748 (1958)
T ss_pred echhhhhhhHHHhhhCCc-ceEeeecCCHHHHHHHh-hcccCC-CeeEEeehhhHHHHhHHHHHH-hhccceeehhhhhh
Confidence 999999999999999996 89999999877655443 234433 568999999999988888887 67899999999999
Q ss_pred cCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhH
Q 043990 331 LKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIER 391 (911)
Q Consensus 331 lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~ 391 (911)
|||..++.++ |++.|||+|++||+|..|.+...|+.||.+|+..-... ....+...
T Consensus 749 IKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEg-----sqeyn~kl 823 (1958)
T KOG0391|consen 749 IKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEG-----SQEYNHKL 823 (1958)
T ss_pred hcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhccc-----chhhchHH
Confidence 9999998775 99999999999999999999999999999997543332 33444566
Q ss_pred HHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcCh
Q 043990 392 SSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHP 471 (911)
Q Consensus 392 ~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP 471 (911)
..+|+++++||+|||+|.+|.+.||.|++++|+|.||..|+.+|+.|+.....+..+.. .+-..++++++.||++||||
T Consensus 824 V~RLHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkS-GhfmsVlnilmqLrKvCNHP 902 (1958)
T KOG0391|consen 824 VIRLHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKS-GHFMSVLNILMQLRKVCNHP 902 (1958)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhc-CchhHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999999999999999999999999887766665532 34457899999999999999
Q ss_pred hhhHhh-------------------------hhcCCC----------------------------------CCC------
Q 043990 472 KLIYDT-------------------------IKSGNP----------------------------------GTT------ 486 (911)
Q Consensus 472 ~Ll~~~-------------------------~~~~~~----------------------------------~~~------ 486 (911)
.|+... +....+ ...
T Consensus 903 nLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp 982 (1958)
T KOG0391|consen 903 NLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPP 982 (1958)
T ss_pred CcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCC
Confidence 985200 000000 000
Q ss_pred -----C--c-------------c---------------------------------------------------hhhh--
Q 043990 487 -----G--F-------------E---------------------------------------------------DCIR-- 493 (911)
Q Consensus 487 -----~--~-------------~---------------------------------------------------~~~~-- 493 (911)
+ | + .|..
T Consensus 983 ~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~ 1062 (1958)
T KOG0391|consen 983 IPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQI 1062 (1958)
T ss_pred CccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeee
Confidence 0 0 0 0000
Q ss_pred ------------------------------------cCCcc----------cccCC------------------------
Q 043990 494 ------------------------------------FFPPE----------MFSGR------------------------ 503 (911)
Q Consensus 494 ------------------------------------~~~~e----------~~~~~------------------------ 503 (911)
.++.. .+.+.
T Consensus 1063 ~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri 1142 (1958)
T KOG0391|consen 1063 VSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRI 1142 (1958)
T ss_pred ccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHH
Confidence 00000 00000
Q ss_pred ----------------------------------------------------------------------CCCCCCC---
Q 043990 504 ----------------------------------------------------------------------SGSWTGG--- 510 (911)
Q Consensus 504 ----------------------------------------------------------------------~~~~~~~--- 510 (911)
...+...
T Consensus 1143 ~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r 1222 (1958)
T KOG0391|consen 1143 YLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMR 1222 (1958)
T ss_pred hhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHH
Confidence 0000000
Q ss_pred ----------------------------CCcc-cccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCC
Q 043990 511 ----------------------------DGAW-VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRY 561 (911)
Q Consensus 511 ----------------------------~~~~-~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi 561 (911)
+..+ .-.+||++.|.-||..++. .|+|||||+|++.|||+|+.+|..+||
T Consensus 1223 ~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~-eghRvLIfTQMtkmLDVLeqFLnyHgy 1301 (1958)
T KOG0391|consen 1223 ILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKS-EGHRVLIFTQMTKMLDVLEQFLNYHGY 1301 (1958)
T ss_pred HHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHh-cCceEEehhHHHHHHHHHHHHHhhcce
Confidence 0000 1147999999999999987 799999999999999999999999999
Q ss_pred CEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEE
Q 043990 562 PYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 562 ~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~V 641 (911)
-|+||||+++.++|+.++++||. +..+|+||+||..||+||||++|++|||||.+|||+.+.||-+|+|||||+|+|+|
T Consensus 1302 lY~RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHI 1380 (1958)
T KOG0391|consen 1302 LYVRLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 1380 (1958)
T ss_pred EEEEecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEE
Confidence 99999999999999999999998 67899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhccC
Q 043990 642 YRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFH 695 (911)
Q Consensus 642 yrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~ 695 (911)
||||...||||+|+.+...|+.|-+++.++++-. -.+|+..++++||...
T Consensus 1381 YRLISe~TIEeniLkkanqKr~L~evaiqggdfT----t~ff~q~ti~dLFd~~ 1430 (1958)
T KOG0391|consen 1381 YRLISERTIEENILKKANQKRMLDEVAIQGGDFT----TAFFKQRTIRDLFDVY 1430 (1958)
T ss_pred EEeeccchHHHHHHhhhhHHHHHHHHhhccCCcc----HHHHhhhhHHHHhcCC
Confidence 9999999999999999999999999988876544 3578899999999884
No 8
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=4.5e-78 Score=683.37 Aligned_cols=463 Identities=31% Similarity=0.501 Sum_probs=372.2
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
+|.|||.-||+|+. ++...+..| |||||||||||+|+||++..|...|. .+|.|||||+|.+.||.+||
T Consensus 399 ~LkdYQlvGvNWL~-----Llyk~~l~g-ILADEMGLGKTiQvIaFlayLkq~g~-----~gpHLVVvPsSTleNWlrEf 467 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLL-----LLYKKKLNG-ILADEMGLGKTIQVIAFLAYLKQIGN-----PGPHLVVVPSSTLENWLREF 467 (941)
T ss_pred cccchhhhhHHHHH-----HHHHccccc-eehhhccCcchhHHHHHHHHHHHcCC-----CCCcEEEecchhHHHHHHHH
Confidence 59999999999997 344556666 99999999999999999999998883 56899999999999999999
Q ss_pred HHHhCCCeEEEEecCCcch--hhhccCcccCCCCCCccEEEEehHHHHh--hccccccCCCCcEEEEcCccccCCccchh
Q 043990 263 KKWVGGRVQLIALCESTRD--DVVSGIDSFTDPCSSLQVLIVSYETFRM--HSSKFSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 263 ~k~~~~~~~v~~~~~~~r~--~~~~~~~~~~~~~~~~~VvI~Sye~l~~--~~~~~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
.+|+|. ++|..|+|+... .++..+. .....|+|++|||..+.. +...|.+..+|+++|.||||.|||..+.+
T Consensus 468 ~kwCPs-l~Ve~YyGSq~ER~~lR~~i~---~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR 543 (941)
T KOG0389|consen 468 AKWCPS-LKVEPYYGSQDERRELRERIK---KNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER 543 (941)
T ss_pred HHhCCc-eEEEeccCcHHHHHHHHHHHh---ccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHH
Confidence 999996 888888887632 2332222 223478999999998843 33456667899999999999999999988
Q ss_pred cc-------------------CCHHHHHHhhhhcCCCCCCCH-HHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHH
Q 043990 339 NR-------------------NDLEEFFAMVNFTNPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAK 398 (911)
Q Consensus 339 ~~-------------------N~l~El~sLl~fl~P~~l~~~-~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~ 398 (911)
++ |+|.||++|+.|+.|.+|.+. ..+...|...- ..+...+...+..+++.+...+
T Consensus 544 y~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~----~~d~d~e~~~l~qerIsrAK~i 619 (941)
T KOG0389|consen 544 YKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKK----TSDGDIENALLSQERISRAKTI 619 (941)
T ss_pred HHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccC----CccchhhHHHHHHHHHHHHHHh
Confidence 76 999999999999999998754 45665554321 2244555666777889999999
Q ss_pred hhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhh
Q 043990 399 VNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTI 478 (911)
Q Consensus 399 l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~ 478 (911)
++||+|||.|.+|.+.||||+.++.+|.|+..|+.+|..++.................--..++.||+++|||.|+....
T Consensus 620 m~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y 699 (941)
T KOG0389|consen 620 MKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIY 699 (941)
T ss_pred hhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhc
Confidence 99999999999999999999999999999999999999987654222111111100111457899999999999976433
Q ss_pred hcCC--------CCCCCc---------ch-----------hhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHH
Q 043990 479 KSGN--------PGTTGF---------ED-----------CIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGH 530 (911)
Q Consensus 479 ~~~~--------~~~~~~---------~~-----------~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~ 530 (911)
.... -....+ ++ ....++ ....+.- ....+-.|||..+|..||..
T Consensus 700 ~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~------~~~~f~L-~d~~~mdSgK~r~L~~LLp~ 772 (941)
T KOG0389|consen 700 TDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFR------HLSKFQL-KDDLWMDSGKCRKLKELLPK 772 (941)
T ss_pred cHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcC------CCccccc-CCchhhhhhhHhHHHHHHHH
Confidence 2110 000000 00 000011 0001111 12233459999999999999
Q ss_pred HhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCE
Q 043990 531 LRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNR 610 (911)
Q Consensus 531 l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~ 610 (911)
++. .|+|||||||||+|||+|+.+|..+++.|+||||+|.+..||.+|+.|+. +.++||||+||+|||.||||++||+
T Consensus 773 ~k~-~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINLt~An~ 850 (941)
T KOG0389|consen 773 IKK-KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINLTCANT 850 (941)
T ss_pred Hhh-cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecccccce
Confidence 997 68999999999999999999999999999999999999999999999998 5689999999999999999999999
Q ss_pred EEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhccc
Q 043990 611 LVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQT 673 (911)
Q Consensus 611 VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~ 673 (911)
||++|.++||-.+.||.+||||+||+|+|+|||||+++||||.|++....|..|-..+.++..
T Consensus 851 VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 851 VIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred EEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 999999999999999999999999999999999999999999999999999999888766543
No 9
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=3.3e-77 Score=678.67 Aligned_cols=514 Identities=32% Similarity=0.537 Sum_probs=413.0
Q ss_pred cccccChhhhccChHHHHHHHHHHHHhhhcccc---ccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEE
Q 043990 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLN---AAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAII 248 (911)
Q Consensus 172 ~~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~---~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LI 248 (911)
.+|.||..|...|.|||..||+|||+|....+. ...+.|||||+-||||||+|.|+++++++.... -..+++||
T Consensus 657 ~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~k---lg~ktaLv 733 (1567)
T KOG1015|consen 657 PLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDK---LGFKTALV 733 (1567)
T ss_pred chhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhc---cCCceEEE
Confidence 568899999999999999999999998754332 345679999999999999999999999876542 34689999
Q ss_pred EeCchhhHHHHHHHHHHhCC-----CeEEEEecCCcc-hhhhccCcccCCCCCCccEEEEehHHHHhhccc---------
Q 043990 249 VTPTSLVSNWEAEIKKWVGG-----RVQLIALCESTR-DDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--------- 313 (911)
Q Consensus 249 V~P~sLl~qW~~Ei~k~~~~-----~~~v~~~~~~~r-~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--------- 313 (911)
|||.+++.||.+||.+|.++ .+.|..+..-.+ ......+..|. ....|+|+.|+++|.....
T Consensus 734 V~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~---~~ggVmIiGYdmyRnLa~gr~vk~rk~k 810 (1567)
T KOG1015|consen 734 VCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQ---EDGGVMIIGYDMYRNLAQGRNVKSRKLK 810 (1567)
T ss_pred EcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHH---hcCCEEEEehHHHHHHhcccchhhhHHH
Confidence 99999999999999999985 344544443333 22222233332 3347999999999754321
Q ss_pred -----cccCCCCcEEEEcCccccCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHh
Q 043990 314 -----FSCSESCDLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYE 369 (911)
Q Consensus 314 -----~~~~~~~~lVIlDEAH~lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~ 369 (911)
......+|+|||||||.|||..+..++ |+|.|||.|++|+.|++||+..+|+++|.
T Consensus 811 e~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFv 890 (1567)
T KOG1015|consen 811 EIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFV 890 (1567)
T ss_pred HHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhc
Confidence 112467899999999999999886554 99999999999999999999999999999
Q ss_pred hhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHH---
Q 043990 370 TSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKR--- 446 (911)
Q Consensus 370 ~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~--- 446 (911)
+||..|+..+++..+......|..-|+.++..|+-|+....+.++||||+++++.+.||+.|..||..|+... ...
T Consensus 891 NpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~-~~~G~d 969 (1567)
T KOG1015|consen 891 NPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHL-TGVGND 969 (1567)
T ss_pred CccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhc-cccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998721 111
Q ss_pred HhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCC-------CCCCcc-hhh-------------hcCC-------cc
Q 043990 447 AISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNP-------GTTGFE-DCI-------------RFFP-------PE 498 (911)
Q Consensus 447 ~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~-------~~~~~~-~~~-------------~~~~-------~e 498 (911)
...+...+..+++.+..|+++.+||+.+......... ....|. ++. ..+. .+
T Consensus 970 ~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~De 1049 (1567)
T KOG1015|consen 970 SEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDE 1049 (1567)
T ss_pred cccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccc
Confidence 1111235668899999999999999875321110000 000000 000 0000 00
Q ss_pred cc-----cC------------------------------------CCCCC---------------CCCCCcccccchHHH
Q 043990 499 MF-----SG------------------------------------RSGSW---------------TGGDGAWVELSGKMH 522 (911)
Q Consensus 499 ~~-----~~------------------------------------~~~~~---------------~~~~~~~~~~S~Kl~ 522 (911)
-. ++ ..+.+ ...+.....+|+||-
T Consensus 1050 sss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmi 1129 (1567)
T KOG1015|consen 1050 SSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMI 1129 (1567)
T ss_pred cccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCccee
Confidence 00 00 00000 001112246899999
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH----------------------cCCCEEEEeCCCCHHHHHHHHH
Q 043990 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE----------------------RRYPYLRLDGTTSISKRQKLVN 580 (911)
Q Consensus 523 ~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~----------------------~gi~~~~LdGsts~~~R~~iv~ 580 (911)
+|.+||..... -|+|+|||||...+|++|+.+|.. .|..|.+|||++...+|+++++
T Consensus 1130 LLleIL~mcee-IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1130 LLLEILRMCEE-IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred hHHHHHHHHHH-hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 99999998876 699999999999999999999974 3667999999999999999999
Q ss_pred hhcCCCC-CceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHH
Q 043990 581 HFNDPSK-NEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQM 659 (911)
Q Consensus 581 ~Fn~~~~-~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~ 659 (911)
+||++.. ....|||||+||+.||||.+||+||+||..|||..+.|+|-|+||+||+|||||||||+.||+||+||.||.
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQV 1288 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQV 1288 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHH
Confidence 9998764 467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccCCCCCHHHHHHhhccCCCc
Q 043990 660 SKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDV 698 (911)
Q Consensus 660 ~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~~~~ 698 (911)
.|+.++.-|++.+.- .++++.+||.+||+|.+++
T Consensus 1289 TKqsls~RVVDeqQv-----~Rhy~~neLteLy~fep~~ 1322 (1567)
T KOG1015|consen 1289 TKQSLSFRVVDEQQV-----ERHYTMNELTELYTFEPDL 1322 (1567)
T ss_pred hHhhhhhhhhhHHHH-----HHHhhHhhhHHHhhcCCcc
Confidence 999999988886532 4899999999999998753
No 10
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-74 Score=640.40 Aligned_cols=470 Identities=29% Similarity=0.503 Sum_probs=381.5
Q ss_pred ccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 173 PITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 173 ~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
.|+.|..|.++|..||..|++|+..|+. .|.+| |||||||||||+|+|+++++|.... -..+|.|||+|+
T Consensus 557 tV~qPkil~ctLKEYQlkGLnWLvnlYd-----qGiNG-ILADeMGLGKTVQsisvlAhLaE~~----nIwGPFLVVtpa 626 (1185)
T KOG0388|consen 557 TVPQPKILKCTLKEYQLKGLNWLVNLYD-----QGING-ILADEMGLGKTVQSISVLAHLAETH----NIWGPFLVVTPA 626 (1185)
T ss_pred eccCchhhhhhhHHHhhccHHHHHHHHH-----ccccc-eehhhhccchhHHHHHHHHHHHHhc----cCCCceEEeehH
Confidence 4677889999999999999999999773 45555 9999999999999999999998765 257899999999
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEecCCcchhh-hccC---cccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCc
Q 043990 253 SLVSNWEAEIKKWVGGRVQLIALCESTRDDV-VSGI---DSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEA 328 (911)
Q Consensus 253 sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~-~~~~---~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEA 328 (911)
|.+.||.+||.+|+|. ++++.+.|+..... +... +..-.....++|+||||+++..+...|. ...|.++|+|||
T Consensus 627 StL~NWaqEisrFlP~-~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~q-kvKWQYMILDEA 704 (1185)
T KOG0388|consen 627 STLHNWAQEISRFLPS-FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQ-KVKWQYMILDEA 704 (1185)
T ss_pred HHHhHHHHHHHHhCcc-ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHH-hhhhhheehhHH
Confidence 9999999999999996 78888877654322 2111 1111234568999999999987766655 688999999999
Q ss_pred cccCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhh
Q 043990 329 HRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGI 389 (911)
Q Consensus 329 H~lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~ 389 (911)
+.||...+.+++ |+..|||+|++|++|.+|.+..+|..+|...|........ .+..
T Consensus 705 QAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~-----tlne 779 (1185)
T KOG0388|consen 705 QAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNT-----TLNE 779 (1185)
T ss_pred HHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcC-----CcCH
Confidence 999999887665 9999999999999999999999999999998865444333 3445
Q ss_pred hHHHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhc
Q 043990 390 ERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCN 469 (911)
Q Consensus 390 ~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~Lrklcn 469 (911)
..+.+|+.+++||||||.+++|..+|..|++..|+|.||-.|..+|..+..+.. ......+++.||++||
T Consensus 780 qqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----------~~E~~~~vmQlrKVCN 849 (1185)
T KOG0388|consen 780 QQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----------SMEMENLVMQLRKVCN 849 (1185)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHhcC
Confidence 667899999999999999999999999999999999999999999998644322 1122347889999999
Q ss_pred ChhhhHhhhhc---------------------------------------------------------CCCCC-------
Q 043990 470 HPKLIYDTIKS---------------------------------------------------------GNPGT------- 485 (911)
Q Consensus 470 hP~Ll~~~~~~---------------------------------------------------------~~~~~------- 485 (911)
||.|+...... +.+..
T Consensus 850 HPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~ 929 (1185)
T KOG0388|consen 850 HPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLS 929 (1185)
T ss_pred ChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccce
Confidence 99996321000 00000
Q ss_pred -------C---Ccc-------------------hhhhc--------------------CCcccccCCCC-----------
Q 043990 486 -------T---GFE-------------------DCIRF--------------------FPPEMFSGRSG----------- 505 (911)
Q Consensus 486 -------~---~~~-------------------~~~~~--------------------~~~e~~~~~~~----------- 505 (911)
. ..+ ...+. .||-.+.....
T Consensus 930 ~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~ 1009 (1185)
T KOG0388|consen 930 LEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHI 1009 (1185)
T ss_pred eeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCc
Confidence 0 000 00000 00000000000
Q ss_pred -----CCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Q 043990 506 -----SWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580 (911)
Q Consensus 506 -----~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~ 580 (911)
.+......++..|||+.+|++||..++. .|+|||+|.|.|+|+++|+++|..+||.|+||||+....+|..+|.
T Consensus 1010 pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLka-egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vr 1088 (1185)
T KOG0388|consen 1010 PLNTTIYVPPMNTFITDSGKLVVLDELLPKLKA-EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVR 1088 (1185)
T ss_pred ccccceecCcHHhhhccccceeeHHHHHHHhhc-CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHh
Confidence 0001112346789999999999999997 7999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 043990 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMS 660 (911)
Q Consensus 581 ~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~ 660 (911)
+|+. ++.||||+||.|||.||||++|++|||||.+|||..+.|||+|+||.||+++|+||||+++|||||+|+.+..+
T Consensus 1089 DwQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~q 1166 (1185)
T KOG0388|consen 1089 DWQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQ 1166 (1185)
T ss_pred hccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhh
Confidence 9997 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 043990 661 KEGLQKVIQQEQ 672 (911)
Q Consensus 661 K~~L~~~v~~~~ 672 (911)
|..++.+|..+.
T Consensus 1167 K~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1167 KDEVQQMVMHGN 1178 (1185)
T ss_pred HHHHHHHHHcCC
Confidence 999999988763
No 11
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-70 Score=636.10 Aligned_cols=446 Identities=33% Similarity=0.542 Sum_probs=375.3
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEA 260 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~ 260 (911)
..+|++||+.|++||...+. .+. .||||||||||||+|+|++|.+++.... ..+|.|||+|.+.+.||..
T Consensus 392 GG~Lk~YQl~GLqWmVSLyN-----NnL-NGILADEMGLGKTIQtIsLitYLmE~K~----~~GP~LvivPlstL~NW~~ 461 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYN-----NNL-NGILADEMGLGKTIQTISLITYLMEHKQ----MQGPFLIIVPLSTLVNWSS 461 (1157)
T ss_pred CCCCchhhhhhhHHHhhccC-----CCc-ccccchhcccchHHHHHHHHHHHHHHcc----cCCCeEEeccccccCCchh
Confidence 46899999999999997542 333 4499999999999999999999987653 4568999999999999999
Q ss_pred HHHHHhCCCeEEEEecCCc--chhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchh
Q 043990 261 EIKKWVGGRVQLIALCEST--RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 261 Ei~k~~~~~~~v~~~~~~~--r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
||.+|.|. +..+.|.|.. |......+. .++++|++|||+.+..+...+ ....|.++||||+|+|||..++.
T Consensus 462 Ef~kWaPS-v~~i~YkGtp~~R~~l~~qir-----~gKFnVLlTtyEyiikdk~lL-sKI~W~yMIIDEGHRmKNa~~KL 534 (1157)
T KOG0386|consen 462 EFPKWAPS-VQKIQYKGTPQQRSGLTKQQR-----HGKFNVLLTTYEYIIKDKALL-SKISWKYMIIDEGHRMKNAICKL 534 (1157)
T ss_pred hccccccc-eeeeeeeCCHHHHhhHHHHHh-----cccceeeeeeHHHhcCCHHHH-hccCCcceeecccccccchhhHH
Confidence 99999996 6666665543 222222222 267899999999997754444 47899999999999999988764
Q ss_pred cc--------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCC-CCCcHHHHHhhhhHHHHHHH
Q 043990 339 NR--------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGRE-PTATEEEKKLGIERSSELSA 397 (911)
Q Consensus 339 ~~--------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~-~~~~~~~~~~~~~~~~eL~~ 397 (911)
+. |++.|+|+||+|+.|.+|.+...|..+|..|+..... ...++++..+ .+.+|+.
T Consensus 535 t~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlL---IIrRLHk 611 (1157)
T KOG0386|consen 535 TDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLL---IIRRLHK 611 (1157)
T ss_pred HHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHH---HHHHHHH
Confidence 43 9999999999999999999999999999999976554 4455555443 3467999
Q ss_pred HhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHH-HhhhhhhHhhHHHHHHHHHHHhcChhhhHh
Q 043990 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKR-AISEETKQSKILAYITALKKLCNHPKLIYD 476 (911)
Q Consensus 398 ~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~-~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~ 476 (911)
+++||++||.+++|.+.||.|++.++.|.||..|+.+|..+.+...... ...+......+...++.||++||||.++..
T Consensus 612 VLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ 691 (1157)
T KOG0386|consen 612 VLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFAN 691 (1157)
T ss_pred hhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhh
Confidence 9999999999999999999999999999999999999999765432221 111223345678889999999999999843
Q ss_pred hhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH
Q 043990 477 TIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLC 556 (911)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L 556 (911)
.-..-. ..+ ....++..+||+..|+++|..++. +|++|++|++.|+.+++++.+|
T Consensus 692 ve~~~~----------~~~--------------~~~dL~R~sGKfELLDRiLPKLka-tgHRVLlF~qMTrlmdimEdyL 746 (1157)
T KOG0386|consen 692 VENSYT----------LHY--------------DIKDLVRVSGKFELLDRILPKLKA-TGHRVLLFSQMTRLMDILEDYL 746 (1157)
T ss_pred hccccc----------ccc--------------ChhHHHHhccHHHHHHhhhHHHHh-cCcchhhHHHHHHHHHHHHHHH
Confidence 211100 000 002446679999999999999997 8999999999999999999999
Q ss_pred HHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCc
Q 043990 557 RERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQK 636 (911)
Q Consensus 557 ~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQk 636 (911)
.-++|+|.|+||+|+..+|..+++.||.|++++|+||+||.|||.||||+.|++||+||++|||..+.||.+|+|||||+
T Consensus 747 ~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~ 826 (1157)
T KOG0386|consen 747 QIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQK 826 (1157)
T ss_pred hhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q 043990 637 KRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671 (911)
Q Consensus 637 k~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~ 671 (911)
++|.|+|+++.+++||+|+.++..|..+..-|...
T Consensus 827 ~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqa 861 (1157)
T KOG0386|consen 827 KEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQA 861 (1157)
T ss_pred hheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhc
Confidence 99999999999999999999999999988766554
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=4.4e-69 Score=581.04 Aligned_cols=489 Identities=26% Similarity=0.397 Sum_probs=377.4
Q ss_pred ccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 173 PITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 173 ~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
....|..|.-.|.|||++|+.|+...+ .....|||||||||+|||+|+|++++.-. ...|+|||||+
T Consensus 174 ~aeqP~dlii~LL~fQkE~l~Wl~~QE-----~Ss~~GGiLADEMGMGKTIQtIaLllae~--------~ra~tLVvaP~ 240 (791)
T KOG1002|consen 174 RAEQPDDLIIPLLPFQKEGLAWLTSQE-----ESSVAGGILADEMGMGKTIQTIALLLAEV--------DRAPTLVVAPT 240 (791)
T ss_pred cccCcccceecchhhhHHHHHHHHHhh-----hhhhccceehhhhccchHHHHHHHHHhcc--------ccCCeeEEccH
Confidence 356788888999999999999998755 34568999999999999999999997632 23469999999
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc----------------cccc
Q 043990 253 SLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS----------------KFSC 316 (911)
Q Consensus 253 sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~----------------~~~~ 316 (911)
-.+.||.+||.+++.+..+++.|+|..|......+ ..|+||+|||..+..... .+.+
T Consensus 241 VAlmQW~nEI~~~T~gslkv~~YhG~~R~~nikel-------~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLH 313 (791)
T KOG1002|consen 241 VALMQWKNEIERHTSGSLKVYIYHGAKRDKNIKEL-------MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLH 313 (791)
T ss_pred HHHHHHHHHHHHhccCceEEEEEecccccCCHHHh-------hcCcEEEEecHHHHHHHHhccccccccCCcccccchhh
Confidence 99999999999999999999999999887655544 468999999988732211 2334
Q ss_pred CCCCcEEEEcCccccCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCH----------------
Q 043990 317 SESCDLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDA---------------- 361 (911)
Q Consensus 317 ~~~~~lVIlDEAH~lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~---------------- 361 (911)
...|..||+||||.||+..+.+++ |++.|+|+|+.||+..+|..+
T Consensus 314 si~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftd 393 (791)
T KOG1002|consen 314 SIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTD 393 (791)
T ss_pred hceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecc
Confidence 567999999999999999987765 999999999999987765321
Q ss_pred ---------------HHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhc--cCCCcEEEEEE
Q 043990 362 ---------------AYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSN--HLPPKIIEVVC 424 (911)
Q Consensus 362 ---------------~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~--~LP~k~~~vv~ 424 (911)
-.|......||..-.. ...|.......+.++..+|+|||+-.-+. .|||++..+..
T Consensus 394 r~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~-------eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRr 466 (791)
T KOG1002|consen 394 RMHCDHCSHNIMQHTCFFNHFMLKPIQKFGV-------EGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRR 466 (791)
T ss_pred cccCCcccchhhhhhhhhcccccccchhhcc-------cCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeeh
Confidence 1122222223322111 11233444567888899999999866444 38999999999
Q ss_pred ecCCHHHHHHHHHHHHhHH--HHHHhhh---hhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCC------------
Q 043990 425 CKLTPLQSELYNHFIHSKN--VKRAISE---ETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTG------------ 487 (911)
Q Consensus 425 ~~ls~~Q~~lY~~~l~~~~--~~~~~~~---~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~------------ 487 (911)
--++..+.++|+.+..... +...+.. -.+..+++.+|++|||+..||.|+........+..+.
T Consensus 467 D~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~a 546 (791)
T KOG1002|consen 467 DFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPA 546 (791)
T ss_pred hhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChh
Confidence 9999999999998865322 2222222 2356789999999999999999986532211111100
Q ss_pred ----cchhhhcC-------------------CcccccCCCC-------------------CCCCCCCcccccchHHHHHH
Q 043990 488 ----FEDCIRFF-------------------PPEMFSGRSG-------------------SWTGGDGAWVELSGKMHVLA 525 (911)
Q Consensus 488 ----~~~~~~~~-------------------~~e~~~~~~~-------------------~~~~~~~~~~~~S~Kl~~L~ 525 (911)
...|...| +|.++.+.+- ........-...|.|+.+|.
T Consensus 547 ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~ 626 (791)
T KOG1002|consen 547 EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALV 626 (791)
T ss_pred hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHH
Confidence 01111111 1111111000 00111122345789999999
Q ss_pred HHHHHHhhcC-CCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccC
Q 043990 526 RLLGHLRQRT-DDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLN 604 (911)
Q Consensus 526 ~LL~~l~~~~-~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLN 604 (911)
+-|..++++. .-|.||||||+.+||+|.-.|.+.|+.++.|.|+|+.+.|...|+.|.+ +.++.|||+|.+|||+.||
T Consensus 627 EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVALN 705 (791)
T KOG1002|consen 627 EELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALN 705 (791)
T ss_pred HHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEee
Confidence 9888887632 3489999999999999999999999999999999999999999999997 6678899999999999999
Q ss_pred CCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCC
Q 043990 605 LIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLS 684 (911)
Q Consensus 605 L~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s 684 (911)
|+.|++|+++||||||+.+.||.+|+|||||.|||.|.||+..+||||+|+.+|.+|..+....+++.+.. ...++
T Consensus 706 LteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~A----i~kLt 781 (791)
T KOG1002|consen 706 LTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEA----ISKLT 781 (791)
T ss_pred echhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHH----HHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999988777654332 46899
Q ss_pred HHHHHHhhc
Q 043990 685 TEDLRDLFT 693 (911)
Q Consensus 685 ~~eL~~Lf~ 693 (911)
.+|++-||.
T Consensus 782 ~eDmqfLF~ 790 (791)
T KOG1002|consen 782 EEDMQFLFN 790 (791)
T ss_pred HHHHHHHhc
Confidence 999999995
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.1e-67 Score=589.22 Aligned_cols=479 Identities=28% Similarity=0.423 Sum_probs=383.5
Q ss_pred cccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC---CCCCCCCceEEEEe
Q 043990 174 ITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG---FDGKPMVKKAIIVT 250 (911)
Q Consensus 174 v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g---~~~~p~~~~~LIV~ 250 (911)
.+-|.++...|.|||+.|+.||..++ .....||||||+||||||+++|++|.+-.... ....+...++||||
T Consensus 316 te~P~g~~v~LmpHQkaal~Wl~wRE-----~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~ 390 (901)
T KOG4439|consen 316 TETPDGLKVELMPHQKAALRWLLWRE-----SQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIIC 390 (901)
T ss_pred cCCCCcceeecchhhhhhhhhhcccc-----cCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeC
Confidence 45677889999999999999998643 45678999999999999999999998754321 11222334699999
Q ss_pred CchhhHHHHHHHHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc---------ccccCCCC
Q 043990 251 PTSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS---------KFSCSESC 320 (911)
Q Consensus 251 P~sLl~qW~~Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~---------~~~~~~~~ 320 (911)
|.||+.||..|+.+-+.. .+.|+.++|..+.++.. ....+|+||||||..+..... .......|
T Consensus 391 PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~------~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W 464 (901)
T KOG4439|consen 391 PASLIHQWEAEVARRLEQNALSVYLYHGPNKREISA------KELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAW 464 (901)
T ss_pred cHHHHHHHHHHHHHHHhhcceEEEEecCCccccCCH------HHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhH
Confidence 999999999999998875 67899999988643322 123579999999998865111 11225679
Q ss_pred cEEEEcCccccCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCc
Q 043990 321 DLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTAT 381 (911)
Q Consensus 321 ~lVIlDEAH~lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~ 381 (911)
.+||+||||.+||++++... |++-|+|+|+.||+..+|++...|++....+-..+
T Consensus 465 ~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g------ 538 (901)
T KOG4439|consen 465 SRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG------ 538 (901)
T ss_pred HHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc------
Confidence 99999999999999987654 99999999999999999999999998876543221
Q ss_pred HHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhc-----cCCCcEEEEEEecCCHHHHHHHHHHHHhH--HHHHHhh-----
Q 043990 382 EEEKKLGIERSSELSAKVNQFILRRTNALLSN-----HLPPKIIEVVCCKLTPLQSELYNHFIHSK--NVKRAIS----- 449 (911)
Q Consensus 382 ~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~-----~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~--~~~~~~~----- 449 (911)
..+|+-++++.||||||+.+.. .||.+...++.++|+..+...|..++... .++..+.
T Consensus 539 ----------~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~ 608 (901)
T KOG4439|consen 539 ----------ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDR 608 (901)
T ss_pred ----------hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2457778899999999999887 79999999999999999999998765421 1111100
Q ss_pred ----------------------------------hhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcc------
Q 043990 450 ----------------------------------EETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFE------ 489 (911)
Q Consensus 450 ----------------------------------~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~------ 489 (911)
.....+.+|.++.+|||+|+||.++...+........++.
T Consensus 609 ~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~ 688 (901)
T KOG4439|consen 609 NNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQ 688 (901)
T ss_pred ccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhh
Confidence 0112245799999999999999776543322111111110
Q ss_pred -------------------hhh----hcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcch
Q 043990 490 -------------------DCI----RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYT 546 (911)
Q Consensus 490 -------------------~~~----~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~ 546 (911)
++. ..++.+. -.....|.|+..+...++.+.....+|+||.||++
T Consensus 689 ~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~------------Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwt 756 (901)
T KOG4439|consen 689 LEEDNLAELEKNDETDCSDDNCEDLPTAFPDQA------------FEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWT 756 (901)
T ss_pred hhhhHHHhhhhcccccccccccccccccchhhh------------cccccchhHHHHHHHHHHHHhhcccceeeehhHHH
Confidence 010 0011111 12234699999999999998666789999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHH
Q 043990 547 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQA 626 (911)
Q Consensus 547 ~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QA 626 (911)
.+|.+++..+...|+.|..++|....++|+.+|+.||....+..|+|+|..|||+||||++|||+|++|..|||+.+.||
T Consensus 757 svLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQA 836 (901)
T KOG4439|consen 757 SVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQA 836 (901)
T ss_pred HHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHH
Confidence 99999999999999999999999999999999999998777788999999999999999999999999999999999999
Q ss_pred HHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhcc
Q 043990 627 AARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTF 694 (911)
Q Consensus 627 igR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~ 694 (911)
-+|++|+||+|+|+||||++.||||++|...|..|..|+..|+.+.... ..+.++..+|+.||++
T Consensus 837 cDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr---~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 837 CDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATR---KMNKLTLADLKKLFGL 901 (901)
T ss_pred HHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCcccc---ccccccHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999998854321 3578999999999975
No 14
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.7e-64 Score=565.28 Aligned_cols=519 Identities=30% Similarity=0.536 Sum_probs=403.9
Q ss_pred cccccChhhhccChHHHHHHHHHHHHhhh---ccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEE
Q 043990 172 VPITVDPLLVRFLRPHQREGVQFMFECVS---GLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAII 248 (911)
Q Consensus 172 ~~v~v~p~l~~~LrphQ~egV~~m~~~~~---g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LI 248 (911)
..+.+-|.|...|.|||.-||+|||++.. |......+.|||||+.||||||+|.|+++-.+++.. .++.+|+
T Consensus 243 e~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT-----~AKtVL~ 317 (1387)
T KOG1016|consen 243 EDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHT-----KAKTVLV 317 (1387)
T ss_pred cceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcC-----ccceEEE
Confidence 45778899999999999999999999754 223345567999999999999999999999888875 4688999
Q ss_pred EeCchhhHHHHHHHHHHhCC----------CeEEEEecCCcch--hhhccCcccCCCCCCccEEEEehHHHHhhccc---
Q 043990 249 VTPTSLVSNWEAEIKKWVGG----------RVQLIALCESTRD--DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--- 313 (911)
Q Consensus 249 V~P~sLl~qW~~Ei~k~~~~----------~~~v~~~~~~~r~--~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--- 313 (911)
|+|-..+.||..|+..|+|. .+.++.+....+. ....-+..|. ....|+++.|++||.....
T Consensus 318 ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv---~~GGVlLvGYemfRLL~lk~~~ 394 (1387)
T KOG1016|consen 318 IVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWV---QTGGVLLVGYEMFRLLILKTLP 394 (1387)
T ss_pred EEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHh---ccCCEEEehHHHHHHHHHhccc
Confidence 99999999999999999974 1344444433221 1111122232 3456999999999743221
Q ss_pred ----------------------------------cccCCCCcEEEEcCccccCCccchhcc-------------------
Q 043990 314 ----------------------------------FSCSESCDLLICDEAHRLKNDQTLTNR------------------- 340 (911)
Q Consensus 314 ----------------------------------~~~~~~~~lVIlDEAH~lKN~~s~~~~------------------- 340 (911)
.......|+|||||+|+|||..+.++.
T Consensus 395 ~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQ 474 (1387)
T KOG1016|consen 395 KKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQ 474 (1387)
T ss_pred ccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccc
Confidence 001345799999999999998764332
Q ss_pred CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcEE
Q 043990 341 NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKII 420 (911)
Q Consensus 341 N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~ 420 (911)
|+|-|+|.|++|++|.+||+..+|...|+.||..|...+.+....++...|...|+.++..|+-||+-..+...||.|.+
T Consensus 475 NNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~E 554 (1387)
T KOG1016|consen 475 NNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKE 554 (1387)
T ss_pred cchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCC--------cchhh
Q 043990 421 EVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTG--------FEDCI 492 (911)
Q Consensus 421 ~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~--------~~~~~ 492 (911)
+++.+++|..||++|+.|+.... +.+.......-..|.++....++.|||..+|..++........ +....
T Consensus 555 yViLvr~s~iQR~LY~~Fm~d~~-r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~ 633 (1387)
T KOG1016|consen 555 YVILVRKSQIQRQLYRNFMLDAK-REIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQ 633 (1387)
T ss_pred eEEEEeHHHHHHHHHHHHHHHHH-HhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccc
Confidence 99999999999999999874322 2222222223356777888889999999998776553221110 00000
Q ss_pred hcCCcccc-----------------cC--------CCCCCCCC------------------CCcccccchHHHHHHHHHH
Q 043990 493 RFFPPEMF-----------------SG--------RSGSWTGG------------------DGAWVELSGKMHVLARLLG 529 (911)
Q Consensus 493 ~~~~~e~~-----------------~~--------~~~~~~~~------------------~~~~~~~S~Kl~~L~~LL~ 529 (911)
...+|-.. .+ ....+... +....+.+.|+-.+.+++.
T Consensus 634 ~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~d 713 (1387)
T KOG1016|consen 634 QQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILD 713 (1387)
T ss_pred ccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeec
Confidence 00000000 00 00000000 1111233556665666665
Q ss_pred HHhhcCCCeEEEEEcchHHHHHHHHHHHHcC------------------CCEEEEeCCCCHHHHHHHHHhhcCCCCCceE
Q 043990 530 HLRQRTDDRIVLVSNYTQTLDLFAQLCRERR------------------YPYLRLDGTTSISKRQKLVNHFNDPSKNEFV 591 (911)
Q Consensus 530 ~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~g------------------i~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v 591 (911)
+--+ -|.|+||||+....|++|+..|.++. ..|.+++|.++..+|.++|++||++.+-...
T Consensus 714 es~~-~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWl 792 (1387)
T KOG1016|consen 714 ESTQ-IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWL 792 (1387)
T ss_pred cccc-cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceee
Confidence 5443 58999999999999999999998752 3589999999999999999999997777779
Q ss_pred EEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q 043990 592 FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE 671 (911)
Q Consensus 592 ~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~ 671 (911)
||||+++|..|+||++||++|+||..|||..+.||+.|++|+||+|+|+||||++..|+|-+||.||.+|++++..|+++
T Consensus 793 fllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd 872 (1387)
T KOG1016|consen 793 FLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDD 872 (1387)
T ss_pred eeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred ccccccccCCCCCHHHHHHhhccCCCchhhhhhhc
Q 043990 672 QTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706 (911)
Q Consensus 672 ~~~~~~~~~~~~s~~eL~~Lf~~~~~~~~~t~d~~ 706 (911)
..- ...||..||..|+.+.+ ...++|+..
T Consensus 873 ~np-----~an~s~Ke~enLl~~~e-a~~~~~~~v 901 (1387)
T KOG1016|consen 873 ANP-----DANISQKELENLLMYDE-AQDVNHDKV 901 (1387)
T ss_pred cCc-----cccccHHHHHHHhhhhh-cccCccccc
Confidence 543 35799999999998864 334455543
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-59 Score=588.73 Aligned_cols=483 Identities=36% Similarity=0.563 Sum_probs=383.4
Q ss_pred hhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHH
Q 043990 178 PLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSN 257 (911)
Q Consensus 178 p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~q 257 (911)
..+...|||||.+|+.||.+. + .....||||||+||+|||+|+|+++.+++..... ..+++|||||.+++.|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~----l-~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~---~~~~~liv~p~s~~~n 404 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSEL----L-RSNLLGGILADDMGLGKTVQTIALLLSLLESIKV---YLGPALIVVPASLLSN 404 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHH----H-HhccCCCcccccccchhHHHHHHHHHhhhhcccC---CCCCeEEEecHHHHHH
Confidence 677789999999999999841 1 2334688999999999999999999886555421 1468999999999999
Q ss_pred HHHHHHHHhCCCeE-EEEecCCcc-----hhhhccCcccCCCCCCccEEEEehHHHHh---hccccccCCCCcEEEEcCc
Q 043990 258 WEAEIKKWVGGRVQ-LIALCESTR-----DDVVSGIDSFTDPCSSLQVLIVSYETFRM---HSSKFSCSESCDLLICDEA 328 (911)
Q Consensus 258 W~~Ei~k~~~~~~~-v~~~~~~~r-----~~~~~~~~~~~~~~~~~~VvI~Sye~l~~---~~~~~~~~~~~~lVIlDEA 328 (911)
|.+|+.+|.+. +. +..+++... ............ ...++|+++||+.++. ....+. ...|+.+|+|||
T Consensus 405 w~~e~~k~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~v~itty~~l~~~~~~~~~l~-~~~~~~~v~DEa 481 (866)
T COG0553 405 WKREFEKFAPD-LRLVLVYHGEKSELDKKREALRDLLKLHL-VIIFDVVITTYELLRRFLVDHGGLK-KIEWDRVVLDEA 481 (866)
T ss_pred HHHHHhhhCcc-ccceeeeeCCcccccHHHHHHHHHhhhcc-cceeeEEechHHHHHHhhhhHHHHh-hceeeeeehhhH
Confidence 99999999986 34 666665553 222211110000 1237899999999988 555454 678999999999
Q ss_pred cccCCccchhcc-------------------CCHHHHHHhhh-hcCCCCCC-CHHHHHHHHhhhhccCCCCCCcHHHHHh
Q 043990 329 HRLKNDQTLTNR-------------------NDLEEFFAMVN-FTNPGILG-DAAYFRRYYETSIICGREPTATEEEKKL 387 (911)
Q Consensus 329 H~lKN~~s~~~~-------------------N~l~El~sLl~-fl~P~~l~-~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 387 (911)
|++||..+..++ |++.|||++++ |++|++++ +...|.++|..|+........ ...
T Consensus 482 ~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~ 557 (866)
T COG0553 482 HRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP----LEA 557 (866)
T ss_pred HHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc----hhh
Confidence 999999987665 99999999999 99999999 569999999999877766543 222
Q ss_pred hhhHHHHHHHHhhHHhhhhcHHH--HhccCCCcEEEEEEecCCHHHHHHHHHHHHhH-----HHHHHhhhhh-------h
Q 043990 388 GIERSSELSAKVNQFILRRTNAL--LSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK-----NVKRAISEET-------K 453 (911)
Q Consensus 388 ~~~~~~eL~~~l~~~ilRRtk~~--v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~-----~~~~~~~~~~-------~ 453 (911)
.......|+.++.+|++||++.+ +...||++.+.+++|.+++.|+.+|..++... .+........ .
T Consensus 558 ~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (866)
T COG0553 558 RELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDS 637 (866)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccch
Confidence 23344558999999999999999 88899999999999999999999999987721 1112111111 1
Q ss_pred HhhHHHHHHHHHHHhcChhhhHhhh-hcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccc-hHHHHHHHHH-HH
Q 043990 454 QSKILAYITALKKLCNHPKLIYDTI-KSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELS-GKMHVLARLL-GH 530 (911)
Q Consensus 454 ~~~~l~~l~~LrklcnhP~Ll~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S-~Kl~~L~~LL-~~ 530 (911)
...++..+++||++|+||.++.... ...... .. ..... .............+ +|+..+.++| ..
T Consensus 638 ~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~---~~----~~~~~------~~~~~~~~~~~~~s~~k~~~l~~ll~~~ 704 (866)
T COG0553 638 ELNILALLTRLRQICNHPALVDEGLEATFDRI---VL----LLRED------KDFDYLKKPLIQLSKGKLQALDELLLDK 704 (866)
T ss_pred hhHHHHHHHHHHHhccCccccccccccccchh---hh----hhhcc------cccccccchhhhccchHHHHHHHHHHHH
Confidence 5678999999999999999987542 100000 00 00000 00000112234457 9999999999 67
Q ss_pred HhhcCCC--eEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCC
Q 043990 531 LRQRTDD--RIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGG 608 (911)
Q Consensus 531 l~~~~~~--KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~A 608 (911)
+.. .++ |+|||++|++++++++..|...++.|++++|+++.+.|+.+|++|+++ ...++|++|++|||.||||++|
T Consensus 705 ~~~-~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a 782 (866)
T COG0553 705 LLE-EGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGA 782 (866)
T ss_pred HHh-hcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeeccc
Confidence 665 577 999999999999999999999999999999999999999999999986 5677999999999999999999
Q ss_pred CEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc-ccccccccCCCCCHHH
Q 043990 609 NRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQE-QTDSSATQGNFLSTED 687 (911)
Q Consensus 609 n~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~-~~~~~~~~~~~~s~~e 687 (911)
++||+|||||||+.+.||++|+||+||+++|.||||+++|||||+|+++|..|+.+...+.+. ... ....++.++
T Consensus 783 ~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~----~~~~~~~~~ 858 (866)
T COG0553 783 DTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEK----ELSKLSIED 858 (866)
T ss_pred ceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhccc----chhhccHHH
Confidence 999999999999999999999999999999999999999999999999999999999988875 322 246789999
Q ss_pred HHHhhcc
Q 043990 688 LRDLFTF 694 (911)
Q Consensus 688 L~~Lf~~ 694 (911)
+..||..
T Consensus 859 ~~~l~~~ 865 (866)
T COG0553 859 LLDLFSL 865 (866)
T ss_pred HHHHhcc
Confidence 9999975
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=3.8e-54 Score=466.70 Aligned_cols=410 Identities=25% Similarity=0.350 Sum_probs=317.7
Q ss_pred cccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043990 174 ITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS 253 (911)
Q Consensus 174 v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s 253 (911)
.+.||.|...|.|||++||.|.++ +.+.++||||||||||+|||+++..+... +|.|||||++
T Consensus 189 ev~d~kLvs~LlPFQreGv~faL~---------RgGR~llADeMGLGKTiQAlaIA~yyraE--------wplliVcPAs 251 (689)
T KOG1000|consen 189 EVMDPKLVSRLLPFQREGVIFALE---------RGGRILLADEMGLGKTIQALAIARYYRAE--------WPLLIVCPAS 251 (689)
T ss_pred hccCHHHHHhhCchhhhhHHHHHh---------cCCeEEEecccccchHHHHHHHHHHHhhc--------CcEEEEecHH
Confidence 345899999999999999999975 35688999999999999999999887654 4899999999
Q ss_pred hhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCC
Q 043990 254 LVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 254 Ll~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN 333 (911)
+...|++++.+|+|....+.++.+... ...+......|.|+||+.+......+. ...|.+||+||+|+||+
T Consensus 252 vrftWa~al~r~lps~~pi~vv~~~~D--------~~~~~~t~~~v~ivSye~ls~l~~~l~-~~~~~vvI~DEsH~Lk~ 322 (689)
T KOG1000|consen 252 VRFTWAKALNRFLPSIHPIFVVDKSSD--------PLPDVCTSNTVAIVSYEQLSLLHDILK-KEKYRVVIFDESHMLKD 322 (689)
T ss_pred HhHHHHHHHHHhcccccceEEEecccC--------CccccccCCeEEEEEHHHHHHHHHHHh-cccceEEEEechhhhhc
Confidence 999999999999997433333332221 111122345699999999987766655 56799999999999999
Q ss_pred ccchhcc---------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHH
Q 043990 334 DQTLTNR---------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERS 392 (911)
Q Consensus 334 ~~s~~~~---------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 392 (911)
..+++.+ .+..|||.++..+++.++.++.+|-.+|+.--..... ....+..++
T Consensus 323 sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~------~Dykg~tnl 396 (689)
T KOG1000|consen 323 SKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFC------FDYKGCTNL 396 (689)
T ss_pred cchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCcccccee------eecCCCCCH
Confidence 9988776 8889999999999999999999999999874332222 122345677
Q ss_pred HHHHHHhhH-HhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcCh
Q 043990 393 SELSAKVNQ-FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHP 471 (911)
Q Consensus 393 ~eL~~~l~~-~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP 471 (911)
.+|+-++.. .|+||+|.++.++||+|...+++ ...+.+...-+.+.....- . .......+ +|-
T Consensus 397 ~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~-~~~gr~da~~~~lv~~a~~---------~-t~~~~~e~-----~~~ 460 (689)
T KOG1000|consen 397 EELAALLFKRLMIRRLKADVLKQLPPKRREVVY-VSGGRIDARMDDLVKAAAD---------Y-TKVNSMER-----KHE 460 (689)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCccceEEEE-EcCCccchHHHHHHHHhhh---------c-chhhhhhh-----hhH
Confidence 889888765 68999999999999999655554 3344443333333221110 0 00000000 111
Q ss_pred hhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHH---HhhcCCCeEEEEEcchHH
Q 043990 472 KLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGH---LRQRTDDRIVLVSNYTQT 548 (911)
Q Consensus 472 ~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~---l~~~~~~KVIIFSq~~~~ 548 (911)
.++...-. ..-.|+..+.+.|.. +...++.|+|||+.++.+
T Consensus 461 ~l~l~y~~------------------------------------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~v 504 (689)
T KOG1000|consen 461 SLLLFYSL------------------------------------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIV 504 (689)
T ss_pred HHHHHHHH------------------------------------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHH
Confidence 11110000 013455555555444 233478999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHH
Q 043990 549 LDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA 628 (911)
Q Consensus 549 ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAig 628 (911)
||-|+..+..+++.++||||+|+...|+.+++.|+. +....|-+||..|+|.||+|++|+.|||.+.+|||....||.+
T Consensus 505 Ld~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~-seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAED 583 (689)
T KOG1000|consen 505 LDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQT-SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAED 583 (689)
T ss_pred HHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhcc-ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechh
Confidence 999999999999999999999999999999999997 5577899999999999999999999999999999999999999
Q ss_pred hhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 043990 629 RVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVI 668 (911)
Q Consensus 629 R~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v 668 (911)
|+||+||+..|.||+|+++||+||.+|....+|......+
T Consensus 584 RaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~ 623 (689)
T KOG1000|consen 584 RAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSV 623 (689)
T ss_pred hhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998766554
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.7e-51 Score=501.83 Aligned_cols=411 Identities=21% Similarity=0.282 Sum_probs=299.1
Q ss_pred hhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHH
Q 043990 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWE 259 (911)
Q Consensus 180 l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~ 259 (911)
....|+|||...+.++.. ....++|||||||||||++|++++..++..+ ..+|+|||||++|+.||.
T Consensus 149 ~~~~l~pHQl~~~~~vl~--------~~~~R~LLADEvGLGKTIeAglil~~l~~~g-----~~~rvLIVvP~sL~~QW~ 215 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGR--------RHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-----RAERVLILVPETLQHQWL 215 (956)
T ss_pred CCCCCCHHHHHHHHHHhh--------ccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-----CCCcEEEEcCHHHHHHHH
Confidence 345799999999887653 2346889999999999999999999887776 467999999999999999
Q ss_pred HHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc---ccccCCCCcEEEEcCccccCCccc
Q 043990 260 AEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS---KFSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 260 ~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~---~~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
.|+.+|++..+.++ .+..-..... .-..++...+++|+||+.++.+.. .+. ...|++|||||||++++..+
T Consensus 216 ~El~~kF~l~~~i~--~~~~~~~~~~---~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~-~~~wdlvIvDEAH~lk~~~~ 289 (956)
T PRK04914 216 VEMLRRFNLRFSLF--DEERYAEAQH---DADNPFETEQLVICSLDFLRRNKQRLEQAL-AAEWDLLVVDEAHHLVWSEE 289 (956)
T ss_pred HHHHHHhCCCeEEE--cCcchhhhcc---cccCccccCcEEEEEHHHhhhCHHHHHHHh-hcCCCEEEEechhhhccCCC
Confidence 99999887544333 2221111100 011334467899999999986432 233 46899999999999996432
Q ss_pred ---hhcc---------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhh--hh-------ccCCCCCCcHH
Q 043990 337 ---LTNR---------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYET--SI-------ICGREPTATEE 383 (911)
Q Consensus 337 ---~~~~---------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~--pi-------~~~~~~~~~~~ 383 (911)
+.++ |+..|+|++++|++|+.|++...|.+..+. |+ ..+........
T Consensus 290 ~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~ 369 (956)
T PRK04914 290 APSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDAL 369 (956)
T ss_pred CcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHH
Confidence 2222 999999999999999999999999875543 21 11211010000
Q ss_pred HHH---hh------------------h-hHHHHHHHH-----hhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHH
Q 043990 384 EKK---LG------------------I-ERSSELSAK-----VNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYN 436 (911)
Q Consensus 384 ~~~---~~------------------~-~~~~eL~~~-----l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~ 436 (911)
... +. . .+.+-+..+ ..++|+|+++..+. .+|.+..+.+.+++.+..+..+.
T Consensus 370 ~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~ 448 (956)
T PRK04914 370 NALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIK 448 (956)
T ss_pred HHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHH
Confidence 000 00 0 011111112 23678899999986 58999999998888664322221
Q ss_pred HHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccc
Q 043990 437 HFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVE 516 (911)
Q Consensus 437 ~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 516 (911)
. .. ...+++ +.+|..++..... ...+..
T Consensus 449 ~----~~-----------------~~~~~~-~l~pe~~~~~~~~------------------------------~~~~~~ 476 (956)
T PRK04914 449 V----SL-----------------EARARD-MLYPEQIYQEFED------------------------------NATWWN 476 (956)
T ss_pred H----hH-----------------HHHHHh-hcCHHHHHHHHhh------------------------------hhhccc
Confidence 1 00 001111 2334332221100 012344
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH-HHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLC-RERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L-~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
.++|+..|.++|+.. .++|+||||++..+++.|...| ...|++++.++|+|+..+|.++++.|++++.+. .+||+
T Consensus 477 ~d~Ki~~L~~~L~~~---~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~-~VLIs 552 (956)
T PRK04914 477 FDPRVEWLIDFLKSH---RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGA-QVLLC 552 (956)
T ss_pred cCHHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCc-cEEEe
Confidence 578999999998865 3689999999999999999999 467999999999999999999999999754232 47889
Q ss_pred cCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 043990 596 SKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK 666 (911)
Q Consensus 596 tkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~ 666 (911)
|++||+||||+.|++||+||+||||..+.||+||+||+||+++|.||.++.+||++|+|++....|.++..
T Consensus 553 TdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife 623 (956)
T PRK04914 553 SEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFE 623 (956)
T ss_pred chhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999886544
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.7e-47 Score=448.75 Aligned_cols=455 Identities=25% Similarity=0.362 Sum_probs=342.9
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCC--CCCCCCceEEEEeCchhhHHHHHHHHHH
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGF--DGKPMVKKAIIVTPTSLVSNWEAEIKKW 265 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~--~~~p~~~~~LIV~P~sLl~qW~~Ei~k~ 265 (911)
|+....|++.-. .......|||+||+||+|||+++|+++........ .+....+.+|||||.+++.||..|+.+.
T Consensus 135 ~~~~~~~~~~~~---~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~ 211 (674)
T KOG1001|consen 135 LKQKYRWSLLKS---REQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKV 211 (674)
T ss_pred HHHHHHHHhhcc---cccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhcc
Confidence 444444554322 24566789999999999999999999976433221 0112356799999999999999999666
Q ss_pred hCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhcc----
Q 043990 266 VGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR---- 340 (911)
Q Consensus 266 ~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~---- 340 (911)
... .+.++.++| +.+... ....++||||||.++.. ..+. ...|-+||+||||.++|.+++.++
T Consensus 212 ~~~~~l~v~v~~g--r~kd~~-------el~~~dVVltTy~il~~--~~l~-~i~w~Riildea~~ikn~~tq~~~a~~~ 279 (674)
T KOG1001|consen 212 TEEDKLSIYVYHG--RTKDKS-------ELNSYDVVLTTYDILKN--SPLV-KIKWLRIVLDEAHTIKNKDTQIFKAVCQ 279 (674)
T ss_pred CCccceEEEEecc--cccccc-------hhcCCceEEeeHHHhhc--cccc-ceeEEEEEeccccccCCcchHhhhhhee
Confidence 654 566666776 332222 23568899999999975 2222 467999999999999999998765
Q ss_pred ---------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhh
Q 043990 341 ---------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILR 405 (911)
Q Consensus 341 ---------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilR 405 (911)
|++.++|+++.|+.-.++.....|...+..|+..+.. .+....+..++..+++|
T Consensus 280 L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-----------~~~~k~l~~~L~~v~lr 348 (674)
T KOG1001|consen 280 LDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-----------KEGVKTLQGILKKVMLR 348 (674)
T ss_pred eccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-----------HHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888754432 34456788999999999
Q ss_pred hcHHHHh-----ccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHH--HHhh---hhhhHhhHHHHHHHHHHHhcChhhhH
Q 043990 406 RTNALLS-----NHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVK--RAIS---EETKQSKILAYITALKKLCNHPKLIY 475 (911)
Q Consensus 406 Rtk~~v~-----~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~--~~~~---~~~~~~~~l~~l~~LrklcnhP~Ll~ 475 (911)
|++.... -.|||++..++.+.++..++.+|..+....... .... -......++..+.+||++|+||.++.
T Consensus 349 rtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~ 428 (674)
T KOG1001|consen 349 RTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVM 428 (674)
T ss_pred ccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhh
Confidence 9986322 269999999999999999999999876543322 1111 12345678889999999999999986
Q ss_pred hhhhcCCCCCCC----------------cchhhh-----------cCCccc----ccCCCCC--------------CC--
Q 043990 476 DTIKSGNPGTTG----------------FEDCIR-----------FFPPEM----FSGRSGS--------------WT-- 508 (911)
Q Consensus 476 ~~~~~~~~~~~~----------------~~~~~~-----------~~~~e~----~~~~~~~--------------~~-- 508 (911)
............ ...|.. .++.+. +...... ..
T Consensus 429 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~ 508 (674)
T KOG1001|consen 429 YEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSAN 508 (674)
T ss_pred hhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcc
Confidence 443222111000 000000 000000 0000000 00
Q ss_pred ---CCCCcccccchHHHHHHHHHHHHhhcCC-CeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcC
Q 043990 509 ---GGDGAWVELSGKMHVLARLLGHLRQRTD-DRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFND 584 (911)
Q Consensus 509 ---~~~~~~~~~S~Kl~~L~~LL~~l~~~~~-~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~ 584 (911)
.........|.|+..+.++|..... .. .|+|||||++.++++++..|...++.+.+++|.++...|.+.+..|..
T Consensus 509 ~~~~~~~~~~~~s~ki~~~~~~l~~~~~-s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~ 587 (674)
T KOG1001|consen 509 PLPSIINDLLPESSKIYAFLKILQAKEM-SEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPC 587 (674)
T ss_pred cccchhhhccchhhhhHHHHHHHhhccC-CCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhccccc
Confidence 0000011157888888888884433 33 399999999999999999999999999999999999999999999994
Q ss_pred CCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 043990 585 PSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664 (911)
Q Consensus 585 ~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L 664 (911)
+....|+++|.+|||.||||+.|++||++||||||+.+.||++|+||+||+|+|+|+||+..+|+||+|...|.+|+.+
T Consensus 588 -~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~ 666 (674)
T KOG1001|consen 588 -DPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREY 666 (674)
T ss_pred -CccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHH
Confidence 5667799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHh
Q 043990 665 QKVIQQ 670 (911)
Q Consensus 665 ~~~v~~ 670 (911)
.+...+
T Consensus 667 ~~~a~~ 672 (674)
T KOG1001|consen 667 NASAFG 672 (674)
T ss_pred Hhhhcc
Confidence 876643
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=7.6e-40 Score=381.07 Aligned_cols=367 Identities=31% Similarity=0.477 Sum_probs=293.0
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAE 261 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~E 261 (911)
..|.|||.+|++|+..++ ....-+|||||||+|||+|++.++..+...+.. ..+.||++|.+.+.+|..|
T Consensus 294 g~L~~~qleGln~L~~~w------s~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~----~~P~Lv~ap~sT~~nwe~e 363 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISW------SPGVDAILADEMGLGKTVQSIVFLYSLPKEIHS----PGPPLVVAPLSTIVNWERE 363 (696)
T ss_pred ccccccchhhhhhhhccc------ccCCCcccchhhcCCceeeEEEEEeecccccCC----CCCceeeccCccccCCCCc
Confidence 689999999999997654 445567999999999999999999988766532 3578999999999999999
Q ss_pred HHHHhCCCeEEEEecCCcc--hhhhccC--------------ccc-CCCCCCccEEEEehHHHHhhccccccCCCCcEEE
Q 043990 262 IKKWVGGRVQLIALCESTR--DDVVSGI--------------DSF-TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLI 324 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r--~~~~~~~--------------~~~-~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVI 324 (911)
+..|++. ..+..+.|..+ .-+.... ... .....+++|..++|++......-+. ...|.++|
T Consensus 364 ~~~wap~-~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~-~v~w~~li 441 (696)
T KOG0383|consen 364 FELWAPS-FYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILF-SVQWGLLI 441 (696)
T ss_pred hhccCCC-cccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHh-hhhcceeE
Confidence 9999986 33333333322 1111100 000 0122356899999999876555443 68899999
Q ss_pred EcCccccCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHH
Q 043990 325 CDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEK 385 (911)
Q Consensus 325 lDEAH~lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 385 (911)
+||+|++||..++..+ |++.|||++|+|+.|+.+++...|...|..-.
T Consensus 442 vde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~------------- 508 (696)
T KOG0383|consen 442 VDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDIS------------- 508 (696)
T ss_pred eechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhh-------------
Confidence 9999999999876554 99999999999999999999999988775422
Q ss_pred HhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHH
Q 043990 386 KLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALK 465 (911)
Q Consensus 386 ~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~Lr 465 (911)
..+....|+.++.++++||.+.++.+.+|.|++.++.+.|++.|.++|+.++... ...... ......++..++.||
T Consensus 509 --~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n-~~~l~~-~~~~~s~~n~~mel~ 584 (696)
T KOG0383|consen 509 --CEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRN-WQGLLA-GVHQYSLLNIVMELR 584 (696)
T ss_pred --HHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCC-hHHHhh-cchhHHHHHHHHHHH
Confidence 2345678999999999999999999999999999999999999999999876542 222221 445567789999999
Q ss_pred HHhcChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcc
Q 043990 466 KLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNY 545 (911)
Q Consensus 466 klcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~ 545 (911)
|.|+||+++... +..... .......+++.|+|+..|..+++.++. .++||+||+|+
T Consensus 585 K~~~hpy~~~~~-e~~~~~----------------------~~~~~~~l~k~~~k~~~l~~~~~~l~~-~ghrvl~~~q~ 640 (696)
T KOG0383|consen 585 KQCNHPYLSPLE-EPLEEN----------------------GEYLGSALIKASGKLTLLLKMLKKLKS-SGHRVLIFSQM 640 (696)
T ss_pred HhhcCcccCccc-cccccc----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHH
Confidence 999999997541 100000 000012346679999999999999997 79999999999
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccc
Q 043990 546 TQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCG 602 (911)
Q Consensus 546 ~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~G 602 (911)
++++|+++.+|...+ .|.|+||......|+.++++||.+.+..|+||+||+|||.|
T Consensus 641 ~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 641 IHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 999999999999999 99999999999999999999999899999999999999988
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7e-35 Score=345.52 Aligned_cols=344 Identities=18% Similarity=0.287 Sum_probs=239.5
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch-hhHHHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS-LVSNWE 259 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s-Ll~qW~ 259 (911)
...|||||.+++.+|+. ....++|||+++||+|||+++++++..+ .+++|||||++ |+.||.
T Consensus 253 ~~~LRpYQ~eAl~~~~~-------~gr~r~GIIvLPtGaGKTlvai~aa~~l----------~k~tLILvps~~Lv~QW~ 315 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG-------NGRARSGIIVLPCGAGKSLVGVTAACTV----------KKSCLVLCTSAVSVEQWK 315 (732)
T ss_pred CCCcCHHHHHHHHHHHh-------cCCCCCcEEEeCCCCChHHHHHHHHHHh----------CCCEEEEeCcHHHHHHHH
Confidence 46799999999999964 1123567999999999999999988764 24799999986 589999
Q ss_pred HHHHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc---------ccccCCCCcEEEEcCcc
Q 043990 260 AEIKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS---------KFSCSESCDLLICDEAH 329 (911)
Q Consensus 260 ~Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~---------~~~~~~~~~lVIlDEAH 329 (911)
++|.+|+.. ...+..+.+..+... ....+|+|+||+++..... .......|++||+||||
T Consensus 316 ~ef~~~~~l~~~~I~~~tg~~k~~~----------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH 385 (732)
T TIGR00603 316 QQFKMWSTIDDSQICRFTSDAKERF----------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH 385 (732)
T ss_pred HHHHHhcCCCCceEEEEecCccccc----------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc
Confidence 999999753 234444444433211 1235799999999853211 11224579999999999
Q ss_pred ccCCccchhccCCHHHHHHhhhhcC-CCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcH
Q 043990 330 RLKNDQTLTNRNDLEEFFAMVNFTN-PGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTN 408 (911)
Q Consensus 330 ~lKN~~s~~~~N~l~El~sLl~fl~-P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk 408 (911)
++.+... ..++..+. +..+|=. .+|+. . ......|..++.|.+.+-..
T Consensus 386 ~lpA~~f----------r~il~~l~a~~RLGLT-------ATP~R------------e--D~~~~~L~~LiGP~vye~~~ 434 (732)
T TIGR00603 386 VVPAAMF----------RRVLTIVQAHCKLGLT-------ATLVR------------E--DDKITDLNFLIGPKLYEANW 434 (732)
T ss_pred cccHHHH----------HHHHHhcCcCcEEEEe-------ecCcc------------c--CCchhhhhhhcCCeeeecCH
Confidence 9954321 11222111 1011100 00110 0 01123466667777666666
Q ss_pred HHHh--ccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCC
Q 043990 409 ALLS--NHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTT 486 (911)
Q Consensus 409 ~~v~--~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~ 486 (911)
.++. .+|.+-....|+|+|++.....|.. ... . .+.. +.
T Consensus 435 ~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~---~~~----------~---------~k~~------l~----------- 475 (732)
T TIGR00603 435 MELQKKGFIANVQCAEVWCPMTPEFYREYLR---ENS----------R---------KRML------LY----------- 475 (732)
T ss_pred HHHHhCCccccceEEEEEecCCHHHHHHHHH---hcc----------h---------hhhH------Hh-----------
Confidence 5654 4688878888999999875444422 100 0 0000 00
Q ss_pred CcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEE
Q 043990 487 GFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRL 566 (911)
Q Consensus 487 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~L 566 (911)
.....|+.++..++..... .++|+||||+++..++.+...| +. ..+
T Consensus 476 ----------------------------~~np~K~~~~~~Li~~he~-~g~kiLVF~~~~~~l~~~a~~L---~~--~~I 521 (732)
T TIGR00603 476 ----------------------------VMNPNKFRACQFLIRFHEQ-RGDKIIVFSDNVFALKEYAIKL---GK--PFI 521 (732)
T ss_pred ----------------------------hhChHHHHHHHHHHHHHhh-cCCeEEEEeCCHHHHHHHHHHc---CC--ceE
Confidence 0014688888888876543 6899999999999988888776 33 458
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCC-CcchHHHHHHhhhhcCCccc-----EE
Q 043990 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDW-NPANDKQAAARVWRDGQKKR-----VF 640 (911)
Q Consensus 567 dGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~W-NPa~~~QAigR~~RiGQkk~-----V~ 640 (911)
+|.|+..+|.+++++|+.+. ...+|+++++|++||||+.|++||++++++ |+..+.||+||+.|.+..+. .+
T Consensus 522 ~G~ts~~ER~~il~~Fr~~~--~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~ 599 (732)
T TIGR00603 522 YGPTSQQERMQILQNFQHNP--KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAF 599 (732)
T ss_pred ECCCCHHHHHHHHHHHHhCC--CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccce
Confidence 99999999999999998632 224677789999999999999999999986 99999999999999987654 78
Q ss_pred EEEEEeCCCHHHHHHHH
Q 043990 641 IYRFLSTGTIEEKVYQR 657 (911)
Q Consensus 641 VyrLi~~gTIEEkI~~r 657 (911)
+|.|++++|.|+..-++
T Consensus 600 fY~lVs~dT~E~~~s~~ 616 (732)
T TIGR00603 600 FYSLVSKDTQEMYYSTK 616 (732)
T ss_pred EEEEecCCchHHHHHHH
Confidence 99999999999988544
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=3.2e-35 Score=323.32 Aligned_cols=267 Identities=33% Similarity=0.558 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHhh---hccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHH
Q 043990 187 HQREGVQFMFECV---SGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIK 263 (911)
Q Consensus 187 hQ~egV~~m~~~~---~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~ 263 (911)
||++||.||+.++ .+.......+|||||||||+|||+++++++..+...+... ..+++|||||++++.||..|+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~--~~~~~LIv~P~~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQR--GEKKTLIVVPSSLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTS--S-S-EEEEE-TTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccc--cccceeEeeccchhhhhhhhhc
Confidence 8999999999875 1112235678999999999999999999999887765322 1246999999999999999999
Q ss_pred HHhCC-CeEEEEecCCc-chhhhccCcccCCCCCCccEEEEehHHHH-----hhccccccCCCCcEEEEcCccccCCccc
Q 043990 264 KWVGG-RVQLIALCEST-RDDVVSGIDSFTDPCSSLQVLIVSYETFR-----MHSSKFSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 264 k~~~~-~~~v~~~~~~~-r~~~~~~~~~~~~~~~~~~VvI~Sye~l~-----~~~~~~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
+|++. ...++.+.+.. ..... ......++|+|+||+++. .....+. ...|++||+||||++||..+
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~-~~~~~~vIvDEaH~~k~~~s 151 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLS------KNQLPKYDVVITTYETLRKARKKKDKEDLK-QIKWDRVIVDEAHRLKNKDS 151 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTT------SSSCCCSSEEEEEHHHHH--TSTHTTHHHH-TSEEEEEEETTGGGGTTTTS
T ss_pred ccccccccccccccccccccccc------ccccccceeeeccccccccccccccccccc-cccceeEEEecccccccccc
Confidence 99954 67788777766 22111 122356789999999998 4444444 35699999999999999988
Q ss_pred hhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHH
Q 043990 337 LTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397 (911)
Q Consensus 337 ~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~ 397 (911)
..++ |++.|+|+++.|+.|..+++...|.+.|..+ ..........+|..
T Consensus 152 ~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~------------~~~~~~~~~~~L~~ 219 (299)
T PF00176_consen 152 KRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP------------DKENSYENIERLRE 219 (299)
T ss_dssp HHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH------------HHTHHHHHHHHHHH
T ss_pred cccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh------------cccccccccccccc
Confidence 6654 9999999999999999999999999998665 33445566789999
Q ss_pred HhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHh---hhhhhHhhHHHHHHHHHHHhcChhhh
Q 043990 398 KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI---SEETKQSKILAYITALKKLCNHPKLI 474 (911)
Q Consensus 398 ~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~---~~~~~~~~~l~~l~~LrklcnhP~Ll 474 (911)
.+.++++||++.++...||++.+.++.|+|++.|+.+|+.+.......... ........++..+.+||++|+||.|+
T Consensus 220 ~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 220 LLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred ccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999998889999999999999999999999876543221111 12345567899999999999999874
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.7e-31 Score=331.03 Aligned_cols=436 Identities=17% Similarity=0.171 Sum_probs=254.0
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.+|+||++.+..+++ +++|++++||+|||++++.++..++.. ..+++|||||+ .|+.||..+
T Consensus 15 ~~r~yQ~~~~~~~l~-----------~n~lv~~ptG~GKT~~a~~~i~~~l~~------~~~~vLvl~Pt~~L~~Q~~~~ 77 (773)
T PRK13766 15 EARLYQQLLAATALK-----------KNTLVVLPTGLGKTAIALLVIAERLHK------KGGKVLILAPTKPLVEQHAEF 77 (773)
T ss_pred CccHHHHHHHHHHhc-----------CCeEEEcCCCccHHHHHHHHHHHHHHh------CCCeEEEEeCcHHHHHHHHHH
Confidence 568999998887753 267999999999999999988877632 24689999998 788999999
Q ss_pred HHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccchhc
Q 043990 262 IKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
+.++++. ...+..+.+.........+ +...+|+|+|++.+..+.. .......|++||+||||++.+..+...
T Consensus 78 ~~~~~~~~~~~v~~~~g~~~~~~r~~~------~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~ 151 (773)
T PRK13766 78 FRKFLNIPEEKIVVFTGEVSPEKRAEL------WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVY 151 (773)
T ss_pred HHHHhCCCCceEEEEeCCCCHHHHHHH------HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHH
Confidence 9998764 2355555554433221111 1245799999999865431 122245799999999999986543211
Q ss_pred c---------------------CCHHHHHHhhhhcCCCCCCCH----HHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHH
Q 043990 340 R---------------------NDLEEFFAMVNFTNPGILGDA----AYFRRYYETSIICGREPTATEEEKKLGIERSSE 394 (911)
Q Consensus 340 ~---------------------N~l~El~sLl~fl~P~~l~~~----~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~e 394 (911)
. .+...+..++.-+........ .....++..+-.... .........+
T Consensus 152 i~~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~--------~v~l~~~~~~ 223 (773)
T PRK13766 152 IAERYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWV--------RVELPEELKE 223 (773)
T ss_pred HHHHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEE--------EeCCcHHHHH
Confidence 0 111111111111110000000 000000000000000 0001123355
Q ss_pred HHHHhhHHhhhhcHHHHhcc-CCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhc----
Q 043990 395 LSAKVNQFILRRTNALLSNH-LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCN---- 469 (911)
Q Consensus 395 L~~~l~~~ilRRtk~~v~~~-LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~Lrklcn---- 469 (911)
+...+..++.+|.+...... .++....+....+...+..++..+...... ......++..+..+++...
T Consensus 224 i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~l~~~~~~l~~ 297 (773)
T PRK13766 224 IRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSE------GYEAISILAEAMKLRHAVELLET 297 (773)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777766665543222 212111111122222333333222110000 0000011111111111100
Q ss_pred -ChhhhH---hhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhh-cCCCeEEEEEc
Q 043990 470 -HPKLIY---DTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ-RTDDRIVLVSN 544 (911)
Q Consensus 470 -hP~Ll~---~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~-~~~~KVIIFSq 544 (911)
....+. ..+................+....... .. ..........+|+..|.++|..+.. .++.|+||||+
T Consensus 298 ~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~-~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~ 373 (773)
T PRK13766 298 QGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRK---AV-RKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQ 373 (773)
T ss_pred hCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHH---HH-HHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 000000 000000000000000000000000000 00 0000012347899999999988763 46789999999
Q ss_pred chHHHHHHHHHHHHcCCCEEEEeCC--------CCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCC
Q 043990 545 YTQTLDLFAQLCRERRYPYLRLDGT--------TSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDP 616 (911)
Q Consensus 545 ~~~~ld~L~~~L~~~gi~~~~LdGs--------ts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp 616 (911)
+..+++.|...|...|+++..++|. ++..+|.+++++|+++.. .+|++|.++++|+|++.+++||+|||
T Consensus 374 ~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~---~vLvaT~~~~eGldi~~~~~VI~yd~ 450 (773)
T PRK13766 374 YRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEF---NVLVSTSVAEEGLDIPSVDLVIFYEP 450 (773)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCC---CEEEECChhhcCCCcccCCEEEEeCC
Confidence 9999999999999999999999997 888999999999998654 48899999999999999999999999
Q ss_pred CCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 043990 617 DWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQ 665 (911)
Q Consensus 617 ~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~ 665 (911)
+||+..+.|++||++|.|+ +.||.|++.+|+||.+|....+|+..+
T Consensus 451 ~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 451 VPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 9999999998888888765 678999999999999998887777665
No 23
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.1e-27 Score=264.61 Aligned_cols=424 Identities=16% Similarity=0.209 Sum_probs=257.0
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.-|.||..-+.-.+. ++++++.+||||||++|+.+|...+... .+++|+++|+ .||.|-..-
T Consensus 15 e~R~YQ~~i~a~al~-----------~NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~kvlfLAPTKPLV~Qh~~~ 77 (542)
T COG1111 15 EPRLYQLNIAAKALF-----------KNTLVVLPTGLGKTFIAAMVIANRLRWF------GGKVLFLAPTKPLVLQHAEF 77 (542)
T ss_pred cHHHHHHHHHHHHhh-----------cCeEEEecCCccHHHHHHHHHHHHHHhc------CCeEEEecCCchHHHHHHHH
Confidence 346899987776643 4789999999999999999999777654 2479999998 899999999
Q ss_pred HHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccchhc
Q 043990 262 IKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
+.+.++. .-.+..+.|..+.+.+... +.+..|+++|++++.++.. .......+.+||+|||||.-+..+..+
T Consensus 78 ~~~v~~ip~~~i~~ltGev~p~~R~~~------w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~ 151 (542)
T COG1111 78 CRKVTGIPEDEIAALTGEVRPEEREEL------WAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVF 151 (542)
T ss_pred HHHHhCCChhheeeecCCCChHHHHHH------HhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHH
Confidence 9999885 3456666666555433221 2345799999999977653 222356788999999999876654221
Q ss_pred cCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHH----hhhhc--HHHHhc
Q 043990 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQF----ILRRT--NALLSN 413 (911)
Q Consensus 340 ~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~----ilRRt--k~~v~~ 413 (911)
- . ..+.+.-.+|...|..+..... . +.+.+++... +.-|| ..||..
T Consensus 152 V---a-----------------~~y~~~~k~~~ilgLTASPGs~-----~---ekI~eV~~nLgIe~vevrTE~d~DV~~ 203 (542)
T COG1111 152 V---A-----------------KEYLRSAKNPLILGLTASPGSD-----L---EKIQEVVENLGIEKVEVRTEEDPDVRP 203 (542)
T ss_pred H---H-----------------HHHHHhccCceEEEEecCCCCC-----H---HHHHHHHHhCCcceEEEecCCCccHHH
Confidence 0 0 0011111111111111110000 0 1111111111 11222 234555
Q ss_pred cCCCcEEEEEEecCCHHHHHHHHHH---HHhH-------------------H------HHHHhhhh--hhHh---hHHHH
Q 043990 414 HLPPKIIEVVCCKLTPLQSELYNHF---IHSK-------------------N------VKRAISEE--TKQS---KILAY 460 (911)
Q Consensus 414 ~LP~k~~~vv~~~ls~~Q~~lY~~~---l~~~-------------------~------~~~~~~~~--~~~~---~~l~~ 460 (911)
++-.+....+.++|++.-.++-+.+ +... . .+...+.. .... .+++.
T Consensus 204 Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~ 283 (542)
T COG1111 204 YVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAE 283 (542)
T ss_pred hhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 5666666666666666544433222 1000 0 00000000 0000 11111
Q ss_pred HHHHHHHhc----C---hhhhH-hhhhc-CCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHH
Q 043990 461 ITALKKLCN----H---PKLIY-DTIKS-GNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHL 531 (911)
Q Consensus 461 l~~Lrklcn----h---P~Ll~-~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l 531 (911)
+.++.++.. | |.+-+ ..+.. ...+.. -.....+....+.......... ....-..+||..+.++|.+.
T Consensus 284 ~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~s--k~a~~l~~d~~~~~al~~~~~~-~~~~v~HPKl~~l~eilke~ 360 (542)
T COG1111 284 AIKLAHALELLETQGIRPFYQYLEKLEEEATKGGS--KAAKSLLADPYFKRALRLLIRA-DESGVEHPKLEKLREILKEQ 360 (542)
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccch--HHHHHHhcChhhHHHHHHHHHh-ccccCCCccHHHHHHHHHHH
Confidence 111111100 0 00000 00000 000000 0000000000000000000000 00111368999999999987
Q ss_pred hh-cCCCeEEEEEcchHHHHHHHHHHHHcCCCEE-EEeC--------CCCHHHHHHHHHhhcCCCCCceEEEEecCCccc
Q 043990 532 RQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYL-RLDG--------TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGC 601 (911)
Q Consensus 532 ~~-~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~-~LdG--------sts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~ 601 (911)
.+ ..+.|||||++|+.+++.|..+|...|.... ++-| +|++++...+|++|+.|.- .+|++|.+|.+
T Consensus 361 ~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~---nVLVaTSVgEE 437 (542)
T COG1111 361 LEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEY---NVLVATSVGEE 437 (542)
T ss_pred HhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCc---eEEEEcccccc
Confidence 63 4668999999999999999999999998875 7777 5999999999999998654 49999999999
Q ss_pred ccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 043990 602 GLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK 666 (911)
Q Consensus 602 GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~ 666 (911)
|||++.++.||||||.-+|.+.+||+||++| ++.-.||-|+++||-||.-|....+|..-..
T Consensus 438 GLDIp~vDlVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~ 499 (542)
T COG1111 438 GLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMI 499 (542)
T ss_pred cCCCCcccEEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 5888899999999999999999888876543
No 24
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9.7e-30 Score=278.14 Aligned_cols=352 Identities=16% Similarity=0.188 Sum_probs=241.0
Q ss_pred ccccccCCCCCCceeecccCCCCCcccccchhcccCCCCCCCCCccccCCCCCCCCCCCCcccccChhhhccChHHHHHH
Q 043990 112 RKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREG 191 (911)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~v~p~l~~~LrphQ~eg 191 (911)
..+|..++++||+++++... +|..|+ |.|...
T Consensus 180 ~~sF~~mNLSRPlLka~~~l--------------Gy~~PT----------------------------------pIQ~a~ 211 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTL--------------GYKKPT----------------------------------PIQVAT 211 (691)
T ss_pred hhhHHhcccchHHHHHHHhc--------------CCCCCC----------------------------------chhhhc
Confidence 56899999999999999877 788888 889988
Q ss_pred HHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh----HHHHHHHHHHhC
Q 043990 192 VQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV----SNWEAEIKKWVG 267 (911)
Q Consensus 192 V~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl----~qW~~Ei~k~~~ 267 (911)
|.-.+ +...-.. |..+|+|||...+..++..+.+.|.+.+ +.++||+||+.-+ ++-.+.|..|+.
T Consensus 212 IPval------lgkDIca----~A~TGsGKTAAF~lPiLERLlYrPk~~~-~TRVLVL~PTRELaiQv~sV~~qlaqFt~ 280 (691)
T KOG0338|consen 212 IPVAL------LGKDICA----CAATGSGKTAAFALPILERLLYRPKKVA-ATRVLVLVPTRELAIQVHSVTKQLAQFTD 280 (691)
T ss_pred ccHHh------hcchhhh----eecccCCchhhhHHHHHHHHhcCcccCc-ceeEEEEeccHHHHHHHHHHHHHHHhhcc
Confidence 88653 2222222 3459999999888777777767666655 7899999999544 556667777876
Q ss_pred CCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc---ccccCCCCcEEEEcCccccCCccchhccCCHH
Q 043990 268 GRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS---KFSCSESCDLLICDEAHRLKNDQTLTNRNDLE 344 (911)
Q Consensus 268 ~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~---~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l~ 344 (911)
.. ..+.++|-+-......+. ..++|||+|++.|..|.. .|. ..++.++|+|||.|| |+
T Consensus 281 I~-~~L~vGGL~lk~QE~~LR------s~PDIVIATPGRlIDHlrNs~sf~-ldsiEVLvlDEADRM-----------Le 341 (691)
T KOG0338|consen 281 IT-VGLAVGGLDLKAQEAVLR------SRPDIVIATPGRLIDHLRNSPSFN-LDSIEVLVLDEADRM-----------LE 341 (691)
T ss_pred ce-eeeeecCccHHHHHHHHh------hCCCEEEecchhHHHHhccCCCcc-ccceeEEEechHHHH-----------HH
Confidence 42 334445544333333222 568999999999965543 343 456788999999999 77
Q ss_pred HHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEE
Q 043990 345 EFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVC 424 (911)
Q Consensus 345 El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~ 424 (911)
|.|. .++.++++-|.-+|... ...
T Consensus 342 egFa--------------------------------------------demnEii~lcpk~RQTm------------LFS 365 (691)
T KOG0338|consen 342 EGFA--------------------------------------------DEMNEIIRLCPKNRQTM------------LFS 365 (691)
T ss_pred HHHH--------------------------------------------HHHHHHHHhccccccce------------eeh
Confidence 7666 56777776554444322 233
Q ss_pred ecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCC
Q 043990 425 CKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRS 504 (911)
Q Consensus 425 ~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 504 (911)
..||..-..+...-++.+..............+.+.+.+.|.
T Consensus 366 ATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~-------------------------------------- 407 (691)
T KOG0338|consen 366 ATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRP-------------------------------------- 407 (691)
T ss_pred hhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecc--------------------------------------
Confidence 345554444433211110000000000000000111111100
Q ss_pred CCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcC
Q 043990 505 GSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFND 584 (911)
Q Consensus 505 ~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~ 584 (911)
-...-+-..|..|+.... .+++|||.+.++.++.+..+|...|+++..|+|+.++.+|...++.|++
T Consensus 408 ----------~re~dRea~l~~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~ 474 (691)
T KOG0338|consen 408 ----------KREGDREAMLASLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK 474 (691)
T ss_pred ----------ccccccHHHHHHHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh
Confidence 001223446666776654 4799999999999999999999999999999999999999999999998
Q ss_pred CCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHH
Q 043990 585 PSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVY 655 (911)
Q Consensus 585 ~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~ 655 (911)
...+ +||+|+++++|||+.+..+||+|+.|-+...|.+|+||..|.|..- +-+.|+..+ |-+|+
T Consensus 475 ~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG--rsVtlvgE~--dRkll 538 (691)
T KOG0338|consen 475 EEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG--RSVTLVGES--DRKLL 538 (691)
T ss_pred ccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc--ceEEEeccc--cHHHH
Confidence 6655 9999999999999999999999999999999999999999999652 233455555 44443
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=1.3e-26 Score=267.90 Aligned_cols=366 Identities=17% Similarity=0.195 Sum_probs=254.4
Q ss_pred hhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHH
Q 043990 179 LLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSN 257 (911)
Q Consensus 179 ~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~q 257 (911)
.....|||||.+++.-+.... .. .+.+|+..++|.|||+.++.++..+ ..++|||||+ .|+.|
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~----~~--~~~gvivlpTGaGKT~va~~~~~~~----------~~~~Lvlv~~~~L~~Q 95 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNR----RT--ERRGVIVLPTGAGKTVVAAEAIAEL----------KRSTLVLVPTKELLDQ 95 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhc----cc--CCceEEEeCCCCCHHHHHHHHHHHh----------cCCEEEEECcHHHHHH
Confidence 345579999999999887632 22 4556899999999999999999876 2349999998 67899
Q ss_pred HHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCC-ccEEEEehHHHHhh--ccccccCCCCcEEEEcCccccCCc
Q 043990 258 WEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS-LQVLIVSYETFRMH--SSKFSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 258 W~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~-~~VvI~Sye~l~~~--~~~~~~~~~~~lVIlDEAH~lKN~ 334 (911)
|.+.+.+++.....+..+++..+. .. ..|.|+||+++.+. ...+. ...|++||+||+||+.++
T Consensus 96 w~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~i~vat~qtl~~~~~l~~~~-~~~~~liI~DE~Hh~~a~ 161 (442)
T COG1061 96 WAEALKKFLLLNDEIGIYGGGEKE-------------LEPAKVTVATVQTLARRQLLDEFL-GNEFGLIIFDEVHHLPAP 161 (442)
T ss_pred HHHHHHHhcCCccccceecCceec-------------cCCCcEEEEEhHHHhhhhhhhhhc-ccccCEEEEEccccCCcH
Confidence 999999988753222233332221 01 35999999999764 23333 347999999999999765
Q ss_pred cchhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHh--
Q 043990 335 QTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLS-- 412 (911)
Q Consensus 335 ~s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~-- 412 (911)
..+...+.+...+. .+|= .++.. ..+......+...+.+.++.....++.
T Consensus 162 ~~~~~~~~~~~~~~--------~LGL------------------TATp~--R~D~~~~~~l~~~~g~~vy~~~~~~li~~ 213 (442)
T COG1061 162 SYRRILELLSAAYP--------RLGL------------------TATPE--REDGGRIGDLFDLIGPIVYEVSLKELIDE 213 (442)
T ss_pred HHHHHHHhhhcccc--------eeee------------------ccCce--eecCCchhHHHHhcCCeEeecCHHHHHhC
Confidence 43321111111111 1110 01110 111123345666666666666555443
Q ss_pred ccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhh
Q 043990 413 NHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492 (911)
Q Consensus 413 ~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~ 492 (911)
..|.|.....+.+.++......|............... ........+.+
T Consensus 214 g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~------------------------- 262 (442)
T COG1061 214 GYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG------TLRAENEARRI------------------------- 262 (442)
T ss_pred CCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh------hhhHHHHHHHH-------------------------
Confidence 46889999999999999999988765332111100000 00000000000
Q ss_pred hcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCH
Q 043990 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSI 572 (911)
Q Consensus 493 ~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~ 572 (911)
......|+..+..++.... .+.+++||+.++.++..+...|...|+ +..++|.++.
T Consensus 263 ---------------------~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~ 318 (442)
T COG1061 263 ---------------------AIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPK 318 (442)
T ss_pred ---------------------hhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCH
Confidence 0112566677777776543 378999999999999999999999888 8899999999
Q ss_pred HHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhh-cCCccc--EEEEEEEeCCC
Q 043990 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWR-DGQKKR--VFIYRFLSTGT 649 (911)
Q Consensus 573 ~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~R-iGQkk~--V~VyrLi~~gT 649 (911)
.+|.+++++|+.+. +.+|++++++.+|+|++.|+.+|+..|.-++..+.|++||+.| ...++. ++.|-++..++
T Consensus 319 ~eR~~il~~fr~g~---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~ 395 (442)
T COG1061 319 EEREAILERFRTGG---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDL 395 (442)
T ss_pred HHHHHHHHHHHcCC---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcc
Confidence 99999999999865 4599999999999999999999999999999999999999999 444554 77888888899
Q ss_pred HHHHHHHHHHH
Q 043990 650 IEEKVYQRQMS 660 (911)
Q Consensus 650 IEEkI~~rq~~ 660 (911)
.++.+......
T Consensus 396 ~~~~~~~~~~~ 406 (442)
T COG1061 396 GEEDIARRRRL 406 (442)
T ss_pred cccchhhhhhh
Confidence 88887766544
No 26
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.95 E-value=7.8e-28 Score=286.68 Aligned_cols=243 Identities=17% Similarity=0.245 Sum_probs=173.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcC-----------CCCCCCCceEEEEeCchhhHHHHHHHHHHhCCCeEEEEecCCc
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQG-----------FDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCEST 279 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g-----------~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~ 279 (911)
+++||+||+|||...+++...-+... ....-..+.+|||||.+++.||-.||.++++..++++.|-|-.
T Consensus 377 ~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~Gir 456 (1394)
T KOG0298|consen 377 VQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYFGIR 456 (1394)
T ss_pred eeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEechh
Confidence 49999999999999888776432111 1112236789999999999999999999999877888877654
Q ss_pred chhhhccCcccCCCCCCccEEEEehHHHHhhcccc---------------------ccCCCCcEEEEcCccccCCccchh
Q 043990 280 RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKF---------------------SCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 280 r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~---------------------~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
+.-.... .....||||+|||+.++.....- .....|.+||+|||+.+....+..
T Consensus 457 k~~~~~~-----~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~ 531 (1394)
T KOG0298|consen 457 KTFWLSP-----FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAA 531 (1394)
T ss_pred hhcccCc-----hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHH
Confidence 4322222 12357899999999997443210 013458899999999999877765
Q ss_pred cc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHh
Q 043990 339 NR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKV 399 (911)
Q Consensus 339 ~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l 399 (911)
++ + +.+||.|+.||.-.+|+....|.+....++..- .....+..++
T Consensus 532 a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--------------a~~~~~~dl~ 596 (1394)
T KOG0298|consen 532 AEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--------------AKCEPLLDLF 596 (1394)
T ss_pred HHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--------------hhhhhHHHHH
Confidence 54 5 999999999999999999999988876654211 2234577788
Q ss_pred hHHhhhhcHHHHhcc--CCCcEEEEEEecCCHHHHHHHHHHHH----hH-----HHHHHhh---------hhhhHhhHHH
Q 043990 400 NQFILRRTNALLSNH--LPPKIIEVVCCKLTPLQSELYNHFIH----SK-----NVKRAIS---------EETKQSKILA 459 (911)
Q Consensus 400 ~~~ilRRtk~~v~~~--LP~k~~~vv~~~ls~~Q~~lY~~~l~----~~-----~~~~~~~---------~~~~~~~~l~ 459 (911)
...+-|+.+..+..+ +||..+.+.+..+++.+..+|+..-. .. ..+.... .......++.
T Consensus 597 ~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~ 676 (1394)
T KOG0298|consen 597 KQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILK 676 (1394)
T ss_pred HhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHH
Confidence 888889988888764 78888888888888888888865311 10 0110000 0122346788
Q ss_pred HHHHHHHHhcChhh
Q 043990 460 YITALKKLCNHPKL 473 (911)
Q Consensus 460 ~l~~LrklcnhP~L 473 (911)
.+.+||++|+||..
T Consensus 677 ~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 677 WLLRLRQACCHPLV 690 (1394)
T ss_pred HHHHHHHhhccccc
Confidence 89999999999864
No 27
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=8e-26 Score=266.14 Aligned_cols=338 Identities=13% Similarity=0.131 Sum_probs=214.6
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..|||||.++|..++. .+.+|+..+||+|||++++.++..++..+ ..++|||||+ .|+.||.+
T Consensus 113 ~~~r~~Q~~av~~~l~----------~~~~il~apTGsGKT~i~~~l~~~~~~~~------~~~vLilvpt~eL~~Q~~~ 176 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----------NNRRLLNLPTSAGKSLIQYLLSRYYLENY------EGKVLIIVPTTSLVTQMID 176 (501)
T ss_pred CCCCHHHHHHHHHHHh----------cCceEEEeCCCCCHHHHHHHHHHHHHhcC------CCeEEEEECcHHHHHHHHH
Confidence 5899999999987753 23469999999999998877665544432 2389999998 88899999
Q ss_pred HHHHHhCCC-eEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhc
Q 043990 261 EIKKWVGGR-VQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 261 Ei~k~~~~~-~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
++.+|.... ..+..+.++.... ...+|+|+|++++......+ ...+++||+||||++....
T Consensus 177 ~l~~~~~~~~~~~~~i~~g~~~~------------~~~~I~VaT~qsl~~~~~~~--~~~~~~iIvDEaH~~~~~~---- 238 (501)
T PHA02558 177 DFVDYRLFPREAMHKIYSGTAKD------------TDAPIVVSTWQSAVKQPKEW--FDQFGMVIVDECHLFTGKS---- 238 (501)
T ss_pred HHHHhccccccceeEEecCcccC------------CCCCEEEeeHHHHhhchhhh--ccccCEEEEEchhcccchh----
Confidence 999986421 2222222222110 23579999999986544333 2578999999999996532
Q ss_pred cCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhc--cCCC
Q 043990 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSN--HLPP 417 (911)
Q Consensus 340 ~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~--~LP~ 417 (911)
+..+.. -+.+.. | ..|- .++... +......+...+.+...+-+..++.+ .+.+
T Consensus 239 ---~~~il~---~~~~~~----------~----~lGL--TATp~~---~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~ 293 (501)
T PHA02558 239 ---LTSIIT---KLDNCK----------F----KFGL--TGSLRD---GKANILQYVGLFGDIFKPVTTSQLMEEGQVTD 293 (501)
T ss_pred ---HHHHHH---hhhccc----------e----EEEE--eccCCC---ccccHHHHHHhhCCceEEecHHHHHhCCCcCC
Confidence 222221 110000 0 0000 000000 00001112223333332222222221 2333
Q ss_pred cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 418 KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 418 k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
.....+.+..++.....+.. ...-. .+..+++
T Consensus 294 ~~~~~v~~~~~~~~~~~~~~-----------------~~~~~---~~~~l~~---------------------------- 325 (501)
T PHA02558 294 LKINSIFLRYPDEDRVKLKG-----------------EDYQE---EIKYITS---------------------------- 325 (501)
T ss_pred ceEEEEeccCCHHHhhhhcc-----------------cchHH---HHHHHhc----------------------------
Confidence 33334444444322111000 00000 0111111
Q ss_pred ccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Q 043990 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577 (911)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~ 577 (911)
...+...+..++..+.. .+.+++||+..+++++.|...|...|+++..++|+++.++|.+
T Consensus 326 -------------------~~~Rn~~I~~~~~~~~~-~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~ 385 (501)
T PHA02558 326 -------------------HTKRNKWIANLALKLAK-KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNE 385 (501)
T ss_pred -------------------cHHHHHHHHHHHHHHHh-cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 13344555666665554 5788999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcc-cEEEEEEEeCC
Q 043990 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK-RVFIYRFLSTG 648 (911)
Q Consensus 578 iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk-~V~VyrLi~~g 648 (911)
+++.|+++. ..+++.|++..++|+|++.+++||+++|..+...+.|++||++|.|..| .|.||.++-.-
T Consensus 386 i~~~~~~~~--~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 386 MKKIAEGGK--GIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred HHHHHhCCC--CeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 999998743 3355555699999999999999999999999999999999999998765 68999998643
No 28
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=1.8e-24 Score=256.68 Aligned_cols=327 Identities=17% Similarity=0.216 Sum_probs=211.4
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHH-HHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali-~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
.+.|+|.+++..++. .+.+|+..+||+|||++.+..+ ..+..+..........+|||||+ .|+.||.+
T Consensus 152 ~pt~iQ~~aip~~l~----------G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~ 221 (545)
T PTZ00110 152 EPTPIQVQGWPIALS----------GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIRE 221 (545)
T ss_pred CCCHHHHHHHHHHhc----------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHH
Confidence 467999999988753 3577999999999999876443 34333321111112368999998 67799999
Q ss_pred HHHHHhCC-CeEEEEecCCc-chhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccch
Q 043990 261 EIKKWVGG-RVQLIALCEST-RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~-r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
++.++... .+.+..++++. .......+. ...+|+|+|++.+..... .......+.+||+||||++-...
T Consensus 222 ~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~------~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~g-- 293 (545)
T PTZ00110 222 QCNKFGASSKIRNTVAYGGVPKRGQIYALR------RGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMG-- 293 (545)
T ss_pred HHHHHhcccCccEEEEeCCCCHHHHHHHHH------cCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcc--
Confidence 99998753 34444444332 222222221 246899999998854332 12224568899999999973211
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPP 417 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~ 417 (911)
|. ..+..++. .+++
T Consensus 294 --------------------------f~---------------------------~~i~~il~-------------~~~~ 307 (545)
T PTZ00110 294 --------------------------FE---------------------------PQIRKIVS-------------QIRP 307 (545)
T ss_pred --------------------------hH---------------------------HHHHHHHH-------------hCCC
Confidence 10 11111211 1222
Q ss_pred -cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC
Q 043990 418 -KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP 496 (911)
Q Consensus 418 -k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~ 496 (911)
.........+......+.+.++. ..|..+.. +.......... .
T Consensus 308 ~~q~l~~SAT~p~~v~~l~~~l~~----------------------------~~~v~i~v----g~~~l~~~~~i----~ 351 (545)
T PTZ00110 308 DRQTLMWSATWPKEVQSLARDLCK----------------------------EEPVHVNV----GSLDLTACHNI----K 351 (545)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHhc----------------------------cCCEEEEE----CCCccccCCCe----e
Confidence 22223333333322222211110 01110000 00000000000 0
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~ 576 (911)
.. -.......|...|..+|..+.. .+.++|||++....++.|...|...|+++..++|.+++.+|.
T Consensus 352 q~-------------~~~~~~~~k~~~L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~ 417 (545)
T PTZ00110 352 QE-------------VFVVEEHEKRGKLKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERT 417 (545)
T ss_pred EE-------------EEEEechhHHHHHHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHH
Confidence 00 0112235688888888887764 578999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
.+++.|+++... +|++|.++++|||++.+++||+||+++++..|.||+||++|.|.+-.+ |.|++.+
T Consensus 418 ~il~~F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 418 WVLNEFKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred HHHHHHhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 999999986554 899999999999999999999999999999999999999999987655 4455554
No 29
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=7e-25 Score=248.93 Aligned_cols=321 Identities=17% Similarity=0.238 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHh--cCCCCCCCCceEEEEeCch-hhHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLC--QGFDGKPMVKKAIIVTPTS-LVSNWEAEI 262 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~--~g~~~~p~~~~~LIV~P~s-Ll~qW~~Ei 262 (911)
|.|..+...+++ .+.+|....+|+|||+.-+.-+...+. ++...++....+||++|+. |..|-+.++
T Consensus 116 pIQaq~wp~~l~----------GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~ 185 (519)
T KOG0331|consen 116 PIQAQGWPIALS----------GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEA 185 (519)
T ss_pred hhhhcccceecc----------CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHH
Confidence 889988777643 367789999999999986654444333 3444444455799999995 557778888
Q ss_pred HHHhCC-Ce-EEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcccc-ccCCCCcEEEEcCccccCCccchhc
Q 043990 263 KKWVGG-RV-QLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKF-SCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 263 ~k~~~~-~~-~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~-~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
.++... .+ .++.++|.........+. ...+|+|+|+..+..+...- .....+.++|+|||.+|-...
T Consensus 186 ~~~~~~~~~~~~cvyGG~~~~~Q~~~l~------~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG---- 255 (519)
T KOG0331|consen 186 REFGKSLRLRSTCVYGGAPKGPQLRDLE------RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG---- 255 (519)
T ss_pred HHHcCCCCccEEEEeCCCCccHHHHHHh------cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc----
Confidence 888765 33 445555555554444433 34689999999996554321 123578899999999983211
Q ss_pred cCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc-
Q 043990 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK- 418 (911)
Q Consensus 340 ~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k- 418 (911)
|. ..+..++. .+|+.
T Consensus 256 ------------------------Fe---------------------------~qI~~Il~-------------~i~~~~ 271 (519)
T KOG0331|consen 256 ------------------------FE---------------------------PQIRKILS-------------QIPRPD 271 (519)
T ss_pred ------------------------cH---------------------------HHHHHHHH-------------hcCCCc
Confidence 11 12223332 34322
Q ss_pred -EEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 419 -IIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 419 -~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
.........+...+.+-..|+.......... ...+.+-...+|+.
T Consensus 272 rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~-----~~~~~a~~~i~qiv----------------------------- 317 (519)
T KOG0331|consen 272 RQTLMFSATWPKEVRQLAEDFLNNPIQINVGN-----KKELKANHNIRQIV----------------------------- 317 (519)
T ss_pred ccEEEEeeeccHHHHHHHHHHhcCceEEEecc-----hhhhhhhcchhhhh-----------------------------
Confidence 2334445666777777666654211100000 00111111111111
Q ss_pred ccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Q 043990 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577 (911)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~ 577 (911)
.......|...|..+|..+....+.|+||||+++.+.+.|+..|+..++++..|||..++.+|..
T Consensus 318 ---------------e~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 318 ---------------EVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred ---------------hhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 01123678889999999887556779999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 578 iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+++.|++++.. +|++|+++++|||+.+.++||+||+|-|...|.||+||.+|.|++-..+.+
T Consensus 383 ~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tf 444 (519)
T KOG0331|consen 383 VLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITF 444 (519)
T ss_pred HHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEE
Confidence 99999997655 999999999999999999999999999999999999999999888665543
No 30
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1e-23 Score=251.22 Aligned_cols=317 Identities=18% Similarity=0.221 Sum_probs=206.3
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCC---CCCCCCceEEEEeCc-hhhHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGF---DGKPMVKKAIIVTPT-SLVSNWE 259 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~---~~~p~~~~~LIV~P~-sLl~qW~ 259 (911)
+.|+|.+++..+++ .+.+|+..++|+|||+..+..+...+...+ ...+...++|||+|+ .|+.|+.
T Consensus 32 ptpiQ~~~ip~~l~----------G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~ 101 (572)
T PRK04537 32 CTPIQALTLPVALP----------GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIH 101 (572)
T ss_pred CCHHHHHHHHHHhC----------CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHH
Confidence 44999999998863 356899999999999998776655443211 111123579999998 6779999
Q ss_pred HHHHHHhCC-CeEEEEecCCcchhh-hccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCCcc
Q 043990 260 AEIKKWVGG-RVQLIALCESTRDDV-VSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 260 ~Ei~k~~~~-~~~v~~~~~~~r~~~-~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN~~ 335 (911)
+++.+|... .+.+..++++..... ...+. ..++|+|+|++.|...... +.....+++|||||||++-...
T Consensus 102 ~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~------~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~g 175 (572)
T PRK04537 102 KDAVKFGADLGLRFALVYGGVDYDKQRELLQ------QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLG 175 (572)
T ss_pred HHHHHHhccCCceEEEEECCCCHHHHHHHHh------CCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcc
Confidence 999988754 455655555443221 11111 3468999999988654322 2224567899999999872210
Q ss_pred chhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccC
Q 043990 336 TLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHL 415 (911)
Q Consensus 336 s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~L 415 (911)
|. ..+..++ + .+
T Consensus 176 ----------------------------f~---------------------------~~i~~il-----~--------~l 187 (572)
T PRK04537 176 ----------------------------FI---------------------------KDIRFLL-----R--------RM 187 (572)
T ss_pred ----------------------------hH---------------------------HHHHHHH-----H--------hc
Confidence 00 0111111 1 22
Q ss_pred CC---cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhh
Q 043990 416 PP---KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492 (911)
Q Consensus 416 P~---k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~ 492 (911)
|. .....+...++..-..+... ..+.|..+....... ......
T Consensus 188 p~~~~~q~ll~SATl~~~v~~l~~~-----------------------------~l~~p~~i~v~~~~~--~~~~i~--- 233 (572)
T PRK04537 188 PERGTRQTLLFSATLSHRVLELAYE-----------------------------HMNEPEKLVVETETI--TAARVR--- 233 (572)
T ss_pred ccccCceEEEEeCCccHHHHHHHHH-----------------------------HhcCCcEEEeccccc--ccccee---
Confidence 22 12222233333321111111 112221110000000 000000
Q ss_pred hcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCH
Q 043990 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSI 572 (911)
Q Consensus 493 ~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~ 572 (911)
..+ .......|+..|..++.. ..+.++|||++....++.|.+.|...|+.+..++|.++.
T Consensus 234 ----q~~-------------~~~~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~ 293 (572)
T PRK04537 234 ----QRI-------------YFPADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQ 293 (572)
T ss_pred ----EEE-------------EecCHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 000 001124566666666653 357899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEE
Q 043990 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 573 ~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~V 641 (911)
.+|..+++.|+++.. .+|++|+++++|||+.++++||+||.+|++..|.|++||++|.|.+-.+.+
T Consensus 294 ~eR~~il~~Fr~G~~---~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 294 KKRESLLNRFQKGQL---EILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HHHHHHHHHHHcCCC---eEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 999999999998654 499999999999999999999999999999999999999999998765544
No 31
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1e-23 Score=244.07 Aligned_cols=320 Identities=16% Similarity=0.179 Sum_probs=206.2
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCC---CCCCCceEEEEeCc-hhhHHHHH
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFD---GKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~---~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
.|+|.+++..++. .+.+|+..++|+|||+..+..+...+...+. ......++|||+|+ .|+.||.+
T Consensus 32 t~iQ~~aip~il~----------g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~ 101 (423)
T PRK04837 32 TPIQALALPLTLA----------GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHA 101 (423)
T ss_pred CHHHHHHHHHHhC----------CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHH
Confidence 3999999998753 3567999999999999887666554433211 11123479999998 67799998
Q ss_pred HHHHHhCC-CeEEEEecCCcch-hhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccch
Q 043990 261 EIKKWVGG-RVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~r~-~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
++.++... .+.+..+.++... .....+. ..++|+|+|++.+..... .......+.+||+||||++-...
T Consensus 102 ~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~------~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~-- 173 (423)
T PRK04837 102 DAEPLAQATGLKLGLAYGGDGYDKQLKVLE------SGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLG-- 173 (423)
T ss_pred HHHHHhccCCceEEEEECCCCHHHHHHHhc------CCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcc--
Confidence 88887653 3555555544332 2222221 346899999998854432 22234578999999999873211
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPP 417 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~ 417 (911)
|. ..+..++. .+|.
T Consensus 174 --------------------------f~---------------------------~~i~~i~~-------------~~~~ 187 (423)
T PRK04837 174 --------------------------FI---------------------------KDIRWLFR-------------RMPP 187 (423)
T ss_pred --------------------------cH---------------------------HHHHHHHH-------------hCCC
Confidence 00 01111111 1222
Q ss_pred ---cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhc
Q 043990 418 ---KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRF 494 (911)
Q Consensus 418 ---k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~ 494 (911)
.........++..-..+. ....+.|..+... ........+
T Consensus 188 ~~~~~~~l~SAT~~~~~~~~~-----------------------------~~~~~~p~~i~v~--~~~~~~~~i------ 230 (423)
T PRK04837 188 ANQRLNMLFSATLSYRVRELA-----------------------------FEHMNNPEYVEVE--PEQKTGHRI------ 230 (423)
T ss_pred ccceeEEEEeccCCHHHHHHH-----------------------------HHHCCCCEEEEEc--CCCcCCCce------
Confidence 111122222222111111 0111222211100 000000000
Q ss_pred CCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Q 043990 495 FPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISK 574 (911)
Q Consensus 495 ~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~ 574 (911)
.... .......|+..|..++... ...++|||++....++.+...|...|+++..++|.++.++
T Consensus 231 -~~~~-------------~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~ 293 (423)
T PRK04837 231 -KEEL-------------FYPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKK 293 (423)
T ss_pred -eEEE-------------EeCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhH
Confidence 0000 0112246777777777642 4689999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeC
Q 043990 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLST 647 (911)
Q Consensus 575 R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~ 647 (911)
|.++++.|+++... +|++|+++++|||++++++||+||+|+++..|.|++||++|.|+.-.+ +-|++.
T Consensus 294 R~~~l~~F~~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 294 RLRILEEFTRGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred HHHHHHHHHcCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 99999999986554 999999999999999999999999999999999999999999977554 344543
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=1.7e-24 Score=252.66 Aligned_cols=317 Identities=15% Similarity=0.200 Sum_probs=203.3
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCC--CCCCCceEEEEeCc-hhhHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFD--GKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~--~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
+.|+|.+++..+++ .+.+|+..+||+|||+..+..+...+..... ......++|||||+ .|+.||.+
T Consensus 24 pt~iQ~~ai~~il~----------g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~ 93 (456)
T PRK10590 24 PTPIQQQAIPAVLE----------GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGE 93 (456)
T ss_pred CCHHHHHHHHHHhC----------CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHH
Confidence 45999999998753 2568999999999999977766555443211 11112369999998 67799999
Q ss_pred HHHHHhCC-CeEEEEecCCcch-hhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccch
Q 043990 261 EIKKWVGG-RVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~r~-~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
++.++... .+.+..+.++... .....+ ...++|+|+|++.+..... .......+++|||||||++-...
T Consensus 94 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~-- 165 (456)
T PRK10590 94 NVRDYSKYLNIRSLVVFGGVSINPQMMKL------RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMG-- 165 (456)
T ss_pred HHHHHhccCCCEEEEEECCcCHHHHHHHH------cCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccc--
Confidence 99988653 3455555444322 111111 1357899999998854332 12224578999999999873211
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPP 417 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~ 417 (911)
|. ..+..++. .+|.
T Consensus 166 --------------------------~~---------------------------~~i~~il~-------------~l~~ 179 (456)
T PRK10590 166 --------------------------FI---------------------------HDIRRVLA-------------KLPA 179 (456)
T ss_pred --------------------------cH---------------------------HHHHHHHH-------------hCCc
Confidence 00 01111111 2333
Q ss_pred cEEE-EEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC
Q 043990 418 KIIE-VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP 496 (911)
Q Consensus 418 k~~~-vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~ 496 (911)
.... .....+++.-..+... +...|..+... ........+...
T Consensus 180 ~~q~l~~SAT~~~~~~~l~~~-----------------------------~~~~~~~i~~~--~~~~~~~~i~~~----- 223 (456)
T PRK10590 180 KRQNLLFSATFSDDIKALAEK-----------------------------LLHNPLEIEVA--RRNTASEQVTQH----- 223 (456)
T ss_pred cCeEEEEeCCCcHHHHHHHHH-----------------------------HcCCCeEEEEe--cccccccceeEE-----
Confidence 3221 2222232211111111 11111111000 000000000000
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~ 576 (911)
........|..+|..++.. ....++|||++....++.+...|...|+.+..++|.++..+|.
T Consensus 224 ---------------~~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~ 285 (456)
T PRK10590 224 ---------------VHFVDKKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGART 285 (456)
T ss_pred ---------------EEEcCHHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Confidence 0011123455555555543 2457999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEE
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~V 641 (911)
++++.|+++... +|++|+++++|||++++++||+||++.++..|.|++||++|.|.+..+.+
T Consensus 286 ~~l~~F~~g~~~---iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 286 RALADFKSGDIR---VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred HHHHHHHcCCCc---EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 999999986544 89999999999999999999999999999999999999999998765544
No 33
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.93 E-value=1.9e-23 Score=242.64 Aligned_cols=321 Identities=15% Similarity=0.174 Sum_probs=204.5
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEI 262 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei 262 (911)
++|+|.+++..+++ .+.+|+..++|+|||+.++..+...+...+.......++||++|+ .|+.||.+.+
T Consensus 24 p~~iQ~~ai~~~~~----------g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~ 93 (434)
T PRK11192 24 PTAIQAEAIPPALD----------GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQA 93 (434)
T ss_pred CCHHHHHHHHHHhC----------CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHH
Confidence 45999999998863 246799999999999997766655443322222223579999998 5778888888
Q ss_pred HHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccchhcc
Q 043990 263 KKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTLTNR 340 (911)
Q Consensus 263 ~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~~~~ 340 (911)
..|... .+.+..+.++......... + ...++|+|+|++.+...... ......+++||+||||++-...
T Consensus 94 ~~l~~~~~~~v~~~~gg~~~~~~~~~--l---~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~----- 163 (434)
T PRK11192 94 RELAKHTHLDIATITGGVAYMNHAEV--F---SENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMG----- 163 (434)
T ss_pred HHHHccCCcEEEEEECCCCHHHHHHH--h---cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCC-----
Confidence 887653 4566666655432211110 0 13568999999988654321 1124568899999999973311
Q ss_pred CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc-E
Q 043990 341 NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK-I 419 (911)
Q Consensus 341 N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k-~ 419 (911)
|. ..+..+.. .++.. .
T Consensus 164 -----------------------~~---------------------------~~~~~i~~-------------~~~~~~q 180 (434)
T PRK11192 164 -----------------------FA---------------------------QDIETIAA-------------ETRWRKQ 180 (434)
T ss_pred -----------------------cH---------------------------HHHHHHHH-------------hCccccE
Confidence 00 00111110 11111 1
Q ss_pred EEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCccc
Q 043990 420 IEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEM 499 (911)
Q Consensus 420 ~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (911)
.......++.. ....+ .+.+.++|..+... ............ +
T Consensus 181 ~~~~SAT~~~~---~~~~~-------------------------~~~~~~~~~~i~~~--~~~~~~~~i~~~---~---- 223 (434)
T PRK11192 181 TLLFSATLEGD---AVQDF-------------------------AERLLNDPVEVEAE--PSRRERKKIHQW---Y---- 223 (434)
T ss_pred EEEEEeecCHH---HHHHH-------------------------HHHHccCCEEEEec--CCcccccCceEE---E----
Confidence 11222222210 00000 01111222211100 000000000000 0
Q ss_pred ccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Q 043990 500 FSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLV 579 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv 579 (911)
. .......|..+|..++.. ....++|||++....++.+...|...|+.+..++|.++..+|..++
T Consensus 224 ~------------~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l 288 (434)
T PRK11192 224 Y------------RADDLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAI 288 (434)
T ss_pred E------------EeCCHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHH
Confidence 0 000124567777776653 2468999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 580 NHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 580 ~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
++|+++... +|++|+++++|||++++++||+||+++++..|.||+||++|.|.+..+.++
T Consensus 289 ~~f~~G~~~---vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 289 KRLTDGRVN---VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred HHHhCCCCc---EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 999986554 999999999999999999999999999999999999999999987665554
No 34
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=4.9e-24 Score=250.17 Aligned_cols=319 Identities=17% Similarity=0.209 Sum_probs=204.9
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCC---CCCceEEEEeCc-hhhHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGK---PMVKKAIIVTPT-SLVSNW 258 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~---p~~~~~LIV~P~-sLl~qW 258 (911)
.++|||.+++..++. .+.+|++-.+|+|||+..+..+...+...+... ....++|||+|+ .|+.||
T Consensus 109 ~~~~iQ~~ai~~~~~----------G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~ 178 (475)
T PRK01297 109 YCTPIQAQVLGYTLA----------GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQI 178 (475)
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHH
Confidence 588999999998753 256789999999999987665554443332111 012479999998 677899
Q ss_pred HHHHHHHhCC-CeEEEEecCCcc-hhhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCcc
Q 043990 259 EAEIKKWVGG-RVQLIALCESTR-DDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 259 ~~Ei~k~~~~-~~~v~~~~~~~r-~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~ 335 (911)
.+.+..+... .+.+..+.++.. ......+. ...++|+|+|++++...... ......+++||+||||++.+..
T Consensus 179 ~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~-----~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~ 253 (475)
T PRK01297 179 AKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE-----ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG 253 (475)
T ss_pred HHHHHHhhccCCCEEEEEEccCChHHHHHHHh-----CCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcc
Confidence 9988887643 355555554422 22222111 13468999999998543321 1123567899999999873311
Q ss_pred chhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccC
Q 043990 336 TLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHL 415 (911)
Q Consensus 336 s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~L 415 (911)
|. ..+..++. .+
T Consensus 254 ----------------------------~~---------------------------~~l~~i~~-------------~~ 265 (475)
T PRK01297 254 ----------------------------FI---------------------------PQVRQIIR-------------QT 265 (475)
T ss_pred ----------------------------cH---------------------------HHHHHHHH-------------hC
Confidence 00 11111111 12
Q ss_pred CCc-EEEEEEecCC--HHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhh
Q 043990 416 PPK-IIEVVCCKLT--PLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492 (911)
Q Consensus 416 P~k-~~~vv~~~ls--~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~ 492 (911)
|.+ ...++.+.-| ..-..+ .++...+|..+..... .........
T Consensus 266 ~~~~~~q~i~~SAT~~~~~~~~-----------------------------~~~~~~~~~~v~~~~~--~~~~~~~~~-- 312 (475)
T PRK01297 266 PRKEERQTLLFSATFTDDVMNL-----------------------------AKQWTTDPAIVEIEPE--NVASDTVEQ-- 312 (475)
T ss_pred CCCCCceEEEEEeecCHHHHHH-----------------------------HHHhccCCEEEEeccC--cCCCCcccE--
Confidence 211 1122332222 111111 1111222222110000 000000000
Q ss_pred hcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCH
Q 043990 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSI 572 (911)
Q Consensus 493 ~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~ 572 (911)
. ......+.|...|..++.. ....|+|||++....++.+...|...|+.+..++|.++.
T Consensus 313 ------~------------~~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~ 371 (475)
T PRK01297 313 ------H------------VYAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQ 371 (475)
T ss_pred ------E------------EEEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCH
Confidence 0 0011235677777777654 245799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEE
Q 043990 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 573 ~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~V 641 (911)
.+|.++++.|+++... +|++|+++++|||+.++++||+|++++++..|.|++||++|.|+.-.+++
T Consensus 372 ~~R~~~~~~Fr~G~~~---vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~ 437 (475)
T PRK01297 372 HKRIKTLEGFREGKIR---VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSIS 437 (475)
T ss_pred HHHHHHHHHHhCCCCc---EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEE
Confidence 9999999999986544 89999999999999999999999999999999999999999998754443
No 35
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.92 E-value=8.2e-24 Score=250.12 Aligned_cols=324 Identities=17% Similarity=0.210 Sum_probs=205.0
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhc-CC--CCCCCCceEEEEeCc-hhhHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQ-GF--DGKPMVKKAIIVTPT-SLVSNW 258 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~-g~--~~~p~~~~~LIV~P~-sLl~qW 258 (911)
.++|+|.+++..++. .+.+|+..+||+|||+..+..+...+.. .. ........+|||+|+ .|+.|+
T Consensus 143 ~ptpiQ~~aip~il~----------g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi 212 (518)
T PLN00206 143 FPTPIQMQAIPAALS----------GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQV 212 (518)
T ss_pred CCCHHHHHHHHHHhc----------CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHH
Confidence 567999999998853 2567999999999999877655443321 10 001123479999998 577888
Q ss_pred HHHHHHHhCC-CeEEEEe-cCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCcc
Q 043990 259 EAEIKKWVGG-RVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 259 ~~Ei~k~~~~-~~~v~~~-~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~ 335 (911)
.+++..+... .+.+..+ ++.........+. ..++|+|+|++.+...... ......+.+||+||||++-...
T Consensus 213 ~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~------~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g 286 (518)
T PLN00206 213 EDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQ------QGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG 286 (518)
T ss_pred HHHHHHHhCCCCceEEEEECCcchHHHHHHhc------CCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcc
Confidence 8888887653 3343333 3333332222221 3468999999987443321 1224567899999999973211
Q ss_pred chhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccC
Q 043990 336 TLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHL 415 (911)
Q Consensus 336 s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~L 415 (911)
|.. .+..++. .+
T Consensus 287 ----------------------------f~~---------------------------~i~~i~~-------------~l 298 (518)
T PLN00206 287 ----------------------------FRD---------------------------QVMQIFQ-------------AL 298 (518)
T ss_pred ----------------------------hHH---------------------------HHHHHHH-------------hC
Confidence 110 1111111 22
Q ss_pred CCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcC
Q 043990 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF 495 (911)
Q Consensus 416 P~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~ 495 (911)
|..........+++.-..+.. .+..++..+.... ..........
T Consensus 299 ~~~q~l~~SATl~~~v~~l~~-----------------------------~~~~~~~~i~~~~--~~~~~~~v~q----- 342 (518)
T PLN00206 299 SQPQVLLFSATVSPEVEKFAS-----------------------------SLAKDIILISIGN--PNRPNKAVKQ----- 342 (518)
T ss_pred CCCcEEEEEeeCCHHHHHHHH-----------------------------HhCCCCEEEEeCC--CCCCCcceeE-----
Confidence 333333333344332111111 1111121111000 0000000000
Q ss_pred CcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH-cCCCEEEEeCCCCHHH
Q 043990 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE-RRYPYLRLDGTTSISK 574 (911)
Q Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~-~gi~~~~LdGsts~~~ 574 (911)
...+.....|...|.++|..... ...++|||++....++.+...|.. .|+++..++|+++..+
T Consensus 343 ---------------~~~~~~~~~k~~~l~~~l~~~~~-~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~e 406 (518)
T PLN00206 343 ---------------LAIWVETKQKKQKLFDILKSKQH-FKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKE 406 (518)
T ss_pred ---------------EEEeccchhHHHHHHHHHHhhcc-cCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHH
Confidence 00112234466677777765433 346899999999999999999975 6999999999999999
Q ss_pred HHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeC
Q 043990 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLST 647 (911)
Q Consensus 575 R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~ 647 (911)
|..+++.|+++... +|++|+++++|||++.+++||+||+|.++..|.|++||++|.|..-.+ |.|+..
T Consensus 407 R~~il~~Fr~G~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~a--i~f~~~ 474 (518)
T PLN00206 407 RREVMKSFLVGEVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTA--IVFVNE 474 (518)
T ss_pred HHHHHHHHHCCCCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEE--EEEEch
Confidence 99999999986655 899999999999999999999999999999999999999999976444 445554
No 36
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.92 E-value=3.9e-23 Score=241.77 Aligned_cols=317 Identities=16% Similarity=0.230 Sum_probs=210.1
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEI 262 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei 262 (911)
+.|+|.+++..++. .+..|+..+||+|||+..+..+...+.... ....+||+||+ .|+.||.+++
T Consensus 27 ~t~iQ~~ai~~~l~----------g~dvi~~a~TGsGKT~a~~lpil~~l~~~~----~~~~~lil~PtreLa~Q~~~~~ 92 (460)
T PRK11776 27 MTPIQAQSLPAILA----------GKDVIAQAKTGSGKTAAFGLGLLQKLDVKR----FRVQALVLCPTRELADQVAKEI 92 (460)
T ss_pred CCHHHHHHHHHHhc----------CCCEEEECCCCCcHHHHHHHHHHHHhhhcc----CCceEEEEeCCHHHHHHHHHHH
Confidence 55999999998863 346799999999999887666655543321 12368999998 6779999999
Q ss_pred HHHhCC--CeEEEEecCCcch-hhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccchh
Q 043990 263 KKWVGG--RVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 263 ~k~~~~--~~~v~~~~~~~r~-~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
.++... .+.+..++++... .....+. ...+|+|+|++.+...... ......+++||+||||++-+..
T Consensus 93 ~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~------~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g--- 163 (460)
T PRK11776 93 RRLARFIPNIKVLTLCGGVPMGPQIDSLE------HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG--- 163 (460)
T ss_pred HHHHhhCCCcEEEEEECCCChHHHHHHhc------CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC---
Confidence 987642 4666666655432 1122211 3568999999998654432 1123568999999999873211
Q ss_pred ccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc
Q 043990 339 NRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK 418 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k 418 (911)
|. ..+..++. .+|+.
T Consensus 164 -------------------------~~---------------------------~~l~~i~~-------------~~~~~ 178 (460)
T PRK11776 164 -------------------------FQ---------------------------DAIDAIIR-------------QAPAR 178 (460)
T ss_pred -------------------------cH---------------------------HHHHHHHH-------------hCCcc
Confidence 00 11111111 23433
Q ss_pred EE-EEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 419 II-EVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 419 ~~-~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
.. ......+.+.-..+.. ....+|..+...... .......
T Consensus 179 ~q~ll~SAT~~~~~~~l~~-----------------------------~~~~~~~~i~~~~~~---~~~~i~~------- 219 (460)
T PRK11776 179 RQTLLFSATYPEGIAAISQ-----------------------------RFQRDPVEVKVESTH---DLPAIEQ------- 219 (460)
T ss_pred cEEEEEEecCcHHHHHHHH-----------------------------HhcCCCEEEEECcCC---CCCCeeE-------
Confidence 22 2222233322111111 112223221100000 0000000
Q ss_pred ccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Q 043990 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577 (911)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~ 577 (911)
.+ .......|+..|..++... ...++||||+....++.+...|...|+.+..++|.+++.+|..
T Consensus 220 ~~-------------~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~ 283 (460)
T PRK11776 220 RF-------------YEVSPDERLPALQRLLLHH---QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQ 283 (460)
T ss_pred EE-------------EEeCcHHHHHHHHHHHHhc---CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 00 0112234788888887653 4578999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 578 iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
+++.|+++... +|++|+++++|||++++++||+||++.++..|.||+||++|.|+.-. .|.|+...
T Consensus 284 ~l~~F~~g~~~---vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 284 VLVRFANRSCS---VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred HHHHHHcCCCc---EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 99999986554 89999999999999999999999999999999999999999997754 44455543
No 37
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.92 E-value=6.5e-23 Score=239.30 Aligned_cols=434 Identities=14% Similarity=0.109 Sum_probs=230.6
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.||+||.+-++-++ +.++|+|.+||+|||++|+.+|..+++..+ ..++++.+|+ .||.|....
T Consensus 62 ~lR~YQ~eivq~AL-----------gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-----~~KiVF~aP~~pLv~QQ~a~ 125 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-----------GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-----KGKVVFLAPTRPLVNQQIAC 125 (746)
T ss_pred cccHHHHHHhHHhh-----------cCCeEEEeecCCCccchHHHHHHHHHhcCC-----cceEEEeeCCchHHHHHHHH
Confidence 69999999998773 468899999999999999999999888763 3689999998 577888877
Q ss_pred HHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcccccc--CCCCcEEEEcCccccCCccchhc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSC--SESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~--~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
+..++.. ..+....++........ ......+|+++|++.+.+....-.. ...|.++|+||||+-........
T Consensus 126 ~~~~~~~-~~~T~~l~~~~~~~~r~-----~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~ 199 (746)
T KOG0354|consen 126 FSIYLIP-YSVTGQLGDTVPRSNRG-----EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNN 199 (746)
T ss_pred HhhccCc-ccceeeccCccCCCchh-----hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHH
Confidence 7777654 44444444422211110 1123468999999999876653321 24588999999999765544221
Q ss_pred c----------------------CCHHHHHHhhhhcCCCCCC--CHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHH
Q 043990 340 R----------------------NDLEEFFAMVNFTNPGILG--DAAYFRRYYETSIICGREPTATEEEKKLGIERSSEL 395 (911)
Q Consensus 340 ~----------------------N~l~El~sLl~fl~P~~l~--~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL 395 (911)
- +++...-..+.-|.-. +. +...-...|..- +........ -..........|
T Consensus 200 Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~l--r~~~~i~v~-~~~~~~~~~~~f 275 (746)
T KOG0354|consen 200 IMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEEL--REHVQIPVD-LSLCERDIEDPF 275 (746)
T ss_pred HHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHH--hccCcccCc-HHHhhhhhhhhH
Confidence 1 2222222222221111 00 000001111110 000000000 000111122344
Q ss_pred HHHhhHHhhhhcHHHHhccCCCcEEEE--EEecCCHHHHHHHHHHHHhHH--HHHHhhhh-------hhHhhHHHHHHHH
Q 043990 396 SAKVNQFILRRTNALLSNHLPPKIIEV--VCCKLTPLQSELYNHFIHSKN--VKRAISEE-------TKQSKILAYITAL 464 (911)
Q Consensus 396 ~~~l~~~ilRRtk~~v~~~LP~k~~~v--v~~~ls~~Q~~lY~~~l~~~~--~~~~~~~~-------~~~~~~l~~l~~L 464 (911)
..++.|++.+-. ...|.+-...- ........+...|..+..... +....... .........+..+
T Consensus 276 ~~~i~p~l~~l~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~ 351 (746)
T KOG0354|consen 276 GMIIEPLLQQLQ----EEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYL 351 (746)
T ss_pred HHHHHHHHHHHH----hcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhh
Confidence 555555542211 11222111000 000000111111111000000 00000000 0000000111111
Q ss_pred HHHhcChhhh-HhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhh-cCCCeEEEE
Q 043990 465 KKLCNHPKLI-YDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ-RTDDRIVLV 542 (911)
Q Consensus 465 rklcnhP~Ll-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~-~~~~KVIIF 542 (911)
.....--.+- +.....+......+...+..+ ...........+|+..|.++|....+ .+..|+|||
T Consensus 352 ~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~------------~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIF 419 (746)
T KOG0354|consen 352 EDFYEEVALKKYLKLELEARLIRNFTENMNEL------------EHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIF 419 (746)
T ss_pred hhhccccchhHHHHHHhcchhhHHHHHHHHhh------------hhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEE
Confidence 1000000000 000000000000000000000 00001112358999999998876654 456799999
Q ss_pred EcchHHHHHHHHHHHH---cCCCEEEEeC--------CCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEE
Q 043990 543 SNYTQTLDLFAQLCRE---RRYPYLRLDG--------TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRL 611 (911)
Q Consensus 543 Sq~~~~ld~L~~~L~~---~gi~~~~LdG--------sts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~V 611 (911)
+.+++.++.|..+|.. .|++...+.| +|++.+.+.+++.|++|..+ +|++|.+|.+|||+..+|-|
T Consensus 420 ve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lV 496 (746)
T KOG0354|consen 420 VETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLV 496 (746)
T ss_pred EehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEE
Confidence 9999999999999883 3667666766 68899999999999997655 99999999999999999999
Q ss_pred EEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 043990 612 VLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK 666 (911)
Q Consensus 612 Il~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~ 666 (911)
|.||..-||..+.||+|| +| ++.-.++.|.+ |.-+-+--..+..|+.+..
T Consensus 497 IcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~~~~~~~E~~~~~~e~lm~ 546 (746)
T KOG0354|consen 497 ICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-GSEVIEFERNNLAKEKLMN 546 (746)
T ss_pred EEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-chhHHHHHHHHHhHHHHHH
Confidence 999999999999999999 66 55555554555 4433333334444555543
No 38
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.8e-23 Score=223.45 Aligned_cols=324 Identities=21% Similarity=0.218 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~ 265 (911)
+.|++|+..++. .+-||-+.++|+|||...+..|...+-+. |..-.+||++|+.-+.+...|...-
T Consensus 86 ~IQ~~aiP~~L~----------g~dvIglAeTGSGKT~afaLPIl~~LL~~----p~~~~~lVLtPtRELA~QI~e~fe~ 151 (476)
T KOG0330|consen 86 KIQSEAIPVALG----------GRDVIGLAETGSGKTGAFALPILQRLLQE----PKLFFALVLTPTRELAQQIAEQFEA 151 (476)
T ss_pred hhhhhhcchhhC----------CCcEEEEeccCCCchhhhHHHHHHHHHcC----CCCceEEEecCcHHHHHHHHHHHHH
Confidence 789999998853 46789999999999998666555444443 2335799999997776665555444
Q ss_pred hCC--CeEEEEecCCc-chhhhccCcccCCCCCCccEEEEehHHHHhhcc--ccccCCCCcEEEEcCccccCCccchhcc
Q 043990 266 VGG--RVQLIALCEST-RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS--KFSCSESCDLLICDEAHRLKNDQTLTNR 340 (911)
Q Consensus 266 ~~~--~~~v~~~~~~~-r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~--~~~~~~~~~lVIlDEAH~lKN~~s~~~~ 340 (911)
++. .+++..+-|+. .......+ ..+++|+|+|++.+..+.. +........++|+|||.++-|..
T Consensus 152 Lg~~iglr~~~lvGG~~m~~q~~~L------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~d----- 220 (476)
T KOG0330|consen 152 LGSGIGLRVAVLVGGMDMMLQANQL------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMD----- 220 (476)
T ss_pred hccccCeEEEEEecCchHHHHHHHh------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhh-----
Confidence 432 55555554443 22222221 2467899999999976654 11123456789999999995421
Q ss_pred CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc-E
Q 043990 341 NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK-I 419 (911)
Q Consensus 341 N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k-~ 419 (911)
| ...|..++. .+|.+ .
T Consensus 221 -----------------------F---------------------------~~~ld~ILk-------------~ip~erq 237 (476)
T KOG0330|consen 221 -----------------------F---------------------------EEELDYILK-------------VIPRERQ 237 (476)
T ss_pred -----------------------h---------------------------HHHHHHHHH-------------hcCccce
Confidence 1 122333332 34443 3
Q ss_pred EEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCccc
Q 043990 420 IEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEM 499 (911)
Q Consensus 420 ~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (911)
...+...|+..-+++-...+..... ...++....+..|+|-.-
T Consensus 238 t~LfsATMt~kv~kL~rasl~~p~~-------v~~s~ky~tv~~lkQ~yl------------------------------ 280 (476)
T KOG0330|consen 238 TFLFSATMTKKVRKLQRASLDNPVK-------VAVSSKYQTVDHLKQTYL------------------------------ 280 (476)
T ss_pred EEEEEeecchhhHHHHhhccCCCeE-------EeccchhcchHHhhhheE------------------------------
Confidence 4455677887666665332211100 001111111122221100
Q ss_pred ccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Q 043990 500 FSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLV 579 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv 579 (911)
.+...-|-.+|..||.+. .+..+||||+...+.+.+.-+|+..|+.+..|+|.|++..|..++
T Consensus 281 --------------fv~~k~K~~yLV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l 343 (476)
T KOG0330|consen 281 --------------FVPGKDKDTYLVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGAL 343 (476)
T ss_pred --------------eccccccchhHHHHHHhh---cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHH
Confidence 011133556788888865 468999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHH
Q 043990 580 NHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQ 658 (911)
Q Consensus 580 ~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq 658 (911)
+.|+.+.-+ +|++|++|++|||++.++.||+||.|-+-..|++|.||+.|.| +.-.+..|++...|| .+|+.
T Consensus 344 ~~Fk~~~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve--~~qrI 415 (476)
T KOG0330|consen 344 NKFKAGARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE--LVQRI 415 (476)
T ss_pred HHHhccCCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH--HHHHH
Confidence 999986544 9999999999999999999999999999999999999999999 666777889885444 55554
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.91 E-value=1.8e-22 Score=241.87 Aligned_cols=314 Identities=15% Similarity=0.180 Sum_probs=206.3
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEI 262 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei 262 (911)
+.|+|.+++..++. .+.+|+..+||+|||++.+..+...+.... ....+|||||+ .|+.||.+++
T Consensus 29 ptpiQ~~ai~~ll~----------g~dvl~~ApTGsGKT~af~lpll~~l~~~~----~~~~~LIL~PTreLa~Qv~~~l 94 (629)
T PRK11634 29 PSPIQAECIPHLLN----------GRDVLGMAQTGSGKTAAFSLPLLHNLDPEL----KAPQILVLAPTRELAVQVAEAM 94 (629)
T ss_pred CCHHHHHHHHHHHc----------CCCEEEEcCCCCcHHHHHHHHHHHHhhhcc----CCCeEEEEeCcHHHHHHHHHHH
Confidence 34999999998863 246788999999999987655544433221 12478999998 6779999999
Q ss_pred HHHhCC--CeEEEEecCCcchh-hhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccchh
Q 043990 263 KKWVGG--RVQLIALCESTRDD-VVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 263 ~k~~~~--~~~v~~~~~~~r~~-~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
.+|... .+.+..++++.... ....+. ..++|+|+|++.+..+... ......+.+||+||||.+-+..
T Consensus 95 ~~~~~~~~~i~v~~~~gG~~~~~q~~~l~------~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g--- 165 (629)
T PRK11634 95 TDFSKHMRGVNVVALYGGQRYDVQLRALR------QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG--- 165 (629)
T ss_pred HHHHhhcCCceEEEEECCcCHHHHHHHhc------CCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcc---
Confidence 988642 35666665554322 111111 3468999999988654332 1124567899999999873211
Q ss_pred ccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc
Q 043990 339 NRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK 418 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k 418 (911)
|. ..+..++ ..+|..
T Consensus 166 -------------------------f~---------------------------~di~~Il-------------~~lp~~ 180 (629)
T PRK11634 166 -------------------------FI---------------------------EDVETIM-------------AQIPEG 180 (629)
T ss_pred -------------------------cH---------------------------HHHHHHH-------------HhCCCC
Confidence 00 0111111 124433
Q ss_pred EEE-EEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 419 IIE-VVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 419 ~~~-vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
... .....|++....+... .+.+|..+.-. ...........
T Consensus 181 ~q~llfSAT~p~~i~~i~~~-----------------------------~l~~~~~i~i~--~~~~~~~~i~q------- 222 (629)
T PRK11634 181 HQTALFSATMPEAIRRITRR-----------------------------FMKEPQEVRIQ--SSVTTRPDISQ------- 222 (629)
T ss_pred CeEEEEEccCChhHHHHHHH-----------------------------HcCCCeEEEcc--CccccCCceEE-------
Confidence 222 2223333322222211 12222211100 00000000000
Q ss_pred ccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Q 043990 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577 (911)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~ 577 (911)
.+ .......|...|..+|... ...++||||+....++.+...|...|+.+..++|.+++.+|.+
T Consensus 223 ~~-------------~~v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~ 286 (629)
T PRK11634 223 SY-------------WTVWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQ 286 (629)
T ss_pred EE-------------EEechhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHH
Confidence 00 0011245777777777642 3579999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 578 iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
++++|+++..+ +|++|+++++|||++.+++||+||+|.++..|.|++||++|.|.+-.+.++
T Consensus 287 il~~Fr~G~~~---ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~ 348 (629)
T PRK11634 287 TLERLKDGRLD---ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 (629)
T ss_pred HHHHHhCCCCC---EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEE
Confidence 99999986555 899999999999999999999999999999999999999999987655444
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.3e-22 Score=237.51 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=98.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEe
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLF 614 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~ 614 (911)
.+.++|||++....++.+...|...|+++..++|+++.++|..+++.|.++... +|++|.+.|+|||+++++.||+|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~---vLVaT~~~~~GID~p~V~~VI~~ 301 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ---VVVATVAFGMGINKPDVRFVIHY 301 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc---EEEEechhhccCCcccceEEEEe
Confidence 467889999999999999999999999999999999999999999999986544 89999999999999999999999
Q ss_pred CCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 615 DPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 615 Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
++|.++..|.|++||++|.|+...+.+|
T Consensus 302 ~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 302 SLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 9999999999999999999998877765
No 41
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=3.8e-23 Score=225.84 Aligned_cols=339 Identities=22% Similarity=0.367 Sum_probs=225.6
Q ss_pred hhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh-hHHH
Q 043990 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL-VSNW 258 (911)
Q Consensus 180 l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL-l~qW 258 (911)
-...|||||...+..|+- ....+.||+..++|.|||++.++.+.+. .+++||+|-+++ |.||
T Consensus 299 Pst~iRpYQEksL~KMFG-------NgRARSGiIVLPCGAGKtLVGvTAa~ti----------kK~clvLcts~VSVeQW 361 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFG-------NGRARSGIIVLPCGAGKTLVGVTAACTI----------KKSCLVLCTSAVSVEQW 361 (776)
T ss_pred cccccCchHHHHHHHHhC-------CCcccCceEEEecCCCCceeeeeeeeee----------cccEEEEecCccCHHHH
Confidence 356899999999999962 3455677999999999999999888764 467999999865 8999
Q ss_pred HHHHHHHhCCC-eEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhc---------cccccCCCCcEEEEcCc
Q 043990 259 EAEIKKWVGGR-VQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHS---------SKFSCSESCDLLICDEA 328 (911)
Q Consensus 259 ~~Ei~k~~~~~-~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~---------~~~~~~~~~~lVIlDEA 328 (911)
...+..|.... -.+..+....++. ......|+|+||.++.... -.+.....|+++|+||.
T Consensus 362 kqQfk~wsti~d~~i~rFTsd~Ke~----------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEV 431 (776)
T KOG1123|consen 362 KQQFKQWSTIQDDQICRFTSDAKER----------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEV 431 (776)
T ss_pred HHHHHhhcccCccceEEeecccccc----------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehh
Confidence 99999997642 2333333333321 1234579999999983211 13445678999999999
Q ss_pred cccCCccchhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhh---ccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhh
Q 043990 329 HRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSI---ICGREPTATEEEKKLGIERSSELSAKVNQFILR 405 (911)
Q Consensus 329 H~lKN~~s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi---~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilR 405 (911)
|-+- . ..|++.....- ..|..+.... ....+..|+=++.|-++.
T Consensus 432 HvvP-----------A-----------------~MFRRVlsiv~aHcKLGLTATLvR-----EDdKI~DLNFLIGPKlYE 478 (776)
T KOG1123|consen 432 HVVP-----------A-----------------KMFRRVLSIVQAHCKLGLTATLVR-----EDDKITDLNFLIGPKLYE 478 (776)
T ss_pred ccch-----------H-----------------HHHHHHHHHHHHHhhccceeEEee-----ccccccccceeecchhhh
Confidence 9882 2 22333221100 0011111110 112234566666776665
Q ss_pred hcHHHHhc--cCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCC
Q 043990 406 RTNALLSN--HLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNP 483 (911)
Q Consensus 406 Rtk~~v~~--~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~ 483 (911)
-...++.+ ++..-..-.|||+||+. +|+.++.....++.+ ++
T Consensus 479 AnWmdL~~kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~kr~l-------------------------Ly-------- 522 (776)
T KOG1123|consen 479 ANWMDLQKKGHIAKVQCAEVWCPMTPE---FYREYLRENTRKRML-------------------------LY-------- 522 (776)
T ss_pred ccHHHHHhCCceeEEeeeeeecCCCHH---HHHHHHhhhhhhhhe-------------------------ee--------
Confidence 55555543 35555667899999985 555544332211111 00
Q ss_pred CCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCE
Q 043990 484 GTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPY 563 (911)
Q Consensus 484 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~ 563 (911)
+-...|+.+-.-|++.... -|+|+||||...-.|...+- +.|.+|
T Consensus 523 -------------------------------vMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAi---kl~Kpf 567 (776)
T KOG1123|consen 523 -------------------------------VMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAI---KLGKPF 567 (776)
T ss_pred -------------------------------ecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHH---HcCCce
Confidence 0014466666666665544 68999999988765554443 445554
Q ss_pred EEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCC-CcchHHHHHHhhhhcCCcc----c
Q 043990 564 LRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDW-NPANDKQAAARVWRDGQKK----R 638 (911)
Q Consensus 564 ~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~W-NPa~~~QAigR~~RiGQkk----~ 638 (911)
|.|.|++.+|.+|++.|+....-.-+|| +|+|...+||+.|+.+|-..... +-..+.||.||+.|.-... +
T Consensus 568 --IYG~Tsq~ERm~ILqnFq~n~~vNTIFl--SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fn 643 (776)
T KOG1123|consen 568 --IYGPTSQNERMKILQNFQTNPKVNTIFL--SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFN 643 (776)
T ss_pred --EECCCchhHHHHHHHhcccCCccceEEE--eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccc
Confidence 7899999999999999996332222333 69999999999999999998765 5567899999999975332 5
Q ss_pred EEEEEEEeCCCHHHH
Q 043990 639 VFIYRFLSTGTIEEK 653 (911)
Q Consensus 639 V~VyrLi~~gTIEEk 653 (911)
++.|-|+.++|.|-.
T Consensus 644 afFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 644 AFFYSLVSKDTQEMY 658 (776)
T ss_pred eeeeeeeecchHHHH
Confidence 899999999998843
No 42
>PTZ00424 helicase 45; Provisional
Probab=99.90 E-value=1.8e-21 Score=223.76 Aligned_cols=121 Identities=18% Similarity=0.273 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCc
Q 043990 520 KMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599 (911)
Q Consensus 520 Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkag 599 (911)
|...+..++.. ....++|||++....++.+...|...++.+..++|+++.++|..+++.|+++... +|++|.++
T Consensus 254 ~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~---vLvaT~~l 327 (401)
T PTZ00424 254 KFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR---VLITTDLL 327 (401)
T ss_pred HHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---EEEEcccc
Confidence 44455555443 2457999999999999999999999999999999999999999999999986554 89999999
Q ss_pred ccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 600 g~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
++|+|++.+++||+||++.++..+.|++||++|.|..-. +|.|++..
T Consensus 328 ~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~--~i~l~~~~ 374 (401)
T PTZ00424 328 ARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGV--AINFVTPD 374 (401)
T ss_pred cCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCce--EEEEEcHH
Confidence 999999999999999999999999999999999986544 45556543
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.89 E-value=9.4e-22 Score=236.74 Aligned_cols=312 Identities=16% Similarity=0.166 Sum_probs=198.7
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.+||+|.+++..++. .+.++++.+||.|||+.+...+. .. .+.+|||+|. +|+.++...
T Consensus 13 ~fr~~Q~~~i~~il~----------g~dvlv~~PTG~GKTl~y~lpal--~~--------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 13 DFRPGQEEIISHVLD----------GRDVLVVMPTGGGKSLCYQVPAL--LL--------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred CCCHHHHHHHHHHHc----------CCCEEEEcCCCccHhHHHHHHHH--Hc--------CCcEEEEcCCHHHHHHHHHH
Confidence 578999999998863 24679999999999998764433 22 2358999997 788889888
Q ss_pred HHHHhCCCeEEEEecCCcchhhhcc-CcccCCCCCCccEEEEehHHHHhhc-cccccCCCCcEEEEcCccccCCccchhc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVSG-IDSFTDPCSSLQVLIVSYETFRMHS-SKFSCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~~-~~~~~~~~~~~~VvI~Sye~l~~~~-~~~~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
+... + +.+..+++......... .... ..+.++|+++|++.+.... ..+.....+++||+||||.+....
T Consensus 73 l~~~-g--i~~~~~~s~~~~~~~~~~~~~l--~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g---- 143 (591)
T TIGR01389 73 LRAA-G--VAAAYLNSTLSAKEQQDIEKAL--VNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWG---- 143 (591)
T ss_pred HHHc-C--CcEEEEeCCCCHHHHHHHHHHH--hCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccccc----
Confidence 8775 3 34444444332211110 0111 1245789999999884321 122234678999999999983211
Q ss_pred cCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcE
Q 043990 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKI 419 (911)
Q Consensus 340 ~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~ 419 (911)
..|+..|. .|..+. ..+|...
T Consensus 144 ----------------------~~frp~y~------------------------~l~~l~-------------~~~~~~~ 164 (591)
T TIGR01389 144 ----------------------HDFRPEYQ------------------------RLGSLA-------------ERFPQVP 164 (591)
T ss_pred ----------------------CccHHHHH------------------------HHHHHH-------------HhCCCCC
Confidence 01221111 111111 1234333
Q ss_pred EEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCccc
Q 043990 420 IEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEM 499 (911)
Q Consensus 420 ~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (911)
.......+++.-.......+ . ...|..+... + ..++.
T Consensus 165 vi~lTAT~~~~~~~~i~~~l---------~------------------~~~~~~~~~~----------~------~r~nl 201 (591)
T TIGR01389 165 RIALTATADAETRQDIRELL---------R------------------LADANEFITS----------F------DRPNL 201 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHc---------C------------------CCCCCeEecC----------C------CCCCc
Confidence 22333334432221111000 0 0001000000 0 00000
Q ss_pred ccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Q 043990 500 FSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLV 579 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv 579 (911)
. -.......+...+..++.. ..+.++||||+.....+.+...|...|+++..+||+++.++|..++
T Consensus 202 ~-----------~~v~~~~~~~~~l~~~l~~---~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~ 267 (591)
T TIGR01389 202 R-----------FSVVKKNNKQKFLLDYLKK---HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQ 267 (591)
T ss_pred E-----------EEEEeCCCHHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 0 0001123455555555554 3468999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 580 NHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 580 ~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+.|..+.. .+|++|.+.|.|||++.++.||+|++|+|...|.|++||++|.|+...+.++
T Consensus 268 ~~F~~g~~---~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~ 327 (591)
T TIGR01389 268 EDFLYDDV---KVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILL 327 (591)
T ss_pred HHHHcCCC---cEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEe
Confidence 99998654 4999999999999999999999999999999999999999999987766543
No 44
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.89 E-value=1e-21 Score=236.12 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=99.8
Q ss_pred HHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCC
Q 043990 528 LGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIG 607 (911)
Q Consensus 528 L~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~ 607 (911)
+..+....+.++||||+....++.+...|...|+++..++|+++.++|.++++.|..+... +|++|.+.|.|||+++
T Consensus 228 ~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~---VLVaT~a~~~GIDip~ 304 (607)
T PRK11057 228 MRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ---IVVATVAFGMGINKPN 304 (607)
T ss_pred HHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC---EEEEechhhccCCCCC
Confidence 3333334578999999999999999999999999999999999999999999999986544 8999999999999999
Q ss_pred CCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEE
Q 043990 608 GNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 608 An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~V 641 (911)
++.||+||+|.+...|.|++||++|.|....+.+
T Consensus 305 V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred cCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 9999999999999999999999999998766544
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.89 E-value=8.7e-22 Score=239.43 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=98.5
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeC
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~D 615 (911)
+...||||..+...+.+...|...|+++..++|+|+.++|..+.++|..+... +|++|.+.|.|||++..+.||+|+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHyd 756 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHS 756 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCcEEEEcC
Confidence 56899999999999999999999999999999999999999999999986544 899999999999999999999999
Q ss_pred CCCCcchHHHHHHhhhhcCCcccEEEEE
Q 043990 616 PDWNPANDKQAAARVWRDGQKKRVFIYR 643 (911)
Q Consensus 616 p~WNPa~~~QAigR~~RiGQkk~V~Vyr 643 (911)
+|.+...|.|++||++|.|+.-.|..|+
T Consensus 757 lPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 757 LPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999999999999987777664
No 46
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.7e-21 Score=226.45 Aligned_cols=329 Identities=17% Similarity=0.245 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch-hhHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS-LVSNWEAEIKK 264 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s-Ll~qW~~Ei~k 264 (911)
|.|..++..++. .+-.|....+|+|||+..+.-+...+... ......++||++|+. |..|-.+++.+
T Consensus 54 ~IQ~~~IP~~l~----------g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~--~~~~~~~aLil~PTRELA~Qi~~~~~~ 121 (513)
T COG0513 54 PIQLAAIPLILA----------GRDVLGQAQTGTGKTAAFLLPLLQKILKS--VERKYVSALILAPTRELAVQIAEELRK 121 (513)
T ss_pred HHHHHHHHHHhC----------CCCEEEECCCCChHHHHHHHHHHHHHhcc--cccCCCceEEECCCHHHHHHHHHHHHH
Confidence 999999998863 26778889999999988666665554431 111111299999995 55677777777
Q ss_pred HhCC--CeEEEEecCCc-chhhhccCcccCCCCCCccEEEEehHHHHhhcccc-ccCCCCcEEEEcCccccCCccchhcc
Q 043990 265 WVGG--RVQLIALCEST-RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKF-SCSESCDLLICDEAHRLKNDQTLTNR 340 (911)
Q Consensus 265 ~~~~--~~~v~~~~~~~-r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~-~~~~~~~lVIlDEAH~lKN~~s~~~~ 340 (911)
+... .+.+..+.|+. .......+.. .++|||.|+..+..+...- .......++|+|||.+|-+...
T Consensus 122 ~~~~~~~~~~~~i~GG~~~~~q~~~l~~------~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf---- 191 (513)
T COG0513 122 LGKNLGGLRVAVVYGGVSIRKQIEALKR------GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGF---- 191 (513)
T ss_pred HHhhcCCccEEEEECCCCHHHHHHHHhc------CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCC----
Confidence 7653 35555555443 3333333321 3789999999986554422 2356788999999999844211
Q ss_pred CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc-E
Q 043990 341 NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK-I 419 (911)
Q Consensus 341 N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k-~ 419 (911)
. ..+..++ ..+|+. .
T Consensus 192 ------------------------~---------------------------~~i~~I~-------------~~~p~~~q 207 (513)
T COG0513 192 ------------------------I---------------------------DDIEKIL-------------KALPPDRQ 207 (513)
T ss_pred ------------------------H---------------------------HHHHHHH-------------HhCCcccE
Confidence 0 1122222 245552 2
Q ss_pred EEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCccc
Q 043990 420 IEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEM 499 (911)
Q Consensus 420 ~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (911)
.......|+...+.+-..+ ...|..+.-..........
T Consensus 208 tllfSAT~~~~i~~l~~~~-----------------------------l~~p~~i~v~~~~~~~~~~------------- 245 (513)
T COG0513 208 TLLFSATMPDDIRELARRY-----------------------------LNDPVEIEVSVEKLERTLK------------- 245 (513)
T ss_pred EEEEecCCCHHHHHHHHHH-----------------------------ccCCcEEEEcccccccccc-------------
Confidence 3333344555333332222 2233221110000000000
Q ss_pred ccCCCCCCCCCCCcc--cccc-hHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Q 043990 500 FSGRSGSWTGGDGAW--VELS-GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~--~~~S-~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~ 576 (911)
.....+ +... .|+..|..++.... ..++|||++.+..++.|...|..+|+++..|||++++.+|.
T Consensus 246 ---------~i~q~~~~v~~~~~k~~~L~~ll~~~~---~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~ 313 (513)
T COG0513 246 ---------KIKQFYLEVESEEEKLELLLKLLKDED---EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERD 313 (513)
T ss_pred ---------CceEEEEEeCCHHHHHHHHHHHHhcCC---CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHH
Confidence 000011 1112 48999999988753 35899999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHH
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQ 656 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~ 656 (911)
+++++|+++... +|++|+++++|||+.+.++||+||+|.++..|.||+||++|.|.+- ..+.|++. .-|...+.
T Consensus 314 ~~l~~F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~ 387 (513)
T COG0513 314 RALEKFKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLK 387 (513)
T ss_pred HHHHHHHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHH
Confidence 999999986555 9999999999999999999999999999999999999999999443 55556666 22444444
Q ss_pred HHHH
Q 043990 657 RQMS 660 (911)
Q Consensus 657 rq~~ 660 (911)
+..+
T Consensus 388 ~ie~ 391 (513)
T COG0513 388 RIEK 391 (513)
T ss_pred HHHH
Confidence 4433
No 47
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.87 E-value=2.6e-20 Score=227.47 Aligned_cols=342 Identities=15% Similarity=0.154 Sum_probs=206.0
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|+|||.+++..+.+ .+.+|++-+||+|||+..+..+...+...+ ..++|||+|+ .|..|-..+
T Consensus 36 ~p~~~Q~~ai~~il~----------G~nvvv~apTGSGKTla~~LPiL~~l~~~~-----~~~aL~l~PtraLa~q~~~~ 100 (742)
T TIGR03817 36 RPWQHQARAAELAHA----------GRHVVVATGTASGKSLAYQLPVLSALADDP-----RATALYLAPTKALAADQLRA 100 (742)
T ss_pred cCCHHHHHHHHHHHC----------CCCEEEECCCCCcHHHHHHHHHHHHHhhCC-----CcEEEEEcChHHHHHHHHHH
Confidence 588999999998753 356899999999999998776665554331 2479999998 666788888
Q ss_pred HHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc----c-ccCCCCcEEEEcCccccCCccc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK----F-SCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~----~-~~~~~~~lVIlDEAH~lKN~~s 336 (911)
+.++....+.+..++|.........+. ...+|+|+|++++....-. + ......++||+||||.+.+.
T Consensus 101 l~~l~~~~i~v~~~~Gdt~~~~r~~i~------~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~-- 172 (742)
T TIGR03817 101 VRELTLRGVRPATYDGDTPTEERRWAR------EHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV-- 172 (742)
T ss_pred HHHhccCCeEEEEEeCCCCHHHHHHHh------cCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc--
Confidence 888864346676677665544332222 2368999999998532110 0 00246789999999997431
Q ss_pred hhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCC
Q 043990 337 LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLP 416 (911)
Q Consensus 337 ~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP 416 (911)
|.. .+. .+++|...... .++
T Consensus 173 ---------------------------fg~---------------------------~~~-----~il~rL~ri~~-~~g 192 (742)
T TIGR03817 173 ---------------------------FGS---------------------------HVA-----LVLRRLRRLCA-RYG 192 (742)
T ss_pred ---------------------------cHH---------------------------HHH-----HHHHHHHHHHH-hcC
Confidence 000 000 11122211111 233
Q ss_pred CcEEEEEEec--CCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhc
Q 043990 417 PKIIEVVCCK--LTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRF 494 (911)
Q Consensus 417 ~k~~~vv~~~--ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~ 494 (911)
.+. +.+.+. ++... ++.+ .+...|..+... ...+... .....
T Consensus 193 ~~~-q~i~~SATi~n~~-~~~~-----------------------------~l~g~~~~~i~~--~~~~~~~---~~~~~ 236 (742)
T TIGR03817 193 ASP-VFVLASATTADPA-AAAS-----------------------------RLIGAPVVAVTE--DGSPRGA---RTVAL 236 (742)
T ss_pred CCC-EEEEEecCCCCHH-HHHH-----------------------------HHcCCCeEEECC--CCCCcCc---eEEEE
Confidence 221 233332 22211 1111 111122111000 0000000 00000
Q ss_pred CCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc--------CCCEEEE
Q 043990 495 FPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER--------RYPYLRL 566 (911)
Q Consensus 495 ~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~--------gi~~~~L 566 (911)
+.+...... .. .+..........|...|..++. .+.++|||++.++.++.+...|... +.++..+
T Consensus 237 ~~p~~~~~~-~~-~~~~~r~~~~~~~~~~l~~l~~-----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~ 309 (742)
T TIGR03817 237 WEPPLTELT-GE-NGAPVRRSASAEAADLLADLVA-----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAY 309 (742)
T ss_pred ecCCccccc-cc-cccccccchHHHHHHHHHHHHH-----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhe
Confidence 001100000 00 0000000011234444444443 3689999999999999999888764 5677889
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEe
Q 043990 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLS 646 (911)
Q Consensus 567 dGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~ 646 (911)
+|++++++|.++.++|+++.. .+|++|++++.|||+.+.+.||+|+.|-+...+.||+||++|.|+.-. ++-++.
T Consensus 310 hgg~~~~eR~~ie~~f~~G~i---~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~ 384 (742)
T TIGR03817 310 RAGYLPEDRRELERALRDGEL---LGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVAR 384 (742)
T ss_pred ecCCCHHHHHHHHHHHHcCCc---eEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeC
Confidence 999999999999999998654 489999999999999999999999999999999999999999997654 333444
Q ss_pred CCCHHHHHH
Q 043990 647 TGTIEEKVY 655 (911)
Q Consensus 647 ~gTIEEkI~ 655 (911)
.+..|..++
T Consensus 385 ~~~~d~~~~ 393 (742)
T TIGR03817 385 DDPLDTYLV 393 (742)
T ss_pred CChHHHHHH
Confidence 455565443
No 48
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.86 E-value=6.9e-21 Score=210.02 Aligned_cols=343 Identities=15% Similarity=0.214 Sum_probs=216.6
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCC-----CCCCCceEEEEeCchhh-HHH
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFD-----GKPMVKKAIIVTPTSLV-SNW 258 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~-----~~p~~~~~LIV~P~sLl-~qW 258 (911)
-|.|+.++.-+++ .+..|...|+|+|||+..+--|......-|. ..-.....+|++|+.-| .|-
T Consensus 269 tpIqR~aipl~lQ----------~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqI 338 (673)
T KOG0333|consen 269 TPIQRQAIPLGLQ----------NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQI 338 (673)
T ss_pred chHHHhhccchhc----------cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHH
Confidence 3889999986653 3566888999999996655444333332221 01112368999999655 566
Q ss_pred HHHHHHHhCC-CeEEEEecCC-cchhhhccCcccCCCCCCccEEEEehHHHHhhc-cccccCCCCcEEEEcCccccCCcc
Q 043990 259 EAEIKKWVGG-RVQLIALCES-TRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHS-SKFSCSESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 259 ~~Ei~k~~~~-~~~v~~~~~~-~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~-~~~~~~~~~~lVIlDEAH~lKN~~ 335 (911)
+.|-.||+.. .++++.+.|+ ...+..-++. ..+.|+|+|+..+.... ..+.-...+.+||+|||.++-...
T Consensus 339 eeEt~kf~~~lg~r~vsvigg~s~EEq~fqls------~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmg 412 (673)
T KOG0333|consen 339 EEETNKFGKPLGIRTVSVIGGLSFEEQGFQLS------MGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMG 412 (673)
T ss_pred HHHHHHhcccccceEEEEecccchhhhhhhhh------ccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhccc
Confidence 7888888654 4565555444 3333322221 24679999999874322 223335678899999999985432
Q ss_pred chhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccC
Q 043990 336 TLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHL 415 (911)
Q Consensus 336 s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~L 415 (911)
.- .++-.++..+ |.. ...++..+.+ +. ..+...+. + .-
T Consensus 413 fE------~dv~~iL~~m-----------------Pss-n~k~~tde~~---~~---~~~~~~~~----~--------~k 450 (673)
T KOG0333|consen 413 FE------PDVQKILEQM-----------------PSS-NAKPDTDEKE---GE---ERVRKNFS----S--------SK 450 (673)
T ss_pred cc------HHHHHHHHhC-----------------Ccc-ccCCCccchh---hH---HHHHhhcc----c--------cc
Confidence 10 1111111111 110 0000000000 00 11111110 0 00
Q ss_pred CCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcC
Q 043990 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF 495 (911)
Q Consensus 416 P~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~ 495 (911)
--.+.......|+|.-..+-+.++.. |..+.-..... ...
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~-----------------------------pv~vtig~~gk--~~~--------- 490 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRR-----------------------------PVVVTIGSAGK--PTP--------- 490 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhC-----------------------------CeEEEeccCCC--Ccc---------
Confidence 00123344567777666555544322 22221110000 000
Q ss_pred CcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Q 043990 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKR 575 (911)
Q Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R 575 (911)
.....-.++..+.|...|.++|... ...++|||.|+++.++.|++.|.+.||++++|||+-++++|
T Consensus 491 -----------rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 491 -----------RVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQR 556 (673)
T ss_pred -----------chheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHH
Confidence 0000112344578889999998875 35899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 576 ~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
..++..|+.+..+ +|++|+++|+|||++..++||+||..-+-..|.+||||++|.|+.-.+.-|
T Consensus 557 e~aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSf 620 (673)
T KOG0333|consen 557 ENALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISF 620 (673)
T ss_pred HHHHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEE
Confidence 9999999997776 899999999999999999999999999999999999999999998765543
No 49
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.85 E-value=1.2e-19 Score=227.82 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=92.9
Q ss_pred HHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc------CC---CEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecC
Q 043990 527 LLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER------RY---PYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSK 597 (911)
Q Consensus 527 LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~------gi---~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStk 597 (911)
++..+......|+||||....+++.+.+.|... ++ .+..++|+++ ++.+++++|.++.. ..+++|++
T Consensus 689 l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~--p~IlVsvd 764 (1123)
T PRK11448 689 LAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERL--PNIVVTVD 764 (1123)
T ss_pred HHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCC--CeEEEEec
Confidence 443333223479999999999999888877653 22 3567999987 78899999987443 26899999
Q ss_pred CcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCC---cccEEEEEEE
Q 043990 598 AGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQ---KKRVFIYRFL 645 (911)
Q Consensus 598 agg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQ---kk~V~VyrLi 645 (911)
..++|+|++...+||++.|.-++..+.|++||+.|..- |..+.||.++
T Consensus 765 mL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 765 LLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 99999999999999999999999999999999999854 5667777764
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.85 E-value=2.1e-19 Score=217.05 Aligned_cols=317 Identities=15% Similarity=0.209 Sum_probs=194.9
Q ss_pred hhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHH
Q 043990 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNW 258 (911)
Q Consensus 180 l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW 258 (911)
+.-.|.++|++++..++.... .......+|..++|+|||+.++..+...+..+ .+++|++|+ .|..||
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~----~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-------~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLK----SDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-------YQVALMAPTEILAEQH 300 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhc----cCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-------CcEEEECCHHHHHHHH
Confidence 344799999999999876321 12223458999999999999877666665543 369999998 566999
Q ss_pred HHHHHHHhCC-CeEEEEecCCcchhhhc-cCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccc
Q 043990 259 EAEIKKWVGG-RVQLIALCESTRDDVVS-GIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 259 ~~Ei~k~~~~-~~~v~~~~~~~r~~~~~-~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
.+++.+|++. .+.+..++++....... .+... ..+.++|+|.|+..+.... . ..+.++||+||+|++.-..
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i--~~g~~~IiVgT~~ll~~~~-~---~~~l~lvVIDEaH~fg~~q- 373 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETI--ASGQIHLVVGTHALIQEKV-E---FKRLALVIIDEQHRFGVEQ- 373 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHH--hCCCCCEEEecHHHHhccc-c---ccccceEEEechhhccHHH-
Confidence 9999999874 46666666654432211 11111 1245789999999875422 1 3468999999999862100
Q ss_pred hhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCC
Q 043990 337 LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLP 416 (911)
Q Consensus 337 ~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP 416 (911)
. ..|..... ..
T Consensus 374 ----------r---------------------------------------------~~l~~~~~-------------~~- 384 (630)
T TIGR00643 374 ----------R---------------------------------------------KKLREKGQ-------------GG- 384 (630)
T ss_pred ----------H---------------------------------------------HHHHHhcc-------------cC-
Confidence 0 00100000 00
Q ss_pred CcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC
Q 043990 417 PKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP 496 (911)
Q Consensus 417 ~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~ 496 (911)
....++.+.-||..+.+..... ... ....+ . ..+
T Consensus 385 -~~~~~l~~SATp~prtl~l~~~----------~~l-----------------~~~~i----~--------------~~p 418 (630)
T TIGR00643 385 -FTPHVLVMSATPIPRTLALTVY----------GDL-----------------DTSII----D--------------ELP 418 (630)
T ss_pred -CCCCEEEEeCCCCcHHHHHHhc----------CCc-----------------ceeee----c--------------cCC
Confidence 0112344444543322211100 000 00000 0 000
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcch--------HHHHHHHHHHHH--cCCCEEEE
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYT--------QTLDLFAQLCRE--RRYPYLRL 566 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~--------~~ld~L~~~L~~--~gi~~~~L 566 (911)
+. +. .....+.....+-.++..+...+. .+++++||+... ..+..+...|.. .++++..+
T Consensus 419 ~~----r~----~i~~~~~~~~~~~~~~~~i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~l 488 (630)
T TIGR00643 419 PG----RK----PITTVLIKHDEKDIVYEFIEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLL 488 (630)
T ss_pred CC----CC----ceEEEEeCcchHHHHHHHHHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEE
Confidence 00 00 000000111122222333333332 478999999764 334455555554 37889999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCC-CcchHHHHHHhhhhcCCcccEEEE
Q 043990 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDW-NPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 567 dGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~W-NPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+|.|+.++|.+++++|+++..+ +|++|.+.++|+|++.++.||+++++. +-+.+.|++||++|.|..-.|+++
T Consensus 489 HG~m~~~eR~~i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~ 562 (630)
T TIGR00643 489 HGRMKSDEKEAVMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLV 562 (630)
T ss_pred eCCCCHHHHHHHHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEE
Confidence 9999999999999999986655 899999999999999999999999875 678899999999999877666543
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.84 E-value=6.8e-20 Score=226.15 Aligned_cols=311 Identities=16% Similarity=0.214 Sum_probs=199.5
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
-.+.|+|..++..+..-. ........+++-+||+|||.+++..+...+..+ ..++|+||+ .|+.|+.+
T Consensus 450 f~~T~~Q~~aI~~I~~d~----~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-------~qvlvLvPT~~LA~Q~~~ 518 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADM----ESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-------KQVAVLVPTTLLAQQHFE 518 (926)
T ss_pred CCCCHHHHHHHHHHHhhh----cccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-------CeEEEEeCcHHHHHHHHH
Confidence 458999999999987622 112234579999999999999887666555443 479999998 56688999
Q ss_pred HHHHHhCC-CeEEEEecCCcc----hhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCcc
Q 043990 261 EIKKWVGG-RVQLIALCESTR----DDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~r----~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~ 335 (911)
.|.+++.. .+.+..+++... ......+. .+..+|+|+|+..+.... ...+.++||+||+|++.-.
T Consensus 519 ~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~-----~g~~dIVIGTp~ll~~~v----~f~~L~llVIDEahrfgv~- 588 (926)
T TIGR00580 519 TFKERFANFPVTIELLSRFRSAKEQNEILKELA-----SGKIDILIGTHKLLQKDV----KFKDLGLLIIDEEQRFGVK- 588 (926)
T ss_pred HHHHHhccCCcEEEEEeccccHHHHHHHHHHHH-----cCCceEEEchHHHhhCCC----CcccCCEEEeecccccchh-
Confidence 99988764 455555544322 11222111 145789999997664321 1346899999999986210
Q ss_pred chhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccC
Q 043990 336 TLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHL 415 (911)
Q Consensus 336 s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~L 415 (911)
....+. .+
T Consensus 589 -----------------------------------------------------------~~~~L~-------------~~ 596 (926)
T TIGR00580 589 -----------------------------------------------------------QKEKLK-------------EL 596 (926)
T ss_pred -----------------------------------------------------------HHHHHH-------------hc
Confidence 000000 12
Q ss_pred CCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcC
Q 043990 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF 495 (911)
Q Consensus 416 P~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~ 495 (911)
+.. ..++.+.-||..+.++..+.. ..++.++... .......
T Consensus 597 ~~~-~~vL~~SATpiprtl~~~l~g---------------------------~~d~s~I~~~----p~~R~~V------- 637 (926)
T TIGR00580 597 RTS-VDVLTLSATPIPRTLHMSMSG---------------------------IRDLSIIATP----PEDRLPV------- 637 (926)
T ss_pred CCC-CCEEEEecCCCHHHHHHHHhc---------------------------CCCcEEEecC----CCCccce-------
Confidence 211 234445555544444322100 0011111000 0000000
Q ss_pred CcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc--CCCEEEEeCCCCHH
Q 043990 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER--RYPYLRLDGTTSIS 573 (911)
Q Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~--gi~~~~LdGsts~~ 573 (911)
. ......+.+ .+...++..+. .+.+++||++....++.+...|... ++++..+||.|+.+
T Consensus 638 --~-------------t~v~~~~~~-~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~ 699 (926)
T TIGR00580 638 --R-------------TFVMEYDPE-LVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTEN 699 (926)
T ss_pred --E-------------EEEEecCHH-HHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHH
Confidence 0 000011111 11222334443 3689999999999999999999885 78899999999999
Q ss_pred HHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCC-CCcchHHHHHHhhhhcCCcccEEEEEEEeC
Q 043990 574 KRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD-WNPANDKQAAARVWRDGQKKRVFIYRFLST 647 (911)
Q Consensus 574 ~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~-WNPa~~~QAigR~~RiGQkk~V~VyrLi~~ 647 (911)
+|.+++.+|.++..+ +|+||.+.++|||++.+++||+++++ +..+.+.|++||++|.|+.-.| |-|+..
T Consensus 700 eRe~im~~F~~Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~a--ill~~~ 769 (926)
T TIGR00580 700 ELEEVMLEFYKGEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYA--YLLYPH 769 (926)
T ss_pred HHHHHHHHHHcCCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEE--EEEECC
Confidence 999999999987655 99999999999999999999999986 4667899999999999875544 444543
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.84 E-value=6e-19 Score=214.64 Aligned_cols=313 Identities=16% Similarity=0.180 Sum_probs=193.7
Q ss_pred hhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHH
Q 043990 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNW 258 (911)
Q Consensus 180 l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW 258 (911)
+.-.|.++|.+++.-+..... .......+|.-+||+|||+.++..+...+..| .++||++|+ .|..|+
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~----~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-------~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLA----SPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-------YQAALMAPTEILAEQH 326 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhh----ccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEeccHHHHHHH
Confidence 344699999999998876321 12223569999999999999887776665543 379999999 566899
Q ss_pred HHHHHHHhCC-CeEEEEecCCcchhhh-ccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccc
Q 043990 259 EAEIKKWVGG-RVQLIALCESTRDDVV-SGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 259 ~~Ei~k~~~~-~~~v~~~~~~~r~~~~-~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
.+.+.+|++. .+.+..++++...... ..+... ..+.++|+|+|+..+.... ...+.++||+||+|++.-.
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l--~~g~~~IvVgT~~ll~~~v----~~~~l~lvVIDE~Hrfg~~-- 398 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAI--ASGEADIVIGTHALIQDDV----EFHNLGLVIIDEQHRFGVE-- 398 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHH--hCCCCCEEEchHHHhcccc----hhcccceEEEechhhhhHH--
Confidence 9999999865 4667777666542111 111111 1145789999998875322 1346889999999986110
Q ss_pred hhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCC
Q 043990 337 LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLP 416 (911)
Q Consensus 337 ~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP 416 (911)
.+ ..|.. ...+
T Consensus 399 ---------qr---------------------------------------------~~l~~---------------~~~~ 409 (681)
T PRK10917 399 ---------QR---------------------------------------------LALRE---------------KGEN 409 (681)
T ss_pred ---------HH---------------------------------------------HHHHh---------------cCCC
Confidence 00 00100 0011
Q ss_pred CcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC
Q 043990 417 PKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP 496 (911)
Q Consensus 417 ~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~ 496 (911)
+ .++...-||..+.+..... .. ..+..+ . ..+
T Consensus 410 ~---~iL~~SATp~prtl~~~~~----------g~-----------------~~~s~i----~--------------~~p 441 (681)
T PRK10917 410 P---HVLVMTATPIPRTLAMTAY----------GD-----------------LDVSVI----D--------------ELP 441 (681)
T ss_pred C---CEEEEeCCCCHHHHHHHHc----------CC-----------------CceEEE----e--------------cCC
Confidence 1 1334444443322211000 00 000000 0 000
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchH--------HHHHHHHHHHHc--CCCEEEE
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQ--------TLDLFAQLCRER--RYPYLRL 566 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~--------~ld~L~~~L~~~--gi~~~~L 566 (911)
+ ++. .....+.. ..+...+.+.+..... .+++++|||.... .+..+.+.|... ++++..+
T Consensus 442 ~----~r~----~i~~~~~~-~~~~~~~~~~i~~~~~-~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~l 511 (681)
T PRK10917 442 P----GRK----PITTVVIP-DSRRDEVYERIREEIA-KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLL 511 (681)
T ss_pred C----CCC----CcEEEEeC-cccHHHHHHHHHHHHH-cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEE
Confidence 0 000 00000111 1222233333333323 5789999998542 234455555554 5789999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCC-CcchHHHHHHhhhhcCCcccEEE
Q 043990 567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDW-NPANDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 567 dGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~W-NPa~~~QAigR~~RiGQkk~V~V 641 (911)
||.|+.++|.+++++|.++..+ +|++|.+.++|+|+++++.||+++++. ..+.+.|++||++|.|....|++
T Consensus 512 HG~m~~~eR~~i~~~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 584 (681)
T PRK10917 512 HGRMKPAEKDAVMAAFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVL 584 (681)
T ss_pred eCCCCHHHHHHHHHHHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEE
Confidence 9999999999999999986554 899999999999999999999999975 56889999999999987655544
No 53
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.6e-20 Score=206.23 Aligned_cols=380 Identities=18% Similarity=0.228 Sum_probs=220.5
Q ss_pred hhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHH
Q 043990 179 LLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSN 257 (911)
Q Consensus 179 ~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~q 257 (911)
.....++|-|...+.|++.-..- ......+-+.++.++|+|||+.-...|..++...+- ..-++|||+|+ .|+.|
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~-p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v---~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRS-PPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV---KRLRAVVIVPTRELALQ 230 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcC-CCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc---cceEEEEEeeHHHHHHH
Confidence 34567899999999999874431 222234556678999999999866666666654422 23589999998 55688
Q ss_pred HHHHHHHHhCC-CeEEEEecCCcchhh-hccCcccCCCCCCccEEEEehHHHHhhccc---cccCCCCcEEEEcCccccC
Q 043990 258 WEAEIKKWVGG-RVQLIALCESTRDDV-VSGIDSFTDPCSSLQVLIVSYETFRMHSSK---FSCSESCDLLICDEAHRLK 332 (911)
Q Consensus 258 W~~Ei~k~~~~-~~~v~~~~~~~r~~~-~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~---~~~~~~~~lVIlDEAH~lK 332 (911)
-.+.|.+|..+ .+.|....+...-+. ..++. -..+..+.+|+|+|++.+..|... |. .....++|||||.||-
T Consensus 231 V~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~-~~~~~~~~DIlVaTPGRLVDHl~~~k~f~-Lk~LrfLVIDEADRll 308 (620)
T KOG0350|consen 231 VYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLA-SDPPECRIDILVATPGRLVDHLNNTKSFD-LKHLRFLVIDEADRLL 308 (620)
T ss_pred HHHHHHHhccCCceEEEecccccchHHHHHHHh-cCCCccccceEEcCchHHHHhccCCCCcc-hhhceEEEechHHHHH
Confidence 99999999986 556655554433211 11111 112334679999999999877652 22 3456789999999994
Q ss_pred CccchhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHh
Q 043990 333 NDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLS 412 (911)
Q Consensus 333 N~~s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~ 412 (911)
+...+ +....+.++.- ..++...+..++..+ .
T Consensus 309 ~qsfQ-------~Wl~~v~~~~~--------------------------------~~k~~~~~~nii~~~-----~---- 340 (620)
T KOG0350|consen 309 DQSFQ-------EWLDTVMSLCK--------------------------------TMKRVACLDNIIRQR-----Q---- 340 (620)
T ss_pred HHHHH-------HHHHHHHHHhC--------------------------------CchhhcChhhhhhhc-----c----
Confidence 42211 11111111000 000000011111100 0
Q ss_pred ccCCCcEEEEEEecCCHHHHHHHH---HHHHhHHHHHHhhhhhhHhhHHHHHHHHHHH-hcChhhhHhhhhcCCCCCCCc
Q 043990 413 NHLPPKIIEVVCCKLTPLQSELYN---HFIHSKNVKRAISEETKQSKILAYITALKKL-CNHPKLIYDTIKSGNPGTTGF 488 (911)
Q Consensus 413 ~~LP~k~~~vv~~~ls~~Q~~lY~---~~l~~~~~~~~~~~~~~~~~~l~~l~~Lrkl-cnhP~Ll~~~~~~~~~~~~~~ 488 (911)
-| ...-++..+..+|+ .++. ... ...+.+.-..|..+ ..+|.++.-...
T Consensus 341 --~~------~pt~~~e~~t~~~~~~~~l~k-----L~~-----satLsqdP~Kl~~l~l~~Prl~~v~~~--------- 393 (620)
T KOG0350|consen 341 --AP------QPTVLSELLTKLGKLYPPLWK-----LVF-----SATLSQDPSKLKDLTLHIPRLFHVSKP--------- 393 (620)
T ss_pred --cC------CchhhHHHHhhcCCcCchhHh-----hhc-----chhhhcChHHHhhhhcCCCceEEeecc---------
Confidence 00 00001111111111 1000 000 00000011112222 134444321100
Q ss_pred chhhhc-CCcccccCCCCCCCCCCCcccccc--hHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHH----HcCC
Q 043990 489 EDCIRF-FPPEMFSGRSGSWTGGDGAWVELS--GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCR----ERRY 561 (911)
Q Consensus 489 ~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~S--~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~----~~gi 561 (911)
....+ +|+.+ . ...+-.. -|-..+..++... ...++|+|++.......+...|+ ....
T Consensus 394 -~~~ryslp~~l-~----------~~~vv~~~~~kpl~~~~lI~~~---k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 394 -LIGRYSLPSSL-S----------HRLVVTEPKFKPLAVYALITSN---KLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred -cceeeecChhh-h----------hceeecccccchHhHHHHHHHh---hcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 00000 01100 0 0011112 2344556666654 46899999999999888888877 3356
Q ss_pred CEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEE
Q 043990 562 PYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 562 ~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~V 641 (911)
++..++|+.+.+.|.+++.+|+.++.. +||+++++++|+|+.+.+.||+||||-.-..|.+|+||..|.||.-.+
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a-- 533 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYA-- 533 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceE--
Confidence 677799999999999999999986554 999999999999999999999999999999999999999999998644
Q ss_pred EEEEeCCCHHHHHHHHHHHH
Q 043990 642 YRFLSTGTIEEKVYQRQMSK 661 (911)
Q Consensus 642 yrLi~~gTIEEkI~~rq~~K 661 (911)
|.++.. -|++.|-...+|
T Consensus 534 ~tll~~--~~~r~F~klL~~ 551 (620)
T KOG0350|consen 534 ITLLDK--HEKRLFSKLLKK 551 (620)
T ss_pred EEeecc--ccchHHHHHHHH
Confidence 444443 245555555444
No 54
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.83 E-value=2.1e-19 Score=223.79 Aligned_cols=106 Identities=13% Similarity=0.044 Sum_probs=93.3
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHc------CCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCC
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRER------RYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGG 608 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~------gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~A 608 (911)
.++++||||+.+..++.+...|... +..+..+||+++.++|..+.++|+++.. .+|++|.+++.|||+...
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i---~vLVaTs~Le~GIDip~V 359 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGEL---KVVVSSTSLELGIDIGYI 359 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCC---eEEEECChHHhcCCCCCC
Confidence 3689999999999999999988763 4678999999999999999999998654 489999999999999999
Q ss_pred CEEEEeCCCCCcchHHHHHHhhhhc-CCcccEEEEE
Q 043990 609 NRLVLFDPDWNPANDKQAAARVWRD-GQKKRVFIYR 643 (911)
Q Consensus 609 n~VIl~Dp~WNPa~~~QAigR~~Ri-GQkk~V~Vyr 643 (911)
+.||+|++|.+.+.+.||+||++|. |+.....++-
T Consensus 360 d~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 360 DLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred cEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999999999999999976 5555555554
No 55
>PRK02362 ski2-like helicase; Provisional
Probab=99.83 E-value=1.7e-18 Score=213.22 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=89.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHc------------------------------------CCCEEEEeCCCCHHHHHHH
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRER------------------------------------RYPYLRLDGTTSISKRQKL 578 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~------------------------------------gi~~~~LdGsts~~~R~~i 578 (911)
.+.++|||++.+.....++..|... ...+..++|+++..+|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 4689999999998877776665432 1357889999999999999
Q ss_pred HHhhcCCCCCceEEEEecCCcccccCCCCCCEEEE----eC-----CCCCcchHHHHHHhhhhcCCcccEEEEEEEeC
Q 043990 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL----FD-----PDWNPANDKQAAARVWRDGQKKRVFIYRFLST 647 (911)
Q Consensus 579 v~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl----~D-----p~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~ 647 (911)
.+.|+++.. .+|++|.+++.|+|+++...||. || .+.++..+.|++||++|.|....-.+|-+...
T Consensus 322 e~~Fr~G~i---~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 322 EDAFRDRLI---KVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred HHHHHcCCC---eEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 999998544 49999999999999999887776 77 46788999999999999998766555555543
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.83 E-value=1.2e-18 Score=219.63 Aligned_cols=309 Identities=15% Similarity=0.203 Sum_probs=195.9
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch-hhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS-LVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s-Ll~qW~~ 260 (911)
-.+.|.|.+++.-+..-. ........+++.+||+|||.+++..+...+.. ..++||+||+. |..|..+
T Consensus 599 ~~~T~~Q~~aI~~il~d~----~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-------g~qvlvLvPT~eLA~Q~~~ 667 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDM----CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-------HKQVAVLVPTTLLAQQHYD 667 (1147)
T ss_pred CCCCHHHHHHHHHHHHHh----hcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-------CCeEEEEeCcHHHHHHHHH
Confidence 368899999999876521 12233567999999999999887555444332 24799999995 5588888
Q ss_pred HHHHHhCC-CeEEEEecCCcch-hhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchh
Q 043990 261 EIKKWVGG-RVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~r~-~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
.+.+++.. .+.+..+.+.... +....+... ..+..+|+|+|++.+.... ....+++||+||+|++...
T Consensus 668 ~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l--~~g~~dIVVgTp~lL~~~v----~~~~L~lLVIDEahrfG~~---- 737 (1147)
T PRK10689 668 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEA--AEGKIDILIGTHKLLQSDV----KWKDLGLLIVDEEHRFGVR---- 737 (1147)
T ss_pred HHHHhhccCCceEEEEECCCCHHHHHHHHHHH--HhCCCCEEEECHHHHhCCC----CHhhCCEEEEechhhcchh----
Confidence 88887653 3444444333221 111111111 1135689999998775322 1346899999999997110
Q ss_pred ccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc
Q 043990 339 NRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK 418 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k 418 (911)
+ ...+ +.+|+.
T Consensus 738 -------------------------~-------------------------------~e~l-------------k~l~~~ 748 (1147)
T PRK10689 738 -------------------------H-------------------------------KERI-------------KAMRAD 748 (1147)
T ss_pred -------------------------H-------------------------------HHHH-------------HhcCCC
Confidence 0 0000 012222
Q ss_pred EEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcc
Q 043990 419 IIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498 (911)
Q Consensus 419 ~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e 498 (911)
..++...-||..+.++.... ...+|..+.. .+... .+-.
T Consensus 749 -~qvLl~SATpiprtl~l~~~---------------------------gl~d~~~I~~-----~p~~r--------~~v~ 787 (1147)
T PRK10689 749 -VDILTLTATPIPRTLNMAMS---------------------------GMRDLSIIAT-----PPARR--------LAVK 787 (1147)
T ss_pred -CcEEEEcCCCCHHHHHHHHh---------------------------hCCCcEEEec-----CCCCC--------CCce
Confidence 23445555554444332110 0011111100 00000 0000
Q ss_pred cccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHH
Q 043990 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER--RYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~--gi~~~~LdGsts~~~R~ 576 (911)
....... .......++.++.. +.+++||++.+..++.+...|... ++++..+||.|+.++|.
T Consensus 788 -------------~~~~~~~-~~~~k~~il~el~r--~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe 851 (1147)
T PRK10689 788 -------------TFVREYD-SLVVREAILREILR--GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELE 851 (1147)
T ss_pred -------------EEEEecC-cHHHHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHH
Confidence 0000001 11122344555543 678999999999999999999887 78999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCC-CCcchHHHHHHhhhhcCCcccEE
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD-WNPANDKQAAARVWRDGQKKRVF 640 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~-WNPa~~~QAigR~~RiGQkk~V~ 640 (911)
+++.+|.++..+ +|++|.+.++|||++.+++||+.+++ |..+.+.|++||++|.|++-.|+
T Consensus 852 ~im~~Fr~Gk~~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 852 RVMNDFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred HHHHHHHhcCCC---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEE
Confidence 999999987655 89999999999999999999988775 67889999999999998775544
No 57
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.2e-19 Score=186.66 Aligned_cols=319 Identities=19% Similarity=0.231 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHH-HHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQ-SIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKK 264 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlq-aIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k 264 (911)
..|..|+.-++. .+.+|....-|+|||.+ +|+++-.+-- ......+||+.|+.-+.....+.-.
T Consensus 52 ~IQqrAi~~Ilk----------GrdViaQaqSGTGKTa~~si~vlq~~d~-----~~r~tQ~lilsPTRELa~Qi~~vi~ 116 (400)
T KOG0328|consen 52 AIQQRAIPQILK----------GRDVIAQAQSGTGKTATFSISVLQSLDI-----SVRETQALILSPTRELAVQIQKVIL 116 (400)
T ss_pred HHHhhhhhhhhc----------ccceEEEecCCCCceEEEEeeeeeeccc-----ccceeeEEEecChHHHHHHHHHHHH
Confidence 568888887753 46778888999999976 3444322211 1122468999999777655555555
Q ss_pred HhCC--CeEEEEe-cCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccchhcc
Q 043990 265 WVGG--RVQLIAL-CESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTLTNR 340 (911)
Q Consensus 265 ~~~~--~~~v~~~-~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~~~~ 340 (911)
-++. ++.+.+- +|.+-.+.++.++ ...+||.-|++++-.... .-.......++|+|||..+-|...
T Consensus 117 alg~~mnvq~hacigg~n~gedikkld------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgf---- 186 (400)
T KOG0328|consen 117 ALGDYMNVQCHACIGGKNLGEDIKKLD------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGF---- 186 (400)
T ss_pred HhcccccceEEEEecCCccchhhhhhc------ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhH----
Confidence 5554 3444433 3333222222222 234688888877632221 122245788999999998844211
Q ss_pred CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcE-
Q 043990 341 NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKI- 419 (911)
Q Consensus 341 N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~- 419 (911)
+ ..+. ++..+|||-.
T Consensus 187 ------------------------k---------------------------~Qiy-------------diyr~lp~~~Q 202 (400)
T KOG0328|consen 187 ------------------------K---------------------------EQIY-------------DIYRYLPPGAQ 202 (400)
T ss_pred ------------------------H---------------------------HHHH-------------HHHHhCCCCce
Confidence 0 1111 1222677654
Q ss_pred EEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCccc
Q 043990 420 IEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEM 499 (911)
Q Consensus 420 ~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (911)
..++...|+..-.++-+.|+. +|.-++..- .....+....++-.
T Consensus 203 vv~~SATlp~eilemt~kfmt-----------------------------dpvrilvkr-----deltlEgIKqf~v~-- 246 (400)
T KOG0328|consen 203 VVLVSATLPHEILEMTEKFMT-----------------------------DPVRILVKR-----DELTLEGIKQFFVA-- 246 (400)
T ss_pred EEEEeccCcHHHHHHHHHhcC-----------------------------CceeEEEec-----CCCchhhhhhheee--
Confidence 334455566554444444322 221111000 00000000000000
Q ss_pred ccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Q 043990 500 FSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLV 579 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv 579 (911)
.....=|...|..|-..+- =...||||+.+...++|.+.++...+.+..+||.|++++|.+++
T Consensus 247 --------------ve~EewKfdtLcdLYd~Lt---ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im 309 (400)
T KOG0328|consen 247 --------------VEKEEWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIM 309 (400)
T ss_pred --------------echhhhhHhHHHHHhhhhe---hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHH
Confidence 0001226777777766653 36899999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 043990 580 NHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIE 651 (911)
Q Consensus 580 ~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIE 651 (911)
+.|+.+.+. +||+|++-++|++++..+.||+||.|-|+..|++|+||.+|.|.+- .+..|+....++
T Consensus 310 ~dFRsg~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~~ 376 (400)
T KOG0328|consen 310 NDFRSGKSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDLR 376 (400)
T ss_pred HHhhcCCce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHHHH
Confidence 999997765 8999999999999999999999999999999999999999999664 445667655443
No 58
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.6e-18 Score=189.70 Aligned_cols=320 Identities=17% Similarity=0.238 Sum_probs=202.7
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHH-hcCCCCCCCCceEEEEeCchhhHHHHH---
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLL-CQGFDGKPMVKKAIIVTPTSLVSNWEA--- 260 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll-~~g~~~~p~~~~~LIV~P~sLl~qW~~--- 260 (911)
-|-|..++..++. ..-++.-..||+|||+..+..+...+ ++.....|..--.|||.|+.-+.-...
T Consensus 30 TpVQa~tIPlll~----------~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~ 99 (567)
T KOG0345|consen 30 TPVQAATIPLLLK----------NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVA 99 (567)
T ss_pred CHHHHhhhHHHhc----------CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHH
Confidence 3889999998863 34567778899999999988888776 333333333236899999965543333
Q ss_pred -HHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc---cccCCCCcEEEEcCccccCCccc
Q 043990 261 -EIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK---FSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 261 -Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~---~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
.|..+++.-...+.++|.+-.+....+. . ..+.|+|.|++.+...... ........++|+|||.++-.-..
T Consensus 100 ~~F~~~l~~l~~~l~vGG~~v~~Di~~fk---e--e~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgF 174 (567)
T KOG0345|consen 100 QPFLEHLPNLNCELLVGGRSVEEDIKTFK---E--EGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGF 174 (567)
T ss_pred HHHHHhhhccceEEEecCccHHHHHHHHH---H--hCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccH
Confidence 3334444322334444444333333322 1 3467999999987433322 12244678999999999843211
Q ss_pred hhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCC
Q 043990 337 LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLP 416 (911)
Q Consensus 337 ~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP 416 (911)
...++.++. .||
T Consensus 175 -------------------------------------------------------e~~~n~ILs-------------~LP 186 (567)
T KOG0345|consen 175 -------------------------------------------------------EASVNTILS-------------FLP 186 (567)
T ss_pred -------------------------------------------------------HHHHHHHHH-------------hcc
Confidence 122333333 355
Q ss_pred CcEEEE-EEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcC
Q 043990 417 PKIIEV-VCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF 495 (911)
Q Consensus 417 ~k~~~v-v~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~ 495 (911)
.....- ....++....++....+. +|..+.-..+.... .
T Consensus 187 KQRRTGLFSATq~~~v~dL~raGLR-----------------------------Npv~V~V~~k~~~~-----------t 226 (567)
T KOG0345|consen 187 KQRRTGLFSATQTQEVEDLARAGLR-----------------------------NPVRVSVKEKSKSA-----------T 226 (567)
T ss_pred cccccccccchhhHHHHHHHHhhcc-----------------------------Cceeeeeccccccc-----------C
Confidence 432221 112222222222221111 11111000000000 0
Q ss_pred CcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc--CCCEEEEeCCCCHH
Q 043990 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER--RYPYLRLDGTTSIS 573 (911)
Q Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~--gi~~~~LdGsts~~ 573 (911)
|... ...-..+...-|+..|.++|... ..+|+|||...-...++....|... +..++.+||.|+++
T Consensus 227 PS~L---------~~~Y~v~~a~eK~~~lv~~L~~~---~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~ 294 (567)
T KOG0345|consen 227 PSSL---------ALEYLVCEADEKLSQLVHLLNNN---KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQK 294 (567)
T ss_pred chhh---------cceeeEecHHHHHHHHHHHHhcc---ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcch
Confidence 0000 00001123456888888888763 5689999999989999998888765 67899999999999
Q ss_pred HHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 574 KRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 574 ~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
.|.+++..|.+.... +|++|+++++|||+++.+.||.||||-+|..+.+|.||+.|.|..-.-.|+
T Consensus 295 ~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 295 ARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred hHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 999999999984433 899999999999999999999999999999999999999999988766554
No 59
>PRK01172 ski2-like helicase; Provisional
Probab=99.80 E-value=9.5e-18 Score=205.16 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=84.4
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHc-------------------------CCCEEEEeCCCCHHHHHHHHHhhcCCCCCc
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRER-------------------------RYPYLRLDGTTSISKRQKLVNHFNDPSKNE 589 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~-------------------------gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~ 589 (911)
.+.++|||++.+.....++..|... ...+..++|+++.++|..+.+.|+++..
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i-- 312 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYI-- 312 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCC--
Confidence 4678999999988877777666542 1246778999999999999999998544
Q ss_pred eEEEEecCCcccccCCCCCCEEEEeCC---------CCCcchHHHHHHhhhhcCCcccEEEEEEE
Q 043990 590 FVFLLSSKAGGCGLNLIGGNRLVLFDP---------DWNPANDKQAAARVWRDGQKKRVFIYRFL 645 (911)
Q Consensus 590 ~v~LlStkagg~GLNL~~An~VIl~Dp---------~WNPa~~~QAigR~~RiGQkk~V~VyrLi 645 (911)
.+|++|.+++.|+|+++ .+||+++. ++++..+.|++||++|.|.......+-++
T Consensus 313 -~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 313 -KVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYA 375 (674)
T ss_pred -eEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEe
Confidence 48999999999999986 67888764 35777889999999999977664433333
No 60
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.80 E-value=6.6e-19 Score=194.07 Aligned_cols=312 Identities=18% Similarity=0.225 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC-CCCCCCCceEEEEeCchhh-HHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG-FDGKPMVKKAIIVTPTSLV-SNWEAEIK 263 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g-~~~~p~~~~~LIV~P~sLl-~qW~~Ei~ 263 (911)
+-|...+.-++. ..-++.+.-+|+|||+..+..++.++... +..+ ..-.+|||||+.-+ .|-..|++
T Consensus 107 ~VQ~~ti~pll~----------gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlIi~PTRELA~Q~~~eak 175 (543)
T KOG0342|consen 107 PVQQKTIPPLLE----------GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLIICPTRELAMQIFAEAK 175 (543)
T ss_pred HHHHhhcCccCC----------CccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEEecccHHHHHHHHHHHH
Confidence 678877765532 23667888999999999887777665544 3333 24469999999655 55555655
Q ss_pred HHhC---CCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcccccc--CCCCcEEEEcCccccCCccchh
Q 043990 264 KWVG---GRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSC--SESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 264 k~~~---~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~--~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
+.+. .....++++|..+......+. ....++|+|++.|..+...-.. .....++|+|||.++-...
T Consensus 176 ~Ll~~h~~~~v~~viGG~~~~~e~~kl~------k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~G--- 246 (543)
T KOG0342|consen 176 ELLKYHESITVGIVIGGNNFSVEADKLV------KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIG--- 246 (543)
T ss_pred HHHhhCCCcceEEEeCCccchHHHHHhh------ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcc---
Confidence 5443 222334445544433222222 2567999999999766542110 2234689999999982211
Q ss_pred ccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc
Q 043990 339 NRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK 418 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k 418 (911)
|. .++..+++ -||..
T Consensus 247 -------------------------F~---------------------------~di~~Ii~-------------~lpk~ 261 (543)
T KOG0342|consen 247 -------------------------FE---------------------------EDVEQIIK-------------ILPKQ 261 (543)
T ss_pred -------------------------cH---------------------------HHHHHHHH-------------hcccc
Confidence 11 23333433 34533
Q ss_pred EE-EEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 419 II-EVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 419 ~~-~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
.. ..+...+++..+++.+-.+.. .|..+. ....+. +
T Consensus 262 rqt~LFSAT~~~kV~~l~~~~L~~----------------------------d~~~v~-~~d~~~--------------~ 298 (543)
T KOG0342|consen 262 RQTLLFSATQPSKVKDLARGALKR----------------------------DPVFVN-VDDGGE--------------R 298 (543)
T ss_pred ceeeEeeCCCcHHHHHHHHHhhcC----------------------------CceEee-cCCCCC--------------c
Confidence 32 233345555544444332111 111110 000000 0
Q ss_pred ccccCCCCCCCCCCC-c-ccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Q 043990 498 EMFSGRSGSWTGGDG-A-WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKR 575 (911)
Q Consensus 498 e~~~~~~~~~~~~~~-~-~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R 575 (911)
+.. .+... . ......++..|..+|+.... ..|||||+..-.+..++..+|+...+++..|||..++.+|
T Consensus 299 ~Th-------e~l~Qgyvv~~~~~~f~ll~~~LKk~~~--~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kR 369 (543)
T KOG0342|consen 299 ETH-------ERLEQGYVVAPSDSRFSLLYTFLKKNIK--RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKR 369 (543)
T ss_pred chh-------hcccceEEeccccchHHHHHHHHHHhcC--CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCccccc
Confidence 000 00000 0 11224456777788877653 3899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcc
Q 043990 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637 (911)
Q Consensus 576 ~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk 637 (911)
..+..+|.+..+. +|++|+++++|+|++..+.||-||||-+|..|++|+||.+|-|-+-
T Consensus 370 T~~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G 428 (543)
T KOG0342|consen 370 TSTFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEG 428 (543)
T ss_pred chHHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCc
Confidence 9999999986665 9999999999999999999999999999999999999999976553
No 61
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=7.6e-19 Score=196.79 Aligned_cols=324 Identities=19% Similarity=0.289 Sum_probs=212.3
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHH-HHhcCCC-----CCCCCceEEEEeCc-hhhH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT-LLCQGFD-----GKPMVKKAIIVTPT-SLVS 256 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~-ll~~g~~-----~~p~~~~~LIV~P~-sLl~ 256 (911)
.-|+|+-++.-+. ..++.+.+..+|+|||...+.-+.. ++..++. ..+....+||++|+ .|+.
T Consensus 97 ptpvQk~sip~i~----------~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~ 166 (482)
T KOG0335|consen 97 PTPVQKYSIPIIS----------GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVD 166 (482)
T ss_pred CCcceeeccceee----------cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhh
Confidence 3389999987653 3467788899999999987765554 4444431 22224579999999 6789
Q ss_pred HHHHHHHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc--ccccCCCCcEEEEcCccccCC
Q 043990 257 NWEAEIKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS--KFSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 257 qW~~Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~--~~~~~~~~~lVIlDEAH~lKN 333 (911)
|-.+|..|+... .+....++++.. ...... .....++|+++|...+..... .+. .....++|||||.++-.
T Consensus 167 Qi~nea~k~~~~s~~~~~~~ygg~~--~~~q~~---~~~~gcdIlvaTpGrL~d~~e~g~i~-l~~~k~~vLDEADrMlD 240 (482)
T KOG0335|consen 167 QIYNEARKFSYLSGMKSVVVYGGTD--LGAQLR---FIKRGCDILVATPGRLKDLIERGKIS-LDNCKFLVLDEADRMLD 240 (482)
T ss_pred HHHHHHHhhcccccceeeeeeCCcc--hhhhhh---hhccCccEEEecCchhhhhhhcceee-hhhCcEEEecchHHhhh
Confidence 999999999875 455555555522 111111 112468999999999865443 222 45677999999999832
Q ss_pred ccchhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhc
Q 043990 334 DQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSN 413 (911)
Q Consensus 334 ~~s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~ 413 (911)
+ +.|- ..++.++...
T Consensus 241 -----------~----mgF~---------------------------------------p~Ir~iv~~~----------- 255 (482)
T KOG0335|consen 241 -----------E----MGFE---------------------------------------PQIRKIVEQL----------- 255 (482)
T ss_pred -----------h----cccc---------------------------------------ccHHHHhccc-----------
Confidence 1 1110 1122222110
Q ss_pred cCCC-cEEEEE--EecCCH-HHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcc
Q 043990 414 HLPP-KIIEVV--CCKLTP-LQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFE 489 (911)
Q Consensus 414 ~LP~-k~~~vv--~~~ls~-~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~ 489 (911)
..|+ ...+.+ ...+.. .|+ +-..|+... +.+ +.-+.-
T Consensus 256 ~~~~~~~~qt~mFSAtfp~~iq~-l~~~fl~~~-----------------------------yi~---laV~rv------ 296 (482)
T KOG0335|consen 256 GMPPKNNRQTLLFSATFPKEIQR-LAADFLKDN-----------------------------YIF---LAVGRV------ 296 (482)
T ss_pred CCCCccceeEEEEeccCChhhhh-hHHHHhhcc-----------------------------ceE---EEEeee------
Confidence 1222 122222 222222 222 222221110 000 000000
Q ss_pred hhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhc------CCCeEEEEEcchHHHHHHHHHHHHcCCCE
Q 043990 490 DCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQR------TDDRIVLVSNYTQTLDLFAQLCRERRYPY 563 (911)
Q Consensus 490 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~------~~~KVIIFSq~~~~ld~L~~~L~~~gi~~ 563 (911)
+.........-.|+....|...|.++|...... ..++++||++.++.++.++.+|...++++
T Consensus 297 ------------g~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~ 364 (482)
T KOG0335|consen 297 ------------GSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPA 364 (482)
T ss_pred ------------ccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCc
Confidence 000000001123455677888888888765421 12499999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 564 LRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 564 ~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
..++|..++.+|.+.++.|+++... +|++|.++++|||+.+..+||+||.|-+-..|.+||||++|.|+.-..+.+
T Consensus 365 ~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 365 KSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred eeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 9999999999999999999997666 899999999999999999999999999999999999999999998665554
No 62
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.80 E-value=2.4e-18 Score=190.97 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=91.5
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeC
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFD 615 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~D 615 (911)
..|.|||||..+.+..|.-+|+..+++...||..|.+++|.+.+++|.+... .+||+|+++++|||+++..|||+|.
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~---~VLiaTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS---GVLIATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC---eEEEeehhhhccCCCCCcceEEEee
Confidence 4689999999999999999999999999999999999999999999998443 4999999999999999999999999
Q ss_pred CCCCcchHHHHHHhhhhcCC
Q 043990 616 PDWNPANDKQAAARVWRDGQ 635 (911)
Q Consensus 616 p~WNPa~~~QAigR~~RiGQ 635 (911)
.|-.-..|.+|-||..|.+.
T Consensus 540 VPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 540 VPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred cCCccceeEecccccccccC
Confidence 99999999999999999874
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.79 E-value=6.1e-18 Score=191.68 Aligned_cols=133 Identities=19% Similarity=0.303 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCC--EEEEeCCCCHHHHHH----HHHhhcCCCCCceEE
Q 043990 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP--YLRLDGTTSISKRQK----LVNHFNDPSKNEFVF 592 (911)
Q Consensus 519 ~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~--~~~LdGsts~~~R~~----iv~~Fn~~~~~~~v~ 592 (911)
.|...+..++..+. .+.++|||++....++.+...|...+.. +..++|.++..+|.+ +++.|.++.. .+
T Consensus 207 ~~~~~l~~l~~~~~--~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~---~i 281 (358)
T TIGR01587 207 GEISSLERLLEFIK--KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEK---FV 281 (358)
T ss_pred cCHHHHHHHHHHhh--CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCC---eE
Confidence 45666777776554 4689999999999999999999988764 899999999999976 4889987443 48
Q ss_pred EEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcc----cEEEEEEEeCC---CHHHHHHHHHH
Q 043990 593 LLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK----RVFIYRFLSTG---TIEEKVYQRQM 659 (911)
Q Consensus 593 LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk----~V~VyrLi~~g---TIEEkI~~rq~ 659 (911)
|++|.++++|+|+ .++.||.++.+ +..+.|++||++|.|.+. .|+||.....+ ..+.+++++-.
T Consensus 282 lvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~ 352 (358)
T TIGR01587 282 IVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTI 352 (358)
T ss_pred EEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHH
Confidence 9999999999999 58999988765 789999999999999764 46666655444 34455555443
No 64
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.79 E-value=8.3e-18 Score=186.60 Aligned_cols=333 Identities=17% Similarity=0.212 Sum_probs=214.8
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHH-HHHhcCCCCCCCCceEEEEeCchhh-HHHHHHH
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY-TLLCQGFDGKPMVKKAIIVTPTSLV-SNWEAEI 262 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~-~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~Ei 262 (911)
-..|+.+|...+. ++-+|=|.-+|+|||+..+..++ .|.+.+....- .--+|||.|+.-+ .|--.-+
T Consensus 93 teiQ~~~Ip~aL~----------G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~D-GlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 93 TEIQRDTIPMALQ----------GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTD-GLGALIISPTRELALQTFEVL 161 (758)
T ss_pred HHHHHhhcchhcc----------CcccccccccCCCceeeehHHHHHHHHHcCCCCCC-CceeEEecchHHHHHHHHHHH
Confidence 3779999988753 24545578899999998766544 34444322111 2248999999655 4544444
Q ss_pred HHH---hCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCCccch
Q 043990 263 KKW---VGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 263 ~k~---~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
.+. .....- +.++|..-......+ ....|+|+|++.+..|... ........++|+|||.++-...
T Consensus 162 ~kvgk~h~fSaG-LiiGG~~~k~E~eRi-------~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMG-- 231 (758)
T KOG0343|consen 162 NKVGKHHDFSAG-LIIGGKDVKFELERI-------SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMG-- 231 (758)
T ss_pred HHHhhccccccc-eeecCchhHHHHHhh-------hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHh--
Confidence 443 322222 333444332222222 3457999999999777653 2224567899999999982211
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPP 417 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~ 417 (911)
|+ ..|..++. +||+
T Consensus 232 --------------------------Fk---------------------------~tL~~Ii~-------------~lP~ 245 (758)
T KOG0343|consen 232 --------------------------FK---------------------------KTLNAIIE-------------NLPK 245 (758)
T ss_pred --------------------------HH---------------------------HHHHHHHH-------------hCCh
Confidence 11 22333333 7888
Q ss_pred cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 418 KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 418 k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
+.....+ |..|..-...+ +|-...+|..+.-.... ..+ +|.
T Consensus 246 ~RQTLLF---SATqt~svkdL-------------------------aRLsL~dP~~vsvhe~a----~~a-------tP~ 286 (758)
T KOG0343|consen 246 KRQTLLF---SATQTKSVKDL-------------------------ARLSLKDPVYVSVHENA----VAA-------TPS 286 (758)
T ss_pred hheeeee---ecccchhHHHH-------------------------HHhhcCCCcEEEEeccc----ccc-------Chh
Confidence 7665554 22222222111 11112344333111000 000 000
Q ss_pred ccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc--CCCEEEEeCCCCHHHH
Q 043990 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER--RYPYLRLDGTTSISKR 575 (911)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~--gi~~~~LdGsts~~~R 575 (911)
.. . ..-..+....|+.+|...+.... ..|.|||...-..+.++...|... |++...|+|.|++..|
T Consensus 287 ~L-~--------Q~y~~v~l~~Ki~~L~sFI~shl---k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R 354 (758)
T KOG0343|consen 287 NL-Q--------QSYVIVPLEDKIDMLWSFIKSHL---KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKR 354 (758)
T ss_pred hh-h--------heEEEEehhhHHHHHHHHHHhcc---ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHH
Confidence 00 0 00112345789999999888754 578999988888888888877765 8999999999999999
Q ss_pred HHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHH
Q 043990 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVY 655 (911)
Q Consensus 576 ~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~ 655 (911)
..+..+|... ..++|.+|+++++||+++..+.||-||.|-+-..|++|+||+.|.+-.-...+| ..-+-||.++
T Consensus 355 ~ev~~~F~~~---~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~---L~psEeE~~l 428 (758)
T KOG0343|consen 355 IEVYKKFVRK---RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM---LTPSEEEAML 428 (758)
T ss_pred HHHHHHHHHh---cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE---EcchhHHHHH
Confidence 9999999872 337999999999999999999999999999999999999999999988887765 3445567877
Q ss_pred HHHHHH
Q 043990 656 QRQMSK 661 (911)
Q Consensus 656 ~rq~~K 661 (911)
.++..|
T Consensus 429 ~~Lq~k 434 (758)
T KOG0343|consen 429 KKLQKK 434 (758)
T ss_pred HHHHHc
Confidence 777666
No 65
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=2.5e-17 Score=182.40 Aligned_cols=129 Identities=22% Similarity=0.385 Sum_probs=101.3
Q ss_pred chHHH--HHHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHHHc----------------------CCCEEEEeCCCCH
Q 043990 518 SGKMH--VLARLLGHLR-QRTDDRIVLVSNYTQTLDLFAQLCRER----------------------RYPYLRLDGTTSI 572 (911)
Q Consensus 518 S~Kl~--~L~~LL~~l~-~~~~~KVIIFSq~~~~ld~L~~~L~~~----------------------gi~~~~LdGsts~ 572 (911)
.+|+. .|..+|.... .....|+|||....++++.=..+|... +.++.+|+|+|.+
T Consensus 404 PpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Q 483 (708)
T KOG0348|consen 404 PPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQ 483 (708)
T ss_pred CCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhH
Confidence 44543 4555554433 234569999999998887666665431 4569999999999
Q ss_pred HHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 043990 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIE 651 (911)
Q Consensus 573 ~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIE 651 (911)
++|..+...|..... .+|++|+++++||||+....||-||||..++.|.+|+||..|+|-+-.-.. |+...-.|
T Consensus 484 eeRts~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae 557 (708)
T KOG0348|consen 484 EERTSVFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE 557 (708)
T ss_pred HHHHHHHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH
Confidence 999999999997433 499999999999999999999999999999999999999999998866544 34444444
No 66
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.78 E-value=6.8e-18 Score=203.18 Aligned_cols=120 Identities=19% Similarity=0.275 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH-----HHHHhhcC----CC----
Q 043990 520 KMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ-----KLVNHFND----PS---- 586 (911)
Q Consensus 520 Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~-----~iv~~Fn~----~~---- 586 (911)
|+..+...+..+....+.++|||++.++.++.+...|...++ ..|+|.+++.+|. +++++|.. +.
T Consensus 256 Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~ 333 (844)
T TIGR02621 256 FLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARP 333 (844)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccc
Confidence 444433333333333568999999999999999999998887 8999999999999 78999976 22
Q ss_pred CCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCccc--EEEEEE
Q 043990 587 KNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR--VFIYRF 644 (911)
Q Consensus 587 ~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~--V~VyrL 644 (911)
.+...+|++|+++++|||+.. ++||++..++ ..|+||+||++|.|.+.. ++++.+
T Consensus 334 ~~g~~ILVATdVaerGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 334 QQGTVYLVCTSAGEVGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccceEEeccchhhhcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 112468999999999999975 9999987764 799999999999998644 444433
No 67
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=6.5e-18 Score=179.33 Aligned_cols=314 Identities=18% Similarity=0.177 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~ 265 (911)
|.|..+|..+++ ++.||=+.-+|+|||......+..-+... |..-=.||++|+.-+.-...|=-.+
T Consensus 32 piQ~~cIpkILe----------Grdcig~AkTGsGKT~AFaLPil~rLsed----P~giFalvlTPTrELA~QiaEQF~a 97 (442)
T KOG0340|consen 32 PIQQACIPKILE----------GRDCIGCAKTGSGKTAAFALPILNRLSED----PYGIFALVLTPTRELALQIAEQFIA 97 (442)
T ss_pred chHhhhhHHHhc----------ccccccccccCCCcchhhhHHHHHhhccC----CCcceEEEecchHHHHHHHHHHHHH
Confidence 889999998864 36778889999999988666666655554 3344689999997776555555555
Q ss_pred hCC--CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccc-----cCCCCcEEEEcCccccCCccchh
Q 043990 266 VGG--RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFS-----CSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 266 ~~~--~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~-----~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
++. .+++.++.|+...-. . -..-..+++|||+|++.+..+...-. -..+..++|+|||.++-+...
T Consensus 98 lGk~l~lK~~vivGG~d~i~-q----a~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f-- 170 (442)
T KOG0340|consen 98 LGKLLNLKVSVIVGGTDMIM-Q----AAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCF-- 170 (442)
T ss_pred hcccccceEEEEEccHHHhh-h----hhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccch--
Confidence 553 455555555543211 1 11123568999999999865443211 023456899999999844311
Q ss_pred ccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc
Q 043990 339 NRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK 418 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k 418 (911)
. +.|..+. .-+|++
T Consensus 171 --------------------------~---------------------------d~L~~i~-------------e~lP~~ 184 (442)
T KOG0340|consen 171 --------------------------P---------------------------DILEGIE-------------ECLPKP 184 (442)
T ss_pred --------------------------h---------------------------hHHhhhh-------------ccCCCc
Confidence 0 1122221 247776
Q ss_pred -EEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 419 -IIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 419 -~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
........++..-+++...-.+. +..+......+.+ .. +.+.
T Consensus 185 RQtLlfSATitd~i~ql~~~~i~k-----------------------------~~a~~~e~~~~vs---tv----etL~- 227 (442)
T KOG0340|consen 185 RQTLLFSATITDTIKQLFGCPITK-----------------------------SIAFELEVIDGVS---TV----ETLY- 227 (442)
T ss_pred cceEEEEeehhhHHHHhhcCCccc-----------------------------ccceEEeccCCCC---ch----hhhh-
Confidence 34444455554333322110000 0000000000000 00 0000
Q ss_pred ccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Q 043990 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577 (911)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~ 577 (911)
..........|-.+|..+|......+...++||+|.+.+..+|...|+..++..+.+|+.|++++|..
T Consensus 228 ------------q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~ 295 (442)
T KOG0340|consen 228 ------------QGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLA 295 (442)
T ss_pred ------------hheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHH
Confidence 00112334678889999999988766789999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCccc
Q 043990 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638 (911)
Q Consensus 578 iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~ 638 (911)
.+.+|+.... .+||+|+++++|||++..+-||+||.|-.|..|++|+||..|.|..-.
T Consensus 296 aLsrFrs~~~---~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 296 ALSRFRSNAA---RILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred HHHHHhhcCc---cEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 9999998544 489999999999999999999999999999999999999999998754
No 68
>PRK00254 ski2-like helicase; Provisional
Probab=99.77 E-value=1.6e-16 Score=195.46 Aligned_cols=130 Identities=20% Similarity=0.181 Sum_probs=87.8
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..|+|+|.+++.-.+. . .+.+|++.+||+|||+.+...+...+... ..++|+|+|. .|+.|+.+
T Consensus 22 ~~l~~~Q~~ai~~~~~--------~-g~nvlv~apTGsGKT~~~~l~il~~l~~~------~~~~l~l~P~~aLa~q~~~ 86 (720)
T PRK00254 22 EELYPPQAEALKSGVL--------E-GKNLVLAIPTASGKTLVAEIVMVNKLLRE------GGKAVYLVPLKALAEEKYR 86 (720)
T ss_pred CCCCHHHHHHHHHHHh--------C-CCcEEEECCCCcHHHHHHHHHHHHHHHhc------CCeEEEEeChHHHHHHHHH
Confidence 3578999999974321 1 35789999999999999855444333221 2479999998 77899999
Q ss_pred HHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcccc-ccCCCCcEEEEcCccccCCc
Q 043990 261 EIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKF-SCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 261 Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~-~~~~~~~lVIlDEAH~lKN~ 334 (911)
++.+|....+.+..++|...... . ....++|+|+|++.+....... .....+++||+||+|.+...
T Consensus 87 ~~~~~~~~g~~v~~~~Gd~~~~~-----~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~ 153 (720)
T PRK00254 87 EFKDWEKLGLRVAMTTGDYDSTD-----E---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSY 153 (720)
T ss_pred HHHHHhhcCCEEEEEeCCCCCch-----h---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCc
Confidence 99887544566666665433211 0 1235789999999874432210 11346899999999998543
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.76 E-value=2e-17 Score=197.40 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=105.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 513 AWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 513 ~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
.+.....|..++.+.+..+.. .+.+|||||+.....+.+...|...|+++..|+|.+...+|..+..+|+.+ .+
T Consensus 402 i~~~~~~K~~ai~~~i~~~~~-~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g-----~V 475 (762)
T TIGR03714 402 IYATLPEKLMATLEDVKEYHE-TGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG-----AV 475 (762)
T ss_pred EEECHHHHHHHHHHHHHHHhh-CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC-----eE
Confidence 345567899999888887655 589999999999999999999999999999999999988887777776653 38
Q ss_pred EEecCCcccccCCC---------CCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 593 LLSSKAGGCGLNLI---------GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 593 LlStkagg~GLNL~---------~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+++|..+|+|+|+. +.+.||.|+++-+. .+.|+.||++|.|..-.+..|
T Consensus 476 lIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s~~~ 533 (762)
T TIGR03714 476 TVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSSQFF 533 (762)
T ss_pred EEEccccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeEEEE
Confidence 99999999999999 88999999999665 559999999999987665433
No 70
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.74 E-value=3.8e-18 Score=181.99 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=110.8
Q ss_pred chHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecC
Q 043990 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSK 597 (911)
Q Consensus 518 S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStk 597 (911)
-.|+-+|.+.|. .+.-+||||+.-+.-.|-|..+|-..|+..+.++|+-.+++|...|+.|+.+..+ +|+.|+
T Consensus 407 EaKiVylLeCLQ----KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVATD 479 (610)
T KOG0341|consen 407 EAKIVYLLECLQ----KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVATD 479 (610)
T ss_pred hhhhhhHHHHhc----cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEEec
Confidence 455555555554 3678999999999999999999999999999999999999999999999997766 899999
Q ss_pred CcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHH
Q 043990 598 AGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQ 656 (911)
Q Consensus 598 agg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~ 656 (911)
+++-|||+++..|||+||.|-.-.+|.+||||.+|-|.+--.+ .||.+.+-|--+++
T Consensus 480 VASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT--TfINK~~~esvLlD 536 (610)
T KOG0341|consen 480 VASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT--TFINKNQEESVLLD 536 (610)
T ss_pred chhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee--eeecccchHHHHHH
Confidence 9999999999999999999999999999999999999775332 35666665554443
No 71
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=3.8e-16 Score=188.19 Aligned_cols=133 Identities=15% Similarity=0.225 Sum_probs=111.7
Q ss_pred ccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEE
Q 043990 514 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFL 593 (911)
Q Consensus 514 ~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~L 593 (911)
+.....|..+|..++..... .+.++||||+.....+.+...|...|+++..|+|.+...+|..+...++.+ .++
T Consensus 407 ~~~~~~K~~al~~~i~~~~~-~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g-----~Vl 480 (790)
T PRK09200 407 FVTLDEKYKAVIEEVKERHE-TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG-----AVT 480 (790)
T ss_pred EcCHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC-----eEE
Confidence 34557799999888877654 589999999999999999999999999999999999988887777777642 389
Q ss_pred EecCCcccccCC---CCCC-----EEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHH
Q 043990 594 LSSKAGGCGLNL---IGGN-----RLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQR 657 (911)
Q Consensus 594 lStkagg~GLNL---~~An-----~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~r 657 (911)
++|..+|+|+|+ .+.. +||.||.|-|+..|.|++||++|.|..-.+..| + |.|+.++.+
T Consensus 481 IATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--i---s~eD~l~~~ 547 (790)
T PRK09200 481 VATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF--I---SLEDDLLKR 547 (790)
T ss_pred EEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE--E---cchHHHHHh
Confidence 999999999999 4776 999999999999999999999999988655433 2 446666654
No 72
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=2e-16 Score=174.10 Aligned_cols=325 Identities=15% Similarity=0.207 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCce-EEEEeCc-hhhHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKK-AIIVTPT-SLVSNWEAEIK 263 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~-~LIV~P~-sLl~qW~~Ei~ 263 (911)
|.|-++|.-.+. .+-+|=-.-+|+|||...|--+.......+.-.|..+| .||+||+ .|..|-..|.+
T Consensus 248 piq~qalptals----------grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaK 317 (731)
T KOG0339|consen 248 PIQCQALPTALS----------GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAK 317 (731)
T ss_pred cccccccccccc----------cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHH
Confidence 667776665431 11222234589999976665444333332232333334 5788998 67788899999
Q ss_pred HHhCC-CeEEEEec-CCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccchhcc
Q 043990 264 KWVGG-RVQLIALC-ESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTLTNR 340 (911)
Q Consensus 264 k~~~~-~~~v~~~~-~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~~~~ 340 (911)
+|... .++++.++ |....+....+. ..+.+||+|++.+..... .-....+..+||+|||.+|-....
T Consensus 318 kf~K~ygl~~v~~ygGgsk~eQ~k~Lk------~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGf---- 387 (731)
T KOG0339|consen 318 KFGKAYGLRVVAVYGGGSKWEQSKELK------EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGF---- 387 (731)
T ss_pred HhhhhccceEEEeecCCcHHHHHHhhh------cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhcccc----
Confidence 99553 56655554 444444444443 345799999998854332 111234678899999999843211
Q ss_pred CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcEE
Q 043990 341 NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKII 420 (911)
Q Consensus 341 N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~ 420 (911)
. ...+.+.. .--|....
T Consensus 388 --e-------------------------------------------------~qVrSI~~------------hirpdrQt 404 (731)
T KOG0339|consen 388 --E-------------------------------------------------PQVRSIKQ------------HIRPDRQT 404 (731)
T ss_pred --H-------------------------------------------------HHHHHHHh------------hcCCcceE
Confidence 0 01111111 11344444
Q ss_pred EEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhH-hhhhcCCCCCCCcchhhhcCCccc
Q 043990 421 EVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIY-DTIKSGNPGTTGFEDCIRFFPPEM 499 (911)
Q Consensus 421 ~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~-~~~~~~~~~~~~~~~~~~~~~~e~ 499 (911)
.+....|...-..+-+.++.. |.-+. ..+...+ ..+....
T Consensus 405 llFsaTf~~kIe~lard~L~d-----------------------------pVrvVqg~vgean---~dITQ~V------- 445 (731)
T KOG0339|consen 405 LLFSATFKKKIEKLARDILSD-----------------------------PVRVVQGEVGEAN---EDITQTV------- 445 (731)
T ss_pred EEeeccchHHHHHHHHHHhcC-----------------------------CeeEEEeehhccc---cchhhee-------
Confidence 445555555444444333211 10000 0000000 0000000
Q ss_pred ccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Q 043990 500 FSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLV 579 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv 579 (911)
........|+.+|.+-|..... ..+||||..-....+-|...|...|+++..++|++.+.+|.+.+
T Consensus 446 ------------~V~~s~~~Kl~wl~~~L~~f~S--~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 446 ------------SVCPSEEKKLNWLLRHLVEFSS--EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred ------------eeccCcHHHHHHHHHHhhhhcc--CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHH
Confidence 0112235688877777666543 46999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 043990 580 NHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIE 651 (911)
Q Consensus 580 ~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIE 651 (911)
..|+..... +|+.|+++.+||++....+||+||.--.-..+.|+|||.+|.|-+ -..|.|++.-..+
T Consensus 512 s~fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 512 SKFKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HHHhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 999985444 899999999999999999999999999999999999999999988 5567788765444
No 73
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=2e-17 Score=177.69 Aligned_cols=303 Identities=15% Similarity=0.184 Sum_probs=197.6
Q ss_pred CceEEEcCCCchHHHHHHHHHH--HHHhcCCCCCCCCceEEEEeCchhh-HHHHHHHHHHhC-CCeEEEEecCCcchhhh
Q 043990 209 HGCILADDMGLGKTLQSIALLY--TLLCQGFDGKPMVKKAIIVTPTSLV-SNWEAEIKKWVG-GRVQLIALCESTRDDVV 284 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~--~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~Ei~k~~~-~~~~v~~~~~~~r~~~~ 284 (911)
.-+|-...+|.|||+.-+.--. ........+....-.+||+.|+.-+ .|-+-|..++-- +...+..++++.|....
T Consensus 258 ~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqi 337 (629)
T KOG0336|consen 258 IDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQI 337 (629)
T ss_pred cceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHH
Confidence 4567788999999987653221 1111111111113368999998554 666778888754 34566777788887776
Q ss_pred ccCcccCCCCCCccEEEEehHHHHhhc-cccccCCCCcEEEEcCccccCCccchhccCCHHHHHHhhhhcCCCCCCCHHH
Q 043990 285 SGIDSFTDPCSSLQVLIVSYETFRMHS-SKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAY 363 (911)
Q Consensus 285 ~~~~~~~~~~~~~~VvI~Sye~l~~~~-~~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l~El~sLl~fl~P~~l~~~~~ 363 (911)
..++ ....++|+|+..|.... ..+.....+.+||+|||.++-.-..
T Consensus 338 e~lk------rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgF--------------------------- 384 (629)
T KOG0336|consen 338 EDLK------RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGF--------------------------- 384 (629)
T ss_pred HHHh------cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccc---------------------------
Confidence 6654 45679999999884322 2222345678999999999843210
Q ss_pred HHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHH
Q 043990 364 FRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKN 443 (911)
Q Consensus 364 F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~ 443 (911)
+ ..++ .++ ..--|.+....-...-.+-.+.+-..++..
T Consensus 385 -----E-----------------------pqIr----kil--------ldiRPDRqtvmTSATWP~~VrrLa~sY~Ke-- 422 (629)
T KOG0336|consen 385 -----E-----------------------PQIR----KIL--------LDIRPDRQTVMTSATWPEGVRRLAQSYLKE-- 422 (629)
T ss_pred -----c-----------------------HHHH----HHh--------hhcCCcceeeeecccCchHHHHHHHHhhhC--
Confidence 0 0011 111 112344433333333333333333332211
Q ss_pred HHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHH
Q 043990 444 VKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHV 523 (911)
Q Consensus 444 ~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~ 523 (911)
|-.++.. ............. -.....+.|+..
T Consensus 423 ---------------------------p~~v~vG----sLdL~a~~sVkQ~-----------------i~v~~d~~k~~~ 454 (629)
T KOG0336|consen 423 ---------------------------PMIVYVG----SLDLVAVKSVKQN-----------------IIVTTDSEKLEI 454 (629)
T ss_pred ---------------------------ceEEEec----ccceeeeeeeeee-----------------EEecccHHHHHH
Confidence 1100000 0000000000000 011234788888
Q ss_pred HHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCccccc
Q 043990 524 LARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGL 603 (911)
Q Consensus 524 L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GL 603 (911)
+..+++.+. +++|+|||+..+.++|-|..-|...|+..--|+|.-.+.+|...++.|+.+. ..+|++|+.+++||
T Consensus 455 ~~~f~~~ms--~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~---vrILvaTDlaSRGl 529 (629)
T KOG0336|consen 455 VQFFVANMS--SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGE---VRILVATDLASRGL 529 (629)
T ss_pred HHHHHHhcC--CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCc---eEEEEEechhhcCC
Confidence 888888875 4799999999999999999999999999999999999999999999999854 35999999999999
Q ss_pred CCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccE
Q 043990 604 NLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRV 639 (911)
Q Consensus 604 NL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V 639 (911)
++....||++||-|-|-..|.+|+||++|.|.+-.-
T Consensus 530 Dv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s 565 (629)
T KOG0336|consen 530 DVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS 565 (629)
T ss_pred CchhcceeeccCCCccHHHHHHHhcccccCCCCcce
Confidence 999999999999999999999999999999977543
No 74
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=2e-17 Score=173.00 Aligned_cols=301 Identities=21% Similarity=0.261 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEE-cCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh----HHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILA-DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV----SNWEA 260 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILA-DemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl----~qW~~ 260 (911)
|.|.+++.-++. .+. ||| .--|+|||..-+..++...... ...-..+|++|+.-+ +|-..
T Consensus 110 PiQeesIPiaLt----------Grd-iLaRaKNGTGKT~a~~IP~Lekid~~----~~~IQ~~ilVPtrelALQtSqvc~ 174 (459)
T KOG0326|consen 110 PIQEESIPIALT----------GRD-ILARAKNGTGKTAAYCIPVLEKIDPK----KNVIQAIILVPTRELALQTSQVCK 174 (459)
T ss_pred Cccccccceeec----------chh-hhhhccCCCCCccceechhhhhcCcc----ccceeEEEEeecchhhHHHHHHHH
Confidence 778888876642 122 555 5679999977555444433222 123357999998433 78889
Q ss_pred HHHHHhCCCeEEEEecCC--cchhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccch
Q 043990 261 EIKKWVGGRVQLIALCES--TRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 261 Ei~k~~~~~~~v~~~~~~--~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
++.|+++ +.+.+..|+ .++++.. .....+++|.|++.+..... .........++|+|||..+-+..
T Consensus 175 ~lskh~~--i~vmvttGGT~lrDDI~R-------l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~-- 243 (459)
T KOG0326|consen 175 ELSKHLG--IKVMVTTGGTSLRDDIMR-------LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVD-- 243 (459)
T ss_pred HHhcccC--eEEEEecCCcccccceee-------ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchh--
Confidence 9999987 444444443 3333322 12457899999998854443 23334567899999999984321
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPP 417 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~ 417 (911)
| ..++. .+...||+
T Consensus 244 --------------------------F-------------------------------~~~~e---------~li~~lP~ 257 (459)
T KOG0326|consen 244 --------------------------F-------------------------------QPIVE---------KLISFLPK 257 (459)
T ss_pred --------------------------h-------------------------------hhHHH---------HHHHhCCc
Confidence 1 11111 11124665
Q ss_pred cEEEEEE-ecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC
Q 043990 418 KIIEVVC-CKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP 496 (911)
Q Consensus 418 k~~~vv~-~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~ 496 (911)
......+ ..+.-..+.+.+..+. .|+-+....+-.. .+...
T Consensus 258 ~rQillySATFP~tVk~Fm~~~l~-----------------------------kPy~INLM~eLtl---~GvtQ------ 299 (459)
T KOG0326|consen 258 ERQILLYSATFPLTVKGFMDRHLK-----------------------------KPYEINLMEELTL---KGVTQ------ 299 (459)
T ss_pred cceeeEEecccchhHHHHHHHhcc-----------------------------Ccceeehhhhhhh---cchhh------
Confidence 4443333 2222222222222211 1111100000000 00000
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~ 576 (911)
--.+++.+-|+..|..|+..+.- ...||||+.++.++++++.+.+.||++..++..|.++.|.
T Consensus 300 --------------yYafV~e~qKvhCLntLfskLqI---NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRN 362 (459)
T KOG0326|consen 300 --------------YYAFVEERQKVHCLNTLFSKLQI---NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRN 362 (459)
T ss_pred --------------heeeechhhhhhhHHHHHHHhcc---cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhh
Confidence 01235568899999999988764 5789999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCc
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQK 636 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQk 636 (911)
.+...|+++. ..-|++++...+|+|+++.|.||+||-+-|+..|.+|+||.+|.|--
T Consensus 363 rVFHdFr~G~---crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 363 RVFHDFRNGK---CRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred hhhhhhhccc---cceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 9999999853 34899999999999999999999999999999999999999999964
No 75
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.70 E-value=6.3e-16 Score=179.38 Aligned_cols=316 Identities=16% Similarity=0.201 Sum_probs=202.6
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
..||-|.++|..+.+ .+.+|.-.+||.||++..-.. .++.. +.+|||.|- +|+....+.
T Consensus 17 ~FR~gQ~evI~~~l~----------g~d~lvvmPTGgGKSlCyQiP--All~~--------G~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 17 SFRPGQQEIIDALLS----------GKDTLVVMPTGGGKSLCYQIP--ALLLE--------GLTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred ccCCCHHHHHHHHHc----------CCcEEEEccCCCCcchHhhhH--HHhcC--------CCEEEECchHHHHHHHHHH
Confidence 356779999998864 267899999999999854332 23333 369999997 888888888
Q ss_pred HHHHhCCCeEEEEecCCc----chhhhccCcccCCCCCCccEEEEehHHHHhhc-cccccCCCCcEEEEcCccccCCccc
Q 043990 262 IKKWVGGRVQLIALCEST----RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHS-SKFSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~----r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~-~~~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
+... ++.+..+++.. +..+...+. .+..+++..++|.+.... ..+.......+++|||||.+..+.
T Consensus 77 l~~~---Gi~A~~lnS~l~~~e~~~v~~~l~-----~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWG- 147 (590)
T COG0514 77 LEAA---GIRAAYLNSTLSREERQQVLNQLK-----SGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWG- 147 (590)
T ss_pred HHHc---CceeehhhcccCHHHHHHHHHHHh-----cCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcC-
Confidence 8765 25555555442 222222222 245789999999985432 122235678999999999984432
Q ss_pred hhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCC
Q 043990 337 LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLP 416 (911)
Q Consensus 337 ~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP 416 (911)
..|+..|.. |..+.. .+|
T Consensus 148 -------------------------hdFRP~Y~~------------------------lg~l~~-------------~~~ 165 (590)
T COG0514 148 -------------------------HDFRPDYRR------------------------LGRLRA-------------GLP 165 (590)
T ss_pred -------------------------CccCHhHHH------------------------HHHHHh-------------hCC
Confidence 234444421 222211 344
Q ss_pred CcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC
Q 043990 417 PKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP 496 (911)
Q Consensus 417 ~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~ 496 (911)
.....-....-++..+.-....+.-. .. ..++.-.+.|.+.+....
T Consensus 166 ~~p~~AlTATA~~~v~~DI~~~L~l~-------~~----------~~~~~sfdRpNi~~~v~~----------------- 211 (590)
T COG0514 166 NPPVLALTATATPRVRDDIREQLGLQ-------DA----------NIFRGSFDRPNLALKVVE----------------- 211 (590)
T ss_pred CCCEEEEeCCCChHHHHHHHHHhcCC-------Cc----------ceEEecCCCchhhhhhhh-----------------
Confidence 22222222233332222111110000 00 000001111222111100
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~ 576 (911)
...++.+.+ .|.......+...||||..+...+.+++.|...|++...+||+++.++|.
T Consensus 212 -------------------~~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~ 270 (590)
T COG0514 212 -------------------KGEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERE 270 (590)
T ss_pred -------------------cccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHH
Confidence 012222222 22222223456789999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGT 649 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gT 649 (911)
.+-++|..++.. ++++|.|-|-|||=++...||+||+|-+...|.|-+||++|+|....+..+ ...+.
T Consensus 271 ~~q~~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill--~~~~D 338 (590)
T COG0514 271 RVQQAFLNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL--YSPED 338 (590)
T ss_pred HHHHHHhcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe--ecccc
Confidence 999999985554 899999999999999999999999999999999999999999988777654 44443
No 76
>PRK09401 reverse gyrase; Reviewed
Probab=99.70 E-value=1.8e-15 Score=191.42 Aligned_cols=103 Identities=10% Similarity=0.037 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHhhcCCCeEEEEEcchHH---HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQT---LDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 519 ~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~---ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
.|...|.+++..+ +..+|||++.... ++.+...|...|+++..++|++ .+.+++|.++..+ +|++
T Consensus 315 ~k~~~L~~ll~~l----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVa 382 (1176)
T PRK09401 315 DSVEKLVELVKRL----GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVG 382 (1176)
T ss_pred cHHHHHHHHHHhc----CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEE
Confidence 5677777777653 4689999998777 9999999999999999999999 2345999987655 6666
Q ss_pred ----cCCcccccCCCC-CCEEEEeCCCC------CcchHHHHHHhhhhc
Q 043990 596 ----SKAGGCGLNLIG-GNRLVLFDPDW------NPANDKQAAARVWRD 633 (911)
Q Consensus 596 ----tkagg~GLNL~~-An~VIl~Dp~W------NPa~~~QAigR~~Ri 633 (911)
|+++++|||++. ..+||+|+.|- ....+..++||+.++
T Consensus 383 tas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 383 VASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred ecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 689999999998 89999999997 666778899998644
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.70 E-value=1.7e-15 Score=179.84 Aligned_cols=122 Identities=13% Similarity=0.148 Sum_probs=106.4
Q ss_pred cccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 043990 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLL 594 (911)
Q Consensus 515 ~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~Ll 594 (911)
.....|+.++.+.+..... .++.|||||++....+.+..+|...|+++..|+|. +.+|...+..|..+.. .++|
T Consensus 385 ~t~~~k~~ai~~~i~~~~~-~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g---~VtI 458 (745)
T TIGR00963 385 KTEEEKWKAVVDEIKERHA-KGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKG---AVTI 458 (745)
T ss_pred cCHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCc---eEEE
Confidence 3345688888777776665 69999999999999999999999999999999998 6699999999987444 4999
Q ss_pred ecCCcccccCCCC-------CCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 595 SSKAGGCGLNLIG-------GNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 595 Stkagg~GLNL~~-------An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+|..+|+|+|+.. .-+||.++++-|+..+.|+.||++|.|..-....|
T Consensus 459 ATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 459 ATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred EeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 9999999999987 67999999999999999999999999998665443
No 78
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.69 E-value=3.4e-15 Score=181.24 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=91.8
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWE 259 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~ 259 (911)
....|+||..||..+.+.+.......+.++||+.+.+|+|||++++.++..++... ...++|||||. .|+.||.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~-----~~~~vl~lvdR~~L~~Q~~ 310 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL-----KNPKVFFVVDRRELDYQLM 310 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc-----CCCeEEEEECcHHHHHHHH
Confidence 45689999999999988753211112356789999999999999999998877432 24689999997 7889999
Q ss_pred HHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcccccc---CCCC-cEEEEcCccccC
Q 043990 260 AEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSC---SESC-DLLICDEAHRLK 332 (911)
Q Consensus 260 ~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~---~~~~-~lVIlDEAH~lK 332 (911)
++|.++...... .. .........+.. ....|+|+|+++|......... .... .+||+|||||..
T Consensus 311 ~~f~~~~~~~~~--~~--~s~~~L~~~l~~-----~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~ 378 (667)
T TIGR00348 311 KEFQSLQKDCAE--RI--ESIAELKRLLEK-----DDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ 378 (667)
T ss_pred HHHHhhCCCCCc--cc--CCHHHHHHHHhC-----CCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc
Confidence 999998753111 00 111111111111 2357999999999653221110 1112 389999999974
No 79
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.69 E-value=4.1e-16 Score=182.23 Aligned_cols=352 Identities=19% Similarity=0.227 Sum_probs=213.8
Q ss_pred cccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC
Q 043990 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251 (911)
Q Consensus 172 ~~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P 251 (911)
.....|......+|+||..||....+.+. .+.+.++|++.+|+|||.+||++|+.|++.+ ..+++|.++-
T Consensus 154 ~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~-----~g~~raLlvMATGTGKTrTAiaii~rL~r~~-----~~KRVLFLaD 223 (875)
T COG4096 154 QLAYIDIDSAIGPRYYQIIAIRRVIEAFS-----KGQNRALLVMATGTGKTRTAIAIIDRLIKSG-----WVKRVLFLAD 223 (875)
T ss_pred ccccCcccccccchHHHHHHHHHHHHHHh-----cCCceEEEEEecCCCcceeHHHHHHHHHhcc-----hhheeeEEec
Confidence 34556667788999999999999998653 4556699999999999999999999999987 6889999999
Q ss_pred c-hhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc-------ccccCCCCcEE
Q 043990 252 T-SLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-------KFSCSESCDLL 323 (911)
Q Consensus 252 ~-sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-------~~~~~~~~~lV 323 (911)
. +|+.|=..++..|.|..-.+..+.+.... ..+.|.+.||.++..... .|. ...||+|
T Consensus 224 R~~Lv~QA~~af~~~~P~~~~~n~i~~~~~~-------------~s~~i~lsTyqt~~~~~~~~~~~~~~f~-~g~FDlI 289 (875)
T COG4096 224 RNALVDQAYGAFEDFLPFGTKMNKIEDKKGD-------------TSSEIYLSTYQTMTGRIEQKEDEYRRFG-PGFFDLI 289 (875)
T ss_pred hHHHHHHHHHHHHHhCCCccceeeeecccCC-------------cceeEEEeehHHHHhhhhccccccccCC-CCceeEE
Confidence 5 88899999999999974333333222111 246899999999953332 222 4569999
Q ss_pred EEcCccccCCccchhccCCHHHHHHhhhh---cCCCCC---CCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHH
Q 043990 324 ICDEAHRLKNDQTLTNRNDLEEFFAMVNF---TNPGIL---GDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397 (911)
Q Consensus 324 IlDEAH~lKN~~s~~~~N~l~El~sLl~f---l~P~~l---~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~ 397 (911)
|+|||||=--..-+ .+-++|+-+.. ..|.-. .++..|. +.|+... .|..
T Consensus 290 vIDEaHRgi~~~~~----~I~dYFdA~~~gLTATP~~~~d~~T~~~F~---g~Pt~~Y------------------slee 344 (875)
T COG4096 290 VIDEAHRGIYSEWS----SILDYFDAATQGLTATPKETIDRSTYGFFN---GEPTYAY------------------SLEE 344 (875)
T ss_pred EechhhhhHHhhhH----HHHHHHHHHHHhhccCcccccccccccccC---CCcceee------------------cHHH
Confidence 99999983111000 12222221111 112111 1111121 3332111 0111
Q ss_pred HhhHHhhhhcHHHHhccCCCcEEEEE-EecC-----CHH--HHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhc
Q 043990 398 KVNQFILRRTNALLSNHLPPKIIEVV-CCKL-----TPL--QSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCN 469 (911)
Q Consensus 398 ~l~~~ilRRtk~~v~~~LP~k~~~vv-~~~l-----s~~--Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~Lrklcn 469 (911)
.+.--+ -.|++...+. .... +.. +.+++...+ +
T Consensus 345 AV~DGf----------Lvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i-----------------------------~ 385 (875)
T COG4096 345 AVEDGF----------LVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI-----------------------------D 385 (875)
T ss_pred Hhhccc----------cCCCCceEEeeeccccCcCcCccchhhhhhcccc-----------------------------C
Confidence 111100 1333322221 1111 000 111110000 0
Q ss_pred ChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhc--CC---CeEEEEEc
Q 043990 470 HPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQR--TD---DRIVLVSN 544 (911)
Q Consensus 470 hP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~--~~---~KVIIFSq 544 (911)
. ....+.... .+.. .........+...+.++... +| .|.||||.
T Consensus 386 ~-------------------------dd~~~~~~d-----~dr~-~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~ 434 (875)
T COG4096 386 E-------------------------DDQNFEARD-----FDRT-LVIPFRTETVARELTEYLKRGATGDEIGKTIVFAK 434 (875)
T ss_pred c-------------------------ccccccccc-----cchh-ccccchHHHHHHHHHHHhccccCCCccCceEEEee
Confidence 0 000000000 0000 01122233444444444332 33 59999999
Q ss_pred chHHHHHHHHHHHHc----C-CCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCC
Q 043990 545 YTQTLDLFAQLCRER----R-YPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWN 619 (911)
Q Consensus 545 ~~~~ld~L~~~L~~~----g-i~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WN 619 (911)
...+++.|...|... + --+..++|... +-++.|+.|-. ......+.+|.+.+.+|+|.+.+-.+||+-+--+
T Consensus 435 n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrS 511 (875)
T COG4096 435 NHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRS 511 (875)
T ss_pred CcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhh
Confidence 999999999999875 2 22567888876 55678889976 3445579999999999999999999999999999
Q ss_pred cchHHHHHHhhhhc-------CCccc-EEEEEEE
Q 043990 620 PANDKQAAARVWRD-------GQKKR-VFIYRFL 645 (911)
Q Consensus 620 Pa~~~QAigR~~Ri-------GQkk~-V~VyrLi 645 (911)
...+.|.+||.-|+ ||.|. ..|+.++
T Consensus 512 ktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 512 KTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred HHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 99999999999996 35443 5566654
No 80
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.68 E-value=8.8e-16 Score=166.95 Aligned_cols=319 Identities=19% Similarity=0.230 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHH-HHHHhcCCC-CCCCCceEEEEeCc-hhhHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALL-YTLLCQGFD-GKPMVKKAIIVTPT-SLVSNWEAEI 262 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali-~~ll~~g~~-~~p~~~~~LIV~P~-sLl~qW~~Ei 262 (911)
-.|..+|..+++ ....+--.-||+|||..-+..+ ..++.+... .....-..+|++|+ .|..|-...+
T Consensus 44 lIQs~aIplaLE----------gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~vi 113 (569)
T KOG0346|consen 44 LIQSSAIPLALE----------GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVI 113 (569)
T ss_pred hhhhcccchhhc----------CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHH
Confidence 458888888765 1243444679999999865544 444444322 22234468999998 5666777777
Q ss_pred HHH---hCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCCccch
Q 043990 263 KKW---VGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 263 ~k~---~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
.+. ++..++++-+..+......+.+ -...++|||+|+..+..+... +.......++|+|||.-+-.
T Consensus 114 ekL~~~c~k~lr~~nl~s~~sdsv~~~~-----L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLlls---- 184 (569)
T KOG0346|consen 114 EKLVEYCSKDLRAINLASSMSDSVNSVA-----LMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLS---- 184 (569)
T ss_pred HHHHHHHHHhhhhhhhhcccchHHHHHH-----HccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhh----
Confidence 664 4434555555544333332211 124678999999988655431 12234567899999998732
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPP 417 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~ 417 (911)
||-. ++|..+.. .||+
T Consensus 185 --------------------fGYe-------------------------------edlk~l~~-------------~LPr 200 (569)
T KOG0346|consen 185 --------------------FGYE-------------------------------EDLKKLRS-------------HLPR 200 (569)
T ss_pred --------------------cccH-------------------------------HHHHHHHH-------------hCCc
Confidence 1111 22322222 5663
Q ss_pred cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCC-CCCCCcchhhhcCC
Q 043990 418 KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGN-PGTTGFEDCIRFFP 496 (911)
Q Consensus 418 k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~-~~~~~~~~~~~~~~ 496 (911)
. |..++.+ ..+-..+..|+++|.|.-.+. .+..+. +....+...
T Consensus 201 ~----------------~Q~~LmS-------------ATl~dDv~~LKkL~l~nPviL-kl~e~el~~~dqL~Qy----- 245 (569)
T KOG0346|consen 201 I----------------YQCFLMS-------------ATLSDDVQALKKLFLHNPVIL-KLTEGELPNPDQLTQY----- 245 (569)
T ss_pred h----------------hhheeeh-------------hhhhhHHHHHHHHhccCCeEE-EeccccCCCcccceEE-----
Confidence 2 3333222 123344567887776644332 111111 000000000
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~ 576 (911)
........|+..+.-|++--.- ..|+|||.|..+....+.-+|...|++.+.|.|.+|..-|.
T Consensus 246 ---------------~v~cse~DKflllyallKL~LI--~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~ 308 (569)
T KOG0346|consen 246 ---------------QVKCSEEDKFLLLYALLKLRLI--RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRC 308 (569)
T ss_pred ---------------EEEeccchhHHHHHHHHHHHHh--cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchh
Confidence 0011235677777777764332 47999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEecC--------------------------C---------cccccCCCCCCEEEEeCCCCCcc
Q 043990 577 KLVNHFNDPSKNEFVFLLSSK--------------------------A---------GGCGLNLIGGNRLVLFDPDWNPA 621 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStk--------------------------a---------gg~GLNL~~An~VIl~Dp~WNPa 621 (911)
.+|++||.|- +-++|+|+ . .++|||+...+.||+||.|-++.
T Consensus 309 Hii~QFNkG~---YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~ 385 (569)
T KOG0346|consen 309 HIIEQFNKGL---YDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVT 385 (569)
T ss_pred hHHHHhhCcc---eeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchH
Confidence 9999999853 44777777 1 24799999999999999999999
Q ss_pred hHHHHHHhhhhcCCcccEEEE
Q 043990 622 NDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 622 ~~~QAigR~~RiGQkk~V~Vy 642 (911)
.|++|+||+.|-|.+-.+.-|
T Consensus 386 sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 386 SYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred HHHHhccccccCCCCCceEEE
Confidence 999999999998877665443
No 81
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=1.1e-14 Score=172.14 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=108.0
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
....|...|.+++..+.. .+..+|||++.....+.+...|...|+++..|+|.+. +|...+..|...... ++|+
T Consensus 454 t~~~K~~aL~~~i~~~~~-~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVA 527 (656)
T PRK12898 454 TAAAKWAAVAARVRELHA-QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVA 527 (656)
T ss_pred CHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEE
Confidence 446789999998887654 4678999999999999999999999999999999866 555555566543333 8999
Q ss_pred cCCcccccCCC---CCC-----EEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 043990 596 SKAGGCGLNLI---GGN-----RLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMS 660 (911)
Q Consensus 596 tkagg~GLNL~---~An-----~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~ 660 (911)
|..+|+|+|+. ... +||.||.|-|...|.|++||++|.|..-.+..| + |.|+.++.+-..
T Consensus 528 TdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--i---s~eD~l~~~~~~ 595 (656)
T PRK12898 528 TNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--L---SLEDDLLQSFLG 595 (656)
T ss_pred ccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--e---chhHHHHHhhhh
Confidence 99999999998 443 999999999999999999999999977554333 3 457777765443
No 82
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.67 E-value=1.3e-16 Score=179.61 Aligned_cols=316 Identities=17% Similarity=0.177 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWEAEIKK 264 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~Ei~k 264 (911)
+.|..||...+. + ---|+-.--|+|||++...++..-+... ...-..+||+|+.-+ -|-..-+.+
T Consensus 50 kiQaaAIP~~~~---------k-mDliVQaKSGTGKTlVfsv~av~sl~~~----~~~~q~~Iv~PTREiaVQI~~tv~~ 115 (980)
T KOG4284|consen 50 KIQAAAIPAIFS---------K-MDLIVQAKSGTGKTLVFSVLAVESLDSR----SSHIQKVIVTPTREIAVQIKETVRK 115 (980)
T ss_pred chhhhhhhhhhc---------c-cceEEEecCCCCceEEEEeeeehhcCcc----cCcceeEEEecchhhhhHHHHHHHH
Confidence 779999886642 1 1347788899999998555544433222 122358999999666 455556665
Q ss_pred HhC--CCeEEEEecCCcc--hhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccchhc
Q 043990 265 WVG--GRVQLIALCESTR--DDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 265 ~~~--~~~~v~~~~~~~r--~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
.++ ..+++-++.|++. .+.. . ....+|+|-|++.+..... ........+++|+|||..|-...+
T Consensus 116 v~~sf~g~~csvfIGGT~~~~d~~-r-------lk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~s--- 184 (980)
T KOG4284|consen 116 VAPSFTGARCSVFIGGTAHKLDLI-R-------LKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTES--- 184 (980)
T ss_pred hcccccCcceEEEecCchhhhhhh-h-------hhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhh---
Confidence 555 2344444443332 2211 1 2345799999999865443 223356789999999999833211
Q ss_pred cCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcE
Q 043990 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKI 419 (911)
Q Consensus 340 ~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~ 419 (911)
| ...++.+ ...||...
T Consensus 185 ------------------------f-------------------------------q~~In~i---------i~slP~~r 200 (980)
T KOG4284|consen 185 ------------------------F-------------------------------QDDINII---------INSLPQIR 200 (980)
T ss_pred ------------------------H-------------------------------HHHHHHH---------HHhcchhh
Confidence 1 1111111 12466543
Q ss_pred EEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCccc
Q 043990 420 IEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEM 499 (911)
Q Consensus 420 ~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (911)
. ++-|.-| |..++. .+|-+....|.|+...... ..+-....+.-.-.
T Consensus 201 Q-v~a~SAT------Yp~nLd---------------------n~Lsk~mrdp~lVr~n~~d-----~~L~GikQyv~~~~ 247 (980)
T KOG4284|consen 201 Q-VAAFSAT------YPRNLD---------------------NLLSKFMRDPALVRFNADD-----VQLFGIKQYVVAKC 247 (980)
T ss_pred e-eeEEecc------CchhHH---------------------HHHHHHhcccceeecccCC-----ceeechhheeeecc
Confidence 3 3333322 222211 2334444455554321110 00000000000000
Q ss_pred ccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Q 043990 500 FSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLV 579 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv 579 (911)
+ ........--|++.|..++..+.- ...||||+...-++-++.+|...|+.+..+.|.|++++|..++
T Consensus 248 -s--------~nnsveemrlklq~L~~vf~~ipy---~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~ 315 (980)
T KOG4284|consen 248 -S--------PNNSVEEMRLKLQKLTHVFKSIPY---VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAV 315 (980)
T ss_pred -C--------CcchHHHHHHHHHHHHHHHhhCch---HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHH
Confidence 0 000001112377888888877643 6789999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCccc
Q 043990 580 NHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638 (911)
Q Consensus 580 ~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~ 638 (911)
+.++. -...+|+||+..++|||-..+|.||++|++-+...|.+||||++|.|..--
T Consensus 316 ~~lr~---f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 316 DQLRA---FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGA 371 (980)
T ss_pred HHhhh---ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccce
Confidence 99987 345699999999999999999999999999999999999999999997653
No 83
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.67 E-value=1.3e-14 Score=174.32 Aligned_cols=346 Identities=12% Similarity=0.098 Sum_probs=203.9
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHH-HHhcCCCCCCCCceEEEEeCchh-hHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT-LLCQGFDGKPMVKKAIIVTPTSL-VSNWE 259 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~-ll~~g~~~~p~~~~~LIV~P~sL-l~qW~ 259 (911)
..++|+|++++..+.+ +.++++..+||+|||..|+..+.. ++..+.......-.+|-|.|-.- -..-.
T Consensus 21 ~~~t~~Q~~a~~~i~~----------G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~ 90 (814)
T COG1201 21 TSLTPPQRYAIPEIHS----------GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIR 90 (814)
T ss_pred CCCCHHHHHHHHHHhC----------CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHH
Confidence 3466999999998853 467799999999999998876654 44443111112346999999744 44466
Q ss_pred HHHHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc--c-ccCCCCcEEEEcCccccCCcc
Q 043990 260 AEIKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--F-SCSESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 260 ~Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~-~~~~~~~lVIlDEAH~lKN~~ 335 (911)
..+..|... ++.+-+-+|...+...+.. ....++|+|||+|++...... + ....+...||+||.|.+.+.+
T Consensus 91 ~rL~~~~~~~G~~v~vRhGDT~~~er~r~-----~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 91 RRLEEPLRELGIEVAVRHGDTPQSEKQKM-----LKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHcCCccceecCCCChHHhhhc-----cCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 677766542 3455555665554433322 235789999999998543321 1 113467789999999997653
Q ss_pred chhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccC
Q 043990 336 TLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHL 415 (911)
Q Consensus 336 s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~L 415 (911)
--. .-..+. ++|..+..
T Consensus 166 RG~---------------------------------------------~Lsl~L---eRL~~l~~--------------- 182 (814)
T COG1201 166 RGV---------------------------------------------QLALSL---ERLRELAG--------------- 182 (814)
T ss_pred cch---------------------------------------------hhhhhH---HHHHhhCc---------------
Confidence 210 000111 11111111
Q ss_pred CCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcC
Q 043990 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF 495 (911)
Q Consensus 416 P~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~ 495 (911)
....+-||..+....+- .+.+..... +.-+...-..... .+ ..+
T Consensus 183 -----~~qRIGLSATV~~~~~v-------arfL~g~~~-----------------~~~Iv~~~~~k~~---~i----~v~ 226 (814)
T COG1201 183 -----DFQRIGLSATVGPPEEV-------AKFLVGFGD-----------------PCEIVDVSAAKKL---EI----KVI 226 (814)
T ss_pred -----ccEEEeehhccCCHHHH-------HHHhcCCCC-----------------ceEEEEcccCCcc---eE----EEE
Confidence 11222233322222111 000000000 0000000000000 00 000
Q ss_pred CcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcC-CCEEEEeCCCCHHH
Q 043990 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERR-YPYLRLDGTTSISK 574 (911)
Q Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~g-i~~~~LdGsts~~~ 574 (911)
.|.. +..+. ..=...+.+.+..+.+ ....+|||+|.+.+++.+...|+..+ ..+...||+.+.++
T Consensus 227 ~p~~-----------~~~~~--~~~~~~~~~~i~~~v~-~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~ 292 (814)
T COG1201 227 SPVE-----------DLIYD--EELWAALYERIAELVK-KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSREL 292 (814)
T ss_pred ecCC-----------ccccc--cchhHHHHHHHHHHHh-hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHH
Confidence 0000 00000 0111123333333333 34589999999999999999999987 88999999999999
Q ss_pred HHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhh-hhcCCcccEEEEEEEeCCCHHHH
Q 043990 575 RQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARV-WRDGQKKRVFIYRFLSTGTIEEK 653 (911)
Q Consensus 575 R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~-~RiGQkk~V~VyrLi~~gTIEEk 653 (911)
|..+.++|+++.-. .++||.....|||+-..+.||.|..|-.-+...||+||+ ||+|... -+++++.+ .++.
T Consensus 293 R~~vE~~lk~G~lr---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~S---kg~ii~~~-r~dl 365 (814)
T COG1201 293 RLEVEERLKEGELK---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVS---KGIIIAED-RDDL 365 (814)
T ss_pred HHHHHHHHhcCCce---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcc---cEEEEecC-HHHH
Confidence 99999999997644 899999999999999999999999999999999999999 5566543 33445555 5555
Q ss_pred HHHHHHHHH
Q 043990 654 VYQRQMSKE 662 (911)
Q Consensus 654 I~~rq~~K~ 662 (911)
+--....+.
T Consensus 366 lE~~vi~~~ 374 (814)
T COG1201 366 LECLVLADL 374 (814)
T ss_pred HHHHHHHHH
Confidence 444444443
No 84
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.67 E-value=7e-15 Score=175.63 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=112.0
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
...|+..|.+||..... ..++|||++....++.+.+-|...||.+..|+|..++.+|...++.|+++. ..+|+.|
T Consensus 596 e~eKf~kL~eLl~e~~e--~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~---~~LLvaT 670 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYE--DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV---VNLLVAT 670 (997)
T ss_pred chHHHHHHHHHHHHHhh--cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC---ceEEEeh
Confidence 36789999999998875 689999999999999999999999999999999999999999999999843 4599999
Q ss_pred CCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeC
Q 043990 597 KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLST 647 (911)
Q Consensus 597 kagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~ 647 (911)
+.++.||+...-..||+||.+--...|.+|.||+.|.|.+- ..|.|+..
T Consensus 671 svvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 671 SVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 99999999999999999999888888999999999999887 55556665
No 85
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.66 E-value=4.1e-16 Score=149.53 Aligned_cols=120 Identities=23% Similarity=0.380 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCC
Q 043990 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKA 598 (911)
Q Consensus 519 ~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStka 598 (911)
.|+..+..++..... .+.++|||++....++.+...|...+.++..++|+++..+|..+++.|+++. ..+|+++.+
T Consensus 12 ~k~~~i~~~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~ 87 (131)
T cd00079 12 EKLEALLELLKEHLK-KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDV 87 (131)
T ss_pred HHHHHHHHHHHhccc-CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcCh
Confidence 688888888887654 5789999999999999999999999999999999999999999999999865 358889999
Q ss_pred cccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 599 GGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 599 gg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+++|+|++.+++||+++++|++..+.|++||++|.||++.|++|
T Consensus 88 ~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 88 IARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999998888775
No 86
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.66 E-value=2.5e-14 Score=171.60 Aligned_cols=108 Identities=9% Similarity=0.128 Sum_probs=91.1
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHhh-cCCCCCceEEEEecCCcccccCCCCCCEE
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRER--RYPYLRLDGTTSISKRQKLVNHF-NDPSKNEFVFLLSSKAGGCGLNLIGGNRL 611 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~--gi~~~~LdGsts~~~R~~iv~~F-n~~~~~~~v~LlStkagg~GLNL~~An~V 611 (911)
.+.++|||++....++.+.+.|... ++.+..|+|++++ +.+.+++| +++ ...+|++|..+++||++.+.++|
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~g---k~kILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSK---NPSIIISTPYLESSVTIRNATHV 468 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccC---ceeEEeccChhhccccccCeeEE
Confidence 3568999999999999999999987 7999999999995 45677787 443 34699999999999999999999
Q ss_pred EEeC----CC--------CCcchHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 043990 612 VLFD----PD--------WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTI 650 (911)
Q Consensus 612 Il~D----p~--------WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTI 650 (911)
|.++ |. .+.+.+.||.||++|. ++-.+|+|+++...
T Consensus 469 ID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 469 YDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLL 516 (675)
T ss_pred EECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHh
Confidence 9997 32 2777889999999997 57888999988765
No 87
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.66 E-value=6.1e-15 Score=187.31 Aligned_cols=103 Identities=10% Similarity=0.084 Sum_probs=88.3
Q ss_pred HHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcC---------------------------------CCEEEEeCCCCH
Q 043990 526 RLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERR---------------------------------YPYLRLDGTTSI 572 (911)
Q Consensus 526 ~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~g---------------------------------i~~~~LdGsts~ 572 (911)
.++..+. .+.++|||++.+..++.+...|+... +.+..+||+++.
T Consensus 236 ~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSk 313 (1490)
T PRK09751 236 GILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSK 313 (1490)
T ss_pred HHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCH
Confidence 4444443 36899999999999999998887541 114567899999
Q ss_pred HHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhc
Q 043990 573 SKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRD 633 (911)
Q Consensus 573 ~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~Ri 633 (911)
++|..+.+.|+++.. .+|++|.+++.|||+...+.||+|+.|.+.+.+.||+||++|.
T Consensus 314 eeR~~IE~~fK~G~L---rvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 314 EQRAITEQALKSGEL---RCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHHHHHhCCc---eEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999999999998654 4899999999999999999999999999999999999999985
No 88
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=8.2e-15 Score=156.74 Aligned_cols=123 Identities=15% Similarity=0.223 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecC
Q 043990 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSK 597 (911)
Q Consensus 518 S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStk 597 (911)
..|..+|..|...+- =...||||..+.++..|...+...|+.+..++|.+...+|.+++++|+.+... +||+|.
T Consensus 315 ~~K~~~l~~lyg~~t---igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTn 388 (477)
T KOG0332|consen 315 DDKYQALVNLYGLLT---IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTN 388 (477)
T ss_pred hhHHHHHHHHHhhhh---hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEec
Confidence 568888888665543 35789999999999999999999999999999999999999999999997655 899999
Q ss_pred CcccccCCCCCCEEEEeCCCC------CcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 598 AGGCGLNLIGGNRLVLFDPDW------NPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 598 agg~GLNL~~An~VIl~Dp~W------NPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
+.++|||....+.||+||.|- .+..|.+||||++|.|.+--+ +.|+-.+
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a--~n~v~~~ 443 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLA--INLVDDK 443 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceE--EEeeccc
Confidence 999999999999999999874 578999999999999966433 3355443
No 89
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.64 E-value=7.2e-15 Score=180.77 Aligned_cols=342 Identities=16% Similarity=0.198 Sum_probs=217.1
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.||.||.+|++.+.+ .+..|+.-.||+|||...+..|...+.+.+ ..++|+|-|+ .|.....++
T Consensus 70 ~lY~HQ~~A~~~~~~----------G~~vvVtTgTgSGKTe~FllPIld~~l~~~-----~a~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 70 RLYSHQVDALRLIRE----------GRNVVVTTGTGSGKTESFLLPILDHLLRDP-----SARALLLYPTNALANDQAER 134 (851)
T ss_pred cccHHHHHHHHHHHC----------CCCEEEECCCCCchhHHHHHHHHHHHhhCc-----CccEEEEechhhhHhhHHHH
Confidence 499999999999863 267899999999999998877766555542 3488999998 666779999
Q ss_pred HHHHhCC---CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhc-----cccccCCCCcEEEEcCccccCC
Q 043990 262 IKKWVGG---RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHS-----SKFSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 262 i~k~~~~---~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~-----~~~~~~~~~~lVIlDEAH~lKN 333 (911)
|.+|... .+.+..++|.........+- .+.++|++|+|+|+.... ........+.+|||||+|..+.
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~-----~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAII-----RNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHH-----hCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 9999753 46788888887765543221 256799999999985421 1111123588999999998865
Q ss_pred ccchhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhc
Q 043990 334 DQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSN 413 (911)
Q Consensus 334 ~~s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~ 413 (911)
.. |+ ++ -+++||.+..+..
T Consensus 210 v~-----------------------GS---------------------------------~v-----A~llRRL~~~~~~ 228 (851)
T COG1205 210 VQ-----------------------GS---------------------------------EV-----ALLLRRLLRRLRR 228 (851)
T ss_pred cc-----------------------hh---------------------------------HH-----HHHHHHHHHHHhc
Confidence 31 11 11 1345666555532
Q ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhh
Q 043990 414 HLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIR 493 (911)
Q Consensus 414 ~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~ 493 (911)
. +....++++.-|- .. ..... ..+...+.-.. .-..+.+. +......
T Consensus 229 -~-~~~~q~i~~SAT~-------------------~n--p~e~~-------~~l~~~~f~~~-v~~~g~~~--~~~~~~~ 275 (851)
T COG1205 229 -Y-GSPLQIICTSATL-------------------AN--PGEFA-------EELFGRDFEVP-VDEDGSPR--GLRYFVR 275 (851)
T ss_pred -c-CCCceEEEEeccc-------------------cC--hHHHH-------HHhcCCcceee-ccCCCCCC--CceEEEE
Confidence 2 2233344433221 00 00000 11111100000 00000000 0000000
Q ss_pred cCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHH----HHHHHcC----CCEEE
Q 043990 494 FFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFA----QLCRERR----YPYLR 565 (911)
Q Consensus 494 ~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~----~~L~~~g----i~~~~ 565 (911)
..|+....... ..-.+...+..++..+.. .+-++|+|+.+.+.++.+. ..+...+ .....
T Consensus 276 ~~p~~~~~~~~-----------~r~s~~~~~~~~~~~~~~-~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~ 343 (851)
T COG1205 276 REPPIRELAES-----------IRRSALAELATLAALLVR-NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST 343 (851)
T ss_pred eCCcchhhhhh-----------cccchHHHHHHHHHHHHH-cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee
Confidence 00100000000 012566677777777665 6899999999999999996 3444445 56788
Q ss_pred EeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCC-CcchHHHHHHhhhhcCCcccEEEEEE
Q 043990 566 LDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDW-NPANDKQAAARVWRDGQKKRVFIYRF 644 (911)
Q Consensus 566 LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~W-NPa~~~QAigR~~RiGQkk~V~VyrL 644 (911)
..|++...+|.++...|+.++.. ++++|.|...|+++.+.+.||++--|- .-..+.|+.||++|.||.-.+ +..
T Consensus 344 ~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~--~~v 418 (851)
T COG1205 344 YRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLV--LVV 418 (851)
T ss_pred ccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceE--EEE
Confidence 89999999999999999986554 999999999999999999999999887 778999999999999954333 222
Q ss_pred EeCCCHHHHHH
Q 043990 645 LSTGTIEEKVY 655 (911)
Q Consensus 645 i~~gTIEEkI~ 655 (911)
.-.+-++..+.
T Consensus 419 ~~~~~~d~yy~ 429 (851)
T COG1205 419 LRSDPLDSYYL 429 (851)
T ss_pred eCCCccchhhh
Confidence 33555665443
No 90
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.64 E-value=2.9e-14 Score=161.31 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=72.1
Q ss_pred cCCCeEEEEEcchHHHHHHHHHHHHcC--CCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEE
Q 043990 534 RTDDRIVLVSNYTQTLDLFAQLCRERR--YPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRL 611 (911)
Q Consensus 534 ~~~~KVIIFSq~~~~ld~L~~~L~~~g--i~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~V 611 (911)
..+.|+|||++....++.+...|+..| +.+..++|.++..+|.++. ...+|++|+++++|||+... .|
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~~-~v 339 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKRD-WL 339 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCCc-eE
Confidence 357899999999999999999999875 5688899999999887653 12489999999999999864 66
Q ss_pred EEeCCCCCcchHHHHHHhhh
Q 043990 612 VLFDPDWNPANDKQAAARVW 631 (911)
Q Consensus 612 Il~Dp~WNPa~~~QAigR~~ 631 (911)
| ++ +-++..|.||+||++
T Consensus 340 i-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 I-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred E-EC-CCCHHHHhhhcccCC
Confidence 6 66 568889999999974
No 91
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=3.1e-15 Score=168.99 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=105.0
Q ss_pred chHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH-HHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLC-RERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 518 S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L-~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
-+|+.++.+++... -.-.+|||.|..+.+..|-..| .-.++.+..++|..++.+|...+++|+.+. .-+|++|
T Consensus 372 ~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~---IwvLicT 445 (593)
T KOG0344|consen 372 KGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGK---IWVLICT 445 (593)
T ss_pred hhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccC---eeEEEeh
Confidence 57888888888765 3478999999999999988888 667899999999999999999999999854 4599999
Q ss_pred CCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCccc-EEEE
Q 043990 597 KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR-VFIY 642 (911)
Q Consensus 597 kagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~-V~Vy 642 (911)
...++||++.++|.||+||.+-.-..|.+++||++|.|+.-. +..|
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 999999999999999999999999999999999999998844 4443
No 92
>COG4889 Predicted helicase [General function prediction only]
Probab=99.63 E-value=7.1e-15 Score=169.79 Aligned_cols=395 Identities=17% Similarity=0.212 Sum_probs=196.0
Q ss_pred ccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 173 PITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 173 ~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
+..+|+.=...|||||.+|+....+.+ - . +.+| =|-+.+|+|||++++-++..+.. .++|.++|+
T Consensus 151 ~~nl~l~~~kk~R~hQq~Aid~a~~~F---~-~-n~RG-kLIMAcGTGKTfTsLkisEala~---------~~iL~LvPS 215 (1518)
T COG4889 151 QDNLPLKKPKKPRPHQQTAIDAAKEGF---S-D-NDRG-KLIMACGTGKTFTSLKISEALAA---------ARILFLVPS 215 (1518)
T ss_pred ccccccCCCCCCChhHHHHHHHHHhhc---c-c-ccCC-cEEEecCCCccchHHHHHHHHhh---------hheEeecch
Confidence 455677777899999999999998743 2 2 2333 34555999999999999887743 579999998
Q ss_pred -hhhHHHHHHHHHHhCCCeEEEEecCCcchh---------------------hhccCcccCCCCCCccEEEEehHHHHhh
Q 043990 253 -SLVSNWEAEIKKWVGGRVQLIALCESTRDD---------------------VVSGIDSFTDPCSSLQVLIVSYETFRMH 310 (911)
Q Consensus 253 -sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~---------------------~~~~~~~~~~~~~~~~VvI~Sye~l~~~ 310 (911)
+|+.|--+|...-....+....++...+.. +++...... .....-||+.||+.+...
T Consensus 216 IsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~-k~~~~~vvFsTYQSl~~i 294 (1518)
T COG4889 216 ISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQ-KANGLTVVFSTYQSLPRI 294 (1518)
T ss_pred HHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhh-ccCCcEEEEEcccchHHH
Confidence 888887666544333345555555433211 111111111 112345999999988443
Q ss_pred cc-ccccCCCCcEEEEcCccccCCccchh------cc----CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCC
Q 043990 311 SS-KFSCSESCDLLICDEAHRLKNDQTLT------NR----NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPT 379 (911)
Q Consensus 311 ~~-~~~~~~~~~lVIlDEAH~lKN~~s~~------~~----N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~ 379 (911)
.. .-.....||+||||||||--...-.. ++ .++.-.-.|.....|.+++....-+..=.. ....
T Consensus 295 ~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s-----~~l~ 369 (1518)
T COG4889 295 KEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHS-----AELS 369 (1518)
T ss_pred HHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcc-----ceee
Confidence 22 11225689999999999965432111 01 334444444444555554432211110000 0000
Q ss_pred CcHHHHHhhhhHHHHHHHHhhHHhhhhc-HHHHhcc-CCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhH
Q 043990 380 ATEEEKKLGIERSSELSAKVNQFILRRT-NALLSNH-LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKI 457 (911)
Q Consensus 380 ~~~~~~~~~~~~~~eL~~~l~~~ilRRt-k~~v~~~-LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~ 457 (911)
+...+. +..+-+.|-- -+.|... |....+.+..+.-.-.+..+- ..+.... .-
T Consensus 370 SMDDe~------------~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~----------~~~~~~~---~~ 424 (1518)
T COG4889 370 SMDDEL------------TFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQ----------SVLSGPS---KG 424 (1518)
T ss_pred ccchhh------------hhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhh----------hhccCcc---cc
Confidence 011111 1222222211 1122222 333334443332111111111 1111100 00
Q ss_pred HHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCC
Q 043990 458 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDD 537 (911)
Q Consensus 458 l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~ 537 (911)
|..-..-+-+-+|-.|........... ......+-++......+.+.. .+
T Consensus 425 L~~dd~~kIvG~wnGlakr~g~~n~~~----------------------------~~~~d~ap~~RAIaF~k~I~t--SK 474 (1518)
T COG4889 425 LALDDVSKIVGCWNGLAKRNGEDNDLK----------------------------NIKADTAPMQRAIAFAKDIKT--SK 474 (1518)
T ss_pred cchhhhhhhhhhhhhhhhhcccccccc----------------------------CCcCCchHHHHHHHHHHhhHH--HH
Confidence 000000011122222221111000000 000001112222222222221 01
Q ss_pred eEEEEEcchHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEE
Q 043990 538 RIVLVSNYTQTLDLFAQLCRE----RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL 613 (911)
Q Consensus 538 KVIIFSq~~~~ld~L~~~L~~----~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl 613 (911)
+ |--+|...++.....|.+ ..+.+--+||+|...+|.++..--+.-..+...+|-..+++++|+++++-+-|||
T Consensus 475 ~--i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF 552 (1518)
T COG4889 475 Q--IAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF 552 (1518)
T ss_pred H--HHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE
Confidence 0 011222222222222222 2345667899999999976665444324455678999999999999999999999
Q ss_pred eCCCCCcchHHHHHHhhhhcCCcc-cEEEEEEE
Q 043990 614 FDPDWNPANDKQAAARVWRDGQKK-RVFIYRFL 645 (911)
Q Consensus 614 ~Dp~WNPa~~~QAigR~~RiGQkk-~V~VyrLi 645 (911)
|||--+-....||+||+.|-...| .-||.--|
T Consensus 553 f~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 553 FDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred ecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 999988888899999999965443 34554433
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.60 E-value=7.9e-14 Score=176.87 Aligned_cols=317 Identities=13% Similarity=0.142 Sum_probs=175.6
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|+|+.++..++. .+..++..+||+|||..++.++..+... ..++|||+|+ .|+.|+.++
T Consensus 78 ~p~~iQ~~~i~~il~----------G~d~vi~ApTGsGKT~f~l~~~~~l~~~-------g~~vLIL~PTreLa~Qi~~~ 140 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLR----------GDSFAIIAPTGVGKTTFGLAMSLFLAKK-------GKRCYIILPTTLLVIQVAEK 140 (1171)
T ss_pred CCcHHHHHHHHHHhC----------CCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEeCHHHHHHHHHHH
Confidence 466999999987753 2466888999999998665544444332 2479999998 677999999
Q ss_pred HHHHhCC-CeE---EEEecCCcchh-hhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccc
Q 043990 262 IKKWVGG-RVQ---LIALCESTRDD-VVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 262 i~k~~~~-~~~---v~~~~~~~r~~-~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
+.++... .+. +..++++.... ....+..+. .+.++|+|+|++.+..+...+. . .+++||+||||++-....
T Consensus 141 l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~--~~~~dIlV~Tp~rL~~~~~~l~-~-~~~~iVvDEaD~~L~~~k 216 (1171)
T TIGR01054 141 ISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIE--NGDFDILITTTMFLSKNYDELG-P-KFDFIFVDDVDALLKASK 216 (1171)
T ss_pred HHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHh--cCCCCEEEECHHHHHHHHHHhc-C-CCCEEEEeChHhhhhccc
Confidence 9998753 222 22344443221 111111111 1347899999999977665543 2 799999999999854221
Q ss_pred hhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCC
Q 043990 337 LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLP 416 (911)
Q Consensus 337 ~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP 416 (911)
++.-++.++.|.. ......+.. +..+.. ....+...++..++. .+|
T Consensus 217 -----~vd~il~llGF~~-------e~i~~il~~-~~~~~~--------~~~~~~~~~~~~~~~-------------~~~ 262 (1171)
T TIGR01054 217 -----NVDKLLKLLGFSE-------ELIEKAWKL-IRLRLK--------LYRALHAKKRLELLE-------------AIP 262 (1171)
T ss_pred -----cHHHHHHHcCCCH-------HHHHHHHHH-hhhccc--------cchHHHHHHHHHHHH-------------hhh
Confidence 1333443333310 000000000 000000 000001111111111 233
Q ss_pred CcE-EEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcC
Q 043990 417 PKI-IEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF 495 (911)
Q Consensus 417 ~k~-~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~ 495 (911)
.+. ...+.+..|...+..-..+ +.. ++...+.... .......
T Consensus 263 ~~~q~~li~~SAT~~p~~~~~~l-----------------------------~r~--ll~~~v~~~~---~~~r~I~--- 305 (1171)
T TIGR01054 263 GKKRGCLIVSSATGRPRGKRAKL-----------------------------FRE--LLGFEVGGGS---DTLRNVV--- 305 (1171)
T ss_pred hccCcEEEEEeCCCCccccHHHH-----------------------------ccc--ccceEecCcc---ccccceE---
Confidence 221 1222233331111000000 000 0000000000 0000000
Q ss_pred CcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcch---HHHHHHHHHHHHcCCCEEEEeCCCCH
Q 043990 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYT---QTLDLFAQLCRERRYPYLRLDGTTSI 572 (911)
Q Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~---~~ld~L~~~L~~~gi~~~~LdGsts~ 572 (911)
........+...|.+++..+ +.++|||++.. +.++.|...|...|+++..++|.++
T Consensus 306 ----------------~~~~~~~~~~~~L~~ll~~l----~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~- 364 (1171)
T TIGR01054 306 ----------------DVYVEDEDLKETLLEIVKKL----GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP- 364 (1171)
T ss_pred ----------------EEEEecccHHHHHHHHHHHc----CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC-
Confidence 00011122344566666543 46899999998 9999999999999999999999987
Q ss_pred HHHHHHHHhhcCCCCCceEEEEe----cCCcccccCCCC-CCEEEEeCCCC
Q 043990 573 SKRQKLVNHFNDPSKNEFVFLLS----SKAGGCGLNLIG-GNRLVLFDPDW 618 (911)
Q Consensus 573 ~~R~~iv~~Fn~~~~~~~v~LlS----tkagg~GLNL~~-An~VIl~Dp~W 618 (911)
++.+++|+++..+ +|++ |+++++|||++. .++||+||+|-
T Consensus 365 ---~~~l~~Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 ---KEDYEKFAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---HHHHHHHHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 3689999987655 6666 589999999998 79999999873
No 94
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.59 E-value=1.3e-13 Score=169.32 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=92.9
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHH---cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEE
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRE---RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRL 611 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~---~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~V 611 (911)
...++|||++....++.+...|.. .++.++.|+|+++.++|.++++.|.++. ..+|++|.++++||++.++++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~---rkVlVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR---RKVVLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC---eEEEEecchHhhcccccCceEE
Confidence 356899999999999999999987 4788999999999999999999998743 3589999999999999999999
Q ss_pred EEeCCC----CCcch--------------HHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 612 VLFDPD----WNPAN--------------DKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 612 Il~Dp~----WNPa~--------------~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
|.++.+ +||.. +.||.||++|. ++-.+|||+++.
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 998864 45544 78999999986 677789998754
No 95
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.59 E-value=6.3e-13 Score=161.71 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHc--CCCEEEEeCCCC--HHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCC---CCc
Q 043990 548 TLDLFAQLCRER--RYPYLRLDGTTS--ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD---WNP 620 (911)
Q Consensus 548 ~ld~L~~~L~~~--gi~~~~LdGsts--~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~---WNP 620 (911)
-.+.+++.|... ++++.++||.+. ..++.+++++|.+++.+ +|++|...+.|+|++.++.|+++|.+ ..|
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCC
Confidence 356777777776 789999999986 45799999999987665 89999999999999999999888765 233
Q ss_pred ---------chHHHHHHhhhhcCCcccEEEEEE
Q 043990 621 ---------ANDKQAAARVWRDGQKKRVFIYRF 644 (911)
Q Consensus 621 ---------a~~~QAigR~~RiGQkk~V~VyrL 644 (911)
..+.|++||++|.|....|.|...
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCCCCCEEEEEeC
Confidence 578999999999888877776543
No 96
>PRK14701 reverse gyrase; Provisional
Probab=99.58 E-value=1.4e-13 Score=178.00 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHH---HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec--
Q 043990 522 HVLARLLGHLRQRTDDRIVLVSNYTQT---LDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS-- 596 (911)
Q Consensus 522 ~~L~~LL~~l~~~~~~KVIIFSq~~~~---ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt-- 596 (911)
..|.+++..+ +..+|||++.... ++.+...|...|+++..++|. |.+.+++|.++... +|++|
T Consensus 320 ~~L~~ll~~~----g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~---VLVaT~s 387 (1638)
T PRK14701 320 EHVRELLKKL----GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID---YLIGVAT 387 (1638)
T ss_pred HHHHHHHHhC----CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC---EEEEecC
Confidence 3455565542 5789999998764 589999999999999999994 88999999997665 77777
Q ss_pred --CCcccccCCCC-CCEEEEeCCCC---CcchHHHH-------------HHhhhhcCCc
Q 043990 597 --KAGGCGLNLIG-GNRLVLFDPDW---NPANDKQA-------------AARVWRDGQK 636 (911)
Q Consensus 597 --kagg~GLNL~~-An~VIl~Dp~W---NPa~~~QA-------------igR~~RiGQk 636 (911)
.++++|||++. ..+|||||.|- |...+.|. +||+.|.|..
T Consensus 388 ~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 388 YYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 57899999998 99999999997 65555554 4999999954
No 97
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.56 E-value=3.1e-13 Score=156.70 Aligned_cols=310 Identities=15% Similarity=0.247 Sum_probs=201.1
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~ 260 (911)
-.|-..|+.++.-+..=. ......+. +|--|+|+|||++|+..++.....| ..+.+.+|+.++ .|-..
T Consensus 261 F~LT~aQ~~vi~EI~~Dl---~~~~~M~R-LlQGDVGSGKTvVA~laml~ai~~G-------~Q~ALMAPTEILA~QH~~ 329 (677)
T COG1200 261 FKLTNAQKRVIKEILADL---ASPVPMNR-LLQGDVGSGKTVVALLAMLAAIEAG-------YQAALMAPTEILAEQHYE 329 (677)
T ss_pred CCccHHHHHHHHHHHhhh---cCchhhHH-HhccCcCCCHHHHHHHHHHHHHHcC-------CeeEEeccHHHHHHHHHH
Confidence 357788999988775422 12223333 7788999999999998888887776 357899999877 77899
Q ss_pred HHHHHhCC-CeEEEEecCCc----chhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCcc
Q 043990 261 EIKKWVGG-RVQLIALCEST----RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~----r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~ 335 (911)
.+.+|++. .+.+..+.|+. +......+. .+..+|||-|+..+..... ..+..+||+||=||+.-.+
T Consensus 330 ~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~-----~G~~~ivVGTHALiQd~V~----F~~LgLVIiDEQHRFGV~Q 400 (677)
T COG1200 330 SLRKWLEPLGIRVALLTGSLKGKARKEILEQLA-----SGEIDIVVGTHALIQDKVE----FHNLGLVIIDEQHRFGVHQ 400 (677)
T ss_pred HHHHHhhhcCCeEEEeecccchhHHHHHHHHHh-----CCCCCEEEEcchhhhccee----ecceeEEEEeccccccHHH
Confidence 99999985 56665555543 344443333 2567899999998865433 3468899999999972110
Q ss_pred chhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccC
Q 043990 336 TLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHL 415 (911)
Q Consensus 336 s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~L 415 (911)
...|.+.=. .
T Consensus 401 --------------------------------------------------------R~~L~~KG~-------------~- 410 (677)
T COG1200 401 --------------------------------------------------------RLALREKGE-------------Q- 410 (677)
T ss_pred --------------------------------------------------------HHHHHHhCC-------------C-
Confidence 011111100 0
Q ss_pred CCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcC
Q 043990 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF 495 (911)
Q Consensus 416 P~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~ 495 (911)
..++....-||.=|.+--.+...- .. .. ++.+
T Consensus 411 ---~Ph~LvMTATPIPRTLAlt~fgDl----------dv---------------------S~--------------IdEl 442 (677)
T COG1200 411 ---NPHVLVMTATPIPRTLALTAFGDL----------DV---------------------SI--------------IDEL 442 (677)
T ss_pred ---CCcEEEEeCCCchHHHHHHHhccc----------cc---------------------hh--------------hccC
Confidence 123333444554444322111000 00 00 0001
Q ss_pred CcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHH--------HHHHHHHHHHc--CCCEEE
Q 043990 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQT--------LDLFAQLCRER--RYPYLR 565 (911)
Q Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~--------ld~L~~~L~~~--gi~~~~ 565 (911)
|+ ++ ......++....+-.++..+-.++. .|+++.+.|.-.+. +..+...|... ++++..
T Consensus 443 P~----GR----kpI~T~~i~~~~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL 512 (677)
T COG1200 443 PP----GR----KPITTVVIPHERRPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGL 512 (677)
T ss_pred CC----CC----CceEEEEeccccHHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEE
Confidence 11 00 0111223333444455556666665 48999998876543 33333444432 567899
Q ss_pred EeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCC-CCcchHHHHHHhhhhcCCcccEEEE
Q 043990 566 LDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD-WNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 566 LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~-WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+||.|+.++++.++.+|+++..+ +|+||.+..+|+|++.|+.+|++++. +--+...|-.||++|-+...-|..+
T Consensus 513 ~HGrm~~~eKd~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll 587 (677)
T COG1200 513 VHGRMKPAEKDAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLL 587 (677)
T ss_pred EecCCChHHHHHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEE
Confidence 99999999999999999997666 99999999999999999999999986 6778999999999997766666543
No 98
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.55 E-value=6.3e-15 Score=129.03 Aligned_cols=78 Identities=23% Similarity=0.465 Sum_probs=73.8
Q ss_pred HHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhc
Q 043990 554 QLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRD 633 (911)
Q Consensus 554 ~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~Ri 633 (911)
++|+..|+++..++|.++..+|..+++.|+.+... +|++|.++++|+|++.+++||+|+++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 46888999999999999999999999999986654 899999999999999999999999999999999999999998
Q ss_pred C
Q 043990 634 G 634 (911)
Q Consensus 634 G 634 (911)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 99
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.54 E-value=1.3e-13 Score=169.57 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=93.1
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHH---cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEE
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRE---RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRL 611 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~---~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~V 611 (911)
....+|||.+....++.+...|.. .++.+..++|+++.++|.+++..|.++ ...+|++|..+++||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G---~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG---RRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC---CeEEEEecchHHhcccccCceEE
Confidence 467899999999999999999987 578899999999999999999999874 34599999999999999999999
Q ss_pred EEeCCC----CCc--------------chHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 043990 612 VLFDPD----WNP--------------ANDKQAAARVWRDGQKKRVFIYRFLSTGTI 650 (911)
Q Consensus 612 Il~Dp~----WNP--------------a~~~QAigR~~RiGQkk~V~VyrLi~~gTI 650 (911)
|.++.. |+| +.+.||.||++|. ++-.+|||+++...
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 996643 322 4688999999886 57889999886533
No 100
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.54 E-value=2.7e-13 Score=151.87 Aligned_cols=335 Identities=16% Similarity=0.194 Sum_probs=205.4
Q ss_pred cccccChhhh--------ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHH-HHHHHHHHhcCCCCCCC
Q 043990 172 VPITVDPLLV--------RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQS-IALLYTLLCQGFDGKPM 242 (911)
Q Consensus 172 ~~v~v~p~l~--------~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqa-Iali~~ll~~g~~~~p~ 242 (911)
..+.+|+.+. ..|.|-|..+|.. |+++. ..-++.-.|++|||+++ +|=|..++..
T Consensus 197 deLdipe~fk~~lk~~G~~eLlPVQ~laVe~------GLLeG---~nllVVSaTasGKTLIgElAGi~~~l~~------- 260 (830)
T COG1202 197 DELDIPEKFKRMLKREGIEELLPVQVLAVEA------GLLEG---ENLLVVSATASGKTLIGELAGIPRLLSG------- 260 (830)
T ss_pred cccCCcHHHHHHHHhcCcceecchhhhhhhh------ccccC---CceEEEeccCCCcchHHHhhCcHHHHhC-------
Confidence 3466777664 4689999998875 45532 34478889999999975 3444444443
Q ss_pred CceEEEEeCch-hhHHHHHHHHHHhC-CCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCC
Q 043990 243 VKKAIIVTPTS-LVSNWEAEIKKWVG-GRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESC 320 (911)
Q Consensus 243 ~~~~LIV~P~s-Ll~qW~~Ei~k~~~-~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~ 320 (911)
.++.|.++|.- |..|=..+|..-.. -.+.+-.-.|..+-...... .-.......+|++-||+-+-.....-....++
T Consensus 261 g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~p-v~~~t~~dADIIVGTYEGiD~lLRtg~~lgdi 339 (830)
T COG1202 261 GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP-VVVDTSPDADIIVGTYEGIDYLLRTGKDLGDI 339 (830)
T ss_pred CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCc-cccCCCCCCcEEEeechhHHHHHHcCCccccc
Confidence 36899999974 44555667765543 23444222233332222111 00112245789999999774322221235689
Q ss_pred cEEEEcCccccCCccchhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhh
Q 043990 321 DLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVN 400 (911)
Q Consensus 321 ~lVIlDEAH~lKN~~s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~ 400 (911)
+.|||||.|.+....-- -+|.-+.+-+.++.|+.- | |.- .++ ..+-.+|...++
T Consensus 340 GtVVIDEiHtL~deERG---~RLdGLI~RLr~l~~~AQ-----~-------i~L----SAT-------VgNp~elA~~l~ 393 (830)
T COG1202 340 GTVVIDEIHTLEDEERG---PRLDGLIGRLRYLFPGAQ-----F-------IYL----SAT-------VGNPEELAKKLG 393 (830)
T ss_pred ceEEeeeeeeccchhcc---cchhhHHHHHHHhCCCCe-----E-------EEE----Eee-------cCChHHHHHHhC
Confidence 99999999999763211 235666666666666320 0 000 000 000112222222
Q ss_pred HHhhhhcHHHHhccCCCcEE-EEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhh
Q 043990 401 QFILRRTNALLSNHLPPKII-EVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIK 479 (911)
Q Consensus 401 ~~ilRRtk~~v~~~LP~k~~-~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~ 479 (911)
--++. -..-|...+ ++++|.=
T Consensus 394 a~lV~------y~~RPVplErHlvf~~~---------------------------------------------------- 415 (830)
T COG1202 394 AKLVL------YDERPVPLERHLVFARN---------------------------------------------------- 415 (830)
T ss_pred CeeEe------ecCCCCChhHeeeeecC----------------------------------------------------
Confidence 11000 001121111 2222221
Q ss_pred cCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhh-----cCCCeEEEEEcchHHHHHHHH
Q 043990 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ-----RTDDRIVLVSNYTQTLDLFAQ 554 (911)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~-----~~~~KVIIFSq~~~~ld~L~~ 554 (911)
.+.|...+.+|++.-.. .-...+|||++++.-.+.|+.
T Consensus 416 -------------------------------------e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~ 458 (830)
T COG1202 416 -------------------------------------ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELAD 458 (830)
T ss_pred -------------------------------------chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHH
Confidence 13333333333332111 113478999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEe-----CCCCCcchHHHHHHh
Q 043990 555 LCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLF-----DPDWNPANDKQAAAR 629 (911)
Q Consensus 555 ~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~-----Dp~WNPa~~~QAigR 629 (911)
+|..+|++..-+|++++..+|..+-..|.++.- ..+++|.|.|-|+|+++ +.|||= --|-+|..+.|..||
T Consensus 459 ~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l---~~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GR 534 (830)
T COG1202 459 ALTGKGLKAAPYHAGLPYKERKSVERAFAAQEL---AAVVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGR 534 (830)
T ss_pred HhhcCCcccccccCCCcHHHHHHHHHHHhcCCc---ceEeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcc
Confidence 999999999999999999999999999998544 48999999999999985 555542 235699999999999
Q ss_pred hhhcCCcccEEEEEEEeCC
Q 043990 630 VWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 630 ~~RiGQkk~V~VyrLi~~g 648 (911)
++|.|-...-.||-++-.|
T Consensus 535 AGRp~yHdrGkVyllvepg 553 (830)
T COG1202 535 AGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCCCcccCceEEEEecCC
Confidence 9999988777777777554
No 101
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.54 E-value=2.3e-13 Score=165.48 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=96.3
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|+|+|+++|.-.+ . ...++|++-+||+|||+.|...|...+..+ ..+++-|||. +|+.+=.++
T Consensus 31 el~~~qq~av~~~~------~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~------~~k~vYivPlkALa~Ek~~~ 95 (766)
T COG1204 31 ELFNPQQEAVEKGL------L---SDENVLISAPTGSGKTLIALLAILSTLLEG------GGKVVYIVPLKALAEEKYEE 95 (766)
T ss_pred HhhHHHHHHhhccc------c---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc------CCcEEEEeChHHHHHHHHHH
Confidence 78999999997653 2 246889999999999999998888777664 3589999997 788888999
Q ss_pred HHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHh---hccccccCCCCcEEEEcCccccCCc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRM---HSSKFSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~---~~~~~~~~~~~~lVIlDEAH~lKN~ 334 (911)
+.+|-..+++|....|...... .....++|+|+|||.+-. +...+ ...+++||+||+|.+...
T Consensus 96 ~~~~~~~GirV~~~TgD~~~~~--------~~l~~~~ViVtT~EK~Dsl~R~~~~~--~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 96 FSRLEELGIRVGISTGDYDLDD--------ERLARYDVIVTTPEKLDSLTRKRPSW--IEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred hhhHHhcCCEEEEecCCcccch--------hhhccCCEEEEchHHhhHhhhcCcch--hhcccEEEEeeeeecCCc
Confidence 9966665677777776654321 112467899999998832 22222 357899999999999776
No 102
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.53 E-value=2.7e-14 Score=154.88 Aligned_cols=317 Identities=16% Similarity=0.160 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHH---HHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNW---EAE 261 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW---~~E 261 (911)
|.|+..+.-.++.. -.+=-.-+|+|||..-+.-+...+.... ...-+.||+.|+.-+ .|- ..+
T Consensus 46 piqRKTipliLe~~----------dvv~martgsgktaaf~ipm~e~Lk~~s---~~g~RalilsptreLa~qtlkvvkd 112 (529)
T KOG0337|consen 46 PIQRKTIPLILEGR----------DVVGMARTGSGKTAAFLIPMIEKLKSHS---QTGLRALILSPTRELALQTLKVVKD 112 (529)
T ss_pred chhcccccceeecc----------ccceeeecCCcchhhHHHHHHHHHhhcc---ccccceeeccCcHHHHHHHHHHHHH
Confidence 78888888765411 1111234899999988877776666542 123589999999544 443 334
Q ss_pred HHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccchhcc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTLTNR 340 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~~~~ 340 (911)
+.++++.+ ..+.+++....+.+..+ ...++|||+|+..+.-.... -.......+||+|||.+|
T Consensus 113 lgrgt~lr-~s~~~ggD~~eeqf~~l------~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrl--------- 176 (529)
T KOG0337|consen 113 LGRGTKLR-QSLLVGGDSIEEQFILL------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRL--------- 176 (529)
T ss_pred hccccchh-hhhhcccchHHHHHHHh------ccCCCEEEecCceeeeeehheeccccceeeeeehhhhHH---------
Confidence 44444322 22344555555544433 24678999999887422221 122456789999999998
Q ss_pred CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcEE
Q 043990 341 NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKII 420 (911)
Q Consensus 341 N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~ 420 (911)
++.-|. +.|++++. .+|....
T Consensus 177 --femgfq--------------------------------------------eql~e~l~-------------rl~~~~Q 197 (529)
T KOG0337|consen 177 --FEMGFQ--------------------------------------------EQLHEILS-------------RLPESRQ 197 (529)
T ss_pred --HhhhhH--------------------------------------------HHHHHHHH-------------hCCCcce
Confidence 111111 34555554 3555543
Q ss_pred EEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcccc
Q 043990 421 EVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMF 500 (911)
Q Consensus 421 ~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~ 500 (911)
.+.+-.--| + .+....|+-..+|.++...++........ ..
T Consensus 198 TllfSatlp--~--------------------------~lv~fakaGl~~p~lVRldvetkise~lk----~~------- 238 (529)
T KOG0337|consen 198 TLLFSATLP--R--------------------------DLVDFAKAGLVPPVLVRLDVETKISELLK----VR------- 238 (529)
T ss_pred EEEEeccCc--h--------------------------hhHHHHHccCCCCceEEeehhhhcchhhh----hh-------
Confidence 333211111 0 01112233344555554222211000000 00
Q ss_pred cCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Q 043990 501 SGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVN 580 (911)
Q Consensus 501 ~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~ 580 (911)
-..+....|..+|..++..... .++.|||+.....++++...|+..|+....+.|++.+..|..-+.
T Consensus 239 -----------f~~~~~a~K~aaLl~il~~~~~--~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~ 305 (529)
T KOG0337|consen 239 -----------FFRVRKAEKEAALLSILGGRIK--DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGR 305 (529)
T ss_pred -----------eeeeccHHHHHHHHHHHhcccc--ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccc
Confidence 0112336788888888887653 578999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeC
Q 043990 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLST 647 (911)
Q Consensus 581 ~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~ 647 (911)
+|+.+... +|+.|+.+++|++++.-+.||+||.+-.+..+.+|+||+.|.|.+- ..|-|++.
T Consensus 306 ~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~ 367 (529)
T KOG0337|consen 306 DFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAS 367 (529)
T ss_pred cccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEec
Confidence 99975444 8999999999999999999999999999999999999999998654 34555554
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=2e-12 Score=156.08 Aligned_cols=124 Identities=13% Similarity=0.194 Sum_probs=109.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 513 AWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 513 ~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
.+.....|..++.+.+..+.. .++.|||||.+....+.|..+|...|+++..|+|.....+|..+.+.|+.+ .+
T Consensus 422 v~~t~~~k~~av~~~i~~~~~-~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-----~V 495 (896)
T PRK13104 422 VYLTQADKFQAIIEDVRECGV-RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-----AV 495 (896)
T ss_pred EEcCHHHHHHHHHHHHHHHHh-CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-----cE
Confidence 344557788888888877776 799999999999999999999999999999999999999999999999985 28
Q ss_pred EEecCCcccccCCC--------------------------------------CCCEEEEeCCCCCcchHHHHHHhhhhcC
Q 043990 593 LLSSKAGGCGLNLI--------------------------------------GGNRLVLFDPDWNPANDKQAAARVWRDG 634 (911)
Q Consensus 593 LlStkagg~GLNL~--------------------------------------~An~VIl~Dp~WNPa~~~QAigR~~RiG 634 (911)
+|+|..+|+|+|+. |.=+||.-+.+-|-..+.|-.||++|.|
T Consensus 496 tIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQG 575 (896)
T PRK13104 496 TIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQG 575 (896)
T ss_pred EEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCC
Confidence 99999999999975 3458999999999999999999999999
Q ss_pred CcccEEEE
Q 043990 635 QKKRVFIY 642 (911)
Q Consensus 635 Qkk~V~Vy 642 (911)
..-....|
T Consensus 576 DPGss~f~ 583 (896)
T PRK13104 576 DPGSSRFY 583 (896)
T ss_pred CCCceEEE
Confidence 98765555
No 104
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=5.3e-13 Score=156.90 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=75.0
Q ss_pred HHHHHHHHHHc--CCCEEEEeCCCCHHHH--HHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCC---Cc-
Q 043990 549 LDLFAQLCRER--RYPYLRLDGTTSISKR--QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDW---NP- 620 (911)
Q Consensus 549 ld~L~~~L~~~--gi~~~~LdGsts~~~R--~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~W---NP- 620 (911)
.+.+++.|... +.++.++|+.++..++ .++++.|.+++.+ +|++|...+.|+|+..++.|+++|.+- .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 46777777776 7899999999876655 8999999986655 899999999999999999998776652 23
Q ss_pred --------chHHHHHHhhhhcCCcccEEEEE
Q 043990 621 --------ANDKQAAARVWRDGQKKRVFIYR 643 (911)
Q Consensus 621 --------a~~~QAigR~~RiGQkk~V~Vyr 643 (911)
..+.|+.||++|.+....|.|..
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 56899999999988877776553
No 105
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=8.5e-14 Score=150.49 Aligned_cols=110 Identities=19% Similarity=0.261 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCc
Q 043990 520 KMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599 (911)
Q Consensus 520 Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkag 599 (911)
|+..|..+... -...+||++...-++.|...|..+|+....++|.|.+.+|..++..|+.+++. +||+|...
T Consensus 252 k~~~l~dl~~~-----~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlIttdl~ 323 (397)
T KOG0327|consen 252 KLDTLCDLYRR-----VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITTDLL 323 (397)
T ss_pred cccHHHHHHHh-----hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeecccc
Confidence 77777777772 35789999999999999999999999999999999999999999999997665 89999999
Q ss_pred ccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcc
Q 043990 600 GCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637 (911)
Q Consensus 600 g~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk 637 (911)
++|++++..+-||+||.|-|..+|.+|+||++|.|-+-
T Consensus 324 argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg 361 (397)
T KOG0327|consen 324 ARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG 361 (397)
T ss_pred ccccchhhcceeeeeccccchhhhhhhcccccccCCCc
Confidence 99999999999999999999999999999999999663
No 106
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=5.9e-12 Score=151.32 Aligned_cols=122 Identities=13% Similarity=0.184 Sum_probs=105.3
Q ss_pred cccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 043990 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLL 594 (911)
Q Consensus 515 ~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~Ll 594 (911)
.....|..++.+.+..... .+..|||||++....+.|...|...|+++..|+|.+...++.-+..+++.+ .++|
T Consensus 420 ~t~~~K~~al~~~i~~~~~-~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g-----~VtI 493 (796)
T PRK12906 420 PTLDSKFNAVVKEIKERHA-KGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG-----AVTI 493 (796)
T ss_pred cCHHHHHHHHHHHHHHHHh-CCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc-----eEEE
Confidence 3446788888888877665 689999999999999999999999999999999999877777777777653 3899
Q ss_pred ecCCcccccCCC---CCC-----EEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 595 SSKAGGCGLNLI---GGN-----RLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 595 Stkagg~GLNL~---~An-----~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+|..+|+|+|+. ++. +||.++.+-|...+.|++||++|.|..-....|
T Consensus 494 ATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~ 549 (796)
T PRK12906 494 ATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 549 (796)
T ss_pred EeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEE
Confidence 999999999994 566 999999999999999999999999998765443
No 107
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.44 E-value=7.1e-12 Score=152.95 Aligned_cols=309 Identities=18% Similarity=0.298 Sum_probs=199.2
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHH-HHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSN-WEAEI 262 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~q-W~~Ei 262 (911)
--|-|..+|.-..+=.+. ....-. +||-|+|.|||=+|+-.+......| +-+.|+||+.|+.+ -.+-|
T Consensus 595 ET~DQl~AI~eVk~DM~~---~kpMDR-LiCGDVGFGKTEVAmRAAFkAV~~G-------KQVAvLVPTTlLA~QHy~tF 663 (1139)
T COG1197 595 ETPDQLKAIEEVKRDMES---GKPMDR-LICGDVGFGKTEVAMRAAFKAVMDG-------KQVAVLVPTTLLAQQHYETF 663 (1139)
T ss_pred CCHHHHHHHHHHHHHhcc---CCcchh-eeecCcCCcHHHHHHHHHHHHhcCC-------CeEEEEcccHHhHHHHHHHH
Confidence 446799999887663321 112223 8999999999999886665444333 57999999998844 33444
Q ss_pred -HHHhCCCeEEEEecCCc----chhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccch
Q 043990 263 -KKWVGGRVQLIALCEST----RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 263 -~k~~~~~~~v~~~~~~~----r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
.+|.+..+++-.+..-. .......+. .++.+|||-|+..+..... ..+.+||||||=||+.=..
T Consensus 664 keRF~~fPV~I~~LSRF~s~kE~~~il~~la-----~G~vDIvIGTHrLL~kdv~----FkdLGLlIIDEEqRFGVk~-- 732 (1139)
T COG1197 664 KERFAGFPVRIEVLSRFRSAKEQKEILKGLA-----EGKVDIVIGTHRLLSKDVK----FKDLGLLIIDEEQRFGVKH-- 732 (1139)
T ss_pred HHHhcCCCeeEEEecccCCHHHHHHHHHHHh-----cCCccEEEechHhhCCCcE----EecCCeEEEechhhcCccH--
Confidence 45555566665554221 222333332 3778999999998865543 3468999999999973210
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPP 417 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~ 417 (911)
.+++++|+
T Consensus 733 ---------------------------------------------------KEkLK~Lr--------------------- 740 (1139)
T COG1197 733 ---------------------------------------------------KEKLKELR--------------------- 740 (1139)
T ss_pred ---------------------------------------------------HHHHHHHh---------------------
Confidence 11222222
Q ss_pred cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 418 KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 418 k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
....+....-||.=|.++..+.--.. |--+.. ||
T Consensus 741 ~~VDvLTLSATPIPRTL~Msm~GiRd--------------------lSvI~T--------------------------PP 774 (1139)
T COG1197 741 ANVDVLTLSATPIPRTLNMSLSGIRD--------------------LSVIAT--------------------------PP 774 (1139)
T ss_pred ccCcEEEeeCCCCcchHHHHHhcchh--------------------hhhccC--------------------------CC
Confidence 12335556667777777765421100 000000 00
Q ss_pred ccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc--CCCEEEEeCCCCHHHH
Q 043990 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER--RYPYLRLDGTTSISKR 575 (911)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~--gi~~~~LdGsts~~~R 575 (911)
.. +.. -..++......-+=..+++++.. |..|-...+..+.+..+...|+.. ..++...||.|+..+-
T Consensus 775 ~~---R~p-----V~T~V~~~d~~~ireAI~REl~R--gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eL 844 (1139)
T COG1197 775 ED---RLP-----VKTFVSEYDDLLIREAILRELLR--GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMREREL 844 (1139)
T ss_pred CC---Ccc-----eEEEEecCChHHHHHHHHHHHhc--CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHH
Confidence 00 000 00000001111122335555543 678888899999999999888876 4568889999999999
Q ss_pred HHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCC-CCcchHHHHHHhhhhcCCcccEEEEEEEeC
Q 043990 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD-WNPANDKQAAARVWRDGQKKRVFIYRFLST 647 (911)
Q Consensus 576 ~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~-WNPa~~~QAigR~~RiGQkk~V~VyrLi~~ 647 (911)
.+++..|.++.-+ +|+||.....|||++.||++|+-+.+ +--+...|-.||++|- ++.-|.|-++..
T Consensus 845 E~vM~~F~~g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~ 912 (1139)
T COG1197 845 EEVMLDFYNGEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPP 912 (1139)
T ss_pred HHHHHHHHcCCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc--cceEEEEEeecC
Confidence 9999999986655 89999999999999999999998876 6778999999999995 456677766653
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.43 E-value=3.2e-11 Score=145.33 Aligned_cols=134 Identities=12% Similarity=0.109 Sum_probs=109.8
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
..+++..|..-|..+.. .+.++|||+.....++.|...|...|+++..++|.++..+|.+++..|+.+. ..+|+++
T Consensus 424 ~~~qi~~Ll~eI~~~~~-~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~---i~VLV~t 499 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVA-RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGE---FDVLVGI 499 (655)
T ss_pred ccchHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCC---ceEEEEc
Confidence 45677777776666554 5889999999999999999999999999999999999999999999998754 3588999
Q ss_pred CCcccccCCCCCCEEEEeC-----CCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCC--HHHHHHHH
Q 043990 597 KAGGCGLNLIGGNRLVLFD-----PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGT--IEEKVYQR 657 (911)
Q Consensus 597 kagg~GLNL~~An~VIl~D-----p~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gT--IEEkI~~r 657 (911)
..+++|++++.++.||++| .+-+...+.|++||++|.. . ..++-|+...| +...|.+.
T Consensus 500 ~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 500 NLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred ChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999999999 4557889999999999973 2 33455555444 44544443
No 109
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.43 E-value=1.2e-11 Score=155.25 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCC---EEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecC
Q 043990 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP---YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSK 597 (911)
Q Consensus 521 l~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~---~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStk 597 (911)
+..+...+..+......++|||++....++.+...|...+++ +..++|+++.++|.++.+.+ +...+|++|.
T Consensus 271 l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATN 345 (1294)
T PRK11131 271 LQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATN 345 (1294)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEecc
Confidence 333444444443335678999999999999999999998876 56789999999999987653 2346899999
Q ss_pred CcccccCCCCCCEEEEeC---------------CCCCc---chHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 043990 598 AGGCGLNLIGGNRLVLFD---------------PDWNP---ANDKQAAARVWRDGQKKRVFIYRFLSTGTI 650 (911)
Q Consensus 598 agg~GLNL~~An~VIl~D---------------p~WNP---a~~~QAigR~~RiGQkk~V~VyrLi~~gTI 650 (911)
++++||++.+.++||.++ .+-.| +.+.||.||++|. ++-.+|+|++....
T Consensus 346 IAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 346 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred HHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 999999999999999974 23233 6799999999997 46778899886543
No 110
>PRK09694 helicase Cas3; Provisional
Probab=99.43 E-value=7e-11 Score=145.48 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcC---CCEEEEeCCCCHHHH----HHHHHhh-cCCCCCceEEE
Q 043990 522 HVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERR---YPYLRLDGTTSISKR----QKLVNHF-NDPSKNEFVFL 593 (911)
Q Consensus 522 ~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~g---i~~~~LdGsts~~~R----~~iv~~F-n~~~~~~~v~L 593 (911)
.++..++..+. .+.+++||+|.++.+..+.+.|+..+ +++..++|.++..+| .++++.| +++......+|
T Consensus 548 ~~l~~i~~~~~--~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 548 TLLQRMIAAAN--AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 44555555543 47899999999999999999999775 678999999999999 5678899 44332223689
Q ss_pred EecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCc
Q 043990 594 LSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQK 636 (911)
Q Consensus 594 lStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQk 636 (911)
++|.+...|||+ .++.+|....| ...+.||+||+||-|.+
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 999999999999 57888886555 56899999999999875
No 111
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=2.4e-11 Score=146.61 Aligned_cols=122 Identities=13% Similarity=0.174 Sum_probs=106.6
Q ss_pred cccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 043990 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLL 594 (911)
Q Consensus 515 ~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~Ll 594 (911)
.....|+.++.+.+..+.. .+.+|||||+.....+.|...|...|+++..|+|. +.+|...+..|..+.. .++|
T Consensus 410 ~t~~~K~~aI~~~I~~~~~-~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g---~VtI 483 (830)
T PRK12904 410 KTEKEKFDAVVEDIKERHK-KGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPG---AVTI 483 (830)
T ss_pred ECHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCc---eEEE
Confidence 4456799999988887665 68999999999999999999999999999999996 6799999999987544 4999
Q ss_pred ecCCcccccCCC--------------------------------------CCCEEEEeCCCCCcchHHHHHHhhhhcCCc
Q 043990 595 SSKAGGCGLNLI--------------------------------------GGNRLVLFDPDWNPANDKQAAARVWRDGQK 636 (911)
Q Consensus 595 Stkagg~GLNL~--------------------------------------~An~VIl~Dp~WNPa~~~QAigR~~RiGQk 636 (911)
+|..+|+|+|+. |.=+||.-..+-|-..+.|..||++|.|..
T Consensus 484 ATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdp 563 (830)
T PRK12904 484 ATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDP 563 (830)
T ss_pred ecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCC
Confidence 999999999964 356899999999999999999999999998
Q ss_pred ccEEEE
Q 043990 637 KRVFIY 642 (911)
Q Consensus 637 k~V~Vy 642 (911)
-....|
T Consensus 564 Gss~f~ 569 (830)
T PRK12904 564 GSSRFY 569 (830)
T ss_pred CceeEE
Confidence 776655
No 112
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.42 E-value=3.9e-13 Score=117.65 Aligned_cols=81 Identities=28% Similarity=0.474 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhh
Q 043990 551 LFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARV 630 (911)
Q Consensus 551 ~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~ 630 (911)
.+...|...++.+..++|.++.++|..+++.|+++.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677788889999999999999999999999998544 6899999999999999999999999999999999999999
Q ss_pred hhcC
Q 043990 631 WRDG 634 (911)
Q Consensus 631 ~RiG 634 (911)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 113
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=6e-11 Score=143.01 Aligned_cols=124 Identities=14% Similarity=0.221 Sum_probs=109.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 513 AWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 513 ~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
.+.....|..++.+-+..+.. .|++|||||++....+.+..+|...|+++..|++..+..+|..+.+.|+.+. +
T Consensus 427 iy~t~~~K~~Aii~ei~~~~~-~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----V 500 (908)
T PRK13107 427 VYLTADEKYQAIIKDIKDCRE-RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----V 500 (908)
T ss_pred EEeCHHHHHHHHHHHHHHHHH-cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----E
Confidence 344557888888888887776 6999999999999999999999999999999999999999999999999742 8
Q ss_pred EEecCCcccccCCC-------------------------------------CCCEEEEeCCCCCcchHHHHHHhhhhcCC
Q 043990 593 LLSSKAGGCGLNLI-------------------------------------GGNRLVLFDPDWNPANDKQAAARVWRDGQ 635 (911)
Q Consensus 593 LlStkagg~GLNL~-------------------------------------~An~VIl~Dp~WNPa~~~QAigR~~RiGQ 635 (911)
+|+|..+|+|+|+. |.=+||.-..+-|-..+.|..||++|.|.
T Consensus 501 tIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGD 580 (908)
T PRK13107 501 TIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGD 580 (908)
T ss_pred EEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCC
Confidence 99999999999975 44589999999999999999999999998
Q ss_pred cccEEEE
Q 043990 636 KKRVFIY 642 (911)
Q Consensus 636 kk~V~Vy 642 (911)
.-....|
T Consensus 581 PGss~f~ 587 (908)
T PRK13107 581 AGSSRFY 587 (908)
T ss_pred CCceeEE
Confidence 8655444
No 114
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.36 E-value=2.7e-12 Score=130.31 Aligned_cols=137 Identities=23% Similarity=0.376 Sum_probs=90.1
Q ss_pred cChHHHHHHHHHHHHhhhcccccc-CCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAA-GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~-~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
.|||||.+++.-+.+.+. .. ..+.++|..+||+|||++++.++..+.. ++|||||. +|+.||..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~----~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLE----NKKEERRVLLNAPTGSGKTIIALALILELAR----------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHH----TTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH----hcCCCCCEEEEECCCCCcChhhhhhhhcccc----------ceeEecCHHHHHHHHHH
Confidence 689999999999987432 22 2466799999999999999998888753 79999998 88899999
Q ss_pred HHHHHhCCCeEEEEecC--Ccchhh----hccC-cccCCCCCCccEEEEehHHHHhhccc------------cccCCCCc
Q 043990 261 EIKKWVGGRVQLIALCE--STRDDV----VSGI-DSFTDPCSSLQVLIVSYETFRMHSSK------------FSCSESCD 321 (911)
Q Consensus 261 Ei~k~~~~~~~v~~~~~--~~r~~~----~~~~-~~~~~~~~~~~VvI~Sye~l~~~~~~------------~~~~~~~~ 321 (911)
++..+............ ...... .... ..........+++++++..+...... -.....++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 69 EFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 99888776443322211 000000 0000 00001124567999999998544321 01134689
Q ss_pred EEEEcCccccCC
Q 043990 322 LLICDEAHRLKN 333 (911)
Q Consensus 322 lVIlDEAH~lKN 333 (911)
+||+||||++.+
T Consensus 149 ~vI~DEaH~~~~ 160 (184)
T PF04851_consen 149 LVIIDEAHHYPS 160 (184)
T ss_dssp EEEEETGGCTHH
T ss_pred EEEEehhhhcCC
Confidence 999999999854
No 115
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.36 E-value=9e-11 Score=147.95 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCC---CEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 520 KMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRY---PYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 520 Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi---~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
++..+...+..+.......||||......++.+...|...++ .+..++|+++.++|.+++..+. ...+|++|
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~-----~rkIVLAT 337 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS-----GRRIVLAT 337 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC-----CceEEEec
Confidence 444555555554433457899999999999999999998754 4778999999999999855432 13589999
Q ss_pred CCcccccCCCCCCEEEEeCCC-----------------C-CcchHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 043990 597 KAGGCGLNLIGGNRLVLFDPD-----------------W-NPANDKQAAARVWRDGQKKRVFIYRFLSTGTIE 651 (911)
Q Consensus 597 kagg~GLNL~~An~VIl~Dp~-----------------W-NPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIE 651 (911)
.+++.||++.+..+||.++.. | +.+.+.||.||++|.| +-.+|||++....+
T Consensus 338 NIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 338 NVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred cHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 999999999999999987731 1 4468999999999987 77789999866443
No 116
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.34 E-value=9.5e-11 Score=142.14 Aligned_cols=124 Identities=11% Similarity=0.107 Sum_probs=105.3
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
..+++..|...|..+.. .+.++|||++....++.|...|...|+++..++|.++..+|..++..|+.+. ..+|+++
T Consensus 428 ~~~q~~~L~~~L~~~~~-~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~---i~vlV~t 503 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVA-KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE---FDVLVGI 503 (652)
T ss_pred ccccHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC---ceEEEEe
Confidence 35667777777766654 5899999999999999999999999999999999999999999999998754 3588999
Q ss_pred CCcccccCCCCCCEEEEeCC-----CCCcchHHHHHHhhhhcCCcccEEEEEEEeC
Q 043990 597 KAGGCGLNLIGGNRLVLFDP-----DWNPANDKQAAARVWRDGQKKRVFIYRFLST 647 (911)
Q Consensus 597 kagg~GLNL~~An~VIl~Dp-----~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~ 647 (911)
..+++|++++.++.||++|. +-++..+.|++||++|. . .-.++.|+..
T Consensus 504 ~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 504 NLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred CHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 99999999999999999996 45889999999999994 2 3345555553
No 117
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.29 E-value=1.6e-11 Score=150.78 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=100.8
Q ss_pred cCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEE
Q 043990 534 RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL 613 (911)
Q Consensus 534 ~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl 613 (911)
.++.-.||+|....+.+.+...|+..|++...+|++++.++|+.+-.+|..+. +.+++.|=|-|-|||-....-||+
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~---~~VivATVAFGMGIdK~DVR~ViH 559 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDK---IRVIVATVAFGMGIDKPDVRFVIH 559 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCC---CeEEEEEeeccCCCCCCceeEEEE
Confidence 36789999999999999999999999999999999999999999999999854 458888999999999999999999
Q ss_pred eCCCCCcchHHHHHHhhhhcCCcccEEEEEE
Q 043990 614 FDPDWNPANDKQAAARVWRDGQKKRVFIYRF 644 (911)
Q Consensus 614 ~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrL 644 (911)
|..|-+-.-|.|..||++|+|+-..|..|+=
T Consensus 560 ~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~ 590 (941)
T KOG0351|consen 560 YSLPKSFEGYYQEAGRAGRDGLPSSCVLLYG 590 (941)
T ss_pred CCCchhHHHHHHhccccCcCCCcceeEEecc
Confidence 9999999999999999999999999887753
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=1.1e-09 Score=132.68 Aligned_cols=122 Identities=11% Similarity=0.164 Sum_probs=104.8
Q ss_pred ccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEE
Q 043990 514 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFL 593 (911)
Q Consensus 514 ~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~L 593 (911)
+.....|+.+|.+.+..+.. .+.+|||||+++...+.|..+|...|+++..|++ .+.+|...|-.|..+.. .++
T Consensus 577 y~t~~eK~~Ali~~I~~~~~-~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g---~Vt 650 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQK-KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG---AVT 650 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhh-CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC---eEE
Confidence 34445799999999988765 6899999999999999999999999999999997 57799999999987544 499
Q ss_pred EecCCcccccCCC---CCC-----EEEEeCCCCCcchHHHHHHhhhhcCCcccEEE
Q 043990 594 LSSKAGGCGLNLI---GGN-----RLVLFDPDWNPANDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 594 lStkagg~GLNL~---~An-----~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~V 641 (911)
|+|..+|+|+|+. ++. +||.++.+-+...+.|++||++|.|..-....
T Consensus 651 IATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f 706 (1025)
T PRK12900 651 IATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF 706 (1025)
T ss_pred EeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE
Confidence 9999999999998 332 45899999999999999999999998865533
No 119
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.20 E-value=8.9e-11 Score=119.65 Aligned_cols=133 Identities=25% Similarity=0.350 Sum_probs=93.8
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..++|||.+++..+... .+++++..++|+|||..++.+++..+..+. .+++||++|+ .++.||..
T Consensus 7 ~~~~~~Q~~~~~~~~~~---------~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----~~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 7 EPLRPYQKEAIEALLSG---------LRDVILAAPTGSGKTLAALLPALEALKRGK-----GKRVLVLVPTRELAEQWAE 72 (201)
T ss_pred CCCCHHHHHHHHHHHcC---------CCcEEEECCCCCchhHHHHHHHHHHhcccC-----CCcEEEEeCCHHHHHHHHH
Confidence 45789999999988641 167899999999999988888877665541 4579999995 78899999
Q ss_pred HHHHHhCCC--eEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccc-cCCCCcEEEEcCccccCC
Q 043990 261 EIKKWVGGR--VQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFS-CSESCDLLICDEAHRLKN 333 (911)
Q Consensus 261 Ei~k~~~~~--~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~-~~~~~~lVIlDEAH~lKN 333 (911)
++.++++.. .....+.+.........+. ...++|+++||+.+........ ....+++||+||+|++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 143 (201)
T smart00487 73 ELKKLGPSLGLKVVGLYGGDSKREQLRKLE-----SGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD 143 (201)
T ss_pred HHHHHhccCCeEEEEEeCCcchHHHHHHHh-----cCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc
Confidence 999998642 3333334333222222111 1223899999998866554321 245788999999999976
No 120
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=1.6e-08 Score=122.67 Aligned_cols=123 Identities=12% Similarity=0.224 Sum_probs=98.9
Q ss_pred ccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEE
Q 043990 514 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFL 593 (911)
Q Consensus 514 ~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~L 593 (911)
+.....|..++.+-+..+.. .|+.|||-+.+...-+.|..+|...|+++..|+.... .+-..+|.+= |..+ .+.
T Consensus 547 y~t~~~k~~ai~~ei~~~~~-~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~A--G~~g--~VT 620 (970)
T PRK12899 547 YMTEREKYHAIVAEIASIHR-KGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGA--GKLG--AVT 620 (970)
T ss_pred ecCHHHHHHHHHHHHHHHHh-CCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhc--CCCC--cEE
Confidence 34456788888887777766 6899999999999999999999999999999988644 2333555543 2333 589
Q ss_pred EecCCcccccCCC--------CCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 594 LSSKAGGCGLNLI--------GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 594 lStkagg~GLNL~--------~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
|+|..+|+|-|+. |.=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 621 IATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 621 VATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred EeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 9999999998863 456899999999999999999999999998765554
No 121
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.16 E-value=1.8e-09 Score=129.03 Aligned_cols=133 Identities=16% Similarity=0.211 Sum_probs=84.4
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCC---CCCCCceEEEEeCc-hhh----
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFD---GKPMVKKAIIVTPT-SLV---- 255 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~---~~p~~~~~LIV~P~-sLl---- 255 (911)
|--.|-++..-+++ ...++|++.+||+|||..+...|+.++.++.. -....-+++-|+|. +|.
T Consensus 111 fN~iQS~vFp~aY~---------SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~ 181 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYK---------SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMV 181 (1230)
T ss_pred HHHHHHHhhhhhhc---------CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHH
Confidence 33446665555543 23578999999999999999888888775211 11124579999996 444
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHH----HhhccccccCCCCcEEEEcCcccc
Q 043990 256 SNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETF----RMHSSKFSCSESCDLLICDEAHRL 331 (911)
Q Consensus 256 ~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l----~~~~~~~~~~~~~~lVIlDEAH~l 331 (911)
.+|-..+.-| ++.|..+.|...-.... ....+|+|||+|.+ |.............|||+||.|.|
T Consensus 182 ~~~~kkl~~~---gi~v~ELTGD~ql~~te--------i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL 250 (1230)
T KOG0952|consen 182 DKFSKKLAPL---GISVRELTGDTQLTKTE--------IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL 250 (1230)
T ss_pred HHHhhhcccc---cceEEEecCcchhhHHH--------HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh
Confidence 5555444433 46777777665332211 13468999999987 222211111346789999999999
Q ss_pred CCccc
Q 043990 332 KNDQT 336 (911)
Q Consensus 332 KN~~s 336 (911)
.....
T Consensus 251 hd~RG 255 (1230)
T KOG0952|consen 251 HDDRG 255 (1230)
T ss_pred cCccc
Confidence 87643
No 122
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.15 E-value=3.8e-09 Score=112.93 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc-CC-CEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcc
Q 043990 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-RY-PYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGG 600 (911)
Q Consensus 523 ~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~-gi-~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg 600 (911)
.|...|+..+. ++..++||.....+++.+...|+.. +. ....++.... .|.+-|++|++|.. -+|++|....
T Consensus 293 kl~~~lekq~~-~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~~---~lLiTTTILE 366 (441)
T COG4098 293 KLKRWLEKQRK-TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGKI---TLLITTTILE 366 (441)
T ss_pred HHHHHHHHHHh-cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCce---EEEEEeehhh
Confidence 34555555554 6899999999999999999999543 22 2344555544 89999999999644 5999999999
Q ss_pred cccCCCCCCEEEEeCCC--CCcchHHHHHHhhhhcCCcc--cEEEEE
Q 043990 601 CGLNLIGGNRLVLFDPD--WNPANDKQAAARVWRDGQKK--RVFIYR 643 (911)
Q Consensus 601 ~GLNL~~An~VIl~Dp~--WNPa~~~QAigR~~RiGQkk--~V~Vyr 643 (911)
+|+..+..+..|+=.-. ++-+...|-.||++|---.- +|..|+
T Consensus 367 RGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 367 RGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred cccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 99999999988886544 88999999999999954433 344443
No 123
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.13 E-value=6e-10 Score=121.41 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=96.7
Q ss_pred eEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCC
Q 043990 538 RIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD 617 (911)
Q Consensus 538 KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~ 617 (911)
--||||..+...+.++..|..+|++...++.+....+|..+-+.+-+++.. +++.|-.-|.|+|=+....||+++++
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~ 333 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPS 333 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC---EEEEEeccccccCCcceeEEEecCch
Confidence 469999999999999999999999999999999999999999999886655 78888999999999999999999999
Q ss_pred CCcchHHHHHHhhhhcCCcccEEEEE
Q 043990 618 WNPANDKQAAARVWRDGQKKRVFIYR 643 (911)
Q Consensus 618 WNPa~~~QAigR~~RiGQkk~V~Vyr 643 (911)
-|-+-|.|--||++|.|-..-|..|+
T Consensus 334 qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hhhHHHHHhccccccCCCccceeeee
Confidence 99999999999999999999998885
No 124
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.12 E-value=1.9e-09 Score=117.84 Aligned_cols=219 Identities=19% Similarity=0.228 Sum_probs=127.0
Q ss_pred EEEEEecCCHHHHHHHHHHHHh--HHHHHHhhhhhh------------HhhHHHHHHHHHHHhcChhhhHhhhhcCCCCC
Q 043990 420 IEVVCCKLTPLQSELYNHFIHS--KNVKRAISEETK------------QSKILAYITALKKLCNHPKLIYDTIKSGNPGT 485 (911)
Q Consensus 420 ~~vv~~~ls~~Q~~lY~~~l~~--~~~~~~~~~~~~------------~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~ 485 (911)
++.+.++|+..|+++|+.++.. ..+......... ...+-.++..++.+|+||.|+.+.........
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll~ 84 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLLL 84 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-S
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCcccccc
Confidence 5678899999999999998653 223322221111 13455678889999999999876654322111
Q ss_pred CCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHh----hcCCCeEEEEEcchHHHHHHHHHHHHcCC
Q 043990 486 TGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLR----QRTDDRIVLVSNYTQTLDLFAQLCRERRY 561 (911)
Q Consensus 486 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~----~~~~~KVIIFSq~~~~ld~L~~~L~~~gi 561 (911)
.... ......|+|+.+|.+|+..+. ...+-++||+++..+++++|+.+|...++
T Consensus 85 ~e~~----------------------~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~ 142 (297)
T PF11496_consen 85 SEPA----------------------EWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKL 142 (297)
T ss_dssp TTHH----------------------HHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSS
T ss_pred chHH----------------------HHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCe
Confidence 1111 122456999999999999982 22567999999999999999999999999
Q ss_pred CEEEEeCCCCHHHHHHHH------------Hhhc-CCCCCceEEEEecCCccc----ccCCCCCCEEEEeCCCCCcchHH
Q 043990 562 PYLRLDGTTSISKRQKLV------------NHFN-DPSKNEFVFLLSSKAGGC----GLNLIGGNRLVLFDPDWNPANDK 624 (911)
Q Consensus 562 ~~~~LdGsts~~~R~~iv------------~~Fn-~~~~~~~v~LlStkagg~----GLNL~~An~VIl~Dp~WNPa~~~ 624 (911)
.|.|++|..-..+..+.- .... .+.....++|+++.-... .++-...+.||-||+.+++....
T Consensus 143 ~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~ 222 (297)
T PF11496_consen 143 NYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPS 222 (297)
T ss_dssp EEEESSS--S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHH
T ss_pred eEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChH
Confidence 999999976654444333 1111 122345667777765433 24445778999999999998876
Q ss_pred HHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 043990 625 QAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSK 661 (911)
Q Consensus 625 QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K 661 (911)
-..-|.+...+ +.|-|+||+..+|+|--++.....+
T Consensus 223 i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 223 IEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPKSS 258 (297)
T ss_dssp HHHHH--------S--EEEEEETTSHHHHHHHHTTTS
T ss_pred HHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccCcc
Confidence 55555544333 8999999999999999887766543
No 125
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.12 E-value=2.1e-08 Score=112.93 Aligned_cols=139 Identities=14% Similarity=0.187 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 519 GKMHVLARLLGHLRQ--RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 519 ~Kl~~L~~LL~~l~~--~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
++...+++|+.+++. ..++|++|-+=.++|++-|..+|...|+++..+|.....-+|..++...+.|.-+ +|+..
T Consensus 427 p~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGI 503 (663)
T COG0556 427 PTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGI 503 (663)
T ss_pred cCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEee
Confidence 333456666666554 3579999999999999999999999999999999999999999999999986544 89999
Q ss_pred CCcccccCCCCCCEEEEeCCC-----CCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 043990 597 KAGGCGLNLIGGNRLVLFDPD-----WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSK 661 (911)
Q Consensus 597 kagg~GLNL~~An~VIl~Dp~-----WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K 661 (911)
..+-+||||+.++-|.++|.+ -+-...+|-|||+.|-- .-.|..|-=..++++++.|-+...+.
T Consensus 504 NLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~-~GkvIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 504 NLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred hhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhcc-CCeEEEEchhhhHHHHHHHHHHHHHH
Confidence 999999999999999999987 47789999999999932 23466665566777777776554443
No 126
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.11 E-value=3.5e-09 Score=130.36 Aligned_cols=127 Identities=15% Similarity=0.200 Sum_probs=100.8
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCC-CCCceEEEEecCCcccccCCCCCCEEEE
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDP-SKNEFVFLLSSKAGGCGLNLIGGNRLVL 613 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~-~~~~~v~LlStkagg~GLNL~~An~VIl 613 (911)
.+.||+|.+|.+..+..+...|+..+.+++.||+.+...+|.+.++...+- ..+...++++|.+...|+|+. .+.+|
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI- 516 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI- 516 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee-
Confidence 589999999999999999999999988899999999999999988854421 112225899999999999997 55554
Q ss_pred eCCCCCcchHHHHHHhhhhcC--CcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 043990 614 FDPDWNPANDKQAAARVWRDG--QKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664 (911)
Q Consensus 614 ~Dp~WNPa~~~QAigR~~RiG--Qkk~V~VyrLi~~gTIEEkI~~rq~~K~~L 664 (911)
-|+. -....+||.||++|-| ....++||...-.+....+.+.....+..-
T Consensus 517 Te~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 568 (733)
T COG1203 517 TELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKS 568 (733)
T ss_pred ecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcc
Confidence 3331 2356899999999999 667888888888888887777776665543
No 127
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.10 E-value=2.3e-08 Score=125.57 Aligned_cols=111 Identities=22% Similarity=0.304 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCC
Q 043990 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE----RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKA 598 (911)
Q Consensus 523 ~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~----~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStka 598 (911)
.+.+.|..+....+.++|||+....+++.+...|.. .+++ .+..... ..|.+++++|+.+.. .+|+++..
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~---~iLlgt~s 734 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEK---AILLGTSS 734 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCC---eEEEEcce
Confidence 444445444443567899999999999999998875 2443 3333333 478999999997543 37888999
Q ss_pred cccccCCCCCC--EEEEeCCCC-Cc-----------------------------chHHHHHHhhhhcCCcccE
Q 043990 599 GGCGLNLIGGN--RLVLFDPDW-NP-----------------------------ANDKQAAARVWRDGQKKRV 639 (911)
Q Consensus 599 gg~GLNL~~An--~VIl~Dp~W-NP-----------------------------a~~~QAigR~~RiGQkk~V 639 (911)
..+|+|+++.. .||+.-.|+ +| ....|++||+-|-.+.+-+
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~ 807 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGS 807 (850)
T ss_pred eecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEE
Confidence 99999999765 556665444 22 2345888888887666554
No 128
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.09 E-value=4.8e-10 Score=107.40 Aligned_cols=117 Identities=22% Similarity=0.247 Sum_probs=78.4
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHHHHHHHHhCCCeEEEEecCCcchhhhccCc
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWEAEIKKWVGGRVQLIALCESTRDDVVSGID 288 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~ 288 (911)
++++..++|+|||.+++.++..+...+ ..++++|+||...+ .+|...+.++......+..+.+........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-----~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 73 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-----KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE--- 73 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-----cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---
Confidence 679999999999999999999887653 24689999999655 666778888875222233333222211110
Q ss_pred ccCCCCCCccEEEEehHHHHhhcccc-ccCCCCcEEEEcCccccCCccc
Q 043990 289 SFTDPCSSLQVLIVSYETFRMHSSKF-SCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 289 ~~~~~~~~~~VvI~Sye~l~~~~~~~-~~~~~~~lVIlDEAH~lKN~~s 336 (911)
.......+|+|+||+.+....... .....+++||+||+|.+.+...
T Consensus 74 --~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~ 120 (144)
T cd00046 74 --KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF 120 (144)
T ss_pred --HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcch
Confidence 001235679999999886544321 1235799999999999977643
No 129
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.02 E-value=2.3e-09 Score=111.39 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=88.3
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.+++||++++..+.. .++++++.++|.|||+..+..+...+..... ....++|||||+ .|+.||...
T Consensus 21 ~~~~~Q~~~~~~~~~----------~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--~~~~~viii~p~~~L~~q~~~~ 88 (203)
T cd00268 21 KPTPIQARAIPPLLS----------GRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--KDGPQALILAPTRELALQIAEV 88 (203)
T ss_pred CCCHHHHHHHHHHhc----------CCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--cCCceEEEEcCCHHHHHHHHHH
Confidence 477999999988853 3578999999999999855544443333210 113479999998 688999999
Q ss_pred HHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCC
Q 043990 262 IKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN 333 (911)
+.++... ...+..+.++....... ..+ ....+|+|+|.+.+...... ......++++|+||+|.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 89 ARKLGKHTNLKVVVIYGGTSIDKQI--RKL---KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred HHHHhccCCceEEEEECCCCHHHHH--HHh---cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 9998753 35555555443321111 111 13568999999877443221 11235688999999999853
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=4.8e-08 Score=115.81 Aligned_cols=124 Identities=13% Similarity=0.240 Sum_probs=100.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 513 AWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 513 ~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
.+.....|..++.+-+..+.+ .|+.|||.+.+....+.|..+|.+.|+++..|..... .+-..+|.+=- ..+ .+
T Consensus 405 iy~t~~~k~~Aii~ei~~~~~-~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG--~~g--aV 478 (764)
T PRK12326 405 VYATAAEKNDAIVEHIAEVHE-TGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAG--KYG--AV 478 (764)
T ss_pred eEeCHHHHHHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcC--CCC--cE
Confidence 344556788888887777765 6999999999999999999999999999999988744 33455665532 233 58
Q ss_pred EEecCCcccccCCC---------------CCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 593 LLSSKAGGCGLNLI---------------GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 593 LlStkagg~GLNL~---------------~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
-|+|..+|+|-|+. |.=+||....+-|-..+.|..||++|.|..-....|
T Consensus 479 TIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 479 TVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred EEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999999998865 456899999999999999999999999998765554
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=8.4e-08 Score=116.35 Aligned_cols=124 Identities=12% Similarity=0.204 Sum_probs=100.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 513 AWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 513 ~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
.+.....|..++.+-+..+.. .|+.|||-+.+....+.|..+|...|+++-.|..... .+-..+|.+ .|..+ .+
T Consensus 427 vy~t~~eK~~Ai~~ei~~~~~-~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~--AG~~G--aV 500 (913)
T PRK13103 427 VYLTAEEKYAAIITDIKECMA-LGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ--AGRPG--AL 500 (913)
T ss_pred EEcCHHHHHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc--CCCCC--cE
Confidence 445567898888888888776 6999999999999999999999999999988877644 333455553 33334 58
Q ss_pred EEecCCcccccCCC-------------------------------------CCCEEEEeCCCCCcchHHHHHHhhhhcCC
Q 043990 593 LLSSKAGGCGLNLI-------------------------------------GGNRLVLFDPDWNPANDKQAAARVWRDGQ 635 (911)
Q Consensus 593 LlStkagg~GLNL~-------------------------------------~An~VIl~Dp~WNPa~~~QAigR~~RiGQ 635 (911)
-|+|..+|+|-|+. |.=+||.-..+-|-..+.|..||++|.|.
T Consensus 501 TIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGD 580 (913)
T PRK13103 501 TIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGD 580 (913)
T ss_pred EEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCC
Confidence 99999999998874 45689999999999999999999999999
Q ss_pred cccEEEE
Q 043990 636 KKRVFIY 642 (911)
Q Consensus 636 kk~V~Vy 642 (911)
.-....|
T Consensus 581 PGsS~f~ 587 (913)
T PRK13103 581 PGSSRFY 587 (913)
T ss_pred CCceEEE
Confidence 8665554
No 132
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.92 E-value=4.4e-08 Score=118.77 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=77.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCC----CCCceEEEEeCc-hhhHHHHHHHHHHhCC-CeEEEEecCCcch
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGK----PMVKKAIIVTPT-SLVSNWEAEIKKWVGG-RVQLIALCESTRD 281 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~----p~~~~~LIV~P~-sLl~qW~~Ei~k~~~~-~~~v~~~~~~~r~ 281 (911)
....+|+.++|.|||-.|+.-|+.-+..+.... -..-++.-|+|. .|+..|...|.+|+.. ++.|.-..+....
T Consensus 325 ~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l 404 (1674)
T KOG0951|consen 325 DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL 404 (1674)
T ss_pred cCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc
Confidence 456789999999999998887776665553210 112367888895 8999999999999765 6777776665432
Q ss_pred hhhccCcccCCCCCCccEEEEehHHHH---hhccccccCCCCcEEEEcCcccc
Q 043990 282 DVVSGIDSFTDPCSSLQVLIVSYETFR---MHSSKFSCSESCDLLICDEAHRL 331 (911)
Q Consensus 282 ~~~~~~~~~~~~~~~~~VvI~Sye~l~---~~~~~~~~~~~~~lVIlDEAH~l 331 (911)
... + ...-+|+++|+|..- +......-..-++++|+||.|.+
T Consensus 405 ~~~----q----ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 405 GKE----Q----IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred hhh----h----hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 111 1 122469999988761 11111111234688999999998
No 133
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.92 E-value=3.2e-09 Score=115.77 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=92.1
Q ss_pred HHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccC
Q 043990 528 LGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERR---YPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLN 604 (911)
Q Consensus 528 L~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~g---i~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLN 604 (911)
+..++...-+|.||||..++-.|-|+++++++| |.++.++|...+.+|.+.++.|...+. .|||+|+++++||+
T Consensus 497 v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dv---kflictdvaargld 573 (725)
T KOG0349|consen 497 VVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDV---KFLICTDVAARGLD 573 (725)
T ss_pred hhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCe---EEEEEehhhhcccc
Confidence 344444567899999999999999999999874 678999999999999999999998544 49999999999999
Q ss_pred CCCCCEEEEeCCCCCcchHHHHHHhhhhc
Q 043990 605 LIGGNRLVLFDPDWNPANDKQAAARVWRD 633 (911)
Q Consensus 605 L~~An~VIl~Dp~WNPa~~~QAigR~~Ri 633 (911)
+++...+|+...|-...+|.+||||++|.
T Consensus 574 i~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 574 ITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred ccCCceEEEEecCcccchhhhhhhccchh
Confidence 99999999999999999999999999885
No 134
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.90 E-value=8.5e-09 Score=103.50 Aligned_cols=127 Identities=21% Similarity=0.298 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEIKK 264 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei~k 264 (911)
|+|.+++.-+.. .+..|+..++|+|||..++..+...+..+ ....+||++|. .++.|-..++.+
T Consensus 2 ~~Q~~~~~~i~~----------~~~~li~aptGsGKT~~~~~~~l~~~~~~-----~~~~~lii~P~~~l~~q~~~~~~~ 66 (169)
T PF00270_consen 2 PLQQEAIEAIIS----------GKNVLISAPTGSGKTLAYILPALNRLQEG-----KDARVLIIVPTRALAEQQFERLRK 66 (169)
T ss_dssp HHHHHHHHHHHT----------TSEEEEECSTTSSHHHHHHHHHHHHHHTT-----SSSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----------CCCEEEECCCCCccHHHHHHHHHhhhccC-----CCceEEEEeecccccccccccccc
Confidence 899999988752 24579999999999999998777766554 12389999997 688889999999
Q ss_pred HhCC-CeEEEEecCCcchh--hhccCcccCCCCCCccEEEEehHHHHhhcccc-ccCCCCcEEEEcCccccCC
Q 043990 265 WVGG-RVQLIALCESTRDD--VVSGIDSFTDPCSSLQVLIVSYETFRMHSSKF-SCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 265 ~~~~-~~~v~~~~~~~r~~--~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~-~~~~~~~lVIlDEAH~lKN 333 (911)
++.. .+.+..++++.... ....+ ....+|+|+|++.|....... ......++||+||+|.+-.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 67 FFSNTNVRVVLLHGGQSISEDQREVL------SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp HTTTTTSSEEEESTTSCHHHHHHHHH------HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHH
T ss_pred cccccccccccccccccccccccccc------cccccccccCcchhhccccccccccccceeeccCccccccc
Confidence 9875 45555555544321 11111 134689999999996554421 0223489999999999843
No 135
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.88 E-value=1.4e-08 Score=109.37 Aligned_cols=142 Identities=20% Similarity=0.258 Sum_probs=96.4
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEA 260 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~ 260 (911)
...|-.-|.|+|.+..+.....+......|.+|+|.+|.||-.|+.++|+..+.+|. .+++-|-+...|...-++
T Consensus 35 ~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-----~r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 35 SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-----KRAVWVSVSNDLKYDAER 109 (303)
T ss_pred cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-----CceEEEECChhhhhHHHH
Confidence 446889999999999887776666666789999999999999999999999888872 234444455577766666
Q ss_pred HHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc-------ccccC-----CCC-cEEEEcC
Q 043990 261 EIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-------KFSCS-----ESC-DLLICDE 327 (911)
Q Consensus 261 Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-------~~~~~-----~~~-~lVIlDE 327 (911)
.+.-.-...+.+..+..-...+. ...+..|+.+||.+|+.... ++... ..| .+||+||
T Consensus 110 Dl~DIG~~~i~v~~l~~~~~~~~---------~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDE 180 (303)
T PF13872_consen 110 DLRDIGADNIPVHPLNKFKYGDI---------IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDE 180 (303)
T ss_pred HHHHhCCCcccceechhhccCcC---------CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEecc
Confidence 66654433344433332111111 01234699999999965531 11111 122 4899999
Q ss_pred ccccCCccc
Q 043990 328 AHRLKNDQT 336 (911)
Q Consensus 328 AH~lKN~~s 336 (911)
||+.||..+
T Consensus 181 cH~akn~~~ 189 (303)
T PF13872_consen 181 CHKAKNLSS 189 (303)
T ss_pred chhcCCCCc
Confidence 999999865
No 136
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.88 E-value=4.5e-08 Score=100.66 Aligned_cols=274 Identities=17% Similarity=0.156 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch-hhHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS-LVSNWEAEIKK 264 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s-Ll~qW~~Ei~k 264 (911)
.-|.+++...+- | --++-..-.|+|||.... +.++..-. ..+..-.+||+|-+. |..|-.+|..+
T Consensus 67 evqhecipqail---g-------mdvlcqaksgmgktavfv--l~tlqqie--pv~g~vsvlvmchtrelafqi~~ey~r 132 (387)
T KOG0329|consen 67 EVQHECIPQAIL---G-------MDVLCQAKSGMGKTAVFV--LATLQQIE--PVDGQVSVLVMCHTRELAFQISKEYER 132 (387)
T ss_pred HhhhhhhhHHhh---c-------chhheecccCCCceeeee--hhhhhhcC--CCCCeEEEEEEeccHHHHHHHHHHHHH
Confidence 558888776532 1 122344567999997533 23332222 122344789999984 55777777665
Q ss_pred H---hCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccchhcc
Q 043990 265 W---VGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTLTNR 340 (911)
Q Consensus 265 ~---~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~~~~ 340 (911)
| .|. +++.++.|+..-+.... .+. .-++|++.|++.+..... +..........|+|||..+
T Consensus 133 fskymP~-vkvaVFfGG~~Ikkdee--~lk---~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm--------- 197 (387)
T KOG0329|consen 133 FSKYMPS-VKVSVFFGGLFIKKDEE--LLK---NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM--------- 197 (387)
T ss_pred HHhhCCC-ceEEEEEcceeccccHH--HHh---CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH---------
Confidence 5 554 66666665543221111 111 246899999998754332 2222456677899999987
Q ss_pred CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccC-CCcE
Q 043990 341 NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHL-PPKI 419 (911)
Q Consensus 341 N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~L-P~k~ 419 (911)
++ ..=+||...++..-- +.|.
T Consensus 198 --le--------------------------------------------------------~lDMrRDvQEifr~tp~~KQ 219 (387)
T KOG0329|consen 198 --LE--------------------------------------------------------QLDMRRDVQEIFRMTPHEKQ 219 (387)
T ss_pred --HH--------------------------------------------------------HHHHHHHHHHHhhcCcccce
Confidence 11 112334333333333 3466
Q ss_pred EEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhh-hHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcc
Q 043990 420 IEVVCCKLTPLQSELYNHFIHSKNVKRAISEET-KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498 (911)
Q Consensus 420 ~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~-~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e 498 (911)
.......++..-|-..+.|++.....-...+.. .-..+.+...+|
T Consensus 220 vmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkL---------------------------------- 265 (387)
T KOG0329|consen 220 VMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKL---------------------------------- 265 (387)
T ss_pred eeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhh----------------------------------
Confidence 666677788877777777766543222111100 001111111111
Q ss_pred cccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Q 043990 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578 (911)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~i 578 (911)
+...|-..|..||..+.- ..||||...++-+.
T Consensus 266 -----------------ke~eKNrkl~dLLd~LeF---NQVvIFvKsv~Rl~---------------------------- 297 (387)
T KOG0329|consen 266 -----------------KENEKNRKLNDLLDVLEF---NQVVIFVKSVQRLS---------------------------- 297 (387)
T ss_pred -----------------hhhhhhhhhhhhhhhhhh---cceeEeeehhhhhh----------------------------
Confidence 124455667777776643 58999987765311
Q ss_pred HHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCccc
Q 043990 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR 638 (911)
Q Consensus 579 v~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~ 638 (911)
|+. . |++|.+-|+|+++-..|.+|+||.|-.+..|.+++||++|.|-+--
T Consensus 298 ---f~k------r-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkgl 347 (387)
T KOG0329|consen 298 ---FQK------R-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 347 (387)
T ss_pred ---hhh------h-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccc
Confidence 321 2 7788999999999999999999999999999999999999997653
No 137
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.81 E-value=6.3e-08 Score=104.14 Aligned_cols=108 Identities=11% Similarity=0.056 Sum_probs=95.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEe
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLF 614 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~ 614 (911)
.|..-||||-...-.+.+...|+.+|+....++..+-+.+|..+-..+-.+ ...+++.|-|-|.||+-+....||+-
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~---eiqvivatvafgmgidkpdvrfvihh 392 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG---EIQVIVATVAFGMGIDKPDVRFVIHH 392 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc---ceEEEEEEeeecccCCCCCeeEEEec
Confidence 467889999999999999999999999999999999988888887777663 44588899999999999999999999
Q ss_pred CCCCCcchHHH-------------------------------------------HHHhhhhcCCcccEEEEEEE
Q 043990 615 DPDWNPANDKQ-------------------------------------------AAARVWRDGQKKRVFIYRFL 645 (911)
Q Consensus 615 Dp~WNPa~~~Q-------------------------------------------AigR~~RiGQkk~V~VyrLi 645 (911)
..+-+-.+|.| --||++|.||+-+|..|+=+
T Consensus 393 sl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 393 SLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEech
Confidence 99999999999 45889999999999877644
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.78 E-value=1.5e-06 Score=104.69 Aligned_cols=124 Identities=13% Similarity=0.192 Sum_probs=100.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 513 AWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 513 ~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
.+.....|+.++.+-+..+.. .|+.|||.+.+....+.|..+|...|+++..|+.... +.=..+|. +.|..+ .+
T Consensus 404 iy~t~~~K~~Aii~ei~~~~~-~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~AG~~G--aV 477 (925)
T PRK12903 404 IFGTKHAKWKAVVKEVKRVHK-KGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KAGQKG--AI 477 (925)
T ss_pred EEEcHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hCCCCC--eE
Confidence 344557888888887777765 6999999999999999999999999999999988644 22334554 334334 58
Q ss_pred EEecCCcccccCCCC--------CCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 593 LLSSKAGGCGLNLIG--------GNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 593 LlStkagg~GLNL~~--------An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
.|+|..+|+|-|+.- .=+||..+.+-|-..+.|..||++|.|..-....|
T Consensus 478 TIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 478 TIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred EEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999999999763 33999999999999999999999999988765554
No 139
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.73 E-value=3.8e-06 Score=101.38 Aligned_cols=142 Identities=17% Similarity=0.345 Sum_probs=94.1
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++..|+--.+.++ .| ...-+..+||+|||--.+...+.+..+| ++++||.|+ .|+.|-.+.
T Consensus 82 ~~ws~QR~WakR~~---rg-------~SFaiiAPTGvGKTTfg~~~sl~~a~kg-------kr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 82 RPWSAQRVWAKRLV---RG-------KSFAIIAPTGVGKTTFGLLMSLYLAKKG-------KRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred CchHHHHHHHHHHH---cC-------CceEEEcCCCCchhHHHHHHHHHHHhcC-------CeEEEEecCHHHHHHHHHH
Confidence 56688996444443 22 2233455999999987777666665554 689999998 567999999
Q ss_pred HHHHhCC--CeEEEE-ecCC----cchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCc
Q 043990 262 IKKWVGG--RVQLIA-LCES----TRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 262 i~k~~~~--~~~v~~-~~~~----~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~ 334 (911)
|.++... ...+.. +++. .++.....+. .+.++|+|+|-..+..+...+. ..+||+|++|.+..+--.
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~-----~gdfdIlitTs~FL~k~~e~L~-~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIE-----SGDFDILITTSQFLSKRFEELS-KLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHh-----cCCccEEEEeHHHHHhhHHHhc-ccCCCEEEEccHHHHHhc
Confidence 9999742 122222 5554 2233333332 2678999999999988877776 478999999999975221
Q ss_pred cchhccCCHHHHHHhhhh
Q 043990 335 QTLTNRNDLEEFFAMVNF 352 (911)
Q Consensus 335 ~s~~~~N~l~El~sLl~f 352 (911)
. .++.-+..|+.|
T Consensus 219 s-----kNvDriL~LlGf 231 (1187)
T COG1110 219 S-----KNVDRLLRLLGF 231 (1187)
T ss_pred c-----ccHHHHHHHcCC
Confidence 1 125556665554
No 140
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.66 E-value=2.2e-06 Score=102.14 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHH-HHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSN-WEAEI 262 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~q-W~~Ei 262 (911)
|-++|++||--|.+ +..+.+|..|-.|||++|=..|...... ..+++--.|--.+.| =-++|
T Consensus 298 lD~FQk~Ai~~ler----------g~SVFVAAHTSAGKTvVAEYAialaq~h-------~TR~iYTSPIKALSNQKfRDF 360 (1248)
T KOG0947|consen 298 LDTFQKEAIYHLER----------GDSVFVAAHTSAGKTVVAEYAIALAQKH-------MTRTIYTSPIKALSNQKFRDF 360 (1248)
T ss_pred ccHHHHHHHHHHHc----------CCeEEEEecCCCCcchHHHHHHHHHHhh-------ccceEecchhhhhccchHHHH
Confidence 34899999977642 4567899999999999976665443332 357888888655544 45677
Q ss_pred HHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCc
Q 043990 263 KKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 263 ~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~ 334 (911)
+.-++. +.+++.+-.- .....++|+|-+.+|...-+ ..-......||+||.|.+.+.
T Consensus 361 k~tF~D-vgLlTGDvqi--------------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~ 418 (1248)
T KOG0947|consen 361 KETFGD-VGLLTGDVQI--------------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDV 418 (1248)
T ss_pred HHhccc-cceeecceee--------------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccc
Confidence 766654 2222221111 12346999999999754321 111345778999999999653
No 141
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.65 E-value=5.9e-07 Score=104.53 Aligned_cols=148 Identities=19% Similarity=0.282 Sum_probs=94.5
Q ss_pred cChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe-Cchh
Q 043990 176 VDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT-PTSL 254 (911)
Q Consensus 176 v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~-P~sL 254 (911)
+|..-...|-.-|.|+|.|+...-..++-.....|.+|+|.-|.||-.+...+|.....+| .+++|.+. .+-|
T Consensus 257 lP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG------RKrAlW~SVSsDL 330 (1300)
T KOG1513|consen 257 LPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG------RKRALWFSVSSDL 330 (1300)
T ss_pred cccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc------cceeEEEEecccc
Confidence 4444456788999999999988665555444567889999999999877777777665565 34555554 4556
Q ss_pred hHHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhc--------cccccCCCC------
Q 043990 255 VSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHS--------SKFSCSESC------ 320 (911)
Q Consensus 255 l~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~--------~~~~~~~~~------ 320 (911)
...-++.+...-...+.|..+..-.-..+. .-.+...+-.|+++||..|.-.. .+|.....|
T Consensus 331 KfDAERDL~DigA~~I~V~alnK~KYakIs----s~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe 406 (1300)
T KOG1513|consen 331 KFDAERDLRDIGATGIAVHALNKFKYAKIS----SKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE 406 (1300)
T ss_pred ccchhhchhhcCCCCccceehhhccccccc----ccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc
Confidence 666777777664445555555432222221 11122334579999998873221 122211222
Q ss_pred cEEEEcCccccCC
Q 043990 321 DLLICDEAHRLKN 333 (911)
Q Consensus 321 ~lVIlDEAH~lKN 333 (911)
++||+||||+.||
T Consensus 407 GvIvfDECHkAKN 419 (1300)
T KOG1513|consen 407 GVIVFDECHKAKN 419 (1300)
T ss_pred eeEEehhhhhhcc
Confidence 5899999999999
No 142
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.63 E-value=1.2e-06 Score=107.72 Aligned_cols=147 Identities=16% Similarity=0.253 Sum_probs=94.4
Q ss_pred ccchHHHHHHHHHHHHhhc--------CCCeEEEEEcchHHHHHHHHHHHHcCC-----CEE--------EEeCCCCH--
Q 043990 516 ELSGKMHVLARLLGHLRQR--------TDDRIVLVSNYTQTLDLFAQLCRERRY-----PYL--------RLDGTTSI-- 572 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~--------~~~KVIIFSq~~~~ld~L~~~L~~~gi-----~~~--------~LdGsts~-- 572 (911)
+..+|+.+|.++|.++... ++.+|||||++..|+..|.++|...++ +++ ...|..+.
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~~~~~~~~~~fm~~~l~~y~~~~~~~~k~~ 346 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTTSNKKRGSRAFLLNKLRWYRKWREETSKLA 346 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4699999999999887643 346899999999999999998865222 111 00011110
Q ss_pred ---------------------------H--HH-----HHHHHhhcCCCCC--ce----EEE-------------------
Q 043990 573 ---------------------------S--KR-----QKLVNHFNDPSKN--EF----VFL------------------- 593 (911)
Q Consensus 573 ---------------------------~--~R-----~~iv~~Fn~~~~~--~~----v~L------------------- 593 (911)
. .| ++.+.+|+.+..+ .. .++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~krrr~rG~s~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (814)
T TIGR00596 347 KEVQSQDTFPENASSNVNKTFRKEQVPTKRRRVRGGSEVAVEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINAAN 426 (814)
T ss_pred HhhhhccccccccccccccccccccccccccccccchhHHHhhhcccccccccccchhhhhhhhhhhhcccccccccccc
Confidence 0 00 1236667543221 00 011
Q ss_pred ----EecCCcccccCCCC----------------------C----------CEEEEeCCCCCcchHHHHHHhhhhcCCcc
Q 043990 594 ----LSSKAGGCGLNLIG----------------------G----------NRLVLFDPDWNPANDKQAAARVWRDGQKK 637 (911)
Q Consensus 594 ----lStkagg~GLNL~~----------------------A----------n~VIl~Dp~WNPa~~~QAigR~~RiGQkk 637 (911)
+++..+.+|+|... + ++||||||.-...+.+|. -|++|.|.
T Consensus 427 ~~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEv-yra~r~~r-- 503 (814)
T TIGR00596 427 DSKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEV-YKASRPLR-- 503 (814)
T ss_pred ccccccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHH-HHccCCCC--
Confidence 44566778888876 4 899999998666666661 13333332
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 043990 638 RVFIYRFLSTGTIEEKVYQRQMSKEGLQ 665 (911)
Q Consensus 638 ~V~VyrLi~~gTIEEkI~~rq~~K~~L~ 665 (911)
++.||-|+..||+||.-|-...+|+.-+
T Consensus 504 ~~rVyfL~y~~S~EEq~yl~sirrEK~A 531 (814)
T TIGR00596 504 PLRVYFLYYGGSIEEQRYLTSLRREKDA 531 (814)
T ss_pred CcEEEEEEECCcHHHHHHHHHHHHHHHH
Confidence 4889999999999999887776666543
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.51 E-value=2.1e-05 Score=95.62 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=67.3
Q ss_pred cccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCC-CHHHHHHHHHhhcCCCCCceEEE
Q 043990 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTT-SISKRQKLVNHFNDPSKNEFVFL 593 (911)
Q Consensus 515 ~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGst-s~~~R~~iv~~Fn~~~~~~~v~L 593 (911)
.....|..++.+-+..... .|..|||-+.+....+.|..+|...|+++..|.... ..++=..+|.+= |..+ .+-
T Consensus 404 ~t~~~K~~AI~~ei~~~~~-~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G~~G--~VT 478 (870)
T CHL00122 404 KDELSKWRAIADECLQMHQ-TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--GRKG--SIT 478 (870)
T ss_pred eCHHHHHHHHHHHHHHHHh-cCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--CCCC--cEE
Confidence 3445688877776666655 699999999999999999999999999999999874 334445667663 3334 589
Q ss_pred EecCCcccccCC
Q 043990 594 LSSKAGGCGLNL 605 (911)
Q Consensus 594 lStkagg~GLNL 605 (911)
|+|..+|+|-|+
T Consensus 479 IATNMAGRGTDI 490 (870)
T CHL00122 479 IATNMAGRGTDI 490 (870)
T ss_pred EeccccCCCcCe
Confidence 999999999775
No 144
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.51 E-value=1.6e-06 Score=101.00 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=77.5
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
+|-|+|..+|.-+ .+...+++..-|-.|||++|=..|+.-++. ..|++--.|- .|-.|=.+|
T Consensus 129 ~LDpFQ~~aI~Ci----------dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-------kQRVIYTSPIKALSNQKYRE 191 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI----------DRGESVLVSAHTSAGKTVVAEYAIAMSLRE-------KQRVIYTSPIKALSNQKYRE 191 (1041)
T ss_pred ccCchHhhhhhhh----------cCCceEEEEeecCCCcchHHHHHHHHHHHh-------cCeEEeeChhhhhcchhHHH
Confidence 5669999998755 234567888999999999987666655544 2478888886 444566777
Q ss_pred HHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc---ccccCCCCcEEEEcCccccCCcc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS---KFSCSESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~---~~~~~~~~~lVIlDEAH~lKN~~ 335 (911)
+..-++. +-..+ |.-. + + .....+|+|-+.+|...- ... .....||+||.|.++...
T Consensus 192 l~~EF~D-VGLMT--GDVT------I----n--P~ASCLVMTTEILRsMLYRGSEvm--rEVaWVIFDEIHYMRDkE 251 (1041)
T KOG0948|consen 192 LLEEFKD-VGLMT--GDVT------I----N--PDASCLVMTTEILRSMLYRGSEVM--REVAWVIFDEIHYMRDKE 251 (1041)
T ss_pred HHHHhcc-cceee--ccee------e----C--CCCceeeeHHHHHHHHHhccchHh--heeeeEEeeeehhccccc
Confidence 7765543 22211 1100 0 0 234589999999975432 222 234559999999998754
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.50 E-value=1.8e-06 Score=97.96 Aligned_cols=111 Identities=27% Similarity=0.283 Sum_probs=85.1
Q ss_pred HHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHHHcCCC-EEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcc
Q 043990 523 VLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYP-YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGG 600 (911)
Q Consensus 523 ~L~~LL~~l~~-~~~~KVIIFSq~~~~ld~L~~~L~~~gi~-~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg 600 (911)
+...++..+.. .+|+-||-||... +-.+...+.++|.. ++++.|+.|++.|.+--..||+++.. +-+|++++|.|
T Consensus 344 v~~~~~~sl~nlk~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e-~dvlVAsDAIG 420 (700)
T KOG0953|consen 344 VEETALGSLSNLKPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNE-CDVLVASDAIG 420 (700)
T ss_pred ehhhhhhhhccCCCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCc-cceEEeecccc
Confidence 33334444332 3688999888653 44555666777766 99999999999999999999996654 46899999999
Q ss_pred cccCCCCCCEEEEeCCC---------CCcchHHHHHHhhhhcCCcc
Q 043990 601 CGLNLIGGNRLVLFDPD---------WNPANDKQAAARVWRDGQKK 637 (911)
Q Consensus 601 ~GLNL~~An~VIl~Dp~---------WNPa~~~QAigR~~RiGQkk 637 (911)
.|||| +..|||||+.- -.-....|-.|||+|.|.+-
T Consensus 421 MGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 421 MGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred ccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 99999 57899999864 23456779999999998774
No 146
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.49 E-value=1.2e-05 Score=96.14 Aligned_cols=129 Identities=21% Similarity=0.212 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEIKK 264 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei~k 264 (911)
.+|++-+.-. +....+++..++-.|||..+-..|-..++.. ..+-++-|+|+ .|+.|-..++..
T Consensus 514 ~WQ~elLDsv----------Dr~eSavIVAPTSaGKTfisfY~iEKVLRes-----D~~VVIyvaPtKaLVnQvsa~Vya 578 (1330)
T KOG0949|consen 514 EWQRELLDSV----------DRNESAVIVAPTSAGKTFISFYAIEKVLRES-----DSDVVIYVAPTKALVNQVSANVYA 578 (1330)
T ss_pred HHHHHHhhhh----------hcccceEEEeeccCCceeccHHHHHHHHhhc-----CCCEEEEecchHHHhhhhhHHHHH
Confidence 5788754322 2345678889999999999999998888776 34568899997 888888888775
Q ss_pred HhCC--CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc----cccCCCCcEEEEcCccccCCccc
Q 043990 265 WVGG--RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK----FSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 265 ~~~~--~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~----~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
.+.. ......+.+.-.++ +..+.-.++|+||-++-+....-. ......+.+||+||.|.+.|..-
T Consensus 579 RF~~~t~~rg~sl~g~ltqE-------Ysinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed 649 (1330)
T KOG0949|consen 579 RFDTKTFLRGVSLLGDLTQE-------YSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEED 649 (1330)
T ss_pred hhccCccccchhhHhhhhHH-------hcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcccccc
Confidence 5421 11112222222221 222223578999999877432211 11135678999999999988653
No 147
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.48 E-value=6.6e-06 Score=99.36 Aligned_cols=127 Identities=23% Similarity=0.311 Sum_probs=91.7
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWE 259 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~ 259 (911)
...|-+-|..++..+.... .+..-.+|.-.||+|||-.-+-+|...+.+| +.+||++|- +|..|-.
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~------~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-------kqvLvLVPEI~Ltpq~~ 262 (730)
T COG1198 196 WLALNQEQQAAVEAILSSL------GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-------KQVLVLVPEIALTPQLL 262 (730)
T ss_pred ccccCHHHHHHHHHHHHhc------ccccceeEeCCCCCcHHHHHHHHHHHHHHcC-------CEEEEEeccccchHHHH
Confidence 3467788999999887632 2355678899999999999999999999887 579999997 8889988
Q ss_pred HHHHHHhCCCeEEEEec--CCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCcccc
Q 043990 260 AEIKKWVGGRVQLIALC--ESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331 (911)
Q Consensus 260 ~Ei~k~~~~~~~v~~~~--~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~l 331 (911)
..|+..++..+.++.-. .+.+.+.+..+. .+...|||-|...+ |.-..+.++||+||=|--
T Consensus 263 ~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~-----~G~~~vVIGtRSAl------F~Pf~~LGLIIvDEEHD~ 325 (730)
T COG1198 263 ARFKARFGAKVAVLHSGLSPGERYRVWRRAR-----RGEARVVIGTRSAL------FLPFKNLGLIIVDEEHDS 325 (730)
T ss_pred HHHHHHhCCChhhhcccCChHHHHHHHHHHh-----cCCceEEEEechhh------cCchhhccEEEEeccccc
Confidence 88988887544333222 223333333322 25667999877654 333457889999999964
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=3.1e-05 Score=95.78 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEI 262 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei 262 (911)
.||.|++....+++.+. ..+.+++-.+||+|||+.+|+..+......+ ...+++..+.+ +-+.|-.+|+
T Consensus 11 ~y~~Q~~~m~~v~~~l~------~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLD------RGDEAILEMPSGTGKTISLLSLILAYQQEKP----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred CCHHHHHHHHHHHHHhc------cCCceEEeCCCCCCccHHHHHHHHHHHHhcc----ccccEEEEcccchHHHHHHHHH
Confidence 57999998888887652 2356689999999999998888777654321 23467777776 6778999999
Q ss_pred HH
Q 043990 263 KK 264 (911)
Q Consensus 263 ~k 264 (911)
++
T Consensus 81 k~ 82 (705)
T TIGR00604 81 RK 82 (705)
T ss_pred Hh
Confidence 88
No 149
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.46 E-value=0.00022 Score=90.62 Aligned_cols=94 Identities=18% Similarity=0.254 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCC--CEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCc
Q 043990 522 HVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRY--PYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599 (911)
Q Consensus 522 ~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi--~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkag 599 (911)
..+.+.|..+....+.+++||.....++..+...|..... .+..+.-+++...|.+++++|+.+.. .+|+.+...
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~---~iLlG~~sF 814 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK---AILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC---eEEEecCcc
Confidence 3445545444433455777777777888888888875422 13333323322468999999997443 377788899
Q ss_pred ccccCCCCC--CEEEEeCCCC
Q 043990 600 GCGLNLIGG--NRLVLFDPDW 618 (911)
Q Consensus 600 g~GLNL~~A--n~VIl~Dp~W 618 (911)
.+|+|+++. ..||+.-.|+
T Consensus 815 wEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred cCccccCCCceEEEEEecCCC
Confidence 999999975 7888888776
No 150
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.45 E-value=1.6e-05 Score=99.25 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccc
Q 043990 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCG 602 (911)
Q Consensus 523 ~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~G 602 (911)
.+.+.+..+.. .+.+++|+....+++..+...|....++. ...|... .|.+++++|+.++.. +|+.+..-.+|
T Consensus 635 ~~~~~i~~~~~-~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEG 707 (820)
T PRK07246 635 EIAKRLEELKQ-LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEG 707 (820)
T ss_pred HHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCC
Confidence 44554544443 56678887777788888888887665544 5556443 467799999874333 78888999999
Q ss_pred cCCCC--CCEEEEeCCC
Q 043990 603 LNLIG--GNRLVLFDPD 617 (911)
Q Consensus 603 LNL~~--An~VIl~Dp~ 617 (911)
+|+++ +..||+.-.|
T Consensus 708 VD~p~~~~~~viI~kLP 724 (820)
T PRK07246 708 VDFVQADRMIEVITRLP 724 (820)
T ss_pred CCCCCCCeEEEEEecCC
Confidence 99974 4556666544
No 151
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.43 E-value=9.2e-06 Score=100.38 Aligned_cols=154 Identities=15% Similarity=0.184 Sum_probs=98.9
Q ss_pred hhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHH
Q 043990 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNW 258 (911)
Q Consensus 180 l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW 258 (911)
+.-.|-|+|++++.-+- ...+++++..||.|||+.+-..+..-+..+ .+++-..|. .|..|=
T Consensus 116 ~~F~LD~fQ~~a~~~Le----------r~esVlV~ApTssGKTvVaeyAi~~al~~~-------qrviYTsPIKALsNQK 178 (1041)
T COG4581 116 YPFELDPFQQEAIAILE----------RGESVLVCAPTSSGKTVVAEYAIALALRDG-------QRVIYTSPIKALSNQK 178 (1041)
T ss_pred CCCCcCHHHHHHHHHHh----------CCCcEEEEccCCCCcchHHHHHHHHHHHcC-------CceEeccchhhhhhhH
Confidence 34467799999998763 346889999999999999998888777665 458899996 666776
Q ss_pred HHHHHHHhCCCeE-EEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcccc-ccCCCCcEEEEcCccccCCccc
Q 043990 259 EAEIKKWVGGRVQ-LIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKF-SCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 259 ~~Ei~k~~~~~~~-v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~-~~~~~~~lVIlDEAH~lKN~~s 336 (911)
.++|..-++.-.. +-.+.|+.. ......|+++|-+.+|+..-.- ........||+||.|.+....-
T Consensus 179 yrdl~~~fgdv~~~vGL~TGDv~------------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eR 246 (1041)
T COG4581 179 YRDLLAKFGDVADMVGLMTGDVS------------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRER 246 (1041)
T ss_pred HHHHHHHhhhhhhhccceeccee------------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecccccc
Confidence 7777766553100 111111111 1134568888889987543211 1234567899999999976543
Q ss_pred hhccCCHHHHHHhhhhcCCC---------CCCCHHHHHHHHh
Q 043990 337 LTNRNDLEEFFAMVNFTNPG---------ILGDAAYFRRYYE 369 (911)
Q Consensus 337 ~~~~N~l~El~sLl~fl~P~---------~l~~~~~F~~~f~ 369 (911)
.. .|-.+-.+.|. ..++..+|..++.
T Consensus 247 G~-------VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~ 281 (1041)
T COG4581 247 GV-------VWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQ 281 (1041)
T ss_pred ch-------hHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Confidence 22 34433333343 2467777776664
No 152
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.40 E-value=0.00027 Score=84.95 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=64.3
Q ss_pred HHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc-CCCEEEEeCCCCHHHHHHHHHhhcCCC-CCceEEEEecCCccccc
Q 043990 526 RLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-RYPYLRLDGTTSISKRQKLVNHFNDPS-KNEFVFLLSSKAGGCGL 603 (911)
Q Consensus 526 ~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~-gi~~~~LdGsts~~~R~~iv~~Fn~~~-~~~~v~LlStkagg~GL 603 (911)
.++..+....|.-.|+|+.|.. +..+...|... .++ +.+.|..+ .|..++++|+... ....-+|+.|....+|+
T Consensus 461 ~~~~~~~~~~G~~lvLfTS~~~-~~~~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 461 STAAILRKAQGGTLVLTTAFSH-ISAIGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHcCCCEEEEechHHH-HHHHHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 3334444445666777777765 45555556543 233 45567654 6788999998630 01124899999999999
Q ss_pred CC--------C--CCCEEEEeCCCCCcchHHHHHHhhhhc
Q 043990 604 NL--------I--GGNRLVLFDPDWNPANDKQAAARVWRD 633 (911)
Q Consensus 604 NL--------~--~An~VIl~Dp~WNPa~~~QAigR~~Ri 633 (911)
|+ + ..+.||+.-.|+-|..- . .|+.|+
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp-~--a~~~~~ 573 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLNRS-L--SMLKRI 573 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcCCh-H--HHHHHH
Confidence 99 2 47899999988877333 2 455444
No 153
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.37 E-value=1.5e-05 Score=95.78 Aligned_cols=113 Identities=16% Similarity=0.304 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecC
Q 043990 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSK 597 (911)
Q Consensus 518 S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStk 597 (911)
+.+..+...|+..+. .|++|.|||.....++++++++...+.++..++|..+..+ ++.+. .+.+++=|.
T Consensus 266 ~~~~tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W~-----~~~VviYT~ 334 (824)
T PF02399_consen 266 NDETTFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESWK-----KYDVVIYTP 334 (824)
T ss_pred cchhhHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccccc-----ceeEEEEec
Confidence 444556777777776 4899999999999999999999999999999998776552 23332 234777778
Q ss_pred CcccccCCC--CCCEEEEe--CCCCCcc--hHHHHHHhhhhcCCcccEEEE
Q 043990 598 AGGCGLNLI--GGNRLVLF--DPDWNPA--NDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 598 agg~GLNL~--~An~VIl~--Dp~WNPa--~~~QAigR~~RiGQkk~V~Vy 642 (911)
+.++|+++- ..+.|+.| .....|. ...|.+||+-.++. ++++||
T Consensus 335 ~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 335 VITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred eEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 888999885 45666666 2223344 35899999988764 455555
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.36 E-value=8.2e-05 Score=91.40 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=99.9
Q ss_pred ccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEE
Q 043990 514 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFL 593 (911)
Q Consensus 514 ~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~L 593 (911)
+.....|..++.+-+..+.. .|+.|||-+.+...-+.|.++|...|+++-.|..... .+=..+|.+= |..+ .+-
T Consensus 607 y~t~~eK~~Aii~ei~~~~~-~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A--G~~G--aVT 680 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSE-AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA--GQPG--TVT 680 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHH-CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc--CCCC--cEE
Confidence 34456788888888888776 7999999999999999999999999999988877644 2333555543 2233 489
Q ss_pred EecCCcccccCCC--------CCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 594 LSSKAGGCGLNLI--------GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 594 lStkagg~GLNL~--------~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
|+|..+|+|-|+. |.=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 681 IATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 681 IATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred EeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 9999999999975 667999999999999999999999999988654444
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.32 E-value=0.00017 Score=88.85 Aligned_cols=113 Identities=18% Similarity=0.289 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCC-EEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCccc
Q 043990 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP-YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGC 601 (911)
Q Consensus 523 ~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~-~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~ 601 (911)
.+...+..+....+.++|||...-..+..+...+...... .+...|..+ +..++++|.....+ .|++.+....+
T Consensus 466 ~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~E 540 (654)
T COG1199 466 KLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWE 540 (654)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccC
Confidence 3444444443334558888888888999999998877653 455555554 44899999875443 58999999999
Q ss_pred ccCCCCC--CEEEEeCCCCC-c-----------------------------chHHHHHHhhhhcCCcccEE
Q 043990 602 GLNLIGG--NRLVLFDPDWN-P-----------------------------ANDKQAAARVWRDGQKKRVF 640 (911)
Q Consensus 602 GLNL~~A--n~VIl~Dp~WN-P-----------------------------a~~~QAigR~~RiGQkk~V~ 640 (911)
|+|+++- ..||+.-.|+- | ....|++||+.|--+.+-|.
T Consensus 541 GVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 541 GVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred cccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 9999864 78888876663 2 24469999999944444443
No 156
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.32 E-value=0.00021 Score=87.00 Aligned_cols=88 Identities=14% Similarity=0.274 Sum_probs=69.5
Q ss_pred ccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCC-CCHHHHHHHHHhhcCCCCCceEE
Q 043990 514 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 514 ~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGs-ts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
+.....|..++.+-+..+.. .|+.|||-+......+.|..+|...|+++..|+.. ...++-..+|.+= |..+ .+
T Consensus 418 y~t~~~K~~Ai~~ei~~~~~-~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G~~G--aV 492 (939)
T PRK12902 418 YKTEIAKWRAVANETAEMHK-QGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--GRKG--AV 492 (939)
T ss_pred EcCHHHHHHHHHHHHHHHHh-CCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--CCCC--cE
Confidence 34456888888887777765 69999999999999999999999999999999986 3434455667663 3334 48
Q ss_pred EEecCCcccccCCC
Q 043990 593 LLSSKAGGCGLNLI 606 (911)
Q Consensus 593 LlStkagg~GLNL~ 606 (911)
-|+|..+|+|-|+.
T Consensus 493 TIATNMAGRGTDIk 506 (939)
T PRK12902 493 TIATNMAGRGTDII 506 (939)
T ss_pred EEeccCCCCCcCEe
Confidence 99999999997653
No 157
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.31 E-value=6.4e-05 Score=92.36 Aligned_cols=123 Identities=16% Similarity=0.204 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCC
Q 043990 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE----RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKA 598 (911)
Q Consensus 523 ~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~----~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStka 598 (911)
.+...+.........-||||-.-...++...+.|.. ....++-|+|.++.++..+ -|+....+..-+++||..
T Consensus 246 ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNI 322 (845)
T COG1643 246 AIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNI 322 (845)
T ss_pred HHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccc
Confidence 344444444444567899999988888888888887 3466788999999988887 455433343448999999
Q ss_pred cccccCCCCCCEEE--------EeCCC----------CCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 043990 599 GGCGLNLIGGNRLV--------LFDPD----------WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIE 651 (911)
Q Consensus 599 gg~GLNL~~An~VI--------l~Dp~----------WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIE 651 (911)
+.++|++.+...|| .|++- -+-+.-.||.||++| +.+-.+|||.+++..+
T Consensus 323 AETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 323 AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred cccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 99999999988886 33331 234556677777766 6788899999986555
No 158
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.25 E-value=0.0001 Score=86.16 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=83.8
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHc----C--C--CEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCC
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRER----R--Y--PYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLI 606 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~----g--i--~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~ 606 (911)
+..-||||=.-.+.++.....|.+. + + -+.-++|+++.++..++ |.....+.+-+++||..+...|.+.
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTID 333 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEec
Confidence 4457999988888888777777664 1 1 14678999998887654 6655556677999999999999999
Q ss_pred CCCEEE--------EeCCCC-------CcchHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 043990 607 GGNRLV--------LFDPDW-------NPANDKQAAARVWRDGQKKRVFIYRFLSTGTI 650 (911)
Q Consensus 607 ~An~VI--------l~Dp~W-------NPa~~~QAigR~~RiGQkk~V~VyrLi~~gTI 650 (911)
|..+|| .|+|-- -|..-.||.-|++|.|.+.+..+|||.++.-.
T Consensus 334 GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 334 GIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred ceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 988775 333310 12355677778888888999999999997765
No 159
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.20 E-value=2.9e-05 Score=93.53 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHH----hhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHH-HHH
Q 043990 186 PHQREGVQFMFE----CVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSN-WEA 260 (911)
Q Consensus 186 phQ~egV~~m~~----~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~q-W~~ 260 (911)
-|+..|+..|++ |+.-- +-..++.+|.+.+++.|||+.+=.+|+...-. ..+.+|.+.|--.+.+ =..
T Consensus 215 ~~~~kgi~~~fewq~ecls~~-~~~e~~nliys~Pts~gktlvaeilml~~~l~------~rr~~llilp~vsiv~Ek~~ 287 (1008)
T KOG0950|consen 215 YAKDKGILKLFEWQAECLSLP-RLLERKNLIYSLPTSAGKTLVAEILMLREVLC------RRRNVLLILPYVSIVQEKIS 287 (1008)
T ss_pred HHHhhhHHHHHHHHHHHhcch-hhhcccceEEeCCCccchHHHHHHHHHHHHHH------HhhceeEecceeehhHHHHh
Confidence 456666654443 33211 11256789999999999999987766554322 1356888888644444 334
Q ss_pred HHHHHhC-CCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcccccc---CCCCcEEEEcCccccCC
Q 043990 261 EIKKWVG-GRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSC---SESCDLLICDEAHRLKN 333 (911)
Q Consensus 261 Ei~k~~~-~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~---~~~~~lVIlDEAH~lKN 333 (911)
++..+.- .++.+-.++|...... ...+-.|.|+|.|.-......+.. ....++||+||-|.+..
T Consensus 288 ~l~~~~~~~G~~ve~y~g~~~p~~---------~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 288 ALSPFSIDLGFPVEEYAGRFPPEK---------RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred hhhhhccccCCcchhhcccCCCCC---------cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 4444432 2344444443322211 123456999999987555544332 34568999999999854
No 160
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.19 E-value=4.1e-05 Score=88.62 Aligned_cols=107 Identities=14% Similarity=0.229 Sum_probs=69.1
Q ss_pred CCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCC----CCCc-----------chHH
Q 043990 560 RYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDP----DWNP-----------ANDK 624 (911)
Q Consensus 560 gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp----~WNP-----------a~~~ 624 (911)
++.++-|...++.....++ |+....+..-++++|..+.+.|.+.+..+||=.-- .+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 4566777777886665554 55555667779999999999999999888873210 1222 2223
Q ss_pred HHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHH---HHHHHHHHHHHH
Q 043990 625 QAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQR---QMSKEGLQKVIQ 669 (911)
Q Consensus 625 QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~r---q~~K~~L~~~v~ 669 (911)
||--|++|.|.+.+-..||+.+..+..+.++.. -....+|.++|+
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHH
Confidence 334444445557788999999998887766521 122344555553
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.14 E-value=0.00027 Score=89.55 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=85.0
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.-+.||..+|+-..+...........+||++-+=.|+|||++++-++..++.. +....++||+-- -|-.|-.++
T Consensus 248 ~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~ 322 (962)
T COG0610 248 YQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDE 322 (962)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHH
Confidence 34455555555333222111111334678999999999999998888777665 245578888886 566888999
Q ss_pred HHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcccc---ccCCCCcEEEEcCccccCCc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKF---SCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~---~~~~~~~lVIlDEAH~lKN~ 334 (911)
|..+........ ...+.......+.. ....|+|||-+.|......- ......-+||+|||||--..
T Consensus 323 f~~~~~~~~~~~--~~~s~~~Lk~~l~~-----~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G 391 (962)
T COG0610 323 FQSFGKVAFNDP--KAESTSELKELLED-----GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG 391 (962)
T ss_pred HHHHHHhhhhcc--cccCHHHHHHHHhc-----CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc
Confidence 998865422211 22222222222221 13469999999986544321 11334558999999996543
No 162
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.09 E-value=2.2e-05 Score=96.80 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=56.8
Q ss_pred ceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhc-----CCc---ccEEEEEEEeCCCHHHHHHHHH
Q 043990 589 EFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRD-----GQK---KRVFIYRFLSTGTIEEKVYQRQ 658 (911)
Q Consensus 589 ~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~Ri-----GQk---k~V~VyrLi~~gTIEEkI~~rq 658 (911)
...|+.|-.|+.+|.+-+.+-.+.-+...-+...-.|-+||+.|+ |.. ..+ +..+++..|-++-.-.+|
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa~~LQ 577 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFASKLV 577 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHHHHHH
Confidence 557999999999999999999999999889999999999999997 332 345 666778888777665554
No 163
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.04 E-value=8.1e-06 Score=87.97 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=71.2
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCC-------CE-EEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGG-------NR-LVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~A-------n~-VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
...+.|+++... |+++ +.||++|+.|++- .+ -|.++++|+....+|.+||+||-||..+..+..+++.-
T Consensus 52 ~e~~~F~~g~k~--v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD--VAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce--EEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456799997544 4444 6999999999852 23 46899999999999999999999999874333344444
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhccc
Q 043990 649 TIEEKVYQRQMSKEGLQKVIQQEQT 673 (911)
Q Consensus 649 TIEEkI~~rq~~K~~L~~~v~~~~~ 673 (911)
..|.+......+|..-..++..++.
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccCcc
Confidence 5788888888888877777666543
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.91 E-value=6.2e-05 Score=72.95 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=56.2
Q ss_pred EEEcCCCchHHHHHHHH-HHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCccc
Q 043990 212 ILADDMGLGKTLQSIAL-LYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290 (911)
Q Consensus 212 ILADemGLGKTlqaIal-i~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~ 290 (911)
+|-.-+|.|||...+-- +...+.+ ..++||+.|+..+. +|+.+.+.+. .+ .+.......
T Consensus 8 ~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva---~em~~aL~~~-~~-~~~t~~~~~-------- 67 (148)
T PF07652_consen 8 VLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVA---EEMYEALKGL-PV-RFHTNARMR-------- 67 (148)
T ss_dssp EEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHH---HHHHHHTTTS-SE-EEESTTSS---------
T ss_pred EEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHH---HHHHHHHhcC-Cc-ccCceeeec--------
Confidence 67778999999987754 3334443 35899999998763 4555555541 11 111111100
Q ss_pred CCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCcccc
Q 043990 291 TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331 (911)
Q Consensus 291 ~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~l 331 (911)
...+..-|-+++|.++......-.....|++|||||||-.
T Consensus 68 -~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 68 -THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT 107 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--
T ss_pred -cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC
Confidence 0113445888999988544433334578999999999974
No 165
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.90 E-value=0.00058 Score=84.01 Aligned_cols=124 Identities=16% Similarity=0.257 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHhhcC-CCeEEEEEcchHHHHHHHHHHHHc-------CCCEEEEeCCCCHHHHHHHHHhhcCCCCCce
Q 043990 519 GKMHVLARLLGHLRQRT-DDRIVLVSNYTQTLDLFAQLCRER-------RYPYLRLDGTTSISKRQKLVNHFNDPSKNEF 590 (911)
Q Consensus 519 ~Kl~~L~~LL~~l~~~~-~~KVIIFSq~~~~ld~L~~~L~~~-------gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~ 590 (911)
-....+..++..+.... ...||||-.-...+..+...|... .+-...++++++..+.+.+ |+.+..+..
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 45667777777776532 458999999888877777777542 2446778999998777664 666666666
Q ss_pred EEEEecCCcccccCCCCCCEEE--------EeCC----------CCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 591 VFLLSSKAGGCGLNLIGGNRLV--------LFDP----------DWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 591 v~LlStkagg~GLNL~~An~VI--------l~Dp----------~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
-++++|..+...|.+..+-+|| .||| |-+.++-.||.||++| .++-.+|+|++..
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRS 544 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechh
Confidence 7999999999999998777665 4565 3355777899998887 5677888888754
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.76 E-value=0.00021 Score=78.67 Aligned_cols=74 Identities=27% Similarity=0.222 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHHH
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEIK 263 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei~ 263 (911)
||.|++-+..+++.+. .+ ..+|+-.++|+|||+..+..+...+.......+ ..++++++++ +++.+-..+++
T Consensus 10 r~~Q~~~m~~v~~~~~-----~~-~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~-~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 10 YPIQYEFMEELKRVLD-----RG-KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQ-KIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CHHHHHHHHHHHHHHH-----cC-CcEEEECCCCcchhHHHHHHHHHHHHhCccccc-ccceeEEeccHHHHHHHHHHHH
Confidence 7999998888877542 22 356888999999999988877655443211101 1367888887 44555556666
Q ss_pred HH
Q 043990 264 KW 265 (911)
Q Consensus 264 k~ 265 (911)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 54
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.76 E-value=0.00021 Score=78.67 Aligned_cols=74 Identities=27% Similarity=0.222 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHHH
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEIK 263 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei~ 263 (911)
||.|++-+..+++.+. .+ ..+|+-.++|+|||+..+..+...+.......+ ..++++++++ +++.+-..+++
T Consensus 10 r~~Q~~~m~~v~~~~~-----~~-~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~-~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 10 YPIQYEFMEELKRVLD-----RG-KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQ-KIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CHHHHHHHHHHHHHHH-----cC-CcEEEECCCCcchhHHHHHHHHHHHHhCccccc-ccceeEEeccHHHHHHHHHHHH
Confidence 7999998888877542 22 356888999999999988877655443211101 1367888887 44555556666
Q ss_pred HH
Q 043990 264 KW 265 (911)
Q Consensus 264 k~ 265 (911)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 54
No 168
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.60 E-value=0.0018 Score=75.53 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=57.1
Q ss_pred EEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCC--------------------Ccch
Q 043990 563 YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDW--------------------NPAN 622 (911)
Q Consensus 563 ~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~W--------------------NPa~ 622 (911)
++-|+.+.|.....++ |..-..+..-++++|..+.+.|.+.+...|| ||.+ +.+.
T Consensus 509 v~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSKAs 583 (902)
T KOG0923|consen 509 VLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKAS 583 (902)
T ss_pred EeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeechhh
Confidence 5667888888877766 4433334556888999999999999988876 5543 3356
Q ss_pred HHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 043990 623 DKQAAARVWRDGQKKRVFIYRFLSTGTI 650 (911)
Q Consensus 623 ~~QAigR~~RiGQkk~V~VyrLi~~gTI 650 (911)
-.||.||++|.| +-..|||.+..+.
T Consensus 584 A~QRaGRAGRtg---PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 584 ANQRAGRAGRTG---PGKCFRLYTAWAY 608 (902)
T ss_pred hhhhccccCCCC---CCceEEeechhhh
Confidence 678888888866 5557888875543
No 169
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.0035 Score=74.51 Aligned_cols=64 Identities=30% Similarity=0.511 Sum_probs=49.5
Q ss_pred hhcCCCCCceEEEEecCCcccccCCCCCCEEE--------EeCC---------CC-CcchHHHHHHhhhhcCCcccEEEE
Q 043990 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLV--------LFDP---------DW-NPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 581 ~Fn~~~~~~~v~LlStkagg~GLNL~~An~VI--------l~Dp---------~W-NPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
-|.....+.+..+++|.++.+.|.+++..+|| +||. .| +.|.-.||.||++|+| +-+.|
T Consensus 622 VF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcY 698 (1172)
T KOG0926|consen 622 VFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCY 698 (1172)
T ss_pred hccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCcee
Confidence 45555557788999999999999999999998 3332 33 6677889999999977 56788
Q ss_pred EEEeC
Q 043990 643 RFLST 647 (911)
Q Consensus 643 rLi~~ 647 (911)
||...
T Consensus 699 RLYSS 703 (1172)
T KOG0926|consen 699 RLYSS 703 (1172)
T ss_pred ehhhh
Confidence 88653
No 170
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.38 E-value=0.00061 Score=71.66 Aligned_cols=72 Identities=28% Similarity=0.341 Sum_probs=45.1
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCc-eEEEcCCCchHHHHHHHHHHHHHhcC-CCCCCCCceEEEEeCc-hhhHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHG-CILADDMGLGKTLQSIALLYTLLCQG-FDGKPMVKKAIIVTPT-SLVSNWE 259 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G-~ILADemGLGKTlqaIali~~ll~~g-~~~~p~~~~~LIV~P~-sLl~qW~ 259 (911)
+|-+.|+++|..++. ..+ +++.-+.|+|||-+..+++..+...- .......+++||++|+ ..+.+-.
T Consensus 1 ~ln~~Q~~Ai~~~~~----------~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~ 70 (236)
T PF13086_consen 1 KLNESQREAIQSALS----------SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNIL 70 (236)
T ss_dssp ---HHHHHHHHHHCT----------SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----------CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHH
Confidence 366999999987742 234 68889999999988777777763210 0001135689999998 4566666
Q ss_pred HHHHH
Q 043990 260 AEIKK 264 (911)
Q Consensus 260 ~Ei~k 264 (911)
..+.+
T Consensus 71 ~~l~~ 75 (236)
T PF13086_consen 71 ERLKK 75 (236)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 66666
No 171
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.20 E-value=0.083 Score=66.16 Aligned_cols=47 Identities=23% Similarity=0.238 Sum_probs=35.1
Q ss_pred CceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcc
Q 043990 588 NEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK 637 (911)
Q Consensus 588 ~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk 637 (911)
+...++|+|.+...|+|+- .+.+|- |+. .-...+|++||++|-|+..
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCC
Confidence 4557999999999999984 454443 332 2356899999999999864
No 172
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.18 E-value=0.0076 Score=73.53 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=93.2
Q ss_pred CCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCce
Q 043990 511 DGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEF 590 (911)
Q Consensus 511 ~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~ 590 (911)
+..+.....|..++.+-+..... .|.+|||-+.+....+.+.++|.+.|++...|...-. .|..-+-.+. |..+
T Consensus 405 D~vy~t~~~K~~Aiv~~I~~~~~-~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G~~g-- 478 (822)
T COG0653 405 DLVYKTEEEKFKAIVEDIKERHE-KGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-GQPG-- 478 (822)
T ss_pred cccccchHHHHHHHHHHHHHHHh-cCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-CCCC--
Confidence 44556667899888888888876 6999999999999999999999999999999988766 3333332332 2223
Q ss_pred EEEEecCCcccccCCC-CCC----------EEEEeCCCCCcchHHHHHHhhhhcCCc
Q 043990 591 VFLLSSKAGGCGLNLI-GGN----------RLVLFDPDWNPANDKQAAARVWRDGQK 636 (911)
Q Consensus 591 v~LlStkagg~GLNL~-~An----------~VIl~Dp~WNPa~~~QAigR~~RiGQk 636 (911)
.+-++|..+|+|-++. +.+ +||=-+-.=+-..+.|-.||++|.|-.
T Consensus 479 aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 479 AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 4788999999999986 333 566667777777888999999999943
No 173
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.03 E-value=0.019 Score=65.07 Aligned_cols=111 Identities=14% Similarity=0.201 Sum_probs=68.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHhhc--CCCCCceEEEEecCCccccc
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRER---------RYPYLRLDGTTSISKRQKLVNHFN--DPSKNEFVFLLSSKAGGCGL 603 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~---------gi~~~~LdGsts~~~R~~iv~~Fn--~~~~~~~v~LlStkagg~GL 603 (911)
...-||||-.-.+.++...+.+... .++++-|+ .++.+.+.+--. ......+.+++||..+...|
T Consensus 252 e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsl 327 (699)
T KOG0925|consen 252 EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSL 327 (699)
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheee
Confidence 3457888877766555444444321 12344444 223333322111 11122345889999999999
Q ss_pred CCCCCCEEEEeCCC------CC-----------cchHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 043990 604 NLIGGNRLVLFDPD------WN-----------PANDKQAAARVWRDGQKKRVFIYRFLSTGTIE 651 (911)
Q Consensus 604 NL~~An~VIl~Dp~------WN-----------Pa~~~QAigR~~RiGQkk~V~VyrLi~~gTIE 651 (911)
.+.+.-+|| ||. +| |..-.||..|++|.|.+++-..+||.++...+
T Consensus 328 tidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 328 TIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred eeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 888765554 654 34 44566899999999999999999999865444
No 174
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.50 E-value=0.0059 Score=69.33 Aligned_cols=91 Identities=21% Similarity=0.209 Sum_probs=52.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH-HHHHHHHhCCCeEEEEecCCcchhhhccCccc
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW-EAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW-~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~ 290 (911)
|+--..|+|||+.++.++..+.... ....++++|+...+.+. ...+.+-...
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~~-----~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------------- 57 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNSE-----EGKKVLYLCGNHPLRNKLREQLAKKYNP---------------------- 57 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhccc-----cCCceEEEEecchHHHHHHHHHhhhccc----------------------
Confidence 3444589999999999998882111 13467888887655554 4444433200
Q ss_pred CCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCC
Q 043990 291 TDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 291 ~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN 333 (911)
......+..+..+..... .-.....+|+|||||||++..
T Consensus 58 ----~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ----KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ----chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 001122233333322221 111246799999999999965
No 175
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.49 E-value=0.019 Score=62.17 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=73.7
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh----HHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV----SNW 258 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl----~qW 258 (911)
.+|+-|.-|+-.| ..|-|.-..||=|||+++..++......| +++=|||.+.-+ .+|
T Consensus 77 ~p~~vQll~~l~L------------~~G~laEm~TGEGKTli~~l~a~~~AL~G-------~~V~vvT~NdyLA~RD~~~ 137 (266)
T PF07517_consen 77 RPYDVQLLGALAL------------HKGRLAEMKTGEGKTLIAALPAALNALQG-------KGVHVVTSNDYLAKRDAEE 137 (266)
T ss_dssp ---HHHHHHHHHH------------HTTSEEEESTTSHHHHHHHHHHHHHHTTS-------S-EEEEESSHHHHHHHHHH
T ss_pred cccHHHHhhhhhc------------ccceeEEecCCCCcHHHHHHHHHHHHHhc-------CCcEEEeccHHHhhccHHH
Confidence 4456677776544 24668889999999999876665554444 468888888665 679
Q ss_pred HHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhh-----cc---ccccCCCCcEEEEcCccc
Q 043990 259 EAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMH-----SS---KFSCSESCDLLICDEAHR 330 (911)
Q Consensus 259 ~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~-----~~---~~~~~~~~~lVIlDEAH~ 330 (911)
...+-++++. .+-.+........... . -..+|+-+|-..|..+ .. .......++++|+||+..
T Consensus 138 ~~~~y~~LGl--sv~~~~~~~~~~~r~~--~-----Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs 208 (266)
T PF07517_consen 138 MRPFYEFLGL--SVGIITSDMSSEERRE--A-----YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDS 208 (266)
T ss_dssp HHHHHHHTT----EEEEETTTEHHHHHH--H-----HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHH
T ss_pred HHHHHHHhhh--ccccCccccCHHHHHH--H-----HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccce
Confidence 9999999874 4434443332221111 1 1246888887766321 11 111135789999999997
Q ss_pred cC
Q 043990 331 LK 332 (911)
Q Consensus 331 lK 332 (911)
+-
T Consensus 209 ~L 210 (266)
T PF07517_consen 209 IL 210 (266)
T ss_dssp HT
T ss_pred EE
Confidence 63
No 176
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.28 E-value=0.018 Score=66.07 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=89.8
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH----cCC----CEEEEeCCCCHHHHHHHHHhhcCCCCC
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE----RRY----PYLRLDGTTSISKRQKLVNHFNDPSKN 588 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~----~gi----~~~~LdGsts~~~R~~iv~~Fn~~~~~ 588 (911)
.+.|+....+++..+.. .+-|+|-||..+...+++-...+. -|- .+..+.|+-..++|.++-...=.|
T Consensus 507 ~~~~i~E~s~~~~~~i~-~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G--- 582 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQ-HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG--- 582 (1034)
T ss_pred hhhHHHHHHHHHHHHHH-cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC---
Confidence 36677777778888776 588999999999887766544332 221 134467888889999987665443
Q ss_pred ceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcC
Q 043990 589 EFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634 (911)
Q Consensus 589 ~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiG 634 (911)
...-+|+|.|...||++-+-+.|++.--|.+-+++.|..||++|-.
T Consensus 583 ~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 583 KLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN 628 (1034)
T ss_pred eeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccC
Confidence 3347899999999999999999999999999999999999999954
No 177
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.24 E-value=0.018 Score=58.20 Aligned_cols=77 Identities=16% Similarity=0.288 Sum_probs=54.0
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcC----CCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecC--CcccccCCCC-
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERR----YPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSK--AGGCGLNLIG- 607 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~g----i~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStk--agg~GLNL~~- 607 (911)
.+.++|||...-+.++.+...+...+ +... ..+ ...+.+++++|..+.. .+|+++. ...+|+|+.+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q~---~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQG---SKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-EST---CCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--ECE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ecC---cchHHHHHHHHHhccC---eEEEEEecccEEEeecCCCc
Confidence 56899999999999999999888653 3322 222 3478899999998433 4777776 8999999985
Q ss_pred -CCEEEEeCCCC
Q 043990 608 -GNRLVLFDPDW 618 (911)
Q Consensus 608 -An~VIl~Dp~W 618 (911)
+..||+.-.|+
T Consensus 81 ~~r~vii~glPf 92 (167)
T PF13307_consen 81 LLRAVIIVGLPF 92 (167)
T ss_dssp SEEEEEEES---
T ss_pred hhheeeecCCCC
Confidence 77899988776
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.00 E-value=0.0031 Score=65.62 Aligned_cols=55 Identities=24% Similarity=0.305 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV 255 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl 255 (911)
++|+..+..+.+ ..-.++--..|+|||+.|++....++..+ ..++++|+-|..-+
T Consensus 7 ~~Q~~~~~al~~----------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-----~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 7 EEQKFALDALLN----------NDLVIVNGPAGTGKTFLALAAALELVKEG-----EYDKIIITRPPVEA 61 (205)
T ss_dssp HHHHHHHHHHHH-----------SEEEEE--TTSSTTHHHHHHHHHHHHTT-----S-SEEEEEE-S--T
T ss_pred HHHHHHHHHHHh----------CCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCcEEEEEecCCCC
Confidence 889999998864 23446777899999999999999888776 46788888887533
No 179
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.96 E-value=0.017 Score=70.54 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=69.0
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHHHHHhCCCeEEEEecCCcch-hhhccCcccCCCC
Q 043990 217 MGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEIKKWVGGRVQLIALCESTRD-DVVSGIDSFTDPC 294 (911)
Q Consensus 217 mGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~-~~~~~~~~~~~~~ 294 (911)
.|+|||-..+.++...+..| +.+||++|. ++..|+...|.+.++. ..+..++..... +....+... ..
T Consensus 169 ~GSGKTevyl~~i~~~l~~G-------k~vLvLvPEi~lt~q~~~rl~~~f~~-~~v~~lhS~l~~~~R~~~w~~~--~~ 238 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG-------RGALVVVPDQRDVDRLEAALRALLGA-GDVAVLSAGLGPADRYRRWLAV--LR 238 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC-------CeEEEEecchhhHHHHHHHHHHHcCC-CcEEEECCCCCHHHHHHHHHHH--hC
Confidence 59999999999999988876 469999998 8889999999999972 234445443222 111111111 13
Q ss_pred CCccEEEEehHHHHhhccccccCCCCcEEEEcCcccc
Q 043990 295 SSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331 (911)
Q Consensus 295 ~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~l 331 (911)
+...|||-|...+ |.-..+.++|||||=|.-
T Consensus 239 G~~~IViGtRSAv------FaP~~~LgLIIvdEEhd~ 269 (665)
T PRK14873 239 GQARVVVGTRSAV------FAPVEDLGLVAIWDDGDD 269 (665)
T ss_pred CCCcEEEEcceeE------EeccCCCCEEEEEcCCch
Confidence 5567999877543 333457899999999953
No 180
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.96 E-value=0.017 Score=67.55 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=52.6
Q ss_pred hhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh-hHH
Q 043990 179 LLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL-VSN 257 (911)
Q Consensus 179 ~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL-l~q 257 (911)
.+...|-+-|+.||.++... + .=.++--++|+|||.+...+|..+..++ +++||.+|+.+ |.|
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~--------k-~l~~I~GPPGTGKT~TlvEiI~qlvk~~-------k~VLVcaPSn~AVdN 244 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINN--------K-DLLIIHGPPGTGKTRTLVEIISQLVKQK-------KRVLVCAPSNVAVDN 244 (649)
T ss_pred cCCccccHHHHHHHHHHhcc--------C-CceEeeCCCCCCceeeHHHHHHHHHHcC-------CeEEEEcCchHHHHH
Confidence 35567789999999998642 1 2336677899999999999999998875 68999999965 566
Q ss_pred HHHHH
Q 043990 258 WEAEI 262 (911)
Q Consensus 258 W~~Ei 262 (911)
-.+.+
T Consensus 245 iverl 249 (649)
T KOG1803|consen 245 IVERL 249 (649)
T ss_pred HHHHh
Confidence 66643
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.90 E-value=0.09 Score=54.56 Aligned_cols=57 Identities=33% Similarity=0.400 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV 255 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl 255 (911)
|-+-|++++..++. .+.+-++|.-..|+|||.....+...+...+ .++++++|+.-.
T Consensus 2 L~~~Q~~a~~~~l~--------~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-------~~v~~~apT~~A 58 (196)
T PF13604_consen 2 LNEEQREAVRAILT--------SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-------KRVIGLAPTNKA 58 (196)
T ss_dssp S-HHHHHHHHHHHH--------CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---------EEEEESSHHH
T ss_pred CCHHHHHHHHHHHh--------cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-------CeEEEECCcHHH
Confidence 66889999999864 2334467778899999987666655554433 579999999643
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.79 E-value=0.021 Score=60.18 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=59.7
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAE 261 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~E 261 (911)
-.|||-|.+.+..|.+ .....+.++-.-||-|||-+.+-++...+..| .+=+-+|+|..|+.|-..-
T Consensus 22 iliR~~Q~~ia~~mi~-------~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg------~~LvrviVpk~Ll~q~~~~ 88 (229)
T PF12340_consen 22 ILIRPVQVEIAREMIS-------PPSGKNSVMQLNMGEGKTSVIVPMLALALADG------SRLVRVIVPKALLEQMRQM 88 (229)
T ss_pred ceeeHHHHHHHHHHhC-------CCCCCCeEeeecccCCccchHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHHH
Confidence 4689999999998864 23446779999999999999888887777665 3457899999999998888
Q ss_pred HHHHhCC
Q 043990 262 IKKWVGG 268 (911)
Q Consensus 262 i~k~~~~ 268 (911)
+..-+++
T Consensus 89 L~~~lg~ 95 (229)
T PF12340_consen 89 LRSRLGG 95 (229)
T ss_pred HHHHHHH
Confidence 8877664
No 183
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.60 E-value=0.095 Score=64.92 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc-CCCEEEEeCCCCHHHHHHHHHhhcC----CCCCceEEEEe
Q 043990 521 MHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-RYPYLRLDGTTSISKRQKLVNHFND----PSKNEFVFLLS 595 (911)
Q Consensus 521 l~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~-gi~~~~LdGsts~~~R~~iv~~Fn~----~~~~~~v~LlS 595 (911)
...+.+.|..+.. .+.+++||...-.+++.+...|... ++. +...|.. .|.++++.|.+ +.. .+|+.
T Consensus 520 ~~~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~---~VL~g 591 (697)
T PRK11747 520 TAEMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEG---SVLFG 591 (697)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCC---eEEEE
Confidence 3455555555544 3445677666667778888877643 333 4455642 57788877763 222 37777
Q ss_pred cCCcccccCCCC--CCEEEEeCCCC
Q 043990 596 SKAGGCGLNLIG--GNRLVLFDPDW 618 (911)
Q Consensus 596 tkagg~GLNL~~--An~VIl~Dp~W 618 (911)
+....+|+|+++ +..||+.-.|+
T Consensus 592 ~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 592 LQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred eccccccccCCCCceEEEEEEcCCC
Confidence 788999999986 68899988776
No 184
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.39 E-value=0.036 Score=67.81 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=81.8
Q ss_pred cccChhhhc----cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 174 ITVDPLLVR----FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 174 v~v~p~l~~----~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
.+++|.+.. .|-.-|++|+...+.+... --|++. +|+|||-+..+++..|+..| +++|+.
T Consensus 656 ~~~~p~~~~~~~~~LN~dQr~A~~k~L~aedy--------~LI~GM-PGTGKTTtI~~LIkiL~~~g-------kkVLLt 719 (1100)
T KOG1805|consen 656 KVLIPKIKKIILLRLNNDQRQALLKALAAEDY--------ALILGM-PGTGKTTTISLLIKILVALG-------KKVLLT 719 (1100)
T ss_pred cccCchhhHHHHhhcCHHHHHHHHHHHhccch--------heeecC-CCCCchhhHHHHHHHHHHcC-------CeEEEE
Confidence 445555555 8999999999988764422 224433 79999999999998887765 678988
Q ss_pred eCc-hhhHHHHHHHHHHhCCCeEEEEecCCcch-hhhccCc-----------ccCCCCCCccEEEEehHHHHhhcccccc
Q 043990 250 TPT-SLVSNWEAEIKKWVGGRVQLIALCESTRD-DVVSGID-----------SFTDPCSSLQVLIVSYETFRMHSSKFSC 316 (911)
Q Consensus 250 ~P~-sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~-~~~~~~~-----------~~~~~~~~~~VvI~Sye~l~~~~~~~~~ 316 (911)
+=+ +-|.|---.+.++ .+.++.++...+- ...+..- .+........||.+|---+. ..+..
T Consensus 720 syThsAVDNILiKL~~~---~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~---~plf~ 793 (1100)
T KOG1805|consen 720 SYTHSAVDNILIKLKGF---GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN---HPLFV 793 (1100)
T ss_pred ehhhHHHHHHHHHHhcc---CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC---chhhh
Confidence 887 5577776666554 3444433332221 1111100 00011233445555532221 11222
Q ss_pred CCCCcEEEEcCccccCC
Q 043990 317 SESCDLLICDEAHRLKN 333 (911)
Q Consensus 317 ~~~~~lVIlDEAH~lKN 333 (911)
...||++|+|||-.+--
T Consensus 794 ~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQILL 810 (1100)
T ss_pred ccccCEEEEcccccccc
Confidence 45699999999998743
No 185
>PRK04296 thymidine kinase; Provisional
Probab=95.38 E-value=0.024 Score=58.55 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=25.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P 251 (911)
++.-+||.|||..++.++..+...+ .+++|+.|
T Consensus 6 litG~~GsGKTT~~l~~~~~~~~~g-------~~v~i~k~ 38 (190)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNYEERG-------MKVLVFKP 38 (190)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHcC-------CeEEEEec
Confidence 5677899999999999988776554 46777755
No 186
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.25 E-value=0.057 Score=65.36 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=44.5
Q ss_pred hhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcC
Q 043990 581 HFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634 (911)
Q Consensus 581 ~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiG 634 (911)
.|++| ..|+.|-.|+-+|.|=+..=+++=+-+.-|-..-.|-+||..|+-
T Consensus 479 SFd~p----lRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 479 SFDEP----LRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred ccCCc----ceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 56653 469999999999999999999999999999999999999999973
No 187
>PRK10536 hypothetical protein; Provisional
Probab=95.19 E-value=0.056 Score=58.04 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
..|...+.++.+ ..-+++--+.|+|||+.++++....+..+ ...+++|+-|.
T Consensus 62 ~~Q~~~l~al~~----------~~lV~i~G~aGTGKT~La~a~a~~~l~~~-----~~~kIiI~RP~ 113 (262)
T PRK10536 62 EAQAHYLKAIES----------KQLIFATGEAGCGKTWISAAKAAEALIHK-----DVDRIIVTRPV 113 (262)
T ss_pred HHHHHHHHHHhc----------CCeEEEECCCCCCHHHHHHHHHHHHHhcC-----CeeEEEEeCCC
Confidence 778888887743 12446778999999999999998655333 24566666555
No 188
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=94.76 E-value=0.08 Score=62.33 Aligned_cols=83 Identities=23% Similarity=0.445 Sum_probs=64.9
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh-hHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL-VSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL-l~qW~~ 260 (911)
..|-.-|..||+..+.+ .=.||--++|+|||+++.++++++.+++ ..|+||++|+.+ |.|-..
T Consensus 409 pkLN~SQ~~AV~~VL~r----------plsLIQGPPGTGKTvtsa~IVyhl~~~~------~~~VLvcApSNiAVDqLae 472 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQR----------PLSLIQGPPGTGKTVTSATIVYHLARQH------AGPVLVCAPSNIAVDQLAE 472 (935)
T ss_pred hhhchHHHHHHHHHHcC----------CceeeecCCCCCceehhHHHHHHHHHhc------CCceEEEcccchhHHHHHH
Confidence 35777899999998642 2238888999999999999999998885 578999999865 677777
Q ss_pred HHHHHhCCCeEEEEecCCcchhh
Q 043990 261 EIKKWVGGRVQLIALCESTRDDV 283 (911)
Q Consensus 261 Ei~k~~~~~~~v~~~~~~~r~~~ 283 (911)
.|.+- +++|+.+....|+..
T Consensus 473 KIh~t---gLKVvRl~aksRE~~ 492 (935)
T KOG1802|consen 473 KIHKT---GLKVVRLCAKSREDI 492 (935)
T ss_pred HHHhc---CceEeeeehhhhhhc
Confidence 77654 477777776666544
No 189
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.32 E-value=0.46 Score=54.76 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
.+|-|.+ +|.+.-.. + +..+-|+|-.+.|+|||+.-++++..+....++ ..+-||-|..
T Consensus 17 iYPEQ~~---YM~elKrs-L--DakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSR 75 (755)
T KOG1131|consen 17 IYPEQYE---YMRELKRS-L--DAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSR 75 (755)
T ss_pred cCHHHHH---HHHHHHHh-h--ccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecC
Confidence 5688875 66654322 2 234567999999999999999999887665543 3356788875
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.77 E-value=0.52 Score=57.13 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV 255 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl 255 (911)
+.|++++..++. .+-+||.-..|+|||.+...++..+........ ..++++++|+.-.
T Consensus 148 ~~Qk~A~~~al~----------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~--~~~I~l~APTGkA 205 (586)
T TIGR01447 148 NWQKVAVALALK----------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQG--KLRIALAAPTGKA 205 (586)
T ss_pred HHHHHHHHHHhh----------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccC--CCcEEEECCcHHH
Confidence 789999988764 234678888999999998888887766542211 1369999999554
No 191
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=93.60 E-value=0.0089 Score=75.89 Aligned_cols=74 Identities=30% Similarity=0.469 Sum_probs=52.3
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCch--HHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLG--KTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLG--KTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
...+.+||.....-.... ...+..++++.|+| ||+.+..+.......+ ...+.++++|..+..+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 148 (866)
T COG0553 82 RFILIPHQLDIALEVLNE--------LALRVLIADEVGLGDLKTIEAGAILKELLLRG-----EIKRVLILVPKTLRAQW 148 (866)
T ss_pred ccccCcchhhhhhhhhhh--------hhhchhhcccccccccccccccccchHhhhhh-----hhccceeccchHHHHHH
Confidence 344557777655443321 11236889999999 8998887776655444 46788999999999999
Q ss_pred HHHHHHHhC
Q 043990 259 EAEIKKWVG 267 (911)
Q Consensus 259 ~~Ei~k~~~ 267 (911)
..+...++.
T Consensus 149 ~~e~~~~~~ 157 (866)
T COG0553 149 VVELLEKFN 157 (866)
T ss_pred HHHhhhhcc
Confidence 999887744
No 192
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.56 E-value=0.53 Score=58.60 Aligned_cols=66 Identities=20% Similarity=0.159 Sum_probs=47.1
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEA 260 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~ 260 (911)
...|-+-|++++..+.. .+-+||.-..|+|||.++-+++..+...+ ...++++++|+.-......
T Consensus 321 ~~~l~~~Q~~Ai~~~~~----------~~~~iitGgpGTGKTt~l~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ----------HKVVILTGGPGTGKTTITRAIIELAEELG-----GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCCHHHHHHHHHHHh----------CCeEEEECCCCCCHHHHHHHHHHHHHHcC-----CCceEEEEeCchHHHHHHH
Confidence 35688999999998743 23467888899999988777776654433 1257889999977665444
Q ss_pred H
Q 043990 261 E 261 (911)
Q Consensus 261 E 261 (911)
|
T Consensus 386 e 386 (720)
T TIGR01448 386 E 386 (720)
T ss_pred H
Confidence 3
No 193
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.55 E-value=4 Score=49.08 Aligned_cols=95 Identities=13% Similarity=0.203 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCH-----HHHHHHHHhhcCC---CCCceEEE
Q 043990 522 HVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSI-----SKRQKLVNHFNDP---SKNEFVFL 593 (911)
Q Consensus 522 ~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~-----~~R~~iv~~Fn~~---~~~~~v~L 593 (911)
.-|-.++..+...-..-||+|...-+.|..+.+.+...|+- .+|.|.-+. .--..+++.|... ..+ .+|
T Consensus 615 ~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~G--aiL 691 (821)
T KOG1133|consen 615 KDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRG--AIL 691 (821)
T ss_pred HHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCC--eEE
Confidence 34445555554433467888888888999998888876652 222221110 0124456666421 112 355
Q ss_pred Eec--CCcccccCCCC--CCEEEEeCCCCC
Q 043990 594 LSS--KAGGCGLNLIG--GNRLVLFDPDWN 619 (911)
Q Consensus 594 lSt--kagg~GLNL~~--An~VIl~Dp~WN 619 (911)
++. .-.++|||+.. +..||+.-.|+-
T Consensus 692 laVVGGKlSEGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 692 LAVVGGKLSEGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred EEEeccccccccccccccccEEEEeecCCC
Confidence 543 44679999974 678888877763
No 194
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.55 E-value=0.24 Score=60.41 Aligned_cols=87 Identities=15% Similarity=0.280 Sum_probs=47.6
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHc-------CCCEEEEeCCCCHHHHHHHHHhhc----CCCC-CceEEEEecCCccccc
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRER-------RYPYLRLDGTTSISKRQKLVNHFN----DPSK-NEFVFLLSSKAGGCGL 603 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~~-------gi~~~~LdGsts~~~R~~iv~~Fn----~~~~-~~~v~LlStkagg~GL 603 (911)
...+|||...-.+++.+...+... +.+-+.+--. +..+=.+++.+|- ++.. ...-+.++-...++||
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 345888877777777775554432 2222222111 2222333444443 3322 2224566667789999
Q ss_pred CCC--CCCEEEEeCCCCCcchH
Q 043990 604 NLI--GGNRLVLFDPDWNPAND 623 (911)
Q Consensus 604 NL~--~An~VIl~Dp~WNPa~~ 623 (911)
+.- .+..||..-.|+=|..+
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D 661 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMD 661 (945)
T ss_pred CccccCCceeEEecCCCCCCCC
Confidence 996 46677888777655433
No 195
>PRK08116 hypothetical protein; Validated
Probab=93.35 E-value=0.38 Score=52.50 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=31.5
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
.|.+|.-++|+|||..+.+++..+..++ .+++++.-..++..+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~-------~~v~~~~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKG-------VPVIFVNFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEEEHHHHHHHH
Confidence 4789999999999999999998887654 245555544444433
No 196
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.31 E-value=0.76 Score=57.08 Aligned_cols=65 Identities=22% Similarity=0.185 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV 255 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl 255 (911)
-||-|.+-...+.+.+.+... ....-+++=..||+|||+.-+..+....... .++++|-+.+..+
T Consensus 26 ~R~~Q~~M~~~V~~al~~~~~-~~~~~lviEAgTGtGKTlaYLlPai~~A~~~------~k~vVIST~T~~L 90 (697)
T PRK11747 26 PRAGQRQMIAEVAKTLAGEYL-KDGRILVIEAGTGVGKTLSYLLAGIPIARAE------KKKLVISTATVAL 90 (697)
T ss_pred cCHHHHHHHHHHHHHHhcccc-cccceEEEECCCCcchhHHHHHHHHHHHHHc------CCeEEEEcCCHHH
Confidence 468899988887775532000 0012345566999999998766554433321 2467777776444
No 197
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.08 E-value=0.35 Score=58.76 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhH
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVS 256 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~ 256 (911)
-+.|++|+.-... .+-+||.-..|+|||.++..++..+...... ...++++++|+.-..
T Consensus 154 ~d~Qk~Av~~a~~----------~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~---~~~~i~l~APTgkAA 212 (615)
T PRK10875 154 VDWQKVAAAVALT----------RRISVISGGPGTGKTTTVAKLLAALIQLADG---ERCRIRLAAPTGKAA 212 (615)
T ss_pred CHHHHHHHHHHhc----------CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCC---CCcEEEEECCcHHHH
Confidence 3899999987653 2346888899999999988888777654211 124789999986543
No 198
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.83 E-value=0.56 Score=52.69 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.|.++..++.++......+. ....+.+|.-++|+|||..+.+++..++..+
T Consensus 161 ~~~~~~~~~~~~~~f~~~f~--~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENFD--KNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 44666666665554333222 2347889999999999999999999888765
No 199
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.12 Score=63.57 Aligned_cols=10 Identities=10% Similarity=-0.027 Sum_probs=6.9
Q ss_pred HHHHHHHHHH
Q 043990 188 QREGVQFMFE 197 (911)
Q Consensus 188 Q~egV~~m~~ 197 (911)
|..+.+||-+
T Consensus 2069 lndafR~mgr 2078 (3015)
T KOG0943|consen 2069 LNDAFREMGR 2078 (3015)
T ss_pred HHHHHHHHHh
Confidence 7777788733
No 200
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=92.49 E-value=1.6 Score=50.78 Aligned_cols=128 Identities=10% Similarity=0.135 Sum_probs=94.2
Q ss_pred chHHHHHHH-HHHHHh-hcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 518 SGKMHVLAR-LLGHLR-QRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 518 S~Kl~~L~~-LL~~l~-~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
..++....+ +|..+. .....++|||...-=..-.|..+|+..++.|+.++--++.++-.++-..|..|... ++|.|
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEE
Confidence 456665554 777776 44567899987766666678899999999999999999999999999999987544 55555
Q ss_pred cCC-cccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCC----cccEEEEEEEeC
Q 043990 596 SKA-GGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQ----KKRVFIYRFLST 647 (911)
Q Consensus 596 tka-gg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQ----kk~V~VyrLi~~ 647 (911)
-.+ -=.=..+.|+.+||+|.||-+|.-|...+.-...-.+ ...+.|.-|.++
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 443 1234567899999999999999999988876655443 233444444443
No 201
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.37 E-value=0.17 Score=59.19 Aligned_cols=109 Identities=14% Similarity=0.282 Sum_probs=58.2
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC-chhhHHHHHHHH-----HHhCCCeEEEEecCCcchhhhccCc
Q 043990 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP-TSLVSNWEAEIK-----KWVGGRVQLIALCESTRDDVVSGID 288 (911)
Q Consensus 215 DemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P-~sLl~qW~~Ei~-----k~~~~~~~v~~~~~~~r~~~~~~~~ 288 (911)
+.+|+|||+++.++|+++..+| .+..|..|- ++++..-..-+. |++-. ..+-+.+ ..- .+..+.
T Consensus 4 matgsgkt~~ma~lil~~y~kg------yr~flffvnq~nilekt~~nftd~~s~kylf~--e~i~~~d-~~i-~ikkvn 73 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKG------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFS--ENININD-ENI-EIKKVN 73 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhc------hhhEEEEecchhHHHHHHhhcccchhhhHhhh--hhhhcCC-cee-eeeeec
Confidence 4599999999999999999988 345555554 566644333221 22110 1111111 111 112233
Q ss_pred ccCCCCCCccEEEEehHHHHhhccc-------cccCCCCc-EEEEcCccccCC
Q 043990 289 SFTDPCSSLQVLIVSYETFRMHSSK-------FSCSESCD-LLICDEAHRLKN 333 (911)
Q Consensus 289 ~~~~~~~~~~VvI~Sye~l~~~~~~-------~~~~~~~~-lVIlDEAH~lKN 333 (911)
.+........|+.+|.+.+-.+... +.....-. +.+-|||||+..
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 3333334567889998877433221 11111122 467899999944
No 202
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.96 E-value=0.76 Score=43.61 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=20.9
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll 233 (911)
.....++.-++|.|||..+-.++..+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 345678899999999987777776654
No 203
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.67 E-value=0.15 Score=48.49 Aligned_cols=57 Identities=19% Similarity=0.136 Sum_probs=34.0
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh-hHHHHHHHHHHhC
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL-VSNWEAEIKKWVG 267 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL-l~qW~~Ei~k~~~ 267 (911)
-+++.-+.|+|||..+-.++..+........ ...-+.|-||..- ...+..++...++
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~ 63 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALG 63 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4577889999999999988887754310000 1223455566544 4566666666554
No 204
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.58 E-value=0.2 Score=47.09 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=31.0
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHH
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEA 260 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~ 260 (911)
...+|.-++|+|||..+..++..+...+ ..++++.+......|..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLD 47 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHH
Confidence 3567888999999999988887653321 24777777755544433
No 205
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=91.46 E-value=0.14 Score=57.85 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=7.2
Q ss_pred cCCCCCCCCCcc
Q 043990 146 NFTLPPGVDPLV 157 (911)
Q Consensus 146 ~~~~p~~~~~~~ 157 (911)
...+|..++|..
T Consensus 222 ~~~iPQDIDPSF 233 (458)
T PF10446_consen 222 HIPIPQDIDPSF 233 (458)
T ss_pred CCCCCCCCCCCC
Confidence 356677666643
No 206
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.42 E-value=0.5 Score=51.31 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=23.2
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.....||.-++|+|||..|-++...+...+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 345678999999999999888877665443
No 207
>PRK06526 transposase; Provisional
Probab=91.30 E-value=0.58 Score=50.64 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=25.4
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
...+.+|.-++|+|||..+.++...+...|
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 346789999999999999999988877665
No 208
>PF13245 AAA_19: Part of AAA domain
Probab=91.22 E-value=0.61 Score=40.59 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=32.8
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVS 256 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~ 256 (911)
-+++--..|+|||.+++..+..+..... .+ .+++||++|+.-..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~--~~-~~~vlv~a~t~~aa 55 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARA--DP-GKRVLVLAPTRAAA 55 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhc--CC-CCeEEEECCCHHHH
Confidence 3456888999999999999988875321 12 46899999995443
No 209
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=91.19 E-value=0.77 Score=56.30 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=52.5
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh-hHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL-VSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL-l~qW~~ 260 (911)
..|-+.|+++|.+++. ...-.|+--.+|+|||.++++++..+...+ .++||++|+.. +.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~---------~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g-------~~VLv~a~sn~Avd~l~e 219 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---------SKDLFLIHGPPGTGKTRTLVELIRQLVKRG-------LRVLVTAPSNIAVDNLLE 219 (637)
T ss_pred CCCCHHHHHHHHHHhc---------CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC-------CCEEEEcCcHHHHHHHHH
Confidence 4577999999998753 113457888899999999999998887765 27999999854 577777
Q ss_pred HHHHH
Q 043990 261 EIKKW 265 (911)
Q Consensus 261 Ei~k~ 265 (911)
.+.+.
T Consensus 220 ~l~~~ 224 (637)
T TIGR00376 220 RLALC 224 (637)
T ss_pred HHHhC
Confidence 77653
No 210
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.03 E-value=1.4 Score=54.77 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceE-EEcCCCchHHHHHHHHHHHHHh
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCI-LADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~I-LADemGLGKTlqaIali~~ll~ 234 (911)
=|.-|.+.|...+... +...+.+++| |.-.+|+|||+++-.++..+..
T Consensus 759 hREeEIeeLasfL~pa---IkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESG---IKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHH---HhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567777776555422 2223444564 8999999999999998876643
No 211
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=90.36 E-value=1.7 Score=42.67 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=36.6
Q ss_pred EEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCC--CCEEEEeCCCC
Q 043990 563 YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIG--GNRLVLFDPDW 618 (911)
Q Consensus 563 ~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~--An~VIl~Dp~W 618 (911)
.+.+-| ....+..++++.|.....+ .+|+++....+|+|+++ +..||+.-.|+
T Consensus 25 ~i~~e~-~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQG-EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeC-CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344444 3334678899999864322 47777777999999986 56788887654
No 212
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=90.27 E-value=0.62 Score=58.86 Aligned_cols=104 Identities=23% Similarity=0.377 Sum_probs=71.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-----HHHHHHHHHHhCCCeEEEEecCCcchh
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-----SNWEAEIKKWVGGRVQLIALCESTRDD 282 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-----~qW~~Ei~k~~~~~~~v~~~~~~~r~~ 282 (911)
....+++...|+|||+.|=-.+.. . -...+++-++|...+ .-|...|.+-+| ..+...+|....+
T Consensus 1159 nd~v~vga~~gsgkt~~ae~a~l~---~-----~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G--~~~~~l~ge~s~~ 1228 (1674)
T KOG0951|consen 1159 NDNVLVGAPNGSGKTACAELALLR---P-----DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG--LRIVKLTGETSLD 1228 (1674)
T ss_pred cceEEEecCCCCchhHHHHHHhcC---C-----ccceEEEEecchHHHHHHHHHHHHHhhccccC--ceEEecCCccccc
Confidence 457899999999999876544432 1 136789999998554 678888887744 4444445443322
Q ss_pred hhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCC
Q 043990 283 VVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 283 ~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN 333 (911)
..- ....+|+|.|++.+.... .....++.|+||.|.+..
T Consensus 1229 lkl--------~~~~~vii~tpe~~d~lq----~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1229 LKL--------LQKGQVIISTPEQWDLLQ----SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred hHH--------hhhcceEEechhHHHHHh----hhhhcceEeeehhhhhcc
Confidence 111 134579999999886542 245688999999999864
No 213
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=90.10 E-value=1.2 Score=43.77 Aligned_cols=54 Identities=13% Similarity=0.345 Sum_probs=34.0
Q ss_pred EEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCC--cccccCCCC--CCEEEEeCCCC
Q 043990 564 LRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKA--GGCGLNLIG--GNRLVLFDPDW 618 (911)
Q Consensus 564 ~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStka--gg~GLNL~~--An~VIl~Dp~W 618 (911)
+.+.+..+ .+..+++++|+......-.+|+++.. .++|+|+++ +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44445432 35578899998632210135555544 899999986 57888887664
No 214
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.31 E-value=1.4 Score=50.38 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCC---CCceEEEEeCc
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKP---MVKKAIIVTPT 252 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p---~~~~~LIV~P~ 252 (911)
|.++++.+.+.+.. ..-.+..|+.-+.|.|||..+.+++..++++.+.+.. .....|.+|+.
T Consensus 24 q~~~~~~L~~~~~~---~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~ 88 (365)
T PRK07471 24 HAAAEAALLDAYRS---GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD 88 (365)
T ss_pred hHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC
Confidence 66666666554321 2234567899999999999999999999987642211 01235556665
No 215
>PRK08181 transposase; Validated
Probab=89.03 E-value=2 Score=46.91 Aligned_cols=45 Identities=22% Similarity=0.099 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.-|..++.+.-+ +. ....+.+|.-++|+|||..+.++...+..+|
T Consensus 90 ~~~~~~L~~~~~----~~--~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g 134 (269)
T PRK08181 90 KAQVMAIAAGDS----WL--AKGANLLLFGPPGGGKSHLAAAIGLALIENG 134 (269)
T ss_pred HHHHHHHHHHHH----HH--hcCceEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence 456666644321 11 2346789999999999999999988877665
No 216
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=88.98 E-value=1.5 Score=49.27 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCC
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGF 237 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~ 237 (911)
++|+|....+.+... ..-.+..++.-+.|.|||..|.+++..+++..+
T Consensus 4 ~yPWl~~~~~~~~~~------~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~ 51 (328)
T PRK05707 4 IYPWQQSLWQQLAGR------GRHPHAYLLHGPAGIGKRALAERLAAALLCEAP 51 (328)
T ss_pred CCCCcHHHHHHHHHC------CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 578888888877652 223456778999999999999999999988653
No 217
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=88.84 E-value=1.8 Score=50.83 Aligned_cols=95 Identities=19% Similarity=0.128 Sum_probs=58.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGI 287 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~ 287 (911)
.++.+|.-++|+|||..+-++...+....+ ..+++.|.+..++......+..-.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-----~~~v~yv~~~~f~~~~~~~l~~~~--------------------- 194 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFS-----DLKVSYMSGDEFARKAVDILQKTH--------------------- 194 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCC-----CCeEEEEEHHHHHHHHHHHHHHhh---------------------
Confidence 467789999999999888777766554321 235666666555555544443200
Q ss_pred cccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhccCCHHHHHHhhhhc
Q 043990 288 DSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFT 353 (911)
Q Consensus 288 ~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l~El~sLl~fl 353 (911)
-.++.++.. ....++||+||+|.+.+.... .++||.+++.+
T Consensus 195 --------------~~~~~~~~~------~~~~dvLiIDDiq~l~~k~~~-----~e~lf~l~N~~ 235 (450)
T PRK14087 195 --------------KEIEQFKNE------ICQNDVLIIDDVQFLSYKEKT-----NEIFFTIFNNF 235 (450)
T ss_pred --------------hHHHHHHHH------hccCCEEEEeccccccCCHHH-----HHHHHHHHHHH
Confidence 001122111 135789999999999653321 56788887765
No 218
>PRK06921 hypothetical protein; Provisional
Probab=87.99 E-value=1.7 Score=47.48 Aligned_cols=29 Identities=24% Similarity=0.154 Sum_probs=24.7
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
...+.+|.-++|+|||..+.+++..+..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 35678999999999999999998887765
No 219
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=87.61 E-value=0.63 Score=57.90 Aligned_cols=110 Identities=23% Similarity=0.340 Sum_probs=75.0
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhh----HHHHHHHHHHhCCCeEEEEecCCcchhh
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLV----SNWEAEIKKWVGGRVQLIALCESTRDDV 283 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl----~qW~~Ei~k~~~~~~~v~~~~~~~r~~~ 283 (911)
....+.+.+|.|||+.+-..++..+...+ ..++.+|+|. .|+ ..|...+.. + +++++...+....+.
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-----~~kvvyIap~kalvker~~Dw~~r~~~--~-g~k~ie~tgd~~pd~ 1015 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYYP-----GSKVVYIAPDKALVKERSDDWSKRDEL--P-GIKVIELTGDVTPDV 1015 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccCC-----CccEEEEcCCchhhcccccchhhhccc--C-CceeEeccCccCCCh
Confidence 35678899999999998888777665542 3689999996 444 667665532 3 467777777666542
Q ss_pred hccCcccCCCCCCccEEEEehHHHHhhccccc---cCCCCcEEEEcCccccCCc
Q 043990 284 VSGIDSFTDPCSSLQVLIVSYETFRMHSSKFS---CSESCDLLICDEAHRLKND 334 (911)
Q Consensus 284 ~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~---~~~~~~lVIlDEAH~lKN~ 334 (911)
... ...+++|||++..-.....+. ....+.++|+||.|.++..
T Consensus 1016 ~~v--------~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1016 KAV--------READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred hhe--------ecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 221 235799999998743333211 1346778999999998664
No 220
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=86.99 E-value=1.5 Score=49.69 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
|.+++..+...+.. ...++..++.-+.|+|||..+..++..+++.
T Consensus 28 h~~a~~~L~~a~~~---grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYRE---GKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHc---CCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 45556666654321 2334577889999999999999999888774
No 221
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.98 E-value=2.9 Score=53.10 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHH
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll 233 (911)
|..-|..|++.+. ....++.||.-+.|.|||..+=.++..+.
T Consensus 192 r~~ei~~~i~~l~----r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILL----RRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHh----cCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 4444667765332 23456889999999999998877776653
No 222
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=85.97 E-value=1.1 Score=46.15 Aligned_cols=88 Identities=18% Similarity=0.102 Sum_probs=49.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccC
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFT 291 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~ 291 (911)
++.-.|++|||-.-|-.+..+...+ .+++|..|..=..--..++..+ .|.
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g-------~~v~vfkp~iD~R~~~~~V~Sr----------~G~------------- 57 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAG-------MKVLVFKPAIDTRYGVGKVSSR----------IGL------------- 57 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcC-------CeEEEEecccccccccceeeec----------cCC-------------
Confidence 4567899999987776666665544 5788888864211111111111 111
Q ss_pred CCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccC
Q 043990 292 DPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLK 332 (911)
Q Consensus 292 ~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lK 332 (911)
...-++|-+-..+.............++|++||||-+.
T Consensus 58 ---~~~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~ 95 (201)
T COG1435 58 ---SSEAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFD 95 (201)
T ss_pred ---cccceecCChHHHHHHHHhcccCCCcCEEEEehhHhCC
Confidence 11124554544444444433223337899999999874
No 223
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.90 E-value=4.1 Score=46.23 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
|..|.+.+...+... +.....+.++|.-+.|+|||..+-.++..+..
T Consensus 20 Re~e~~~l~~~l~~~---~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPI---LRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHH---HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567777766555421 11223456788999999999998888877644
No 224
>PRK14974 cell division protein FtsY; Provisional
Probab=85.87 E-value=3.4 Score=46.61 Aligned_cols=108 Identities=22% Similarity=0.353 Sum_probs=57.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc----hhhHHHHHHHHHHhCCCeEEEEecCCcchhhhcc
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT----SLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSG 286 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~----sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~ 286 (911)
.++.-..|.|||-++..++..+...+ .++++++.- ..+.||..-... ++ +.++.......
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g-------~~V~li~~Dt~R~~a~eqL~~~a~~-lg--v~v~~~~~g~d------ 206 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNG-------FSVVIAAGDTFRAGAIEQLEEHAER-LG--VKVIKHKYGAD------ 206 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC-------CeEEEecCCcCcHHHHHHHHHHHHH-cC--CceecccCCCC------
Confidence 45678999999998888887765543 356666543 344566443332 22 22221110000
Q ss_pred CcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhccCCHHHHHHhhhhcCCC
Q 043990 287 IDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPG 356 (911)
Q Consensus 287 ~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l~El~sLl~fl~P~ 356 (911)
...+ .|+.+... ....+++||+|.|+++.+... -+.+|-.+...+.|.
T Consensus 207 ---------p~~v---~~~ai~~~-----~~~~~DvVLIDTaGr~~~~~~-----lm~eL~~i~~~~~pd 254 (336)
T PRK14974 207 ---------PAAV---AYDAIEHA-----KARGIDVVLIDTAGRMHTDAN-----LMDELKKIVRVTKPD 254 (336)
T ss_pred ---------HHHH---HHHHHHHH-----HhCCCCEEEEECCCccCCcHH-----HHHHHHHHHHhhCCc
Confidence 0001 12222211 123578999999999864432 256666665555553
No 225
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=85.75 E-value=3.1 Score=48.65 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=22.7
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.-.+++-.+|.|||-++..++..+...+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g 123 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKG 123 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 3457788999999999999988776554
No 226
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.70 E-value=3.9 Score=43.64 Aligned_cols=28 Identities=18% Similarity=-0.040 Sum_probs=21.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
....+|.-+.|+|||-.+.++...+...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3567899999999998887777665443
No 227
>PRK08727 hypothetical protein; Validated
Probab=85.51 E-value=3.5 Score=43.99 Aligned_cols=28 Identities=29% Similarity=0.232 Sum_probs=22.3
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
...+|.-+.|+|||..+.++...+..++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999988888877765544
No 228
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.42 E-value=1.4 Score=49.49 Aligned_cols=112 Identities=23% Similarity=0.296 Sum_probs=65.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCC-CeEEEEecCCcchhhhccCcc
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGIDS 289 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~ 289 (911)
.+++-=-|.|||-+|.-+++++.++| . ++.+||--.--.---+.++.|.-. ++.++.-+....
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG------~-K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~d--------- 167 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKG------Y-KVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEAD--------- 167 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcC------C-ceeEEeecccccchHHHHHHHhHhhCCeeEecccccc---------
Confidence 34455679999999999999988877 3 344555432222222333333221 233322111110
Q ss_pred cCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhccCCHHHHHHhhhhcCCCC
Q 043990 290 FTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGI 357 (911)
Q Consensus 290 ~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l~El~sLl~fl~P~~ 357 (911)
.|.|++- -..+|. ..+|++||+|=+-|.+-..+. .+|+...-+++.|..
T Consensus 168 --------pv~ia~e-----gv~~fK-ke~fdvIIvDTSGRh~qe~sL-----feEM~~v~~ai~Pd~ 216 (483)
T KOG0780|consen 168 --------PVKIASE-----GVDRFK-KENFDVIIVDTSGRHKQEASL-----FEEMKQVSKAIKPDE 216 (483)
T ss_pred --------hHHHHHH-----HHHHHH-hcCCcEEEEeCCCchhhhHHH-----HHHHHHHHhhcCCCe
Confidence 1222211 122333 578999999999998877665 688888888998874
No 229
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=85.37 E-value=0.68 Score=46.91 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=23.9
Q ss_pred CccEEEEehHHHHhhcc--ccc-cCCCCcEEEEcCccccCC
Q 043990 296 SLQVLIVSYETFRMHSS--KFS-CSESCDLLICDEAHRLKN 333 (911)
Q Consensus 296 ~~~VvI~Sye~l~~~~~--~~~-~~~~~~lVIlDEAH~lKN 333 (911)
..+|||++|..+-.... .+. ....-.+||+||||+|-+
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 35799999998732211 111 123456899999999854
No 230
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.34 E-value=1.7 Score=51.05 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=22.6
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
+..|+.-+.|.|||-.|..++..+.+.
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 346999999999999999998887554
No 231
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=85.22 E-value=5.2 Score=50.12 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=43.2
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVS 256 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~ 256 (911)
..|-+-|+++|..++. ..+-++|-...|+|||...-+++..+...| .++++++|+....
T Consensus 351 ~~Ls~~Q~~Av~~i~~---------s~~~~il~G~aGTGKTtll~~i~~~~~~~g-------~~V~~~ApTg~Aa 409 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---------SGDIAVVVGRAGTGKSTMLKAAREAWEAAG-------YRVIGAALSGKAA 409 (744)
T ss_pred CCCCHHHHHHHHHHhc---------CCCEEEEEecCCCCHHHHHHHHHHHHHhCC-------CeEEEEeCcHHHH
Confidence 4688999999988752 112457888899999988777765554443 4688999996653
No 232
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=85.01 E-value=4.9 Score=44.29 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceE-EEEeCc-hhhHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKA-IIVTPT-SLVSNWEAEIK 263 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~-LIV~P~-sLl~qW~~Ei~ 263 (911)
|.=.+++..|-+.+.. -......+.+|.-+.|-|||..+=-+....... .+......|+ +|-+|+ .-.......|-
T Consensus 40 ~~A~~~L~~L~~Ll~~-P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 40 PRAKEALDRLEELLEY-PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred HHHHHHHHHHHHHHhC-CcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 4555666666553321 123345678899999999998544333322111 1111112243 444554 44455555555
Q ss_pred HHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhccCCH
Q 043990 264 KWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDL 343 (911)
Q Consensus 264 k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l 343 (911)
..++-.+. ...+ -..+......+.......+|||||.|++-...... -
T Consensus 118 ~~lgaP~~-----~~~~-----------------------~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~----q 165 (302)
T PF05621_consen 118 EALGAPYR-----PRDR-----------------------VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRK----Q 165 (302)
T ss_pred HHhCcccC-----CCCC-----------------------HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHH----H
Confidence 54432111 0000 01111111112234578899999999975544322 3
Q ss_pred HHHHHhhhhc
Q 043990 344 EEFFAMVNFT 353 (911)
Q Consensus 344 ~El~sLl~fl 353 (911)
.++.+++.++
T Consensus 166 r~~Ln~LK~L 175 (302)
T PF05621_consen 166 REFLNALKFL 175 (302)
T ss_pred HHHHHHHHHH
Confidence 4555555555
No 233
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.64 E-value=3.2 Score=43.50 Aligned_cols=29 Identities=21% Similarity=-0.012 Sum_probs=22.9
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.....+|.-+.|+|||..+.++.......
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~ 65 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER 65 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34567888999999999998888766543
No 234
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=84.57 E-value=2.8 Score=46.96 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=41.1
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
..+||+|....+.+...+.. ..-.+..++..+.|+||+..|.+++..+++.+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~---~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDA---GRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHc---CCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 35789999998888775432 22345678899999999999999999998875
No 235
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=84.44 E-value=1.9 Score=54.34 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.+..||.-..|+|||..+..+...|++.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 3556899999999999999999888764
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=84.39 E-value=3.3 Score=44.87 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=40.5
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIK 263 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~ 263 (911)
...|.+|.-.+|.|||..++|+...+...| .+++++.=+.++.+++..+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g-------~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAG-------ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEEHHHHHHHHHHHHh
Confidence 567889999999999999999999998544 46788877777777766654
No 237
>CHL00181 cbbX CbbX; Provisional
Probab=84.34 E-value=2.8 Score=46.30 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=22.7
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
..+|.-++|+|||..|-++...+...|
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 368899999999999999988776655
No 238
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=84.32 E-value=2.5 Score=51.68 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.1
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
+..|+.-+.|.|||..+-.++..+.+.
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 445889999999999999999888774
No 239
>PLN03025 replication factor C subunit; Provisional
Probab=84.25 E-value=3.7 Score=45.96 Aligned_cols=28 Identities=36% Similarity=0.389 Sum_probs=23.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
....||.-+.|+|||-.+.+++..+...
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3457999999999999999988877543
No 240
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=84.05 E-value=1.6 Score=48.92 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHH-HHhcCCCCCCCCceEEEEeCc
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT-LLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~-ll~~g~~~~p~~~~~LIV~P~ 252 (911)
--+|+-|+.-+++ ....=+.|.-.-|+|||+-|+|.... .+.++ ..++++|-=|.
T Consensus 230 n~eQ~~ALdlLld--------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-----~y~KiiVtRp~ 285 (436)
T COG1875 230 NAEQRVALDLLLD--------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-----RYRKIIVTRPT 285 (436)
T ss_pred cHHHHHHHHHhcC--------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-----hhceEEEecCC
Confidence 3588888887754 33344567777999999988876543 33333 34455655554
No 241
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=83.96 E-value=2.5 Score=51.42 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=25.8
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGF 237 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~ 237 (911)
.+..||.-..|+|||..+..++..+.+.++
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~ 75 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEGP 75 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCCc
Confidence 457889999999999999999999877653
No 242
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=83.84 E-value=2.4 Score=46.55 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHHHHHH
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWEAEIK 263 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~Ei~ 263 (911)
-+-|+++|.+. .+-.++-...|+|||.+.+.-+..++..+. -...++|+|+++... ..-...+.
T Consensus 2 ~~eQ~~~i~~~------------~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~---~~~~~Il~lTft~~aa~e~~~ri~ 66 (315)
T PF00580_consen 2 TDEQRRIIRST------------EGPLLVNAGAGSGKTTTLLERIAYLLYEGG---VPPERILVLTFTNAAAQEMRERIR 66 (315)
T ss_dssp -HHHHHHHHS-------------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS---STGGGEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHhCC------------CCCEEEEeCCCCCchHHHHHHHHHhhcccc---CChHHheecccCHHHHHHHHHHHH
Confidence 46788888762 123345556999999999999888887653 124679999998553 33444555
Q ss_pred HHh
Q 043990 264 KWV 266 (911)
Q Consensus 264 k~~ 266 (911)
..+
T Consensus 67 ~~l 69 (315)
T PF00580_consen 67 ELL 69 (315)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 243
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=83.51 E-value=5.7 Score=45.51 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=32.6
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
-.+|+-++|.|||..++.++..+...+ .++|.|.-..-..|.....
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g-------~~VlYvs~EEs~~qi~~Ra 129 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRG-------GKVLYVSGEESPEQIKLRA 129 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC-------CeEEEEECCcCHHHHHHHH
Confidence 347789999999999998887765543 4688887654455554433
No 244
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.47 E-value=7.8 Score=44.55 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=58.5
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC-c---hhhHHHHHHHHHHhCC-CeEEEEecCCcchhhh
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP-T---SLVSNWEAEIKKWVGG-RVQLIALCESTRDDVV 284 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P-~---sLl~qW~~Ei~k~~~~-~~~v~~~~~~~r~~~~ 284 (911)
-+.|.-..|.|||-.+..+...+..++ .++++|.- + ..+.||.. |... .+.+
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~G-------kkVglI~aDt~RiaAvEQLk~----yae~lgipv------------ 299 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKK-------KTVGFITTDHSRIGTVQQLQD----YVKTIGFEV------------ 299 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC-------CcEEEEecCCcchHHHHHHHH----HhhhcCCcE------------
Confidence 345778899999999988888776544 34555554 2 24556653 3211 1111
Q ss_pred ccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhccCCHHHHHHhhhhcCC
Q 043990 285 SGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNP 355 (911)
Q Consensus 285 ~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l~El~sLl~fl~P 355 (911)
+++.+...+......+.....+|+||||-+=+.-+.. +.+.++..++....|
T Consensus 300 --------------~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~-----~lm~EL~~~lk~~~P 351 (436)
T PRK11889 300 --------------IAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRAS-----ETVEEMIETMGQVEP 351 (436)
T ss_pred --------------EecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCH-----HHHHHHHHHHhhcCC
Confidence 1122344444333333222358999999887654321 236777777665544
No 245
>PTZ00293 thymidine kinase; Provisional
Probab=83.23 E-value=1.1 Score=46.83 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=26.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS 253 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s 253 (911)
++.-.||+|||...|-.+..+...+ ++++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~ag-------~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYSE-------KKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcC-------CceEEEEecc
Confidence 4567899999988887776665443 5788888864
No 246
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=82.72 E-value=3.3 Score=49.34 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.7
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.+..||.-+.|+|||-.|-.++..+.+..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 46789999999999999999998886653
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=82.70 E-value=4.2 Score=43.77 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKK 264 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k 264 (911)
+.|+.++..+.+...++. .+..|.+|.-..|+|||..+.+++..+...+ .+++++. +..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~--~~~~~~~l~G~~GtGKThLa~aia~~l~~~g-------~~v~~it----~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFD--GNIASFIFSGKPGTGKNHLAAAICNELLLRG-------KSVLIIT----VADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhc--cCCceEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEE----HHHHHHHHHH
Confidence 447777776665332221 2235889999999999999999998887654 2455552 4556655543
No 248
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=82.58 E-value=4.4 Score=47.72 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=33.2
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
.+..+|.-+.|+|||..+-++...+...++ ..+++.|....++..+...+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~-----~~~v~yi~~~~~~~~~~~~~ 197 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNP-----NAKVVYVTSEKFTNDFVNAL 197 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCC-----CCeEEEEEHHHHHHHHHHHH
Confidence 356789999999999999888888766531 23455555445544443333
No 249
>PRK11054 helD DNA helicase IV; Provisional
Probab=82.54 E-value=4 Score=50.57 Aligned_cols=70 Identities=20% Similarity=0.155 Sum_probs=50.0
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAE 261 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~E 261 (911)
..|-+-|+++|..- .+.+++-...|+|||.+.++-+.+++..+.. ...++|++|.+.-..++.++
T Consensus 195 ~~L~~~Q~~av~~~------------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~---~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 195 SPLNPSQARAVVNG------------EDSLLVLAGAGSGKTSVLVARAGWLLARGQA---QPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred CCCCHHHHHHHhCC------------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC---CHHHeEEEeccHHHHHHHHH
Confidence 45788899888532 1234555569999999999999888876521 23589999999877766554
Q ss_pred -HHHHh
Q 043990 262 -IKKWV 266 (911)
Q Consensus 262 -i~k~~ 266 (911)
|.+.+
T Consensus 260 RL~~~l 265 (684)
T PRK11054 260 RIRERL 265 (684)
T ss_pred HHHHhc
Confidence 55544
No 250
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.53 E-value=2.9 Score=50.58 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.8
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
+..|+.-+.|+|||-.+..++..+.+.
T Consensus 36 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 345889999999999999999888764
No 251
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=82.24 E-value=4.4 Score=47.57 Aligned_cols=29 Identities=28% Similarity=0.173 Sum_probs=24.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.++.+|.-+.|+|||..+-++...+...+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~ 169 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESG 169 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 46788999999999999988888876543
No 252
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=81.79 E-value=4.7 Score=45.28 Aligned_cols=51 Identities=27% Similarity=0.329 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCC
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGF 237 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~ 237 (911)
++|+|...-+.+...+.. ..-.++.++.-+.|.||+..|.+++..+++..+
T Consensus 3 ~yPW~~~~~~~l~~~~~~---~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~ 53 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQ---GLGHHALLFKADSGLGTEQLIRALAQWLMCQTP 53 (325)
T ss_pred CCcchHHHHHHHHHHHHc---CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 457777666666554321 223467778999999999999999999988653
No 253
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.67 E-value=4.2 Score=48.59 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=22.8
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
+..|+.-+.|.|||-.|-.++..+.+.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 445889999999999999999888664
No 254
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.59 E-value=5.3 Score=45.88 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=24.0
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
....++|.-+.|+|||..+-.++..+...+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 345679999999999999988887765543
No 255
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=81.41 E-value=3.2 Score=42.40 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=28.4
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P 251 (911)
...|.+|.-++|.|||..|.+++..+...| .+++.+.-
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-------~~v~f~~~ 83 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG-------YSVLFITA 83 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT---------EEEEEH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC-------cceeEeec
Confidence 356889999999999999999999888765 24566653
No 256
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.32 E-value=4.2 Score=45.53 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=23.1
Q ss_pred ccCCCceEEEcCCCchHHHHHHHHHHH
Q 043990 205 AAGIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 205 ~~~~~G~ILADemGLGKTlqaIali~~ 231 (911)
....+|++|.-++|+|||+.|=|++..
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 467889999999999999988877754
No 257
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=81.27 E-value=4 Score=51.10 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=24.4
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
...++.||.-+.|.|||..+-+++..+...
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345788999999999999988888776543
No 258
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.16 E-value=3.6 Score=50.09 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.+..|+.-+.|.|||-.|.+++..+.+.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4566999999999999999888887653
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=81.13 E-value=6.6 Score=38.16 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=24.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
+|.-+.|+|||..+..++.....++ .+++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~-------~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKG-------GKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcC-------CEEEEEECC
Confidence 4566799999999999888775532 356666554
No 260
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.94 E-value=5.2 Score=45.67 Aligned_cols=44 Identities=27% Similarity=0.269 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
|...+..+...+.. ..-.+..|+.-+.|+|||..+-+++..+.+
T Consensus 21 q~~~~~~l~~~~~~---~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTAISNGLSL---GRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHHHHHHHHc---CCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 55555555443321 122345689999999999999998887764
No 261
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=80.62 E-value=13 Score=42.91 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=58.2
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch--hhHHHHHHHHHHhCC-CeEEEEecCCcchhhhcc
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS--LVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSG 286 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s--Ll~qW~~Ei~k~~~~-~~~v~~~~~~~r~~~~~~ 286 (911)
-.++.-.+|.|||-++.-++..+...+.. ..+++.+|+=-. .-..|+ +..|... .+.+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~---~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv-------------- 236 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDD---KSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV-------------- 236 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhcc---CCCeEEEEeccCccHHHHHH--HHHHhhcCCcce--------------
Confidence 45678899999999988887766533210 123555555432 222333 4445431 1111
Q ss_pred CcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhccCCHHHHHHhhhhcCC
Q 043990 287 IDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNP 355 (911)
Q Consensus 287 ~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l~El~sLl~fl~P 355 (911)
.++-++..+...... ...+++||||++.+..... ..+.++..++..+.+
T Consensus 237 ------------~~~~~~~~l~~~L~~---~~~~DlVLIDTaGr~~~~~-----~~l~el~~~l~~~~~ 285 (388)
T PRK12723 237 ------------KAIESFKDLKEEITQ---SKDFDLVLVDTIGKSPKDF-----MKLAEMKELLNACGR 285 (388)
T ss_pred ------------EeeCcHHHHHHHHHH---hCCCCEEEEcCCCCCccCH-----HHHHHHHHHHHhcCC
Confidence 122234444333222 2468999999999875311 125677776665543
No 262
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.38 E-value=2.5 Score=51.29 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=24.4
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.+..|+.-+.|+|||..+..++..+.+.+
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC~~ 66 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNCTG 66 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 34568899999999999999999887754
No 263
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=80.23 E-value=5.5 Score=49.19 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
|...++.+...+.+ ..-.+..||.-..|+|||..+..+...+.+.
T Consensus 21 Qe~Vv~~L~~aL~~---gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDG---GRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 44555544443221 1224566889999999999999998887654
No 264
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.81 E-value=6.2 Score=45.64 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.+..|+.-+.|+|||..|.+++..+.+..
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~ 66 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 35678899999999999999998887653
No 265
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.61 E-value=14 Score=44.15 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=69.2
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc-CCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-RYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLL 594 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~-gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~Ll 594 (911)
..|||..+...++..... .+.++||.+........+.+.|+.. |..+..++|.++..+|.+...+...+... +++
T Consensus 6 TGsGKT~v~l~~i~~~l~-~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVV 81 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLA-LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVI 81 (505)
T ss_pred CCCCHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEE
Confidence 459999988888877665 5789999999998888777777654 78899999999999998888777665444 455
Q ss_pred ecCCcccccCCCCCCEEEEeC
Q 043990 595 SSKAGGCGLNLIGGNRLVLFD 615 (911)
Q Consensus 595 Stkagg~GLNL~~An~VIl~D 615 (911)
.|..+- =+-+.....||+-+
T Consensus 82 GTrsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 82 GTRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred CChHHH-cCcccCCCEEEEEC
Confidence 554321 12345556666554
No 266
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=79.39 E-value=8 Score=40.13 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=25.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
.+|.-.+|.|||-++.-+++.+..++ +++.+||--
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~-------~~v~lis~D 38 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKG-------KKVALISAD 38 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---------EEEEEES
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcc-------ccceeecCC
Confidence 36778899999999999988887653 345555543
No 267
>CHL00095 clpC Clp protease ATP binding subunit
Probab=79.16 E-value=5.7 Score=50.47 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=23.8
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
...++.||.-+.|.|||..+-+++..+..
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34568899999999999999888776643
No 268
>PRK05580 primosome assembly protein PriA; Validated
Probab=79.10 E-value=17 Score=45.17 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=70.4
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc-CCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-RYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~-gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
.|||..+...++..... .+.++||.+.....+..+.+.|+.. |.....++|+++..+|.+...+...+... ++++
T Consensus 172 GSGKT~v~l~~i~~~l~-~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVg 247 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLA-QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIG 247 (679)
T ss_pred CChHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEe
Confidence 48999888777766554 4789999999999888888877764 78899999999999998888888765544 5566
Q ss_pred cCCcccccCCCCCCEEEEeCC
Q 043990 596 SKAGGCGLNLIGGNRLVLFDP 616 (911)
Q Consensus 596 tkagg~GLNL~~An~VIl~Dp 616 (911)
|..+- =+.+.....||+-+-
T Consensus 248 Trsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh-cccccCCCEEEEECC
Confidence 54321 244556666766653
No 269
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=79.09 E-value=4.3 Score=43.50 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=29.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh------HHHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV------SNWEAEIKK 264 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl------~qW~~Ei~k 264 (911)
..+.-+.|+|||+.+=+++..+ .. ...++|+.|+..+ .-|..++..
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~-~~-------d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASL-NE-------DQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhc-CC-------CceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 4567899999999888555443 21 2345577776443 556666543
No 270
>PRK11823 DNA repair protein RadA; Provisional
Probab=79.03 E-value=10 Score=44.67 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=34.2
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKK 264 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k 264 (911)
-.+|+-++|.|||..++.++.....++ .++|.|.-..-..|+.....+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g-------~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAG-------GKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEEccccHHHHHHHHHH
Confidence 346889999999999999988776433 468888866555555544433
No 271
>PRK10865 protein disaggregation chaperone; Provisional
Probab=78.92 E-value=4.3 Score=51.74 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHH
Q 043990 191 GVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 191 gV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll 233 (911)
-|..|++.+. ....++.||.-+.|.|||..+-+++..+.
T Consensus 186 ei~~~i~iL~----r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 186 EIRRTIQVLQ----RRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHHh----cCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 3667766433 23456789999999999999888877653
No 272
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=78.90 E-value=7.9 Score=46.94 Aligned_cols=93 Identities=20% Similarity=0.252 Sum_probs=55.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGI 287 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~ 287 (911)
.+..+|.-..|+|||..+.++...+..... ..+++.+.-..++..+...+..-
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~-----g~~V~Yitaeef~~el~~al~~~---------------------- 366 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYP-----GTRVRYVSSEEFTNEFINSIRDG---------------------- 366 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCC-----CCeEEEeeHHHHHHHHHHHHHhc----------------------
Confidence 355788999999999988888777654321 13455555445554444333210
Q ss_pred cccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhccCCHHHHHHhhhhc
Q 043990 288 DSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFT 353 (911)
Q Consensus 288 ~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l~El~sLl~fl 353 (911)
.++.|+.. + ..+++||||+.|.+.+.... -.+||.+++.+
T Consensus 367 ---------------~~~~f~~~---y---~~~DLLlIDDIq~l~gke~t-----qeeLF~l~N~l 406 (617)
T PRK14086 367 ---------------KGDSFRRR---Y---REMDILLVDDIQFLEDKEST-----QEEFFHTFNTL 406 (617)
T ss_pred ---------------cHHHHHHH---h---hcCCEEEEehhccccCCHHH-----HHHHHHHHHHH
Confidence 11222211 1 34799999999999765431 35677766654
No 273
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=78.72 E-value=5 Score=51.15 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHH
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll 233 (911)
|..-|..+.+.+. ....+..||.-+.|.|||..+-+++..+.
T Consensus 178 r~~ei~~~~~~l~----r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 178 RDEEIRRTIQVLS----RRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred cHHHHHHHHHHHh----cCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3334777776432 23446778999999999999888776653
No 274
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.57 E-value=4.9 Score=50.50 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=21.9
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
..|+.-+.|.|||..+-.++..+.+.
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhccCc
Confidence 34899999999999999998887653
No 275
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=78.43 E-value=5.5 Score=46.18 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=23.2
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.++.+|.-+.|+|||..+.++...+...
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3566899999999999998888877655
No 276
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=78.15 E-value=6.9 Score=43.82 Aligned_cols=52 Identities=21% Similarity=0.109 Sum_probs=39.0
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCC
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGF 237 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~ 237 (911)
.++|+|...-+.+...+. ...-.+..++.-+.|+||+..|..++..+++...
T Consensus 3 ~~yPWl~~~~~~l~~~~~---~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~ 54 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLD---AGRIPGALLLQSDEGLGVESLVELFSRALLCQNY 54 (319)
T ss_pred cCcccHHHHHHHHHHHHH---cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 356888777777765432 1233567788999999999999999999988763
No 277
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=78.12 E-value=1.5 Score=44.71 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=25.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
++.-+|++|||...|..+..+...+ ++++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~-------~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAG-------KKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--------EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCC-------CeEEEEEec
Confidence 3456799999999888887765543 578888875
No 278
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=78.11 E-value=5.3 Score=40.41 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=35.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHH
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~ 265 (911)
+++-++|+|||..++.++...+..| .++++|.......+..+.+..+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g-------~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARG-------EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCC-------CcEEEEECCCCHHHHHHHHHHc
Confidence 6788899999999999998877654 4688998876666665555444
No 279
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=78.04 E-value=4.8 Score=45.41 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCC
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGF 237 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~ 237 (911)
+||+|...-+.+...+.. ..-.+.-+++-+.|.||+..|.+++..+++..+
T Consensus 3 ~yPWl~~~~~~l~~~~~~---~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~ 53 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQA---GRGHHALLIQALPGMGDDALIYALSRWLMCQQP 53 (334)
T ss_pred CCCCChHHHHHHHHHHHc---CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 567777777776654321 233567778999999999999999999988653
No 280
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=77.84 E-value=12 Score=46.43 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=66.2
Q ss_pred cchHHHHHHH-HHHHHhhcCCCeEEEEEcchHHHH----HHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceE
Q 043990 517 LSGKMHVLAR-LLGHLRQRTDDRIVLVSNYTQTLD----LFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFV 591 (911)
Q Consensus 517 ~S~Kl~~L~~-LL~~l~~~~~~KVIIFSq~~~~ld----~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v 591 (911)
.|||..+..- ++..+. .+.+++|.+.....+. .+.+++...|+++..++|+++.++|..++....++..+ +
T Consensus 292 GSGKT~va~~~il~~~~--~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~--I 367 (681)
T PRK10917 292 GSGKTVVAALAALAAIE--AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD--I 367 (681)
T ss_pred CCcHHHHHHHHHHHHHH--cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC--E
Confidence 4899775443 444443 4789999999886655 44555556689999999999999999999999876555 3
Q ss_pred EEEecCCcccccCCCCCCEEEEeC
Q 043990 592 FLLSSKAGGCGLNLIGGNRLVLFD 615 (911)
Q Consensus 592 ~LlStkagg~GLNL~~An~VIl~D 615 (911)
++.+.......+.+.....||+=+
T Consensus 368 vVgT~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 368 VIGTHALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred EEchHHHhcccchhcccceEEEec
Confidence 444434455566676766666533
No 281
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.65 E-value=9.1 Score=46.00 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.+..|+.-+.|.|||..|-.++..+.+.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3556899999999999999888887654
No 282
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.65 E-value=5.9 Score=48.15 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=23.8
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.+..|+.-+.|+|||..|..++..+.+.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 4567789999999999999999888654
No 283
>PRK08760 replicative DNA helicase; Provisional
Probab=77.62 E-value=2.8 Score=49.68 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=37.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~ 265 (911)
.|||-.+|.|||.-++.++....... ..+++++..---..+|...+...
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~------g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKS------KKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhc------CCceEEEeccCCHHHHHHHHHHh
Confidence 48899999999999999987765331 24688998877777887776554
No 284
>PHA02533 17 large terminase protein; Provisional
Probab=77.30 E-value=9.5 Score=45.85 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=36.1
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
.|+|+|++-+..|.. .+-.++.-.=..|||..+.++++.+..... ...+++++|+
T Consensus 59 ~L~p~Q~~i~~~~~~----------~R~~ii~~aRq~GKStl~a~~al~~a~~~~-----~~~v~i~A~~ 113 (534)
T PHA02533 59 QMRDYQKDMLKIMHK----------NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-----DKNVGILAHK 113 (534)
T ss_pred CCcHHHHHHHHHHhc----------CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-----CCEEEEEeCC
Confidence 577999998877632 112255555678999988776654443321 2378999995
No 285
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.26 E-value=8.4 Score=46.00 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=23.0
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
-.|+.-+.|+|||..+.+++..+.+.+
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 348899999999999999988887654
No 286
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=76.98 E-value=7.6 Score=42.70 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
-+|...|+-+...+.+ ......++.-+.|+|||-++.++...+..
T Consensus 39 ~gQe~vV~~L~~a~~~----~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLR----RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred cchHHHHHHHHHHHhh----cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 4688888887765433 23345578889999999999999988754
No 287
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=76.57 E-value=3.5 Score=52.33 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHH
Q 043990 222 TLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWE 259 (911)
Q Consensus 222 TlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~ 259 (911)
|+..+.++..++... -.+..||+|+.|+ .+|-
T Consensus 542 ~Lvllklv~~lFPTS------D~~HpVVTPalllm~~~L 574 (840)
T PF04147_consen 542 DLVLLKLVGTLFPTS------DFRHPVVTPALLLMSEYL 574 (840)
T ss_pred HHHHHHHHHHhcCcc------cccCcchhHHHHHHHHHH
Confidence 666666665554332 2246688887554 4443
No 288
>PRK08939 primosomal protein DnaI; Reviewed
Probab=76.47 E-value=8 Score=43.08 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=26.1
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
...|.+|.-++|.|||..+.|++..+..+|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g 184 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG 184 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 356888999999999999999999988665
No 289
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=76.07 E-value=9.9 Score=46.05 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.+..|+.-+.|+|||..+-.++..+.+..
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~ 66 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLN 66 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 44567799999999999999988876654
No 290
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=75.65 E-value=22 Score=43.49 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=24.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
++.-+=|.|||..+..++..+.... ..+++|.+|.
T Consensus 191 V~taPRqrGKS~iVgi~l~~La~f~------Gi~IlvTAH~ 225 (752)
T PHA03333 191 AATVPRRCGKTTIMAIILAAMISFL------EIDIVVQAQR 225 (752)
T ss_pred EEEeccCCCcHHHHHHHHHHHHHhc------CCeEEEECCC
Confidence 5566789999988776655554321 2379999995
No 291
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=75.40 E-value=6.8 Score=48.45 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.+..|+.-+.|.|||..|-.++..+.+..
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~ 68 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSH 68 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccc
Confidence 45668999999999999999988876643
No 292
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=75.36 E-value=4.8 Score=47.95 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=23.5
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll 233 (911)
...+|++|.-++|+|||..+-+++..+.
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 3467999999999999999888877663
No 293
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.09 E-value=7.3 Score=46.85 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.+..|+.-+.|+|||..+-.++..+.+.
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456899999999999999999887654
No 294
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.00 E-value=5.7 Score=48.46 Aligned_cols=47 Identities=30% Similarity=0.340 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCC
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGF 237 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~ 237 (911)
|...+..+...+.. ....+..|+.-..|.|||-.+..++..+.+.+.
T Consensus 21 Qe~vv~~L~~~l~~---~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~ 67 (618)
T PRK14951 21 QEHVVQALTNALTQ---QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGP 67 (618)
T ss_pred cHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCc
Confidence 55555555443221 122345588999999999999999998887653
No 295
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.82 E-value=8 Score=47.03 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.+..|+.-+.|.|||..+..++..+.+.
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 3456889999999999999998887654
No 296
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=74.53 E-value=14 Score=47.51 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=39.8
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVS 256 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~ 256 (911)
.|-+-|+++|..+.. ...-++|--..|+|||.+.-+++..+...| .+++.++|+....
T Consensus 346 ~Ls~eQr~Av~~il~---------s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G-------~~V~~~ApTGkAA 403 (988)
T PRK13889 346 VLSGEQADALAHVTD---------GRDLGVVVGYAGTGKSAMLGVAREAWEAAG-------YEVRGAALSGIAA 403 (988)
T ss_pred CCCHHHHHHHHHHhc---------CCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-------CeEEEecCcHHHH
Confidence 588999999998753 112357778899999987554443333333 4688999987543
No 297
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=74.43 E-value=7.1 Score=41.46 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=28.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
.+|+-.+|.|||..++.++.....+. ..++++++.-
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~------g~~vly~s~E 51 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQ------GKPVLFFSLE 51 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC------CCceEEEeCC
Confidence 47899999999999999998887662 2467888843
No 298
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=74.19 E-value=6.1 Score=48.50 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=23.5
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.++.||.-..|+|||..+..++..+.+.
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4567999999999999999988887654
No 299
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=74.12 E-value=11 Score=40.83 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=32.2
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
=++|+-.+|.|||..++.++..+..+. ..+++++.-..-..++...+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~------g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQH------GVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhc------CceEEEEEcccCHHHHHHHH
Confidence 457899999999999999888776541 24677777644344444433
No 300
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.79 E-value=9.9 Score=46.60 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
|...+..+...+.. ....+..|+.-+.|+|||..+.+++..+.+..
T Consensus 21 q~~i~~~L~~~l~~---~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~ 66 (620)
T PRK14948 21 QEAIATTLKNALIS---NRIAPAYLFTGPRGTGKTSSARILAKSLNCLN 66 (620)
T ss_pred hHHHHHHHHHHHHc---CCCCceEEEECCCCCChHHHHHHHHHHhcCCC
Confidence 55555555443321 12235678999999999999999999887654
No 301
>PRK12377 putative replication protein; Provisional
Probab=73.69 E-value=11 Score=40.81 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 187 HQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 187 hQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
-|..++..+......+. .+..+.+|.-++|+|||..+.+++..+..++ .+++++.-..++...
T Consensus 82 ~~~~a~~~a~~~a~~~~--~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g-------~~v~~i~~~~l~~~l 144 (248)
T PRK12377 82 GQRYALSQAKSIADELM--TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKG-------RSVIVVTVPDVMSRL 144 (248)
T ss_pred hHHHHHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHHHHHHcC-------CCeEEEEHHHHHHHH
Confidence 35555554443322222 2346788999999999999999999887665 234444434444443
No 302
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.21 E-value=8.8 Score=45.43 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=22.2
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
++.|+.-+.|+|||..|-+++..+.+.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 456899999999999998888776543
No 303
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=72.77 E-value=2.9 Score=43.15 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=15.1
Q ss_pred EEcCCCchHHHHHHHH-HHHHHhcC
Q 043990 213 LADDMGLGKTLQSIAL-LYTLLCQG 236 (911)
Q Consensus 213 LADemGLGKTlqaIal-i~~ll~~g 236 (911)
+.--+|+|||+-|+.. +...++.|
T Consensus 5 ~~G~pGsGKS~~av~~~i~~~l~~g 29 (193)
T PF05707_consen 5 ITGKPGSGKSYYAVSYVIIPALKKG 29 (193)
T ss_dssp EE--TTSSHHHHHHHHHHH-GGGS-
T ss_pred EEcCCCCcHhHHHHHHHHHHHHhCC
Confidence 3445999999999888 65555443
No 304
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.71 E-value=9.9 Score=46.48 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
|...+..+...+. ...-.+..|+.-+.|.|||..|..+...+.+..
T Consensus 21 Qe~i~~~L~~~i~---~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~ 66 (620)
T PRK14954 21 QEHITHTIQNSLR---MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (620)
T ss_pred cHHHHHHHHHHHH---cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 5555555554332 122345678999999999999999998887654
No 305
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.59 E-value=9.6 Score=45.22 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=23.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.+..|+.-+.|.|||-.|..++..+.+.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 4578999999999999998888777664
No 306
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=72.33 E-value=2.7 Score=53.32 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=7.7
Q ss_pred ccCCCCCCCCCCC
Q 043990 86 CRKPFKPPCSNGY 98 (911)
Q Consensus 86 ~~~~f~~~~~~~~ 98 (911)
..-||..|+|..+
T Consensus 416 ~elPftf~~P~s~ 428 (840)
T PF04147_consen 416 SELPFTFPCPSSH 428 (840)
T ss_pred cCCCceecCCCCH
Confidence 3446777766654
No 307
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=72.06 E-value=9.3 Score=43.69 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
-|.-|.+.+...+.. .+.......+++.-.+|+|||.++-.++..+....
T Consensus 21 ~Re~ei~~l~~~l~~---~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 21 HREEEINQLASFLAP---ALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred ccHHHHHHHHHHHHH---HhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 456677777665443 23334445589999999999999988888776543
No 308
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=71.45 E-value=9.9 Score=43.93 Aligned_cols=29 Identities=21% Similarity=0.443 Sum_probs=24.7
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.++.|+.-+.|.|||..+.+++..+++..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~ 64 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTD 64 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 45678999999999999999998887654
No 309
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=71.24 E-value=16 Score=45.70 Aligned_cols=70 Identities=23% Similarity=0.132 Sum_probs=48.7
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch-hhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS-LVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s-Ll~qW~~E 261 (911)
.|-|-|+++|..- .+-+++....|+|||.+.+.-+.+++..+. . ....+|+|+-+. ....-.+.
T Consensus 4 ~Ln~~Q~~av~~~------------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~--v-~p~~IL~lTFTnkAA~em~~R 68 (715)
T TIGR01075 4 GLNDKQREAVAAP------------PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN--A-SPHSIMAVTFTNKAAAEMRHR 68 (715)
T ss_pred ccCHHHHHHHcCC------------CCCEEEEecCCCCHHHHHHHHHHHHHHcCC--C-CHHHeEeeeccHHHHHHHHHH
Confidence 4679999998632 234567778999999999999999887531 1 135799999974 44445555
Q ss_pred HHHHhC
Q 043990 262 IKKWVG 267 (911)
Q Consensus 262 i~k~~~ 267 (911)
+.+.++
T Consensus 69 l~~~~~ 74 (715)
T TIGR01075 69 IGALLG 74 (715)
T ss_pred HHHHhc
Confidence 555543
No 310
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=70.68 E-value=13 Score=37.18 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCC
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGF 237 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~ 237 (911)
|.+.+..+...+.. ..-.+..|+.-+.|.||+-.+.+++..++....
T Consensus 2 q~~~~~~L~~~~~~---~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 2 QEEIIELLKNLIKS---GRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp -HHHHHHHHHHHHC---TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cHHHHHHHHHHHHc---CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 55666666554321 122345688999999999999999999877653
No 311
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.62 E-value=42 Score=38.56 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhhcccc------ccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc----hhhHHH
Q 043990 189 REGVQFMFECVSGLLN------AAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT----SLVSNW 258 (911)
Q Consensus 189 ~egV~~m~~~~~g~l~------~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~----sLl~qW 258 (911)
.+...|+.+.+.+++. ..+..-.+++-..|.|||-++..++..+..++ .++.+|+-- .-+.||
T Consensus 181 ~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g-------~~V~lItaDtyR~gAveQL 253 (407)
T PRK12726 181 DDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQN-------RTVGFITTDTFRSGAVEQF 253 (407)
T ss_pred HHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEEeCCccCccHHHHH
Confidence 3455666665544331 11223345678899999999988887766554 345555542 236777
Q ss_pred HHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchh
Q 043990 259 EAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 259 ~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
..-.... + +.+. +..++..+......+.....+++||||=+=+.-+..
T Consensus 254 k~yae~l-g--vpv~--------------------------~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~--- 301 (407)
T PRK12726 254 QGYADKL-D--VELI--------------------------VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAE--- 301 (407)
T ss_pred HHHhhcC-C--CCEE--------------------------ecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCH---
Confidence 5533221 1 1111 112233332222222212458999999887653221
Q ss_pred ccCCHHHHHHhhhhcCCC
Q 043990 339 NRNDLEEFFAMVNFTNPG 356 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~ 356 (911)
+.+.|+-.+...+.|.
T Consensus 302 --~~l~EL~~l~~~~~p~ 317 (407)
T PRK12726 302 --ESVSEISAYTDVVHPD 317 (407)
T ss_pred --HHHHHHHHHhhccCCc
Confidence 2366666666655553
No 312
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=70.41 E-value=13 Score=39.98 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~l 232 (911)
+.+++++..+...+ ..+.+-++|.-+.|+|||..+-.++..+
T Consensus 26 ~~~~~~~~~l~~~~-----~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 26 KGHKRAMAYLEYGL-----SQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHHHHHHHHHH-----hcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 45666777664321 1122235788999999998777665443
No 313
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=70.30 E-value=15 Score=44.77 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=56.7
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH----HHHHhCCCeEEEEecCCcchh
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE----IKKWVGGRVQLIALCESTRDD 282 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E----i~k~~~~~~~v~~~~~~~r~~ 282 (911)
.+-.+..-+==-|||.....+|+.++..- ....+++++|. .....--+| +++|++... +-.+.+ . .
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~-----~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~-v~~vkG-e--~ 324 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATF-----RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASR-VDHVKG-E--T 324 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhC-----CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhh-eeeecC-c--E
Confidence 33445555566799998887777666432 13478999996 333333344 455655422 111122 1 1
Q ss_pred hhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCc
Q 043990 283 VVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 283 ~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~ 334 (911)
+. + .+.. ..+..+...|- + .....+...+++||+||||-++..
T Consensus 325 I~--i-~f~n-G~kstI~FaSa---r--ntNsiRGqtfDLLIVDEAqFIk~~ 367 (738)
T PHA03368 325 IS--F-SFPD-GSRSTIVFASS---H--NTNGIRGQDFNLLFVDEANFIRPD 367 (738)
T ss_pred EE--E-EecC-CCccEEEEEec---c--CCCCccCCcccEEEEechhhCCHH
Confidence 10 0 1111 01123444322 1 111123568999999999999763
No 314
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=70.17 E-value=18 Score=39.77 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=21.0
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
-.+++-.+|.|||-++..++..+...
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34567899999999999988877654
No 315
>PRK06321 replicative DNA helicase; Provisional
Probab=70.09 E-value=7.2 Score=46.14 Aligned_cols=47 Identities=21% Similarity=0.138 Sum_probs=33.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIK 263 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~ 263 (911)
.|||--+|.|||.-++.++....... ..+++++..----.++...+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~------g~~v~~fSLEMs~~ql~~Rll 275 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQN------RLPVGIFSLEMTVDQLIHRII 275 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhc------CCeEEEEeccCCHHHHHHHHH
Confidence 48899999999999999877654321 246888877655556655443
No 316
>PRK09165 replicative DNA helicase; Provisional
Probab=70.00 E-value=9.7 Score=45.44 Aligned_cols=123 Identities=13% Similarity=0.093 Sum_probs=62.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCC-CC-------CCCCceEEEEeCchhhHHHHHHHHHHhCC-CeEEEEecCCcch
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGF-DG-------KPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRD 281 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~-~~-------~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~-~~~v~~~~~~~r~ 281 (911)
+|||-.+|+|||.-++.+++....... .. .....++|++..---..++...+.....+ ....+. .+.-..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~-~~~l~~ 298 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIR-RGKISE 298 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHh-cCCCCH
Confidence 588999999999999988877654310 00 01135788887765556665554433221 111110 111111
Q ss_pred hhhccCcccCCCCCCccEEEE-----ehHHHHhhccccccCCCCcEEEEcCccccCCc
Q 043990 282 DVVSGIDSFTDPCSSLQVLIV-----SYETFRMHSSKFSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 282 ~~~~~~~~~~~~~~~~~VvI~-----Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~ 334 (911)
..+..+..........++.|- |.+.++.....+......++||||=-|.+...
T Consensus 299 ~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~~ 356 (497)
T PRK09165 299 EDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRGS 356 (497)
T ss_pred HHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccCC
Confidence 000000000000112234442 34555444444443456899999998888654
No 317
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=69.98 E-value=6.5 Score=43.57 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=25.7
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFD 238 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~ 238 (911)
.+-.+++.+.|.|||..+.++...+....+.
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~ 54 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPT 54 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcc
Confidence 3346889999999999999999999876643
No 318
>PRK06893 DNA replication initiation factor; Validated
Probab=69.76 E-value=15 Score=39.04 Aligned_cols=27 Identities=15% Similarity=-0.049 Sum_probs=21.7
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
..+|.-+.|+|||..+.++...+..++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 357899999999998888887766554
No 319
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=69.65 E-value=38 Score=37.08 Aligned_cols=105 Identities=18% Similarity=0.269 Sum_probs=56.9
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC-c---hhhHHHHHHHHHHhCCCeEEEEecCCcchhhhc
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP-T---SLVSNWEAEIKKWVGGRVQLIALCESTRDDVVS 285 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P-~---sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~ 285 (911)
-..+.-..|+|||..+..++..+..++ .++.+|.- . ..+.||...... .+ +.+..
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~~~-------~~v~~i~~D~~ri~~~~ql~~~~~~-~~--~~~~~----------- 135 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGKK-------KTVGFITTDHSRIGTVQQLQDYVKT-IG--FEVIA----------- 135 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEecCCCCHHHHHHHHHHhhh-cC--ceEEe-----------
Confidence 456677899999998877776664432 24555544 2 356677643322 11 11111
Q ss_pred cCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhccCCHHHHHHhhhhcCC
Q 043990 286 GIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNP 355 (911)
Q Consensus 286 ~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l~El~sLl~fl~P 355 (911)
..+...+......+.....+++||+|-+=+.-... +.+.|+..++....|
T Consensus 136 ---------------~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~-----~~l~el~~~~~~~~~ 185 (270)
T PRK06731 136 ---------------VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRAS-----ETVEEMIETMGQVEP 185 (270)
T ss_pred ---------------cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCH-----HHHHHHHHHHhhhCC
Confidence 11223332222222222468999999987753221 236777776665555
No 320
>PRK10867 signal recognition particle protein; Provisional
Probab=69.59 E-value=27 Score=40.82 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=22.1
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
-.+++-..|.|||-++.-++..+..+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 45678899999999999999888766
No 321
>PRK05642 DNA replication initiation factor; Validated
Probab=69.20 E-value=18 Score=38.52 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=19.8
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
+..+|.-+.|+|||.-+-++...+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~ 71 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ 71 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56688999999999877666655543
No 322
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=68.86 E-value=7.5 Score=46.32 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=52.4
Q ss_pred ccChHHHHHHHHHHHHhhhccc--cccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLL--NAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWE 259 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l--~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~ 259 (911)
.......++++.|.+..-..+. ......|.+|+-..|+|||+.|-++.... ..+++-|-...++..|.
T Consensus 248 ~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~~~~l~sk~v 317 (494)
T COG0464 248 EEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVKGSELLSKWV 317 (494)
T ss_pred HHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEeeCHHHhcccc
Confidence 3456778888888876543211 12345689999999999999988887632 23455555459999998
Q ss_pred HHHHHHh
Q 043990 260 AEIKKWV 266 (911)
Q Consensus 260 ~Ei~k~~ 266 (911)
-|..+-.
T Consensus 318 Gesek~i 324 (494)
T COG0464 318 GESEKNI 324 (494)
T ss_pred chHHHHH
Confidence 8888764
No 323
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=68.71 E-value=34 Score=34.19 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=20.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g 236 (911)
++.-..|.|||-.+..++..+...+
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC
Confidence 5667899999999999988876654
No 324
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=68.58 E-value=11 Score=46.78 Aligned_cols=69 Identities=23% Similarity=0.338 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWEAEI 262 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~Ei 262 (911)
|-|-|+++|.+- .+-+++....|+|||.+.+.-+.+++... +. ...++|+|+.+.-. ..-...+
T Consensus 3 Ln~~Q~~av~~~------------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~--~v-~p~~IL~lTFT~kAA~em~~Rl 67 (672)
T PRK10919 3 LNPGQQQAVEFV------------TGPCLVLAGAGSGKTRVITNKIAHLIRGC--GY-QARHIAAVTFTNKAAREMKERV 67 (672)
T ss_pred CCHHHHHHHhCC------------CCCEEEEecCCCCHHHHHHHHHHHHHHhc--CC-CHHHeeeEechHHHHHHHHHHH
Confidence 568899998642 23456667799999999999999988652 11 13579999997443 3344445
Q ss_pred HHHhC
Q 043990 263 KKWVG 267 (911)
Q Consensus 263 ~k~~~ 267 (911)
.+.++
T Consensus 68 ~~~l~ 72 (672)
T PRK10919 68 AQTLG 72 (672)
T ss_pred HHHhC
Confidence 44443
No 325
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=68.39 E-value=12 Score=43.90 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=31.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAE 261 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~E 261 (911)
.+|+-.+|.|||.-++.++....... ..+++++..---..+....
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~------g~~vl~~SlEm~~~~i~~R 242 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKE------GKPVAFFSLEMSAEQLAMR 242 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC------CCeEEEEeCcCCHHHHHHH
Confidence 48899999999999999988765431 1468888776444444333
No 326
>PRK05748 replicative DNA helicase; Provisional
Probab=68.29 E-value=6.9 Score=46.06 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=33.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
.|||-.+|.|||.-++.++....... ..+++++..---..+....+
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~------g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKT------DKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhC------CCeEEEEeCCCCHHHHHHHH
Confidence 58899999999999999988765331 24688887765555555554
No 327
>PRK05636 replicative DNA helicase; Provisional
Probab=68.02 E-value=7.2 Score=46.56 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=31.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
.|||-.+|.|||.-++.++.....+. ..+++++..---..++...+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~------g~~v~~fSlEMs~~ql~~R~ 313 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKH------NKASVIFSLEMSKSEIVMRL 313 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC------CCeEEEEEeeCCHHHHHHHH
Confidence 37899999999999998887654332 24678886654444444433
No 328
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=67.98 E-value=14 Score=44.46 Aligned_cols=98 Identities=21% Similarity=0.172 Sum_probs=53.9
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-----hhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCccc
Q 043990 216 DMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-----SLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290 (911)
Q Consensus 216 emGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-----sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~ 290 (911)
+=--|||...+.+|.-++..- ..-++..|+-- .+..--...+.+|+|.... ....+... .+
T Consensus 210 PRRHGKTWf~VpiIsllL~s~-----~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v-i~~k~~tI--------~~ 275 (668)
T PHA03372 210 PRRHGKTWFIIPIISFLLKNI-----IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT-IENKDNVI--------SI 275 (668)
T ss_pred cccCCceehHHHHHHHHHHhh-----cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce-eeecCcEE--------EE
Confidence 445699999998888777632 11256666664 2334455667789886432 21111110 11
Q ss_pred CCCCCCccEEEEe-hHHHHhhccccccCCCCcEEEEcCccccCC
Q 043990 291 TDPCSSLQVLIVS-YETFRMHSSKFSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 291 ~~~~~~~~VvI~S-ye~l~~~~~~~~~~~~~~lVIlDEAH~lKN 333 (911)
..+..+..++.+| +++= . .+...|++|++||||-++-
T Consensus 276 s~pg~Kst~~fasc~n~N-----s-iRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 276 DHRGAKSTALFASCYNTN-----S-IRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred ecCCCcceeeehhhccCc-----c-ccCCCCCEEEEehhhccCH
Confidence 1111222333333 3321 1 1256899999999999964
No 329
>PRK08506 replicative DNA helicase; Provisional
Probab=67.84 E-value=6.6 Score=46.54 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=34.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIK 263 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~ 263 (911)
.|||-.+|.|||.-++.++.....++ .+++++..---..++...+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g-------~~V~~fSlEMs~~ql~~Rll 240 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQD-------KGVAFFSLEMPAEQLMLRML 240 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcC-------CcEEEEeCcCCHHHHHHHHH
Confidence 48899999999999999988775443 46888877655555555443
No 330
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=67.82 E-value=4.7 Score=46.92 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=7.6
Q ss_pred cCceeeeeecccc
Q 043990 62 RGNLVVKRQSLLP 74 (911)
Q Consensus 62 ~~~~~~~r~~~~~ 74 (911)
.|.++..|.-.+.
T Consensus 291 ~~~tVFvRNL~fD 303 (678)
T KOG0127|consen 291 EGKTVFVRNLPFD 303 (678)
T ss_pred ccceEEEecCCcc
Confidence 4666666665443
No 331
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=67.77 E-value=33 Score=44.64 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=40.7
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVS 256 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~ 256 (911)
.|-+-|+++|..+.. ..+=++|--..|+|||.+.-++...+...| .+++.++|+.-..
T Consensus 381 ~Ls~eQ~~Av~~i~~---------~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G-------~~V~g~ApTgkAA 438 (1102)
T PRK13826 381 RLSDEQKTAIEHVAG---------PARIAAVVGRAGAGKTTMMKAAREAWEAAG-------YRVVGGALAGKAA 438 (1102)
T ss_pred CCCHHHHHHHHHHhc---------cCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-------CeEEEEcCcHHHH
Confidence 688999999987631 122346777899999988777665544443 4688889985443
No 332
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=67.29 E-value=14 Score=44.07 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=35.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
|+--..|+|||-+|+.=++.|+... .+.-..+++||+.|+.+..-....+
T Consensus 230 VVQGaAGSGKTtiALHRvAyLlY~~-R~~l~~k~vlvl~PN~vFleYis~V 279 (747)
T COG3973 230 VVQGAAGSGKTTIALHRVAYLLYGY-RGPLQAKPVLVLGPNRVFLEYISRV 279 (747)
T ss_pred EEecCCCCCchhHHHHHHHHHHhcc-ccccccCceEEEcCcHHHHHHHHHh
Confidence 5556789999999998777665433 2333456799999998876665544
No 333
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=67.16 E-value=22 Score=41.88 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=35.0
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKK 264 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k 264 (911)
=.+|+-++|.|||..++.++..+...+ .++|.|....-..|......+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g-------~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQ-------MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC-------CcEEEEECcCCHHHHHHHHHH
Confidence 347789999999999998887765543 368888876666666554443
No 334
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=66.97 E-value=12 Score=43.55 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=31.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH-hcCCCCCCCCceEEEEeCchhhHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLL-CQGFDGKPMVKKAIIVTPTSLVSNWEAE 261 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll-~~g~~~~p~~~~~LIV~P~sLl~qW~~E 261 (911)
.|||-.+|.|||.-++.++.... .++ .+++++..-.-..++...
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g-------~~v~~fSlEm~~~~l~~R 241 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREG-------KPVLFFSLEMSAEQLGER 241 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC-------CcEEEEECCCCHHHHHHH
Confidence 48899999999999999987765 332 468888855444444333
No 335
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.71 E-value=14 Score=45.07 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
|...+..+...+.. ....+..|+.-+.|+|||..+..++..+.+..
T Consensus 21 q~~~~~~L~~~i~~---~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~ 66 (585)
T PRK14950 21 QEHVVQTLRNAIAE---GRVAHAYLFTGPRGVGKTSTARILAKAVNCTT 66 (585)
T ss_pred CHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 55555555543321 11223348899999999999999988876543
No 336
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=66.34 E-value=34 Score=37.96 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=17.1
Q ss_pred ceEE-EcCCCchHHHHHHHHHHH
Q 043990 210 GCIL-ADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 210 G~IL-ADemGLGKTlqaIali~~ 231 (911)
+.+| .-+.|+|||..+-++...
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHH
Confidence 4455 899999999987777554
No 337
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=66.32 E-value=5.4 Score=46.09 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=39.4
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHh
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~ 266 (911)
..+|.+|+-+.|.|||..+.+++... .....=|.|.+|..-|.-|..|..
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff~iSassLtsK~~Ge~eK~v 234 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATES----------GATFFNISASSLTSKYVGESEKLV 234 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhh----------cceEeeccHHHhhhhccChHHHHH
Confidence 45688999999999999998887654 235667889999998877776653
No 338
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=66.02 E-value=30 Score=42.65 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=64.5
Q ss_pred cchHHHHH-HHHHHHHhhcCCCeEEEEEcchHHHHHHH----HHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceE
Q 043990 517 LSGKMHVL-ARLLGHLRQRTDDRIVLVSNYTQTLDLFA----QLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFV 591 (911)
Q Consensus 517 ~S~Kl~~L-~~LL~~l~~~~~~KVIIFSq~~~~ld~L~----~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v 591 (911)
.|||..+. .-++..+. .+.+++|.+.....+..+. +++...|+++..++|+++.++|..+.+...++..+ +
T Consensus 266 GSGKT~va~l~il~~~~--~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~--I 341 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIE--AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH--L 341 (630)
T ss_pred CCcHHHHHHHHHHHHHH--cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC--E
Confidence 48997654 34444443 4778999999887666554 44455589999999999999999999999876555 3
Q ss_pred EEEecCCcccccCCCCCCEEEEe
Q 043990 592 FLLSSKAGGCGLNLIGGNRLVLF 614 (911)
Q Consensus 592 ~LlStkagg~GLNL~~An~VIl~ 614 (911)
++.+....-..+.+.....||+=
T Consensus 342 iVgT~~ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 342 VVGTHALIQEKVEFKRLALVIID 364 (630)
T ss_pred EEecHHHHhccccccccceEEEe
Confidence 44444444455666666666553
No 339
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=65.57 E-value=3.3 Score=52.84 Aligned_cols=141 Identities=25% Similarity=0.322 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecC
Q 043990 519 GKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSK 597 (911)
Q Consensus 519 ~Kl~~L~~LL~~l~~-~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStk 597 (911)
.|+......+..++- ..-.|||+||++...++.++..+..+++.+.+-.+ +. +-...+..|.. .-+||+-+.
T Consensus 1203 ~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~-t~--d~~dc~~~fk~----I~clll~~~ 1275 (1394)
T KOG0298|consen 1203 TKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE-TE--DFDDCIICFKS----IDCLLLFVS 1275 (1394)
T ss_pred cCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC-Cc--chhhhhhhccc----ceEEEEEec
Confidence 455555554444443 23479999999999999999999999998765544 33 45567777865 458999999
Q ss_pred CcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 043990 598 AGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK 666 (911)
Q Consensus 598 agg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~ 666 (911)
.|+-||||+.|.||++.+|--||+.+.||+||+||+||+++++||||+..+||||.|+.....|.....
T Consensus 1276 ~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~ 1344 (1394)
T KOG0298|consen 1276 KGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLT 1344 (1394)
T ss_pred cCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999888876543
No 340
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=65.32 E-value=8.8 Score=41.19 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCceEEEE--eCchhh
Q 043990 218 GLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV--TPTSLV 255 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g~~~~p~~~~~LIV--~P~sLl 255 (911)
|.|||-.+.++.+.+.+.| +++|+| +|.+++
T Consensus 12 GvG~TTltAnLA~aL~~~G-------~~VlaID~dpqN~L 44 (243)
T PF06564_consen 12 GVGKTTLTANLAWALARLG-------ESVLAIDLDPQNLL 44 (243)
T ss_pred CCCHHHHHHHHHHHHHHCC-------CcEEEEeCCcHHHH
Confidence 7899999999999998876 345554 555444
No 341
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=65.05 E-value=7.1 Score=48.99 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=31.0
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
..+|++|.-+.|+|||..+-++...+ ..+.+.|-++.++..|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRGPEILSKW 527 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEehHHHhhcc
Confidence 45789999999999999888877653 2346666666666555
No 342
>PHA00012 I assembly protein
Probab=65.02 E-value=15 Score=41.07 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=19.5
Q ss_pred EcCCCchHHHHHHHHHHHHHhcC
Q 043990 214 ADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 214 ADemGLGKTlqaIali~~ll~~g 236 (911)
.--+|.|||+.|+..|...+.+|
T Consensus 7 TGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 7 TGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred ecCCCCCchHHHHHHHHHHHHcC
Confidence 33489999999999888888887
No 343
>PRK05595 replicative DNA helicase; Provisional
Probab=64.98 E-value=7.8 Score=45.53 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=33.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH-hcCCCCCCCCceEEEEeCchhhHHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLL-CQGFDGKPMVKKAIIVTPTSLVSNWEAEIK 263 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll-~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~ 263 (911)
+|+|-.+|.|||.-++.++.... .+| .+++++..---..++...+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g-------~~vl~fSlEms~~~l~~R~~ 250 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREG-------KSVAIFSLEMSKEQLAYKLL 250 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcC-------CcEEEEecCCCHHHHHHHHH
Confidence 47899999999999999987654 333 46888877655555555543
No 344
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=64.95 E-value=29 Score=38.28 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=20.6
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHH
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll 233 (911)
...+|.-+.|+|||..+-+++..+.
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3579999999999998888776654
No 345
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=64.28 E-value=12 Score=39.26 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=36.6
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhc-CCCCCCCCceEEEEeCchhhHHHHHHHHHH
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQ-GFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~-g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~ 265 (911)
.-.+++-+.|+|||+.++.+++..+.+ + .+++.|+-..-..++.+.+..+
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~g-------e~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFG-------EKVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT---------EEEEESSS-HHHHHHHHHTT
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcC-------CcEEEEEecCCHHHHHHHHHHc
Confidence 345778899999999999999888776 5 4688888766666666666544
No 346
>PRK14873 primosome assembly protein PriA; Provisional
Probab=64.27 E-value=36 Score=42.16 Aligned_cols=77 Identities=9% Similarity=-0.006 Sum_probs=63.6
Q ss_pred chHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc-C-CCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-R-YPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 518 S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~-g-i~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
|||.++..+++..... .|+.+||...-......+...|+.+ | ..++.+++.++..+|.+...+...+... ++|.
T Consensus 171 SGKTevyl~~i~~~l~-~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 171 EDWARRLAAAAAATLR-AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CcHHHHHHHHHHHHHH-cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 8999999999998877 5888999998888888888777765 4 6799999999999999999998876554 5555
Q ss_pred cCC
Q 043990 596 SKA 598 (911)
Q Consensus 596 tka 598 (911)
|..
T Consensus 247 tRS 249 (665)
T PRK14873 247 TRS 249 (665)
T ss_pred cce
Confidence 554
No 347
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.25 E-value=33 Score=39.28 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=26.6
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhc-CCCCCCCCceEEEEeCch
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQ-GFDGKPMVKKAIIVTPTS 253 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~-g~~~~p~~~~~LIV~P~s 253 (911)
+-.+|.-.+|.|||.++..++..+... | ..++.+|+-..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G------~~~V~lit~D~ 177 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFG------ASKVALLTTDS 177 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEeccc
Confidence 345678999999999999888776432 3 13556665443
No 348
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=64.20 E-value=14 Score=46.26 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=22.8
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
..+..||.-+.|.|||..+-++......
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467899999999999998888776544
No 349
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=63.81 E-value=51 Score=46.02 Aligned_cols=59 Identities=27% Similarity=0.227 Sum_probs=42.5
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV 255 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl 255 (911)
..|-+-|+++|.-++. .+.+=.||--..|+|||-..-+++..+...| .++++++|+.-.
T Consensus 428 ~~Ls~~Q~~Av~~il~--------s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G-------~~V~~lAPTgrA 486 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFT--------STKRFIIINGFGGTGSTEIAQLLLHLASEQG-------YEIQIITAGSLS 486 (1960)
T ss_pred CCCCHHHHHHHHHHHh--------CCCCeEEEEECCCCCHHHHHHHHHHHHHhcC-------CeEEEEeCCHHH
Confidence 3678999999998864 2223456777799999987777665554443 579999998654
No 350
>PHA00350 putative assembly protein
Probab=63.77 E-value=16 Score=42.21 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.9
Q ss_pred CCCchHHHHHHH-HHHHHHhcC
Q 043990 216 DMGLGKTLQSIA-LLYTLLCQG 236 (911)
Q Consensus 216 emGLGKTlqaIa-li~~ll~~g 236 (911)
-+|+|||+-++. .|...++.|
T Consensus 9 ~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 9 RPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred CCCCchhHHHHHHHHHHHHHCC
Confidence 389999999998 455556655
No 351
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=63.63 E-value=28 Score=42.25 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=23.5
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.+..|+.-+.|.|||..+-+++..+.+.
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 3456899999999999999999888654
No 352
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=63.23 E-value=29 Score=39.08 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 187 HQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 187 hQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.|...+..+...+. ...-.+..++.-+.|.|||..+..++..+++..
T Consensus 10 ~q~~~~~~L~~~~~---~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~ 56 (329)
T PRK08058 10 LQPVVVKMLQNSIA---KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLE 56 (329)
T ss_pred hHHHHHHHHHHHHH---cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 35555555544321 122344558999999999999999998887764
No 353
>PRK07004 replicative DNA helicase; Provisional
Probab=63.15 E-value=8.5 Score=45.47 Aligned_cols=46 Identities=13% Similarity=0.038 Sum_probs=33.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
.|||-.+|+|||.-++.++....... ..+++++..---..++...+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~------~~~v~~fSlEM~~~ql~~R~ 261 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEY------GLPVAVFSMEMPGTQLAMRM 261 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHc------CCeEEEEeCCCCHHHHHHHH
Confidence 48899999999999999887664321 24688887765555555444
No 354
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.93 E-value=13 Score=42.25 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=42.6
Q ss_pred HHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHh
Q 043990 194 FMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266 (911)
Q Consensus 194 ~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~ 266 (911)
||=+.+.|++ ..-+|.+|+-++|+|||+.|=|+.... .....=|.-+.|+..|.-|=+|..
T Consensus 233 ~mPe~F~Gir--rPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVSsstltSKwRGeSEKlv 293 (491)
T KOG0738|consen 233 WMPEFFKGIR--RPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVSSSTLTSKWRGESEKLV 293 (491)
T ss_pred hhHHHHhhcc--cccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEechhhhhhhhccchHHHH
Confidence 4545555554 345799999999999999888876542 124455666678899988777654
No 355
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=61.96 E-value=9.4 Score=41.21 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=63.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHHHHHHHHhCCCeEEEEecCCcchhhhccCcc
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDS 289 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~ 289 (911)
++||-.+|.|||.-++-++......+ ..++++++.---. .-+.+-+....+....-+. .+......+..+..
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~------~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~-~g~l~~~e~~~~~~ 94 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNG------GYPVLYFSLEMSEEELAARLLARLSGVPYNKIR-SGDLSDEEFERLQA 94 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT------SSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHH-CCGCHHHHHHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhc------CCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhh-ccccCHHHHHHHHH
Confidence 58999999999999999999887764 2589999986333 3344444444432111000 01100111111100
Q ss_pred cCCCCCCccEEEE-----ehHHHHhhccccccC-CCCcEEEEcCccccCCcc
Q 043990 290 FTDPCSSLQVLIV-----SYETFRMHSSKFSCS-ESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 290 ~~~~~~~~~VvI~-----Sye~l~~~~~~~~~~-~~~~lVIlDEAH~lKN~~ 335 (911)
.........++|. +.+.+......+... ...++||||=.|.+....
T Consensus 95 ~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~ 146 (259)
T PF03796_consen 95 AAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSED 146 (259)
T ss_dssp HHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSC
T ss_pred HHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCC
Confidence 0001112234443 334444444333323 578899999999998764
No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.94 E-value=48 Score=38.78 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=19.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll 233 (911)
.+++-.+|.|||-+++.++..+.
T Consensus 224 i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 224 VALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 46678899999999988887765
No 357
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=61.76 E-value=19 Score=44.65 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEI 262 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei 262 (911)
|-|-|+++|.+- .+-+++-...|+|||.+.+.-+..++.... . ....+|+|+.+ .....-+..+
T Consensus 2 Ln~~Q~~av~~~------------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~--~-~p~~IL~vTFt~~Aa~em~~Rl 66 (664)
T TIGR01074 2 LNPQQQEAVEYV------------TGPCLVLAGAGSGKTRVITNKIAYLIQNCG--Y-KARNIAAVTFTNKAAREMKERV 66 (664)
T ss_pred CCHHHHHHHhCC------------CCCEEEEecCCCCHHHHHHHHHHHHHHhcC--C-CHHHeEEEeccHHHHHHHHHHH
Confidence 558899988642 234566678999999999999998886421 1 13568888876 4455566666
Q ss_pred HHHhC
Q 043990 263 KKWVG 267 (911)
Q Consensus 263 ~k~~~ 267 (911)
.+.++
T Consensus 67 ~~~l~ 71 (664)
T TIGR01074 67 AKTLG 71 (664)
T ss_pred HHHhC
Confidence 66554
No 358
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=61.51 E-value=6.5 Score=49.45 Aligned_cols=11 Identities=55% Similarity=0.857 Sum_probs=5.5
Q ss_pred HHHHHhhccCC
Q 043990 686 EDLRDLFTFHD 696 (911)
Q Consensus 686 ~eL~~Lf~~~~ 696 (911)
+.|+.||.-++
T Consensus 2793 enLRaLfkAhp 2803 (3015)
T KOG0943|consen 2793 ENLRALFKAHP 2803 (3015)
T ss_pred HHHHHHHhcCC
Confidence 45555554443
No 359
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=60.95 E-value=14 Score=39.11 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=16.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLY 230 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~ 230 (911)
..-+||.-+.|+|||-.|-.+..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEECCCccchhHHHHHHHh
Confidence 45689999999999975554443
No 360
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.82 E-value=39 Score=40.23 Aligned_cols=45 Identities=29% Similarity=0.247 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
|...+..+...+.. ..-.+..++.-+.|.|||..+..++..+.+.
T Consensus 21 q~~i~~~L~~~i~~---~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~ 65 (486)
T PRK14953 21 QEIVVRILKNAVKL---QRVSHAYIFAGPRGTGKTTIARILAKVLNCL 65 (486)
T ss_pred hHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 55555555443321 1223445789999999999988888777543
No 361
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=60.77 E-value=46 Score=38.57 Aligned_cols=112 Identities=24% Similarity=0.296 Sum_probs=61.2
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCC-CeEEEEecCCcchhhhccCc
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGID 288 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~ 288 (911)
-.+++-=-|+|||-+|.=+++++.+++ .++|+||--.--.--.+.++..... .+.++.. +....
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~-------~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~~~~~------- 166 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKG-------KKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-GTEKD------- 166 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcC-------CceEEEecccCChHHHHHHHHHHHHcCCceecC-CCCCC-------
Confidence 345666789999999999999888754 3455555432222222223222211 1222222 11110
Q ss_pred ccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhccCCHHHHHHhhhhcCCC
Q 043990 289 SFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPG 356 (911)
Q Consensus 289 ~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l~El~sLl~fl~P~ 356 (911)
.|- ..+.-...+. ...+|+||||=|-|+.-.... ..|+-.+-..++|.
T Consensus 167 ---------Pv~-----Iak~al~~ak-~~~~DvvIvDTAGRl~ide~L-----m~El~~Ik~~~~P~ 214 (451)
T COG0541 167 ---------PVE-----IAKAALEKAK-EEGYDVVIVDTAGRLHIDEEL-----MDELKEIKEVINPD 214 (451)
T ss_pred ---------HHH-----HHHHHHHHHH-HcCCCEEEEeCCCcccccHHH-----HHHHHHHHhhcCCC
Confidence 011 1122222222 456899999999888665443 56777777777775
No 362
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=60.67 E-value=26 Score=38.53 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=23.8
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
..+.+|.-++|+|||..|-++...+...+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34778899999999999988887776655
No 363
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=60.26 E-value=19 Score=43.27 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=22.5
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
+..|+.-+.|.|||-.+-+++..+.+.
T Consensus 37 hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred eeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 345889999999999999998887654
No 364
>PRK08006 replicative DNA helicase; Provisional
Probab=60.08 E-value=16 Score=43.28 Aligned_cols=47 Identities=17% Similarity=0.069 Sum_probs=33.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIK 263 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~ 263 (911)
.|||.-+|+|||.-++.++....... ..+++++..---..++...+.
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~------g~~V~~fSlEM~~~ql~~Rll 273 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQ------DKPVLIFSLEMPGEQIMMRML 273 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhc------CCeEEEEeccCCHHHHHHHHH
Confidence 48899999999999999887765321 246888877655566655444
No 365
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=59.70 E-value=61 Score=37.93 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.3
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHH
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll 233 (911)
.-.+++-..|.|||-++.-++..+.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3467889999999999999988865
No 366
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=59.42 E-value=29 Score=42.58 Aligned_cols=83 Identities=19% Similarity=0.152 Sum_probs=58.4
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|-.-|+.|.++++... =.|+.-+.|+|||++++-++.+++..... ....-|+||||=+ +.|.|.-.-
T Consensus 378 ildsSq~~A~qs~ltye----------lsliqgppGTgkt~vtlkav~tLL~n~s~-~~~~epIlvvC~Tnhavdq~lig 446 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYE----------LSLIQGPPGTGKTLVTLKAVDTLLLNSSG-YTEPEPILVVCLTNHAVDQYLIG 446 (1025)
T ss_pred eecHHHHHHHHHHhhhh----------hheeecCCCCCceeehHHHHHHHHhcccc-cccccceeeeehhhHHHHHHHHH
Confidence 46667999999987633 23778889999999999999988765421 1134689999987 778887766
Q ss_pred HHHHhCCCeEEEEecCC
Q 043990 262 IKKWVGGRVQLIALCES 278 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~ 278 (911)
+..+ .+..++..++.
T Consensus 447 iy~~--qrpsImr~gsr 461 (1025)
T KOG1807|consen 447 IYYH--QRPSIMRQGSR 461 (1025)
T ss_pred HHhc--CCceEEEeccc
Confidence 6543 23444544443
No 367
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=59.41 E-value=22 Score=44.51 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=48.1
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh-hHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL-VSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL-l~qW~~ 260 (911)
..|-|-|+++|.+- .+-+++-...|+|||.+.+.-+.+++.... . ....+|+|+-+.- ...-.+
T Consensus 8 ~~Ln~~Q~~av~~~------------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~--v-~p~~IL~lTFT~kAA~Em~~ 72 (721)
T PRK11773 8 DSLNDKQREAVAAP------------LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN--A-SPYSIMAVTFTNKAAAEMRH 72 (721)
T ss_pred HhcCHHHHHHHhCC------------CCCEEEEecCCCCHHHHHHHHHHHHHHcCC--C-ChhHeEeeeccHHHHHHHHH
Confidence 45779999998642 134566667999999999999998886421 1 1357999999743 344444
Q ss_pred HHHHHhC
Q 043990 261 EIKKWVG 267 (911)
Q Consensus 261 Ei~k~~~ 267 (911)
.+.+.++
T Consensus 73 Rl~~~~~ 79 (721)
T PRK11773 73 RIEQLLG 79 (721)
T ss_pred HHHHHhc
Confidence 5555443
No 368
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=58.93 E-value=50 Score=36.13 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=25.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P 251 (911)
.++.-..|.|||-++.-++..+...+ +++++|.-
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g-------~~V~li~~ 108 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQG-------KSVLLAAG 108 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-------CEEEEEeC
Confidence 34567999999999999888775543 46666663
No 369
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=58.60 E-value=74 Score=37.19 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=25.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P 251 (911)
..|+-..|.|||-++.-++..+..+| .++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G-------~kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKG-------FKPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-------CCEEEEcC
Confidence 45678899999999998888776554 35566654
No 370
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=58.59 E-value=7.1 Score=47.07 Aligned_cols=59 Identities=24% Similarity=0.450 Sum_probs=33.1
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhh----cc--C-CCchhhhhhhcccccccc
Q 043990 646 STGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLF----TF--H-DDVRSEIHENMHCTRCQN 713 (911)
Q Consensus 646 ~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf----~~--~-~~~~~~t~d~~~c~~c~~ 713 (911)
..||+..+|++ +++|+.+...+-...- ..-+|.+|--+-| .+ . .....-.|-.+.| |.+
T Consensus 599 ~~gs~~~kmL~-lArkqrMNTdiRr~IF------csImsaeDyiDAFEklLkL~LK~~Q~rEI~~VllhC--~l~ 664 (822)
T KOG2141|consen 599 AEGSFADKMLE-LARKQRMNTDIRRAIF------CSIMSAEDYIDAFEKLLKLSLKGKQEREIARVLLHC--CLN 664 (822)
T ss_pred ccCCccHHHHH-HHHHhhcchHhhhhhe------eeeecchHHHHHHHHHHhccCCCcchHHHHHHHHHH--Hhh
Confidence 46788888888 4667766554433211 2235556555544 22 2 2235556777888 654
No 371
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.54 E-value=22 Score=41.28 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=19.6
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ 231 (911)
.....||.-+.|+|||..+-++...
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999887776543
No 372
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=58.06 E-value=16 Score=42.53 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=69.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCCCeEEEEe-cCCcchhhhcc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL-CESTRDDVVSG 286 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~~~~v~~~-~~~~r~~~~~~ 286 (911)
..-.|+|.-+|.|||.-|+.++....... .++++|..=---..||...+-..... +....+ .+......+..
T Consensus 196 ~dLii~AaRP~mGKTafalnia~n~a~~~------~~~v~iFSLEM~~eql~~R~Ls~~s~-v~~~kirtg~l~~~d~~~ 268 (435)
T COG0305 196 GDLIIVAARPGMGKTALALNIALNAAADG------RKPVAIFSLEMSEEQLVMRLLSSESG-IESSKLRTGRLSDDEWER 268 (435)
T ss_pred CCEEEEccCCCCChHHHHHHHHHHHHHhc------CCCeEEEEccCCHHHHHHHhhccccc-cchhccccccccHHHHHH
Confidence 44678999999999999999998876643 34577777667778887777544332 111111 11111111111
Q ss_pred CcccCCCCCCccEEEE-----ehHHHHhhccccccCCCCcEEEEcCccccCCc
Q 043990 287 IDSFTDPCSSLQVLIV-----SYETFRMHSSKFSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 287 ~~~~~~~~~~~~VvI~-----Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~ 334 (911)
+..........++.|- |+..++....++......+++++|=-|-+...
T Consensus 269 l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~ 321 (435)
T COG0305 269 LIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGG 321 (435)
T ss_pred HHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeeccc
Confidence 1111111122335553 44555555555555566899999988887554
No 373
>PRK05973 replicative DNA helicase; Provisional
Probab=58.04 E-value=15 Score=39.34 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=29.0
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
.-.+|+-.+|+|||.-++-++.....+| .+++++.--
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~G-------e~vlyfSlE 101 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSG-------RTGVFFTLE 101 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC-------CeEEEEEEe
Confidence 3458899999999999999988776654 367777754
No 374
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=57.42 E-value=30 Score=43.05 Aligned_cols=136 Identities=13% Similarity=0.065 Sum_probs=84.7
Q ss_pred cccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc-CCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEE
Q 043990 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-RYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFL 593 (911)
Q Consensus 515 ~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~-gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~L 593 (911)
+..|||.++..+++..... .|+.+||..........+...|+.+ |.++..++++.+..+|.....+...+... +++
T Consensus 225 vTGSGKTEvYl~~i~~~L~-~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~--vVI 301 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLA-QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR--VVI 301 (730)
T ss_pred CCCCcHHHHHHHHHHHHHH-cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce--EEE
Confidence 3459999999999999887 5889999888877666666666554 78899999999999999999999986554 444
Q ss_pred EecCCcccccCCCCCCEEEEeCCCCCcc----h--HHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHH
Q 043990 594 LSSKAGGCGLNLIGGNRLVLFDPDWNPA----N--DKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQ 656 (911)
Q Consensus 594 lStkagg~GLNL~~An~VIl~Dp~WNPa----~--~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~ 656 (911)
-+-.|.=. =+..-- +|+.|---+.+ . ..+|.+=+...++...+-|.-=-++-|+|-.-..
T Consensus 302 GtRSAlF~--Pf~~LG-LIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 302 GTRSALFL--PFKNLG-LIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANA 367 (730)
T ss_pred EechhhcC--chhhcc-EEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhh
Confidence 33333111 111222 23332211111 0 1233333333445556666655566677765443
No 375
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=56.92 E-value=51 Score=38.70 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHHHHHHHHh
Q 043990 217 MGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWEAEIKKWV 266 (911)
Q Consensus 217 mGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~Ei~k~~ 266 (911)
.|+|||..-+.=+..+....| ..+++|-|=+..+ .+.++-+.+|+
T Consensus 185 AGSGKT~~La~Kaa~lh~knP-----d~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNP-----DSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCC-----CceEEEEeehHHHHHHHHHHHHHHH
Confidence 599999876555555544442 4578888887444 55555555554
No 376
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=56.82 E-value=18 Score=36.83 Aligned_cols=27 Identities=41% Similarity=0.740 Sum_probs=23.1
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
+..++.-+.|.|||-.+..++..++..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 456889999999999999999888764
No 377
>PRK06904 replicative DNA helicase; Validated
Probab=56.50 E-value=21 Score=42.41 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=35.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~ 265 (911)
.|||.-+|.|||.-++.++....... ..+++++..---..++...+...
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~------g~~Vl~fSlEMs~~ql~~Rlla~ 272 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMAS------EKPVLVFSLEMPAEQIMMRMLAS 272 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhc------CCeEEEEeccCCHHHHHHHHHHh
Confidence 48899999999999988877664331 24789998876667776655433
No 378
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=56.47 E-value=64 Score=36.09 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
|.+++..+.+.+.. ..-.+.-++.-+.|.||+..|.+++..+++..
T Consensus 9 q~~~~~~L~~~i~~---~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQ---NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 55555555543321 12246778999999999999999999988765
No 379
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=55.90 E-value=37 Score=42.62 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=40.8
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS 253 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s 253 (911)
.|-|-|+++|... .+-+++-...|+|||.+.+.-+.+++..+. . ...++|+|+-+.
T Consensus 4 ~Ln~~Q~~av~~~------------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~--i-~P~~IL~lTFT~ 59 (726)
T TIGR01073 4 HLNPEQREAVKTT------------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN--V-APWNILAITFTN 59 (726)
T ss_pred ccCHHHHHHHhCC------------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC--C-CHHHeeeeeccH
Confidence 4779999998642 123566678999999999999998886531 1 135788888873
No 380
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=55.77 E-value=8.4 Score=46.63 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=50.2
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHH-
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWE- 259 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~- 259 (911)
....|||++-...|- ......+.+.-..-+|||..++.++...+.+. ..++|+|.|+ .+...|.
T Consensus 15 ~~~~Py~~eimd~~~--------~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~------P~~~l~v~Pt~~~a~~~~~ 80 (557)
T PF05876_consen 15 TDRTPYLREIMDALS--------DPSVREVVVMKSAQVGKTELLLNWIGYSIDQD------PGPMLYVQPTDDAAKDFSK 80 (557)
T ss_pred CCCChhHHHHHHhcC--------CcCccEEEEEEcchhhHhHHHHhhceEEEEeC------CCCEEEEEEcHHHHHHHHH
Confidence 345599998776653 34466778888889999998877776655543 3589999998 5667775
Q ss_pred HHHHHHh
Q 043990 260 AEIKKWV 266 (911)
Q Consensus 260 ~Ei~k~~ 266 (911)
..|...+
T Consensus 81 ~rl~Pmi 87 (557)
T PF05876_consen 81 ERLDPMI 87 (557)
T ss_pred HHHHHHH
Confidence 4555444
No 381
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=55.76 E-value=33 Score=39.91 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=22.3
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHH-HHhcC
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYT-LLCQG 236 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~-ll~~g 236 (911)
...+.|+--+.|+|||..+.++... .+..|
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG 238 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG 238 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC
Confidence 3457789999999999888886655 34443
No 382
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=55.76 E-value=75 Score=33.76 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=35.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCC-----CCCCCCceEEEEeC---chhhHHHHHHHHHHh
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGF-----DGKPMVKKAIIVTP---TSLVSNWEAEIKKWV 266 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~-----~~~p~~~~~LIV~P---~sLl~qW~~Ei~k~~ 266 (911)
++|+-+.|+|||..++.+++....-.+ .......++|+++- ...+.+-...+...+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 378889999999999998877542110 01123467899984 344444444444443
No 383
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=54.89 E-value=17 Score=39.82 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=18.4
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ 231 (911)
....-++|.-++|||||-.|--++..
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 33456799999999999755544433
No 384
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=54.80 E-value=25 Score=43.94 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=19.6
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ 231 (911)
.....||.-+.|+|||..+-++...
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4457799999999999877776643
No 385
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=54.57 E-value=82 Score=35.35 Aligned_cols=112 Identities=19% Similarity=0.258 Sum_probs=65.2
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCC-CeEEEEec-CCcchhhhccC
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALC-ESTRDDVVSGI 287 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~-~~~v~~~~-~~~r~~~~~~~ 287 (911)
=.++.---|.|||-+..=+...+..+| .++|+.+--.--.-=.++++-|... .+.++... |+...
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g-------~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA------ 207 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQG-------KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA------ 207 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCC-------CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH------
Confidence 334556689999988777777776665 4677766654443444455555431 23443321 11110
Q ss_pred cccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhccCCHHHHHHhhhhcCCCC
Q 043990 288 DSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGI 357 (911)
Q Consensus 288 ~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~N~l~El~sLl~fl~P~~ 357 (911)
. +-|+.+..- ....+|+||||=|=|+-|... -..||-.+.+.+.|..
T Consensus 208 ----------a---VafDAi~~A-----kar~~DvvliDTAGRLhnk~n-----LM~EL~KI~rV~~k~~ 254 (340)
T COG0552 208 ----------A---VAFDAIQAA-----KARGIDVVLIDTAGRLHNKKN-----LMDELKKIVRVIKKDD 254 (340)
T ss_pred ----------H---HHHHHHHHH-----HHcCCCEEEEeCcccccCchh-----HHHHHHHHHHHhcccc
Confidence 1 224443221 245799999999999977653 3667777777666543
No 386
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=54.31 E-value=16 Score=41.45 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~l 232 (911)
-..++|...+.+.... ..-..++.+||.++|+|||..|+++...|
T Consensus 30 ~~AReAagiiv~mIk~--~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 30 EKAREAAGIIVDMIKE--GKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp HHHHHHHHHHHHHHHT--T--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc--ccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 4567777777665431 12235788999999999999999998776
No 387
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=54.11 E-value=78 Score=30.53 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhccccccCCC-ceE--EEcCCCchHHHHHHHHHHHHHhcCCCCCCCCce--EEEEeCc-hhhHHHHHH
Q 043990 188 QREGVQFMFECVSGLLNAAGIH-GCI--LADDMGLGKTLQSIALLYTLLCQGFDGKPMVKK--AIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~-G~I--LADemGLGKTlqaIali~~ll~~g~~~~p~~~~--~LIV~P~-sLl~qW~~E 261 (911)
|..++.-+++.+.+.+...... --+ +--.+|.|||.++=.++..+...|....- +.. ...=+|. +-+...+.+
T Consensus 30 Qhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~-V~~f~~~~hFP~~~~v~~Yk~~ 108 (127)
T PF06309_consen 30 QHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPF-VHQFIATHHFPHNSNVDEYKEQ 108 (127)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCc-eeeecccccCCCchHHHHHHHH
Confidence 7777777777666655432222 222 34579999999999999888887743321 111 1222342 567778888
Q ss_pred HHHHhCC
Q 043990 262 IKKWVGG 268 (911)
Q Consensus 262 i~k~~~~ 268 (911)
+..|..+
T Consensus 109 L~~~I~~ 115 (127)
T PF06309_consen 109 LKSWIRG 115 (127)
T ss_pred HHHHHHH
Confidence 8888643
No 388
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=53.98 E-value=28 Score=37.91 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~l 232 (911)
+-+.|.+.+.++.. ...+-++++-++|+|||-..-+++..+
T Consensus 64 ~~~~~~~~l~~~~~--------~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLLE--------KPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHHh--------cCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 45778888887753 122346889999999998887777654
No 389
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=53.56 E-value=29 Score=37.59 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ 231 (911)
|+.+.-+..+..+.. .....+|..++|+|||..|-++...
T Consensus 5 ~~~~~l~~~~l~~l~------~g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 5 DAVKRVTSRALRYLK------SGYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred HHHHHHHHHHHHHHh------cCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 445555555554331 1346788999999999999888753
No 390
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=53.49 E-value=64 Score=41.57 Aligned_cols=94 Identities=11% Similarity=0.062 Sum_probs=66.0
Q ss_pred cchHHHHHHH-HHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceE
Q 043990 517 LSGKMHVLAR-LLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE----RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFV 591 (911)
Q Consensus 517 ~S~Kl~~L~~-LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~----~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v 591 (911)
.+||..+... ++..+. .+.+++|.+..+..+......+.. .++++..++|.++.+++.++++.+..+..+ +
T Consensus 482 GsGKT~val~a~l~al~--~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d--I 557 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVL--DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID--I 557 (926)
T ss_pred CccHHHHHHHHHHHHHH--hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce--E
Confidence 4899876544 333333 468999999999887776665554 467788899999999999999999876444 3
Q ss_pred EEEecCCcccccCCCCCCEEEEe
Q 043990 592 FLLSSKAGGCGLNLIGGNRLVLF 614 (911)
Q Consensus 592 ~LlStkagg~GLNL~~An~VIl~ 614 (911)
++.+.......+.+.....||+=
T Consensus 558 VIGTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 558 LIGTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred EEchHHHhhCCCCcccCCEEEee
Confidence 44444445555667777766663
No 391
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=53.38 E-value=33 Score=36.04 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=33.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKK 264 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k 264 (911)
.+++-++|.|||..++.++...+.++ .+++.|+-..-..+-.+.+..
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g-------~~~~y~s~e~~~~~l~~~~~~ 65 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNG-------EKAMYISLEEREERILGYAKS 65 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEECCCCHHHHHHHHHH
Confidence 36688999999999999988766554 478888877655554444433
No 392
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=52.85 E-value=38 Score=40.24 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhhcccccc---CCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 186 PHQREGVQFMFECVSGLLNAA---GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~---~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
|+|+-.+..++ |+.... .++-++|.-.=|-|||..+.+++++.+.-. +. ....+++++++
T Consensus 1 PwQ~fi~~~i~----G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~--g~-~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSIF----GWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD--GE-PGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHHh----ceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC--Cc-cCceEEEEeCC
Confidence 67885555443 332111 234567777789999998888766554322 11 12357778876
No 393
>CHL00095 clpC Clp protease ATP binding subunit
Probab=52.78 E-value=24 Score=44.88 Aligned_cols=48 Identities=25% Similarity=0.266 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhh----ccccccCCCc-eEEEcCCCchHHHHHHHHHHHHHh
Q 043990 187 HQREGVQFMFECVS----GLLNAAGIHG-CILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 187 hQ~egV~~m~~~~~----g~l~~~~~~G-~ILADemGLGKTlqaIali~~ll~ 234 (911)
-|.+++.-+...+. |+....+..| .+++-++|.|||..|-++...+..
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 48888887766543 3322223334 588999999999999988877653
No 394
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=52.68 E-value=39 Score=35.95 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=31.4
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSN 257 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~q 257 (911)
..-.+++-++|+|||..++-+++..+..| .+++.|+-..-..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~g-------e~~lyvs~ee~~~~ 63 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMG-------EPGIYVALEEHPVQ 63 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcC-------CcEEEEEeeCCHHH
Confidence 34557799999999999999988776554 46788875443333
No 395
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=52.06 E-value=40 Score=37.86 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=28.6
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll 233 (911)
.+-+.|.+-+..+.. ...+.|++-.||+|||-..-+++..+.
T Consensus 128 ~~~~~~~~~L~~~v~---------~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 128 IMTEAQASVIRSAID---------SRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCCHHHHHHHHHHHH---------cCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 455677655444432 235778999999999988777766553
No 396
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=52.05 E-value=37 Score=35.68 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=31.0
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAE 261 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~E 261 (911)
-.+++-++|+|||..+..++...+.++ .+++.|+-.....+..+.
T Consensus 22 ~~~i~G~~G~GKT~l~~~~~~~~~~~g-------~~~~~is~e~~~~~i~~~ 66 (229)
T TIGR03881 22 FVAVTGEPGTGKTIFCLHFAYKGLRDG-------DPVIYVTTEESRESIIRQ 66 (229)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC-------CeEEEEEccCCHHHHHHH
Confidence 346788999999999998887665543 367777765444444333
No 397
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=51.80 E-value=55 Score=34.52 Aligned_cols=29 Identities=28% Similarity=0.138 Sum_probs=21.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.+...|.-+.|+|||--.-++...+....
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~ 62 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQH 62 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 34578899999999997777666665543
No 398
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=51.57 E-value=38 Score=37.98 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=29.0
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVS 256 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~ 256 (911)
-..++-+.|+|||..|+.++......+ .+++.|-......
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~g-------~~v~yId~E~~~~ 96 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAG-------GTAAFIDAEHALD 96 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC-------CcEEEEcccchhH
Confidence 345788999999999999988876654 3566665554443
No 399
>PRK07773 replicative DNA helicase; Validated
Probab=51.34 E-value=26 Score=45.06 Aligned_cols=117 Identities=11% Similarity=0.103 Sum_probs=60.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCC-CeEEEEecCCcchhhhccCcc
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGIDS 289 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~ 289 (911)
.|||-.+|+|||.-++.++....... ..+++++.--.-..+....+...... ...-+. .+.-....+..+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~------~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i~-~g~l~~~~~~~~~~ 292 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRH------RLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDMR-SGRMSDDDWTRLAR 292 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhc------CCeEEEEecCCCHHHHHHHHHHHhcCCCHHHHh-cCCCCHHHHHHHHH
Confidence 58899999999999999998775442 24688887654445544444332211 110000 01000000000000
Q ss_pred cCCCCCCccEEE-----EehHHHHhhccccccCCCCcEEEEcCccccCCc
Q 043990 290 FTDPCSSLQVLI-----VSYETFRMHSSKFSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 290 ~~~~~~~~~VvI-----~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~ 334 (911)
........++.| .+.+.++.....+......++||||=-+.+...
T Consensus 293 a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~ 342 (886)
T PRK07773 293 AMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSG 342 (886)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCC
Confidence 000011223444 244555544444433456899999999988754
No 400
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=50.84 E-value=40 Score=35.86 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=28.0
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
-.+|.-+.|+|||..++.++..++.++ .+++.|+..
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g-------~~~~yi~~e 61 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNG-------YSVSYVSTQ 61 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-------CcEEEEeCC
Confidence 447789999999999999988876654 356777754
No 401
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=50.44 E-value=11 Score=43.65 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCceEEEE--eCchhhHHHHHHH
Q 043990 220 GKTLQSIALLYTLLCQGFDGKPMVKKAIIV--TPTSLVSNWEAEI 262 (911)
Q Consensus 220 GKTlqaIali~~ll~~g~~~~p~~~~~LIV--~P~sLl~qW~~Ei 262 (911)
=||.+-|...+-+-.+..+..|...+-=+- .|.+.-.||..|-
T Consensus 223 PKSr~eLv~~YGyDIRn~D~~Pr~~r~~ry~~~P~~~~~nw~der 267 (694)
T KOG4264|consen 223 PKSRKELVTKYGYDIRNKDGTPRQDREERYAPAPESTEENWSDER 267 (694)
T ss_pred chHHHHHHHHhCccccCCCCCcccccccccCCCCcccCcccchhh
Confidence 577665554443333344444443332233 4667778898876
No 402
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=49.57 E-value=96 Score=34.80 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=24.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P 251 (911)
.|.-..|.|||-++..++..+...+ ++++|++-
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~g-------~~V~Li~~ 150 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQG-------KKVLLAAG 150 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcC-------CeEEEEec
Confidence 3457999999999988887775443 45666653
No 403
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=49.00 E-value=34 Score=39.04 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVS 256 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~ 256 (911)
|-+-|+.++.++++.+.. .......|.-.-|+|||...=+++..+... .+.+++++|+.+..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~-------~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLIKAIIDYLRSR-------GKKVLVTAPTGIAA 63 (364)
T ss_pred CCHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHHHHHHHHhccc-------cceEEEecchHHHH
Confidence 557799999998776532 233455677788999999877777655332 35799999987653
No 404
>PF12846 AAA_10: AAA-like domain
Probab=48.87 E-value=33 Score=37.21 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=30.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
+++.-.+|+|||..+..++..++..+ .+++|+=|..-...|
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g-------~~~~i~D~~g~~~~~ 44 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRG-------PRVVIFDPKGDYSPL 44 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC-------CCEEEEcCCchHHHH
Confidence 46777899999999998888887766 357777676444443
No 405
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=48.20 E-value=6 Score=49.14 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCC
Q 043990 86 CRKPFKPPCSNGYDN 100 (911)
Q Consensus 86 ~~~~f~~~~~~~~~~ 100 (911)
.++-|......+.++
T Consensus 743 ~r~vy~d~LaDGlSP 757 (787)
T PF03115_consen 743 RRNVYMDALADGLSP 757 (787)
T ss_dssp ---------------
T ss_pred hhhhHHhhhccCCCh
Confidence 333444444444333
No 406
>PRK10689 transcription-repair coupling factor; Provisional
Probab=48.15 E-value=94 Score=41.10 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=63.0
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER----RYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~----gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
.+||..+....+..... .+.+++|.+..+..+..+...|..+ ++++..+.|..+.+++.+++.....+..+ ++
T Consensus 631 GsGKT~val~aa~~~~~-~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d--IV 707 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVE-NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID--IL 707 (1147)
T ss_pred CcCHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC--EE
Confidence 48998755443322222 4789999999998877776666543 56777899999999999999888765444 44
Q ss_pred EEecCCcccccCCCCCCEEEE
Q 043990 593 LLSSKAGGCGLNLIGGNRLVL 613 (911)
Q Consensus 593 LlStkagg~GLNL~~An~VIl 613 (911)
+.+.......+.+.....||+
T Consensus 708 VgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEE
Confidence 444444444455555555554
No 407
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=47.78 E-value=50 Score=34.90 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=34.4
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHH
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKK 264 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k 264 (911)
.-++++-++|+|||.-+..+++..+.++ .+++.|.=..-..+..+.+..
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g-------~~~~y~~~e~~~~~~~~~~~~ 74 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQG-------KKVYVITTENTSKSYLKQMES 74 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCC-------CEEEEEEcCCCHHHHHHHHHH
Confidence 4457789999999999999988766544 467777765444455554444
No 408
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=47.33 E-value=18 Score=40.79 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.7
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~l 232 (911)
...+|.+++-++|+|||..|+++...|
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHh
Confidence 346789999999999999999998776
No 409
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=47.03 E-value=29 Score=38.16 Aligned_cols=49 Identities=29% Similarity=0.368 Sum_probs=36.7
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHh
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~ 266 (911)
-+|.+|.-+.|+||++.|-+++... .....-|..+-|+..|.-|-+|..
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeehHHHHHHHhccHHHHH
Confidence 4688999999999999887776431 234566666788999987777664
No 410
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=46.97 E-value=25 Score=34.95 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=21.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g 236 (911)
|.+-++|.|||..++.++..+.+++
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g 26 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAG 26 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCC
Confidence 5566799999999999999998876
No 411
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=46.91 E-value=29 Score=40.02 Aligned_cols=43 Identities=28% Similarity=0.275 Sum_probs=29.9
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
....|.+|.-+.|+|||..|-++...+ ..+.+.+....++..|
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSELVQKF 205 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEeehHHHhHhh
Confidence 456789999999999999988877653 1235555555555444
No 412
>PRK08840 replicative DNA helicase; Provisional
Probab=46.66 E-value=32 Score=40.75 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=33.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIK 263 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~ 263 (911)
.|||.-+|.|||.-++.++....... ..+++++..---..++...+-
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~------~~~v~~fSlEMs~~ql~~Rll 266 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQ------DKPVLIFSLEMPAEQLMMRML 266 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhC------CCeEEEEeccCCHHHHHHHHH
Confidence 48899999999999988877764321 246888877655566655543
No 413
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=46.58 E-value=40 Score=37.93 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=28.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV 255 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl 255 (911)
..++-+.|+|||..|+.++......+ .++++|.+..-+
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~~g-------~~~vyId~E~~~ 95 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQKLG-------GTVAFIDAEHAL 95 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC-------CCEEEECccccH
Confidence 45788999999999999888776554 467777775444
No 414
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=46.28 E-value=44 Score=36.19 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=26.7
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
-.+++-++|+|||.-|+.++.....++ .+++.|.
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~G-------e~vlyis 71 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRG-------NPVLFVT 71 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCC-------CcEEEEE
Confidence 346789999999999999988766554 3677777
No 415
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=45.89 E-value=20 Score=38.78 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=20.3
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 218 GLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
|.|||-+++.+...+.++| +++|||
T Consensus 10 GVGKTT~~~nLA~~La~~g-------~rVLli 34 (268)
T TIGR01281 10 GIGKSTTSSNLSVAFAKLG-------KRVLQI 34 (268)
T ss_pred cCcHHHHHHHHHHHHHhCC-------CeEEEE
Confidence 7899999999999888766 356665
No 416
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.42 E-value=81 Score=37.87 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhc
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~ 235 (911)
+|.-..|.|||-.+..++..+...
T Consensus 354 aLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 354 ALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 456789999999988887766544
No 417
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=45.40 E-value=58 Score=36.56 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=27.2
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~l 232 (911)
.+-+.|.+.+..+.. ....++++-.+|+|||-.+-+++..+
T Consensus 132 ~~~~~~~~~L~~~v~---------~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 132 IMTAAQREAIIAAVR---------AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCHHHHHHHHHHHH---------cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 344667665444332 24577899999999997766666554
No 418
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=44.85 E-value=33 Score=35.29 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g 236 (911)
|.+-++|.|||..+++++..+.+++
T Consensus 5 I~~t~t~vGKT~vslgL~~~l~~~g 29 (199)
T PF13500_consen 5 ITGTDTGVGKTVVSLGLARALRRRG 29 (199)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 7788999999999999999998876
No 419
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=44.81 E-value=21 Score=37.39 Aligned_cols=14 Identities=57% Similarity=0.598 Sum_probs=12.2
Q ss_pred CCcEEEEcCccccC
Q 043990 319 SCDLLICDEAHRLK 332 (911)
Q Consensus 319 ~~~lVIlDEAH~lK 332 (911)
.++.+|+||++.+-
T Consensus 62 ~~~~liiDE~~~~~ 75 (234)
T PF01443_consen 62 SYDTLIIDEAQLLP 75 (234)
T ss_pred cCCEEEEeccccCC
Confidence 58899999999984
No 420
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.76 E-value=43 Score=39.53 Aligned_cols=115 Identities=16% Similarity=0.241 Sum_probs=79.3
Q ss_pred chHHHHH-HHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 518 SGKMHVL-ARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 518 S~Kl~~L-~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
..++... ..++..+...+-.-++|+...-=-.-.|..++++.++.|+.+.--++..+-.++-+-|-.+... ++|.+-
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~--vlLyTE 610 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKS--VLLYTE 610 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCce--EEEEeh
Confidence 3444433 4466666654455677776554455677889999999999998877777777777788775544 566665
Q ss_pred CC-cccccCCCCCCEEEEeCCCCCcchHHHH---HHhhhhcC
Q 043990 597 KA-GGCGLNLIGGNRLVLFDPDWNPANDKQA---AARVWRDG 634 (911)
Q Consensus 597 ka-gg~GLNL~~An~VIl~Dp~WNPa~~~QA---igR~~RiG 634 (911)
++ -=.--.+.|...||||.||-||.-|.-- ++|..-.|
T Consensus 611 R~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 611 RAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred hhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccC
Confidence 55 2245678999999999999999876544 44554444
No 421
>PRK04328 hypothetical protein; Provisional
Probab=44.54 E-value=49 Score=35.62 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=27.4
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
-.+++-++|+|||..++.+++..+..| .++++|.=.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~g-------e~~lyis~e 60 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMG-------EPGVYVALE 60 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC-------CcEEEEEee
Confidence 345789999999999999998876655 356777643
No 422
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=44.47 E-value=73 Score=34.39 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=11.8
Q ss_pred CCcEEEEcCccccCC
Q 043990 319 SCDLLICDEAHRLKN 333 (911)
Q Consensus 319 ~~~lVIlDEAH~lKN 333 (911)
.--+||+||.|++..
T Consensus 103 ~~vll~iDei~r~a~ 117 (249)
T cd01128 103 KDVVILLDSITRLAR 117 (249)
T ss_pred CCEEEEEECHHHhhh
Confidence 345899999999854
No 423
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=44.39 E-value=17 Score=41.40 Aligned_cols=73 Identities=26% Similarity=0.408 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHH----HHHHHHHHHh---cCCCCCCC---------------C
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQ----SIALLYTLLC---QGFDGKPM---------------V 243 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlq----aIali~~ll~---~g~~~~p~---------------~ 243 (911)
+.|.++|.-++ +.+-+++|.|+|+|||-. .|-++|..++ .|..++.. .
T Consensus 27 dvqaeaiplil----------gggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~~~~ga~~~w~mn~~Dr 96 (725)
T KOG0349|consen 27 DVQAEAIPLIL----------GGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGGMADGAPREWKMNKQDR 96 (725)
T ss_pred ccccccccEEe----------cCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCcccCCCccccccCcccc
Confidence 45888876542 445678999999999954 3444454432 23222211 1
Q ss_pred ceEEEEeCchhhHHHHHHHHHHhCCC
Q 043990 244 KKAIIVTPTSLVSNWEAEIKKWVGGR 269 (911)
Q Consensus 244 ~~~LIV~P~sLl~qW~~Ei~k~~~~~ 269 (911)
+-.|-|.|..|.-| -+|.++|.+.+
T Consensus 97 g~alaI~~dGL~Cq-Sre~KeWhGcR 121 (725)
T KOG0349|consen 97 GLALAIDEDGLACQ-SREKKEWHGCR 121 (725)
T ss_pred CceeeEcCCccccc-hhHHhhhhccc
Confidence 24688888877654 46888898753
No 424
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=43.75 E-value=30 Score=34.53 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=22.8
Q ss_pred EEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 213 LADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 213 LADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
.+-.-|.|||..++.++..+...| .++|+|
T Consensus 5 ~s~kgG~GKTt~a~~LA~~la~~g-------~~vllv 34 (169)
T cd02037 5 MSGKGGVGKSTVAVNLALALAKLG-------YKVGLL 34 (169)
T ss_pred ecCCCcCChhHHHHHHHHHHHHcC-------CcEEEE
Confidence 334458999999999999887765 366766
No 425
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=43.62 E-value=88 Score=36.14 Aligned_cols=89 Identities=13% Similarity=0.200 Sum_probs=57.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCccc
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~ 290 (911)
.+++-|+|-||+-.-+-++..+..+ +++|.|+=---+.||+-...+.--..
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~--------~~vLYVsGEES~~QiklRA~RL~~~~--------------------- 146 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKR--------GKVLYVSGEESLQQIKLRADRLGLPT--------------------- 146 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhc--------CcEEEEeCCcCHHHHHHHHHHhCCCc---------------------
Confidence 3668999999997666666555443 27999999999999988887763111
Q ss_pred CCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCcc
Q 043990 291 TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 291 ~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~ 335 (911)
.++.+.....+......+. ..+++++|+|-.+.+-++.
T Consensus 147 ------~~l~l~aEt~~e~I~~~l~-~~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 147 ------NNLYLLAETNLEDIIAELE-QEKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred ------cceEEehhcCHHHHHHHHH-hcCCCEEEEeccceeeccc
Confidence 1233433333322222222 3679999999999885543
No 426
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=42.90 E-value=37 Score=39.31 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=29.8
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
...+|++|.-+.|+|||..+-+++..+ ..+.+.+.+..++..|
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVVGSEFVQKY 219 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEehHHHHHHh
Confidence 346799999999999999887776543 1245555555554444
No 427
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.67 E-value=4.1e+02 Score=31.42 Aligned_cols=96 Identities=11% Similarity=0.129 Sum_probs=64.5
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
..+||-. .-+|..+. .+..+||++..+..+.-....|...|++...+.|..+..++..+......+... +++++
T Consensus 35 TGsGKTl--~y~lp~l~--~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~--il~~T 108 (470)
T TIGR00614 35 TGGGKSL--CYQLPALC--SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIK--LLYVT 108 (470)
T ss_pred CCCcHhH--HHHHHHHH--cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCC--EEEEC
Confidence 4588853 23333333 256789999998887777777888899999999999998888888888664433 56666
Q ss_pred cCCccccc-------CCCCCCEEEEeCCC
Q 043990 596 SKAGGCGL-------NLIGGNRLVLFDPD 617 (911)
Q Consensus 596 tkagg~GL-------NL~~An~VIl~Dp~ 617 (911)
........ .+.....||+=+.+
T Consensus 109 Pe~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 109 PEKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred HHHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 55433222 34455666654433
No 428
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=42.57 E-value=24 Score=38.43 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 218 GLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
|.|||-+++.+...+.+.| +++|+|
T Consensus 11 GVGKTT~~~nLA~~La~~G-------~rVLlI 35 (274)
T PRK13235 11 GIGKSTTTQNTVAGLAEMG-------KKVMVV 35 (274)
T ss_pred CccHHHHHHHHHHHHHHCC-------CcEEEE
Confidence 7899999999999988776 356666
No 429
>PRK10037 cell division protein; Provisional
Probab=42.44 E-value=24 Score=37.80 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=20.8
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 218 GLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
|.|||..++.+...+..+| +++|+|
T Consensus 12 GvGKTT~a~nLA~~La~~G-------~rVLlI 36 (250)
T PRK10037 12 GVGTTSITAALAWSLQMLG-------ENVLVI 36 (250)
T ss_pred CccHHHHHHHHHHHHHhcC-------CcEEEE
Confidence 7899999999999888776 367776
No 430
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=42.14 E-value=57 Score=36.25 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=20.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~l 232 (911)
.++.+++-.||+|||-.+-+++..+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999998877776554
No 431
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=42.09 E-value=53 Score=41.08 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCCCeE
Q 043990 192 VQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQ 271 (911)
Q Consensus 192 V~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~~~~ 271 (911)
|..+.+ .|.....++-||.-|.|.|||..+=.++....... +|..|. ...
T Consensus 179 I~r~iq----IL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~-------------VP~~L~-------------~~~ 228 (786)
T COG0542 179 IRRTIQ----ILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGD-------------VPESLK-------------DKR 228 (786)
T ss_pred HHHHHH----HHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCC-------------CCHHHc-------------CCE
Q ss_pred EEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccc
Q 043990 272 LIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 272 v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
++.+.-+.-..-.+--..|. +.++.......... --+++|||.|.+-...+
T Consensus 229 i~sLD~g~LvAGakyRGeFE-------------eRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~ 279 (786)
T COG0542 229 IYSLDLGSLVAGAKYRGEFE-------------ERLKAVLKEVEKSK-NVILFIDEIHTIVGAGA 279 (786)
T ss_pred EEEecHHHHhccccccCcHH-------------HHHHHHHHHHhcCC-CeEEEEechhhhcCCCc
No 432
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=42.09 E-value=1.6e+02 Score=36.11 Aligned_cols=91 Identities=12% Similarity=0.161 Sum_probs=68.6
Q ss_pred chHHH-HHHHHHHHHhhcCCCeEEEEEcch----HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 518 SGKMH-VLARLLGHLRQRTDDRIVLVSNYT----QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 518 S~Kl~-~L~~LL~~l~~~~~~KVIIFSq~~----~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
|||.- ++..++..+. .|..+.+-.... ++..-+.++|...|+.+..++|++..++|.++.++-.+|..+ +
T Consensus 294 SGKTvVA~laml~ai~--~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---i 368 (677)
T COG1200 294 SGKTVVALLAMLAAIE--AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---I 368 (677)
T ss_pred CCHHHHHHHHHHHHHH--cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---E
Confidence 88855 3445555554 467777776653 567788889999999999999999999999999999998777 6
Q ss_pred EEecCC-cccccCCCCCCEEEE
Q 043990 593 LLSSKA-GGCGLNLIGGNRLVL 613 (911)
Q Consensus 593 LlStka-gg~GLNL~~An~VIl 613 (911)
++-|.| .-..+++...-.||+
T Consensus 369 vVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 369 VVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EEEcchhhhcceeecceeEEEE
Confidence 676666 556666666666654
No 433
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=42.06 E-value=32 Score=38.10 Aligned_cols=47 Identities=28% Similarity=0.296 Sum_probs=33.4
Q ss_pred ccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHH
Q 043990 205 AAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAE 261 (911)
Q Consensus 205 ~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~E 261 (911)
.....||+|.-..|.|||++|=+++.++ .-..|+|+-..++.-..-|
T Consensus 163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~ss~lv~kyiGE 209 (388)
T KOG0651|consen 163 IKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVVSSALVDKYIGE 209 (388)
T ss_pred CCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEeeHhhhhhhhccc
Confidence 3456799999999999999999988775 1234556555665444333
No 434
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=41.85 E-value=26 Score=38.26 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=20.7
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 218 GLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
|.|||-.++.+...+...| +++|||
T Consensus 11 GVGKTT~a~nLA~~La~~G-------~rVLli 35 (279)
T PRK13230 11 GIGKSTTVCNIAAALAESG-------KKVLVV 35 (279)
T ss_pred CCcHHHHHHHHHHHHHhCC-------CEEEEE
Confidence 7899999999999998776 356666
No 435
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=40.97 E-value=1e+02 Score=32.18 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=27.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS 253 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s 253 (911)
..|+-+.|.|||..++.++......+.-+.. ..+++.|....
T Consensus 22 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~-~~~v~yi~~e~ 63 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGL-EGKVVYIDTEG 63 (226)
T ss_pred EEEeCCCCCChhHHHHHHHHHhhcccccCCC-cceEEEEecCC
Confidence 4677899999999999988776544311111 24667777654
No 436
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=40.89 E-value=2.9e+02 Score=27.54 Aligned_cols=42 Identities=7% Similarity=0.044 Sum_probs=36.7
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE 558 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~ 558 (911)
..++++.++.+|+++... .|.||+|.+...+.+..|-++|=.
T Consensus 10 ~~~~~~~~acrL~~Ka~~-~G~rv~I~~~d~~~~~~LD~~LWt 51 (154)
T PRK06646 10 SDELLLKSILLLIEKCYY-SDLKSVILTADADQQEMLNKNLWT 51 (154)
T ss_pred CCChHHHHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHHhcC
Confidence 347899999999999887 599999999999999999988854
No 437
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=40.77 E-value=72 Score=32.27 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=37.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCC-C--CCCCceEEEEeCchhhHHHHHHHHHHhC
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFD-G--KPMVKKAIIVTPTSLVSNWEAEIKKWVG 267 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~-~--~p~~~~~LIV~P~sLl~qW~~Ei~k~~~ 267 (911)
++++-+.|.|||..++.++..+.....- + .+...++|+|..-.-..++.+.+.....
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQ 94 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhc
Confidence 5788999999999999999888742110 1 1134578888887667777777776654
No 438
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=40.65 E-value=52 Score=28.46 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=17.9
Q ss_pred cCCCchHHHHHHHHHHHHHhcC
Q 043990 215 DDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 215 DemGLGKTlqaIali~~ll~~g 236 (911)
-..|.|||..+..++..+.+.+
T Consensus 6 g~~G~Gktt~~~~l~~~l~~~g 27 (99)
T cd01983 6 GKGGVGKTTLAANLAAALAKRG 27 (99)
T ss_pred CCCCCCHHHHHHHHHHHHHHCC
Confidence 3359999999999998887654
No 439
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=40.42 E-value=44 Score=40.67 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
.|+.|.+-.+-+++++. .++=||+--+||+|||+..|+..++.+.
T Consensus 16 PYdIQ~~lM~elyrvLe------~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 16 PYDIQEDLMRELYRVLE------EGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred chhHHHHHHHHHHHHHh------cCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 35778876666666542 2335699999999999987766655443
No 440
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=40.24 E-value=13 Score=44.52 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEE-cCCCchHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILA-DDMGLGKTLQSIAL 228 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILA-DemGLGKTlqaIal 228 (911)
=||.-+..-+-.|+ .|++|+|+| -.||+|||.+++..
T Consensus 69 vy~~~~~~lV~svl------~GyNgtvFaYGQTGsGKTyTM~G~ 106 (574)
T KOG4280|consen 69 VYQETVAPLVESVL------EGYNGTVFAYGQTGSGKTYTMIGP 106 (574)
T ss_pred HHHHHhHHHHHHHh------cccCceEEEeccCCCCCceEeeCC
Confidence 46777777555554 467899998 67999999987665
No 441
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=40.24 E-value=28 Score=38.43 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=17.1
Q ss_pred CchHHHHHHHHHHHHHhcC
Q 043990 218 GLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g 236 (911)
|.|||-+++.+.+.+.+.|
T Consensus 10 GVGKTTta~nLA~~La~~G 28 (290)
T CHL00072 10 GIGKSTTSCNISIALARRG 28 (290)
T ss_pred CCcHHHHHHHHHHHHHHCC
Confidence 7899999999999998776
No 442
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=40.19 E-value=25 Score=40.49 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=17.5
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
|.+++|+ -+.|.|||..+-.+......
T Consensus 169 GQR~lIv-gppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 169 GQRGLIV-APPKAGKTVLLQNIANSITT 195 (416)
T ss_pred CceEEEe-CCCCCChhHHHHHHHHHHHh
Confidence 4556555 56899999766665554433
No 443
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=40.19 E-value=21 Score=39.31 Aligned_cols=12 Identities=8% Similarity=0.108 Sum_probs=5.9
Q ss_pred CCceEEEcCCCc
Q 043990 208 IHGCILADDMGL 219 (911)
Q Consensus 208 ~~G~ILADemGL 219 (911)
++|.|-.-|.+.
T Consensus 190 fN~TV~IvE~~~ 201 (285)
T PF03896_consen 190 FNGTVTIVEPES 201 (285)
T ss_pred ecceEEEeecCC
Confidence 345555444444
No 444
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=40.10 E-value=22 Score=41.58 Aligned_cols=6 Identities=33% Similarity=0.927 Sum_probs=3.3
Q ss_pred cccccc
Q 043990 71 SLLPRV 76 (911)
Q Consensus 71 ~~~~~~ 76 (911)
.|||.|
T Consensus 279 tfLPsL 284 (432)
T PF09073_consen 279 TFLPSL 284 (432)
T ss_pred ccCchh
Confidence 466644
No 445
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=40.06 E-value=60 Score=38.74 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=44.0
Q ss_pred hhhhccChHHHHHHHHHHHHhhhcccccc----CCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043990 178 PLLVRFLRPHQREGVQFMFECVSGLLNAA----GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS 253 (911)
Q Consensus 178 p~l~~~LrphQ~egV~~m~~~~~g~l~~~----~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s 253 (911)
|+..-.|-|||+-.+.-++ |+.... ...-+++--.=|=|||-.+.+++++.+--... ....+.|++|+-
T Consensus 56 ~~~p~~l~PwQkFiia~l~----G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~---~~~~~~i~A~s~ 128 (546)
T COG4626 56 PGFPESLEPWQKFIVAALF----GFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR---SGAGIYILAPSV 128 (546)
T ss_pred CCCccccchHHHHHHHHHh----ceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh---cCCcEEEEeccH
Confidence 3344567799997665554 443322 12345677788999999888887765443321 235789999984
No 446
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=40.02 E-value=66 Score=42.98 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHH
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWE 259 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~ 259 (911)
-+-|.++|. ...+..++...-|+|||.+.+.-+..++..+. ...++||||=+....++.
T Consensus 3 t~~Q~~ai~------------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~----~~~~il~~tFt~~aa~e~ 61 (1232)
T TIGR02785 3 TDEQWQAIY------------TRGQNILVSASAGSGKTAVLVERIIKKILRGV----DIDRLLVVTFTNAAAREM 61 (1232)
T ss_pred CHHHHHHHh------------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC----CHhhEEEEeccHHHHHHH
Confidence 367888875 12346788889999999999998877776551 246799999987776653
No 447
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=39.61 E-value=68 Score=27.89 Aligned_cols=46 Identities=26% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCC-EEEEeCCCC
Q 043990 526 RLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP-YLRLDGTTS 571 (911)
Q Consensus 526 ~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~-~~~LdGsts 571 (911)
..+.......+.++||+|........+...|...|+. +..|+|++.
T Consensus 46 ~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 46 ELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred HHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 3333333346789999998877788889999999998 788899875
No 448
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=39.55 E-value=64 Score=34.77 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=30.4
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS 253 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s 253 (911)
+-.++.-++|+|||+-++-+++..+..| .|++.|.-..
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~g-------e~vlyvs~~e 61 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREG-------EPVLYVSTEE 61 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcC-------CcEEEEEecC
Confidence 3446789999999999999999988775 4678887653
No 449
>PRK13766 Hef nuclease; Provisional
Probab=39.52 E-value=4.8e+02 Score=32.97 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=59.2
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc-C---CCEEEEeCCCCHHHHHHHHHhhcCCCCCceE
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-R---YPYLRLDGTTSISKRQKLVNHFNDPSKNEFV 591 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~-g---i~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v 591 (911)
..+||..+..-++.......+.++||++.....+......+... + .++..++|.++..+|.++... .+ +
T Consensus 38 tG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~--i 110 (773)
T PRK13766 38 TGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AK--V 110 (773)
T ss_pred CCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CC--E
Confidence 34888764444443333346789999999987776555555543 3 378889999998888765532 23 5
Q ss_pred EEEecCCc-----ccccCCCCCCEEEEeCCC
Q 043990 592 FLLSSKAG-----GCGLNLIGGNRLVLFDPD 617 (911)
Q Consensus 592 ~LlStkag-----g~GLNL~~An~VIl~Dp~ 617 (911)
++.++... ..-+++...+.||+=+.+
T Consensus 111 iv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 111 IVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 55555433 223455666777766554
No 450
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=39.38 E-value=29 Score=37.53 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=21.6
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 216 DMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 216 emGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
--|.|||-+++.+...+.++| +++|||
T Consensus 10 KGGVGKTT~~~nLA~~la~~G-------~kVLli 36 (270)
T PRK13185 10 KGGIGKSTTSSNLSAAFAKLG-------KKVLQI 36 (270)
T ss_pred CCCCCHHHHHHHHHHHHHHCC-------CeEEEE
Confidence 348899999999999988765 357766
No 451
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=39.25 E-value=52 Score=36.64 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.0
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
...++.-+.|+|||..+.++...+..
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35789999999999999998877654
No 452
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=39.19 E-value=30 Score=36.00 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=18.0
Q ss_pred CCCchHHHHHHHHHHHHHhcC
Q 043990 216 DMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 216 emGLGKTlqaIali~~ll~~g 236 (911)
--|.|||..+..++..+.+.|
T Consensus 8 KGGvGKTt~~~nLA~~la~~G 28 (212)
T cd02117 8 KGGIGKSTTSQNLSAALAEMG 28 (212)
T ss_pred CCcCcHHHHHHHHHHHHHHCC
Confidence 348899999999999988876
No 453
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=39.07 E-value=30 Score=37.58 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 218 GLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
|.|||.+++.+...+..+| +++|||
T Consensus 10 GVGKTT~a~nLA~~La~~G-------~~Vlli 34 (275)
T TIGR01287 10 GIGKSTTTQNIAAALAEMG-------KKVMIV 34 (275)
T ss_pred cCcHHHHHHHHHHHHHHCC-------CeEEEE
Confidence 7799999999999998776 356665
No 454
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=38.94 E-value=42 Score=35.14 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=23.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCC
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGF 237 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~ 237 (911)
|.+-++|.|||..+++++..+.++|.
T Consensus 4 I~~t~t~~GKT~vs~~L~~~l~~~g~ 29 (222)
T PRK00090 4 VTGTDTDVGKTVVTAALAQALREAGY 29 (222)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHcCC
Confidence 66788999999999999999988874
No 455
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=38.54 E-value=43 Score=38.34 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=49.0
Q ss_pred ccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 173 PITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 173 ~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
.+.++|.+..++-=| .+-.+|. .++.....|++|--+.|.|||++|=+++..+ .-+.++|-..
T Consensus 120 ~~~~~p~f~dk~~~h--i~kn~l~-----~~~ik~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~ 182 (413)
T PLN00020 120 GYYIAPAFMDKVAVH--IAKNFLA-----LPNIKVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAG 182 (413)
T ss_pred ccccCHHHHHHHHHH--HHhhhhh-----ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHH
Confidence 456677666543322 2223332 1233556788999999999999999888765 1245677777
Q ss_pred hhhHHHHHHHHHH
Q 043990 253 SLVSNWEAEIKKW 265 (911)
Q Consensus 253 sLl~qW~~Ei~k~ 265 (911)
.|+..|.-|=++-
T Consensus 183 eL~sk~vGEsEk~ 195 (413)
T PLN00020 183 ELESENAGEPGKL 195 (413)
T ss_pred HhhcCcCCcHHHH
Confidence 8887776665544
No 456
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=38.40 E-value=31 Score=37.35 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=17.1
Q ss_pred CchHHHHHHHHHHHHHhcC
Q 043990 218 GLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g 236 (911)
|.|||-+++.+.+.+..+|
T Consensus 10 GvGKTT~a~nLA~~la~~G 28 (267)
T cd02032 10 GIGKSTTSSNLSVALAKRG 28 (267)
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 7899999999999988776
No 457
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.22 E-value=44 Score=39.43 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceE-EEcCCCchHHHHHHHHHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCI-LADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~I-LADemGLGKTlqaIali~~ll 233 (911)
+.|+|...+..++. ..+|.| +.-+||+|||.+.-+++..+.
T Consensus 242 ~~~~~~~~~~~~~~---------~p~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 242 MSPFQLARLLRLLN---------RPQGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred CCHHHHHHHHHHHh---------CCCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 46888888887765 234554 468999999999888887663
No 458
>PHA02518 ParA-like protein; Provisional
Probab=38.04 E-value=34 Score=35.21 Aligned_cols=36 Identities=31% Similarity=0.541 Sum_probs=26.4
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCceEEEE--eCchhhHHHHH
Q 043990 218 GLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV--TPTSLVSNWEA 260 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g~~~~p~~~~~LIV--~P~sLl~qW~~ 260 (911)
|.|||-.++.+.+.+..+| .++|+| .|..-+..|..
T Consensus 11 GvGKTT~a~~la~~la~~g-------~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 11 GAGKTTVATNLASWLHADG-------HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCHHHHHHHHHHHHHhCC-------CeEEEEeCCCCCChHHHHH
Confidence 7899999999999887765 356655 35555667753
No 459
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.71 E-value=26 Score=40.64 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=34.6
Q ss_pred CCCcccccChhhhccChH-----------HHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 169 GNLVPITVDPLLVRFLRP-----------HQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 169 ~~~~~v~v~p~l~~~Lrp-----------hQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
..+..+..+|.+...+-. |++.|..|. +|.+|.-++|+|||-...|+ +.++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK-------------RGYLLYGPPGTGKSS~IaAm-An~L~y 261 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK-------------RGYLLYGPPGTGKSSFIAAM-ANYLNY 261 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh-------------ccceeeCCCCCCHHHHHHHH-HhhcCC
Confidence 445566777776554332 666666664 68899999999999664444 444443
No 460
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=37.40 E-value=28 Score=38.05 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=21.2
Q ss_pred ccCCCceEEEcCCCchHHHHHHHHH
Q 043990 205 AAGIHGCILADDMGLGKTLQSIALL 229 (911)
Q Consensus 205 ~~~~~G~ILADemGLGKTlqaIali 229 (911)
.....|+||.-+.|+|||+.|=|++
T Consensus 216 ikpPKGVIlyG~PGTGKTLLAKAVA 240 (440)
T KOG0726|consen 216 IKPPKGVILYGEPGTGKTLLAKAVA 240 (440)
T ss_pred CCCCCeeEEeCCCCCchhHHHHHHh
Confidence 3567899999999999999777765
No 461
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=37.14 E-value=13 Score=38.06 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=17.3
Q ss_pred EEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 213 LADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 213 LADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
|-.+=|-|||...-.++..+...+ ..+++|.+|.
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~------~~~I~vtAP~ 35 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKG------KIRILVTAPS 35 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-----------EEEE-SS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhc------CceEEEecCC
Confidence 334569999975444444333332 2478999997
No 462
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=36.86 E-value=53 Score=37.43 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~l 232 (911)
...|++|.-+.|+|||..+-++...+
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999888876543
No 463
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=36.81 E-value=50 Score=36.21 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.2
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~l 232 (911)
..++.+||-++|+|||..|+++...|
T Consensus 63 aGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHh
Confidence 35688999999999999999887665
No 464
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=36.25 E-value=51 Score=29.03 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.4
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCC
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts 571 (911)
.++++|+||+.-.........|+..|+.+..|+|++.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 4678999998866777888899999998888999875
No 465
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=35.94 E-value=1.7e+02 Score=38.92 Aligned_cols=72 Identities=8% Similarity=0.037 Sum_probs=50.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH----cCCCEE---EEeCCCCHHHHHHHHHhhcCCCCC
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE----RRYPYL---RLDGTTSISKRQKLVNHFNDPSKN 588 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~----~gi~~~---~LdGsts~~~R~~iv~~Fn~~~~~ 588 (911)
..+||..++.-++..+.. .+.++||.+..+..+..+...+.. .|+... .++|+++..+|....+++.++..+
T Consensus 102 TGsGKT~f~l~~~~~l~~-~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~d 180 (1171)
T TIGR01054 102 TGVGKTTFGLAMSLFLAK-KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFD 180 (1171)
T ss_pred CCCCHHHHHHHHHHHHHh-cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCC
Confidence 458998755544444433 478999999999887766665554 355543 478999999998888888875444
No 466
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=35.84 E-value=57 Score=32.88 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=17.8
Q ss_pred CCCchHHHHHHHHHHHHHhcC
Q 043990 216 DMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 216 emGLGKTlqaIali~~ll~~g 236 (911)
-=|.|||..+..+...+...|
T Consensus 7 kGG~GKTt~a~~la~~la~~g 27 (195)
T PF01656_consen 7 KGGVGKTTIAANLAQALARKG 27 (195)
T ss_dssp STTSSHHHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHhcccccc
Confidence 348999999999999988765
No 467
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=35.29 E-value=77 Score=29.28 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCC-EEEEeCCCC
Q 043990 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP-YLRLDGTTS 571 (911)
Q Consensus 523 ~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~-~~~LdGsts 571 (911)
.+..++..+....+++|||+|..-.....+...|...|++ +..++|++.
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 4445555544335789999999866777888889999985 777888763
No 468
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=35.22 E-value=26 Score=40.79 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=5.2
Q ss_pred EEEEeCCCCC
Q 043990 610 RLVLFDPDWN 619 (911)
Q Consensus 610 ~VIl~Dp~WN 619 (911)
.=|+|||.-+
T Consensus 481 ~~vyYdp~~S 490 (641)
T KOG0772|consen 481 AHVYYDPNES 490 (641)
T ss_pred eEEEECcccc
Confidence 3456666543
No 469
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=34.86 E-value=36 Score=36.98 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=17.0
Q ss_pred CchHHHHHHHHHHHHHhcC
Q 043990 218 GLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g 236 (911)
|.|||-+++.+...+.+.|
T Consensus 11 GVGKTT~a~nLA~~La~~G 29 (273)
T PRK13232 11 GIGKSTTTQNLTAALSTMG 29 (273)
T ss_pred CCcHHHHHHHHHHHHHhhC
Confidence 7899999999999988776
No 470
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=34.79 E-value=39 Score=36.39 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.7
Q ss_pred CchHHHHHHHHHHHHHhcC
Q 043990 218 GLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g 236 (911)
|.|||-.+..+...+...|
T Consensus 11 GvGKTT~~~nLA~~La~~G 29 (270)
T cd02040 11 GIGKSTTTQNLSAALAEMG 29 (270)
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 7899999999999887765
No 471
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.65 E-value=63 Score=34.63 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=23.3
Q ss_pred cccCCCceEEEcCCCchHHHHHHHHHHH
Q 043990 204 NAAGIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 204 ~~~~~~G~ILADemGLGKTlqaIali~~ 231 (911)
......|.+|.-++|.|||+.+-++..+
T Consensus 177 GIaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 177 GIAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred CCCCCcceEEecCCCCchhHHHHHHHhh
Confidence 3456789999999999999988887654
No 472
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.51 E-value=21 Score=44.77 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=0.0
Q ss_pred CccccccccCCCCCCCCC-------------CCCCCCcccCCCCCCCCCCcccc
Q 043990 1 MEDDEEILSDSDPSDSSD-------------GYTIDREDADYNDDNDDGDDEAS 41 (911)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 41 (911)
++++|+..+++|++++.| .+++.++|||+|+|+.++++|+.
T Consensus 897 ~~~~e~~~~d~dD~d~~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~ 950 (1010)
T KOG1991|consen 897 DDEEEDFIDDEDDIDEDDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEEDEL 950 (1010)
T ss_pred CcchhhccCccccccccchhHHHhhccccccccccccccccccchhcccccccc
No 473
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.44 E-value=1.4e+02 Score=34.89 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=0.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCccc
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~ 290 (911)
.++.-..|.|||-++.-++..+.... ..++++++=-..-..=...+..|...
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~------G~~V~Lit~Dt~R~aA~eQLk~yAe~---------------------- 277 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHM------GKSVSLYTTDNYRIAAIEQLKRYADT---------------------- 277 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc------CCeEEEecccchhhhHHHHHHHHHHh----------------------
Q ss_pred CCCCCCccEEEEehHHHHhhccccccCCCCcEEEEc
Q 043990 291 TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICD 326 (911)
Q Consensus 291 ~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlD 326 (911)
..+-+.....+......+. ...+++||||
T Consensus 278 ------lgvp~~~~~~~~~l~~~l~-~~~~D~VLID 306 (432)
T PRK12724 278 ------MGMPFYPVKDIKKFKETLA-RDGSELILID 306 (432)
T ss_pred ------cCCCeeehHHHHHHHHHHH-hCCCCEEEEe
No 474
>PRK13236 nitrogenase reductase; Reviewed
Probab=34.33 E-value=38 Score=37.47 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 218 GLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
|.|||.+++.+.+.+.+.| +++|||
T Consensus 16 GVGKTt~a~NLA~~La~~G-------~rVLli 40 (296)
T PRK13236 16 GIGKSTTSQNTLAAMAEMG-------QRILIV 40 (296)
T ss_pred cCCHHHHHHHHHHHHHHCC-------CcEEEE
No 475
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=34.26 E-value=29 Score=33.54 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=0.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 043990 211 CILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~l 232 (911)
++|-+.+|+|||..+.++...+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
No 476
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=34.02 E-value=71 Score=37.52 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=0.0
Q ss_pred ccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHh
Q 043990 203 LNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWV 266 (911)
Q Consensus 203 l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~ 266 (911)
+......|.+|.-+.|+|||..+=++...+ ..+.+-|....++..|..+-.+..
T Consensus 212 ~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi~V~~seL~~k~~Ge~~~~v 265 (438)
T PTZ00361 212 IGIKPPKGVILYGPPGTGKTLLAKAVANET----------SATFLRVVGSELIQKYLGDGPKLV 265 (438)
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEEEEecchhhhhhcchHHHHH
No 477
>PHA02608 67 prohead core protein; Provisional
Probab=34.00 E-value=25 Score=30.39 Aligned_cols=35 Identities=37% Similarity=0.522 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccCCCCCCCCC
Q 043990 2 EDDEEILSDSDPSDSSDGYTIDREDADYNDDNDDG 36 (911)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (911)
|-+|..+.+++..+..+++.++.++++++++.+||
T Consensus 46 EGEe~ed~ddd~~~d~~~~~~~k~~dd~~dDedDE 80 (80)
T PHA02608 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80 (80)
T ss_pred cCCCCccccchhhhhhhcccccccccccccccccC
No 478
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=33.96 E-value=2.8e+02 Score=25.10 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCeEEEEE------cchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCc
Q 043990 526 RLLGHLRQRTDDRIVLVS------NYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599 (911)
Q Consensus 526 ~LL~~l~~~~~~KVIIFS------q~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkag 599 (911)
+.+..+.. .++|+||+ .+=..-..+.++|...|++|..++=......|..+...... ..-..+|+=.--.|
T Consensus 3 ~~v~~~i~--~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iG 79 (97)
T TIGR00365 3 ERIKEQIK--ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHhc--cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEe
Q ss_pred cc
Q 043990 600 GC 601 (911)
Q Consensus 600 g~ 601 (911)
|.
T Consensus 80 G~ 81 (97)
T TIGR00365 80 GC 81 (97)
T ss_pred Ch
No 479
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=33.96 E-value=96 Score=29.47 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhhcCCCeEEEEEc-chHHHHHHHHHHHHcCCCEEEEeCCC
Q 043990 518 SGKMHVLARLLGHLRQRTDDRIVLVSN-YTQTLDLFAQLCRERRYPYLRLDGTT 570 (911)
Q Consensus 518 S~Kl~~L~~LL~~l~~~~~~KVIIFSq-~~~~ld~L~~~L~~~gi~~~~LdGst 570 (911)
+.++..+...+....-..+++|||||+ .-.........|+..|+.+..|+|++
T Consensus 68 ~~~~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~ 121 (128)
T cd01520 68 SGKLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGY 121 (128)
T ss_pred hhhHHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcH
No 480
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=33.94 E-value=2.2e+02 Score=25.29 Aligned_cols=69 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHhhcCCCeEEEEEc------chHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcc
Q 043990 528 LGHLRQRTDDRIVLVSN------YTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGG 600 (911)
Q Consensus 528 L~~l~~~~~~KVIIFSq------~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg 600 (911)
|..+.. .++|+||+. +=..-..+.++|...|++|..++=....+.|..+.+.-....-+ ++.+.-+..|
T Consensus 1 ~~~~i~--~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP--~vfi~g~~iG 75 (90)
T cd03028 1 IKKLIK--ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFP--QLYVNGELVG 75 (90)
T ss_pred Chhhhc--cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCC--EEEECCEEEe
No 481
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=33.92 E-value=64 Score=34.88 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhc-CCCCCCCCceEEEE
Q 043990 189 REGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQ-GFDGKPMVKKAIIV 249 (911)
Q Consensus 189 ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~-g~~~~p~~~~~LIV 249 (911)
.+-..+|..++.+ .+..+++-++|+|||-+.-+++..+-.. . ++++|
T Consensus 114 ~~~~~~l~~~v~~------~~~ili~G~tGSGKTT~l~all~~i~~~~~--------~iv~i 161 (270)
T PF00437_consen 114 EEIAEFLRSAVRG------RGNILISGPTGSGKTTLLNALLEEIPPEDE--------RIVTI 161 (270)
T ss_dssp HHHHHHHHHCHHT------TEEEEEEESTTSSHHHHHHHHHHHCHTTTS--------EEEEE
T ss_pred HHHHHHHhhcccc------ceEEEEECCCccccchHHHHHhhhcccccc--------ceEEe
No 482
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=33.91 E-value=48 Score=35.32 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCC
Q 043990 218 GLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSS 296 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~ 296 (911)
|.|||-.++++...+..+| .+-+||=|-+ .-+..|.+...+-......+.++.......+......... ..
T Consensus 12 GaGKTT~~~~LAs~la~~G------~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~--~~ 83 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARG------ARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEA--SG 83 (231)
T ss_pred CCcHHHHHHHHHHHHHHCC------CeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHh--cC
Q ss_pred ccEEEEehHHHHhhccccccCCCCcEEEE
Q 043990 297 LQVLIVSYETFRMHSSKFSCSESCDLLIC 325 (911)
Q Consensus 297 ~~VvI~Sye~l~~~~~~~~~~~~~~lVIl 325 (911)
++++|+--+-.......+. ...-|+|||
T Consensus 84 ~d~VlvDleG~as~~~~~a-ia~sDlVlI 111 (231)
T PF07015_consen 84 FDFVLVDLEGGASELNDYA-IARSDLVLI 111 (231)
T ss_pred CCEEEEeCCCCCchhHHHH-HHHCCEEEE
No 483
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=33.89 E-value=5.1e+02 Score=26.13 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred cccchHHHH-HHHHHHHHhhc---CCCeEEEEEcchHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHhhcCCC
Q 043990 515 VELSGKMHV-LARLLGHLRQR---TDDRIVLVSNYTQTLDLFAQLCRER----RYPYLRLDGTTSISKRQKLVNHFNDPS 586 (911)
Q Consensus 515 ~~~S~Kl~~-L~~LL~~l~~~---~~~KVIIFSq~~~~ld~L~~~L~~~----gi~~~~LdGsts~~~R~~iv~~Fn~~~ 586 (911)
...+||... +..++..+... .+.++||++.....+..+...+... ++.+..++|+.+..++.+... ..
T Consensus 44 ~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 119 (203)
T cd00268 44 QTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RG 119 (203)
T ss_pred CCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CC
Q ss_pred CCceEEEEec---------CCcccccCCCCCCEEEEeCCCC--CcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHH
Q 043990 587 KNEFVFLLSS---------KAGGCGLNLIGGNRLVLFDPDW--NPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVY 655 (911)
Q Consensus 587 ~~~~v~LlSt---------kagg~GLNL~~An~VIl~Dp~W--NPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~ 655 (911)
.. ++++| ... +++...+.+|+=+.+. +.....+...-..+..+ .+..++.+-|+...+.
T Consensus 120 ~~---iiv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~----~~~~~~~SAT~~~~~~ 189 (203)
T cd00268 120 PH---IVVATPGRLLDLLERGK---LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK----DRQTLLFSATMPKEVR 189 (203)
T ss_pred CC---EEEEChHHHHHHHHcCC---CChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc----ccEEEEEeccCCHHHH
Q ss_pred HHHHHH
Q 043990 656 QRQMSK 661 (911)
Q Consensus 656 ~rq~~K 661 (911)
......
T Consensus 190 ~~~~~~ 195 (203)
T cd00268 190 DLARKF 195 (203)
T ss_pred HHHHHH
No 484
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=33.86 E-value=1.1e+02 Score=35.32 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEc-chHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCC
Q 043990 510 GDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSN-YTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKN 588 (911)
Q Consensus 510 ~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq-~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~ 588 (911)
+...-...++-|.++...+-.+.+ +|++||+... |-.+..++...+++.|+.+..++.........++.. ++..
T Consensus 77 g~~~~~afsSGmaAI~~~~l~ll~-~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~----~~tk 151 (396)
T COG0626 77 GGEDAFAFSSGMAAISTALLALLK-AGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE----PNTK 151 (396)
T ss_pred CCCcEEEecCcHHHHHHHHHHhcC-CCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc----cCce
Q ss_pred ceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 043990 589 EFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTI 650 (911)
Q Consensus 589 ~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTI 650 (911)
+|+++.|-||....+=+.++.|+-.... ..++..+|+
T Consensus 152 ----------------------~v~lEtPsNP~l~v~DI~~i~~~A~~~g---~~vvVDNTf 188 (396)
T COG0626 152 ----------------------LVFLETPSNPLLEVPDIPAIARLAKAYG---ALVVVDNTF 188 (396)
T ss_pred ----------------------EEEEeCCCCcccccccHHHHHHHHHhcC---CEEEEECCc
No 485
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=33.76 E-value=14 Score=45.81 Aligned_cols=63 Identities=11% Similarity=0.280 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCccccccCCCCChhhhhhhhhhhhhcCc
Q 043990 2 EDDEEILSDSDPSDSSDGYTIDREDADYNDDNDDGDDEASAADSAPSDEDRKSKNVDALVRGN 64 (911)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (911)
+.++..+.+.++++++++++.+.+++++|+|+++++++++......-..........+...++
T Consensus 440 ~~e~~aEteedeEeEe~edeeeeEEeedddEEEEeede~D~deeedve~~~e~~~~~~eeee~ 502 (713)
T PF03344_consen 440 PTESKAETEEDEEEEEDEDEEEEEEEEDDDEEEEEEDEEDEDEEEDVEGSQEDDKDDDEEEED 502 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
No 486
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=33.74 E-value=40 Score=36.27 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=0.0
Q ss_pred ccccCCCceEEEcCCCchHHHHHHHHHH
Q 043990 203 LNAAGIHGCILADDMGLGKTLQSIALLY 230 (911)
Q Consensus 203 l~~~~~~G~ILADemGLGKTlqaIali~ 230 (911)
+......|+++.-++|+|||+.+=+.+.
T Consensus 200 lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 200 LGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHHHHHH
No 487
>PRK12608 transcription termination factor Rho; Provisional
Probab=33.72 E-value=75 Score=36.44 Aligned_cols=101 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhcc
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSG 286 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~ 286 (911)
....++|.-+.|.|||..+..++..+..+.++ ...--++|--+..-+..+.+.+.. .+........
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~d--v~~vv~lIgER~~EV~df~~~i~~-------~Vvast~de~----- 197 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPE--VHLMVLLIDERPEEVTDMRRSVKG-------EVYASTFDRP----- 197 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCC--ceEEEEEecCCCCCHHHHHHHHhh-------hEEeecCCCC-----
Q ss_pred CcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCcccc
Q 043990 287 IDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331 (911)
Q Consensus 287 ~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~l 331 (911)
...-+..+.++......|.....--+||+||.+++
T Consensus 198 ----------~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 198 ----------PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
No 488
>PRK10436 hypothetical protein; Provisional
Probab=33.64 E-value=59 Score=38.46 Aligned_cols=41 Identities=27% Similarity=0.398 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~l 232 (911)
+-+.|.+.+..+...-.|+. +++-+||+|||-+..+++..+
T Consensus 202 ~~~~~~~~l~~~~~~~~Gli--------LvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLI--------LVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeE--------EEECCCCCChHHHHHHHHHhh
No 489
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=33.61 E-value=25 Score=42.03 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=0.0
Q ss_pred CccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCccccc
Q 043990 1 MEDDEEILSDSDPSDSSDGYTIDREDADYNDDNDDGDDEASA 42 (911)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (911)
||.-|..-+.++..++++|++.|++++.++-+.+|.++++++
T Consensus 884 me~~e~~gs~ee~~e~EeeeE~e~~ee~s~~~~~ds~sedEe 925 (952)
T KOG1834|consen 884 MEDYEKGGSIEEESEEEEEEETEDEEESSDSDSADSESEDEE 925 (952)
T ss_pred hHhcccCCcccccccccccccccccccccccccccCccchhh
No 490
>PRK14701 reverse gyrase; Provisional
Probab=33.57 E-value=1.9e+02 Score=39.87 Aligned_cols=78 Identities=5% Similarity=0.086 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH------cCCCEEEEeCCCCHHHHHHHHHhhcCCCCC
Q 043990 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE------RRYPYLRLDGTTSISKRQKLVNHFNDPSKN 588 (911)
Q Consensus 515 ~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~------~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~ 588 (911)
+..+||.. ...++.......+.++||.+..+..+..+...|.. .++....++|+++.+++.++++++..+..+
T Consensus 102 PTGsGKTl-~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~d 180 (1638)
T PRK14701 102 PTGMGKST-FGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFD 180 (1638)
T ss_pred cCCCCHHH-HHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q ss_pred ceEEEEec
Q 043990 589 EFVFLLSS 596 (911)
Q Consensus 589 ~~v~LlSt 596 (911)
+|++|
T Consensus 181 ---ILV~T 185 (1638)
T PRK14701 181 ---ILVTT 185 (1638)
T ss_pred ---EEEEC
No 491
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=33.50 E-value=17 Score=39.07 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccCCCCCCCCC
Q 043990 2 EDDEEILSDSDPSDSSDGYTIDREDADYNDDNDDG 36 (911)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (911)
++..+++.|++..++++++++|+++|++++++|++
T Consensus 115 ~~~~~~d~Dd~~~~~~~~~~sd~~~d~~ddeDd~~ 149 (244)
T PF04889_consen 115 EETRNIDADDSDDSEESDDESDDDSDDDDDEDDTA 149 (244)
T ss_pred hcccccccccccccccccccccccccccccchHHH
No 492
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=33.36 E-value=1.1e+02 Score=35.44 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=0.0
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE-eCchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhc
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV-TPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVS 285 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV-~P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~ 285 (911)
....+.+.-+.|.|||..+-.+...+....++ ...-++++ -+..-+..+.+.+.. .+++-..........
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfd---v~v~VlLIgER~~EVtDLqrsIlg------~Vvast~d~p~~~~~ 237 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPE---VELIVLLIDERPEEVTDMQRSVKG------EVVASTFDEPASRHV 237 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCc---eEEEEEEcCCCCccHHHHHHHhhc------eEEEecCCCChHHHH
Q ss_pred cCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCcccc
Q 043990 286 GIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331 (911)
Q Consensus 286 ~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~l 331 (911)
.+ .+.+......+.....--+|++||+|++
T Consensus 238 ~v----------------a~~v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 238 QV----------------AEMVIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HH----------------HHHHHHHHHHHHHcCCCeEEEEEChhHH
No 493
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=33.31 E-value=23 Score=39.88 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred CccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCccccccCCCCChhhhhhhhhhhh
Q 043990 1 MEDDEEILSDSDPSDSSDGYTIDREDADYNDDNDDGDDEASAADSAPSDEDRKSKNVDAL 60 (911)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (911)
.+++++.++|++.+..+.+++++++++|+++++++++.+.+..............+....
T Consensus 104 d~d~~~~d~Dd~~e~idv~~d~E~e~sDsEDEe~~~e~e~~~~~~~~~~~~~~d~e~~~~ 163 (324)
T PF05285_consen 104 DEDEEDDDSDDEGEWIDVESDEEDEESDSEDEEEEDEEEEEEDEEEKEKEEDSDEEEDEE 163 (324)
T ss_pred ccccccccccccCCcccccchhhhhhhcccccccccchhccchhhhhhhhhhcccchhhh
No 494
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=33.12 E-value=66 Score=33.72 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=0.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
..++-+.|.|||..++.+++.....+ .+++.|.
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~-------~~v~yi~ 58 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNG-------KKVIYID 58 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEE
No 495
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=33.06 E-value=62 Score=33.66 Aligned_cols=32 Identities=31% Similarity=0.276 Sum_probs=0.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
.+++-+.|+|||..++.++.....++ .+++.+
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~~~~~g-------~~v~yi 53 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAGQG-------KKVAYI 53 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEE
No 496
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=33.05 E-value=8.5e+02 Score=29.67 Aligned_cols=139 Identities=10% Similarity=0.001 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEE
Q 043990 514 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFL 593 (911)
Q Consensus 514 ~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~L 593 (911)
.+..+|| .+.-++..+.. +..+||.+..+..+.-....|...|++...++|+++..++..+......+..+ +++
T Consensus 35 ~PTG~GK--Tl~y~lpal~~--~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~--il~ 108 (591)
T TIGR01389 35 MPTGGGK--SLCYQVPALLL--KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELK--LLY 108 (591)
T ss_pred cCCCccH--hHHHHHHHHHc--CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCC--EEE
Q ss_pred EecCCccc-----ccCCCCCCEEEEeCCC------CCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHH
Q 043990 594 LSSKAGGC-----GLNLIGGNRLVLFDPD------WNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQ 658 (911)
Q Consensus 594 lStkagg~-----GLNL~~An~VIl~Dp~------WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq 658 (911)
++...... -++....+.||+=+.+ .+..-..++++.....-...++...--.....+.+.|....
T Consensus 109 ~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l 184 (591)
T TIGR01389 109 VAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELL 184 (591)
T ss_pred EChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHc
No 497
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=32.92 E-value=84 Score=35.49 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
+..-..|+..++ ....+.+++-++|+|||-..-+++..+ |...++++|
T Consensus 146 ~~~~~~~L~~~v------~~~~nili~G~tgSGKTTll~aL~~~i--------p~~~ri~ti 193 (332)
T PRK13900 146 EKKIKEFLEHAV------ISKKNIIISGGTSTGKTTFTNAALREI--------PAIERLITV 193 (332)
T ss_pred hHHHHHHHHHHH------HcCCcEEEECCCCCCHHHHHHHHHhhC--------CCCCeEEEe
No 498
>PRK10490 sensor protein KdpD; Provisional
Probab=32.92 E-value=1.4e+02 Score=38.63 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCccc
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~ 290 (911)
..|+...|.|||+.++.-...+..+|.+ +.+-.+....+.+....+..+
T Consensus 27 i~~g~~~gvgkt~~ml~~a~~~~~~g~d-------------------------------vv~g~~e~h~r~~t~~~~~~l 75 (895)
T PRK10490 27 IFFGACAGVGKTYAMLQEAQRLRAQGLD-------------------------------VLVGVVETHGRKETAALLEGL 75 (895)
T ss_pred EEeecCCCCCHHHHHHHHHHHHHhCCCc-------------------------------EEEEEeeCCCCHHHHHHhcCC
Q ss_pred C-CCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhcc--CCHHHHHHhhhhcCCCCCCCHHHHHHH
Q 043990 291 T-DPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR--NDLEEFFAMVNFTNPGILGDAAYFRRY 367 (911)
Q Consensus 291 ~-~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~~--N~l~El~sLl~fl~P~~l~~~~~F~~~ 367 (911)
. .+.........+++-+ +.+... ..+++++++||--|-.-+.+...+ -+++||..
T Consensus 76 ~~~p~~~~~~~~~~~~e~--d~~~~l-~~~p~~~lvdelah~n~~g~~~~kr~qdv~~ll~------------------- 133 (895)
T PRK10490 76 TVLPPKRIHHRGRHISEF--DLDAAL-ARRPALILMDELAHSNAPGSRHPKRWQDVEELLE------------------- 133 (895)
T ss_pred CcCCCeeEeECCeecccc--CHHHHH-hCCCCEEEEeccccCCCCCCCCCccHhhHHHHHH-------------------
Q ss_pred HhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHH
Q 043990 368 YETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQ 431 (911)
Q Consensus 368 f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q 431 (911)
.|-+-..+-..+++ +.|+..+..+.=-+.++.+...+=..-..++.++++|.+
T Consensus 134 ------~gi~v~tt~n~qh~-----esl~~~v~~~t~~~~~e~~pd~~~~~a~~~~~vd~~p~~ 186 (895)
T PRK10490 134 ------AGIDVFTTVNVQHL-----ESLNDVVGGVTGIQVRETVPDPFFDAADEVVLVDLPPDD 186 (895)
T ss_pred ------CCCeEEeechHHHh-----hhhHHHHHHccCCccCCcCCHHHHhhcCeEEEecCCHHH
No 499
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=32.77 E-value=62 Score=34.15 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=0.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
.+++-++|+|||-.+|++...+ ..+++++
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~----------g~pvI~~ 32 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKT----------GAPVISL 32 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH------------EEEEE
T ss_pred EEEECCCCCChhHHHHHHHHHh----------CCCEEEe
No 500
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.68 E-value=4.3e+02 Score=28.53 Aligned_cols=121 Identities=19% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHH
Q 043990 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNW 258 (911)
Q Consensus 180 l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW 258 (911)
|.+++-|.-.+-|.-++= ..|++|++-....-+---+++.++|..+-.-..+ .-++||++-+ -=+.-|
T Consensus 136 LRRtfe~~hae~v~~WFF-------~qGGRGA~~S~GSRlqNiLvasa~isIL~~LYGd----r~~tLVLA~~PERLGEW 204 (283)
T PF11285_consen 136 LRRTFEPIHAERVEDWFF-------NQGGRGAQRSMGSRLQNILVASAAISILGELYGD----RFQTLVLANSPERLGEW 204 (283)
T ss_pred HHhcccHHHHHHHHHHHh-------ccCCCcccccccchHHHHHHHHHHHHHHHHHhcc----ceeeeeecCChhHHHHH
Q ss_pred HHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccc
Q 043990 259 EAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHR 330 (911)
Q Consensus 259 ~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~ 330 (911)
.+-+...++ +..-.-...+.-|++-+.+.+....+++......-+||||++..
T Consensus 205 RRGLQDcLG-------------------i~R~DFGP~~GivLFE~~daL~qrADRL~~~~~lPlIiID~aE~ 257 (283)
T PF11285_consen 205 RRGLQDCLG-------------------ISREDFGPNSGIVLFERPDALIQRADRLEERGELPLIIIDAAEE 257 (283)
T ss_pred HHHHHHhhC-------------------CCccccCCCcceEEeeCcHHHHHHHHHHHhcCCCCEEEEccchh
Done!