Query 043990
Match_columns 911
No_of_seqs 594 out of 2702
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 17:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 4.3E-93 1.5E-97 861.2 45.7 578 171-807 43-642 (644)
2 3mwy_W Chromo domain-containin 100.0 4.1E-70 1.4E-74 675.9 31.7 475 180-697 233-735 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 4.5E-66 1.5E-70 607.9 36.0 445 177-697 31-498 (500)
4 3dmq_A RNA polymerase-associat 100.0 1.2E-45 4.1E-50 464.0 24.8 419 180-664 150-631 (968)
5 1z5z_A Helicase of the SNF2/RA 100.0 3.2E-44 1.1E-48 388.4 23.6 255 403-697 13-269 (271)
6 1wp9_A ATP-dependent RNA helic 100.0 2.8E-41 9.7E-46 390.8 30.0 428 182-666 8-493 (494)
7 2fwr_A DNA repair protein RAD2 100.0 4.1E-38 1.4E-42 367.3 13.4 374 182-665 92-471 (472)
8 4a2p_A RIG-I, retinoic acid in 100.0 4.6E-34 1.6E-38 338.6 26.2 437 182-670 6-529 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 2.3E-33 7.9E-38 347.6 28.0 438 181-670 246-770 (797)
10 3tbk_A RIG-I helicase domain; 100.0 1.3E-32 4.6E-37 325.5 30.9 432 183-668 4-526 (555)
11 4a2w_A RIG-I, retinoic acid in 100.0 2.5E-33 8.5E-38 351.7 25.4 435 181-666 246-766 (936)
12 3hgt_A HDA1 complex subunit 3; 100.0 3.7E-32 1.3E-36 294.9 20.0 214 415-659 20-248 (328)
13 4gl2_A Interferon-induced heli 100.0 1.7E-31 5.9E-36 326.3 22.6 143 518-667 380-538 (699)
14 2oca_A DAR protein, ATP-depend 100.0 4.8E-31 1.6E-35 310.5 20.9 346 182-655 112-465 (510)
15 2ykg_A Probable ATP-dependent 100.0 1.5E-30 5.1E-35 317.8 26.0 131 517-654 378-522 (696)
16 1xti_A Probable ATP-dependent 100.0 1.5E-28 5E-33 278.2 29.8 318 183-642 30-353 (391)
17 1hv8_A Putative ATP-dependent 100.0 2.1E-28 7.1E-33 273.8 27.2 314 183-648 28-345 (367)
18 1s2m_A Putative ATP-dependent 100.0 3.5E-28 1.2E-32 276.3 29.0 318 183-648 43-365 (400)
19 3h1t_A Type I site-specific re 100.0 4.7E-29 1.6E-33 299.1 22.7 348 181-645 176-558 (590)
20 2j0s_A ATP-dependent RNA helic 100.0 8.3E-28 2.9E-32 274.3 28.2 320 183-648 59-383 (410)
21 2z0m_A 337AA long hypothetical 100.0 1.7E-28 5.9E-33 271.4 21.7 314 183-658 16-334 (337)
22 3pey_A ATP-dependent RNA helic 100.0 7.4E-27 2.5E-31 263.9 30.1 316 183-642 27-352 (395)
23 2db3_A ATP-dependent RNA helic 100.0 1.1E-26 3.7E-31 268.3 29.8 321 183-642 78-403 (434)
24 1fuu_A Yeast initiation factor 99.9 8.6E-29 2.9E-33 280.2 9.2 314 183-642 43-362 (394)
25 3eiq_A Eukaryotic initiation f 99.9 7E-27 2.4E-31 266.5 22.8 320 183-648 62-387 (414)
26 2i4i_A ATP-dependent RNA helic 99.9 1.6E-26 5.4E-31 264.0 25.2 325 183-647 37-382 (417)
27 3fht_A ATP-dependent RNA helic 99.9 2.4E-25 8.1E-30 253.4 32.2 331 182-658 46-388 (412)
28 3sqw_A ATP-dependent RNA helic 99.9 1.4E-25 4.9E-30 268.2 26.9 337 183-642 43-394 (579)
29 3i5x_A ATP-dependent RNA helic 99.9 3.2E-25 1.1E-29 264.0 25.5 342 183-648 94-449 (563)
30 3oiy_A Reverse gyrase helicase 99.9 7.8E-24 2.7E-28 242.3 27.2 333 183-661 21-374 (414)
31 1oyw_A RECQ helicase, ATP-depe 99.9 7.7E-24 2.6E-28 249.8 24.9 311 183-642 25-339 (523)
32 2v1x_A ATP-dependent DNA helic 99.9 1.3E-23 4.5E-28 250.8 26.3 318 183-642 44-370 (591)
33 3fmp_B ATP-dependent RNA helic 99.9 2E-25 6.8E-30 260.6 10.2 317 183-642 114-442 (479)
34 3l9o_A ATP-dependent RNA helic 99.9 2.9E-23 9.8E-28 263.1 27.1 126 522-650 427-599 (1108)
35 3fho_A ATP-dependent RNA helic 99.9 4E-24 1.4E-28 251.7 13.9 316 183-642 141-466 (508)
36 2xgj_A ATP-dependent RNA helic 99.9 3.3E-22 1.1E-26 251.3 31.0 344 183-649 86-500 (1010)
37 2eyq_A TRCF, transcription-rep 99.9 7.3E-23 2.5E-27 260.7 24.5 311 182-647 602-921 (1151)
38 2p6r_A Afuhel308 helicase; pro 99.9 2.6E-21 9E-26 236.5 26.3 328 183-652 25-392 (702)
39 2zj8_A DNA helicase, putative 99.9 1.1E-20 3.7E-25 231.6 27.4 115 535-652 236-391 (720)
40 1gm5_A RECG; helicase, replica 99.9 9.4E-22 3.2E-26 240.1 17.2 311 183-642 368-693 (780)
41 2va8_A SSO2462, SKI2-type heli 99.9 2.5E-20 8.7E-25 228.2 26.8 327 183-649 30-409 (715)
42 4a4z_A Antiviral helicase SKI2 99.8 3.3E-20 1.1E-24 233.1 24.8 133 519-658 322-502 (997)
43 4ddu_A Reverse gyrase; topoiso 99.8 1.6E-18 5.6E-23 219.6 22.2 298 183-618 78-388 (1104)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.8E-18 6.1E-23 216.5 22.1 137 182-332 270-414 (1038)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 2E-18 6.7E-23 218.7 21.8 321 184-663 58-467 (1054)
46 1t5i_A C_terminal domain of A 99.8 6E-18 2.1E-22 170.1 14.8 120 517-642 15-134 (172)
47 2hjv_A ATP-dependent RNA helic 99.8 5.9E-18 2E-22 168.5 14.2 133 516-658 18-150 (163)
48 2jgn_A DBX, DDX3, ATP-dependen 99.7 3.7E-18 1.3E-22 173.8 11.3 126 516-648 28-153 (185)
49 1tf5_A Preprotein translocase 99.7 2.7E-17 9.2E-22 197.9 20.1 120 516-641 413-540 (844)
50 2fsf_A Preprotein translocase 99.7 2.2E-16 7.5E-21 189.5 23.1 122 515-642 421-579 (853)
51 2p6n_A ATP-dependent RNA helic 99.7 1.6E-17 5.3E-22 170.1 11.3 123 517-648 39-161 (191)
52 2v6i_A RNA helicase; membrane, 99.7 1.4E-16 4.9E-21 183.4 20.0 100 535-642 170-287 (431)
53 1fuk_A Eukaryotic initiation f 99.7 2.8E-17 9.7E-22 163.9 12.1 124 519-650 16-139 (165)
54 2z83_A Helicase/nucleoside tri 99.7 1.5E-16 5E-21 184.7 17.9 106 535-649 189-314 (459)
55 1nkt_A Preprotein translocase 99.7 1.4E-15 4.8E-20 182.8 26.2 121 515-641 440-612 (922)
56 3rc3_A ATP-dependent RNA helic 99.7 1.6E-16 5.6E-21 191.2 17.9 108 538-647 322-444 (677)
57 2jlq_A Serine protease subunit 99.7 4.5E-16 1.6E-20 180.2 21.0 99 535-641 187-306 (451)
58 2rb4_A ATP-dependent RNA helic 99.7 2.3E-16 8E-21 158.8 13.9 123 519-649 20-148 (175)
59 3eaq_A Heat resistant RNA depe 99.7 3.2E-16 1.1E-20 163.0 15.0 124 517-648 15-138 (212)
60 1yks_A Genome polyprotein [con 99.7 7.3E-16 2.5E-20 177.9 18.9 99 535-641 176-294 (440)
61 2xau_A PRE-mRNA-splicing facto 99.7 1E-15 3.4E-20 187.9 19.6 122 526-650 293-445 (773)
62 2wv9_A Flavivirin protease NS2 99.7 7.5E-16 2.6E-20 185.8 17.7 99 535-641 409-528 (673)
63 2yjt_D ATP-dependent RNA helic 99.5 8.3E-18 2.8E-22 168.7 0.0 119 518-642 15-133 (170)
64 4f92_B U5 small nuclear ribonu 99.6 1.5E-14 5.1E-19 189.8 26.7 131 182-334 925-1061(1724)
65 2whx_A Serine protease/ntpase/ 99.6 3.6E-15 1.2E-19 178.7 18.8 103 535-646 354-476 (618)
66 1c4o_A DNA nucleotide excision 99.6 9.6E-14 3.3E-18 167.8 29.0 125 518-649 422-551 (664)
67 4f92_B U5 small nuclear ribonu 99.6 1.8E-14 6.2E-19 189.1 24.1 135 182-333 78-221 (1724)
68 3o8b_A HCV NS3 protease/helica 99.6 1.1E-14 3.9E-19 173.5 18.2 101 535-650 395-516 (666)
69 1rif_A DAR protein, DNA helica 99.6 2.2E-15 7.4E-20 163.4 11.0 127 182-334 112-240 (282)
70 3i32_A Heat resistant RNA depe 99.6 6.7E-15 2.3E-19 160.8 13.7 125 517-649 12-136 (300)
71 3jux_A Protein translocase sub 99.5 1.4E-12 4.8E-17 153.8 26.6 121 515-641 454-582 (822)
72 3b6e_A Interferon-induced heli 99.5 2.7E-14 9.2E-19 147.4 7.3 136 182-333 32-176 (216)
73 2fz4_A DNA repair protein RAD2 99.4 2.7E-13 9.2E-18 143.3 11.3 114 182-334 92-207 (237)
74 2pl3_A Probable ATP-dependent 99.4 6.8E-13 2.3E-17 139.5 13.5 135 183-334 47-186 (236)
75 2gxq_A Heat resistant RNA depe 99.4 4.5E-13 1.5E-17 137.5 11.6 132 183-332 23-157 (207)
76 1qde_A EIF4A, translation init 99.4 2.8E-12 9.5E-17 133.5 13.3 131 183-334 36-170 (224)
77 1q0u_A Bstdead; DEAD protein, 99.4 4.4E-12 1.5E-16 131.8 14.1 132 183-334 26-165 (219)
78 1t6n_A Probable ATP-dependent 99.4 2.3E-12 7.9E-17 133.8 11.5 131 183-332 36-171 (220)
79 1vec_A ATP-dependent RNA helic 99.3 4.8E-12 1.6E-16 129.8 13.1 131 183-333 25-160 (206)
80 1wrb_A DJVLGB; RNA helicase, D 99.3 6.2E-12 2.1E-16 133.7 14.0 134 183-332 45-187 (253)
81 2oxc_A Probable ATP-dependent 99.3 3.1E-12 1E-16 134.2 11.1 131 183-333 46-180 (230)
82 3ber_A Probable ATP-dependent 99.3 4.3E-12 1.5E-16 135.0 12.1 131 183-333 65-200 (249)
83 3iuy_A Probable ATP-dependent 99.3 6.4E-12 2.2E-16 131.3 12.9 136 183-334 42-182 (228)
84 3dkp_A Probable ATP-dependent 99.3 7.6E-12 2.6E-16 132.2 12.5 133 183-332 51-188 (245)
85 3bor_A Human initiation factor 99.3 1.4E-11 4.8E-16 129.8 13.3 132 183-333 52-187 (237)
86 2vl7_A XPD; helicase, unknown 99.3 1.1E-10 3.9E-15 137.9 21.8 92 522-620 370-465 (540)
87 3ly5_A ATP-dependent RNA helic 99.2 2.3E-11 7.8E-16 130.4 11.9 134 183-332 76-214 (262)
88 3fe2_A Probable ATP-dependent 99.2 4.5E-11 1.5E-15 126.2 12.9 135 183-333 51-190 (242)
89 2d7d_A Uvrabc system protein B 99.1 3.2E-10 1.1E-14 137.0 16.8 125 518-649 428-557 (661)
90 3fmo_B ATP-dependent RNA helic 99.0 1.2E-09 4.2E-14 119.4 14.1 130 182-331 113-247 (300)
91 2ipc_A Preprotein translocase 99.0 4.5E-08 1.5E-12 117.9 25.4 119 185-332 81-215 (997)
92 3crv_A XPD/RAD3 related DNA he 98.5 2.9E-07 9.8E-12 109.0 12.8 137 183-336 3-189 (551)
93 3llm_A ATP-dependent RNA helic 98.4 5.7E-07 2E-11 94.3 10.7 127 183-331 61-188 (235)
94 4a15_A XPD helicase, ATP-depen 97.9 1.5E-05 5.1E-10 95.5 9.5 82 183-276 3-86 (620)
95 4b3f_X DNA-binding protein smu 97.1 0.0012 4.2E-08 79.4 10.5 69 181-265 187-256 (646)
96 2gk6_A Regulator of nonsense t 96.7 0.0048 1.7E-07 73.8 11.3 67 182-264 179-246 (624)
97 2xzl_A ATP-dependent helicase 96.4 0.0067 2.3E-07 74.5 9.8 68 182-265 359-427 (802)
98 2wjy_A Regulator of nonsense t 96.2 0.014 4.8E-07 71.6 11.1 66 182-263 355-421 (800)
99 3upu_A ATP-dependent DNA helic 96.1 0.025 8.6E-07 64.9 11.9 63 183-256 25-87 (459)
100 3e1s_A Exodeoxyribonuclease V, 95.9 0.039 1.3E-06 65.2 12.9 64 181-261 187-250 (574)
101 2j9r_A Thymidine kinase; TK1, 95.4 0.04 1.4E-06 56.4 8.7 34 213-253 33-66 (214)
102 1w36_D RECD, exodeoxyribonucle 95.0 0.044 1.5E-06 65.3 8.9 67 186-265 152-219 (608)
103 2b8t_A Thymidine kinase; deoxy 94.3 0.14 4.8E-06 52.8 9.6 34 212-252 16-49 (223)
104 1xx6_A Thymidine kinase; NESG, 94.1 0.1 3.5E-06 52.5 7.8 34 212-252 12-45 (191)
105 2orw_A Thymidine kinase; TMTK, 93.5 0.11 3.9E-06 51.7 6.8 34 212-252 7-40 (184)
106 4a15_A XPD helicase, ATP-depen 92.6 0.27 9.2E-06 58.6 9.5 112 523-641 435-579 (620)
107 2o0j_A Terminase, DNA packagin 92.4 1.2 4.3E-05 49.5 13.9 70 182-266 162-232 (385)
108 3vkw_A Replicase large subunit 91.9 0.29 9.9E-06 55.5 8.0 85 208-331 161-246 (446)
109 3e2i_A Thymidine kinase; Zn-bi 91.9 0.33 1.1E-05 49.6 7.6 35 212-253 32-66 (219)
110 2orv_A Thymidine kinase; TP4A 91.5 0.19 6.5E-06 52.0 5.5 34 212-252 23-56 (234)
111 2d7d_A Uvrabc system protein B 91.1 0.45 1.6E-05 57.1 9.2 69 186-269 15-84 (661)
112 1a5t_A Delta prime, HOLB; zinc 90.3 0.39 1.3E-05 52.4 7.0 50 184-236 3-52 (334)
113 2p65_A Hypothetical protein PF 89.7 0.72 2.5E-05 44.5 7.8 28 207-234 42-69 (187)
114 3cpe_A Terminase, DNA packagin 89.6 1.8 6.1E-05 51.1 12.5 71 182-267 162-233 (592)
115 1jbk_A CLPB protein; beta barr 89.0 0.76 2.6E-05 44.4 7.4 28 207-234 42-69 (195)
116 3lfu_A DNA helicase II; SF1 he 88.2 1.5 5.1E-05 52.1 10.6 73 180-267 6-79 (647)
117 3syl_A Protein CBBX; photosynt 83.6 0.45 1.5E-05 50.8 2.5 30 207-236 66-95 (309)
118 3eie_A Vacuolar protein sortin 82.9 0.49 1.7E-05 51.2 2.5 25 208-232 51-75 (322)
119 3bos_A Putative DNA replicatio 82.8 1.7 5.8E-05 43.8 6.5 29 207-235 51-79 (242)
120 3h4m_A Proteasome-activating n 82.4 0.5 1.7E-05 49.9 2.2 26 206-231 49-74 (285)
121 2r6a_A DNAB helicase, replicat 82.0 1.7 5.8E-05 49.5 6.6 47 209-261 204-250 (454)
122 2qp9_X Vacuolar protein sortin 81.4 0.54 1.9E-05 51.8 2.1 26 207-232 83-108 (355)
123 3te6_A Regulatory protein SIR3 80.1 7.7 0.00026 41.9 10.7 47 185-235 25-72 (318)
124 2chg_A Replication factor C sm 79.8 4.3 0.00015 39.9 8.1 27 209-235 39-65 (226)
125 3vfd_A Spastin; ATPase, microt 79.7 0.99 3.4E-05 50.2 3.5 41 208-258 148-188 (389)
126 2q6t_A DNAB replication FORK h 78.3 1.7 5.9E-05 49.3 5.1 48 210-263 202-249 (444)
127 1xwi_A SKD1 protein; VPS4B, AA 77.7 0.76 2.6E-05 49.9 1.8 26 207-232 44-69 (322)
128 1uaa_A REP helicase, protein ( 76.7 4.5 0.00015 48.3 8.4 68 184-267 3-72 (673)
129 2v1u_A Cell division control p 76.7 5.4 0.00018 43.4 8.4 29 206-234 42-70 (387)
130 2qby_B CDC6 homolog 3, cell di 76.1 2.9 9.9E-05 45.7 6.0 47 186-235 26-72 (384)
131 3u61_B DNA polymerase accessor 76.0 11 0.00039 40.1 10.6 24 209-232 49-72 (324)
132 1pjr_A PCRA; DNA repair, DNA r 75.0 7.5 0.00026 46.9 9.7 73 180-267 8-81 (724)
133 2qz4_A Paraplegin; AAA+, SPG7, 74.3 1.5 5.2E-05 45.2 2.9 26 207-232 38-63 (262)
134 2gno_A DNA polymerase III, gam 71.7 14 0.00048 39.5 9.9 40 188-231 2-41 (305)
135 2w58_A DNAI, primosome compone 71.6 9 0.00031 37.7 7.8 27 209-235 55-81 (202)
136 4b4t_J 26S protease regulatory 71.3 2.6 8.8E-05 47.2 4.0 50 206-265 180-229 (405)
137 3ec2_A DNA replication protein 71.2 7.1 0.00024 37.7 6.8 47 186-233 17-63 (180)
138 3kl4_A SRP54, signal recogniti 70.9 14 0.00048 41.6 10.0 26 211-236 100-125 (433)
139 3dm5_A SRP54, signal recogniti 70.8 14 0.00047 41.8 9.9 27 210-236 102-128 (443)
140 4dzz_A Plasmid partitioning pr 70.3 8.8 0.0003 37.6 7.5 75 217-331 11-87 (206)
141 1fnn_A CDC6P, cell division co 69.5 8.6 0.00029 41.8 7.8 23 210-232 46-68 (389)
142 1gm5_A RECG; helicase, replica 69.3 15 0.00053 44.6 10.6 98 516-617 398-500 (780)
143 4b4t_M 26S protease regulatory 69.3 2.5 8.6E-05 47.8 3.4 49 206-264 213-261 (434)
144 4b4t_L 26S protease subunit RP 69.2 2.5 8.5E-05 47.9 3.3 49 206-264 213-261 (437)
145 2zts_A Putative uncharacterize 66.7 2.3 7.9E-05 43.3 2.3 47 210-262 32-78 (251)
146 1xp8_A RECA protein, recombina 66.6 11 0.00038 41.5 7.9 43 209-258 75-117 (366)
147 4b4t_I 26S protease regulatory 65.9 3.7 0.00013 46.3 3.8 49 206-264 214-262 (437)
148 1qvr_A CLPB protein; coiled co 64.8 12 0.00041 46.0 8.6 28 207-234 190-217 (854)
149 4b4t_K 26S protease regulatory 64.7 3.4 0.00012 46.6 3.3 47 206-262 204-250 (428)
150 3bh0_A DNAB-like replicative h 64.6 4.6 0.00016 43.5 4.2 48 210-264 70-117 (315)
151 3crv_A XPD/RAD3 related DNA he 64.4 27 0.00094 40.4 11.2 89 522-620 379-475 (551)
152 3bgw_A DNAB-like replicative h 63.5 3.5 0.00012 46.8 3.2 46 210-262 199-244 (444)
153 4b4t_H 26S protease regulatory 62.6 3.6 0.00012 46.8 2.9 49 206-264 241-289 (467)
154 4a1f_A DNAB helicase, replicat 62.6 2.2 7.5E-05 46.7 1.1 46 210-262 48-93 (338)
155 3oiy_A Reverse gyrase helicase 61.1 28 0.00095 38.3 10.0 95 516-613 45-145 (414)
156 2zr9_A Protein RECA, recombina 60.4 8.6 0.00029 42.1 5.5 42 210-258 63-104 (349)
157 3t15_A Ribulose bisphosphate c 59.7 8.4 0.00029 40.8 5.1 27 206-232 34-60 (293)
158 3pfi_A Holliday junction ATP-d 56.6 22 0.00077 37.9 8.0 25 207-231 54-78 (338)
159 2qgz_A Helicase loader, putati 56.0 20 0.00068 38.3 7.4 29 208-236 152-181 (308)
160 2kjq_A DNAA-related protein; s 54.6 10 0.00035 35.8 4.2 26 208-233 36-61 (149)
161 1r6b_X CLPA protein; AAA+, N-t 54.4 15 0.00053 44.3 6.9 28 207-234 206-233 (758)
162 3u4q_A ATP-dependent helicase/ 54.1 23 0.00077 45.5 8.6 70 182-264 9-79 (1232)
163 1w4r_A Thymidine kinase; type 53.6 12 0.00039 37.5 4.6 34 212-252 24-57 (195)
164 3hjh_A Transcription-repair-co 52.9 17 0.00059 41.5 6.5 66 535-615 381-446 (483)
165 3pvs_A Replication-associated 52.8 17 0.00058 41.1 6.4 24 208-231 50-73 (447)
166 3cf2_A TER ATPase, transitiona 50.2 7.3 0.00025 47.5 2.9 47 206-262 236-282 (806)
167 2ce7_A Cell division protein F 48.3 12 0.0004 42.9 4.1 25 207-231 48-72 (476)
168 1w5s_A Origin recognition comp 47.7 15 0.00051 40.3 4.9 26 209-234 51-78 (412)
169 1byi_A Dethiobiotin synthase; 47.3 18 0.00063 35.9 5.1 33 212-251 6-38 (224)
170 2l82_A Designed protein OR32; 45.8 52 0.0018 29.1 6.8 47 538-584 4-50 (162)
171 1wp9_A ATP-dependent RNA helic 44.6 71 0.0024 35.0 10.0 92 517-615 33-133 (494)
172 2eyq_A TRCF, transcription-rep 44.1 68 0.0023 40.8 10.6 94 517-613 634-731 (1151)
173 3eqz_A Response regulator; str 43.8 58 0.002 28.6 7.5 75 561-635 47-127 (135)
174 3uk6_A RUVB-like 2; hexameric 43.8 26 0.0009 37.7 6.0 45 186-232 50-94 (368)
175 3cg4_A Response regulator rece 43.1 94 0.0032 27.5 8.9 25 537-561 8-32 (142)
176 3hr8_A Protein RECA; alpha and 43.0 25 0.00086 38.5 5.6 40 211-257 64-103 (356)
177 3io5_A Recombination and repai 42.2 60 0.002 35.0 8.2 40 211-255 31-70 (333)
178 4ddu_A Reverse gyrase; topoiso 42.0 63 0.0022 40.9 9.7 96 516-614 102-203 (1104)
179 2c9o_A RUVB-like 1; hexameric 41.2 29 0.00099 39.1 6.0 45 186-232 43-87 (456)
180 3a10_A Response regulator; pho 41.1 37 0.0013 29.1 5.5 89 536-631 25-115 (116)
181 2dr3_A UPF0273 protein PH0284; 40.9 42 0.0014 33.5 6.7 46 210-262 25-70 (247)
182 1l8q_A Chromosomal replication 40.8 36 0.0012 36.1 6.4 48 208-262 37-84 (324)
183 3of5_A Dethiobiotin synthetase 40.3 27 0.00094 35.4 5.1 26 212-237 9-34 (228)
184 1f9v_A Kinesin-like protein KA 39.9 25 0.00086 38.3 4.9 21 206-226 82-103 (347)
185 3grc_A Sensor protein, kinase; 39.9 55 0.0019 29.2 6.7 24 538-561 8-31 (140)
186 2j48_A Two-component sensor ki 39.8 24 0.00083 30.1 4.0 88 536-631 25-116 (119)
187 2zan_A Vacuolar protein sortin 39.3 23 0.00078 39.9 4.7 43 207-258 166-208 (444)
188 1t6n_A Probable ATP-dependent 39.0 1.9E+02 0.0064 28.2 11.1 94 517-615 61-166 (220)
189 3cf0_A Transitional endoplasmi 38.9 23 0.0008 37.4 4.5 26 206-231 47-72 (301)
190 3t0q_A AGR253WP; kinesin, alph 38.7 25 0.00084 38.4 4.6 21 206-226 83-104 (349)
191 3g5j_A Putative ATP/GTP bindin 38.1 40 0.0014 30.3 5.4 52 519-572 73-126 (134)
192 3lte_A Response regulator; str 37.3 42 0.0014 29.5 5.4 28 536-563 6-33 (132)
193 3qxc_A Dethiobiotin synthetase 37.0 34 0.0012 35.2 5.2 26 212-237 26-51 (242)
194 3i42_A Response regulator rece 36.9 36 0.0012 29.8 4.9 95 536-636 27-125 (127)
195 3cmu_A Protein RECA, recombina 36.8 31 0.0011 46.2 5.8 43 206-255 1425-1467(2050)
196 2jtq_A Phage shock protein E; 36.7 66 0.0023 26.5 6.2 48 524-571 29-76 (85)
197 4etp_A Kinesin-like protein KA 36.6 24 0.00084 39.3 4.3 21 206-226 138-159 (403)
198 3fgn_A Dethiobiotin synthetase 36.3 24 0.00083 36.6 3.9 26 212-237 31-56 (251)
199 2rep_A Kinesin-like protein KI 36.3 26 0.00089 38.7 4.4 22 206-227 113-135 (376)
200 3cmu_A Protein RECA, recombina 35.5 53 0.0018 44.0 7.7 45 208-259 732-776 (2050)
201 3ipz_A Monothiol glutaredoxin- 35.5 1.5E+02 0.0051 25.9 8.7 66 526-595 9-80 (109)
202 1g3q_A MIND ATPase, cell divis 35.2 31 0.0011 34.5 4.6 32 213-251 8-39 (237)
203 1d2n_A N-ethylmaleimide-sensit 35.2 91 0.0031 31.9 8.3 25 207-231 63-87 (272)
204 3kjh_A CO dehydrogenase/acetyl 35.0 19 0.00065 36.3 2.9 27 216-249 8-34 (254)
205 3k9g_A PF-32 protein; ssgcid, 34.3 25 0.00085 36.2 3.7 27 215-249 35-61 (267)
206 1hyq_A MIND, cell division inh 33.1 39 0.0013 34.5 4.9 32 212-250 7-38 (263)
207 3u4q_B ATP-dependent helicase/ 32.7 48 0.0017 42.2 6.6 43 216-262 9-51 (1166)
208 3d8b_A Fidgetin-like protein 1 32.6 24 0.00081 38.4 3.3 42 207-258 116-157 (357)
209 3cio_A ETK, tyrosine-protein k 32.5 68 0.0023 33.9 6.8 30 214-250 111-140 (299)
210 2r8r_A Sensor protein; KDPD, P 32.4 58 0.002 33.2 5.9 28 209-236 7-34 (228)
211 2zpa_A Uncharacterized protein 32.4 55 0.0019 38.9 6.5 52 183-252 175-226 (671)
212 3q9l_A Septum site-determining 32.3 37 0.0013 34.5 4.6 30 214-250 9-38 (260)
213 1cp2_A CP2, nitrogenase iron p 32.3 28 0.00094 35.8 3.6 21 216-236 9-29 (269)
214 3bfv_A CAPA1, CAPB2, membrane 32.0 75 0.0025 33.0 7.0 28 215-249 90-117 (271)
215 3zyw_A Glutaredoxin-3; metal b 31.8 1.9E+02 0.0065 25.4 8.7 66 526-595 7-78 (111)
216 3ber_A Probable ATP-dependent 30.9 2.8E+02 0.0097 27.8 11.2 91 517-613 90-192 (249)
217 3nwn_A Kinesin-like protein KI 30.7 33 0.0011 37.6 4.0 22 206-227 102-124 (359)
218 2ph1_A Nucleotide-binding prot 30.7 41 0.0014 34.5 4.6 31 213-250 24-54 (262)
219 3end_A Light-independent proto 30.6 31 0.0011 36.3 3.8 28 215-249 48-75 (307)
220 2owm_A Nckin3-434, related to 30.5 35 0.0012 38.5 4.3 22 206-227 134-156 (443)
221 3gx8_A Monothiol glutaredoxin- 30.3 2.4E+02 0.0081 25.2 9.3 66 526-595 7-81 (121)
222 1tue_A Replication protein E1; 30.1 29 0.001 35.0 3.1 25 208-232 58-82 (212)
223 2afh_E Nitrogenase iron protei 29.9 33 0.0011 35.8 3.8 21 216-236 10-30 (289)
224 2z4s_A Chromosomal replication 29.9 61 0.0021 36.3 6.2 46 208-258 130-175 (440)
225 3cf2_A TER ATPase, transitiona 29.9 19 0.00065 43.9 2.0 43 206-258 509-551 (806)
226 3zq6_A Putative arsenical pump 28.9 48 0.0016 35.4 4.9 34 212-252 18-51 (324)
227 2oxc_A Probable ATP-dependent 28.9 2E+02 0.0067 28.4 9.4 63 516-578 70-139 (230)
228 1x88_A Kinesin-like protein KI 28.7 36 0.0012 37.3 3.9 22 206-227 86-108 (359)
229 1u0j_A DNA replication protein 28.5 58 0.002 34.0 5.3 24 208-231 104-127 (267)
230 3dmn_A Putative DNA helicase; 28.3 2.2E+02 0.0074 27.1 9.2 78 522-618 48-125 (174)
231 1goj_A Kinesin, kinesin heavy 28.1 36 0.0012 37.2 3.8 22 206-227 78-100 (355)
232 2v1x_A ATP-dependent DNA helic 27.9 1.3E+02 0.0043 35.1 8.7 78 516-597 68-145 (591)
233 3dc4_A Kinesin-like protein NO 27.9 39 0.0013 36.7 3.9 20 206-225 92-112 (344)
234 3fwy_A Light-independent proto 27.5 38 0.0013 36.2 3.8 19 218-236 58-76 (314)
235 1bg2_A Kinesin; motor protein, 27.4 42 0.0014 36.1 4.1 22 206-227 75-97 (325)
236 3gbj_A KIF13B protein; kinesin 27.3 47 0.0016 36.2 4.5 22 206-227 90-112 (354)
237 3ug7_A Arsenical pump-driving 27.2 55 0.0019 35.4 5.0 32 212-250 30-61 (349)
238 2nr8_A Kinesin-like protein KI 26.7 43 0.0015 36.6 4.0 22 206-227 101-123 (358)
239 2y65_A Kinesin, kinesin heavy 26.6 44 0.0015 36.7 4.1 22 206-227 82-104 (365)
240 3pg5_A Uncharacterized protein 26.6 37 0.0013 37.0 3.5 25 218-249 12-36 (361)
241 2wbe_C Bipolar kinesin KRP-130 26.3 45 0.0015 36.7 4.1 22 206-227 98-120 (373)
242 2wem_A Glutaredoxin-related pr 26.2 2E+02 0.007 25.7 7.9 58 536-595 19-83 (118)
243 3ea0_A ATPase, para family; al 26.2 51 0.0017 33.0 4.3 22 214-235 11-32 (245)
244 3gk5_A Uncharacterized rhodane 26.2 43 0.0015 29.4 3.2 37 535-571 54-90 (108)
245 1t1v_A SH3BGRL3, SH3 domain-bi 26.1 1.2E+02 0.004 25.5 6.1 58 538-595 3-67 (93)
246 1u6t_A SH3 domain-binding glut 25.9 94 0.0032 28.4 5.5 45 539-583 2-53 (121)
247 3la6_A Tyrosine-protein kinase 25.8 59 0.002 34.2 4.8 32 212-250 97-128 (286)
248 4a14_A Kinesin, kinesin-like p 25.8 47 0.0016 36.1 4.1 21 206-226 81-102 (344)
249 3b6u_A Kinesin-like protein KI 25.7 46 0.0016 36.6 4.0 22 206-227 99-121 (372)
250 2zfi_A Kinesin-like protein KI 25.4 43 0.0015 36.7 3.7 22 206-227 87-109 (366)
251 1t5c_A CENP-E protein, centrom 25.3 37 0.0013 37.0 3.1 22 206-227 75-97 (349)
252 1v8k_A Kinesin-like protein KI 25.3 39 0.0013 37.7 3.4 22 206-227 152-174 (410)
253 2rjn_A Response regulator rece 25.1 1.3E+02 0.0043 27.2 6.6 62 536-605 7-69 (154)
254 3foj_A Uncharacterized protein 25.0 42 0.0014 28.9 2.9 37 535-571 55-91 (100)
255 1oyw_A RECQ helicase, ATP-depe 25.0 1.8E+02 0.0063 33.1 9.2 76 516-597 49-124 (523)
256 1xti_A Probable ATP-dependent 24.9 3.5E+02 0.012 28.6 11.2 92 517-613 55-158 (391)
257 1wcv_1 SOJ, segregation protei 24.9 46 0.0016 33.9 3.7 29 215-250 14-42 (257)
258 2vvg_A Kinesin-2; motor protei 24.7 44 0.0015 36.5 3.6 21 206-226 87-108 (350)
259 2woo_A ATPase GET3; tail-ancho 24.6 62 0.0021 34.7 4.8 32 212-250 23-54 (329)
260 3cmw_A Protein RECA, recombina 24.6 1.1E+02 0.0038 40.4 7.8 43 208-257 732-774 (1706)
261 1u94_A RECA protein, recombina 24.6 68 0.0023 35.0 5.1 38 209-253 64-101 (356)
262 3kto_A Response regulator rece 24.6 43 0.0015 29.9 3.1 29 536-564 6-34 (136)
263 2r44_A Uncharacterized protein 24.4 50 0.0017 35.0 4.0 24 209-232 47-70 (331)
264 3lre_A Kinesin-like protein KI 24.4 44 0.0015 36.5 3.6 22 206-227 103-125 (355)
265 1wv9_A Rhodanese homolog TT165 24.3 58 0.002 27.6 3.7 35 537-571 54-88 (94)
266 3nhm_A Response regulator; pro 23.9 2.9E+02 0.0097 23.8 8.6 94 535-634 26-123 (133)
267 2xj4_A MIPZ; replication, cell 23.8 53 0.0018 34.2 4.0 38 216-260 13-53 (286)
268 1lv7_A FTSH; alpha/beta domain 23.7 47 0.0016 33.8 3.5 25 208-232 45-69 (257)
269 3eme_A Rhodanese-like domain p 23.7 40 0.0014 29.1 2.6 37 535-571 55-91 (103)
270 1g41_A Heat shock protein HSLU 23.5 42 0.0014 37.9 3.2 26 207-232 49-74 (444)
271 2b4a_A BH3024; flavodoxin-like 23.5 3.1E+02 0.011 23.8 8.9 90 536-632 39-130 (138)
272 2w0m_A SSO2452; RECA, SSPF, un 23.4 1.2E+02 0.0042 29.5 6.6 37 210-253 25-61 (235)
273 3f6p_A Transcriptional regulat 23.4 1.4E+02 0.0047 25.7 6.2 25 559-583 45-69 (120)
274 2wul_A Glutaredoxin related pr 23.3 3.1E+02 0.01 24.7 8.5 49 536-584 19-74 (118)
275 3pxg_A Negative regulator of g 23.3 70 0.0024 36.1 5.1 28 207-234 200-227 (468)
276 2r62_A Cell division protease 23.3 35 0.0012 35.0 2.4 26 207-232 43-68 (268)
277 2pl3_A Probable ATP-dependent 23.2 3.1E+02 0.011 26.8 9.7 90 517-613 72-177 (236)
278 2oze_A ORF delta'; para, walke 23.0 1.1E+02 0.0039 31.6 6.5 28 215-249 44-71 (298)
279 2k0z_A Uncharacterized protein 23.0 1.4E+02 0.005 25.9 6.2 37 535-571 55-91 (110)
280 3hdv_A Response regulator; PSI 22.9 1.2E+02 0.0041 26.6 5.8 30 536-565 7-36 (136)
281 3ly5_A ATP-dependent RNA helic 22.8 4.8E+02 0.016 26.2 11.2 91 516-613 100-207 (262)
282 2yan_A Glutaredoxin-3; oxidore 22.8 3.5E+02 0.012 22.9 8.8 49 536-584 16-70 (105)
283 3eod_A Protein HNR; response r 22.8 89 0.0031 27.2 4.9 62 536-605 7-69 (130)
284 1dbw_A Transcriptional regulat 22.5 1.2E+02 0.0042 26.2 5.7 27 537-563 4-30 (126)
285 2h58_A Kinesin-like protein KI 22.3 39 0.0013 36.5 2.6 22 206-227 78-100 (330)
286 3fe2_A Probable ATP-dependent 22.2 4.3E+02 0.015 26.0 10.5 92 516-613 75-182 (242)
287 2j37_W Signal recognition part 22.1 2.6E+02 0.009 31.8 9.6 35 210-251 103-137 (504)
288 1gku_B Reverse gyrase, TOP-RG; 22.1 2E+02 0.0069 36.0 9.4 93 516-613 80-181 (1054)
289 2rdm_A Response regulator rece 22.1 1.8E+02 0.0061 25.1 6.8 20 616-635 106-125 (132)
290 1ofh_A ATP-dependent HSL prote 22.0 59 0.002 33.7 3.9 26 207-232 49-74 (310)
291 3u06_A Protein claret segregat 21.9 39 0.0013 37.7 2.6 22 206-227 136-158 (412)
292 1sxj_B Activator 1 37 kDa subu 21.9 2.4E+02 0.0081 29.0 8.8 25 210-234 44-68 (323)
293 3cob_A Kinesin heavy chain-lik 21.9 32 0.0011 37.8 1.8 21 206-226 77-98 (369)
294 2xxa_A Signal recognition part 21.7 82 0.0028 35.3 5.2 35 210-251 102-137 (433)
295 3bfn_A Kinesin-like protein KI 21.6 36 0.0012 37.6 2.2 22 206-227 96-118 (388)
296 3b9p_A CG5977-PA, isoform A; A 21.3 52 0.0018 34.2 3.3 25 207-231 53-77 (297)
297 3iwh_A Rhodanese-like domain p 21.3 48 0.0016 29.0 2.6 37 535-571 55-91 (103)
298 1g5t_A COB(I)alamin adenosyltr 21.3 99 0.0034 30.7 5.1 34 209-249 29-62 (196)
299 1gmx_A GLPE protein; transfera 21.2 79 0.0027 27.4 4.0 37 535-571 57-94 (108)
300 2heh_A KIF2C protein; kinesin, 20.7 53 0.0018 36.3 3.3 22 206-227 132-154 (387)
301 2gkg_A Response regulator homo 20.7 1E+02 0.0034 26.5 4.7 26 538-563 7-32 (127)
302 1njg_A DNA polymerase III subu 20.7 1.2E+02 0.0041 29.4 5.8 25 209-233 46-70 (250)
303 3iuy_A Probable ATP-dependent 20.6 2.6E+02 0.0088 27.3 8.3 92 516-613 66-173 (228)
304 3h5i_A Response regulator/sens 20.6 3.3E+02 0.011 23.8 8.5 25 537-561 6-30 (140)
305 2qr3_A Two-component system re 20.5 1.6E+02 0.0054 25.8 6.1 16 617-632 110-125 (140)
306 2qxy_A Response regulator; reg 20.4 1E+02 0.0035 27.3 4.8 16 617-632 105-120 (142)
307 1qde_A EIF4A, translation init 20.3 2.3E+02 0.0078 27.5 7.8 60 516-575 60-125 (224)
308 1q57_A DNA primase/helicase; d 20.2 98 0.0034 35.1 5.6 47 210-262 244-290 (503)
309 1e9r_A Conjugal transfer prote 20.1 87 0.003 34.7 5.0 39 209-254 54-92 (437)
310 3tj1_A RNA polymerase I-specif 20.0 23 0.00079 41.8 0.2 38 219-267 436-473 (649)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.3e-93 Score=861.23 Aligned_cols=578 Identities=48% Similarity=0.826 Sum_probs=486.9
Q ss_pred CcccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 171 ~~~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
.+.+.+||.+...|||||++||.||++++.|.. ..+.+||||||+||+|||+|+|++++.++.+++..+|..+++||||
T Consensus 43 ~~~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~-~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~ 121 (644)
T 1z3i_X 43 PVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRR-IENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVS 121 (644)
T ss_dssp CCCEECCHHHHTTCCHHHHHHHHHHHHHHTTSS-STTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEE
T ss_pred CceEeeChhhhhcccHHHHHHHHHHHHhhhccc-ccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEe
Confidence 356788999999999999999999999876532 2456789999999999999999999999998877777788999999
Q ss_pred CchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCC---CCCCccEEEEehHHHHhhccccccCCCCcEEEEcC
Q 043990 251 PTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTD---PCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDE 327 (911)
Q Consensus 251 P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~---~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDE 327 (911)
|++|+.||.+||.+|++..+.++.++++.+......+..+.. ....++|+|+||++++.+...+. ...|++|||||
T Consensus 122 P~sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~-~~~~~~vI~DE 200 (644)
T 1z3i_X 122 PSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLH-KGKVGLVICDE 200 (644)
T ss_dssp CHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTT-TSCCCEEEETT
T ss_pred cHHHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhh-cCCccEEEEEC
Confidence 999999999999999987666666666554332222111111 11346899999999988776654 56899999999
Q ss_pred ccccCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhh
Q 043990 328 AHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG 388 (911)
Q Consensus 328 AH~lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 388 (911)
||++||..++.++ |++.|||++++|++|+++++...|.+.|..|+..++...++..+...+
T Consensus 201 aH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 201 GHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp GGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred ceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 9999999876654 999999999999999999999999999999999999998888888889
Q ss_pred hhHHHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHh
Q 043990 389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLC 468 (911)
Q Consensus 389 ~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~Lrklc 468 (911)
..++.+|+.++.+|++||++.++..+||++.+.+++|+|++.|+.+|+.++........+.........+..++.||++|
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998765432222222223456788999999999
Q ss_pred cChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHH
Q 043990 469 NHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQT 548 (911)
Q Consensus 469 nhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ 548 (911)
+||.++......... .+..+...++..+. ........|+|+.+|..++..+....++|+||||+|+.+
T Consensus 361 ~hp~l~~~~~~~~~~---~~~~~~~~~~~~~~---------~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~ 428 (644)
T 1z3i_X 361 NHPALIYEKCLTGEE---GFDGALDLFPQNYS---------TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQT 428 (644)
T ss_dssp HCTHHHHHHHHHTCT---TCTTGGGTSCSSCC---------SSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHH
T ss_pred CCHHHHHHHHhcccc---hhhhHHhhcccccc---------ccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHH
Confidence 999999876543322 22233333332211 112234569999999999999876568999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHH
Q 043990 549 LDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA 628 (911)
Q Consensus 549 ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAig 628 (911)
+++|+.+|...|+++.+++|+++.++|++++++|+++....++||+|+++||+||||++|++||+|||+|||+.+.||+|
T Consensus 429 ~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~g 508 (644)
T 1z3i_X 429 LDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMA 508 (644)
T ss_dssp HHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999977767799999999999999999999999999999999999999
Q ss_pred hhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhccCCCchhhhhhhccc
Q 043990 629 RVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHC 708 (911)
Q Consensus 629 R~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~~~~~~~t~d~~~c 708 (911)
|+||+||+++|+||+|+++|||||+|+++|..|+.|+..++++.... ...|+.+||++||++.+++.|+|||.++|
T Consensus 509 R~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~----~~~~~~~~l~~Lf~~~~~~~~~t~~~~~c 584 (644)
T 1z3i_X 509 RVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDV----ERHFSLGELRELFSLNEKTLSDTHDRFRC 584 (644)
T ss_dssp TSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSC----CCSSCHHHHHHHTCCCSSCSCHHHHHHTC
T ss_pred hhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchh----hcCCCHHHHHHHhCCCCCccchhhhhhhC
Confidence 99999999999999999999999999999999999999888765332 46899999999999999999999999999
Q ss_pred cccccCCCCCCccCCCCCCCcCCCCCCccccccccccccccccccccccccccccCCCChhhcccCccCCCCCCCchHHH
Q 043990 709 TRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAIL 788 (911)
Q Consensus 709 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~h~~~~~~~~~~~~ 788 (911)
.+|.+.... .+ ++ .+...++||++|+||.+..++||.+|
T Consensus 585 ~~c~~~~~~------~~--~~---------------------------------~~~~~~~~~~~w~~~~~~~~~~~~~~ 623 (644)
T 1z3i_X 585 RRCVNGRQV------RP--PP---------------------------------DDSDCTCDLSNWHHCADKRGLRDPVL 623 (644)
T ss_dssp SSEETTEEC------SC--CC---------------------------------TTCCTTSCGGGSEEESSSTTCSCHHH
T ss_pred ccCCCCccc------CC--Ch---------------------------------hcccchhhhhhceeccccCCCCcHHH
Confidence 999864210 00 00 01124789999999999899999999
Q ss_pred HhccCCceEEEEEeccCCe
Q 043990 789 QASAGDEVTFVFTNQVDGK 807 (911)
Q Consensus 789 ~~~~~~~~~~~f~~~~~~~ 807 (911)
+++|.+.|||||+|+++..
T Consensus 624 ~~~~~~~~~~~~~~~~~~~ 642 (644)
T 1z3i_X 624 QASWDAAVSFVFHQRSHED 642 (644)
T ss_dssp HHHCSTTEEEEEEEESSCT
T ss_pred HHhhcCCeEEEEecccccc
Confidence 9998889999999999875
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-70 Score=675.93 Aligned_cols=475 Identities=29% Similarity=0.441 Sum_probs=362.8
Q ss_pred hhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHH
Q 043990 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWE 259 (911)
Q Consensus 180 l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~ 259 (911)
....|||||++||.||+... ...+||||||+||||||+|+|+++..++.... ..+|+|||||.+++.||.
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~~------~~~~~~ILademGlGKT~~ai~~i~~l~~~~~----~~~~~LIV~P~sll~qW~ 302 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFLW------SKGDNGILADEMGLGKTVQTVAFISWLIFARR----QNGPHIIVVPLSTMPAWL 302 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHHH------TTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS----CCSCEEEECCTTTHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHh------hcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC----CCCCEEEEECchHHHHHH
Confidence 35799999999999998643 34568899999999999999999988765432 246799999999999999
Q ss_pred HHHHHHhCCCeEEEEecCCcchhhh-ccCccc------CCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccC
Q 043990 260 AEIKKWVGGRVQLIALCESTRDDVV-SGIDSF------TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLK 332 (911)
Q Consensus 260 ~Ei~k~~~~~~~v~~~~~~~r~~~~-~~~~~~------~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lK 332 (911)
+||.+|++. +.++.+++....... .....+ ......++|+|+||+++......+. ...|++|||||||++|
T Consensus 303 ~E~~~~~p~-~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~-~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 303 DTFEKWAPD-LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELG-SIKWQFMAVDEAHRLK 380 (800)
T ss_dssp HHHHHHSTT-CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHH-TSEEEEEEETTGGGGC
T ss_pred HHHHHHCCC-ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHh-cCCcceeehhhhhhhc
Confidence 999999975 666666665443211 110000 1223567899999999988766655 5689999999999999
Q ss_pred Cccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHH
Q 043990 333 NDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSS 393 (911)
Q Consensus 333 N~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 393 (911)
|..++.++ |++.|||++++|+.|+.++....|...... ........
T Consensus 381 n~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~---------------~~~~~~~~ 445 (800)
T 3mwy_W 381 NAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD---------------EEQEEYIH 445 (800)
T ss_dssp CSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---------------THHHHHHH
T ss_pred CchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccc---------------hhHHHHHH
Confidence 99886654 999999999999999999877666422110 11234467
Q ss_pred HHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhh
Q 043990 394 ELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKL 473 (911)
Q Consensus 394 eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~L 473 (911)
.|+.++.++++||++.++...||++.+.+++|.|++.|+.+|+.++.................++..++.||++|+||.+
T Consensus 446 ~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l 525 (800)
T 3mwy_W 446 DLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYL 525 (800)
T ss_dssp HHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhh
Confidence 89999999999999999999999999999999999999999998865321111111122345688999999999999998
Q ss_pred hHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHH
Q 043990 474 IYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFA 553 (911)
Q Consensus 474 l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~ 553 (911)
+......... .+...... ........+..|+|+.+|.++|..+.. .++||||||+++.++++|+
T Consensus 526 ~~~~~~~~~~----------~~~~~~~~-----~~~~~~~l~~~s~K~~~L~~lL~~~~~-~g~kvLIFsq~~~~ld~L~ 589 (800)
T 3mwy_W 526 FDNAEERVLQ----------KFGDGKMT-----RENVLRGLIMSSGKMVLLDQLLTRLKK-DGHRVLIFSQMVRMLDILG 589 (800)
T ss_dssp SSSHHHHHCC----------CC----CC-----SHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCCEEEEESCHHHHHHHH
T ss_pred hcchHHHHHH----------hccccccc-----HHHHHHHhhhcChHHHHHHHHHHHHhh-CCCeEEEEechHHHHHHHH
Confidence 7533211000 00000000 000001124469999999999999876 6899999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhc
Q 043990 554 QLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRD 633 (911)
Q Consensus 554 ~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~Ri 633 (911)
.+|...|+++.+++|+|+..+|++++++|++++.+.++||+||++||+||||+.|++||+||++|||+.+.||+||+||+
T Consensus 590 ~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 669 (800)
T 3mwy_W 590 DYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRI 669 (800)
T ss_dssp HHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCS
T ss_pred HHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhc
Confidence 99999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccc-c-ccCCCCCHHHHHHhhccCCC
Q 043990 634 GQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSS-A-TQGNFLSTEDLRDLFTFHDD 697 (911)
Q Consensus 634 GQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~-~-~~~~~~s~~eL~~Lf~~~~~ 697 (911)
||+++|+||||+++|||||+|++++.+|..|...+++...... . .....++.++|.+|+.++..
T Consensus 670 GQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~ 735 (800)
T 3mwy_W 670 GQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAG 735 (800)
T ss_dssp SCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHSSCSS
T ss_pred CCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcchH
Confidence 9999999999999999999999999999999877765432111 1 12346899999999988764
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.5e-66 Score=607.95 Aligned_cols=445 Identities=29% Similarity=0.446 Sum_probs=367.5
Q ss_pred ChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhH
Q 043990 177 DPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVS 256 (911)
Q Consensus 177 ~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~ 256 (911)
|+.+...|||||++||.||.... ...+||||||+||+|||+++++++..+...+ ..+++|||||++|+.
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~------~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~-----~~~~~LIv~P~~l~~ 99 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMN------KLGFGICLADDMGLGKTLQTIAVFSDAKKEN-----ELTPSLVICPLSVLK 99 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHH------HTTCCEEECCCTTSCHHHHHHHHHHHHHHTT-----CCSSEEEEECSTTHH
T ss_pred ChhhhccchHHHHHHHHHHHHHh------hCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC-----CCCCEEEEccHHHHH
Confidence 67788899999999999997643 2346889999999999999999999887654 246899999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccc
Q 043990 257 NWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 257 qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
||.+|+.+|++. ..+..+++.... .....++|+|+||+++..... +. ...|++||+||||+++|..+
T Consensus 100 qw~~e~~~~~~~-~~v~~~~g~~~~----------~~~~~~~ivi~t~~~l~~~~~-l~-~~~~~~vIvDEaH~~kn~~~ 166 (500)
T 1z63_A 100 NWEEELSKFAPH-LRFAVFHEDRSK----------IKLEDYDIILTTYAVLLRDTR-LK-EVEWKYIVIDEAQNIKNPQT 166 (500)
T ss_dssp HHHHHHHHHCTT-SCEEECSSSTTS----------CCGGGSSEEEEEHHHHTTCHH-HH-TCCEEEEEEETGGGGSCTTS
T ss_pred HHHHHHHHHCCC-ceEEEEecCchh----------ccccCCcEEEeeHHHHhccch-hc-CCCcCEEEEeCccccCCHhH
Confidence 999999999975 555555554321 112356899999999976544 22 56899999999999999887
Q ss_pred hhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHH
Q 043990 337 LTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSA 397 (911)
Q Consensus 337 ~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~ 397 (911)
+.++ |++.|+|++++|++|+.+++...|.+.|..|+..+. .....+|..
T Consensus 167 ~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~------------~~~~~~l~~ 234 (500)
T 1z63_A 167 KIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD------------NMAKEELKA 234 (500)
T ss_dssp HHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC------------HHHHHHHHH
T ss_pred HHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc------------HHHHHHHHH
Confidence 5443 999999999999999999999999999999886532 234567899
Q ss_pred HhhHHhhhhcHHH--HhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHH-HhhhhhhHhhHHHHHHHHHHHhcChhhh
Q 043990 398 KVNQFILRRTNAL--LSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKR-AISEETKQSKILAYITALKKLCNHPKLI 474 (911)
Q Consensus 398 ~l~~~ilRRtk~~--v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~-~~~~~~~~~~~l~~l~~LrklcnhP~Ll 474 (911)
++.++++||++.+ +...||++.+..++|+|++.|+.+|+.+........ ..........++..+.+|+++|+||.++
T Consensus 235 ~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~ 314 (500)
T 1z63_A 235 IISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALL 314 (500)
T ss_dssp HHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHH
T ss_pred HHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHh
Confidence 9999999999865 667899999999999999999999998754321100 0011123456788899999999999987
Q ss_pred HhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHH
Q 043990 475 YDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQ 554 (911)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~ 554 (911)
.... .....++|+..+.+++..+.. .++|+||||+++.+++.|..
T Consensus 315 ~~~~----------------------------------~~~~~s~K~~~l~~~l~~~~~-~~~k~lvF~~~~~~~~~l~~ 359 (500)
T 1z63_A 315 KGGE----------------------------------QSVRRSGKMIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRN 359 (500)
T ss_dssp HCSC----------------------------------CCSTTCHHHHHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHH
T ss_pred cCcc----------------------------------chhhcchhHHHHHHHHHHHHc-cCCcEEEEEehHHHHHHHHH
Confidence 5310 113358999999999998876 68999999999999999999
Q ss_pred HHHHc-CCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhc
Q 043990 555 LCRER-RYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRD 633 (911)
Q Consensus 555 ~L~~~-gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~Ri 633 (911)
.|... |+.+.+++|+++.++|.+++++|+++. ...++|+|++++|+||||++|++||+||++|||+.+.||+||+||+
T Consensus 360 ~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~-~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~ 438 (500)
T 1z63_A 360 IIEKELNTEVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 438 (500)
T ss_dssp HHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCT-TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTT
T ss_pred HHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCC-CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHc
Confidence 99986 999999999999999999999999753 2347899999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhccCCC
Q 043990 634 GQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDD 697 (911)
Q Consensus 634 GQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~~~ 697 (911)
||+++|+||+|++.||+||+|++++..|..+.+.+++..... ...++.+||++||++...
T Consensus 439 Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~----~~~~~~~~l~~l~~~~~~ 498 (500)
T 1z63_A 439 GQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSW----ITELSTEELRKVIELSVG 498 (500)
T ss_dssp TTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGG----GGSSCHHHHHHHHSCCC-
T ss_pred CCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcCcch----hccCCHHHHHHHhccCCC
Confidence 999999999999999999999999999999998888764322 467999999999998653
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.2e-45 Score=463.99 Aligned_cols=419 Identities=20% Similarity=0.263 Sum_probs=305.9
Q ss_pred hhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHH
Q 043990 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWE 259 (911)
Q Consensus 180 l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~ 259 (911)
....|||||.+++.|++. ....||||||+||+|||+++++++..++..+ ..+++|||||++|+.||.
T Consensus 150 ~~~~LrpyQ~eav~~~l~--------~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-----~~~rvLIVvP~sLl~Qw~ 216 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGR--------RHAPRVLLADEVGLGKTIEAGMILHQQLLSG-----AAERVLIIVPETLQHQWL 216 (968)
T ss_dssp CSSCCCHHHHHHHHHHHH--------SSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-----SCCCEEEECCTTTHHHHH
T ss_pred CCCCCcHHHHHHHHHHHH--------hcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEeCHHHHHHHH
Confidence 456899999999999975 2246889999999999999999999988776 346899999999999999
Q ss_pred HHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCCccch
Q 043990 260 AEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 260 ~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
.|+.+|++.. +..+++........ ........++|+|+||+++...... ......|++|||||||+++|..+.
T Consensus 217 ~E~~~~f~l~--v~v~~~~~~~~~~~---~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~ 291 (968)
T 3dmq_A 217 VEMLRRFNLR--FALFDDERYAEAQH---DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDA 291 (968)
T ss_dssp HHHHHHSCCC--CEECCHHHHHHHHH---TTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTB
T ss_pred HHHHHHhCCC--EEEEccchhhhhhh---hcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCc
Confidence 9999998644 33444333221111 1123345678999999999765332 112468999999999999998765
Q ss_pred h---cc---------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhc---------cCCCCCCcH--
Q 043990 338 T---NR---------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSII---------CGREPTATE-- 382 (911)
Q Consensus 338 ~---~~---------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~---------~~~~~~~~~-- 382 (911)
. ++ |++.|+|+++.|+.|+.+++...|...+..... .+.......
T Consensus 292 ~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 371 (968)
T 3dmq_A 292 PSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELN 371 (968)
T ss_dssp CCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTT
T ss_pred chHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHH
Confidence 3 11 999999999999999999999999877543210 000000000
Q ss_pred --------------------HHHHhhhhHHHHHHHHh-----hHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHH
Q 043990 383 --------------------EEKKLGIERSSELSAKV-----NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNH 437 (911)
Q Consensus 383 --------------------~~~~~~~~~~~eL~~~l-----~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~ 437 (911)
........+...+..++ ..+++|+++..+. .+|.+....+.+.+++..+.+|..
T Consensus 372 ~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~ 450 (968)
T 3dmq_A 372 MLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKV 450 (968)
T ss_dssp SSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHH
Confidence 00000001112223333 2345666666664 689999899999999998888864
Q ss_pred HHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCccccc
Q 043990 438 FIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL 517 (911)
Q Consensus 438 ~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 517 (911)
.... ......... ...+.+|..+...+. .....+...
T Consensus 451 ~~~~------~~~~~~~~~--------~~~~l~pe~~~~~l~-----------------------------~~~~~~~~~ 487 (968)
T 3dmq_A 451 SGIM------GARKSAEDR--------ARDMLYPERIYQEFE-----------------------------GDNATWWNF 487 (968)
T ss_dssp HHHT------TCCSSGGGG--------THHHHCSGGGTTTTT-----------------------------SSSCCTTTT
T ss_pred Hhhh------hhhhhhHHH--------HhhhcChHHHHHHhh-----------------------------hhhhcccCc
Confidence 2110 000000000 011122332221111 011234556
Q ss_pred chHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH-cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE-RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 518 S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~-~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
+.|+..|.+++.. ..+.|+||||+++.+++.|...|.. .|+++..++|+|+..+|.+++++|+++.. ...+|++|
T Consensus 488 ~~K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~~vLvaT 563 (968)
T 3dmq_A 488 DPRVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDT-GAQVLLCS 563 (968)
T ss_dssp SHHHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTS-SCEEEECS
T ss_pred cHHHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCC-cccEEEec
Confidence 8999999999987 3578999999999999999999995 59999999999999999999999998642 24688899
Q ss_pred CCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 043990 597 KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGL 664 (911)
Q Consensus 597 kagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L 664 (911)
+++++|||++.|++||+||++|||..+.|++||++|+||++.|+||+++..+|+|++|++.+..|..+
T Consensus 564 ~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~ 631 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968)
T ss_dssp CCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred chhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999877654
No 5
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=3.2e-44 Score=388.43 Aligned_cols=255 Identities=29% Similarity=0.413 Sum_probs=192.9
Q ss_pred hhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHh-hhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcC
Q 043990 403 ILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAI-SEETKQSKILAYITALKKLCNHPKLIYDTIKSG 481 (911)
Q Consensus 403 ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~-~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~ 481 (911)
-+||++.++..+||+|++.+++|+||+.|+++|+.++......... ........++..+++||++|+||.++.+.
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~---- 88 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG---- 88 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCS----
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCC----
Confidence 4799999999999999999999999999999999987543211110 11123456789999999999999998621
Q ss_pred CCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc-C
Q 043990 482 NPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-R 560 (911)
Q Consensus 482 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~-g 560 (911)
......++|+..|.++|..+.. .++|+||||+|+.+++.|+..|... |
T Consensus 89 ------------------------------~~~~~~s~K~~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g 137 (271)
T 1z5z_A 89 ------------------------------EQSVRRSGKMIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELN 137 (271)
T ss_dssp ------------------------------CCCSTTCHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHC
T ss_pred ------------------------------ccccccCHHHHHHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcC
Confidence 0113459999999999999876 6899999999999999999999985 9
Q ss_pred CCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEE
Q 043990 561 YPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF 640 (911)
Q Consensus 561 i~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~ 640 (911)
+++.+++|+++.++|++++++|+++. ...+||+||++||+||||++|++||+||+||||+.+.||+||+||+||+++|+
T Consensus 138 ~~~~~l~G~~~~~~R~~~i~~F~~~~-~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~ 216 (271)
T 1z5z_A 138 TEVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVI 216 (271)
T ss_dssp SCCCEECTTSCHHHHHHHHHHHHHCT-TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCE
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC-CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceE
Confidence 99999999999999999999999853 23489999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhccCCC
Q 043990 641 IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDD 697 (911)
Q Consensus 641 VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~~~ 697 (911)
||+|++.|||||+|++++..|..++..+++..... ...||.+||++||++.++
T Consensus 217 v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~----~~~~~~~~l~~l~~~~~~ 269 (271)
T 1z5z_A 217 VHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSW----ITELSTEELRKVIELSVG 269 (271)
T ss_dssp EEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHH----HHTSCHHHHHHHHSCCCT
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHHHHHHHccCchh----hhcCCHHHHHHHhccCCC
Confidence 99999999999999999999999999888764322 357999999999999765
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.8e-41 Score=390.85 Aligned_cols=428 Identities=17% Similarity=0.164 Sum_probs=264.7
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..|||||++++.|++. + ++||+++||+|||++++.++..++.. ...++|||||+ +|+.||.+
T Consensus 8 ~~l~~~Q~~~i~~~~~---------~--~~ll~~~tG~GKT~~~~~~~~~~~~~------~~~~~liv~P~~~L~~q~~~ 70 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE---------T--NCLIVLPTGLGKTLIAMMIAEYRLTK------YGGKVLMLAPTKPLVLQHAE 70 (494)
T ss_dssp HCCCHHHHHHHHHGGG---------S--CEEEECCTTSCHHHHHHHHHHHHHHH------SCSCEEEECSSHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh---------C--CEEEEcCCCCCHHHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHH
Confidence 4799999999999853 2 78999999999999999998887652 14589999998 89999999
Q ss_pred HHHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccchh
Q 043990 261 EIKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
++.+|++. ...+..+++.......... ...++|+|+||+++..... .......|++||+||||++++.....
T Consensus 71 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~------~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~ 144 (494)
T 1wp9_A 71 SFRRLFNLPPEKIVALTGEKSPEERSKA------WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYV 144 (494)
T ss_dssp HHHHHBCSCGGGEEEECSCSCHHHHHHH------HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHH
T ss_pred HHHHHhCcchhheEEeeCCcchhhhhhh------ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHH
Confidence 99999853 3355566655443221111 1245799999999975443 12235689999999999999753211
Q ss_pred c---------------------cCCHHHHHHhhhhcCCCCC---CCHHHHHHHHhhhhcc-CCCCCCcHHHHHhhhhHHH
Q 043990 339 N---------------------RNDLEEFFAMVNFTNPGIL---GDAAYFRRYYETSIIC-GREPTATEEEKKLGIERSS 393 (911)
Q Consensus 339 ~---------------------~N~l~El~sLl~fl~P~~l---~~~~~F~~~f~~pi~~-~~~~~~~~~~~~~~~~~~~ 393 (911)
. .|+..+++.++.++.+... .....+...|..+... ..... ......
T Consensus 145 ~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 216 (494)
T 1wp9_A 145 FIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVD--------LPEIYK 216 (494)
T ss_dssp HHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEEC--------CCHHHH
T ss_pred HHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecC--------CcHHHH
Confidence 1 0555666666655543321 1111111111100000 00000 012235
Q ss_pred HHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHH-----HHHHHHHH-----------hHHH---HHHh--hhhh
Q 043990 394 ELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQS-----ELYNHFIH-----------SKNV---KRAI--SEET 452 (911)
Q Consensus 394 eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~-----~lY~~~l~-----------~~~~---~~~~--~~~~ 452 (911)
.+...+.+++.+|.+......+..... ..++.... .++..+.. .... .... ....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (494)
T 1wp9_A 217 EVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQ 292 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccC----CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 677778888888887666544332211 11222111 11111000 0000 0000 0000
Q ss_pred hHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHh
Q 043990 453 KQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLR 532 (911)
Q Consensus 453 ~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~ 532 (911)
........+..+...+.++.......... ...+........ .. ......++|+..|.++|..+.
T Consensus 293 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~------------~~~~~~~~k~~~l~~~l~~~~ 356 (494)
T 1wp9_A 293 GLSALRAYIKKLYEEAKAGSTKASKEIFS---DKRMKKAISLLV-QA------------KEIGLDHPKMDKLKEIIREQL 356 (494)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHT---SHHHHHHHHHHH-HH------------HHHTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhccccchhhhhhhh---hHHHHHHHHHHH-HH------------HhcCCCChHHHHHHHHHHHHh
Confidence 11122233333333333211100000000 000000000000 00 000134889999999998865
Q ss_pred h-cCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeC--------CCCHHHHHHHHHhhcCCCCCceEEEEecCCccccc
Q 043990 533 Q-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDG--------TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGL 603 (911)
Q Consensus 533 ~-~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdG--------sts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GL 603 (911)
. ..+.|+|||++++.+++.+...|...|+++..++| +++..+|++++++|+++... +|++|+++|+||
T Consensus 357 ~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gl 433 (494)
T 1wp9_A 357 QRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGL 433 (494)
T ss_dssp HHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGG
T ss_pred ccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCC
Confidence 2 36899999999999999999999999999999999 89999999999999986543 799999999999
Q ss_pred CCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 043990 604 NLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQK 666 (911)
Q Consensus 604 NL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~ 666 (911)
||++|++||+||++|||..+.||+||++|.|| +.+|+|++.+|+||+++.++..|+.++.
T Consensus 434 dl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 434 DVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp GSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998 8999999999999999999999987653
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.1e-38 Score=367.25 Aligned_cols=374 Identities=16% Similarity=0.194 Sum_probs=245.7
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..|+|||.+++.+++. .+++||+++||+|||++++.++..+ ..++|||||+ +|+.||.+
T Consensus 92 ~~l~~~Q~~ai~~i~~----------~~~~ll~~~TGsGKT~~~l~~i~~~----------~~~~Lvl~P~~~L~~Q~~~ 151 (472)
T 2fwr_A 92 ISLRDYQEKALERWLV----------DKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKE 151 (472)
T ss_dssp CCBCHHHHHHHHHHTT----------TTEEEEECCTTSCHHHHHHHHHHHH----------CSCEEEEESSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHh----------cCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEECCHHHHHHHHH
Confidence 4689999999998753 2358999999999999999988765 2479999999 99999999
Q ss_pred HHHHHhCCCeE-EEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhc
Q 043990 261 EIKKWVGGRVQ-LIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 261 Ei~k~~~~~~~-v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
++.+| + .. +..+++.... ..+|+|+||+.+......+. ..|++||+||||++.+.....
T Consensus 152 ~~~~~-~--~~~v~~~~g~~~~--------------~~~Ivv~T~~~l~~~~~~~~--~~~~liIvDEaH~~~~~~~~~- 211 (472)
T 2fwr_A 152 RLGIF-G--EEYVGEFSGRIKE--------------LKPLTVSTYDSAYVNAEKLG--NRFMLLIFDEVHHLPAESYVQ- 211 (472)
T ss_dssp HGGGG-C--GGGEEEBSSSCBC--------------CCSEEEEEHHHHHHTHHHHT--TTCSEEEEETGGGTTSTTTHH-
T ss_pred HHHhC-C--CcceEEECCCcCC--------------cCCEEEEEcHHHHHHHHHhc--CCCCEEEEECCcCCCChHHHH-
Confidence 99994 4 34 5555554332 24799999999976655442 469999999999998764321
Q ss_pred cCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhc-cCCCc
Q 043990 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSN-HLPPK 418 (911)
Q Consensus 340 ~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~-~LP~k 418 (911)
++..+.... -+..+..+.. .......+...+.+.+.++...++.. .+++.
T Consensus 212 ---------~~~~~~~~~-------------~l~lSATp~~-------~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~ 262 (472)
T 2fwr_A 212 ---------IAQMSIAPF-------------RLGLTATFER-------EDGRHEILKEVVGGKVFELFPDSLAGKHLAKY 262 (472)
T ss_dssp ---------HHHTCCCSE-------------EEEEESCCCC-------TTSGGGSHHHHTCCEEEECCHHHHTSCCCCSE
T ss_pred ---------HHHhcCCCe-------------EEEEecCccC-------CCCHHHHHHHHhCCeEeecCHHHHhcCcCCCe
Confidence 222211100 0000000000 00111346667777777777666644 47887
Q ss_pred EEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcc
Q 043990 419 IIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498 (911)
Q Consensus 419 ~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e 498 (911)
....+.+.+++.++..|..+.... .. ......+... ....+.........+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------------~l~~~~~~~~-------~~~~~~~~~~~~~~~ 313 (472)
T 2fwr_A 263 TIKRIFVPLAEDERVEYEKREKVY--KQ--------------------FLRARGITLR-------RAEDFNKIVMASGYD 313 (472)
T ss_dssp EECCEEECCCHHHHHHTTTTTHHH--HS--------------------CSSSCCCTTT-------CCSSSTTTTTTTCCS
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHH--HH--------------------HHHhcCcccc-------chhhHHHHHHHhccC
Confidence 778889999999998887542210 00 0000000000 000000000000000
Q ss_pred cccCCCCCC--CCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Q 043990 499 MFSGRSGSW--TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 499 ~~~~~~~~~--~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~ 576 (911)
. ....... ..........+.|+..|.+++.. ..++|+|||++++.+++.+...|. +..++|.++..+|.
T Consensus 314 ~-~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~ 384 (472)
T 2fwr_A 314 E-RAYEALRAWEEARRIAFNSKNKIRKLREILER---HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREERE 384 (472)
T ss_dssp S-SSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH---TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHH
T ss_pred H-HHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh---CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHH
Confidence 0 0000000 00000012347899999998887 357899999999999999998874 45689999999999
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCc-ccEEEEEEEeCCCHHHHHH
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQK-KRVFIYRFLSTGTIEEKVY 655 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQk-k~V~VyrLi~~gTIEEkI~ 655 (911)
+++++|+++... +|++|+++++|+|++.+++||+||++|||..+.|++||++|.||. +.|+||+|++.+|+||+|.
T Consensus 385 ~~~~~F~~g~~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~ 461 (472)
T 2fwr_A 385 EILEGFRTGRFR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTA 461 (472)
T ss_dssp THHHHHHHSSCS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-----
T ss_pred HHHHHHhCCCCC---EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHH
Confidence 999999986554 789999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHH
Q 043990 656 QRQMSKEGLQ 665 (911)
Q Consensus 656 ~rq~~K~~L~ 665 (911)
+++..|..++
T Consensus 462 ~~r~~~~~~a 471 (472)
T 2fwr_A 462 RRRKNAAKGA 471 (472)
T ss_dssp ----------
T ss_pred HHHHHhhccC
Confidence 9999887764
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.6e-34 Score=338.55 Aligned_cols=437 Identities=14% Similarity=0.149 Sum_probs=206.0
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..|+|||.+++.+++. .+.+|++++||+|||++++..+...+...... ...++|||||+ .|+.||.+
T Consensus 6 ~~~~~~Q~~~i~~~~~----------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~ 73 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----------GKNALICAPTGSGKTFVSILICEHHFQNMPAG--RKAKVVFLATKVPVYEQQKN 73 (556)
T ss_dssp --CCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSS--CCCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc----------CCCEEEEcCCCChHHHHHHHHHHHHHHhCccc--CCCeEEEEeCCHHHHHHHHH
Confidence 4688999999999853 24689999999999999999988877765321 14579999998 89999999
Q ss_pred HHHHHhCC-CeEEEEecCCcchhh-hccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCCccc
Q 043990 261 EIKKWVGG-RVQLIALCESTRDDV-VSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~r~~~-~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
++.+|++. .+.+..++++..... ...+ ...++|+|+||+.+...... +.....|++||+||||++.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~ 147 (556)
T 4a2p_A 74 VFKHHFERQGYSVQGISGENFSNVSVEKV------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP 147 (556)
T ss_dssp HHHHHHGGGTCCEEECCCC-----CHHHH------HHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH
T ss_pred HHHHHhcccCceEEEEeCCCCcchhHHHh------hCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch
Confidence 99999863 466666666543211 1110 12367999999999755432 21346789999999999987643
Q ss_pred hhcc---------------------------C---C----HHHHHHhhhhcCCC----CCCCHHHHHHHHhhhhccCCCC
Q 043990 337 LTNR---------------------------N---D----LEEFFAMVNFTNPG----ILGDAAYFRRYYETSIICGREP 378 (911)
Q Consensus 337 ~~~~---------------------------N---~----l~El~sLl~fl~P~----~l~~~~~F~~~f~~pi~~~~~~ 378 (911)
.... + + +..+..+...+.+. .......+..++..|.......
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (556)
T 4a2p_A 148 YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLV 227 (556)
T ss_dssp HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEEC
T ss_pred HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEc
Confidence 1100 0 0 11122222222211 1112233333333222111000
Q ss_pred C--CcHHHHHhhhhHHHHHHHHhhHH----------------------hhhhcHHHHhccCCCcEEEEEEecCCHHHHHH
Q 043990 379 T--ATEEEKKLGIERSSELSAKVNQF----------------------ILRRTNALLSNHLPPKIIEVVCCKLTPLQSEL 434 (911)
Q Consensus 379 ~--~~~~~~~~~~~~~~eL~~~l~~~----------------------ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~l 434 (911)
. ...............+...+..+ +....+......+| ....+..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 297 (556)
T 4a2p_A 228 KRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE----------DKEEESRI 297 (556)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC-------------CHHHHHHH
T ss_pred CCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhccc----------ccchhHHH
Confidence 0 00001101111111122221111 11100100000111 11122222
Q ss_pred HHHHHHhHHHHHHhhh---hhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC---cccccCCCCCCC
Q 043990 435 YNHFIHSKNVKRAISE---ETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP---PEMFSGRSGSWT 508 (911)
Q Consensus 435 Y~~~l~~~~~~~~~~~---~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~---~e~~~~~~~~~~ 508 (911)
|..+.........+.. ..........+..++..+..- ..... ..........+. +.....
T Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~l~~~------ 363 (556)
T 4a2p_A 298 CRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNV-------KNGPY-TELEQHLTAKFQEKEPELIAL------ 363 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-------HHSCC-CHHHHHHHHHHHTTHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------HhcCC-CHHHHHHHHHHhhHHHHhhhh------
Confidence 3222111000000000 000001111111122211100 00000 000000000000 000000
Q ss_pred CCCCcccccchHHHHHHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHHHc------------CCCEEEEeCCCCHHHH
Q 043990 509 GGDGAWVELSGKMHVLARLLGHLR-QRTDDRIVLVSNYTQTLDLFAQLCRER------------RYPYLRLDGTTSISKR 575 (911)
Q Consensus 509 ~~~~~~~~~S~Kl~~L~~LL~~l~-~~~~~KVIIFSq~~~~ld~L~~~L~~~------------gi~~~~LdGsts~~~R 575 (911)
.......++|+..|.++|.... ...+.|+|||++++.+++.|...|... |..+..++|+++..+|
T Consensus 364 --~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R 441 (556)
T 4a2p_A 364 --SKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQ 441 (556)
T ss_dssp --HHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------
T ss_pred --ccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHH
Confidence 0000123889999999997654 235789999999999999999999876 5666677778999999
Q ss_pred HHHHHhhcC-CCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHH
Q 043990 576 QKLVNHFND-PSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 654 (911)
Q Consensus 576 ~~iv~~Fn~-~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI 654 (911)
.+++++|++ +... +|++|+++++|||++++++||+||++|||..+.||+|| |+.+++.+|.|++.++++|+
T Consensus 442 ~~~~~~F~~~g~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~- 513 (556)
T 4a2p_A 442 KGVLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN- 513 (556)
T ss_dssp ------------CC---EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-
T ss_pred HHHHHHhcccCceE---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-
Confidence 999999998 5444 89999999999999999999999999999999999999 45588999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 043990 655 YQRQMSKEGLQKVIQQ 670 (911)
Q Consensus 655 ~~rq~~K~~L~~~v~~ 670 (911)
+..+..|..+...++.
T Consensus 514 ~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 514 EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 6677777777655443
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.3e-33 Score=347.62 Aligned_cols=438 Identities=13% Similarity=0.131 Sum_probs=213.8
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWE 259 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~ 259 (911)
...|||||.+++.+++. .+.+|++++||+|||++++..+...+.....+ ...++|||||+ .|+.||.
T Consensus 246 ~~~l~~~Q~~~i~~~l~----------~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~--~~~~~Lvl~Pt~~L~~Q~~ 313 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----------GKNALICAPTGSGKTFVSILICEHHFQNMPAG--RKAKVVFLATKVPVYEQQK 313 (797)
T ss_dssp --CCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSS--CCCCEEEECSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh----------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccc--CCCeEEEEeCCHHHHHHHH
Confidence 45799999999999853 25689999999999999999998887765321 14589999997 6999999
Q ss_pred HHHHHHhCC-CeEEEEecCCcchhh-hccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCCcc
Q 043990 260 AEIKKWVGG-RVQLIALCESTRDDV-VSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 260 ~Ei~k~~~~-~~~v~~~~~~~r~~~-~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN~~ 335 (911)
+++.+|++. .+.+..++++..... ...+ ...++|+|+||+.+...... +.....|++||+||||++.+..
T Consensus 314 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~ 387 (797)
T 4a2q_A 314 NVFKHHFERQGYSVQGISGENFSNVSVEKV------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 387 (797)
T ss_dssp HHHHHHHGGGTCCEEEECCC-----CHHHH------HHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS
T ss_pred HHHHHhcccCCceEEEEeCCcchhhhHHHh------hCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc
Confidence 999999863 466666666553221 1111 12468999999999654432 2123468999999999998764
Q ss_pred chhcc-------------------------------------CCHHHHHHhhhhcCCC-CCCCHHHHHHHHhhhhccCCC
Q 043990 336 TLTNR-------------------------------------NDLEEFFAMVNFTNPG-ILGDAAYFRRYYETSIICGRE 377 (911)
Q Consensus 336 s~~~~-------------------------------------N~l~El~sLl~fl~P~-~l~~~~~F~~~f~~pi~~~~~ 377 (911)
..... +.+.++++.++.-... .......+..++..|......
T Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~ 467 (797)
T 4a2q_A 388 PYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRL 467 (797)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEE
T ss_pred cHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEe
Confidence 21100 1222233332211101 111223333333333211110
Q ss_pred CC--CcHHHHHhhhhHHHHHHHHhhHHhh----------------------hhcHHHHhccCCCcEEEEEEecCCHHHHH
Q 043990 378 PT--ATEEEKKLGIERSSELSAKVNQFIL----------------------RRTNALLSNHLPPKIIEVVCCKLTPLQSE 433 (911)
Q Consensus 378 ~~--~~~~~~~~~~~~~~eL~~~l~~~il----------------------RRtk~~v~~~LP~k~~~vv~~~ls~~Q~~ 433 (911)
.. ..............++...+..++- ...+......+| ....+..
T Consensus 468 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 537 (797)
T 4a2q_A 468 VKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE----------DKEEESR 537 (797)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCS----------SHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhccc----------ccchhhH
Confidence 00 1111111111111222222222110 000000000011 0111112
Q ss_pred HHHHHHHhHHHHHHhhh---hhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC---cccccCCCCCC
Q 043990 434 LYNHFIHSKNVKRAISE---ETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP---PEMFSGRSGSW 507 (911)
Q Consensus 434 lY~~~l~~~~~~~~~~~---~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~---~e~~~~~~~~~ 507 (911)
+|..+.........+.. ..........+..+++.|.+..- ... ..........+. +.....
T Consensus 538 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~-~~~~~~l~~~~~~~~~~l~~~----- 604 (797)
T 4a2q_A 538 ICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKN-------GPY-TELEQHLTAKFQEKEPELIAL----- 604 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-------TTC-CHHHHHHHHHHHTTHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhc-------cCc-cHHHHHHHHHHHHHHHHHHHh-----
Confidence 22211110000000000 00001111222222222221000 000 000000000000 000000
Q ss_pred CCCCCcccccchHHHHHHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHHHc------------CCCEEEEeCCCCHHH
Q 043990 508 TGGDGAWVELSGKMHVLARLLGHLR-QRTDDRIVLVSNYTQTLDLFAQLCRER------------RYPYLRLDGTTSISK 574 (911)
Q Consensus 508 ~~~~~~~~~~S~Kl~~L~~LL~~l~-~~~~~KVIIFSq~~~~ld~L~~~L~~~------------gi~~~~LdGsts~~~ 574 (911)
.......++|+..|.++|.... ...+.|+||||+++.+++.|...|... |..+..++|+|+..+
T Consensus 605 ---~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~e 681 (797)
T 4a2q_A 605 ---SKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPS 681 (797)
T ss_dssp ---HHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------
T ss_pred ---hcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHH
Confidence 0000124899999999998743 346799999999999999999999873 666777888899999
Q ss_pred HHHHHHhhcC-CCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHH
Q 043990 575 RQKLVNHFND-PSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEK 653 (911)
Q Consensus 575 R~~iv~~Fn~-~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEk 653 (911)
|.+++++|++ +... +|++|+++|+|||+++|++||+||++|||..+.||+|| |+.+++.+|.|++.++++|+
T Consensus 682 R~~~l~~F~~~g~~~---vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 682 QKGVLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN 754 (797)
T ss_dssp ------------CCS---EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH
T ss_pred HHHHHHHhhccCCce---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCCcHHHH
Confidence 9999999998 5544 89999999999999999999999999999999999999 45588999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043990 654 VYQRQMSKEGLQKVIQQ 670 (911)
Q Consensus 654 I~~rq~~K~~L~~~v~~ 670 (911)
+..+..|..+...++.
T Consensus 755 -~~~~~~ke~~~~~~i~ 770 (797)
T 4a2q_A 755 -EKCNRYKEEMMNKAVE 770 (797)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 6777777777654443
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.3e-32 Score=325.46 Aligned_cols=432 Identities=14% Similarity=0.167 Sum_probs=225.3
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|||||.+++.+++. .+.+|++++||+|||++++..+...+...... ...++|||||+ .|+.||.++
T Consensus 4 ~~~~~Q~~~i~~~~~----------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~ 71 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----------GKNTIICAPTGCGKTFVSLLICEHHLKKFPCG--QKGKVVFFANQIPVYEQQATV 71 (555)
T ss_dssp CCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSS--CCCCEEEECSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhC----------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccC--CCCEEEEEeCCHHHHHHHHHH
Confidence 578999999999853 25789999999999999999988877765321 14579999999 899999999
Q ss_pred HHHHhCC-CeEEEEecCCcchhhh-ccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCCccch
Q 043990 262 IKKWVGG-RVQLIALCESTRDDVV-SGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~~~-~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
+.+|++. .+.+..++++...... ..+ ...++|+|+||+.+...... +.....|++||+||||++.+....
T Consensus 72 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~ 145 (555)
T 3tbk_A 72 FSRYFERLGYNIASISGATSDSVSVQHI------IEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPY 145 (555)
T ss_dssp HHHHHHTTTCCEEEECTTTGGGSCHHHH------HHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHH
T ss_pred HHHHhccCCcEEEEEcCCCcchhhHHHH------hcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchH
Confidence 9999864 4666666665532211 111 12367999999999665432 212456899999999999876421
Q ss_pred hccCCHHHHHHhh------------hhc-CCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhH-Hh
Q 043990 338 TNRNDLEEFFAMV------------NFT-NPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQ-FI 403 (911)
Q Consensus 338 ~~~N~l~El~sLl------------~fl-~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~-~i 403 (911)
..-+..+.... .+. .|. .++...+. .....+..+...+.. .+
T Consensus 146 --~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~-~~~~~~~~---------------------~~~~~~~~l~~~l~~~~~ 201 (555)
T 3tbk_A 146 --NQIMFRYLDHKLGESRDPLPQVVGLTASVG-VGDAKTAE---------------------EAMQHICKLCAALDASVI 201 (555)
T ss_dssp --HHHHHHHHHHHTSSCCSCCCEEEEEESCCC-CTTCCSHH---------------------HHHHHHHHHHHHTTCSEE
T ss_pred --HHHHHHHHHhhhccccCCCCeEEEEecCcc-cCccccHH---------------------HHHHHHHHHHHhcCCeee
Confidence 10011111110 000 000 00000000 001111233333331 11
Q ss_pred --hhhcHHHHhccCCCcEEEEEEec--CCHHHHHHHHHHHHh-HHHHH---------------------------Hhhh-
Q 043990 404 --LRRTNALLSNHLPPKIIEVVCCK--LTPLQSELYNHFIHS-KNVKR---------------------------AISE- 450 (911)
Q Consensus 404 --lRRtk~~v~~~LP~k~~~vv~~~--ls~~Q~~lY~~~l~~-~~~~~---------------------------~~~~- 450 (911)
.......+..+.+......+.+. +.+.-...+..++.. ..... .+..
T Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 281 (555)
T 3tbk_A 202 ATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKA 281 (555)
T ss_dssp ECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHH
T ss_pred eccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHH
Confidence 11123344445544444444444 222222222111110 00000 0000
Q ss_pred --------h----hhHhhHHHHHHHHHHHhcChhhhH-------------hhhhcCCCCCCCcchhhhcCCcccccCCCC
Q 043990 451 --------E----TKQSKILAYITALKKLCNHPKLIY-------------DTIKSGNPGTTGFEDCIRFFPPEMFSGRSG 505 (911)
Q Consensus 451 --------~----~~~~~~l~~l~~LrklcnhP~Ll~-------------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 505 (911)
. .....+......|++. ++...+. ..+.... ...+......+...+.. ...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~ 357 (555)
T 3tbk_A 282 CSVFQMADKEEESRVCKALFLYTSHLRKY-NDALIISEDAQMTDALNYLKAFFHDVR--EAAFDETERELTRRFEE-KLE 357 (555)
T ss_dssp HHTCCCSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHC--C-----HHHHHHHHHHT-THH
T ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHHHHHh--hcccchHHHHHHHHHhh-hhh
Confidence 0 0000000111111111 0000000 0000000 00000000000000000 000
Q ss_pred CCCCCCCcccccchHHHHHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHHHcC------------CCEEEEeCCCCH
Q 043990 506 SWTGGDGAWVELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERR------------YPYLRLDGTTSI 572 (911)
Q Consensus 506 ~~~~~~~~~~~~S~Kl~~L~~LL~~l~~-~~~~KVIIFSq~~~~ld~L~~~L~~~g------------i~~~~LdGsts~ 572 (911)
............++|+..|.++|..+.. ..+.|+||||+++.+++.|...|...| ..+..++|+|+.
T Consensus 358 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 437 (555)
T 3tbk_A 358 ELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTL 437 (555)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------
T ss_pred hhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCH
Confidence 0000000011247899999999987643 346899999999999999999999864 455566679999
Q ss_pred HHHHHHHHhhcC-CCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 043990 573 SKRQKLVNHFND-PSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIE 651 (911)
Q Consensus 573 ~~R~~iv~~Fn~-~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIE 651 (911)
++|.+++++|++ +... +|++|+++++|||++++++||+||++|||..|.||+|| |+.+.+.+|.|++.++++
T Consensus 438 ~~R~~~~~~F~~~g~~~---vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 438 PAQKCVLEAFRASGDNN---ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp --------------CCS---EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHH
T ss_pred HHHHHHHHHHhcCCCee---EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHH
Confidence 999999999998 5544 78999999999999999999999999999999999999 667999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043990 652 EKVYQRQMSKEGLQKVI 668 (911)
Q Consensus 652 EkI~~rq~~K~~L~~~v 668 (911)
++ ...+..|+.+....
T Consensus 511 ~~-~~~~~~~e~~~~~~ 526 (555)
T 3tbk_A 511 EK-EKANMIKEKIMNES 526 (555)
T ss_dssp HH-HHHHHHHHHHHHHH
T ss_pred HH-HHHhhHHHHHHHHH
Confidence 98 45555666555443
No 11
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.5e-33 Score=351.75 Aligned_cols=435 Identities=13% Similarity=0.131 Sum_probs=209.8
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWE 259 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~ 259 (911)
...|||||.+++.+++. ...+|++++||+|||++++..+...+.....+ ...++|||||+ .|+.||.
T Consensus 246 ~~~~r~~Q~~ai~~il~----------g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~--~~~~vLvl~Pt~~L~~Q~~ 313 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----------GKNALICAPTGSGKTFVSILICEHHFQNMPAG--RKAKVVFLATKVPVYEQQK 313 (936)
T ss_dssp --CCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSS--CCCCEEEECSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----------CCCEEEEeCCCchHHHHHHHHHHHHHHhcccc--CCCeEEEEeCCHHHHHHHH
Confidence 45789999999999853 25689999999999999998887766554221 14579999997 5999999
Q ss_pred HHHHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCCccc
Q 043990 260 AEIKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 260 ~Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
+++.+|++. .+.+..++++....... ......++|+|+||+++...... +.....|++||+||||++.+...
T Consensus 314 ~~~~~~~~~~~~~v~~~~G~~~~~~~~-----~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~ 388 (936)
T 4a2w_A 314 NVFKHHFERQGYSVQGISGENFSNVSV-----EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP 388 (936)
T ss_dssp HHHHHHHHTTTCCEEEECCC-----CC-----HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH
T ss_pred HHHHHHhcccCceEEEEECCcchhhHH-----HHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc
Confidence 999999864 46666666655322100 00012467999999999765432 21234689999999999988643
Q ss_pred hhcc-------------------------------------CCHHHHHHhhhhcCC-CCCCCHHHHHHHHhhhhccCCCC
Q 043990 337 LTNR-------------------------------------NDLEEFFAMVNFTNP-GILGDAAYFRRYYETSIICGREP 378 (911)
Q Consensus 337 ~~~~-------------------------------------N~l~El~sLl~fl~P-~~l~~~~~F~~~f~~pi~~~~~~ 378 (911)
.... +.+.+++++++.-.. ........+..++..|.......
T Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 468 (936)
T 4a2w_A 389 YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLV 468 (936)
T ss_dssp HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEEC
T ss_pred HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEec
Confidence 1100 122223333321100 01112233444333332211100
Q ss_pred C--CcHHHHHhhhhHHHHHHHHhhHHh----------------------hhhcHHHHhccCCCcEEEEEEecCCHHHHHH
Q 043990 379 T--ATEEEKKLGIERSSELSAKVNQFI----------------------LRRTNALLSNHLPPKIIEVVCCKLTPLQSEL 434 (911)
Q Consensus 379 ~--~~~~~~~~~~~~~~eL~~~l~~~i----------------------lRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~l 434 (911)
. ...............+...+..++ ....+......+|. ...+..+
T Consensus 469 ~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~----------~~~~~~~ 538 (936)
T 4a2w_A 469 KRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED----------KEEESRI 538 (936)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSC----------HHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccc----------cchhhHH
Confidence 0 010111111111112222221111 00001101111111 1111222
Q ss_pred HHHHHHhHHHHHHhhhh---hhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC---cccccCCCCCCC
Q 043990 435 YNHFIHSKNVKRAISEE---TKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP---PEMFSGRSGSWT 508 (911)
Q Consensus 435 Y~~~l~~~~~~~~~~~~---~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~---~e~~~~~~~~~~ 508 (911)
|..+.........+... .........+..++..+....- ... ...-......+. +.....
T Consensus 539 ~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~-------~~~-~~~e~~l~~~~~~~~~~l~~~------ 604 (936)
T 4a2w_A 539 CRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKN-------GPY-TELEQHLTAKFQEKEPELIAL------ 604 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-------TTC-CHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh-------ccC-CHHHHHHHHHHHHHHHHHHHh------
Confidence 22211110000000000 0000111112222222111000 000 000000000000 000000
Q ss_pred CCCCcccccchHHHHHHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHHHc------------CCCEEEEeCCCCHHHH
Q 043990 509 GGDGAWVELSGKMHVLARLLGHLR-QRTDDRIVLVSNYTQTLDLFAQLCRER------------RYPYLRLDGTTSISKR 575 (911)
Q Consensus 509 ~~~~~~~~~S~Kl~~L~~LL~~l~-~~~~~KVIIFSq~~~~ld~L~~~L~~~------------gi~~~~LdGsts~~~R 575 (911)
.......++|+..|.++|.... ...+.|+||||+++.+++.|...|... |..+..++|+|+..+|
T Consensus 605 --~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR 682 (936)
T 4a2w_A 605 --SKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQ 682 (936)
T ss_dssp --HTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------
T ss_pred --hhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHH
Confidence 0000123899999999998754 235789999999999999999999987 5666667888999999
Q ss_pred HHHHHhhcC-CCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHH
Q 043990 576 QKLVNHFND-PSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 654 (911)
Q Consensus 576 ~~iv~~Fn~-~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI 654 (911)
.+++++|++ +... ||++|+++|+||||+++++||+||++|||..+.||+|| ||.+++.+|.|++.+|++|++
T Consensus 683 ~~il~~Fr~~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~ 755 (936)
T 4a2w_A 683 KGVLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENE 755 (936)
T ss_dssp -----------CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHH
T ss_pred HHHHHHhhccCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHH
Confidence 999999998 5544 89999999999999999999999999999999999999 556888999999999999997
Q ss_pred HHHHHHHHHHHH
Q 043990 655 YQRQMSKEGLQK 666 (911)
Q Consensus 655 ~~rq~~K~~L~~ 666 (911)
+ .+..|..+..
T Consensus 756 ~-~~~~ke~~~~ 766 (936)
T 4a2w_A 756 K-CNRYKEEMMN 766 (936)
T ss_dssp H-HHHHHHHHHH
T ss_pred H-HHHHHHHHHH
Confidence 7 5555555543
No 12
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.98 E-value=3.7e-32 Score=294.91 Aligned_cols=214 Identities=17% Similarity=0.129 Sum_probs=160.7
Q ss_pred CCCcEEEEEEecCCHHHHHHHHHHHH--hHHHHHHhhhhhh-----HhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCC
Q 043990 415 LPPKIIEVVCCKLTPLQSELYNHFIH--SKNVKRAISEETK-----QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTG 487 (911)
Q Consensus 415 LP~k~~~vv~~~ls~~Q~~lY~~~l~--~~~~~~~~~~~~~-----~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~ 487 (911)
-|++.+++++|.||+.|+++|+.++. ...+.....+... ...+...++.||++||||.|+.+..........
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~- 98 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITR- 98 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCST-
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcccccc-
Confidence 48999999999999999999999974 3444444433221 235678889999999999998543221111000
Q ss_pred cchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEe
Q 043990 488 FEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLD 567 (911)
Q Consensus 488 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~Ld 567 (911)
.....+++.|||+.+|.+||..+++ .++|||||||+++++|+|+.+|..+|++|.|+|
T Consensus 99 ---------------------~~~~~l~~~SGKf~~L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlD 156 (328)
T 3hgt_A 99 ---------------------DVPAHLAENSGKFSVLRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVHIKRYD 156 (328)
T ss_dssp ---------------------THHHHHHHTCHHHHHHHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESS
T ss_pred ---------------------chhhHHHHcCccHHHHHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCceEeCC
Confidence 0012356679999999999999987 689999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccC-----CCCCCEEEEeCCCCCcchH-HHHHHhhhhc--CCcccE
Q 043990 568 GTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLN-----LIGGNRLVLFDPDWNPAND-KQAAARVWRD--GQKKRV 639 (911)
Q Consensus 568 Gsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLN-----L~~An~VIl~Dp~WNPa~~-~QAigR~~Ri--GQkk~V 639 (911)
|++... +++. .....+++|+ +.+||.|+| |++|++||+||++|||..+ .||+.|+||+ ||+|+|
T Consensus 157 G~~~~~-~~k~------~~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v 228 (328)
T 3hgt_A 157 GHSIKS-AAAA------NDFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYA 228 (328)
T ss_dssp SCCC--------------CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------C
T ss_pred CCchhh-hhhc------ccCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcc
Confidence 996643 2221 1235678887 558888886 8999999999999999998 9999999999 789999
Q ss_pred EEEEEEeCCCHHHHHHHHHH
Q 043990 640 FIYRFLSTGTIEEKVYQRQM 659 (911)
Q Consensus 640 ~VyrLi~~gTIEEkI~~rq~ 659 (911)
.||||++.+||||.+++.-.
T Consensus 229 ~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 229 PIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp CEEEEEETTSHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHHccC
Confidence 99999999999999988743
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=1.7e-31 Score=326.27 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=111.4
Q ss_pred chHHHHHHHHHHHHh-hcC-CCeEEEEEcchHHHHHHHHHHHHc------CCCEEEEeCC--------CCHHHHHHHHHh
Q 043990 518 SGKMHVLARLLGHLR-QRT-DDRIVLVSNYTQTLDLFAQLCRER------RYPYLRLDGT--------TSISKRQKLVNH 581 (911)
Q Consensus 518 S~Kl~~L~~LL~~l~-~~~-~~KVIIFSq~~~~ld~L~~~L~~~------gi~~~~LdGs--------ts~~~R~~iv~~ 581 (911)
+.|+..|.++|.... ..+ +.++|||++++.+++.|...|... |+++..++|+ |+..+|.+++++
T Consensus 380 ~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~ 459 (699)
T 4gl2_A 380 NEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISK 459 (699)
T ss_dssp --CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHH
Confidence 566777777777643 333 789999999999999999999987 9999999999 999999999999
Q ss_pred hcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 043990 582 FNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSK 661 (911)
Q Consensus 582 Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K 661 (911)
|+++... +|++|.++++|||++.++.||+||++||+..+.||+||++|.| ..++.+...++.+...+.....+
T Consensus 460 F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~ 532 (699)
T 4gl2_A 460 FRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFR 532 (699)
T ss_dssp HCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHH
T ss_pred HhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHH
Confidence 9986554 8999999999999999999999999999999999999976655 44455566777665555555555
Q ss_pred HHHHHH
Q 043990 662 EGLQKV 667 (911)
Q Consensus 662 ~~L~~~ 667 (911)
..+...
T Consensus 533 ~~~~~~ 538 (699)
T 4gl2_A 533 EKMMYK 538 (699)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=4.8e-31 Score=310.54 Aligned_cols=346 Identities=13% Similarity=0.111 Sum_probs=230.6
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..|+|||.+++.+++. ..++||+++||+|||++++.++...+..+ ..++|||||+ .|+.||.+
T Consensus 112 ~~l~~~Q~~ai~~~~~----------~~~~ll~~~tGsGKT~~~~~~~~~~~~~~------~~~vlvl~P~~~L~~Q~~~ 175 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----------NRRRILNLPTSAGRSLIQALLARYYLENY------EGKILIIVPTTALTTQMAD 175 (510)
T ss_dssp ECCCHHHHHHHHHHHH----------HSEEEEECCSTTTHHHHHHHHHHHHHHHC------SSEEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh----------cCCcEEEeCCCCCHHHHHHHHHHHHHhCC------CCeEEEEECcHHHHHHHHH
Confidence 4899999999999875 14679999999999999998887776543 2489999998 78899999
Q ss_pred HHHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhc
Q 043990 261 EIKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
++.+|... ...+..+.++...... .....+|+|+||+.+....... ...|++||+||||++.+.
T Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~I~i~T~~~l~~~~~~~--~~~~~liIiDE~H~~~~~----- 240 (510)
T 2oca_A 176 DFVDYRLFSHAMIKKIGGGASKDDK--------YKNDAPVVVGTWQTVVKQPKEW--FSQFGMMMNDECHLATGK----- 240 (510)
T ss_dssp HHHHTTSSCGGGEEECGGGCCTTGG--------GCTTCSEEEEEHHHHTTSCGGG--GGGEEEEEEETGGGCCHH-----
T ss_pred HHHHhhcCCccceEEEecCCccccc--------cccCCcEEEEeHHHHhhchhhh--hhcCCEEEEECCcCCCcc-----
Confidence 99998543 2345555544322111 1245789999999986653322 346899999999999762
Q ss_pred cCCHHHHHHhhhhcCCCC--CCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHH--HhccC
Q 043990 340 RNDLEEFFAMVNFTNPGI--LGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNAL--LSNHL 415 (911)
Q Consensus 340 ~N~l~El~sLl~fl~P~~--l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~--v~~~L 415 (911)
.+..++..+.+.. ++ . .++.. ........+...+.+.+..-...+ -...+
T Consensus 241 -----~~~~il~~~~~~~~~l~--------------l----SATp~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (510)
T 2oca_A 241 -----SISSIISGLNNCMFKFG--------------L----SGSLR---DGKANIMQYVGMFGEIFKPVTTSKLMEDGQV 294 (510)
T ss_dssp -----HHHHHGGGCTTCCEEEE--------------E----ESCGG---GCSSCHHHHHHHHCSEECCCCCC--------
T ss_pred -----cHHHHHHhcccCcEEEE--------------E----EeCCC---CCcccHHHhHHhhCCeEEeeCHHHHhhCCcC
Confidence 2333333332211 10 0 00000 000000112222222221111111 11246
Q ss_pred CCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcC
Q 043990 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF 495 (911)
Q Consensus 416 P~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~ 495 (911)
++.....+.+.+++....... . ..... .+..++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~-------------~----~~~~~---~~~~~~~-------------------------- 328 (510)
T 2oca_A 295 TELKINSIFLRYPDEFTTKLK-------------G----KTYQE---EIKIITG-------------------------- 328 (510)
T ss_dssp -CCEEEEEEEECCHHHHHHHT-------------T----CCHHH---HHHHHHT--------------------------
T ss_pred CCceEEEEeecCChHHhcccc-------------c----cchHH---HHHHHhc--------------------------
Confidence 677777777777765431100 0 00000 0111111
Q ss_pred CcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Q 043990 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKR 575 (911)
Q Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R 575 (911)
...|...+.+++.......+.++|||++ +..++.|.+.|...+.++..++|+++..+|
T Consensus 329 ---------------------~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r 386 (510)
T 2oca_A 329 ---------------------LSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETR 386 (510)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHH
Confidence 1345555666666665545667788877 888888999999998999999999999999
Q ss_pred HHHHHhhcCCCCCceEEEEec-CCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcc-cEEEEEEEeCCCHHHH
Q 043990 576 QKLVNHFNDPSKNEFVFLLSS-KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKK-RVFIYRFLSTGTIEEK 653 (911)
Q Consensus 576 ~~iv~~Fn~~~~~~~v~LlSt-kagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk-~V~VyrLi~~gTIEEk 653 (911)
.+++++|+++... +|++| .++++|+|++.+++||+++++||+..+.|++||++|.|+.+ .|.||.++...++.++
T Consensus 387 ~~i~~~f~~g~~~---vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~ 463 (510)
T 2oca_A 387 NIMKTLAENGKGI---IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPK 463 (510)
T ss_dssp HHHHHHHHHCCSC---EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCS
T ss_pred HHHHHHHhCCCCC---EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhh
Confidence 9999999976544 77777 99999999999999999999999999999999999999997 8999999998776655
Q ss_pred HH
Q 043990 654 VY 655 (911)
Q Consensus 654 I~ 655 (911)
++
T Consensus 464 ~~ 465 (510)
T 2oca_A 464 SA 465 (510)
T ss_dssp SS
T ss_pred hh
Confidence 54
No 15
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1.5e-30 Score=317.83 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=85.4
Q ss_pred cchHHHHHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHHHcC----CCEEEEeC--------CCCHHHHHHHHHhhc
Q 043990 517 LSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERR----YPYLRLDG--------TTSISKRQKLVNHFN 583 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~-~~~~KVIIFSq~~~~ld~L~~~L~~~g----i~~~~LdG--------sts~~~R~~iv~~Fn 583 (911)
.+.|+..|.++|..... ..+.++|||++++.+++.|...|...| +++..++| +++.++|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 37899999999987642 256899999999999999999999998 89999955 999999999999999
Q ss_pred C-CCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHH
Q 043990 584 D-PSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 654 (911)
Q Consensus 584 ~-~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI 654 (911)
+ +... +|++|+++++|||++++++||+||++||+..+.||+|| +|. ++..+|.|++.+++++.-
T Consensus 458 ~~g~~~---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 458 ASGDHN---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp ---CCS---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHHH
T ss_pred hcCCcc---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHHH
Confidence 7 6555 78999999999999999999999999999999999999 884 678889999999887654
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=1.5e-28 Score=278.20 Aligned_cols=318 Identities=15% Similarity=0.140 Sum_probs=213.3
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|+|||.+++.++++ .+.+|++++||+|||++++..+...+... +...++|||||+ .|+.||.++
T Consensus 30 ~~~~~Q~~~i~~~~~----------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----~~~~~~lil~P~~~L~~q~~~~ 95 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----------GMDVLCQAKSGMGKTAVFVLATLQQLEPV----TGQVSVLVMCHTRELAFQISKE 95 (391)
T ss_dssp SCCHHHHHHHHHHTT----------TCCEEEECSSCSSHHHHHHHHHHHHCCCC----TTCCCEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc----------CCcEEEECCCCCcHHHHHHHHHHHhhccc----CCCeeEEEECCCHHHHHHHHHH
Confidence 488999999998853 25689999999999999887776654332 123579999998 788999999
Q ss_pred HHHHhCC--CeEEEEecCCcchhh-hccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccch
Q 043990 262 IKKWVGG--RVQLIALCESTRDDV-VSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 262 i~k~~~~--~~~v~~~~~~~r~~~-~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
+.+|... .+.+..+.++..... ...+. ...++|+|+||+.+...... ......+++||+||||++.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~-- 168 (391)
T 1xti_A 96 YERFSKYMPNVKVAVFFGGLSIKKDEEVLK-----KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL-- 168 (391)
T ss_dssp HHHHTTTCTTCCEEEECTTSCHHHHHHHHH-----HSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSH--
T ss_pred HHHHHhhCCCeEEEEEeCCCCHHHHHHHHh-----cCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhcc--
Confidence 9999753 355666655443221 11111 12357999999998654322 1124678999999999985420
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPP 417 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~ 417 (911)
.|.. .+..++ ..+|+
T Consensus 169 -------------------------~~~~---------------------------~~~~~~-------------~~~~~ 183 (391)
T 1xti_A 169 -------------------------DMRR---------------------------DVQEIF-------------RMTPH 183 (391)
T ss_dssp -------------------------HHHH---------------------------HHHHHH-------------HTSCS
T ss_pred -------------------------chHH---------------------------HHHHHH-------------hhCCC
Confidence 0110 011111 01222
Q ss_pred -cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC
Q 043990 418 -KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP 496 (911)
Q Consensus 418 -k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~ 496 (911)
.........+++....+. +.....|..+...... .........
T Consensus 184 ~~~~i~~SAT~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~------ 227 (391)
T 1xti_A 184 EKQVMMFSATLSKEIRPVC-----------------------------RKFMQDPMEIFVDDET-KLTLHGLQQ------ 227 (391)
T ss_dssp SSEEEEEESSCCSTHHHHH-----------------------------HHHCSSCEEEECCCCC-CCCCTTCEE------
T ss_pred CceEEEEEeeCCHHHHHHH-----------------------------HHHcCCCeEEEecCcc-ccCcccceE------
Confidence 222222333333211111 1122222211100000 000000000
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~ 576 (911)
. ........|...|..++... .+.|+|||++....++.+...|...|+.+..++|+++..+|.
T Consensus 228 --~------------~~~~~~~~~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 290 (391)
T 1xti_A 228 --Y------------YVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL 290 (391)
T ss_dssp --E------------EEECCGGGHHHHHHHHHHHS---CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred --E------------EEEcCchhHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Confidence 0 00122356777888877764 568999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
.+++.|+++... +|++|+++++|+|++++++||+|+++|++..+.|++||++|.|++..|++|
T Consensus 291 ~~~~~f~~~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 353 (391)
T 1xti_A 291 SRYQQFKDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 353 (391)
T ss_dssp HHHHHHHTTCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEE
T ss_pred HHHHHHhcCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEE
Confidence 999999986554 899999999999999999999999999999999999999999987766554
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=2.1e-28 Score=273.81 Aligned_cols=314 Identities=17% Similarity=0.202 Sum_probs=211.9
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|+|||++++.+++. +.+.+|++.+||+|||++++..+..++... ...++|||||+ .|+.||.++
T Consensus 28 ~~~~~Q~~~i~~~~~---------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~lil~P~~~L~~q~~~~ 93 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---------DEYNIVAQARTGSGKTASFAIPLIELVNEN-----NGIEAIILTPTRELAIQVADE 93 (367)
T ss_dssp SCCHHHHHHHHHHHH---------TCSEEEEECCSSSSHHHHHHHHHHHHSCSS-----SSCCEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCCEEEECCCCChHHHHHHHHHHHHhccc-----CCCcEEEEcCCHHHHHHHHHH
Confidence 578999999999864 235779999999999999888877665432 23579999998 778999999
Q ss_pred HHHHhCC-CeEEEEecCCcch-hhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccchh
Q 043990 262 IKKWVGG-RVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~-~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
+.++++. .+.+..+.++... .....+ ...+|+|+||+.+...... ......+++||+||||++.+...
T Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~-- 164 (367)
T 1hv8_A 94 IESLKGNKNLKIAKIYGGKAIYPQIKAL-------KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGF-- 164 (367)
T ss_dssp HHHHHCSSCCCEEEECTTSCHHHHHHHH-------HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTT--
T ss_pred HHHHhCCCCceEEEEECCcchHHHHhhc-------CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhch--
Confidence 9999875 3455555544332 111111 1357999999998654432 11245789999999999844211
Q ss_pred ccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc
Q 043990 339 NRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK 418 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k 418 (911)
. ..+..++. .+++.
T Consensus 165 ----~-------------------------------------------------~~~~~~~~-------------~~~~~ 178 (367)
T 1hv8_A 165 ----I-------------------------------------------------KDVEKILN-------------ACNKD 178 (367)
T ss_dssp ----H-------------------------------------------------HHHHHHHH-------------TSCSS
T ss_pred ----H-------------------------------------------------HHHHHHHH-------------hCCCC
Confidence 0 00111110 12111
Q ss_pred EEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcc
Q 043990 419 IIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498 (911)
Q Consensus 419 ~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e 498 (911)
..++.+.-|+... ... .++.....+..+..... .... ..
T Consensus 179 -~~~i~~SAT~~~~-~~~--------------------------~~~~~~~~~~~~~~~~~------~~~~-------~~ 217 (367)
T 1hv8_A 179 -KRILLFSATMPRE-ILN--------------------------LAKKYMGDYSFIKAKIN------ANIE-------QS 217 (367)
T ss_dssp -CEEEEECSSCCHH-HHH--------------------------HHHHHCCSEEEEECCSS------SSSE-------EE
T ss_pred -ceEEEEeeccCHH-HHH--------------------------HHHHHcCCCeEEEecCC------CCce-------EE
Confidence 1233333333211 000 01111111111100000 0000 00
Q ss_pred cccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Q 043990 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578 (911)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~i 578 (911)
. .......|+..|.+++. ..+.++|||++....++.+...|...|+.+..++|+++..+|.++
T Consensus 218 ~-------------~~~~~~~~~~~l~~~l~----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 280 (367)
T 1hv8_A 218 Y-------------VEVNENERFEALCRLLK----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKV 280 (367)
T ss_dssp E-------------EECCGGGHHHHHHHHHC----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHH
T ss_pred E-------------EEeChHHHHHHHHHHHh----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHH
Confidence 0 01123567766666654 367899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 579 v~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
++.|+++... +|++|.++++|+|++++++||+|+++||+..+.|++||++|.|+...|+++ +...
T Consensus 281 ~~~f~~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~--~~~~ 345 (367)
T 1hv8_A 281 IRLFKQKKIR---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISI--INRR 345 (367)
T ss_dssp HHHHHTTSSS---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEE--ECTT
T ss_pred HHHHHcCCCe---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEE--EcHH
Confidence 9999986544 899999999999999999999999999999999999999999988766554 5554
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.96 E-value=3.5e-28 Score=276.34 Aligned_cols=318 Identities=18% Similarity=0.193 Sum_probs=213.8
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|+|||.+++.+++. .+.+|+..+||+|||++++..+...+... ....++|||||+ .|+.||.++
T Consensus 43 ~~~~~Q~~~i~~i~~----------~~~~li~a~TGsGKT~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~ 108 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----------GRDILARAKNGTGKTAAFVIPTLEKVKPK----LNKIQALIMVPTRELALQTSQV 108 (400)
T ss_dssp SCCHHHHHHHHHHHH----------TCCEEEECCTTSCHHHHHHHHHHHHCCTT----SCSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc----------CCCEEEECCCCcHHHHHHHHHHHHHHhhc----cCCccEEEEcCCHHHHHHHHHH
Confidence 478999999999874 24679999999999998887776654332 123479999998 788999999
Q ss_pred HHHHhCC-CeEEEEecCCcchh-hhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccchh
Q 043990 262 IKKWVGG-RVQLIALCESTRDD-VVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~-~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
+.++... .+.+..+.+..... ....+ ...++|+|+|++.+..... .......+++||+||||++.+..
T Consensus 109 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~--- 179 (400)
T 1s2m_A 109 VRTLGKHCGISCMVTTGGTNLRDDILRL------NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD--- 179 (400)
T ss_dssp HHHHTTTTTCCEEEECSSSCHHHHHHHT------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH---
T ss_pred HHHHhcccCceEEEEeCCcchHHHHHHh------cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc---
Confidence 9999764 45555555544322 11111 1356899999999854332 22234678999999999874311
Q ss_pred ccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc
Q 043990 339 NRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK 418 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k 418 (911)
|.. .+..++ ..+|+.
T Consensus 180 -------------------------~~~---------------------------~~~~i~-------------~~~~~~ 194 (400)
T 1s2m_A 180 -------------------------FKT---------------------------IIEQIL-------------SFLPPT 194 (400)
T ss_dssp -------------------------HHH---------------------------HHHHHH-------------TTSCSS
T ss_pred -------------------------hHH---------------------------HHHHHH-------------HhCCcC
Confidence 100 011111 123322
Q ss_pred -EEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 419 -IIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 419 -~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
........+++....... .....|..+... .. ........
T Consensus 195 ~~~i~lSAT~~~~~~~~~~-----------------------------~~~~~~~~~~~~--~~-~~~~~~~~------- 235 (400)
T 1s2m_A 195 HQSLLFSATFPLTVKEFMV-----------------------------KHLHKPYEINLM--EE-LTLKGITQ------- 235 (400)
T ss_dssp CEEEEEESCCCHHHHHHHH-----------------------------HHCSSCEEESCC--SS-CBCTTEEE-------
T ss_pred ceEEEEEecCCHHHHHHHH-----------------------------HHcCCCeEEEec--cc-cccCCcee-------
Confidence 222223333332111111 111112111000 00 00000000
Q ss_pred ccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Q 043990 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577 (911)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~ 577 (911)
. ........|+..+..++... .+.++|||++....++.+...|...|+.+..++|.++..+|..
T Consensus 236 -~------------~~~~~~~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 299 (400)
T 1s2m_A 236 -Y------------YAFVEERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNK 299 (400)
T ss_dssp -E------------EEECCGGGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHH
T ss_pred -E------------EEEechhhHHHHHHHHHhhc---CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHH
Confidence 0 01122367888888887763 4679999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 578 iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
+++.|+++... +|++|.++++|+|++++++||+||++||+..+.|++||++|.|+...| |.|+...
T Consensus 300 ~~~~f~~g~~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~l~~~~ 365 (400)
T 1s2m_A 300 VFHEFRQGKVR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA--INLINWN 365 (400)
T ss_dssp HHHHHHTTSSS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEE--EEEECGG
T ss_pred HHHHHhcCCCc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceE--EEEeccc
Confidence 99999986544 899999999999999999999999999999999999999999987554 4456554
No 19
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.96 E-value=4.7e-29 Score=299.08 Aligned_cols=348 Identities=15% Similarity=0.157 Sum_probs=196.0
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCC--CCCCCceEEEEeC-chhhHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFD--GKPMVKKAIIVTP-TSLVSN 257 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~--~~p~~~~~LIV~P-~sLl~q 257 (911)
...|||||.+|+.++++.+. .+.+++||+++||+|||++++.+++.++..+.. .....+++||||| ..|+.|
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~-----~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q 250 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVL-----QGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDD 250 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHH-----TTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-------
T ss_pred CCCchHHHHHHHHHHHHHHh-----cCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHH
Confidence 45899999999999987542 244568999999999999999999988876521 1113568999999 588899
Q ss_pred HH-HHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc------ccccCCCCcEEEEcCccc
Q 043990 258 WE-AEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS------KFSCSESCDLLICDEAHR 330 (911)
Q Consensus 258 W~-~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~------~~~~~~~~~lVIlDEAH~ 330 (911)
|. +++.+|... .. .+.+.. .....+|+|+||+++..... .+. ...|++||+||||+
T Consensus 251 ~~~~~~~~~~~~-~~--~~~~~~-------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~-~~~~~lvIiDEaH~ 313 (590)
T 3h1t_A 251 PKDKTFTPFGDA-RH--KIEGGK-------------VVKSREIYFAIYQSIASDERRPGLYKEFP-QDFFDLIIIDECHR 313 (590)
T ss_dssp ----CCTTTCSS-EE--ECCC---------------CCSSCSEEEEEGGGC------CCGGGGSC-TTSCSEEEESCCC-
T ss_pred HHHHHHHhcchh-hh--hhhccC-------------CCCCCcEEEEEhhhhccccccccccccCC-CCccCEEEEECCcc
Confidence 99 777776432 21 122111 11346899999999865431 222 45699999999999
Q ss_pred cCCccchhccCCHHHHHHhhh------hc-CCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHh
Q 043990 331 LKNDQTLTNRNDLEEFFAMVN------FT-NPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFI 403 (911)
Q Consensus 331 lKN~~s~~~~N~l~El~sLl~------fl-~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~i 403 (911)
+.+..... +..+...+. |. .|. -.........|..+ +
T Consensus 314 ~~~~~~~~----~~~il~~~~~~~~l~lTATP~-~~~~~~~~~~f~~~-------------------------------~ 357 (590)
T 3h1t_A 314 GSARDNSN----WREILEYFEPAFQIGMTATPL-REDNRDTYRYFGNP-------------------------------I 357 (590)
T ss_dssp ------------CHHHHHHSTTSEEEEEESSCS-CTTTHHHHHHSCSC-------------------------------S
T ss_pred ccccchHH----HHHHHHhCCcceEEEeccccc-cccchhHHHHcCCc-------------------------------e
Confidence 97643211 111211111 00 011 01111122222211 1
Q ss_pred hhhc-HHHH-hccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhh-hhHhhHHHHHHHHHHHhcChhhhHhhhhc
Q 043990 404 LRRT-NALL-SNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEE-TKQSKILAYITALKKLCNHPKLIYDTIKS 480 (911)
Q Consensus 404 lRRt-k~~v-~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~-~~~~~~l~~l~~LrklcnhP~Ll~~~~~~ 480 (911)
.... ...+ ...+++.....+................... ...+... .....+-.
T Consensus 358 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------------- 414 (590)
T 3h1t_A 358 YTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRF--GREIPDGEYQTKDFER--------------------- 414 (590)
T ss_dssp EEECHHHHHHHTSSCCEEEEEEEETTCC-------------------------CCSHHH---------------------
T ss_pred EecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccc--ccccccccCCHHHhhh---------------------
Confidence 1111 1111 1234554444444443322111111000000 0000000 00000000
Q ss_pred CCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHH----HHHHHHhhcCCCeEEEEEcchHHHHHHHHHH
Q 043990 481 GNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLA----RLLGHLRQRTDDRIVLVSNYTQTLDLFAQLC 556 (911)
Q Consensus 481 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~----~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L 556 (911)
......+...+. +++... ..+.|+||||++..+++.+...|
T Consensus 415 ---------------------------------~~~~~~r~~~i~~~l~~~l~~~--~~~~k~lVF~~~~~~a~~l~~~L 459 (590)
T 3h1t_A 415 ---------------------------------VIALKARTDAFAKHLTDFMKRT--DRFAKTIVFCVDQEHADEMRRAL 459 (590)
T ss_dssp ---------------------------------HHHHHHTHHHHHHHHHHHHHHH--CTTSEEEEEESSHHHHHHHHHHH
T ss_pred ---------------------------------HhcChHHHHHHHHHHHHHHHhc--CCCccEEEEECCHHHHHHHHHHH
Confidence 000012222222 223322 24689999999999999999999
Q ss_pred HHcCCC--------EEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHH
Q 043990 557 RERRYP--------YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA 628 (911)
Q Consensus 557 ~~~gi~--------~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAig 628 (911)
...+.. +..++|.++. +|.+++++|++++....++|+|++++++|+|++.+++||+++++||+..+.|++|
T Consensus 460 ~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iG 538 (590)
T 3h1t_A 460 NNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVG 538 (590)
T ss_dssp HHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHT
T ss_pred HHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHh
Confidence 876543 6789999873 6999999999877666789999999999999999999999999999999999999
Q ss_pred hhhhcCC---cccEEEEEEE
Q 043990 629 RVWRDGQ---KKRVFIYRFL 645 (911)
Q Consensus 629 R~~RiGQ---kk~V~VyrLi 645 (911)
|++|.|+ +..+.||.++
T Consensus 539 R~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 539 RGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TSCCCBGGGTBSCEEEEECS
T ss_pred hhcccCccCCCCEEEEEecC
Confidence 9999995 6778898877
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=8.3e-28 Score=274.35 Aligned_cols=320 Identities=18% Similarity=0.204 Sum_probs=212.3
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++.++++ .+.+|++.+||+|||++++..+...+... ....++|||||+ .|+.||.++
T Consensus 59 ~~~~~Q~~ai~~i~~----------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----~~~~~~lil~Pt~~L~~q~~~~ 124 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----------GRDVIAQSQSGTGKTATFSISVLQCLDIQ----VRETQALILAPTRELAVQIQKG 124 (410)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHHTCCTT----SCSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEECCCCCCchHHHHHHHHHHHhhc----cCCceEEEEcCcHHHHHHHHHH
Confidence 589999999999863 24689999999999999887776654322 124589999998 688999999
Q ss_pred HHHHhCC-CeEEEEecCCcch-hhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccchh
Q 043990 262 IKKWVGG-RVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~-~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
+.+|... .+.+....++... .....+. ...+|+|+|++.+...... ......+++||+||||++.+...
T Consensus 125 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~-- 196 (410)
T 2j0s_A 125 LLALGDYMNVQCHACIGGTNVGEDIRKLD------YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGF-- 196 (410)
T ss_dssp HHHHTTTTTCCEEEECTTSCHHHHHHHHH------HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTT--
T ss_pred HHHHhccCCeEEEEEECCCCHHHHHHHhh------cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhh--
Confidence 9998753 3455554444322 2111111 2357999999988544322 22245789999999999865321
Q ss_pred ccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCC-
Q 043990 339 NRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPP- 417 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~- 417 (911)
...+..++.+ +|+
T Consensus 197 ----~~~~~~i~~~--------------------------------------------------------------~~~~ 210 (410)
T 2j0s_A 197 ----KEQIYDVYRY--------------------------------------------------------------LPPA 210 (410)
T ss_dssp ----HHHHHHHHTT--------------------------------------------------------------SCTT
T ss_pred ----HHHHHHHHHh--------------------------------------------------------------CccC
Confidence 1122222222 222
Q ss_pred cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 418 KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 418 k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
.........+++....+... ....|..+...... .........
T Consensus 211 ~~~i~~SAT~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~--~~~~~~~~~------ 253 (410)
T 2j0s_A 211 TQVVLISATLPHEILEMTNK-----------------------------FMTDPIRILVKRDE--LTLEGIKQF------ 253 (410)
T ss_dssp CEEEEEESCCCHHHHTTGGG-----------------------------TCSSCEEECCCGGG--CSCTTEEEE------
T ss_pred ceEEEEEcCCCHHHHHHHHH-----------------------------HcCCCEEEEecCcc--ccCCCceEE------
Confidence 22233334444321111000 00111110000000 000000000
Q ss_pred ccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Q 043990 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577 (911)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~ 577 (911)
.. .......|+..|..++... ...++|||++....++.+...|...|+.+..++|+++..+|.+
T Consensus 254 -~~------------~~~~~~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~ 317 (410)
T 2j0s_A 254 -FV------------AVEREEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERES 317 (410)
T ss_dssp -EE------------EESSTTHHHHHHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHH
T ss_pred -EE------------EeCcHHhHHHHHHHHHHhc---CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHH
Confidence 00 0011234778888887765 3579999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 578 iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
++++|+++... +|++|+++++|+|++++++||+||++|++..+.||+||++|.|++..|+ .|+...
T Consensus 318 ~~~~f~~g~~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~--~~~~~~ 383 (410)
T 2j0s_A 318 IMKEFRSGASR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAI--NFVKND 383 (410)
T ss_dssp HHHHHHHTSSC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE--EEEEGG
T ss_pred HHHHHHCCCCC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEE--EEecHH
Confidence 99999986544 8999999999999999999999999999999999999999999876544 455544
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=1.7e-28 Score=271.40 Aligned_cols=314 Identities=15% Similarity=0.217 Sum_probs=204.0
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|+|||++++.++.+ .+.+++..+||+|||++++..+... ..++|||||+ .|+.||.++
T Consensus 16 ~l~~~Q~~~i~~i~~----------~~~~lv~~~TGsGKT~~~~~~~~~~----------~~~~liv~P~~~L~~q~~~~ 75 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ----------GKNVVVRAKTGSGKTAAYAIPILEL----------GMKSLVVTPTRELTRQVASH 75 (337)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc----------CCCEEEEcCCCCcHHHHHHHHHHhh----------cCCEEEEeCCHHHHHHHHHH
Confidence 578999999999863 2468999999999999887776542 2479999998 788999999
Q ss_pred HHHHhCC-CeEEEEecCCcchh-hhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccchh
Q 043990 262 IKKWVGG-RVQLIALCESTRDD-VVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~-~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
+.+|... ...+..+.++.... ....+ ...+|+|+|++.+...... ......|++||+||||++.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~-- 146 (337)
T 2z0m_A 76 IRDIGRYMDTKVAEVYGGMPYKAQINRV-------RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGF-- 146 (337)
T ss_dssp HHHHTTTSCCCEEEECTTSCHHHHHHHH-------TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTC--
T ss_pred HHHHhhhcCCcEEEEECCcchHHHHhhc-------CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcccc--
Confidence 9999753 34555555543321 11111 2367999999998654321 11245789999999998733210
Q ss_pred ccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc
Q 043990 339 NRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK 418 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k 418 (911)
. ..+..++. .++..
T Consensus 147 ----~-------------------------------------------------~~~~~~~~-------------~~~~~ 160 (337)
T 2z0m_A 147 ----I-------------------------------------------------DDIKIILA-------------QTSNR 160 (337)
T ss_dssp ----H-------------------------------------------------HHHHHHHH-------------HCTTC
T ss_pred ----H-------------------------------------------------HHHHHHHh-------------hCCcc
Confidence 0 01111111 12222
Q ss_pred -EEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 419 -IIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 419 -~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
........+.+........+ ...+..+.... .... ...
T Consensus 161 ~~~~~~SAT~~~~~~~~~~~~-----------------------------~~~~~~~~~~~--------~~~~----~~~ 199 (337)
T 2z0m_A 161 KITGLFSATIPEEIRKVVKDF-----------------------------ITNYEEIEACI--------GLAN----VEH 199 (337)
T ss_dssp SEEEEEESCCCHHHHHHHHHH-----------------------------SCSCEEEECSG--------GGGG----EEE
T ss_pred cEEEEEeCcCCHHHHHHHHHh-----------------------------cCCceeeeccc--------ccCC----ceE
Confidence 22222333433222222111 11111000000 0000 000
Q ss_pred ccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Q 043990 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577 (911)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~ 577 (911)
.. .....+.... +..+....+.++|||++....++.+...|. .+..++|+++..+|.+
T Consensus 200 ~~---------------~~~~~~~~~~---~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~ 257 (337)
T 2z0m_A 200 KF---------------VHVKDDWRSK---VQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNR 257 (337)
T ss_dssp EE---------------EECSSSSHHH---HHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHH
T ss_pred EE---------------EEeChHHHHH---HHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHH
Confidence 00 0001111111 223333467899999999999999988876 5789999999999999
Q ss_pred HHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHH
Q 043990 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQR 657 (911)
Q Consensus 578 iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~r 657 (911)
++++|+++... +|++|+++++|+|++++++||+|+++|++..+.|++||++|.||+..|++|.. ...++.++|.+.
T Consensus 258 ~~~~f~~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~ 333 (337)
T 2z0m_A 258 NIDAFREGEYD---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKV 333 (337)
T ss_dssp HHHHHHTTSCS---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC--
T ss_pred HHHHHHcCCCc---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHH
Confidence 99999986554 89999999999999999999999999999999999999999999988888876 555566666544
Q ss_pred H
Q 043990 658 Q 658 (911)
Q Consensus 658 q 658 (911)
.
T Consensus 334 ~ 334 (337)
T 2z0m_A 334 S 334 (337)
T ss_dssp -
T ss_pred h
Confidence 4
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.95 E-value=7.4e-27 Score=263.89 Aligned_cols=316 Identities=14% Similarity=0.151 Sum_probs=207.3
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++.+++. ...+.+|++.+||+|||++++..+...+.... ...++|||||+ .|+.||.++
T Consensus 27 ~~~~~Q~~~i~~~~~--------~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~ 94 (395)
T 3pey_A 27 KPSKIQERALPLLLH--------NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED----ASPQAICLAPSRELARQTLEV 94 (395)
T ss_dssp SCCHHHHHHHHHHHC--------SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--------CCCCeEEEECCCCCcHHHHHHHHHHHHhccCC----CCccEEEECCCHHHHHHHHHH
Confidence 577999999999863 12367899999999999998877766543321 24579999998 588999999
Q ss_pred HHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccchhc
Q 043990 262 IKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
+.++... .+.+....+...... .....+|+|+|++.+..... .......+++||+||||++.+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~--- 162 (395)
T 3pey_A 95 VQEMGKFTKITSQLIVPDSFEKN---------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQG--- 162 (395)
T ss_dssp HHHHTTTSCCCEEEESTTSSCTT---------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTT---
T ss_pred HHHHhcccCeeEEEEecCchhhh---------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccc---
Confidence 9998753 333443333322111 11246899999999854432 222246799999999999733110
Q ss_pred cCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc-
Q 043990 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK- 418 (911)
Q Consensus 340 ~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k- 418 (911)
|. ..+..+ ...+|+.
T Consensus 163 ------------------------~~---------------------------~~~~~~-------------~~~~~~~~ 178 (395)
T 3pey_A 163 ------------------------LG---------------------------DQCIRV-------------KRFLPKDT 178 (395)
T ss_dssp ------------------------HH---------------------------HHHHHH-------------HHTSCTTC
T ss_pred ------------------------cH---------------------------HHHHHH-------------HHhCCCCc
Confidence 00 000000 0123322
Q ss_pred EEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcc
Q 043990 419 IIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498 (911)
Q Consensus 419 ~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e 498 (911)
........+++....+... ....+..+........ .......
T Consensus 179 ~~i~~SAT~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~--~~~~~~~------- 220 (395)
T 3pey_A 179 QLVLFSATFADAVRQYAKK-----------------------------IVPNANTLELQTNEVN--VDAIKQL------- 220 (395)
T ss_dssp EEEEEESCCCHHHHHHHHH-----------------------------HSCSCEEECCCGGGCS--CTTEEEE-------
T ss_pred EEEEEEecCCHHHHHHHHH-----------------------------hCCCCeEEEccccccc--cccccEE-------
Confidence 2222233333322222111 1111111100000000 0000000
Q ss_pred cccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Q 043990 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578 (911)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~i 578 (911)
. ........|...+..++... .+.++|||++....++.+...|...|+.+..++|+++..+|.++
T Consensus 221 ~------------~~~~~~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~ 285 (395)
T 3pey_A 221 Y------------MDCKNEADKFDVLTELYGLM---TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 285 (395)
T ss_dssp E------------EECSSHHHHHHHHHHHHTTT---TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHH
T ss_pred E------------EEcCchHHHHHHHHHHHHhc---cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Confidence 0 00011245666666665543 46899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCC------CcchHHHHHHhhhhcCCcccEEEE
Q 043990 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDW------NPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 579 v~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~W------NPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+++|+++... +|++|.++++|+|++++++||+||++| ++..+.|++||++|.|++..++++
T Consensus 286 ~~~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 286 IDDFREGRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp HHHHHTTSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred HHHHHCCCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 9999986554 899999999999999999999999999 999999999999999987666554
No 23
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.95 E-value=1.1e-26 Score=268.28 Aligned_cols=321 Identities=15% Similarity=0.183 Sum_probs=210.0
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHH-hcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLL-CQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll-~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
.++|+|.+++..+.. .+.+|+..+||+|||++++..+...+ ...........++|||||+ .|+.||.+
T Consensus 78 ~pt~iQ~~ai~~i~~----------g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 147 (434)
T 2db3_A 78 IPTPIQKCSIPVISS----------GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFN 147 (434)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc----------CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHH
Confidence 578999999998853 25679999999999998776665444 3332112223579999998 68899999
Q ss_pred HHHHHhCC-CeEEEEecCCcch-hhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccch
Q 043990 261 EIKKWVGG-RVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~r~-~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
++.++... .+.+..++++... .....+ ...++|+|+|++.+...... ......+++||+||||++.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~g-- 219 (434)
T 2db3_A 148 EARKFAFESYLKIGIVYGGTSFRHQNECI------TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMG-- 219 (434)
T ss_dssp HHHHHTTTSSCCCCEECTTSCHHHHHHHH------TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTT--
T ss_pred HHHHHhccCCcEEEEEECCCCHHHHHHHh------hcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccC--
Confidence 99999754 3444444444332 221111 13468999999998654332 1224678999999999984421
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPP 417 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~ 417 (911)
|. ..+..++..+. .-+.
T Consensus 220 --------------------------f~---------------------------~~~~~i~~~~~----------~~~~ 236 (434)
T 2db3_A 220 --------------------------FS---------------------------EDMRRIMTHVT----------MRPE 236 (434)
T ss_dssp --------------------------TH---------------------------HHHHHHHHCTT----------SCSS
T ss_pred --------------------------cH---------------------------HHHHHHHHhcC----------CCCC
Confidence 10 11111111100 0122
Q ss_pred cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCc
Q 043990 418 KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPP 497 (911)
Q Consensus 418 k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~ 497 (911)
.........+++.-..+... ....|..+...... .........
T Consensus 237 ~q~l~~SAT~~~~~~~~~~~-----------------------------~l~~~~~i~~~~~~--~~~~~i~~~------ 279 (434)
T 2db3_A 237 HQTLMFSATFPEEIQRMAGE-----------------------------FLKNYVFVAIGIVG--GACSDVKQT------ 279 (434)
T ss_dssp CEEEEEESCCCHHHHHHHHT-----------------------------TCSSCEEEEESSTT--CCCTTEEEE------
T ss_pred ceEEEEeccCCHHHHHHHHH-----------------------------hccCCEEEEecccc--ccccccceE------
Confidence 22223333333321111110 11111111000000 000000000
Q ss_pred ccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Q 043990 498 EMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQK 577 (911)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~ 577 (911)
........|...|.+++... +.++|||++....++.+...|...|+++..++|++++.+|.+
T Consensus 280 --------------~~~~~~~~k~~~l~~~l~~~----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 341 (434)
T 2db3_A 280 --------------IYEVNKYAKRSKLIEILSEQ----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQ 341 (434)
T ss_dssp --------------EEECCGGGHHHHHHHHHHHC----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHH
T ss_pred --------------EEEeCcHHHHHHHHHHHHhC----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 00122356777777777653 345999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 578 LVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 578 iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
++++|+++... +|++|+++++|||++++++||+||++|++..|.||+||++|.|++..+++|
T Consensus 342 ~l~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 342 ALRDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp HHHHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred HHHHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 99999986554 899999999999999999999999999999999999999999987665554
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=8.6e-29 Score=280.17 Aligned_cols=314 Identities=16% Similarity=0.172 Sum_probs=98.7
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|+|||++++.+++. .+.+++..+||+|||++++..++..+... ....++|||||+ .|+.||.++
T Consensus 43 ~~~~~Q~~~i~~i~~----------~~~~lv~~~TGsGKT~~~~~~~~~~l~~~----~~~~~~lil~P~~~L~~q~~~~ 108 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIE----------GHDVLAQAQSGTGKTGTFSIAALQRIDTS----VKAPQALMLAPTRELALQIQKV 108 (394)
T ss_dssp SCCHHHHHHHHHHHH----------TCCEEECCCSSHHHHHHHHHHHHHHCCTT----CCSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEECCCCChHHHHHHHHHHHHhhcc----CCCCCEEEEcCCHHHHHHHHHH
Confidence 688999999999875 24679999999999999776665544332 124589999998 788999999
Q ss_pred HHHHhCC-CeEEEEecCCcchh-hhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccchh
Q 043990 262 IKKWVGG-RVQLIALCESTRDD-VVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~-~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
+.++... .+.+..+.++.... ....+ ...+|+|+|++.+...... ......+++||+||||++.+...
T Consensus 109 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~-- 179 (394)
T 1fuu_A 109 VMALAFHMDIKVHACIGGTSFVEDAEGL-------RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGF-- 179 (394)
T ss_dssp HHHHTTTSCCCEEEECSSCCHHHHHHHH-------HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTC--
T ss_pred HHHHhccCCeeEEEEeCCCchHHHHhhc-------CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCc--
Confidence 9999764 45555555543321 11111 1357999999998544321 12245789999999999733211
Q ss_pred ccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc
Q 043990 339 NRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK 418 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k 418 (911)
...+..++.. +++.
T Consensus 180 ----~~~~~~~~~~--------------------------------------------------------------~~~~ 193 (394)
T 1fuu_A 180 ----KEQIYQIFTL--------------------------------------------------------------LPPT 193 (394)
T ss_dssp ----HHHHHHHHHH--------------------------------------------------------------SCTT
T ss_pred ----HHHHHHHHHh--------------------------------------------------------------CCCC
Confidence 1111111111 1111
Q ss_pred EEEEEEecCC--HHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC
Q 043990 419 IIEVVCCKLT--PLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP 496 (911)
Q Consensus 419 ~~~vv~~~ls--~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~ 496 (911)
. .++.+.-| +....+... ....|..+..... ........ ..
T Consensus 194 ~-~~i~~SAT~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~--~~~~~~~~---~~-- 236 (394)
T 1fuu_A 194 T-QVVLLSATMPNDVLEVTTK-----------------------------FMRNPVRILVKKD--ELTLEGIK---QF-- 236 (394)
T ss_dssp C-EEEEECSSCCHHHHHHHHH-----------------------------HCCSCEEEEECC------------------
T ss_pred c-eEEEEEEecCHHHHHHHHH-----------------------------hcCCCeEEEecCc--cccCCCce---EE--
Confidence 1 12222222 111111110 0111110000000 00000000 00
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~ 576 (911)
. ........|...+..++... .+.++|||++....++.+...|...|+.+..++|+++..+|.
T Consensus 237 --~------------~~~~~~~~~~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 299 (394)
T 1fuu_A 237 --Y------------VNVEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD 299 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --E------------EEcCchhhHHHHHHHHHhcC---CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHH
Confidence 0 00000123555666666543 357999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
++++.|+++.. .+|++|.++++|+|++++++||+|+++|++..+.|++||++|.|++..|++|
T Consensus 300 ~~~~~f~~~~~---~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 362 (394)
T 1fuu_A 300 TIMKEFRSGSS---RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 362 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHCCCC---cEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEE
Confidence 99999997544 4899999999999999999999999999999999999999999987766554
No 25
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.95 E-value=7e-27 Score=266.46 Aligned_cols=320 Identities=15% Similarity=0.140 Sum_probs=197.1
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..++. .+.+|++.+||+|||++++..++..+.... ...++|||||+ .|+.||.++
T Consensus 62 ~~~~~Q~~~i~~~~~----------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~ 127 (414)
T 3eiq_A 62 KPSAIQQRAILPCIK----------GYDVIAQAQSGTGKTATFAISILQQIELDL----KATQALVLAPTRELAQQIQKV 127 (414)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEECCCSCSSSHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHhHHHhC----------CCCEEEECCCCCcccHHHHHHHHHHHhhcC----CceeEEEEeChHHHHHHHHHH
Confidence 578999999998863 245799999999999998777766543321 24579999998 688999999
Q ss_pred HHHHhCC-CeEEEEecCCcc-hhhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccchh
Q 043990 262 IKKWVGG-RVQLIALCESTR-DDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTLT 338 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r-~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~~ 338 (911)
+.++... ...+....++.. ......+. ...++|+|+|++.+...... ......+++||+||||++.+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~-- 200 (414)
T 3eiq_A 128 VMALGDYMGASCHACIGGTNVRAEVQKLQ-----MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGF-- 200 (414)
T ss_dssp HHHHGGGSCCCEEECCCCTTHHHHHHHHT-----TTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTT--
T ss_pred HHHHhcccCceEEEEECCcchHHHHHHHh-----cCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCc--
Confidence 9999753 334444443322 22211111 13468999999988544322 22245689999999999733210
Q ss_pred ccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCc
Q 043990 339 NRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPK 418 (911)
Q Consensus 339 ~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k 418 (911)
. ..+..++ ..+++.
T Consensus 201 ----~-------------------------------------------------~~~~~~~-------------~~~~~~ 214 (414)
T 3eiq_A 201 ----K-------------------------------------------------DQIYDIF-------------QKLNSN 214 (414)
T ss_dssp ----H-------------------------------------------------HHHHHHH-------------TTSCTT
T ss_pred ----H-------------------------------------------------HHHHHHH-------------HhCCCC
Confidence 0 0111111 122222
Q ss_pred EEEEEEecCCHH--HHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC
Q 043990 419 IIEVVCCKLTPL--QSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP 496 (911)
Q Consensus 419 ~~~vv~~~ls~~--Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~ 496 (911)
. .++.+.-|+. ...+ ++....+|..+.... .........
T Consensus 215 ~-~~i~~SAT~~~~~~~~-----------------------------~~~~~~~~~~~~~~~--~~~~~~~~~------- 255 (414)
T 3eiq_A 215 T-QVVLLSATMPSDVLEV-----------------------------TKKFMRDPIRILVKK--EELTLEGIR------- 255 (414)
T ss_dssp C-EEEEECSCCCHHHHHH-----------------------------HTTTCSSCEEECCCC--CCCCTTSCC-------
T ss_pred C-eEEEEEEecCHHHHHH-----------------------------HHHHcCCCEEEEecC--CccCCCCce-------
Confidence 1 2333333321 1111 111112222111000 000000000
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~ 576 (911)
.... .......|+..+..++... .+.++|||++....++.+...|...|+.+..++|+++..+|.
T Consensus 256 ~~~~------------~~~~~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~ 320 (414)
T 3eiq_A 256 QFYI------------NVEREEWKLDTLCDLYETL---TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERD 320 (414)
T ss_dssp EEEE------------ECSSSTTHHHHHHHHHHSS---CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHH
T ss_pred EEEE------------EeChHHhHHHHHHHHHHhC---CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHH
Confidence 0000 0011234777777776653 467999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
++++.|+++.. .+|++|.++++|||++++++||+||++||+..+.|++||++|.|+...|+ .|+...
T Consensus 321 ~~~~~f~~g~~---~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~--~~~~~~ 387 (414)
T 3eiq_A 321 VIMREFRSGSS---RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAI--NMVTEE 387 (414)
T ss_dssp HHHHHHSCC------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEE--EEECST
T ss_pred HHHHHHHcCCC---cEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEE--EEEcHH
Confidence 99999998654 48999999999999999999999999999999999999999999876554 455554
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=264.00 Aligned_cols=325 Identities=16% Similarity=0.229 Sum_probs=209.3
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHH-HHhcCCC-------------CCCCCceEEE
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT-LLCQGFD-------------GKPMVKKAII 248 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~-ll~~g~~-------------~~p~~~~~LI 248 (911)
.++|+|.+++..+.. .+.+|+..+||+|||+.++..+.. +...+.. ......++||
T Consensus 37 ~~~~~Q~~~i~~i~~----------~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 106 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKE----------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLV 106 (417)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEE
T ss_pred CCCHHHHHHHHHHcc----------CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEE
Confidence 577999999997752 356799999999999986655544 3332210 1112247999
Q ss_pred EeCc-hhhHHHHHHHHHHhCC-CeEEEEecCCcch-hhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEE
Q 043990 249 VTPT-SLVSNWEAEIKKWVGG-RVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLI 324 (911)
Q Consensus 249 V~P~-sLl~qW~~Ei~k~~~~-~~~v~~~~~~~r~-~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVI 324 (911)
|+|+ .|+.||.+++.++... .+.+..+.++... .....+ ....+|+|+|++.+...... ......+++||
T Consensus 107 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iV 180 (417)
T 2i4i_A 107 LAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL------ERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 180 (417)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH------TTCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred ECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh------hCCCCEEEEChHHHHHHHHcCCcChhhCcEEE
Confidence 9998 7889999999999754 4555555554332 222111 12468999999998654322 11245789999
Q ss_pred EcCccccCCccchhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhh
Q 043990 325 CDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFIL 404 (911)
Q Consensus 325 lDEAH~lKN~~s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~il 404 (911)
+||||++.... |. ..+..++..
T Consensus 181 iDEah~~~~~~----------------------------~~---------------------------~~~~~i~~~--- 202 (417)
T 2i4i_A 181 LDEADRMLDMG----------------------------FE---------------------------PQIRRIVEQ--- 202 (417)
T ss_dssp ESSHHHHHHTT----------------------------CH---------------------------HHHHHHHTS---
T ss_pred EEChhHhhccC----------------------------cH---------------------------HHHHHHHHh---
Confidence 99999873211 00 011111110
Q ss_pred hhcHHHHhccCCC-cEEEEEEe--cCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcC
Q 043990 405 RRTNALLSNHLPP-KIIEVVCC--KLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSG 481 (911)
Q Consensus 405 RRtk~~v~~~LP~-k~~~vv~~--~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~ 481 (911)
..+|+ ....++.+ .+++....+... ....|..+... ..
T Consensus 203 --------~~~~~~~~~~~i~~SAT~~~~~~~~~~~-----------------------------~~~~~~~~~~~--~~ 243 (417)
T 2i4i_A 203 --------DTMPPKGVRHTMMFSATFPKEIQMLARD-----------------------------FLDEYIFLAVG--RV 243 (417)
T ss_dssp --------SSCCCBTTBEEEEEESCCCHHHHHHHHH-----------------------------HCSSCEEEEEC----
T ss_pred --------ccCCCcCCcEEEEEEEeCCHHHHHHHHH-----------------------------HcCCCEEEEeC--CC
Confidence 02332 11223333 333322211111 11112111000 00
Q ss_pred CCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCC
Q 043990 482 NPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRY 561 (911)
Q Consensus 482 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi 561 (911)
......... .........|...|.+++.... .+.++|||++....++.+...|...|+
T Consensus 244 ~~~~~~i~~--------------------~~~~~~~~~~~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~ 301 (417)
T 2i4i_A 244 GSTSENITQ--------------------KVVWVEESDKRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGY 301 (417)
T ss_dssp --CCSSEEE--------------------EEEECCGGGHHHHHHHHHHTCC--TTCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred CCCccCceE--------------------EEEEeccHhHHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHCCC
Confidence 000000000 0011223568888888877642 478999999999999999999999999
Q ss_pred CEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEE
Q 043990 562 PYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 562 ~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~V 641 (911)
.+..++|.++.++|.+++++|+++... +|++|+++++|+|++++++||+||++|++..+.|++||++|.|+...++
T Consensus 302 ~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~- 377 (417)
T 2i4i_A 302 ACTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT- 377 (417)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEE-
T ss_pred CeeEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEE-
Confidence 999999999999999999999986554 8999999999999999999999999999999999999999999875544
Q ss_pred EEEEeC
Q 043990 642 YRFLST 647 (911)
Q Consensus 642 yrLi~~ 647 (911)
.|+..
T Consensus 378 -~~~~~ 382 (417)
T 2i4i_A 378 -SFFNE 382 (417)
T ss_dssp -EEECG
T ss_pred -EEEcc
Confidence 44543
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.94 E-value=2.4e-25 Score=253.41 Aligned_cols=331 Identities=14% Similarity=0.143 Sum_probs=211.5
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..++|||.+++..++. ...+.+|+..+||+|||++++..+...+..+. ...++|||+|+ .|+.||.+
T Consensus 46 ~~~~~~Q~~~i~~~~~--------~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~ 113 (412)
T 3fht_A 46 NRPSKIQENALPLMLA--------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----KYPQCLCLSPTYELALQTGK 113 (412)
T ss_dssp CSCCHHHHHHHHHHHS--------SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--------CCCCeEEEECCCCchHHHHHHHHHHHHhhhcC----CCCCEEEECCCHHHHHHHHH
Confidence 3689999999998863 12357899999999999998776665543321 23479999998 57799999
Q ss_pred HHHHHhCC--CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCCccc
Q 043990 261 EIKKWVGG--RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 261 Ei~k~~~~--~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
.+.++... ...+....+....... .....+|+|+|++.+...... ......+++||+||||++.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 185 (412)
T 3fht_A 114 VIEQMGKFYPELKLAYAVRGNKLERG--------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 185 (412)
T ss_dssp HHHHHTTTSTTCCEEEECTTCCCCTT--------CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTT
T ss_pred HHHHHHhhcccceEEEeecCcchhhh--------hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCC
Confidence 99988652 2344433333221111 113468999999999654422 22235789999999998732110
Q ss_pred hhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCC
Q 043990 337 LTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLP 416 (911)
Q Consensus 337 ~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP 416 (911)
|. ..+..+. ..++
T Consensus 186 ---------------------------~~---------------------------~~~~~~~-------------~~~~ 198 (412)
T 3fht_A 186 ---------------------------HQ---------------------------DQSIRIQ-------------RMLP 198 (412)
T ss_dssp ---------------------------TH---------------------------HHHHHHH-------------HTSC
T ss_pred ---------------------------cH---------------------------HHHHHHH-------------hhCC
Confidence 00 0000000 0122
Q ss_pred Cc-EEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcC
Q 043990 417 PK-IIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF 495 (911)
Q Consensus 417 ~k-~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~ 495 (911)
+. ........+++....+. ......|..+........ .......
T Consensus 199 ~~~~~i~~SAT~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~---- 243 (412)
T 3fht_A 199 RNCQMLLFSATFEDSVWKFA-----------------------------QKVVPDPNVIKLKREEET--LDTIKQY---- 243 (412)
T ss_dssp TTCEEEEEESCCCHHHHHHH-----------------------------HHHSSSCEEECCCGGGSS--CTTEEEE----
T ss_pred CCceEEEEEeecCHHHHHHH-----------------------------HHhcCCCeEEeecccccc--ccCceEE----
Confidence 22 22222233333211111 112222222111000000 0000000
Q ss_pred CcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Q 043990 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKR 575 (911)
Q Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R 575 (911)
. ........|+..|..++... .+.++|||++....++.+...|...|+.+..++|.++..+|
T Consensus 244 ---~------------~~~~~~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 305 (412)
T 3fht_A 244 ---Y------------VLCSSRDEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQR 305 (412)
T ss_dssp ---E------------EECSSHHHHHHHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHH
T ss_pred ---E------------EEcCChHHHHHHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHH
Confidence 0 00011245777777777654 46899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCc------chHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 043990 576 QKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNP------ANDKQAAARVWRDGQKKRVFIYRFLSTGT 649 (911)
Q Consensus 576 ~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNP------a~~~QAigR~~RiGQkk~V~VyrLi~~gT 649 (911)
.+++++|+++... +|++|.++++|+|++++++||+||++|++ ..+.|++||++|.|+...+++ |+. ..
T Consensus 306 ~~~~~~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~--~~~-~~ 379 (412)
T 3fht_A 306 AAVIERFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN--MVD-SK 379 (412)
T ss_dssp HHHHHHHHTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEE--EEC-SH
T ss_pred HHHHHHHHCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEE--EEc-Ch
Confidence 9999999986554 89999999999999999999999999977 599999999999997665544 333 23
Q ss_pred HHHHHHHHH
Q 043990 650 IEEKVYQRQ 658 (911)
Q Consensus 650 IEEkI~~rq 658 (911)
-+..++...
T Consensus 380 ~~~~~~~~i 388 (412)
T 3fht_A 380 HSMNILNRI 388 (412)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 334444444
No 28
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=1.4e-25 Score=268.23 Aligned_cols=337 Identities=17% Similarity=0.247 Sum_probs=208.3
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|+|||.+++..++. ...+.+|+..+||+|||++++..+...+..+....+...++|||+|+ .|+.||.++
T Consensus 43 ~~~~~Q~~~i~~il~--------~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~ 114 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE 114 (579)
T ss_dssp SCCHHHHHHHHHHHC--------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--------cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHH
Confidence 478999999988752 12457799999999999998777766655543222234579999998 788999999
Q ss_pred HHHHhC-----CCeEEEEecCC-cchhhhccCcccCCCCCCccEEEEehHHHHhhcccc--ccCCCCcEEEEcCccccCC
Q 043990 262 IKKWVG-----GRVQLIALCES-TRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKF--SCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 262 i~k~~~-----~~~~v~~~~~~-~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~--~~~~~~~lVIlDEAH~lKN 333 (911)
+.+++. ....+..+.++ ........+.. ..++|+|+|++.+....... .....+++||+||||++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-----~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 189 (579)
T 3sqw_A 115 VKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK-----LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE 189 (579)
T ss_dssp HHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHH-----HCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS
T ss_pred HHHHHhhcccccceEEEEEECCccHHHHHHHHhc-----CCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhc
Confidence 999863 12333333333 32222222111 23679999999986544321 1245689999999999844
Q ss_pred ccchhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhc
Q 043990 334 DQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSN 413 (911)
Q Consensus 334 ~~s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~ 413 (911)
.. |...+ ..+...+... ...
T Consensus 190 ~g----------------------------f~~~~------------------------~~i~~~l~~~--------~~~ 209 (579)
T 3sqw_A 190 IG----------------------------FRDDL------------------------ETISGILNEK--------NSK 209 (579)
T ss_dssp TT----------------------------THHHH------------------------HHHHHHHHHH--------CSS
T ss_pred CC----------------------------CHHHH------------------------HHHHHHhhhh--------hcc
Confidence 21 11111 1111111110 000
Q ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhh-hhcCCCCCCCcchhh
Q 043990 414 HLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDT-IKSGNPGTTGFEDCI 492 (911)
Q Consensus 414 ~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~-~~~~~~~~~~~~~~~ 492 (911)
..+..........+++....+... ....|..+... ...... ......
T Consensus 210 ~~~~~~~l~~SAT~~~~v~~~~~~-----------------------------~l~~~~~~~~~~~~~~~~--~~~~~i- 257 (579)
T 3sqw_A 210 SADNIKTLLFSATLDDKVQKLANN-----------------------------IMNKKECLFLDTVDKNEP--EAHERI- 257 (579)
T ss_dssp CTTCCEEEEEESSCCTHHHHHTTT-----------------------------TCCSSEEEEEESSCSSSC--SSCTTE-
T ss_pred cccCceEEEEeccCChHHHHHHHH-----------------------------HcCCCceEEEeecCcccc--cccccc-
Confidence 111222333334444322221111 11111111000 000000 000000
Q ss_pred hcCCcccccCCCCCCCCCCCcccc-cchHHHHHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHHHc---CCCEEEEe
Q 043990 493 RFFPPEMFSGRSGSWTGGDGAWVE-LSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRER---RYPYLRLD 567 (911)
Q Consensus 493 ~~~~~e~~~~~~~~~~~~~~~~~~-~S~Kl~~L~~LL~~l~~-~~~~KVIIFSq~~~~ld~L~~~L~~~---gi~~~~Ld 567 (911)
..... .... ...+...+..++..+.. ..+.++|||++....++.+...|... |+.+..++
T Consensus 258 ---~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~h 322 (579)
T 3sqw_A 258 ---DQSVV------------ISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFH 322 (579)
T ss_dssp ---EEEEE------------EESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEES
T ss_pred ---ceEEE------------EecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEec
Confidence 00000 0000 12233444444444443 35789999999999999999999987 99999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 568 GTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 568 Gsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
|.++..+|.+++++|+++.. .+|++|.++++|||++++++||+||++|++..+.|++||++|.|+...+.+|
T Consensus 323 g~~~~~~R~~~~~~F~~g~~---~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 394 (579)
T 3sqw_A 323 GKITQNKRTSLVKRFKKDES---GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 394 (579)
T ss_dssp TTSCHHHHHHHHHHHHHCSS---EEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCCHHHHHHHHHHhhcCCC---eEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEE
Confidence 99999999999999998543 4899999999999999999999999999999999999999999987655554
No 29
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.93 E-value=3.2e-25 Score=264.04 Aligned_cols=342 Identities=17% Similarity=0.239 Sum_probs=208.1
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|+|||.+++..++. ...+.+|+..+||+|||++++..+...+..+....+...++|||+|+ .|+.||.++
T Consensus 94 ~~~~~Q~~~i~~~l~--------~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~ 165 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE 165 (563)
T ss_dssp SCCHHHHHHHHHHHS--------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--------CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHH
Confidence 588999999988752 12457799999999999998877766655543222234579999998 788999999
Q ss_pred HHHHhCC-----CeEEEEec-CCcchhhhccCcccCCCCCCccEEEEehHHHHhhcccc--ccCCCCcEEEEcCccccCC
Q 043990 262 IKKWVGG-----RVQLIALC-ESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKF--SCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 262 i~k~~~~-----~~~v~~~~-~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~--~~~~~~~lVIlDEAH~lKN 333 (911)
+.+++.. ...+..+. +.........+. ...++|+|+|++.+....... .....+++||+||||++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 240 (563)
T 3i5x_A 166 VKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN-----KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE 240 (563)
T ss_dssp HHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHH-----HHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS
T ss_pred HHHHHhhccccCceeEEEEECCcCHHHHHHHHh-----cCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhc
Confidence 9997531 12333333 333322222111 124579999999985443321 1135689999999999844
Q ss_pred ccchhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhc
Q 043990 334 DQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSN 413 (911)
Q Consensus 334 ~~s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~ 413 (911)
.. |...+ ..+...+... ...
T Consensus 241 ~~----------------------------f~~~~------------------------~~i~~~l~~~--------~~~ 260 (563)
T 3i5x_A 241 IG----------------------------FRDDL------------------------ETISGILNEK--------NSK 260 (563)
T ss_dssp TT----------------------------THHHH------------------------HHHHHHHHHH--------CSS
T ss_pred cc----------------------------hHHHH------------------------HHHHHhhhhc--------ccc
Confidence 21 11111 1111111100 001
Q ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhh
Q 043990 414 HLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIR 493 (911)
Q Consensus 414 ~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~ 493 (911)
..+..........+++....+... ....|..+......... .......
T Consensus 261 ~~~~~~~l~~SAT~~~~v~~~~~~-----------------------------~~~~~~~~~~~~~~~~~-~~~~~~~-- 308 (563)
T 3i5x_A 261 SADNIKTLLFSATLDDKVQKLANN-----------------------------IMNKKECLFLDTVDKNE-PEAHERI-- 308 (563)
T ss_dssp CTTCCEEEEEESSCCTHHHHHTTT-----------------------------TCCSSEEEEEESSCSSS-CSSCTTE--
T ss_pred CccCceEEEEEccCCHHHHHHHHH-----------------------------hcCCCceEEEeccCCCC-ccccccC--
Confidence 112222333333443321111110 11111111000000000 0000000
Q ss_pred cCCcccccCCCCCCCCCCCcccccchHH-HHHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHHHc---CCCEEEEeC
Q 043990 494 FFPPEMFSGRSGSWTGGDGAWVELSGKM-HVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRER---RYPYLRLDG 568 (911)
Q Consensus 494 ~~~~e~~~~~~~~~~~~~~~~~~~S~Kl-~~L~~LL~~l~~-~~~~KVIIFSq~~~~ld~L~~~L~~~---gi~~~~LdG 568 (911)
..... .......++ ..+..++..+.. ..+.++|||++....++.+...|... |+++..++|
T Consensus 309 --~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~ 374 (563)
T 3i5x_A 309 --DQSVV------------ISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHG 374 (563)
T ss_dssp --EEEEE------------EESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEEST
T ss_pred --ceEEE------------ECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecC
Confidence 00000 000112232 233334444432 35789999999999999999999987 999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 569 TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 569 sts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
.++..+|..+++.|+++.. .+|++|.++++|||++++++||+||+++++..|.|++||++|.|+...+.+ |+...
T Consensus 375 ~~~~~~R~~~~~~f~~g~~---~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~ 449 (563)
T 3i5x_A 375 KITQNKRTSLVKRFKKDES---GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL--FICKD 449 (563)
T ss_dssp TSCHHHHHHHHHHHHHCSS---EEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE--EEEGG
T ss_pred CCCHHHHHHHHHHHhcCCC---CEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEE--EEchh
Confidence 9999999999999998544 489999999999999999999999999999999999999999997655544 44443
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.92 E-value=7.8e-24 Score=242.30 Aligned_cols=333 Identities=15% Similarity=0.154 Sum_probs=208.9
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..+++ .+.+|+..+||+|||+.++..+...... ..++|||+|+ .|+.||.++
T Consensus 21 ~~~~~Q~~~i~~i~~----------~~~~lv~apTGsGKT~~~l~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~ 83 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQ----------GKSFTMVAPTGVGKTTFGMMTALWLARK-------GKKSALVFPTVTLVKQTLER 83 (414)
T ss_dssp CCCHHHHHHHHHHTT----------TCCEECCSCSSSSHHHHHHHHHHHHHTT-------TCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc----------CCCEEEEeCCCCCHHHHHHHHHHHHhcC-------CCEEEEEECCHHHHHHHHHH
Confidence 467999999998752 2467999999999999766665555422 3579999998 788999999
Q ss_pred HHHHhCCCeEEEEecCCcchh----hhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccch
Q 043990 262 IKKWVGGRVQLIALCESTRDD----VVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~----~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
+.+|.+..+.+..++++.... ....+. .+.++|+|+|++.+......+. ...+++||+||||++......
T Consensus 84 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~-----~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 84 LQKLADEKVKIFGFYSSMKKEEKEKFEKSFE-----EDDYHILVFSTQFVSKNREKLS-QKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHCCSSCCEEECCTTSCHHHHHHHHHHHH-----HTCCSEEEEEHHHHHHCHHHHT-TCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHccCCceEEEEECCCChhhHHHHHHHhh-----cCCCCEEEECHHHHHHHHHHhc-cccccEEEEeChHhhhhccch
Confidence 999876445666666655431 111111 1236899999999965554432 468999999999987321100
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHH-HHHHhhHHhhhhcHHHHhccCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE-LSAKVNQFILRRTNALLSNHLP 416 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~e-L~~~l~~~ilRRtk~~v~~~LP 416 (911)
+..++.+..|. .. +..++..+-.. .....++
T Consensus 158 -----~d~~l~~~~~~---------------------------------------~~~~~~i~~~~~~~----~~~~~l~ 189 (414)
T 3oiy_A 158 -----IDTLLMMVGIP---------------------------------------EEIIRKAFSTIKQG----KIYERPK 189 (414)
T ss_dssp -----HHHHHHHTTCC---------------------------------------HHHHHHHHHHHHHT----CCCCCCT
T ss_pred -----hhhHHhhcCCc---------------------------------------HHHHHHHHHhcccc----hhhhhcc
Confidence 01111101110 01 11111111000 0011233
Q ss_pred C-cEEEEEEecCCHHHH----HHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchh
Q 043990 417 P-KIIEVVCCKLTPLQS----ELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDC 491 (911)
Q Consensus 417 ~-k~~~vv~~~ls~~Q~----~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~ 491 (911)
. ....++.+.-|+.-. .++..++ . + ............
T Consensus 190 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-----------------------------~----~--~~~~~~~~~~~i--- 231 (414)
T 3oiy_A 190 NLKPGILVVSSATAKPRGIRPLLFRDLL-----------------------------N----F--TVGRLVSVARNI--- 231 (414)
T ss_dssp TCCCCEEEESSCCSSCCSSTTHHHHHHH-----------------------------S----C--CSSCCCCCCCSE---
T ss_pred cCCCceEEEEecCCCcchhHHHHHHHhh-----------------------------c----c--CcCccccccccc---
Confidence 2 222344444441110 1111000 0 0 000000000000
Q ss_pred hhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEE-EEeCCC
Q 043990 492 IRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYL-RLDGTT 570 (911)
Q Consensus 492 ~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~-~LdGst 570 (911)
........|...|..++... +.++|||++....++.+...|...|+++. .++|.
T Consensus 232 --------------------~~~~~~~~~~~~l~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~- 286 (414)
T 3oiy_A 232 --------------------THVRISSRSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF- 286 (414)
T ss_dssp --------------------EEEEESSCCHHHHHHHHHHH----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH-
T ss_pred --------------------hheeeccCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc-
Confidence 00111234667777777762 48999999999999999999999999998 88884
Q ss_pred CHHHHHHHHHhhcCCCCCceEEEEe----cCCcccccCCCC-CCEEEEeCCC--CCcchHHHHHHhhhhcCCc--ccEEE
Q 043990 571 SISKRQKLVNHFNDPSKNEFVFLLS----SKAGGCGLNLIG-GNRLVLFDPD--WNPANDKQAAARVWRDGQK--KRVFI 641 (911)
Q Consensus 571 s~~~R~~iv~~Fn~~~~~~~v~LlS----tkagg~GLNL~~-An~VIl~Dp~--WNPa~~~QAigR~~RiGQk--k~V~V 641 (911)
+|. +++|+++... +|++ |+++++|||+++ +++||+||++ +++..|.|++||++|.|+. +...+
T Consensus 287 ---~r~--~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~ 358 (414)
T 3oiy_A 287 ---EKN--FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVS 358 (414)
T ss_dssp ---HHH--HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEE
T ss_pred ---chH--HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEE
Confidence 444 9999987655 6777 999999999999 9999999999 9999999999999999986 56667
Q ss_pred EEEEeCCCHHHHHHHHHHHH
Q 043990 642 YRFLSTGTIEEKVYQRQMSK 661 (911)
Q Consensus 642 yrLi~~gTIEEkI~~rq~~K 661 (911)
|.|+ -|...++...++
T Consensus 359 i~~~----~~~~~~~~l~~~ 374 (414)
T 3oiy_A 359 VIFE----EDEEIFESLKTR 374 (414)
T ss_dssp EEEC----CCHHHHHHHHHH
T ss_pred EEEE----ccHHHHHHHHHH
Confidence 7676 234444444433
No 31
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.92 E-value=7.7e-24 Score=249.82 Aligned_cols=311 Identities=18% Similarity=0.209 Sum_probs=201.8
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.+||||.+++..++. .+.+|+..+||+|||+.++..+. .. .+++|||+|. +|+.||.++
T Consensus 25 ~~r~~Q~~~i~~il~----------g~d~lv~apTGsGKTl~~~lp~l--~~--------~g~~lvi~P~~aL~~q~~~~ 84 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLS----------GRDCLVVMPTGGGKSLCYQIPAL--LL--------NGLTVVVSPLISLMKDQVDQ 84 (523)
T ss_dssp SCCTTHHHHHHHHHT----------TCCEEEECSCHHHHHHHHHHHHH--HS--------SSEEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----------CCCEEEECCCCcHHHHHHHHHHH--Hh--------CCCEEEECChHHHHHHHHHH
Confidence 567999999999863 24679999999999987654443 22 2478999998 888999999
Q ss_pred HHHHhCCCeEEEEecCCcchhh-hccCcccCCCCCCccEEEEehHHHHhhc-cccccCCCCcEEEEcCccccCCccchhc
Q 043990 262 IKKWVGGRVQLIALCESTRDDV-VSGIDSFTDPCSSLQVLIVSYETFRMHS-SKFSCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~-~~~~~~~~~~~~~~~VvI~Sye~l~~~~-~~~~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
+.++ + +.+..+++...... ........ .+.++|+++|++.+.... ........+++||+||||.+.....
T Consensus 85 l~~~-g--i~~~~l~~~~~~~~~~~~~~~~~--~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~--- 156 (523)
T 1oyw_A 85 LQAN-G--VAAACLNSTQTREQQLEVMTGCR--TGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGH--- 156 (523)
T ss_dssp HHHT-T--CCEEEECTTSCHHHHHHHHHHHH--HTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSS---
T ss_pred HHHc-C--CcEEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCC---
Confidence 9886 2 34444444332211 11000000 134689999999985321 1112236789999999999854321
Q ss_pred cCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcE
Q 043990 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKI 419 (911)
Q Consensus 340 ~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~ 419 (911)
.|+..|. .+.. +...+|...
T Consensus 157 -----------------------~fr~~~~----------------------------~l~~---------l~~~~~~~~ 176 (523)
T 1oyw_A 157 -----------------------DFRPEYA----------------------------ALGQ---------LRQRFPTLP 176 (523)
T ss_dssp -----------------------CCCHHHH----------------------------GGGG---------HHHHCTTSC
T ss_pred -----------------------ccHHHHH----------------------------HHHH---------HHHhCCCCC
Confidence 0111110 0000 001234333
Q ss_pred EEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHh-cChhhhHhhhhcCCCCCCCcchhhhcCCcc
Q 043990 420 IEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLC-NHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498 (911)
Q Consensus 420 ~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~Lrklc-nhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e 498 (911)
.......+++....-+.. .+. ..|..+.... .. +.
T Consensus 177 ~i~lSAT~~~~~~~~i~~----------------------------~l~~~~~~~~~~~~-----~r-----------~~ 212 (523)
T 1oyw_A 177 FMALTATADDTTRQDIVR----------------------------LLGLNDPLIQISSF-----DR-----------PN 212 (523)
T ss_dssp EEEEESCCCHHHHHHHHH----------------------------HHTCCSCEEEECCC-----CC-----------TT
T ss_pred EEEEeCCCCHHHHHHHHH----------------------------HhCCCCCeEEeCCC-----CC-----------Cc
Confidence 333333444321111100 000 1111110000 00 00
Q ss_pred cccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Q 043990 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578 (911)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~i 578 (911)
.. ........|+..|.+++.. ..+.++|||++....++.+...|...|+.+..++|+++.++|.++
T Consensus 213 l~-----------~~v~~~~~~~~~l~~~l~~---~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~ 278 (523)
T 1oyw_A 213 IR-----------YMLMEKFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADV 278 (523)
T ss_dssp EE-----------EEEEECSSHHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred eE-----------EEEEeCCCHHHHHHHHHHh---cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHH
Confidence 00 0011123456666666554 357899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 579 v~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+++|.++... +|++|.++|.|||++.++.||+|++|||+..|.|++||++|.|+...+.++
T Consensus 279 ~~~f~~g~~~---vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 279 QEKFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp HHHHHTTSCS---EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHHHcCCCe---EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 9999986554 899999999999999999999999999999999999999999998776664
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.92 E-value=1.3e-23 Score=250.81 Aligned_cols=318 Identities=14% Similarity=0.112 Sum_probs=203.2
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.+||+|.+++..++. .+.+|+..+||+|||+..+..+.. . .+.+|||+|. +|+.||.+.
T Consensus 44 ~~rp~Q~~~i~~il~----------g~d~lv~~pTGsGKTl~~~lpal~---~-------~g~~lVisP~~~L~~q~~~~ 103 (591)
T 2v1x_A 44 KFRPLQLETINVTMA----------GKEVFLVMPTGGGKSLCYQLPALC---S-------DGFTLVICPLISLMEDQLMV 103 (591)
T ss_dssp SCCTTHHHHHHHHHT----------TCCEEEECCTTSCTTHHHHHHHHT---S-------SSEEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----------CCCEEEEECCCChHHHHHHHHHHH---c-------CCcEEEEeCHHHHHHHHHHH
Confidence 577999999998863 246799999999999876554432 1 2489999998 888999999
Q ss_pred HHHHhCCCeEEEEecCCcchhhhc-cCcccCCCCCCccEEEEehHHHHh------hccccccCCCCcEEEEcCccccCCc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVS-GIDSFTDPCSSLQVLIVSYETFRM------HSSKFSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~-~~~~~~~~~~~~~VvI~Sye~l~~------~~~~~~~~~~~~lVIlDEAH~lKN~ 334 (911)
+.++ + +.+..+++........ ...........++|+++|++.+.. ..........+.+||+||||.+...
T Consensus 104 l~~~-g--i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~ 180 (591)
T 2v1x_A 104 LKQL-G--ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQW 180 (591)
T ss_dssp HHHH-T--CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTT
T ss_pred HHhc-C--CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccc
Confidence 9998 3 4455555544322111 111111122467899999998742 1111212457899999999998542
Q ss_pred cchhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhcc
Q 043990 335 QTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNH 414 (911)
Q Consensus 335 ~s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~ 414 (911)
.. .|+..|. .+..| ...
T Consensus 181 g~--------------------------dfr~~~~---------------------~l~~l----------------~~~ 197 (591)
T 2v1x_A 181 GH--------------------------DFRPDYK---------------------ALGIL----------------KRQ 197 (591)
T ss_dssp CT--------------------------TCCGGGG---------------------GGGHH----------------HHH
T ss_pred cc--------------------------ccHHHHH---------------------HHHHH----------------HHh
Confidence 21 0100000 00001 012
Q ss_pred CCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhc
Q 043990 415 LPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRF 494 (911)
Q Consensus 415 LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~ 494 (911)
+|..........+++........++. . ..+..+.. . .
T Consensus 198 ~~~~~ii~lSAT~~~~v~~~i~~~l~---------~------------------~~~~~~~~----~------------~ 234 (591)
T 2v1x_A 198 FPNASLIGLTATATNHVLTDAQKILC---------I------------------EKCFTFTA----S------------F 234 (591)
T ss_dssp CTTSEEEEEESSCCHHHHHHHHHHTT---------C------------------CSCEEEEC----C------------C
T ss_pred CCCCcEEEEecCCCHHHHHHHHHHhC---------C------------------CCcEEEec----C------------C
Confidence 34433333344444322211111100 0 00100000 0 0
Q ss_pred CCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHH
Q 043990 495 FPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSIS 573 (911)
Q Consensus 495 ~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~-~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~ 573 (911)
..+.... ......+.+...+..++..+.. ..+.++|||++....++.+...|...|+.+..++|+++..
T Consensus 235 ~r~nl~~----------~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~ 304 (591)
T 2v1x_A 235 NRPNLYY----------EVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPE 304 (591)
T ss_dssp CCTTEEE----------EEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHH
T ss_pred CCcccEE----------EEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHH
Confidence 0000000 0000112233344444444432 2578999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 574 KRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 574 ~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+|.+++++|..+... +|++|.++|+|||++.++.||+|++++++..|.|++||++|.|+...+.++
T Consensus 305 ~R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 305 DKTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp HHHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHHHHHHHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 999999999986555 899999999999999999999999999999999999999999998777665
No 33
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=260.62 Aligned_cols=317 Identities=15% Similarity=0.136 Sum_probs=95.5
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..++. ...+.+|++.+||+|||++++..+...+..+. ...++|||+|+ .|+.||.+.
T Consensus 114 ~p~~~Q~~ai~~il~--------~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~----~~~~~lil~Pt~~La~Q~~~~ 181 (479)
T 3fmp_B 114 RPSKIQENALPLMLA--------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----KYPQCLCLSPTYELALQTGKV 181 (479)
T ss_dssp SCCHHHHHHHHHHTS--------BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--------CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC----CCCcEEEEeChHHHHHHHHHH
Confidence 577999999998853 12356899999999999987666654433321 13379999998 677899888
Q ss_pred HHHHhCC--CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCCccch
Q 043990 262 IKKWVGG--RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 262 i~k~~~~--~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
+.++... .+.+....+....... .....+|+|+|++.+...... +.....+++||+||||++.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~- 252 (479)
T 3fmp_B 182 IEQMGKFYPELKLAYAVRGNKLERG--------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG- 252 (479)
T ss_dssp HHHHHTTSTTCCEEEESTTCCCCTT--------CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTT-
T ss_pred HHHHHhhCCCceEEEEeCCcccccc--------ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCC-
Confidence 8887642 2344333333221111 012457999999999655432 22235789999999998732110
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPP 417 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~ 417 (911)
|. ..+..++ ..+|.
T Consensus 253 --------------------------~~---------------------------~~~~~i~-------------~~~~~ 266 (479)
T 3fmp_B 253 --------------------------HQ---------------------------DQSIRIQ-------------RMLPR 266 (479)
T ss_dssp --------------------------HH---------------------------HHHHHHH-------------TTSCT
T ss_pred --------------------------cH---------------------------HHHHHHH-------------hhCCc
Confidence 00 0000000 01222
Q ss_pred c-EEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC
Q 043990 418 K-IIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP 496 (911)
Q Consensus 418 k-~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~ 496 (911)
. ........++.....+.. .....|..+....... .......
T Consensus 267 ~~~~i~~SAT~~~~~~~~~~-----------------------------~~~~~~~~i~~~~~~~--~~~~~~~------ 309 (479)
T 3fmp_B 267 NCQMLLFSATFEDSVWKFAQ-----------------------------KVVPDPNVIKLKREEE--TLDTIKQ------ 309 (479)
T ss_dssp TSEEEEEESCCCHHHHHHHH-----------------------------HHSSSEEEEEEC-------------------
T ss_pred cceEEEEeCCCCHHHHHHHH-----------------------------HHcCCCeEEecccccc--CcCCceE------
Confidence 1 122222233321111111 1111111110000000 0000000
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ 576 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~ 576 (911)
.+ ........|+..|..++... ...++||||+....++.+...|...|+.+..++|.++..+|.
T Consensus 310 -~~------------~~~~~~~~~~~~l~~~~~~~---~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~ 373 (479)
T 3fmp_B 310 -YY------------VLCSSRDEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRA 373 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -EE------------EEeCCHHHHHHHHHHHHhhc---cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHH
Confidence 00 00001134555555555543 357999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCc------chHHHHHHhhhhcCCcccEEEE
Q 043990 577 KLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNP------ANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 577 ~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNP------a~~~QAigR~~RiGQkk~V~Vy 642 (911)
.+++.|+++... +|++|.++++|||++++++||+||++|++ ..+.|++||++|.|+...++++
T Consensus 374 ~~~~~f~~g~~~---iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~ 442 (479)
T 3fmp_B 374 AVIERFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 442 (479)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHcCCCc---EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEE
Confidence 999999986544 89999999999999999999999999876 6899999999999976665543
No 34
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.9e-23 Score=263.06 Aligned_cols=126 Identities=10% Similarity=0.101 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCC---------------------------------------
Q 043990 522 HVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP--------------------------------------- 562 (911)
Q Consensus 522 ~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~--------------------------------------- 562 (911)
..+..++..+......++|||++....++.+...|...++.
T Consensus 427 ~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 506 (1108)
T 3l9o_A 427 GDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 506 (1108)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHT
T ss_pred hHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcC
Confidence 34445565555556679999999999999998887653332
Q ss_pred EEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcch--------HHHHHHhhhhcC
Q 043990 563 YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPAN--------DKQAAARVWRDG 634 (911)
Q Consensus 563 ~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~--------~~QAigR~~RiG 634 (911)
+..++|+++..+|..+++.|+++... +|++|.++++|||+++++.||.++.+|++.. |.|++||++|.|
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred eeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 68899999999999999999986655 8999999999999999999999888877664 999999999999
Q ss_pred CcccEEEEEEEeCCCH
Q 043990 635 QKKRVFIYRFLSTGTI 650 (911)
Q Consensus 635 Qkk~V~VyrLi~~gTI 650 (911)
+....++|.++..+..
T Consensus 584 ~d~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 584 LDDRGIVIMMIDEKME 599 (1108)
T ss_dssp SCSSEEEEEEECCCCC
T ss_pred CCCceEEEEEecCCcC
Confidence 9999999988887743
No 35
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.90 E-value=4e-24 Score=251.70 Aligned_cols=316 Identities=15% Similarity=0.122 Sum_probs=182.4
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..++. .+.+.+|+..+||+|||++++..+...+..+. ...++|||||. .|+.||.++
T Consensus 141 ~p~~~Q~~ai~~i~~--------~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~----~~~~vLvl~P~~~L~~Q~~~~ 208 (508)
T 3fho_A 141 XXXKIQEKALPLLLS--------NPPRNMIGQSQSGTGKTAAFALTMLSRVDASV----PKPQAICLAPSRELARQIMDV 208 (508)
T ss_dssp ECCCTTSSSHHHHHC--------SSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC----CSCCEEEECSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHc--------CCCCCEEEECCCCccHHHHHHHHHHHHHHhCC----CCceEEEEECcHHHHHHHHHH
Confidence 589999999998853 12367899999999999998777766554431 23479999998 588999999
Q ss_pred HHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCCccchhc
Q 043990 262 IKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
+.++... .+.+....+...... ....++|+|+|++.+..... .......+++||+||||++.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~--- 276 (508)
T 3fho_A 209 VTEMGKYTEVKTAFGIKDSVPKG---------AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQG--- 276 (508)
T ss_dssp HHHHSTTSSCCEEC-------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC-----
T ss_pred HHHhCCccCeeEEEEeCCccccc---------ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCC---
Confidence 9999764 222222222211110 11246899999999854332 111245799999999999743110
Q ss_pred cCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcE
Q 043990 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKI 419 (911)
Q Consensus 340 ~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~ 419 (911)
|. ..+..++. .+++..
T Consensus 277 ------------------------~~---------------------------~~~~~i~~-------------~~~~~~ 292 (508)
T 3fho_A 277 ------------------------LG---------------------------DQSMRIKH-------------LLPRNT 292 (508)
T ss_dssp ------------------------CH---------------------------HHHHHHHH-------------HSCTTC
T ss_pred ------------------------cH---------------------------HHHHHHHH-------------hCCcCC
Confidence 00 00111110 122221
Q ss_pred -EEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCcc
Q 043990 420 -IEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPE 498 (911)
Q Consensus 420 -~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e 498 (911)
.......+++....+... ....+..+.. .......... ...
T Consensus 293 ~~i~lSAT~~~~~~~~~~~-----------------------------~~~~~~~i~~--~~~~~~~~~~-------~~~ 334 (508)
T 3fho_A 293 QIVLFSATFSERVEKYAER-----------------------------FAPNANEIRL--KTEELSVEGI-------KQL 334 (508)
T ss_dssp EEEEEESCCSTHHHHHHHH-----------------------------HSTTCEEECC--CCCC----CC-------CCE
T ss_pred eEEEEeCCCCHHHHHHHHH-----------------------------hcCCCeEEEe--ccccCCcccc-------eEE
Confidence 222223333222222211 1111111100 0000000000 000
Q ss_pred cccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Q 043990 499 MFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKL 578 (911)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~i 578 (911)
. ........|...+..++... .+.++|||++....++.+...|...|+.+..++|+++..+|..+
T Consensus 335 ~------------~~~~~~~~k~~~l~~ll~~~---~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~i 399 (508)
T 3fho_A 335 Y------------MDCQSEEHKYNVLVELYGLL---TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAI 399 (508)
T ss_dssp E------------EEC--CHHHHHHHHHHHC------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGG
T ss_pred E------------EECCchHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 0 00012245666676666554 46899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCC------CCcchHHHHHHhhhhcCCcccEEEE
Q 043990 579 VNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD------WNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 579 v~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~------WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+++|+++... +|++|.++++|+|+++++.||+||++ +++..+.|++||++|.|+...|.++
T Consensus 400 l~~f~~g~~~---VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 400 MDSFRVGTSK---VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp THHHHSSSCC---CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred HHHHHCCCCe---EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 9999986554 89999999999999999999999999 7899999999999999977666655
No 36
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.3e-22 Score=251.26 Aligned_cols=344 Identities=12% Similarity=0.133 Sum_probs=207.9
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|+|||.+++..+.. ...+|++.+||+|||+++...+...+..+ .++||++|+ .|..||.++
T Consensus 86 ~L~~~Q~eai~~l~~----------g~~vLV~apTGSGKTlva~lai~~~l~~g-------~rvL~l~PtkaLa~Q~~~~ 148 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDR----------GESVLVSAHTSAGKTVVAEYAIAQSLKNK-------QRVIYTSPIKALSNQKYRE 148 (1010)
T ss_dssp CCCHHHHHHHHHHHH----------TCEEEEECCTTSCHHHHHHHHHHHHHHTT-------CEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----------CCCEEEECCCCCChHHHHHHHHHHHhccC-------CeEEEECChHHHHHHHHHH
Confidence 588999999999854 24689999999999999877776665543 589999998 788999999
Q ss_pred HHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCccchhcc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKNDQTLTNR 340 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~~s~~~~ 340 (911)
+.++++ . +..+.|..... ...+|+|+|++.++..... ......+++||+||||++.+.....
T Consensus 149 l~~~~~-~--vglltGd~~~~------------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~-- 211 (1010)
T 2xgj_A 149 LLAEFG-D--VGLMTGDITIN------------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGV-- 211 (1010)
T ss_dssp HHHHHS-C--EEEECSSCEEC------------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHH--
T ss_pred HHHHhC-C--EEEEeCCCccC------------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhH--
Confidence 999987 2 33344433211 2357999999998654321 1113468999999999997653211
Q ss_pred CCHHHHHHhhhhcCCC--------CCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhh-HHhhhhcHHHH
Q 043990 341 NDLEEFFAMVNFTNPG--------ILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVN-QFILRRTNALL 411 (911)
Q Consensus 341 N~l~El~sLl~fl~P~--------~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~-~~ilRRtk~~v 411 (911)
.++++.. .+.+. .+++...|..++. .... +..+ ..
T Consensus 212 -~~e~il~---~l~~~~~il~LSATi~n~~e~a~~l~---------------------------~~~~~~~~v-----i~ 255 (1010)
T 2xgj_A 212 -VWEETII---LLPDKVRYVFLSATIPNAMEFAEWIC---------------------------KIHSQPCHI-----VY 255 (1010)
T ss_dssp -HHHHHHH---HSCTTCEEEEEECCCTTHHHHHHHHH---------------------------HHHTSCEEE-----EE
T ss_pred -HHHHHHH---hcCCCCeEEEEcCCCCCHHHHHHHHH---------------------------hhcCCCeEE-----Ee
Confidence 0222222 22111 1122222222211 0000 0000 00
Q ss_pred hccCCCcEEEEEEecC--------CH---HHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHH-HhcChhhhHhhhh
Q 043990 412 SNHLPPKIIEVVCCKL--------TP---LQSELYNHFIHSKNVKRAISEETKQSKILAYITALKK-LCNHPKLIYDTIK 479 (911)
Q Consensus 412 ~~~LP~k~~~vv~~~l--------s~---~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~Lrk-lcnhP~Ll~~~~~ 479 (911)
...-|......++..- .. ....-|... +..+.. ....|.-
T Consensus 256 ~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~~~~------ 307 (1010)
T 2xgj_A 256 TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA----------------------MASISNQIGDDPNS------ 307 (1010)
T ss_dssp ECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH----------------------HHTCC---------------
T ss_pred cCCCcccceEEEEecCCcceeeeeccccccchHHHHHH----------------------HHHHhhhhcccccc------
Confidence 1112222222222110 00 000001100 000000 0000000
Q ss_pred cCCCCCCCcchhhhcCCcccccCCCCCCCCC-CCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH
Q 043990 480 SGNPGTTGFEDCIRFFPPEMFSGRSGSWTGG-DGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE 558 (911)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~ 558 (911)
. .+ .+.+... ...... ......+..++..+......++|||++.+..++.+...|..
T Consensus 308 -~-------------~~-------~g~~~~~~k~~~~~-~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~ 365 (1010)
T 2xgj_A 308 -T-------------DS-------RGKKGQTYKGGSAK-GDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSK 365 (1010)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTT
T ss_pred -c-------------cc-------cccccccccccccc-ccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHh
Confidence 0 00 0000000 000000 00022344455554444556999999999999999888876
Q ss_pred cCCC---------------------------------------EEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCc
Q 043990 559 RRYP---------------------------------------YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAG 599 (911)
Q Consensus 559 ~gi~---------------------------------------~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkag 599 (911)
.++. +..++|+++..+|..+++.|+++... +|++|.++
T Consensus 366 ~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~l 442 (1010)
T 2xgj_A 366 LDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETF 442 (1010)
T ss_dssp SCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGG
T ss_pred CCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHh
Confidence 5443 67899999999999999999986655 89999999
Q ss_pred ccccCCCCCCEEEE----eCC----CCCcchHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 043990 600 GCGLNLIGGNRLVL----FDP----DWNPANDKQAAARVWRDGQKKRVFIYRFLSTGT 649 (911)
Q Consensus 600 g~GLNL~~An~VIl----~Dp----~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gT 649 (911)
++|||+++++.||. ||. +|++..+.|++||++|.|+....++|.|+..+.
T Consensus 443 a~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 443 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp GGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred hccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 99999999999999 999 999999999999999999998999999888663
No 37
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.90 E-value=7.3e-23 Score=260.74 Aligned_cols=311 Identities=16% Similarity=0.224 Sum_probs=205.0
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch-hhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS-LVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s-Ll~qW~~ 260 (911)
-.++|||.+++..++.... ......+|++.+||+|||++++..+......+ +++|||||+. |+.||.+
T Consensus 602 ~~~t~~Q~~ai~~il~~~~----~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g-------~~vlvlvPt~~La~Q~~~ 670 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMC----QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-------KQVAVLVPTTLLAQQHYD 670 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHH----SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-------CEEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh----cCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CeEEEEechHHHHHHHHH
Confidence 3579999999999876321 11223679999999999999887666554433 4899999985 7789999
Q ss_pred HHHHHhCC-CeEEEEecCCcch----hhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCcc
Q 043990 261 EIKKWVGG-RVQLIALCESTRD----DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQ 335 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~r~----~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~ 335 (911)
++.++++. .+.+..+++.... .....+. .+..+|+|+|++.+.... ....+++||+||+|++...
T Consensus 671 ~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~-----~g~~dIvV~T~~ll~~~~----~~~~l~lvIiDEaH~~g~~- 740 (1151)
T 2eyq_A 671 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVA-----EGKIDILIGTHKLLQSDV----KFKDLGLLIVDEEHRFGVR- 740 (1151)
T ss_dssp HHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHH-----TTCCSEEEECTHHHHSCC----CCSSEEEEEEESGGGSCHH-
T ss_pred HHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHh-----cCCCCEEEECHHHHhCCc----cccccceEEEechHhcChH-
Confidence 99998864 4555555543221 1111111 135789999999886432 1357899999999996210
Q ss_pred chhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccC
Q 043990 336 TLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHL 415 (911)
Q Consensus 336 s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~L 415 (911)
.+ ..|..+ .
T Consensus 741 ----------~~---------------------------------------------~~l~~l---------~------- 749 (1151)
T 2eyq_A 741 ----------HK---------------------------------------------ERIKAM---------R------- 749 (1151)
T ss_dssp ----------HH---------------------------------------------HHHHHH---------H-------
T ss_pred ----------HH---------------------------------------------HHHHHh---------c-------
Confidence 00 001100 0
Q ss_pred CCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcC
Q 043990 416 PPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF 495 (911)
Q Consensus 416 P~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~ 495 (911)
+. ..++.+.-||..+.+...+ .. ..++..+. .
T Consensus 750 ~~--~~vl~lSATp~p~~l~~~~----------~~-----------------~~~~~~i~----~--------------- 781 (1151)
T 2eyq_A 750 AN--VDILTLTATPIPRTLNMAM----------SG-----------------MRDLSIIA----T--------------- 781 (1151)
T ss_dssp TT--SEEEEEESSCCCHHHHHHH----------TT-----------------TSEEEECC----C---------------
T ss_pred CC--CCEEEEcCCCChhhHHHHH----------hc-----------------CCCceEEe----c---------------
Confidence 01 1233334443222211100 00 00111000 0
Q ss_pred CcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc--CCCEEEEeCCCCHH
Q 043990 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER--RYPYLRLDGTTSIS 573 (911)
Q Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~--gi~~~~LdGsts~~ 573 (911)
++.. + . ..........+..+...++..+. .+.+++|||+....++.+...|... ++.+..++|.|+..
T Consensus 782 ~~~~---r----~-~i~~~~~~~~~~~i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~ 851 (1151)
T 2eyq_A 782 PPAR---R----L-AVKTFVREYDSMVVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 851 (1151)
T ss_dssp CCCB---C----B-CEEEEEEECCHHHHHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHH
T ss_pred CCCC---c----c-ccEEEEecCCHHHHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHH
Confidence 0000 0 0 00001111233445555666654 4789999999999999999999988 88999999999999
Q ss_pred HHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCC-CCCcchHHHHHHhhhhcCCcccEEEEEEEeC
Q 043990 574 KRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDP-DWNPANDKQAAARVWRDGQKKRVFIYRFLST 647 (911)
Q Consensus 574 ~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp-~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~ 647 (911)
+|.+++++|+++..+ +|++|.++++|||++.+++||++++ .|+++.+.|++||++|.|+...| |.++..
T Consensus 852 eR~~il~~F~~g~~~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~--~ll~~~ 921 (1151)
T 2eyq_A 852 ELERVMNDFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA--WLLTPH 921 (1151)
T ss_dssp HHHHHHHHHHTTSCC---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEE--EEEECC
T ss_pred HHHHHHHHHHcCCCc---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEE--EEEECC
Confidence 999999999986554 8999999999999999999999998 69999999999999999976555 444544
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.88 E-value=2.6e-21 Score=236.45 Aligned_cols=328 Identities=16% Similarity=0.131 Sum_probs=201.8
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch-hhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS-LVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s-Ll~qW~~E 261 (911)
.|+|||.+++..+.+ ...+|++.+||+|||+++...+...+..+ .++|+|+|.. |+.||.++
T Consensus 25 ~l~~~Q~~~i~~i~~----------~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~l~i~P~r~La~q~~~~ 87 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS----------GKNLLLAMPTAAGKTLLAEMAMVREAIKG-------GKSLYVVPLRALAGEKYES 87 (702)
T ss_dssp CCCCCCHHHHHHHTT----------CSCEEEECSSHHHHHHHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CcEEEEeCcHHHHHHHHHH
Confidence 578999999998632 35789999999999999977666555432 4799999985 88999999
Q ss_pred HHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccc-cCCCCcEEEEcCccccCCccchhcc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFS-CSESCDLLICDEAHRLKNDQTLTNR 340 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~-~~~~~~lVIlDEAH~lKN~~s~~~~ 340 (911)
+.++....+.+....|...... ......+|+|+|++.+......-. ....+++||+||+|.+.+.....
T Consensus 88 ~~~~~~~g~~v~~~~G~~~~~~--------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~-- 157 (702)
T 2p6r_A 88 FKKWEKIGLRIGISTGDYESRD--------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGA-- 157 (702)
T ss_dssp HTTTTTTTCCEEEECSSCBCCS--------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHH--
T ss_pred HHHHHhcCCEEEEEeCCCCcch--------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCccc--
Confidence 9766554456665555433211 112357899999998854332211 12468999999999986532100
Q ss_pred CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcEE
Q 043990 341 NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKII 420 (911)
Q Consensus 341 N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~ 420 (911)
.+..+.+.+..+ -|..
T Consensus 158 -~~~~ll~~l~~~-------------------------------------------------------------~~~~-- 173 (702)
T 2p6r_A 158 -TLEILVTKMRRM-------------------------------------------------------------NKAL-- 173 (702)
T ss_dssp -HHHHHHHHHHHH-------------------------------------------------------------CTTC--
T ss_pred -HHHHHHHHHHhc-------------------------------------------------------------CcCc--
Confidence 011111111000 0111
Q ss_pred EEEEecCCHHH-HHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCccc
Q 043990 421 EVVCCKLTPLQ-SELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEM 499 (911)
Q Consensus 421 ~vv~~~ls~~Q-~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (911)
.++.+.-|... ..+.+ + + ..+. +... ..+ ....... ...+..
T Consensus 174 ~ii~lSATl~n~~~~~~-~---------l--------------------~~~~-~~~~---~r~--~~l~~~~-~~~~~~ 216 (702)
T 2p6r_A 174 RVIGLSATAPNVTEIAE-W---------L--------------------DADY-YVSD---WRP--VPLVEGV-LCEGTL 216 (702)
T ss_dssp EEEEEECCCTTHHHHHH-H---------T--------------------TCEE-EECC---CCS--SCEEEEE-ECSSEE
T ss_pred eEEEECCCcCCHHHHHH-H---------h--------------------CCCc-ccCC---CCC--ccceEEE-eeCCee
Confidence 22222222110 11100 0 0 0000 0000 000 0000000 000000
Q ss_pred ccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc--------------------
Q 043990 500 FSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-------------------- 559 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~-------------------- 559 (911)
. +..........-.+...+.+++ . .+.++|||++.....+.+...|...
T Consensus 217 ~------~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~ 285 (702)
T 2p6r_A 217 E------LFDGAFSTSRRVKFEELVEECV----A-ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEG 285 (702)
T ss_dssp E------EEETTEEEEEECCHHHHHHHHH----H-TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCS
T ss_pred e------ccCcchhhhhhhhHHHHHHHHH----h-cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccc
Confidence 0 0000000000001333333333 2 4789999999999998888877643
Q ss_pred ----------CCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEE----eC---CCCCcch
Q 043990 560 ----------RYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL----FD---PDWNPAN 622 (911)
Q Consensus 560 ----------gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl----~D---p~WNPa~ 622 (911)
++.+..++|+++.++|..+.+.|.++... +|++|.+++.|+|+++.+.||. || .+++++.
T Consensus 286 ~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~ 362 (702)
T 2p6r_A 286 EMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSE 362 (702)
T ss_dssp HHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHH
T ss_pred cccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHH
Confidence 23567799999999999999999986544 8999999999999999999998 77 7899999
Q ss_pred HHHHHHhhhhcCCcccEEEEEEEeCCCHHH
Q 043990 623 DKQAAARVWRDGQKKRVFIYRFLSTGTIEE 652 (911)
Q Consensus 623 ~~QAigR~~RiGQkk~V~VyrLi~~gTIEE 652 (911)
+.|++||++|.|+.++..+|.++.....+.
T Consensus 363 ~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 363 YKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp HHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred HHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 999999999999999999999998877543
No 39
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.87 E-value=1.1e-20 Score=231.63 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=101.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHc---------------------------------CCCEEEEeCCCCHHHHHHHHHh
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRER---------------------------------RYPYLRLDGTTSISKRQKLVNH 581 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~---------------------------------gi~~~~LdGsts~~~R~~iv~~ 581 (911)
.+.++|||++.+...+.+...|... ...+..++|+++..+|..+.+.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 4789999999999998888887653 1358899999999999999999
Q ss_pred hcCCCCCceEEEEecCCcccccCCCCCCEEEE----eC----CCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHH
Q 043990 582 FNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL----FD----PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEE 652 (911)
Q Consensus 582 Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl----~D----p~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEE 652 (911)
|+++... +|++|.+++.|+|+++.+.||. || .+++++.+.|++||++|.|+.+...+|.+++....+.
T Consensus 316 f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 316 FRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 9986554 8999999999999999999998 87 6899999999999999999999999999998888554
No 40
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.86 E-value=9.4e-22 Score=240.13 Aligned_cols=311 Identities=16% Similarity=0.192 Sum_probs=198.1
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.|+|+|.+++..+..... ......+|+..+||+|||++++..+...+..+ .++||++|+ .|..||.++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~----~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-------~qvlvlaPtr~La~Q~~~~ 436 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMI----SEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-------FQTAFMVPTSILAIQHYRR 436 (780)
T ss_dssp CCCHHHHHHHHHHHHHHH----SSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-------SCEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcc----ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-------CeEEEEeCcHHHHHHHHHH
Confidence 689999999999876321 12224679999999999999988887776654 479999999 677999999
Q ss_pred HHHHhCC-CeEEEEecCCcchhhhc-cCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccchhc
Q 043990 262 IKKWVGG-RVQLIALCESTRDDVVS-GIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTN 339 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~~~~-~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~~~ 339 (911)
+.+|++. .+.+..++++....... .+.... .+.++|+|+|++.+.... ...++++||+||+|++.....
T Consensus 437 l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~--~g~~~IvVgT~~ll~~~~----~~~~l~lVVIDEaHr~g~~qr--- 507 (780)
T 1gm5_A 437 TVESFSKFNIHVALLIGATTPSEKEKIKSGLR--NGQIDVVIGTHALIQEDV----HFKNLGLVIIDEQHRFGVKQR--- 507 (780)
T ss_dssp HHHHHTCSSCCEEECCSSSCHHHHHHHHHHHH--SSCCCEEEECTTHHHHCC----CCSCCCEEEEESCCCC--------
T ss_pred HHHHhhhcCceEEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECHHHHhhhh----hccCCceEEecccchhhHHHH---
Confidence 9999864 46677776665432211 111111 135789999999885432 145789999999999721100
Q ss_pred cCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCCCcE
Q 043990 340 RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKI 419 (911)
Q Consensus 340 ~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~ 419 (911)
-.++. ..+.
T Consensus 508 --------------------------------------------------------------~~l~~-------~~~~-- 516 (780)
T 1gm5_A 508 --------------------------------------------------------------EALMN-------KGKM-- 516 (780)
T ss_dssp --------------------------------------------------------------CCCCS-------SSSC--
T ss_pred --------------------------------------------------------------HHHHH-------hCCC--
Confidence 00000 0011
Q ss_pred EEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCCccc
Q 043990 420 IEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEM 499 (911)
Q Consensus 420 ~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (911)
..++.+.-|+..+.+...+ ...... ..+ ...++.
T Consensus 517 ~~vL~mSATp~p~tl~~~~-----------------------------~g~~~~--s~i--------------~~~p~~- 550 (780)
T 1gm5_A 517 VDTLVMSATPIPRSMALAF-----------------------------YGDLDV--TVI--------------DEMPPG- 550 (780)
T ss_dssp CCEEEEESSCCCHHHHHHH-----------------------------TCCSSC--EEE--------------CCCCSS-
T ss_pred CCEEEEeCCCCHHHHHHHH-----------------------------hCCcce--eee--------------eccCCC-
Confidence 1233333343222111100 000000 000 000000
Q ss_pred ccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcch--------HHHHHHHHHHHH---cCCCEEEEeC
Q 043990 500 FSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYT--------QTLDLFAQLCRE---RRYPYLRLDG 568 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~--------~~ld~L~~~L~~---~gi~~~~LdG 568 (911)
+.. ...... ...+...+...+..... .+.+++|||+.. ..+..+...|.. .++.+..+||
T Consensus 551 ---r~~----i~~~~~-~~~~~~~l~~~i~~~l~-~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG 621 (780)
T 1gm5_A 551 ---RKE----VQTMLV-PMDRVNEVYEFVRQEVM-RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHG 621 (780)
T ss_dssp ---CCC----CEECCC-CSSTHHHHHHHHHHHTT-TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCS
T ss_pred ---Ccc----eEEEEe-ccchHHHHHHHHHHHHh-cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeC
Confidence 000 000001 12233344444444333 578999999865 346667777776 4788999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCC-CCcchHHHHHHhhhhcCCcccEEEE
Q 043990 569 TTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPD-WNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 569 sts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~-WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
.|+.++|.+++++|+++..+ +|++|.++++|+|++.+++||++|++ |+.+.+.|++||++|.|+...|+++
T Consensus 622 ~m~~~eR~~v~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 622 RLSQEEKDRVMLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp SSCCSCSHHHHHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred CCCHHHHHHHHHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 99999999999999987655 89999999999999999999999998 4789999999999999987766654
No 41
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.86 E-value=2.5e-20 Score=228.22 Aligned_cols=327 Identities=16% Similarity=0.124 Sum_probs=197.6
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch-hhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS-LVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s-Ll~qW~~E 261 (911)
.|+|||.+++..++. ....+|++.+||+|||+++...+...+... ..++|+++|.. |+.||.++
T Consensus 30 ~l~~~Q~~~i~~~~~---------~~~~~lv~apTGsGKT~~~~l~il~~~~~~------~~~il~i~P~r~La~q~~~~ 94 (715)
T 2va8_A 30 KLNPPQTEAVKKGLL---------EGNRLLLTSPTGSGKTLIAEMGIISFLLKN------GGKAIYVTPLRALTNEKYLT 94 (715)
T ss_dssp BCCHHHHHHHHTTTT---------TTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CSEEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---------CCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------CCeEEEEeCcHHHHHHHHHH
Confidence 578999999986321 235789999999999999976665544321 24899999995 88999999
Q ss_pred HHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccc-cCCCCcEEEEcCccccCCccchhcc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFS-CSESCDLLICDEAHRLKNDQTLTNR 340 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~-~~~~~~lVIlDEAH~lKN~~s~~~~ 340 (911)
+.++....+.+....|....... .....+|+|+|++.+......-. ....+++||+||+|.+.+.....
T Consensus 95 ~~~~~~~g~~v~~~~G~~~~~~~--------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~-- 164 (715)
T 2va8_A 95 FKDWELIGFKVAMTSGDYDTDDA--------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGP-- 164 (715)
T ss_dssp HGGGGGGTCCEEECCSCSSSCCG--------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHH--
T ss_pred HHHhhcCCCEEEEEeCCCCCchh--------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccch--
Confidence 96654434555555554322110 01246899999998854332111 12468999999999986422110
Q ss_pred CCHHHHHHhhh---h-cCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhccCC
Q 043990 341 NDLEEFFAMVN---F-TNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLP 416 (911)
Q Consensus 341 N~l~El~sLl~---f-l~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~~LP 416 (911)
.+..+...+. + +.-..+++...|.+++..+.. ....-|
T Consensus 165 -~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~~~~~-------------------------------------~~~~r~ 206 (715)
T 2va8_A 165 -VVESVTIRAKRRNLLALSATISNYKQIAKWLGAEPV-------------------------------------ATNWRP 206 (715)
T ss_dssp -HHHHHHHHHHTSEEEEEESCCTTHHHHHHHHTCEEE-------------------------------------ECCCCS
T ss_pred -HHHHHHHhcccCcEEEEcCCCCCHHHHHHHhCCCcc-------------------------------------CCCCCC
Confidence 0111111111 0 000111222223222221100 000112
Q ss_pred CcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcCC
Q 043990 417 PKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP 496 (911)
Q Consensus 417 ~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~~ 496 (911)
......+...-... .+.-+. +.
T Consensus 207 ~~l~~~~~~~~~~~---------------------------------------~~~~~~-------------------~~ 228 (715)
T 2va8_A 207 VPLIEGVIYPERKK---------------------------------------KEYNVI-------------------FK 228 (715)
T ss_dssp SCEEEEEEEECSST---------------------------------------TEEEEE-------------------ET
T ss_pred CCceEEEEecCCcc---------------------------------------cceeee-------------------cC
Confidence 22222111110000 000000 00
Q ss_pred cccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcC----------------
Q 043990 497 PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERR---------------- 560 (911)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~g---------------- 560 (911)
... .........+...+.+++ . .+.++|||++.....+.+...|....
T Consensus 229 ~~~-----------~~~~~~~~~~~~~~~~~~----~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 292 (715)
T 2va8_A 229 DNT-----------TKKVHGDDAIIAYTLDSL----S-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQ 292 (715)
T ss_dssp TSC-----------EEEEESSSHHHHHHHHHH----T-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHH
T ss_pred cch-----------hhhcccchHHHHHHHHHH----h-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Confidence 000 000000122333333333 2 47899999999999999988887642
Q ss_pred --------------------CCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEE----eC-
Q 043990 561 --------------------YPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL----FD- 615 (911)
Q Consensus 561 --------------------i~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl----~D- 615 (911)
..+..++|+++..+|..+.+.|.++... +|++|.+++.|||+++.+.||. ||
T Consensus 293 ~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~ 369 (715)
T 2va8_A 293 LDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNK 369 (715)
T ss_dssp HHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC-----
T ss_pred HHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccc
Confidence 3588899999999999999999986544 8999999999999999999998 99
Q ss_pred ------CCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 043990 616 ------PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGT 649 (911)
Q Consensus 616 ------p~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gT 649 (911)
.+++++.+.|++||++|.|+.++..+|+++....
T Consensus 370 ~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 370 KIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp ---------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred cCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 7999999999999999999999999999987765
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.85 E-value=3.3e-20 Score=233.12 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCC-------------------------------------
Q 043990 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRY------------------------------------- 561 (911)
Q Consensus 519 ~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi------------------------------------- 561 (911)
.++..|..++. .....++|||+......+.+...|...|+
T Consensus 322 ~~~~~li~~l~---~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 398 (997)
T 4a4z_A 322 KTWPEIVNYLR---KRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL 398 (997)
T ss_dssp THHHHHHHHHH---HTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHH---hCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHh
Confidence 34444444444 34567999999999999999988876655
Q ss_pred --CEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCC---------CcchHHHHHHhh
Q 043990 562 --PYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDW---------NPANDKQAAARV 630 (911)
Q Consensus 562 --~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~W---------NPa~~~QAigR~ 630 (911)
.+..++|+++..+|..+++.|+.+..+ +|++|.++++|||+++ .+||+++.++ ++..|.|++||+
T Consensus 399 ~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRA 474 (997)
T 4a4z_A 399 ERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRA 474 (997)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGG
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccc
Confidence 578999999999999999999987655 8999999999999999 7777766555 999999999999
Q ss_pred hhcCCcccEEEEEEEeCCCHHHHHHHHH
Q 043990 631 WRDGQKKRVFIYRFLSTGTIEEKVYQRQ 658 (911)
Q Consensus 631 ~RiGQkk~V~VyrLi~~gTIEEkI~~rq 658 (911)
+|.|+.....+|.+...+..++..+...
T Consensus 475 GR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 475 GRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp CCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred ccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 9999999999998887666666665443
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.79 E-value=1.6e-18 Score=219.60 Aligned_cols=298 Identities=15% Similarity=0.157 Sum_probs=180.3
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|+|.+++..++. .+.+|+..+||+|||+.++..+...+.. ..++|||+|+ .|+.|+.+.
T Consensus 78 ~pt~iQ~~ai~~il~----------g~dvlv~ApTGSGKTl~~l~~il~~~~~-------~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQ----------GKSFTMVAPTGVGKTTFGMMTALWLARK-------GKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp CCCHHHHHHHHHHTT----------TCCEEECCSTTCCHHHHHHHHHHHHHTT-------TCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----------CCCEEEEeCCCCcHHHHHHHHHHHHHhc-------CCeEEEEechHHHHHHHHHH
Confidence 466999999998743 2467999999999999777666665533 2479999998 677999999
Q ss_pred HHHHhCCCeEEEEecCCcch----hhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCccch
Q 043990 262 IKKWVGGRVQLIALCESTRD----DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTL 337 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~----~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~~s~ 337 (911)
+.++....+.+..++++... .....+. .+.++|+|+|++.+..+...+. ...+++||+||||++......
T Consensus 141 l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~-----~g~~~IlV~Tp~rL~~~l~~l~-~~~l~~lViDEaH~l~~~~r~ 214 (1104)
T 4ddu_A 141 LQKLADEKVKIFGFYSSMKKEEKEKFEKSFE-----EDDYHILVFSTQFVSKNREKLS-QKRFDFVFVDDVDAVLKASRN 214 (1104)
T ss_dssp HHTTSCTTSCEEEECTTCCTTHHHHHHHHHH-----TSCCSEEEEEHHHHHHSHHHHH-TSCCSEEEESCHHHHTTSSHH
T ss_pred HHHhhCCCCeEEEEeCCCCHHHHHHHHHHHh-----CCCCCEEEECHHHHHHHHHhhc-ccCcCEEEEeCCCcccccccc
Confidence 99976445667666665432 1112221 1346899999999965544332 457999999999987432100
Q ss_pred hccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHH-HHHHhhHHhhhhcHHHHhccCC
Q 043990 338 TNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSE-LSAKVNQFILRRTNALLSNHLP 416 (911)
Q Consensus 338 ~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~e-L~~~l~~~ilRRtk~~v~~~LP 416 (911)
+..+..++.|. .. +..++..+-.+ ..+ ..++
T Consensus 215 -----~Dr~L~~~gf~---------------------------------------~~~i~~il~~l~~~---~~~-~~~~ 246 (1104)
T 4ddu_A 215 -----IDTLLMMVGIP---------------------------------------EEIIRKAFSTIKQG---KIY-ERPK 246 (1104)
T ss_dssp -----HHHHHHTSSCC---------------------------------------HHHHHHHHHHHHHT---SCC-CCCS
T ss_pred -----chhhhHhcCCC---------------------------------------HHHHHHHHHhcccc---hhh-hhhc
Confidence 11111111110 01 11111110000 011 1222
Q ss_pred C-cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhhhcC
Q 043990 417 P-KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFF 495 (911)
Q Consensus 417 ~-k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~~~~ 495 (911)
. ....++.+.-|+.-..+...+ ++.... + .+..........
T Consensus 247 ~~~~~q~ll~SAT~~p~~~~~~~-------------------------~~~~l~----i--~v~~~~~~~~~i------- 288 (1104)
T 4ddu_A 247 NLKPGILVVSSATAKPRGIRPLL-------------------------FRDLLN----F--TVGRLVSVARNI------- 288 (1104)
T ss_dssp SCCCCEEEEECBSSCCCSSTTHH-------------------------HHHHTC----C--CCCBCCCCCCCE-------
T ss_pred cCCCceEEEEcCCCCcHHHHHHH-------------------------hhccee----E--EeccCCCCcCCc-------
Confidence 1 122333333331000000000 000000 0 000000000000
Q ss_pred CcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEE-EEeCCCCHHH
Q 043990 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYL-RLDGTTSISK 574 (911)
Q Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~-~LdGsts~~~ 574 (911)
........|...|..+|... +.++|||++....++.+...|...|+++. .++| +
T Consensus 289 ----------------~~~~~~~~k~~~L~~ll~~~----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~ 343 (1104)
T 4ddu_A 289 ----------------THVRISSRSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----F 343 (1104)
T ss_dssp ----------------EEEEESCCCHHHHHHHHHHH----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----H
T ss_pred ----------------eeEEEecCHHHHHHHHHHhc----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----c
Confidence 00011124667777777762 48999999999999999999999999998 8998 3
Q ss_pred HHHHHHhhcCCCCCceEEEEe----cCCcccccCCCC-CCEEEEeCCCC
Q 043990 575 RQKLVNHFNDPSKNEFVFLLS----SKAGGCGLNLIG-GNRLVLFDPDW 618 (911)
Q Consensus 575 R~~iv~~Fn~~~~~~~v~LlS----tkagg~GLNL~~-An~VIl~Dp~W 618 (911)
|.+ +++|+++..+ +|++ |.++++|||+++ ++.||+||+|-
T Consensus 344 rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 344 EKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 556 9999987655 7777 999999999999 99999999997
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.79 E-value=1.8e-18 Score=216.50 Aligned_cols=137 Identities=16% Similarity=0.192 Sum_probs=91.2
Q ss_pred ccChHHHHHHHHHHHHhhhcccc----ccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLN----AAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVS 256 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~----~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~ 256 (911)
..|||||.+||.++++++..... ....++||+.+.||+|||++++.++. ++... +...++|||||. .|..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~-ll~~~----~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAAR-LATEL----DFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHH-HHTTC----TTCCEEEEEECGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHH-HHHhc----CCCceEEEEeCcHHHHH
Confidence 46999999999999885431000 01235789999999999999977664 44321 124589999995 8889
Q ss_pred HHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc---cccCCCCcEEEEcCccccC
Q 043990 257 NWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK---FSCSESCDLLICDEAHRLK 332 (911)
Q Consensus 257 qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~---~~~~~~~~lVIlDEAH~lK 332 (911)
||.+++.+|.+..+ ..+.........+. ....+|+|+|+++|...... +.....+.+||+|||||+.
T Consensus 345 Q~~~~f~~f~~~~v----~~~~s~~~l~~~L~-----~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 345 QTMKEYQRFSPDSV----NGSENTAGLKRNLD-----KDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ 414 (1038)
T ss_dssp HHHHHHHTTSTTCS----SSSCCCHHHHHHHH-----CSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH
T ss_pred HHHHHHHHhccccc----ccccCHHHHHHHhc-----CCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc
Confidence 99999999876421 12222222222221 12467999999999754321 1112368899999999973
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.79 E-value=2e-18 Score=218.74 Aligned_cols=321 Identities=12% Similarity=0.113 Sum_probs=197.7
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEI 262 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei 262 (911)
+ |+|.+++..++. .+.+|+..+||+|||+.++.++..+... ..++|||+|+ .|+.|+.+.+
T Consensus 58 p-~iQ~~ai~~il~----------g~dvlv~apTGSGKTl~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 58 R-AIQKMWAKRILR----------KESFAATAPTGVGKTSFGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp C-HHHHHHHHHHHT----------TCCEECCCCBTSCSHHHHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHh----------CCCEEEEcCCCCCHHHHHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHHHH
Confidence 6 999999998753 2577999999999998555555555433 2479999998 6779999999
Q ss_pred HHHhCC-Ce----EEEEecCCcchhh----hccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCC
Q 043990 263 KKWVGG-RV----QLIALCESTRDDV----VSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 263 ~k~~~~-~~----~v~~~~~~~r~~~----~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN 333 (911)
.+++.. .+ .+..++|+..... ...+. .++|+|+|++.+......+ ..+++||+||||++-+
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~-------~~~IlV~TP~~L~~~l~~L---~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR-------NFKIVITTTQFLSKHYREL---GHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG-------GCSEEEEEHHHHHHCSTTS---CCCSEEEESCHHHHHT
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhcc-------CCCEEEEcHHHHHHHHHHh---ccCCEEEEeChhhhhh
Confidence 999864 34 5666665543322 12221 1689999999997765553 3789999999999865
Q ss_pred ccchhccCCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhhhhHHHHHHHHhhHHhhhhcHHHHhc
Q 043990 334 DQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSN 413 (911)
Q Consensus 334 ~~s~~~~N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ilRRtk~~v~~ 413 (911)
.. ..+..++..+.|...-.. .
T Consensus 190 ~~-----~~~~~i~~~lgf~~~~~~------------------------------------------------------~ 210 (1054)
T 1gku_B 190 AS-----KNVDKLLHLLGFHYDLKT------------------------------------------------------K 210 (1054)
T ss_dssp ST-----HHHHHHHHHTTEEEETTT------------------------------------------------------T
T ss_pred cc-----ccHHHHHHHhCcchhhhh------------------------------------------------------h
Confidence 21 224444444443211000 0
Q ss_pred cCCC-cEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCCCcchhh
Q 043990 414 HLPP-KIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCI 492 (911)
Q Consensus 414 ~LP~-k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~~~~~~~ 492 (911)
.+|. .....+...+++. ..+...++.. ... + .+...........
T Consensus 211 ~~~~~~q~~l~SAT~t~~-~~~~~~~~~~-------------------------~~~----i--~v~~~~~~~~~i~--- 255 (1054)
T 1gku_B 211 SWVGEARGCLMVSTATAK-KGKKAELFRQ-------------------------LLN----F--DIGSSRITVRNVE--- 255 (1054)
T ss_dssp EEEECCSSEEEECCCCSC-CCTTHHHHHH-------------------------HHC----C--CCSCCEECCCCEE---
T ss_pred hcccCCceEEEEecCCCc-hhHHHHHhhc-------------------------ceE----E--EccCcccCcCCce---
Confidence 0010 1112233333332 1111111000 000 0 0000000000000
Q ss_pred hcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCH
Q 043990 493 RFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSI 572 (911)
Q Consensus 493 ~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~ 572 (911)
...-...|...|..++.. .+.++|||++....++.+...|... +++..++|.+.
T Consensus 256 --------------------~~~~~~~k~~~L~~ll~~----~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~- 309 (1054)
T 1gku_B 256 --------------------DVAVNDESISTLSSILEK----LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK- 309 (1054)
T ss_dssp --------------------EEEESCCCTTTTHHHHTT----SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-
T ss_pred --------------------EEEechhHHHHHHHHHhh----cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-
Confidence 000013344445555543 3578999999999999999999988 99999999973
Q ss_pred HHHHHHHHhhcCCCCCceEEEEe----cCCcccccCCCCC-CEEEEeCCC------------------------------
Q 043990 573 SKRQKLVNHFNDPSKNEFVFLLS----SKAGGCGLNLIGG-NRLVLFDPD------------------------------ 617 (911)
Q Consensus 573 ~~R~~iv~~Fn~~~~~~~v~LlS----tkagg~GLNL~~A-n~VIl~Dp~------------------------------ 617 (911)
+++++|+++..+ +|++ |.++++|||++++ ++||+||++
T Consensus 310 ----~~l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1054)
T 1gku_B 310 ----GDYEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEI 382 (1054)
T ss_dssp ----HHHHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHH
T ss_pred ----HHHHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHH
Confidence 788999986655 6677 8999999999995 999999999
Q ss_pred -----------------------------------------CCcchHHHHHHhhhhcCCcc--cEEEEEEEeCCCHHHHH
Q 043990 618 -----------------------------------------WNPANDKQAAARVWRDGQKK--RVFIYRFLSTGTIEEKV 654 (911)
Q Consensus 618 -----------------------------------------WNPa~~~QAigR~~RiGQkk--~V~VyrLi~~gTIEEkI 654 (911)
.++..|.||+||++|.|... .+.+| +..+ |+++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~--~~~~--d~~~ 458 (1054)
T 1gku_B 383 ERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASF--LLED--DSEL 458 (1054)
T ss_dssp HTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEE--EECS--CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEE--EEec--CHHH
Confidence 78999999999999988774 34444 3333 4555
Q ss_pred HHHHHHHHH
Q 043990 655 YQRQMSKEG 663 (911)
Q Consensus 655 ~~rq~~K~~ 663 (911)
+....++..
T Consensus 459 ~~~l~~~l~ 467 (1054)
T 1gku_B 459 LSAFIERAK 467 (1054)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555554443
No 46
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.75 E-value=6e-18 Score=170.13 Aligned_cols=120 Identities=21% Similarity=0.221 Sum_probs=110.0
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
.+.|+..|.+++... .+.++|||+++..+++.+...|...|+++..++|.++..+|..++++|+++... +|++|
T Consensus 15 ~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT 88 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVAT 88 (172)
T ss_dssp GGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEES
T ss_pred hHHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEEC
Confidence 478999999998864 468999999999999999999999999999999999999999999999986555 88999
Q ss_pred CCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 597 KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 597 kagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
+++++|+|++.+++||+||+|||+..+.|++||++|.|++..+.++
T Consensus 89 ~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 89 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred CchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999999999999999999999999999999987665543
No 47
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.75 E-value=5.9e-18 Score=168.51 Aligned_cols=133 Identities=14% Similarity=0.261 Sum_probs=115.5
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
..+.|+..|.+++... .+.|+|||+++...++.+...|...|+++..++|+++..+|..++++|+++... +|++
T Consensus 18 ~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~ 91 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVA 91 (163)
T ss_dssp CGGGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEE
T ss_pred ChHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEE
Confidence 3478999999998864 467999999999999999999999999999999999999999999999986544 8899
Q ss_pred cCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHH
Q 043990 596 SKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQ 658 (911)
Q Consensus 596 tkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq 658 (911)
|+++++|+|++.+++||+||+|||+..+.|++||++|.||...+++ |+... |...+...
T Consensus 92 T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~--~~~~~--~~~~~~~i 150 (163)
T 2hjv_A 92 TDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAIS--FVTAF--EKRFLADI 150 (163)
T ss_dssp CGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEE--EECGG--GHHHHHHH
T ss_pred CChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEE--EecHH--HHHHHHHH
Confidence 9999999999999999999999999999999999999998766544 45433 34444443
No 48
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=173.77 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=98.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
..+.|+..|.++|.... .+.|+|||+++..+++.+...|...|+.+..++|+++..+|.+++++|+++... +|++
T Consensus 28 ~~~~K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLva 102 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVA 102 (185)
T ss_dssp CGGGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEE
T ss_pred CcHHHHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEE
Confidence 35789999999998743 478999999999999999999999999999999999999999999999986555 8899
Q ss_pred cCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 596 SKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 596 tkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
|+++++|+|++.++.||+||+|||+..+.|++||++|.|++..| |.|++..
T Consensus 103 T~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 153 (185)
T 2jgn_A 103 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA--TSFFNER 153 (185)
T ss_dssp EC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEE--EEEECGG
T ss_pred cChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEE--EEEEchh
Confidence 99999999999999999999999999999999999999987555 4455543
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.74 E-value=2.7e-17 Score=197.85 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=103.1
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
....|..+|.+++..... .+.++||||+.....+.|...|...|+++..|+|.+...+|..+..+|+.+ . ++|+
T Consensus 413 ~~~~K~~al~~~i~~~~~-~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~---VlIA 486 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYM-TGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--A---VTIA 486 (844)
T ss_dssp SHHHHHHHHHHHHHHHHH-HTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--C---EEEE
T ss_pred CHHHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--e---EEEe
Confidence 456788888888876543 478999999999999999999999999999999999877776555566542 2 8999
Q ss_pred cCCcccccCCC--------CCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEE
Q 043990 596 SKAGGCGLNLI--------GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 596 tkagg~GLNL~--------~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~V 641 (911)
|.++|+|+|+. +..+||.||.|-++..|.|++||++|.|..-....
T Consensus 487 TdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~ 540 (844)
T 1tf5_A 487 TNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQF 540 (844)
T ss_dssp ETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred CCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEE
Confidence 99999999999 78899999999999999999999999998755443
No 50
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.72 E-value=2.2e-16 Score=189.51 Aligned_cols=122 Identities=10% Similarity=0.098 Sum_probs=105.7
Q ss_pred cccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 043990 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLL 594 (911)
Q Consensus 515 ~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~Ll 594 (911)
.....|..+|.+++..... .+.+|||||......+.|...|...|+++..|+|.....+|..+.++|+.+ .++|
T Consensus 421 ~~~~~K~~al~~~i~~~~~-~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G-----~VtI 494 (853)
T 2fsf_A 421 MTEAEKIQAIIEDIKERTA-KGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA-----AVTI 494 (853)
T ss_dssp SSHHHHHHHHHHHHHHHHT-TTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT-----CEEE
T ss_pred eCHHHHHHHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC-----eEEE
Confidence 4456799999888877654 578999999999999999999999999999999998877777777888864 2899
Q ss_pred ecCCcccccCCCCC-------------------------------------CEEEEeCCCCCcchHHHHHHhhhhcCCcc
Q 043990 595 SSKAGGCGLNLIGG-------------------------------------NRLVLFDPDWNPANDKQAAARVWRDGQKK 637 (911)
Q Consensus 595 Stkagg~GLNL~~A-------------------------------------n~VIl~Dp~WNPa~~~QAigR~~RiGQkk 637 (911)
+|..+|+|+|+... .+||.||.|-++..|.|++||++|.|..-
T Consensus 495 ATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G 574 (853)
T 2fsf_A 495 ATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAG 574 (853)
T ss_dssp EESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred ecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCe
Confidence 99999999999853 59999999999999999999999999875
Q ss_pred cEEEE
Q 043990 638 RVFIY 642 (911)
Q Consensus 638 ~V~Vy 642 (911)
....|
T Consensus 575 ~s~~f 579 (853)
T 2fsf_A 575 SSRFY 579 (853)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 54433
No 51
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=170.08 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=106.7
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
...|+..|.++|.. .+.|+|||++++..++.+...|...|+++..++|+++..+|.+++++|+++... +|++|
T Consensus 39 ~~~K~~~L~~~l~~----~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT 111 (191)
T 2p6n_A 39 EEAKMVYLLECLQK----TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVAT 111 (191)
T ss_dssp GGGHHHHHHHHHTT----SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEEC
T ss_pred hHHHHHHHHHHHHh----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEc
Confidence 46788888877754 356999999999999999999999999999999999999999999999986544 89999
Q ss_pred CCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 597 KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 597 kagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
+++++|||++.+++||+||+|||+..+.||+||++|.|++..+. .|++..
T Consensus 112 ~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i--~l~~~~ 161 (191)
T 2p6n_A 112 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIAT--TFINKA 161 (191)
T ss_dssp HHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEE--EEECTT
T ss_pred CchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEE--EEEcCc
Confidence 99999999999999999999999999999999999999977554 455544
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.71 E-value=1.4e-16 Score=183.36 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=87.1
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCE----
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNR---- 610 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~---- 610 (911)
.+.++|||++....++.+...|...|+++..++|. +|.+++++|+++..+ +|++|.++++|+|++ ..+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 35689999999999999999999999999999997 688899999986555 899999999999998 555
Q ss_pred -------------EEEeCCCCCcchHHHHHHhhhhcCCcc-cEEEE
Q 043990 611 -------------LVLFDPDWNPANDKQAAARVWRDGQKK-RVFIY 642 (911)
Q Consensus 611 -------------VIl~Dp~WNPa~~~QAigR~~RiGQkk-~V~Vy 642 (911)
||+++.+.+++.+.|++||++|.|... .+++|
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 578889999999999999999999654 44443
No 53
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.71 E-value=2.8e-17 Score=163.87 Aligned_cols=124 Identities=16% Similarity=0.231 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCC
Q 043990 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKA 598 (911)
Q Consensus 519 ~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStka 598 (911)
.|+..|.+++... .+.|+|||++....++.+...|...|+.+..++|+++..+|.++++.|+++... +|++|++
T Consensus 16 ~K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~ 89 (165)
T 1fuk_A 16 YKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDL 89 (165)
T ss_dssp GHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGG
T ss_pred hHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcCh
Confidence 3999999998874 468999999999999999999999999999999999999999999999986554 8899999
Q ss_pred cccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 043990 599 GGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTI 650 (911)
Q Consensus 599 gg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTI 650 (911)
+++|+|++.+++||+||++|++..+.|++||++|.|+...| |.|+.....
T Consensus 90 ~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~~~~~ 139 (165)
T 1fuk_A 90 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNEDV 139 (165)
T ss_dssp GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE--EEEEETTTH
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEEcchHH
Confidence 99999999999999999999999999999999999977655 456666643
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.70 E-value=1.5e-16 Score=184.74 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=89.2
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEE-
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL- 613 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl- 613 (911)
.+.++|||++....++.+...|...|+.+..++|. +|.+++++|+++... +|++|.++++|||+++ ++||.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 36799999999999999999999999999999995 788899999986555 8999999999999999 99998
Q ss_pred -------------------eCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 043990 614 -------------------FDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGT 649 (911)
Q Consensus 614 -------------------~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gT 649 (911)
||+|.+++.+.|++||++|.|.. +-..|.|+....
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~~ 314 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGATS 314 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEcccc
Confidence 88999999999999999999963 233455566653
No 55
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.70 E-value=1.4e-15 Score=182.78 Aligned_cols=121 Identities=11% Similarity=0.091 Sum_probs=103.4
Q ss_pred cccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 043990 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLL 594 (911)
Q Consensus 515 ~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~Ll 594 (911)
.....|..+|...+..... .+.+||||+......+.|...|...|+++..|+|.....+|..+.+.|+.+ . ++|
T Consensus 440 ~t~~~K~~al~~~i~~~~~-~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~---VtI 513 (922)
T 1nkt_A 440 KTEEAKYIAVVDDVAERYA-KGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--G---VTV 513 (922)
T ss_dssp SCHHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--C---EEE
T ss_pred eCHHHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEE
Confidence 3456788888888877654 578999999999999999999999999999999998877776667788763 2 899
Q ss_pred ecCCcccccCCCCC----------------------------------------------------CEEEEeCCCCCcch
Q 043990 595 SSKAGGCGLNLIGG----------------------------------------------------NRLVLFDPDWNPAN 622 (911)
Q Consensus 595 Stkagg~GLNL~~A----------------------------------------------------n~VIl~Dp~WNPa~ 622 (911)
+|..+|+|+|+... .+||.||.+-++..
T Consensus 514 ATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~ri 593 (922)
T 1nkt_A 514 ATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRI 593 (922)
T ss_dssp EETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHH
T ss_pred ecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHH
Confidence 99999999999853 59999999999999
Q ss_pred HHHHHHhhhhcCCcccEEE
Q 043990 623 DKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 623 ~~QAigR~~RiGQkk~V~V 641 (911)
|.|++||++|.|..-....
T Consensus 594 y~qr~GRTGRqGdpG~s~f 612 (922)
T 1nkt_A 594 DNQLRGRSGRQGDPGESRF 612 (922)
T ss_dssp HHHHHHTSSGGGCCEEEEE
T ss_pred HHHHhcccccCCCCeeEEE
Confidence 9999999999998754433
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.69 E-value=1.6e-16 Score=191.22 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=94.8
Q ss_pred eEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCC-
Q 043990 538 RIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDP- 616 (911)
Q Consensus 538 KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp- 616 (911)
..|||+...+.++.+...|...|+.+..++|+++..+|.++++.|+++++ ...+|++|.+++.|||+ .+++||+++.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g-~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND-PCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTS-SCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCC-CeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 44788888999999999999999999999999999999999999998322 22489999999999999 9999999999
Q ss_pred -------------CCCcchHHHHHHhhhhcCCc-ccEEEEEEEeC
Q 043990 617 -------------DWNPANDKQAAARVWRDGQK-KRVFIYRFLST 647 (911)
Q Consensus 617 -------------~WNPa~~~QAigR~~RiGQk-k~V~VyrLi~~ 647 (911)
+++++.+.|++||++|.|+. .+..+|++...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 45677766443
No 57
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.69 E-value=4.5e-16 Score=180.22 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=88.0
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEe
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLF 614 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~ 614 (911)
.+.++|||++....++.+...|...|+.+..++|.+ ++++++.|+++... +|++|.++++|||+++ +.||.|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 356999999999999999999999999999999975 46799999986555 8999999999999999 999999
Q ss_pred C--------------------CCCCcchHHHHHHhhhhcCC-cccEEE
Q 043990 615 D--------------------PDWNPANDKQAAARVWRDGQ-KKRVFI 641 (911)
Q Consensus 615 D--------------------p~WNPa~~~QAigR~~RiGQ-kk~V~V 641 (911)
| +|.+++.+.|++||++|.|. ...+++
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~ 306 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYV 306 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEE
Confidence 8 89999999999999999997 344433
No 58
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=158.76 Aligned_cols=123 Identities=15% Similarity=0.238 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCC
Q 043990 519 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKA 598 (911)
Q Consensus 519 ~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStka 598 (911)
.|+..|..++... .+.++|||+++..+++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|++
T Consensus 20 ~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~ 93 (175)
T 2rb4_A 20 DKYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNV 93 (175)
T ss_dssp HHHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCS
T ss_pred hHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecc
Confidence 4888888887653 467999999999999999999999999999999999999999999999986554 8999999
Q ss_pred cccccCCCCCCEEEEeCCC------CCcchHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 043990 599 GGCGLNLIGGNRLVLFDPD------WNPANDKQAAARVWRDGQKKRVFIYRFLSTGT 649 (911)
Q Consensus 599 gg~GLNL~~An~VIl~Dp~------WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gT 649 (911)
+++|+|++.+++||+||+| |++..+.|++||++|.|+. ..+|.|+..+.
T Consensus 94 ~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 94 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 9999999999999999999 6678999999999999965 45566776654
No 59
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.67 E-value=3.2e-16 Score=162.99 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=110.3
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
.+.|+.+|.+++... .+.++|||++....++.+...|...|+.+..++|+++..+|.+++++|+++... +|++|
T Consensus 15 ~~~k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT 88 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVAT 88 (212)
T ss_dssp TTSHHHHHHHHHHHH---CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEEC
T ss_pred HHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEec
Confidence 478999999998854 468999999999999999999999999999999999999999999999986544 89999
Q ss_pred CCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCC
Q 043990 597 KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTG 648 (911)
Q Consensus 597 kagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~g 648 (911)
.++++|||++++++||+||++|++..+.|++||++|.|+... +|.|++..
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~l~~~~ 138 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGR--VVLLYGPR 138 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BE--EEEEECGG
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCe--EEEEEchh
Confidence 999999999999999999999999999999999999997754 44555543
No 60
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.67 E-value=7.3e-16 Score=177.89 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=80.4
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEE-
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL- 613 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl- 613 (911)
.+.++|||++....++.+...|...|+++..++| ++|.+++++|+++... +|++|.++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 3689999999999999999999999999999999 3688999999987655 899999999999999 999985
Q ss_pred ------------------eCCCCCcchHHHHHHhhhhcC-CcccEEE
Q 043990 614 ------------------FDPDWNPANDKQAAARVWRDG-QKKRVFI 641 (911)
Q Consensus 614 ------------------~Dp~WNPa~~~QAigR~~RiG-Qkk~V~V 641 (911)
|+.+.+++.+.|++||++|.| +.-.|++
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~ 294 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYY 294 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEE
Confidence 899999999999999999985 4444443
No 61
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.66 E-value=1e-15 Score=187.92 Aligned_cols=122 Identities=13% Similarity=0.093 Sum_probs=99.5
Q ss_pred HHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH-----------cCCCEEEEeCCCCHHHHHHHHHhhcCC--CCCceEE
Q 043990 526 RLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE-----------RRYPYLRLDGTTSISKRQKLVNHFNDP--SKNEFVF 592 (911)
Q Consensus 526 ~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~-----------~gi~~~~LdGsts~~~R~~iv~~Fn~~--~~~~~v~ 592 (911)
.++..+....+.++|||++....++.+...|.. .++.+..++|+++.++|.++++.|..+ ..+...+
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV 372 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV 372 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE
Confidence 333333333578999999999999999998875 578899999999999999999999811 0134569
Q ss_pred EEecCCcccccCCCCCCEEEEeCC------------------CCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 043990 593 LLSSKAGGCGLNLIGGNRLVLFDP------------------DWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTI 650 (911)
Q Consensus 593 LlStkagg~GLNL~~An~VIl~Dp------------------~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTI 650 (911)
|++|.++++|||+.+.++||.++. |.+.+.+.||+||++|. ++-.+|+|++....
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred EEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999999999999666 88999999999999998 55677888765444
No 62
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.66 E-value=7.5e-16 Score=185.85 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=87.9
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEE-
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL- 613 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl- 613 (911)
.+.++|||++....++.+...|...|+++..++|. +|.+++++|+++... +|++|.++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 47899999999999999999999999999999994 899999999986555 899999999999999 999997
Q ss_pred -------------------eCCCCCcchHHHHHHhhhhc-CCcccEEE
Q 043990 614 -------------------FDPDWNPANDKQAAARVWRD-GQKKRVFI 641 (911)
Q Consensus 614 -------------------~Dp~WNPa~~~QAigR~~Ri-GQkk~V~V 641 (911)
||+|.+++.+.|++||++|. |+.-.+++
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~ 528 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYH 528 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEE
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEE
Confidence 67888999999999999999 55544443
No 63
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.47 E-value=8.3e-18 Score=168.65 Aligned_cols=119 Identities=17% Similarity=0.220 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecC
Q 043990 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSK 597 (911)
Q Consensus 518 S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStk 597 (911)
+.|+..|..++... .+.++|||+++...++.+...|...|+.+..++|+++..+|.+++++|+++.. .+|++|+
T Consensus 15 ~~k~~~l~~ll~~~---~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~---~vLvaT~ 88 (170)
T 2yjt_D 15 EHKTALLVHLLKQP---EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV---NVLVATD 88 (170)
Confidence 66888888888753 46899999999999999999999999999999999999999999999998644 3899999
Q ss_pred CcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEE
Q 043990 598 AGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIY 642 (911)
Q Consensus 598 agg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~Vy 642 (911)
++++|+|++.+++||+||++||+..+.|++||++|.||+..|+++
T Consensus 89 ~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 89 VAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 999999999999999999999999999999999999998776544
No 64
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.63 E-value=1.5e-14 Score=189.84 Aligned_cols=131 Identities=17% Similarity=0.278 Sum_probs=90.6
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..+.|.|.+++.-+++ ....++++.+||+|||+++...|+..+.+.. ..++|+|+|. +|+.|-.+
T Consensus 925 ~~fnpiQ~q~~~~l~~---------~~~nvlv~APTGSGKTliaelail~~l~~~~-----~~kavyi~P~raLa~q~~~ 990 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVYN---------SDDNVFVGAPTGSGKTICAEFAILRMLLQSS-----EGRCVYITPMEALAEQVYM 990 (1724)
T ss_dssp SBCCHHHHHHHHHHHS---------CCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----TCCEEEECSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---------CCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----CCEEEEEcChHHHHHHHHH
Confidence 3578999999988863 3457899999999999998777776665541 3479999998 67777677
Q ss_pred HHHHHhCC--CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccc---cCCCCcEEEEcCccccCCc
Q 043990 261 EIKKWVGG--RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFS---CSESCDLLICDEAHRLKND 334 (911)
Q Consensus 261 Ei~k~~~~--~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~---~~~~~~lVIlDEAH~lKN~ 334 (911)
++.+.++. ..++..+.|....+... ....+|+|+|++.+........ ......+||+||+|.+...
T Consensus 991 ~~~~~f~~~~g~~V~~ltGd~~~~~~~--------~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 991 DWYEKFQDRLNKKVVLLTGETSTDLKL--------LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHTTTSCCCEEECCSCHHHHHHH--------HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHhchhcCCEEEEEECCCCcchhh--------cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 77665442 45666666654432211 1235799999998743332211 1235789999999999653
No 65
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.63 E-value=3.6e-15 Score=178.69 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=89.1
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEE---
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRL--- 611 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~V--- 611 (911)
.+.++|||++....++.+...|...|+++..++|. +|.+++++|+++... +|++|+++++|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEEC
Confidence 36799999999999999999999999999999994 788899999986555 899999999999996 8888
Q ss_pred -----------------EEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEe
Q 043990 612 -----------------VLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLS 646 (911)
Q Consensus 612 -----------------Il~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~ 646 (911)
|+||+|-+++.+.||+||++|.|..+- .+|.|++
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 777888889999999999999986433 2455565
No 66
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.61 E-value=9.6e-14 Score=167.83 Aligned_cols=125 Identities=12% Similarity=0.078 Sum_probs=106.7
Q ss_pred chHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecC
Q 043990 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSK 597 (911)
Q Consensus 518 S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStk 597 (911)
.+++..|...|..... .+.++|||++...+++.|...|...|+++..++|.++..+|.+++++|+.+... +|++|.
T Consensus 422 ~~~~~~Ll~~l~~~~~-~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~ 497 (664)
T 1c4o_A 422 ENQILDLMEGIRERAA-RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGIN 497 (664)
T ss_dssp TTHHHHHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESC
T ss_pred cchHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccC
Confidence 3455555555555443 478999999999999999999999999999999999999999999999986544 899999
Q ss_pred CcccccCCCCCCEEEEeCC-----CCCcchHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 043990 598 AGGCGLNLIGGNRLVLFDP-----DWNPANDKQAAARVWRDGQKKRVFIYRFLSTGT 649 (911)
Q Consensus 598 agg~GLNL~~An~VIl~Dp-----~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gT 649 (911)
++++|+|++.++.||++|+ ++++..+.|++||++|.|. -.++.|+...+
T Consensus 498 ~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 498 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 9999999999999999998 8999999999999999863 34555666654
No 67
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.61 E-value=1.8e-14 Score=189.10 Aligned_cols=135 Identities=19% Similarity=0.196 Sum_probs=92.3
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCC----CCCCceEEEEeCc-hhhH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDG----KPMVKKAIIVTPT-SLVS 256 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~----~p~~~~~LIV~P~-sLl~ 256 (911)
..|.|.|.+++..+++ .....+++.+||+|||+.+...|...+.+.... .....++|+|+|. +|+.
T Consensus 78 ~~ln~iQs~~~~~al~---------~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~ 148 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALE---------TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQ 148 (1724)
T ss_dssp SBCCHHHHHTHHHHHT---------CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHHc---------CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHH
Confidence 4688999999988763 235789999999999999877776655442211 1124589999997 7778
Q ss_pred HHHHHHHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccc---cCCCCcEEEEcCccccC
Q 043990 257 NWEAEIKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFS---CSESCDLLICDEAHRLK 332 (911)
Q Consensus 257 qW~~Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~---~~~~~~lVIlDEAH~lK 332 (911)
+-.+++.+.+.. ++.|..+.|+...... .....+|+|+|+|.+........ .....++||+||+|.+.
T Consensus 149 e~~~~l~~~~~~~gi~V~~~tGd~~~~~~--------~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 149 EMVGSFGKRLATYGITVAELTGDHQLCKE--------EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHTTTTCCEEECCSSCSSCCT--------TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCcc--------ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 888888776653 5666666665432110 12346899999998743322111 12467899999999885
Q ss_pred C
Q 043990 333 N 333 (911)
Q Consensus 333 N 333 (911)
+
T Consensus 221 d 221 (1724)
T 4f92_B 221 D 221 (1724)
T ss_dssp S
T ss_pred C
Confidence 4
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.59 E-value=1.1e-14 Score=173.51 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=84.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEE--
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLV-- 612 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VI-- 612 (911)
.+.++|||++.++.++.+.+.|...|+++..++|++++.+ |..+.. .+|++|.++++|||+. ++.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEEec
Confidence 4689999999999999999999999999999999999654 433222 5999999999999986 99988
Q ss_pred --------EeC-----------CCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 043990 613 --------LFD-----------PDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTI 650 (911)
Q Consensus 613 --------l~D-----------p~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gTI 650 (911)
+|| .|-++..+.||+||++| |..-. |.|+.....
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e~ 516 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGER 516 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCCB
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecchh
Confidence 566 78888999999999999 65533 778876543
No 69
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.59 E-value=2.2e-15 Score=163.40 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=94.8
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..|+|||.+++.+++.. +.+||+++||+|||+++++++..++..+ ..++|||||+ .|+.||.+
T Consensus 112 ~~l~~~Q~~ai~~~l~~----------~~~ll~~~tGsGKT~~~~~~~~~~~~~~------~~~~lil~Pt~~L~~q~~~ 175 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN----------RRRILNLPTSAGRSLIQALLARYYLENY------EGKILIIVPTTALTTQMAD 175 (282)
T ss_dssp CCCCHHHHHHHHHHHHH----------SEEEECCCTTSCHHHHHHHHHHHHHHHC------SSEEEEECSSHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhc----------CCeEEEcCCCCCcHHHHHHHHHHHHHcC------CCeEEEEECCHHHHHHHHH
Confidence 37999999999998751 3568999999999999999888776543 2489999998 78899999
Q ss_pred HHHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCc
Q 043990 261 EIKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~ 334 (911)
++.+|... ...+..+.++..... ......+|+|+||+++......+ ...+++||+||||++.+.
T Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~--~~~~~~vIiDEaH~~~~~ 240 (282)
T 1rif_A 176 DFVDYRLFSHAMIKKIGGGASKDD--------KYKNDAPVVVGTWQTVVKQPKEW--FSQFGMMMNDECHLATGK 240 (282)
T ss_dssp HHHHHTSCCGGGEEECSTTCSSTT--------CCCTTCSEEEECHHHHTTSCGGG--GGGEEEEEEETGGGCCHH
T ss_pred HHHHhcccccceEEEEeCCCcchh--------hhccCCcEEEEchHHHHhhHHHH--HhhCCEEEEECCccCCcc
Confidence 99999753 234444444332211 11245689999999997654433 246899999999999753
No 70
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.58 E-value=6.7e-15 Score=160.83 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=108.1
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS 596 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt 596 (911)
.+.|+.+|.+++... .+.++|||++....++.+...|...|+.+..++|.+++.+|.++++.|+++... +|++|
T Consensus 12 ~~~K~~~L~~ll~~~---~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT 85 (300)
T 3i32_A 12 VRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVAT 85 (300)
T ss_dssp SSSHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEEC
T ss_pred HHHHHHHHHHHHHhc---CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEe
Confidence 477999999998765 368999999999999999999999999999999999999999999999986554 89999
Q ss_pred CCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 043990 597 KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGT 649 (911)
Q Consensus 597 kagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gT 649 (911)
+++++|||++++++||+||++|++..|.|++||++|.|+.. .+|.|++...
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 99999999999999999999999999999999999999875 4455665543
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.52 E-value=1.4e-12 Score=153.80 Aligned_cols=121 Identities=11% Similarity=0.153 Sum_probs=102.5
Q ss_pred cccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 043990 515 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLL 594 (911)
Q Consensus 515 ~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~Ll 594 (911)
.....|...+.+.+..... .+.+||||+++....+.|...|...|+++..|+|.....+|.-+..+|+.+ . +++
T Consensus 454 ~t~~eK~~al~~~I~~~~~-~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~---VtV 527 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYK-KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--M---VTI 527 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHH-HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--C---EEE
T ss_pred ecHHHHHHHHHHHHHHHhh-CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--e---EEE
Confidence 4456788888888877654 478999999999999999999999999999999996655555555666653 3 899
Q ss_pred ecCCcccccCCC--------CCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEE
Q 043990 595 SSKAGGCGLNLI--------GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 595 Stkagg~GLNL~--------~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~V 641 (911)
+|..+|+|+|+. +..+||.++.|-++..|.|++||++|.|..-....
T Consensus 528 ATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~ 582 (822)
T 3jux_A 528 ATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIF 582 (822)
T ss_dssp EETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEE
T ss_pred EcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEE
Confidence 999999999997 77899999999999999999999999998765443
No 72
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.48 E-value=2.7e-14 Score=147.35 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=90.5
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHH-HH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSN-WE 259 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~q-W~ 259 (911)
..|+|||.+++.++++ .+.+|+..+||+|||++++.++..++....... ...++|||||+ .|+.| |.
T Consensus 32 ~~l~~~Q~~~i~~~~~----------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~-~~~~~lil~p~~~L~~q~~~ 100 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE----------GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKAS-EPGKVIVLVNKVLLVEQLFR 100 (216)
T ss_dssp CCCCHHHHHHHHHHHT----------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTT-CCCCEEEEESSHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhc----------CCCEEEEcCCCCCHHHHHHHHHHHHHhhccccc-CCCcEEEEECHHHHHHHHHH
Confidence 4688999999998863 256899999999999999988877655421101 13589999999 67788 99
Q ss_pred HHHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhcccc-------ccCCCCcEEEEcCccccC
Q 043990 260 AEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKF-------SCSESCDLLICDEAHRLK 332 (911)
Q Consensus 260 ~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~-------~~~~~~~lVIlDEAH~lK 332 (911)
+++.+|.+..+.+..+.+....... +......++|+|+||+.+....... .....|++||+||||++.
T Consensus 101 ~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 101 KEFQPFLKKWYRVIGLSGDTQLKIS-----FPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp HTHHHHHTTTSCEEECCC---CCCC-----HHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC----
T ss_pred HHHHHHhccCceEEEEeCCcccchh-----HHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc
Confidence 9999998765666666654322110 0000123679999999986544321 123578999999999984
Q ss_pred C
Q 043990 333 N 333 (911)
Q Consensus 333 N 333 (911)
.
T Consensus 176 ~ 176 (216)
T 3b6e_A 176 K 176 (216)
T ss_dssp -
T ss_pred c
Confidence 3
No 73
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.44 E-value=2.7e-13 Score=143.34 Aligned_cols=114 Identities=22% Similarity=0.332 Sum_probs=87.7
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..|+|||.+++.++++ .+.+||+++||+|||+++++++..+ ..++|||||+ .|+.||.+
T Consensus 92 ~~l~~~Q~~ai~~~~~----------~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~liv~P~~~L~~q~~~ 151 (237)
T 2fz4_A 92 ISLRDYQEKALERWLV----------DKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKE 151 (237)
T ss_dssp CCCCHHHHHHHHHHTT----------TSEEEEEESSSTTHHHHHHHHHHHS----------CSCEEEEESSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHh----------CCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHH
Confidence 4789999999998743 1347999999999999999887653 2479999999 88899999
Q ss_pred HHHHHhCCCeE-EEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCccccCCc
Q 043990 261 EIKKWVGGRVQ-LIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 261 Ei~k~~~~~~~-v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~lKN~ 334 (911)
++.+ ++ .. +..+.+... ...+|+|+||+.+......+. ..|++|||||||++.+.
T Consensus 152 ~~~~-~~--~~~v~~~~g~~~--------------~~~~i~v~T~~~l~~~~~~~~--~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 152 RLGI-FG--EEYVGEFSGRIK--------------ELKPLTVSTYDSAYVNAEKLG--NRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp HHGG-GC--GGGEEEESSSCB--------------CCCSEEEEEHHHHHHTHHHHT--TTCSEEEEECSSCCCTT
T ss_pred HHHh-CC--CCeEEEEeCCCC--------------CcCCEEEEeHHHHHhhHHHhc--ccCCEEEEECCccCCCh
Confidence 9999 44 33 444444332 134799999999976655442 46999999999999764
No 74
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.43 E-value=6.8e-13 Score=139.51 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=92.6
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++.++.. .+.+|+..+||+|||++++..+...+...........++|||||+ .|+.||.++
T Consensus 47 ~~~~~Q~~~i~~~~~----------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 116 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ----------GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEV 116 (236)
T ss_dssp BCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHH
Confidence 467999999998853 256899999999999998776665443321111123579999998 888999999
Q ss_pred HHHHhCC-CeEEEEecCCcchh-hhccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCCc
Q 043990 262 IKKWVGG-RVQLIALCESTRDD-VVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~-~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN~ 334 (911)
+.++... .+.+..+.++.... ....+ ..++|+|+|++.+...... ......+++||+||||++.+.
T Consensus 117 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~ 186 (236)
T 2pl3_A 117 LRKVGKNHDFSAGLIIGGKDLKHEAERI-------NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDM 186 (236)
T ss_dssp HHHHTTTSSCCEEEECCC--CHHHHHHH-------TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHhCCCCeeEEEEECCCCHHHHHHhC-------CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcC
Confidence 9999764 35555555443221 11111 2468999999998654332 122457899999999998654
No 75
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.42 E-value=4.5e-13 Score=137.53 Aligned_cols=132 Identities=16% Similarity=0.132 Sum_probs=91.6
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..+.+ .+.+|+..+||+|||++++..+...+...... ....++|||||+ .|+.||.++
T Consensus 23 ~~~~~Q~~~i~~~~~----------~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~-~~~~~~lil~P~~~L~~q~~~~ 91 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----------GKDLIGQARTGTGKTLAFALPIAERLAPSQER-GRKPRALVLTPTRELALQVASE 91 (207)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCT-TCCCSEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcC----------CCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCcEEEEECCHHHHHHHHHH
Confidence 577999999998853 25689999999999999777666554332111 123579999999 888999999
Q ss_pred HHHHhCCCeEEEEecCCcch-hhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccC
Q 043990 262 IKKWVGGRVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLK 332 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~-~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lK 332 (911)
+.++.+. +.+..+.++... .....+. ..++|+|+|++.+...... ......+++||+||||++.
T Consensus 92 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 92 LTAVAPH-LKVVAVYGGTGYGKQKEALL------RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp HHHHCTT-SCEEEECSSSCSHHHHHHHH------HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred HHHHhhc-ceEEEEECCCChHHHHHHhh------CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999875 445555544322 1111111 2367999999988544321 1224578999999999974
No 76
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.37 E-value=2.8e-12 Score=133.52 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=88.3
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..++. .+.+|+..+||+|||++++..+...+... ....++|||||+ .|+.||.++
T Consensus 36 ~~~~~Q~~~i~~~~~----------~~~~lv~~pTGsGKT~~~~~~~l~~l~~~----~~~~~~lil~Pt~~L~~q~~~~ 101 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----------GHDVLAQAQSGTGKTGTFSIAALQRIDTS----VKAPQALMLAPTRELALQIQKV 101 (224)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHHHCCTT----CCSCCEEEECSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhc----------CCCEEEECCCCCcHHHHHHHHHHHHHhcc----CCCceEEEEECCHHHHHHHHHH
Confidence 588999999998853 24679999999999998655554433222 123589999998 788999999
Q ss_pred HHHHhCC-CeEEEEecCCcchh-hhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCc
Q 043990 262 IKKWVGG-RVQLIALCESTRDD-VVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~-~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~ 334 (911)
+.++... .+.+..+.++.... .... ....+|+|+|++.+...... ......+++||+||||++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 170 (224)
T 1qde_A 102 VMALAFHMDIKVHACIGGTSFVEDAEG-------LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS 170 (224)
T ss_dssp HHHHTTTSCCCEEEECC-----------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHT
T ss_pred HHHHhcccCceEEEEeCCcchHHHHhc-------CCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhh
Confidence 9999764 45555555443221 1111 12368999999998543321 122457899999999998543
No 77
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.36 E-value=4.4e-12 Score=131.83 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=91.4
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..+.+ .+.+|+..+||+|||++++..+...+... ....++|||||+ .|+.||.++
T Consensus 26 ~~~~~Q~~~i~~~~~----------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil~Pt~~L~~q~~~~ 91 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----------GESMVGQSQTGTGKTHAYLLPIMEKIKPE----RAEVQAVITAPTRELATQIYHE 91 (219)
T ss_dssp SCCHHHHHHHHHHHH----------TCCEEEECCSSHHHHHHHHHHHHHHCCTT----SCSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEECCCCChHHHHHHHHHHHHHHhC----cCCceEEEEcCcHHHHHHHHHH
Confidence 467999999998864 24679999999999998776665544322 123579999998 788999999
Q ss_pred HHHHhCC-----CeEEEEecCCcchh-hhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCc
Q 043990 262 IKKWVGG-----RVQLIALCESTRDD-VVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 262 i~k~~~~-----~~~v~~~~~~~r~~-~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~ 334 (911)
+.++... .+.+..+.++.... ....+ ...++|+|+|++.+...... ......+++||+||||++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~ 165 (219)
T 1q0u_A 92 TLKITKFCPKDRMIVARCLIGGTDKQKALEKL------NVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDM 165 (219)
T ss_dssp HHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC------SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHT
T ss_pred HHHHhhhcccccceEEEEEeCCCCHHHHHHHc------CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhh
Confidence 9999753 24455555443322 11111 13568999999988643321 112346889999999998543
No 78
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.35 E-value=2.3e-12 Score=133.85 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=91.7
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..+++ .+.+|+..+||+|||++++..+...+... ....++|||||+ .|+.||.++
T Consensus 36 ~~~~~Q~~~i~~~~~----------~~~~li~~~TGsGKT~~~~~~~~~~~~~~----~~~~~~lil~Pt~~L~~q~~~~ 101 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----------GMDVLCQAKSGMGKTAVFVLATLQQLEPV----TGQVSVLVMCHTRELAFQISKE 101 (220)
T ss_dssp CCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHCCCC----TTCCCEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEECCCCCchhhhhhHHHHHhhhcc----CCCEEEEEEeCCHHHHHHHHHH
Confidence 377999999998863 24579999999999998888777654332 112479999998 788999999
Q ss_pred HHHHhCC--CeEEEEecCCcchh-hhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccC
Q 043990 262 IKKWVGG--RVQLIALCESTRDD-VVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLK 332 (911)
Q Consensus 262 i~k~~~~--~~~v~~~~~~~r~~-~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lK 332 (911)
+.++... .+.+..+.++.... ....+. ...++|+|+|++.+...... ......+++||+||||++.
T Consensus 102 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 171 (220)
T 1t6n_A 102 YERFSKYMPNVKVAVFFGGLSIKKDEEVLK-----KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 171 (220)
T ss_dssp HHHHTTTSTTCCEEEESCCSCHHHHHHHHH-----HSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHH
T ss_pred HHHHHhhCCCceEEEEeCCCChHHHHHHHh-----cCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHh
Confidence 9999753 35565555543321 111111 12357999999998543321 1124578999999999984
No 79
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.34 E-value=4.8e-12 Score=129.84 Aligned_cols=131 Identities=16% Similarity=0.137 Sum_probs=91.4
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..+.+ .+.+|+..+||+|||+.++..+...+... ....++|||||+ .|+.||.++
T Consensus 25 ~~~~~Q~~~i~~~~~----------~~~~lv~apTGsGKT~~~~~~~~~~~~~~----~~~~~~lil~Pt~~L~~q~~~~ 90 (206)
T 1vec_A 25 KPSPIQEESIPIALS----------GRDILARAKNGTGKSGAYLIPLLERLDLK----KDNIQAMVIVPTRELALQVSQI 90 (206)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCSSSTTHHHHHHHHHHHCCTT----SCSCCEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcc----------CCCEEEECCCCCchHHHHHHHHHHHhccc----CCCeeEEEEeCcHHHHHHHHHH
Confidence 477999999998853 25789999999999998776665543322 123479999998 778999999
Q ss_pred HHHHhCC--CeEEEEecCCcchh-hhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCC
Q 043990 262 IKKWVGG--RVQLIALCESTRDD-VVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 262 i~k~~~~--~~~v~~~~~~~r~~-~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN 333 (911)
+.++... ...+..+.++.... ....+ ...++|+|+|++.+...... ......+++||+||||++..
T Consensus 91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 91 CIQVSKHMGGAKVMATTGGTNLRDDIMRL------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp HHHHTTTSSSCCEEEECSSSCHHHHHHHT------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred HHHHHhhcCCceEEEEeCCccHHHHHHhc------CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh
Confidence 9999753 34555555443321 11111 13468999999998544321 22245789999999999854
No 80
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.34 E-value=6.2e-12 Score=133.65 Aligned_cols=134 Identities=18% Similarity=0.205 Sum_probs=92.5
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCC-----CCCCceEEEEeCc-hhhH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDG-----KPMVKKAIIVTPT-SLVS 256 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~-----~p~~~~~LIV~P~-sLl~ 256 (911)
.++|||.+++..+++ .+.+|+..+||+|||+.++..+...+...... .....++|||||+ .|+.
T Consensus 45 ~~~~~Q~~~i~~i~~----------~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 114 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----------HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAI 114 (253)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHH
Confidence 578999999998863 25679999999999999887776655433110 1123479999998 7889
Q ss_pred HHHHHHHHHhCC-CeEEEEecCCcc-hhhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccC
Q 043990 257 NWEAEIKKWVGG-RVQLIALCESTR-DDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLK 332 (911)
Q Consensus 257 qW~~Ei~k~~~~-~~~v~~~~~~~r-~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lK 332 (911)
||.+++.++... .+.+..+.++.. ......+ ...++|+|+|++.+...... ......+++||+||||++.
T Consensus 115 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 187 (253)
T 1wrb_A 115 QILSESQKFSLNTPLRSCVVYGGADTHSQIREV------QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML 187 (253)
T ss_dssp HHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH------SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHH
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHHHHHHh------CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHH
Confidence 999999999764 345544444432 2222211 13468999999998654322 1124568899999999974
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.33 E-value=3.1e-12 Score=134.20 Aligned_cols=131 Identities=16% Similarity=0.089 Sum_probs=90.2
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..+.. .+.+|+..+||+|||++++..+...+... ....++|||||+ .|+.||.++
T Consensus 46 ~~~~~Q~~~i~~~~~----------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~lil~Pt~~L~~q~~~~ 111 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----------GLDLIVQAKSGTGKTCVFSTIALDSLVLE----NLSTQILILAPTREIAVQIHSV 111 (230)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHHHCCTT----SCSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEECCCCCcHHHHHHHHHHHHHHhc----CCCceEEEEeCCHHHHHHHHHH
Confidence 478999999998753 24679999999999998665554433221 123589999998 788999999
Q ss_pred HHHHhCC--CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCC
Q 043990 262 IKKWVGG--RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 262 i~k~~~~--~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN 333 (911)
+.++... .+.+..+.++........ . ....+|+|+|++.+...... ......+++||+||||++-+
T Consensus 112 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~----~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 180 (230)
T 2oxc_A 112 ITAIGIKMEGLECHVFIGGTPLSQDKT--R----LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLE 180 (230)
T ss_dssp HHHHTTTSTTCCEEEECTTSCHHHHHH--H----TTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHS
T ss_pred HHHHhcccCCceEEEEeCCCCHHHHHH--h----ccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhc
Confidence 9999743 355555555443221111 0 12468999999998654321 11234688999999999844
No 82
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.33 E-value=4.3e-12 Score=134.96 Aligned_cols=131 Identities=18% Similarity=0.124 Sum_probs=91.9
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..++. .+.+|+..+||+|||++++..+...+.... ...++|||||+ .|+.||.++
T Consensus 65 ~~~~~Q~~~i~~i~~----------~~~~lv~a~TGsGKT~~~~~~il~~l~~~~----~~~~~lil~Ptr~L~~q~~~~ 130 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ----------GRDIIGLAETGSGKTGAFALPILNALLETP----QRLFALVLTPTRELAFQISEQ 130 (249)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHHHSC----CSSCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEEcCCCCCchhHhHHHHHHHHhcCC----CCceEEEEeCCHHHHHHHHHH
Confidence 578999999998853 257899999999999997776665544431 23479999998 778999999
Q ss_pred HHHHhCC-CeEEEEecCCcch-hhhccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCccccCC
Q 043990 262 IKKWVGG-RVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~-~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~lKN 333 (911)
+.++... .+.+..+.++... .....+ ...++|+|+|++.+...... ......+++||+||||++.+
T Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 200 (249)
T 3ber_A 131 FEALGSSIGVQSAVIVGGIDSMSQSLAL------AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN 200 (249)
T ss_dssp HHHHHGGGTCCEEEECTTSCHHHHHHHH------HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH
T ss_pred HHHHhccCCeeEEEEECCCChHHHHHHh------cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc
Confidence 9999753 3555555544322 111111 13468999999998654332 11245789999999999843
No 83
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.32 E-value=6.4e-12 Score=131.34 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=89.9
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCC--CCCCCceEEEEeCc-hhhHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFD--GKPMVKKAIIVTPT-SLVSNWE 259 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~--~~p~~~~~LIV~P~-sLl~qW~ 259 (911)
.++|||.+++..+++ .+.+|+..+||+|||+.++..+...+..... ......++|||+|+ .|+.||.
T Consensus 42 ~~~~~Q~~~i~~~~~----------~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 111 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ----------GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVE 111 (228)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHH
Confidence 678999999998753 2567999999999999877766554432110 11124579999998 6789999
Q ss_pred HHHHHHhCCCeEEEEecCCcchh-hhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCCc
Q 043990 260 AEIKKWVGGRVQLIALCESTRDD-VVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKND 334 (911)
Q Consensus 260 ~Ei~k~~~~~~~v~~~~~~~r~~-~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN~ 334 (911)
+++.++....+.+..+.++.... ....+ ...++|+|+|++.+...... ......+++||+||||++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 182 (228)
T 3iuy_A 112 AECSKYSYKGLKSICIYGGRNRNGQIEDI------SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDM 182 (228)
T ss_dssp HHHHHHCCTTCCEEEECC------CHHHH------HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHT
T ss_pred HHHHHhcccCceEEEEECCCChHHHHHHh------cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhcc
Confidence 99999975555555555443221 11111 12468999999998543321 112456899999999998543
No 84
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.31 E-value=7.6e-12 Score=132.23 Aligned_cols=133 Identities=19% Similarity=0.215 Sum_probs=90.8
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..++. .+.+|+..+||+|||+.++..+...+..... ...++|||+|+ .|+.||.++
T Consensus 51 ~~~~~Q~~~i~~~~~----------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~~lil~Pt~~L~~q~~~~ 117 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----------GRELLASAPTGSGKTLAFSIPILMQLKQPAN---KGFRALIISPTRELASQIHRE 117 (245)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHCSCCS---SSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEECCCCCcHHHHHHHHHHHHHhhccc---CCceEEEEeCCHHHHHHHHHH
Confidence 478999999998753 2467999999999999977766655543211 23479999998 688999999
Q ss_pred HHHHhCC-CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc---cccCCCCcEEEEcCccccC
Q 043990 262 IKKWVGG-RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK---FSCSESCDLLICDEAHRLK 332 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~---~~~~~~~~lVIlDEAH~lK 332 (911)
+.+++.. .+.+..+.+....... .. ......++|+|+|++.+...... ......+++||+||||++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~ 188 (245)
T 3dkp_A 118 LIKISEGTGFRIHMIHKAAVAAKK--FG--PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLF 188 (245)
T ss_dssp HHHHTTTSCCCEECCCHHHHHHTT--TS--TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHH
T ss_pred HHHHhcccCceEEEEecCccHHHH--hh--hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhc
Confidence 9999764 3444444333221111 00 11124578999999998554322 1224578999999999983
No 85
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.29 E-value=1.4e-11 Score=129.79 Aligned_cols=132 Identities=13% Similarity=0.082 Sum_probs=87.5
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|||.+++..++. .+.+|+..+||+|||++++..+...+... ....++|||||+ .|+.||.++
T Consensus 52 ~~~~~Q~~ai~~i~~----------~~~~li~apTGsGKT~~~~l~~l~~l~~~----~~~~~~lil~Pt~~L~~q~~~~ 117 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----------GYDVIAQAQSGTGKTATFAISILQQLEIE----FKETQALVLAPTRELAQQIQKV 117 (237)
T ss_dssp SCCHHHHHHHHHHHT----------TCCEEECCCSSHHHHHHHHHHHHHHCCTT----SCSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEECCCCCcHHHHHHHHHHHHHHhc----CCCceEEEEECcHHHHHHHHHH
Confidence 488999999998853 24579999999999998776665544322 123579999998 788999999
Q ss_pred HHHHhCC-CeEEEEecCCcc-hhhhccCcccCCCCCCccEEEEehHHHHhhcc-ccccCCCCcEEEEcCccccCC
Q 043990 262 IKKWVGG-RVQLIALCESTR-DDVVSGIDSFTDPCSSLQVLIVSYETFRMHSS-KFSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r-~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~-~~~~~~~~~lVIlDEAH~lKN 333 (911)
+.++... ...+....++.. ......+. ...++|+|+|++.+..... .......+++||+||||++..
T Consensus 118 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~ 187 (237)
T 3bor_A 118 ILALGDYMGATCHACIGGTNVRNEMQKLQ-----AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 187 (237)
T ss_dssp HHHHTTTTTCCEEEECC------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHH
T ss_pred HHHHhhhcCceEEEEECCCchHHHHHHHh-----cCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhc
Confidence 9999753 344444443322 21111111 1236899999998754332 122245689999999999843
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.28 E-value=1.1e-10 Score=137.91 Aligned_cols=92 Identities=11% Similarity=0.171 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCccc
Q 043990 522 HVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGC 601 (911)
Q Consensus 522 ~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~ 601 (911)
..+.+.|..+......++|||+.....++.+...+.. ++ +.+.|.. ..|.+++++|+.+ +...|.+.+....+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~--~~il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG--KYLVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS--CCEEEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC--CeEEEEEecCceec
Confidence 3455555555444567999999999999998887754 33 4556654 3788999999873 22223347899999
Q ss_pred ccCCCC----CCEEEEeCCCCCc
Q 043990 602 GLNLIG----GNRLVLFDPDWNP 620 (911)
Q Consensus 602 GLNL~~----An~VIl~Dp~WNP 620 (911)
|||+++ +..||++..|+-+
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~ 465 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPN 465 (540)
T ss_dssp ---------CEEEEEEESCCCCC
T ss_pred ceecCCCcccccEEEEECCCCCC
Confidence 999997 7889999988643
No 87
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.24 E-value=2.3e-11 Score=130.39 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=90.2
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.++|+|.+++..++. .+.+|+..+||+|||+.++..+...+...........++|||+|+ .|+.||.++
T Consensus 76 ~~~~~Q~~~i~~~~~----------~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 145 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----------GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGV 145 (262)
T ss_dssp BCCHHHHHHHHHHHH----------TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHH
Confidence 477999999988764 145799999999999997776665544321111123579999998 788999999
Q ss_pred HHHHhCC-CeEEEEecCCc-chhhhccCcccCCCCCCccEEEEehHHHHhhcccc--ccCCCCcEEEEcCccccC
Q 043990 262 IKKWVGG-RVQLIALCEST-RDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKF--SCSESCDLLICDEAHRLK 332 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~-r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~--~~~~~~~lVIlDEAH~lK 332 (911)
+.+++.. ...+..+.++. .......+. ..++|+|+|++.+....... .....+++||+||||++-
T Consensus 146 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~ 214 (262)
T 3ly5_A 146 LKELMTHHVHTYGLIMGGSNRSAEAQKLG------NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 214 (262)
T ss_dssp HHHHTTTCCSCEEEECSSSCHHHHHHHHH------HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHH
T ss_pred HHHHHhhcCceEEEEECCCCHHHHHHHhc------CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHh
Confidence 9999764 33343344333 222222111 23579999999985443221 124568999999999973
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.22 E-value=4.5e-11 Score=126.24 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=91.2
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCC-CCCCCCceEEEEeCc-hhhHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGF-DGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~-~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
.++|||.+++..++. .+.+|+..+||+|||+.++..+...+.... .......++|||||+ .|+.||.+
T Consensus 51 ~~~~~Q~~~i~~~~~----------g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 120 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----------GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQ 120 (242)
T ss_dssp SCCHHHHHHHHHHHH----------TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----------CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHH
Confidence 478999999998864 246799999999999997766655544321 111224579999998 67899999
Q ss_pred HHHHHhCC-CeEEEEecCCcch-hhhccCcccCCCCCCccEEEEehHHHHhhccc-cccCCCCcEEEEcCccccCC
Q 043990 261 EIKKWVGG-RVQLIALCESTRD-DVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK-FSCSESCDLLICDEAHRLKN 333 (911)
Q Consensus 261 Ei~k~~~~-~~~v~~~~~~~r~-~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~-~~~~~~~~lVIlDEAH~lKN 333 (911)
.+.++... .+.+..+.++... .....+. ..++|+|+|++.+...... ......+++||+||||++-.
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 190 (242)
T 3fe2_A 121 VAAEYCRACRLKSTCIYGGAPKGPQIRDLE------RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 190 (242)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHH------HCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHH
T ss_pred HHHHHHhhcCceEEEEECCCChHHHHHHhc------CCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhh
Confidence 99988643 3455555544332 2211111 2367999999988544321 11245789999999999854
No 89
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.15 E-value=3.2e-10 Score=137.02 Aligned_cols=125 Identities=11% Similarity=0.098 Sum_probs=106.8
Q ss_pred chHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecC
Q 043990 518 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSK 597 (911)
Q Consensus 518 S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStk 597 (911)
.+++..|...|..... .+.++|||++....++.|...|...|+++..++|.++..+|.+++++|+.+... +|++|.
T Consensus 428 ~~~~~~Ll~~l~~~~~-~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~ 503 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIE-RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGIN 503 (661)
T ss_dssp TTHHHHHHHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESC
T ss_pred cchHHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecc
Confidence 4555555555555443 478999999999999999999999999999999999999999999999975544 899999
Q ss_pred CcccccCCCCCCEEEEeCC-----CCCcchHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 043990 598 AGGCGLNLIGGNRLVLFDP-----DWNPANDKQAAARVWRDGQKKRVFIYRFLSTGT 649 (911)
Q Consensus 598 agg~GLNL~~An~VIl~Dp-----~WNPa~~~QAigR~~RiGQkk~V~VyrLi~~gT 649 (911)
++++|+|++.++.||++|. ++++..+.|++||++|. +.-.++.|+...+
T Consensus 504 ~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 504 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKIT 557 (661)
T ss_dssp CCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCC
T ss_pred hhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCC
Confidence 9999999999999999998 89999999999999997 3445666777665
No 90
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.04 E-value=1.2e-09 Score=119.35 Aligned_cols=130 Identities=17% Similarity=0.130 Sum_probs=87.8
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~ 260 (911)
..++|+|.+++..++. ...+.+|+..++|+|||+..+..+...+... ....++|||||+ .|+.|+.+
T Consensus 113 ~~pt~iQ~~ai~~il~--------~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~----~~~~~~lil~PtreLa~Q~~~ 180 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----NKYPQCLCLSPTYELALQTGK 180 (300)
T ss_dssp CSCCHHHHHHHHHHTS--------SSCCCEEEECCTTSSHHHHHHHHHHHHCCTT----SCSCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--------CCCCeEEEECCCCCCccHHHHHHHHHhhhcc----CCCceEEEEcCcHHHHHHHHH
Confidence 3578999999988742 1235789999999999998765554443222 112369999998 67789999
Q ss_pred HHHHHhCC--CeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccc--cccCCCCcEEEEcCcccc
Q 043990 261 EIKKWVGG--RVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSK--FSCSESCDLLICDEAHRL 331 (911)
Q Consensus 261 Ei~k~~~~--~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~--~~~~~~~~lVIlDEAH~l 331 (911)
.+.++... .+.+....++...... .....+|+|+|++.+...... ......+.+||+||||++
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l 247 (300)
T 3fmo_B 181 VIEQMGKFYPELKLAYAVRGNKLERG--------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (300)
T ss_dssp HHHHHTTTSTTCCEEEESTTCCCCTT--------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHH
T ss_pred HHHHHHhhCCCcEEEEEeCCccHhhh--------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHH
Confidence 99888642 3445444443322111 023468999999998654422 222356889999999997
No 91
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.98 E-value=4.5e-08 Score=117.90 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh----HHHHH
Q 043990 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV----SNWEA 260 (911)
Q Consensus 185 rphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl----~qW~~ 260 (911)
+|-|..|+.-++. |-|....||.|||+++...++.....| ..++||||+..+ ..|..
T Consensus 81 t~VQ~~~ip~Llq------------G~IaeakTGeGKTLvf~Lp~~L~aL~G-------~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 81 FDVQLIGGAVLHE------------GKIAEMKTGEGKTLVATLAVALNALTG-------KGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp CHHHHHHHHHHHT------------TSEEECCSTHHHHHHHHHHHHHHHTTC-------SCCEEEESSHHHHHHHHHHHH
T ss_pred cHHHHhhcccccC------------CceeeccCCCchHHHHHHHHHHHHHhC-------CCEEEEeCCHHHHHHHHHHHH
Confidence 4889999987742 338889999999998766654322222 358999999655 45777
Q ss_pred HHHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHH-----hhc----cccccCC---CCcEEEEcCc
Q 043990 261 EIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFR-----MHS----SKFSCSE---SCDLLICDEA 328 (911)
Q Consensus 261 Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~-----~~~----~~~~~~~---~~~lVIlDEA 328 (911)
.+.++++ +.+..+.++......... ...+|++.|...|. ... ..+. .. .+.++|+||+
T Consensus 142 ~l~~~lG--Lsv~~i~Gg~~~~~r~~a-------y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~-~r~d~~l~~lIIDEa 211 (997)
T 2ipc_A 142 PVYRGLG--LSVGVIQHASTPAERRKA-------YLADVTYVTNSELGFDYLRDNMAISPDQLV-LRHDHPLHYAIIDEV 211 (997)
T ss_dssp HHHHTTT--CCEEECCTTCCHHHHHHH-------HTSSEEEEEHHHHHHHHHHHTSCSSTTTCC-SCSSSSSCEEEETTH
T ss_pred HHHHhcC--CeEEEEeCCCCHHHHHHH-------cCCCEEEECchhhhhHHHHHhhhcchhhcc-cccCCCcceEEEech
Confidence 7777776 455555554433222111 13589999998873 221 0111 23 6889999999
Q ss_pred cccC
Q 043990 329 HRLK 332 (911)
Q Consensus 329 H~lK 332 (911)
|++-
T Consensus 212 DsmL 215 (997)
T 2ipc_A 212 DSIL 215 (997)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9874
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.54 E-value=2.9e-07 Score=109.03 Aligned_cols=137 Identities=18% Similarity=0.128 Sum_probs=86.8
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
.+||||.+.+..+++.+. ..+.+|+...||+|||+..+..+.. . ..++||++|+ .|..||.++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~------~~~~~~~~a~TGtGKT~~~l~p~l~---~-------~~~v~i~~pt~~l~~q~~~~ 66 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLR------NNFLVALNAPTGSGKTLFSLLVSLE---V-------KPKVLFVVRTHNEFYPIYRD 66 (551)
T ss_dssp SCCHHHHHHHHHHHHHHH------TTCEEEEECCTTSSHHHHHHHHHHH---H-------CSEEEEEESSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH------cCCcEEEECCCCccHHHHHHHHHHh---C-------CCeEEEEcCCHHHHHHHHHH
Confidence 478999998887766432 2245688899999999987766554 1 3489999998 677899999
Q ss_pred HHHHhCC-CeEEEEecCCcchhhhc------------cCcccCC----------------------------------CC
Q 043990 262 IKKWVGG-RVQLIALCESTRDDVVS------------GIDSFTD----------------------------------PC 294 (911)
Q Consensus 262 i~k~~~~-~~~v~~~~~~~r~~~~~------------~~~~~~~----------------------------------~~ 294 (911)
+.++... .+++..+.+...--... ....|.. ..
T Consensus 67 ~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 67 LTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp HTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 9876432 35555554432110000 0000000 01
Q ss_pred CCccEEEEehHHHHhhcc--ccccCCCCcEEEEcCccccCCccc
Q 043990 295 SSLQVLIVSYETFRMHSS--KFSCSESCDLLICDEAHRLKNDQT 336 (911)
Q Consensus 295 ~~~~VvI~Sye~l~~~~~--~~~~~~~~~lVIlDEAH~lKN~~s 336 (911)
...+|||++|..+..... .+.......+||+||||+|-+ -.
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~ 189 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VN 189 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HH
Confidence 245899999999854421 121123567899999999988 44
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.44 E-value=5.7e-07 Score=94.28 Aligned_cols=127 Identities=14% Similarity=0.088 Sum_probs=78.8
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh-hHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL-VSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL-l~qW~~E 261 (911)
.+++||.+++..+.. ..-+++..++|+|||.+...++......... .....+++++|+.. ..|..+.
T Consensus 61 p~~~~q~~~i~~i~~----------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 61 PVKKFESEILEAISQ----------NSVVIIRGATGCGKTTQVPQFILDDFIQNDR--AAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp GGGGGHHHHHHHHHH----------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--GGGCEEEEEESSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc----------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--CCceEEEEeccchHHHHHHHHH
Confidence 478999999988854 2456889999999997766555543332211 11237899999854 4667777
Q ss_pred HHHHhCCCeEEEEecCCcchhhhccCcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCcccc
Q 043990 262 IKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331 (911)
Q Consensus 262 i~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~l 331 (911)
+.+.++..+.....+ ..+.. .. ......+|+|+|++.+...... ....+++||+||||+.
T Consensus 129 ~~~~~~~~~~~~~g~-~~~~~--~~-----~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 129 VAFERGEEPGKSCGY-SVRFE--SI-----LPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHER 188 (235)
T ss_dssp HHHTTTCCTTSSEEE-EETTE--EE-----CCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSC
T ss_pred HHHHhccccCceEEE-eechh--hc-----cCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccC
Confidence 777665321100000 00000 00 0113467999999988665443 2467899999999973
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.94 E-value=1.5e-05 Score=95.45 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=57.9
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAE 261 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~E 261 (911)
..||+|++.+.-+++.+. ..+.+|+..+||+|||+..+..+...+... ..+++|++|+ ++..|+.++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~------~~~~~~~~apTGtGKT~a~l~p~l~~~~~~------~~kvli~t~T~~l~~Qi~~e 70 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQ------KSYGVALESPTGSGKTIMALKSALQYSSER------KLKVLYLVRTNSQEEQVIKE 70 (620)
T ss_dssp --CHHHHHHHHHHHHHHH------HSSEEEEECCTTSCHHHHHHHHHHHHHHHH------TCEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH------cCCCEEEECCCCCCHHHHHHHHHHHhhhhc------CCeEEEECCCHHHHHHHHHH
Confidence 358999999887776442 134568899999999999887665554331 2489999998 678999999
Q ss_pred HHHHhC-CCeEEEEec
Q 043990 262 IKKWVG-GRVQLIALC 276 (911)
Q Consensus 262 i~k~~~-~~~~v~~~~ 276 (911)
+.++.. ..+++..+.
T Consensus 71 l~~l~~~~~~~~~~l~ 86 (620)
T 4a15_A 71 LRSLSSTMKIRAIPMQ 86 (620)
T ss_dssp HHHHHHHSCCCEEECC
T ss_pred HHHHhhccCeEEEEEE
Confidence 988753 134444443
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.10 E-value=0.0012 Score=79.38 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=53.1
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh-hHHHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL-VSNWE 259 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL-l~qW~ 259 (911)
...|-+.|++||..++.. ..=+|+.-++|+|||.+.+.+|..++.++ .++||++|+.. +.+-.
T Consensus 187 ~~~LN~~Q~~AV~~al~~---------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-------~~ILv~a~TN~AvD~i~ 250 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALSQ---------KELAIIHGPPGTGKTTTVVEIILQAVKQG-------LKVLCCAPSNIAVDNLV 250 (646)
T ss_dssp STTCCHHHHHHHHHHHHC---------SSEEEEECCTTSCHHHHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcC---------CCceEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEcCchHHHHHHH
Confidence 356889999999998641 12357888999999999999999988765 47999999954 56666
Q ss_pred HHHHHH
Q 043990 260 AEIKKW 265 (911)
Q Consensus 260 ~Ei~k~ 265 (911)
..+...
T Consensus 251 erL~~~ 256 (646)
T 4b3f_X 251 ERLALC 256 (646)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 666543
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.72 E-value=0.0048 Score=73.84 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=49.0
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~ 260 (911)
..|-+.|+++|..++. ..-+++.-..|+|||.++..++..+.... ..++||++|+... .+-..
T Consensus 179 ~~ln~~Q~~av~~~l~----------~~~~li~GppGTGKT~~~~~~i~~l~~~~------~~~ilv~a~tn~A~~~l~~ 242 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----------RPLSLIQGPPGTGKTVTSATIVYHLARQG------NGPVLVCAPSNIAVDQLTE 242 (624)
T ss_dssp CCCCHHHHHHHHHHHT----------CSEEEEECCTTSCHHHHHHHHHHHHHTSS------SCCEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc----------CCCeEEECCCCCCHHHHHHHHHHHHHHcC------CCeEEEEeCcHHHHHHHHH
Confidence 4578999999988752 12457788899999999998888776532 3589999999654 44444
Q ss_pred HHHH
Q 043990 261 EIKK 264 (911)
Q Consensus 261 Ei~k 264 (911)
.+.+
T Consensus 243 ~l~~ 246 (624)
T 2gk6_A 243 KIHQ 246 (624)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0067 Score=74.52 Aligned_cols=68 Identities=18% Similarity=0.329 Sum_probs=49.8
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~ 260 (911)
..|-+.|+++|..++. ..-.++--..|+|||.++..++..+.... ..++||++|+... .+-..
T Consensus 359 ~~Ln~~Q~~Av~~~l~----------~~~~lI~GppGTGKT~~i~~~i~~l~~~~------~~~ILv~a~tn~A~d~l~~ 422 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----------RPLSLIQGPPGTGKTVTSATIVYHLSKIH------KDRILVCAPSNVAVDHLAA 422 (802)
T ss_dssp CCCCHHHHHHHHHHTT----------CSEEEEECSTTSSHHHHHHHHHHHHHHHH------CCCEEEEESSHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhc----------CCCEEEECCCCCCHHHHHHHHHHHHHhCC------CCeEEEEcCcHHHHHHHHH
Confidence 4688999999988742 12357778899999999988888776531 2589999999654 55555
Q ss_pred HHHHH
Q 043990 261 EIKKW 265 (911)
Q Consensus 261 Ei~k~ 265 (911)
.+.+.
T Consensus 423 rL~~~ 427 (802)
T 2xzl_A 423 KLRDL 427 (802)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 56553
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.20 E-value=0.014 Score=71.65 Aligned_cols=66 Identities=21% Similarity=0.324 Sum_probs=48.2
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~ 260 (911)
..|-+.|+++|..++. ..-.++.-..|+|||.+...++..+.... ..++||++|+... .+-..
T Consensus 355 ~~Ln~~Q~~Av~~~l~----------~~~~lI~GppGTGKT~ti~~~i~~l~~~~------~~~ilv~a~tn~A~~~l~~ 418 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----------RPLSLIQGPPGTGKTVTSATIVYHLARQG------NGPVLVCAPSNIAVDQLTE 418 (800)
T ss_dssp CCCCHHHHHHHHHHHT----------SSEEEEECCTTSCHHHHHHHHHHHHHTTC------SSCEEEEESSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhcc----------CCeEEEEcCCCCCHHHHHHHHHHHHHHcC------CCcEEEEcCcHHHHHHHHH
Confidence 4688999999998752 12357788899999999988888776532 3589999999654 44444
Q ss_pred HHH
Q 043990 261 EIK 263 (911)
Q Consensus 261 Ei~ 263 (911)
.+.
T Consensus 419 ~l~ 421 (800)
T 2wjy_A 419 KIH 421 (800)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.09 E-value=0.025 Score=64.93 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=47.5
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhH
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVS 256 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~ 256 (911)
.|-+-|++++..+...+. .+.+-.+|--..|+|||..+.+++..+...+. .++++++|+....
T Consensus 25 ~Ln~~Q~~av~~~~~~i~-----~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~------~~il~~a~T~~Aa 87 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIK-----EKKHHVTINGPAGTGATTLTKFIIEALISTGE------TGIILAAPTHAAK 87 (459)
T ss_dssp CCCHHHHHHHHHHHHHHH-----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC------CCEEEEESSHHHH
T ss_pred cCCHHHHHHHHHHHHHHh-----cCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC------ceEEEecCcHHHH
Confidence 466999999998866432 12235677888999999999888888877652 4799999996653
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.95 E-value=0.039 Score=65.17 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=47.9
Q ss_pred hccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHH
Q 043990 181 VRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEA 260 (911)
Q Consensus 181 ~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~ 260 (911)
...|-+.|++++..+.. .+-+++.-..|+|||.++.+++..+...+ .++++++|+.-......
T Consensus 187 ~~~L~~~Q~~Av~~~~~----------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-------~~Vl~~ApT~~Aa~~L~ 249 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----------HRLVVLTGGPGTGKSTTTKAVADLAESLG-------LEVGLCAPTGKAARRLG 249 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----------CSEEEEECCTTSCHHHHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh----------CCEEEEEcCCCCCHHHHHHHHHHHHHhcC-------CeEEEecCcHHHHHHhH
Confidence 34577999999998742 23457788899999998888887766543 47999999977665544
Q ss_pred H
Q 043990 261 E 261 (911)
Q Consensus 261 E 261 (911)
+
T Consensus 250 e 250 (574)
T 3e1s_A 250 E 250 (574)
T ss_dssp H
T ss_pred h
Confidence 4
No 101
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.37 E-value=0.04 Score=56.41 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=28.1
Q ss_pred EEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043990 213 LADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS 253 (911)
Q Consensus 213 LADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s 253 (911)
+.-+||.|||..++.++..+..++ .++||+.|.-
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~g-------~kVli~k~~~ 66 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFAK-------QHAIVFKPCI 66 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTT-------CCEEEEECC-
T ss_pred EECCCCCcHHHHHHHHHHHHHHCC-------CEEEEEEecc
Confidence 578999999999999988887665 5799999874
No 102
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.99 E-value=0.044 Score=65.26 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhH-HHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVS-NWEAEIKK 264 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~-qW~~Ei~k 264 (911)
+.|++++..++. .+-+++.-.+|+|||.++..++..+...... ...++++++|+.-.. +-.+.+.+
T Consensus 152 ~~Q~~Ai~~~l~----------~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~---~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 152 NWQKVAAAVALT----------RRISVISGGPGTGKTTTVAKLLAALIQMADG---ERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CHHHHHHHHHHT----------BSEEEEECCTTSTHHHHHHHHHHHHHHTCSS---CCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhc----------CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc---CCCeEEEEeCChhHHHHHHHHHHH
Confidence 779999987752 2346788899999998877777666543111 124799999996554 44444444
Q ss_pred H
Q 043990 265 W 265 (911)
Q Consensus 265 ~ 265 (911)
+
T Consensus 219 ~ 219 (608)
T 1w36_D 219 A 219 (608)
T ss_dssp H
T ss_pred H
Confidence 3
No 103
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.31 E-value=0.14 Score=52.76 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=27.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
++.-+||.|||..++.++..+...+ .+++++.|.
T Consensus 16 litG~mGsGKTT~ll~~~~r~~~~g-------~kVli~~~~ 49 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRLHRLEYAD-------VKYLVFKPK 49 (223)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT-------CCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcC-------CEEEEEEec
Confidence 5578999999999999988887655 368888775
No 104
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.09 E-value=0.1 Score=52.48 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=28.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
++.-+||.|||..++.++..+..++ .+++|+.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~~g-------~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKIAK-------QKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC-------CEEEEEEec
Confidence 5567899999999999888876654 478999987
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.46 E-value=0.11 Score=51.66 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=27.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
++.-+||.|||..++.++..+...+ .+++++.|.
T Consensus 7 vi~G~~gsGKTT~ll~~~~~~~~~g-------~~v~~~~~~ 40 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVEIYKLGK-------KKVAVFKPK 40 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-------CEEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEeec
Confidence 5677899999999988888776554 468888887
No 106
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=92.63 E-value=0.27 Score=58.57 Aligned_cols=112 Identities=9% Similarity=0.085 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEec--CCcc
Q 043990 523 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSS--KAGG 600 (911)
Q Consensus 523 ~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlSt--kagg 600 (911)
.+.+.|..+....+..++||...-..++.+...+. .+..- ...+++...|.+++++|. +... +|+++ ....
T Consensus 435 ~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~---vL~~v~~gsf~ 507 (620)
T 4a15_A 435 RMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHG---TIFAVSGGRLS 507 (620)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCC---EEEEETTSCC-
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCc---EEEEEecCcee
Confidence 34444444433235567777777778888777665 23333 444455568999999999 3333 56665 5889
Q ss_pred cccCCCC--CCEEEEeCCCCCc-------------------c----------hHHHHHHhhhhcCCcccEEE
Q 043990 601 CGLNLIG--GNRLVLFDPDWNP-------------------A----------NDKQAAARVWRDGQKKRVFI 641 (911)
Q Consensus 601 ~GLNL~~--An~VIl~Dp~WNP-------------------a----------~~~QAigR~~RiGQkk~V~V 641 (911)
+|+|+++ +..||+.-.|+-+ - ...|++||+-|--..+-|.+
T Consensus 508 EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 508 EGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp -------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred ccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEE
Confidence 9999985 6788888766532 1 12589999888665555544
No 107
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=92.40 E-value=1.2 Score=49.51 Aligned_cols=70 Identities=20% Similarity=0.135 Sum_probs=46.5
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh-hHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL-VSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL-l~qW~~ 260 (911)
-.|.|||+..+..+.. .+-+++.-.-+.|||..+.+++....... ....+++++|+.- ...+-+
T Consensus 162 ~~L~p~Qk~il~~l~~----------~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-----~g~~v~~vA~t~~qA~~vf~ 226 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----------KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----KDKAVGILAHKGSMSAEVLD 226 (385)
T ss_dssp CCCCHHHHHHHHHHHH----------SSEEEEEECSSSCHHHHHHHHHHHHHHSS-----SSCEEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhcc----------CcEEEEEEcCcCChhHHHHHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHH
Confidence 3688999998776632 12357777789999998777666544332 1347999999843 333446
Q ss_pred HHHHHh
Q 043990 261 EIKKWV 266 (911)
Q Consensus 261 Ei~k~~ 266 (911)
++..++
T Consensus 227 ~i~~mi 232 (385)
T 2o0j_A 227 RTKQAI 232 (385)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776664
No 108
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.86 E-value=0.29 Score=55.50 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHHHHHhCCCeEEEEecCCcchhhhcc
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSG 286 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~ 286 (911)
.+-.++.-..|+|||.....++. .++.|||+|+ .+...|.+.+.+. +. .
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~------------~~~~lVlTpT~~aa~~l~~kl~~~-~~----------~------- 210 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN------------FEEDLILVPGRQAAEMIRRRANAS-GI----------I------- 210 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC------------TTTCEEEESCHHHHHHHHHHHTTT-SC----------C-------
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc------------cCCeEEEeCCHHHHHHHHHHhhhc-Cc----------c-------
Confidence 34456788899999987665541 1357999998 5668888877432 00 0
Q ss_pred CcccCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcCcccc
Q 043990 287 IDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331 (911)
Q Consensus 287 ~~~~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~l 331 (911)
.....-+.|++.+........ ...+++||||||..+
T Consensus 211 --------~~~~~~V~T~dsfL~~~~~~~-~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 --------VATKDNVRTVDSFLMNYGKGA-RCQFKRLFIDEGLML 246 (446)
T ss_dssp --------CCCTTTEEEHHHHHHTTTSSC-CCCCSEEEEETGGGS
T ss_pred --------ccccceEEEeHHhhcCCCCCC-CCcCCEEEEeCcccC
Confidence 000133678888765443221 234899999999977
No 109
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.86 E-value=0.33 Score=49.65 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=25.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS 253 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s 253 (911)
++.-+||.|||...+-.+..+...+ .+++|+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~g-------~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYAK-------QKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT-------CCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC-------CceEEEEecc
Confidence 4567899999988887776665544 4688888864
No 110
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.47 E-value=0.19 Score=51.95 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=27.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
++.-+||.|||-.+|..+..+...+ .+++|+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~~g-------~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQIAQ-------YKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTT-------CCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC-------CeEEEEeec
Confidence 4567899999999998888776554 578888876
No 111
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.14 E-value=0.45 Score=57.07 Aligned_cols=69 Identities=17% Similarity=0.296 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc-hhhHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT-SLVSNWEAEIKK 264 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~-sLl~qW~~Ei~k 264 (911)
.+|..++.-+.+.+. .+.+...|.--+|+|||+++..++... .+|+|||+|. .+..+|..|+..
T Consensus 15 ~~Q~~~i~~l~~~~~-----~~~~~~~l~g~~gs~k~~~~a~~~~~~----------~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 15 GDQPKAIEKLVKGIQ-----EGKKHQTLLGATGTGKTFTVSNLIKEV----------NKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp TTHHHHHHHHHHHHH-----TTCSEEEEEECTTSCHHHHHHHHHHHH----------CCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-----cCCCcEEEECcCCcHHHHHHHHHHHHh----------CCCEEEEECCHHHHHHHHHHHHH
Confidence 789999987765431 121223566779999999988777553 2479999998 677999999999
Q ss_pred HhCCC
Q 043990 265 WVGGR 269 (911)
Q Consensus 265 ~~~~~ 269 (911)
|+|..
T Consensus 80 ~~~~~ 84 (661)
T 2d7d_A 80 FFPNN 84 (661)
T ss_dssp HCTTS
T ss_pred HcCCC
Confidence 98863
No 112
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.30 E-value=0.39 Score=52.40 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
++|+|.+.++.+...+.. ....++.++.-+.|.|||..+.+++..+....
T Consensus 3 ~~pw~~~~~~~l~~~i~~---~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQA---GRGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CCGGGHHHHHHHHHHHHT---TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred CCCchHHHHHHHHHHHHc---CCcceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 578999998887765421 22345678899999999999999998876543
No 113
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.68 E-value=0.72 Score=44.54 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457788999999999998888777654
No 114
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=89.60 E-value=1.8 Score=51.14 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=47.4
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch-hhHHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS-LVSNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s-Ll~qW~~ 260 (911)
-.|.|||+..+..+.. .+-.++.-.-|.|||..+.+++...+... | ..+++++.|+. ....+..
T Consensus 162 ~~l~p~Q~~i~~~l~~----------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~----~-~~~i~~va~t~~qA~~~~~ 226 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSS----------KRMTVCNLSRQLGKTTVVAIFLAHFVCFN----K-DKAVGILAHKGSMSAEVLD 226 (592)
T ss_dssp CCCCHHHHHHHHHHHH----------CSEEEEEECSSSCHHHHHHHHHHHHHHTS----S-SCEEEEEESSHHHHHHHHH
T ss_pred CcCCHHHHHHHHhhcc----------ccEEEEEEcCccChHHHHHHHHHHHHHhC----C-CCeEEEEECCHHHHHHHHH
Confidence 3688999987776632 12356777899999998766655544433 1 34799999983 3344556
Q ss_pred HHHHHhC
Q 043990 261 EIKKWVG 267 (911)
Q Consensus 261 Ei~k~~~ 267 (911)
.+..++.
T Consensus 227 ~i~~~i~ 233 (592)
T 3cpe_A 227 RTKQAIE 233 (592)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7777764
No 115
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.00 E-value=0.76 Score=44.41 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=23.1
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467899999999999998888877655
No 116
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=88.24 E-value=1.5 Score=52.10 Aligned_cols=73 Identities=22% Similarity=0.160 Sum_probs=52.3
Q ss_pred hhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh-hHHH
Q 043990 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL-VSNW 258 (911)
Q Consensus 180 l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL-l~qW 258 (911)
+...|-|.|+++|... .+-+++--..|+|||.+.+.-+..++..+. . ...++|+|+++.- ..+-
T Consensus 6 ~~~~Ln~~Q~~av~~~------------~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~--~-~~~~iL~ltft~~aa~e~ 70 (647)
T 3lfu_A 6 LLDSLNDKQREAVAAP------------RSNLLVLAGAGSGKTRVLVHRIAWLMSVEN--C-SPYSIMAVTFTNKAAAEM 70 (647)
T ss_dssp HHTTCCHHHHHHHTCC------------SSCEEEEECTTSCHHHHHHHHHHHHHHTSC--C-CGGGEEEEESSHHHHHHH
T ss_pred hhhcCCHHHHHHHhCC------------CCCEEEEECCCCCHHHHHHHHHHHHHHhCC--C-ChhhEEEEeccHHHHHHH
Confidence 4567889999999621 123456667999999999999988887641 1 1368999999854 5666
Q ss_pred HHHHHHHhC
Q 043990 259 EAEIKKWVG 267 (911)
Q Consensus 259 ~~Ei~k~~~ 267 (911)
.+.+.+.++
T Consensus 71 ~~rl~~~~~ 79 (647)
T 3lfu_A 71 RHRIGQLMG 79 (647)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 667777665
No 117
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.59 E-value=0.45 Score=50.80 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=24.3
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
...+.+|.-+.|+|||..+-++...+...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 344689999999999999988887776554
No 118
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=82.93 E-value=0.49 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~l 232 (911)
.+|.+|.-+.|+|||..+-++...+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4688999999999999888876653
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.84 E-value=1.7 Score=43.85 Aligned_cols=29 Identities=17% Similarity=0.009 Sum_probs=23.3
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
..++.+|.-+.|+|||..+-+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45678899999999999888887766544
No 120
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.44 E-value=0.5 Score=49.86 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=21.0
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ 231 (911)
...+|.+|.-+.|+|||..+-++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34578899999999999988777654
No 121
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.00 E-value=1.7 Score=49.50 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=32.9
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHH
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAE 261 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~E 261 (911)
.=++|+-..|+|||.-++.++..+.... ..+++++....-..++...
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~------g~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKT------NENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHS------SCCEEEEESSSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHH
Confidence 3468899999999999999888776532 2368888765433444443
No 122
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=81.35 E-value=0.54 Score=51.79 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=21.9
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~l 232 (911)
..+|.+|.-+.|+|||..+-+++..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34688999999999999988887665
No 123
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=80.08 E-value=7.7 Score=41.92 Aligned_cols=47 Identities=6% Similarity=0.001 Sum_probs=31.7
Q ss_pred hHHHHHHHH-HHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 185 RPHQREGVQ-FMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 185 rphQ~egV~-~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
|.-|...+. ++..+ +......+.+|.-.+|+|||.++-.++..+...
T Consensus 25 Re~E~~~i~~~L~~~----i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 25 QVEDFTRIFLPIYDS----LMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHH----HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH----hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555555 33332 223445567789999999999999998887654
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=79.82 E-value=4.3 Score=39.90 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=21.5
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.+.+|.-+.|.|||..+-++...+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 458899999999999888877666443
No 125
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=79.66 E-value=0.99 Score=50.22 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=27.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
.++.+|.-+.|+|||..+-++...+ ..+++.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~----------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES----------NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh----------cCcEEEeeHHHhhccc
Confidence 4688999999999999887775442 2356666666655444
No 126
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=78.30 E-value=1.7 Score=49.25 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=34.4
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIK 263 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~ 263 (911)
=++|+-.+|+|||.-++.++....... ..+++++....-..++...+.
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~------g~~vl~~slE~~~~~l~~R~~ 249 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKE------GVGVGIYSLEMPAAQLTLRMM 249 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT------CCCEEEEESSSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHH
Confidence 458899999999999999888776532 246888877644555555443
No 127
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=77.71 E-value=0.76 Score=49.87 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=21.5
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~l 232 (911)
..+|.+|.-+.|+|||..+-+++..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34789999999999999888877653
No 128
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=76.73 E-value=4.5 Score=48.33 Aligned_cols=68 Identities=24% Similarity=0.384 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhc-CCCCCCCCceEEEEeCchh-hHHHHHH
Q 043990 184 LRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQ-GFDGKPMVKKAIIVTPTSL-VSNWEAE 261 (911)
Q Consensus 184 LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~-g~~~~p~~~~~LIV~P~sL-l~qW~~E 261 (911)
|-|.|+++|... .+-+++-...|+|||.+.+.-+..++.. +. ...++|+|+.+.- ...-.+.
T Consensus 3 L~~~Q~~av~~~------------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~----~~~~IL~lTfT~~Aa~em~~R 66 (673)
T 1uaa_A 3 LNPGQQQAVEFV------------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKER 66 (673)
T ss_dssp CCHHHHHHHHCC------------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC----CGGGEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHhCC------------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHH
Confidence 568999998631 1234566789999999999888888765 31 1368999998854 4555666
Q ss_pred HHHHhC
Q 043990 262 IKKWVG 267 (911)
Q Consensus 262 i~k~~~ 267 (911)
+.+.++
T Consensus 67 l~~~l~ 72 (673)
T 1uaa_A 67 VGQTLG 72 (673)
T ss_dssp HHHHSC
T ss_pred HHHHcC
Confidence 766654
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=76.72 E-value=5.4 Score=43.37 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=23.1
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
...++.+|.-+.|+|||..+-.++..+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34567889999999999988888776644
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.07 E-value=2.9 Score=45.75 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
..+.+.+..++... ......+..+|.-+.|+|||..+-+++..+...
T Consensus 26 ~~~~~~l~~~l~~~---~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 26 EDILRDAAIAIRYF---VKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp HHHHHHHHHHHHHH---HTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 55555554333321 112334568889999999999988887766443
No 131
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=76.03 E-value=11 Score=40.07 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=17.6
Q ss_pred CceEEEcCCCchHHHHHHHHHHHH
Q 043990 209 HGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~l 232 (911)
+..++.-+.|+|||..+-++...+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh
Confidence 444666779999999887776543
No 132
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=74.98 E-value=7.5 Score=46.92 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=50.8
Q ss_pred hhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHH
Q 043990 180 LVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNW 258 (911)
Q Consensus 180 l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW 258 (911)
+...|-|.|+++|... .+-+++-...|+|||.+.+.-+..++.... . ....+|+|+.+.-. ..-
T Consensus 8 ~l~~Ln~~Q~~av~~~------------~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~--~-~p~~IL~vTFTnkAA~Em 72 (724)
T 1pjr_A 8 LLAHLNKEQQEAVRTT------------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH--V-APWNILAITFTNKAAREM 72 (724)
T ss_dssp HHTTSCHHHHHHHHCC------------SSCEEEEECTTSCHHHHHHHHHHHHHHTTC--C-CGGGEEEEESSHHHHHHH
T ss_pred HHhhCCHHHHHHHhCC------------CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC--C-CHHHeEEEeccHHHHHHH
Confidence 4456889999998631 133466678999999999998888887531 1 23689999998544 445
Q ss_pred HHHHHHHhC
Q 043990 259 EAEIKKWVG 267 (911)
Q Consensus 259 ~~Ei~k~~~ 267 (911)
.+.+.+.++
T Consensus 73 ~~Rl~~~l~ 81 (724)
T 1pjr_A 73 RERVQSLLG 81 (724)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHhc
Confidence 555666554
No 133
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.29 E-value=1.5 Score=45.23 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=21.1
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~l 232 (911)
..+|.+|.-+.|+|||..+-++...+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999888776654
No 134
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=71.66 E-value=14 Score=39.47 Aligned_cols=40 Identities=5% Similarity=-0.066 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHH
Q 043990 188 QREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 188 Q~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ 231 (911)
|.+.+..+...+. ....+..|+.-+.|.|||-.+.+++..
T Consensus 2 ~~~~~~~L~~~i~----~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIE----KSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHH----TCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4445555544321 122456789999999999888887754
No 135
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=71.55 E-value=9 Score=37.65 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=22.5
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhc
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~ 235 (911)
.+.+|.-+.|+|||..+-++...+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 678899999999999988887776544
No 136
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.28 E-value=2.6 Score=47.15 Aligned_cols=50 Identities=32% Similarity=0.260 Sum_probs=38.8
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKW 265 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~ 265 (911)
...+|++|.-++|+|||+.|=+++..+ ..+++.|..+.++..|.-|-.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v~~s~l~sk~vGese~~ 229 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRVSGAELVQKYIGEGSRM 229 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEEEGGGGSCSSTTHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEEEhHHhhccccchHHHH
Confidence 456899999999999999998888764 34678888888887775554443
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=71.15 E-value=7.1 Score=37.74 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll 233 (911)
+.|.+++..+.+....+. .....+.+|.-+.|+|||..+-+++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFN-PEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHHHSCC-GGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 679999988876544322 22346778889999999998888877665
No 138
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=70.93 E-value=14 Score=41.63 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=20.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g 236 (911)
.+++-..|.|||-++..++..+...+
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45567899999999988888776654
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=70.76 E-value=14 Score=41.78 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=21.7
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
-.+++-..|.|||-++..++..+..+|
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 345677899999999999998887654
No 140
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=70.33 E-value=8.8 Score=37.63 Aligned_cols=75 Identities=24% Similarity=0.251 Sum_probs=45.6
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC--chhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCCCC
Q 043990 217 MGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP--TSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPC 294 (911)
Q Consensus 217 mGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P--~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~~~ 294 (911)
-|.|||..++.+...+...| .++|+|-- ..-+..|. ... .
T Consensus 11 gG~GKTt~a~~la~~la~~g-------~~vlliD~D~~~~~~~~~-------~~~------------------------~ 52 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRSG-------YNIAVVDTDPQMSLTNWS-------KAG------------------------K 52 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHH-------TTS------------------------C
T ss_pred CCccHHHHHHHHHHHHHHCC-------CeEEEEECCCCCCHHHHH-------hcC------------------------C
Confidence 48999999999999988765 35777753 33334443 210 0
Q ss_pred CCccEEEEehHHHHhhccccccCCCCcEEEEcCcccc
Q 043990 295 SSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRL 331 (911)
Q Consensus 295 ~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDEAH~l 331 (911)
...+++-...+.+......+. ..+|+||+|=.-.+
T Consensus 53 ~~~~~~~~~~~~l~~~l~~l~--~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 53 AAFDVFTAASEKDVYGIRKDL--ADYDFAIVDGAGSL 87 (206)
T ss_dssp CSSEEEECCSHHHHHTHHHHT--TTSSEEEEECCSSS
T ss_pred CCCcEEecCcHHHHHHHHHhc--CCCCEEEEECCCCC
Confidence 113344444455555444443 46899999966554
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=69.47 E-value=8.6 Score=41.84 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.2
Q ss_pred ceEEEcCCCchHHHHHHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~l 232 (911)
..+|.-+.|+|||..+-+++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999887776655
No 142
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=69.33 E-value=15 Score=44.58 Aligned_cols=98 Identities=11% Similarity=0.031 Sum_probs=67.9
Q ss_pred ccchHHHHHHH-HHHHHhhcCCCeEEEEEcchHHHHHHHHHH----HHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCce
Q 043990 516 ELSGKMHVLAR-LLGHLRQRTDDRIVLVSNYTQTLDLFAQLC----RERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEF 590 (911)
Q Consensus 516 ~~S~Kl~~L~~-LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L----~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~ 590 (911)
..|||..+..- ++..+. .+.+++|.+.....+.-+...+ ...|+++..++|+++..+|..+++...++..+
T Consensus 398 TGSGKTlvall~il~~l~--~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~-- 473 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID-- 473 (780)
T ss_dssp SSSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC--
T ss_pred CCCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC--
Confidence 34899765443 444443 3689999999887665555444 44489999999999999999999999876555
Q ss_pred EEEEecCCcccccCCCCCCEEEEeCCC
Q 043990 591 VFLLSSKAGGCGLNLIGGNRLVLFDPD 617 (911)
Q Consensus 591 v~LlStkagg~GLNL~~An~VIl~Dp~ 617 (911)
+++.+.......+++.....||+=+.+
T Consensus 474 IvVgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 474 VVIGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EEEECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EEEECHHHHhhhhhccCCceEEecccc
Confidence 444444445556677777777765444
No 143
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.33 E-value=2.5 Score=47.80 Aligned_cols=49 Identities=22% Similarity=0.195 Sum_probs=37.6
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKK 264 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k 264 (911)
...+|++|.-++|+|||+.|=+++..+ ..+++.|..+.++..|.-+-.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v~~s~l~~~~vGese~ 261 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT----------NATFLKLAAPQLVQMYIGEGAK 261 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGGCSSCSSHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEEehhhhhhcccchHHH
Confidence 456899999999999999988888765 3467888888887766544433
No 144
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.18 E-value=2.5 Score=47.86 Aligned_cols=49 Identities=24% Similarity=0.300 Sum_probs=37.1
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKK 264 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k 264 (911)
...+|++|.-++|+|||+.|-+++..+ ..+++.|..+.++..|.-+-.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~~s~l~sk~~Gese~ 261 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSPASGIVDKYIGESAR 261 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGTCCSSSSHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEehhhhccccchHHHH
Confidence 456899999999999999999888765 2367777777777666544433
No 145
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=66.66 E-value=2.3 Score=43.29 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=32.2
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
=.+++-++|+|||.-|+.+++.....+ ..+++++.-..-..+....+
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~------~~~v~~~s~E~~~~~~~~~~ 78 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEY------GEPGVFVTLEERARDLRREM 78 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH------CCCEEEEESSSCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhc------CCCceeecccCCHHHHHHHH
Confidence 358899999999999998887654432 24678887654444444444
No 146
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=66.61 E-value=11 Score=41.48 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=33.1
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
.-.+|+-+.|+|||..++.++......+ .++++|.......+|
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g-------~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAG-------GTCAFIDAEHALDPV 117 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCC-------CeEEEEECCCChhHH
Confidence 4568899999999999999988876553 367888776655555
No 147
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.89 E-value=3.7 Score=46.27 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=38.1
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKK 264 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k 264 (911)
...+|++|.-++|+|||+.|-+++..+ ..+++.|....++..|.-|-.+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v~~s~l~sk~vGesek 262 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRIVGSELIQKYLGDGPR 262 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEEESGGGCCSSSSHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEEEHHHhhhccCchHHH
Confidence 456899999999999999998888765 3467888888887777555444
No 148
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=64.80 E-value=12 Score=46.04 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.0
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
..++.+|.-+.|+|||..+-+++..+..
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3467899999999999988888877654
No 149
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.74 E-value=3.4 Score=46.58 Aligned_cols=47 Identities=23% Similarity=0.211 Sum_probs=35.6
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
...+|.+|.-++|+|||..|=+++..+ ..+++.|..+.++..|.-+-
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~~~~l~~~~~Ge~ 250 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVNGSEFVHKYLGEG 250 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEEGGGTCCSSCSHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEecchhhccccchh
Confidence 456899999999999999998888765 23677777777776654433
No 150
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=64.55 E-value=4.6 Score=43.45 Aligned_cols=48 Identities=8% Similarity=-0.059 Sum_probs=34.9
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKK 264 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k 264 (911)
=+||+-.+|.|||.-++.++.....++ .++|++.--.-..+....+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g-------~~vl~~slE~s~~~l~~R~~~ 117 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDND-------DVVNLHSLEMGKKENIKRLIV 117 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT-------CEEEEEESSSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcC-------CeEEEEECCCCHHHHHHHHHH
Confidence 468999999999999998887776543 478999876444454444443
No 151
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=64.44 E-value=27 Score=40.40 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCC-CCHHHHHHHHHhhcCCCCCceEEEEec--CC
Q 043990 522 HVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKNEFVFLLSS--KA 598 (911)
Q Consensus 522 ~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGs-ts~~~R~~iv~~Fn~~~~~~~v~LlSt--ka 598 (911)
..+.+.|..+....+.++|||...-..++.+.. ..+++ +...|. ++ +..+++.|+... + .+|+++ ..
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~-v~~q~~~~~---~~~~~~~~~~~~-~--~vl~~v~gg~ 448 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLP-KYVESEDSS---VEDLYSAISANN-K--VLIGSVGKGK 448 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSS-EEECCSSCC---HHHHHHHTTSSS-S--CEEEEESSCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCc-EEEcCCCCC---HHHHHHHHHhcC-C--eEEEEEecce
Confidence 445555555444345678888877777777765 23444 334443 34 466888996322 2 355555 68
Q ss_pred cccccCCC-----CCCEEEEeCCCCCc
Q 043990 599 GGCGLNLI-----GGNRLVLFDPDWNP 620 (911)
Q Consensus 599 gg~GLNL~-----~An~VIl~Dp~WNP 620 (911)
..+|+|++ .+..||+.-.|+-+
T Consensus 449 ~~EGiD~~d~~g~~l~~viI~~lPfp~ 475 (551)
T 3crv_A 449 LAEGIELRNNDRSLISDVVIVGIPYPP 475 (551)
T ss_dssp SCCSSCCEETTEESEEEEEEESCCCCC
T ss_pred ecccccccccCCcceeEEEEEcCCCCC
Confidence 99999999 37788888877633
No 152
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.46 E-value=3.5 Score=46.75 Aligned_cols=46 Identities=9% Similarity=-0.034 Sum_probs=34.4
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
=+||+-.+|.|||.-++.++.....++ .+++++.--.-..++...+
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g-------~~vl~fSlEms~~ql~~R~ 244 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDND-------DVVNLHSLEMGKKENIKRL 244 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTT-------CEEEEECSSSCTTHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcC-------CEEEEEECCCCHHHHHHHH
Confidence 468999999999999999998877653 4788888764444444443
No 153
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.59 E-value=3.6 Score=46.80 Aligned_cols=49 Identities=27% Similarity=0.224 Sum_probs=37.2
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKK 264 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k 264 (911)
...+|++|.-++|+|||+.|-+++..+ ..+++.|....++..|.-+-.+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs~s~L~sk~vGesek 289 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVIGSELVQKYVGEGAR 289 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGGCCCSSSHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEEhHHhhcccCCHHHH
Confidence 457899999999999999988888765 2367777777777666544433
No 154
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=62.57 E-value=2.2 Score=46.66 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=33.7
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
=.|||-.+|.|||.-++.++......+ .+++++..---..+....+
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g-------~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDD-------RGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT-------CEEEEEESSSCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcC-------CeEEEEeCCCCHHHHHHHH
Confidence 368899999999999999888776643 4789988764444444333
No 155
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=61.05 E-value=28 Score=38.31 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=65.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH---cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE---RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~---~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
..+||..+..-.+.... ..+.++||.+.....+.-+...+.. .|+++..++|+++..+|...+..+..+..+ ++
T Consensus 45 TGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~--Ii 121 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--IL 121 (414)
T ss_dssp SSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS--EE
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC--EE
Confidence 45899764333322222 2578999999999998888888887 588999999999998888888888764344 55
Q ss_pred EEecCCccc---ccCCCCCCEEEE
Q 043990 593 LLSSKAGGC---GLNLIGGNRLVL 613 (911)
Q Consensus 593 LlStkagg~---GLNL~~An~VIl 613 (911)
+.+....-. -+++...+.||+
T Consensus 122 v~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 122 VFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred EECHHHHHHHHHHhccccccEEEE
Confidence 655544321 144455665554
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=60.41 E-value=8.6 Score=42.06 Aligned_cols=42 Identities=12% Similarity=0.028 Sum_probs=31.0
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
-.+|+-+.|+|||..++.++......+ .+++++.-.....++
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g-------~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAG-------GIAAFIDAEHALDPE 104 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEECCCCcCHH
Confidence 367889999999999999988776553 357777765444444
No 157
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=59.67 E-value=8.4 Score=40.82 Aligned_cols=27 Identities=15% Similarity=0.020 Sum_probs=22.8
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~l 232 (911)
....|++|.-++|+|||..+-+++..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445788999999999999988887765
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=56.63 E-value=22 Score=37.89 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=19.9
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ 231 (911)
...+.+|.-+.|+|||..+-++...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457899999999999988777543
No 159
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=56.01 E-value=20 Score=38.27 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=24.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHH-hcC
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLL-CQG 236 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll-~~g 236 (911)
..+.+|.-++|+|||..+.++...+. ..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g 181 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG 181 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 46889999999999999999888877 554
No 160
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=54.56 E-value=10 Score=35.85 Aligned_cols=26 Identities=19% Similarity=0.028 Sum_probs=20.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll 233 (911)
....+|.-+.|+|||..+-++...+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34667889999999988777776554
No 161
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=54.40 E-value=15 Score=44.31 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=23.1
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
..++.+|.-+.|+|||..+-++...+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999998888776644
No 162
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=54.08 E-value=23 Score=45.54 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=47.6
Q ss_pred ccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh-HHHHH
Q 043990 182 RFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV-SNWEA 260 (911)
Q Consensus 182 ~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl-~qW~~ 260 (911)
..|-|-|+++|.. ..+..++....|+|||.+.+.-+..++..+.... ...++|||+++... ..-.+
T Consensus 9 ~~~t~eQ~~~i~~------------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~-~~~~il~~Tft~~aa~e~~~ 75 (1232)
T 3u4q_A 9 STWTDDQWNAIVS------------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPI-DVDRLLVVTFTNASAAEMKH 75 (1232)
T ss_dssp -CCCHHHHHHHHC------------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCC-CGGGEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHhC------------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCC-CccceEEEeccHHHHHHHHH
Confidence 3566899998852 2346677888999999999888877777653222 25689999998544 33333
Q ss_pred HHHH
Q 043990 261 EIKK 264 (911)
Q Consensus 261 Ei~k 264 (911)
.+.+
T Consensus 76 ri~~ 79 (1232)
T 3u4q_A 76 RIAE 79 (1232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 163
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=53.65 E-value=12 Score=37.51 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=25.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
++.-.||+|||...+-.+..+..++ .+++++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~~-------~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIAQ-------YKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT-------CCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEccc
Confidence 4567899999977777776665553 578888886
No 164
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=52.90 E-value=17 Score=41.55 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=47.7
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEe
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLF 614 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~ 614 (911)
.+.+|||.+......+.|.+.|...|++....+.. +.+.. +. +.+.......|.-++....+|+-
T Consensus 381 ~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~--g~---v~i~~g~L~~GF~~p~~klaVIT 445 (483)
T 3hjh_A 381 FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASD--RG---RYLMIGAAEHGFVDTVRNLALIC 445 (483)
T ss_dssp CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCT--TC---EEEEESCCCSCEEETTTTEEEEE
T ss_pred CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCC--Cc---EEEEEcccccCcccCCCCEEEEE
Confidence 36799999999999999999999999886544321 11221 22 44555677889999888888875
Q ss_pred C
Q 043990 615 D 615 (911)
Q Consensus 615 D 615 (911)
+
T Consensus 446 E 446 (483)
T 3hjh_A 446 E 446 (483)
T ss_dssp H
T ss_pred c
Confidence 4
No 165
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=52.84 E-value=17 Score=41.14 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=19.4
Q ss_pred CCceEEEcCCCchHHHHHHHHHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ 231 (911)
..+.||.-+.|+|||..+-++...
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 367899999999999877766644
No 166
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=50.21 E-value=7.3 Score=47.50 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=31.2
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
...+|++|.-+.|+|||..+=+++..+ ..+++.|-...++..|..+-
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~~~~l~sk~~ges 282 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIMSKLAGES 282 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEEHHHHHSSCTTHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEEhHHhhcccchHH
Confidence 456799999999999999877666432 23455555555555444333
No 167
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=48.32 E-value=12 Score=42.90 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ 231 (911)
..+|++|.-++|+|||..+=++...
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999987777654
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=47.69 E-value=15 Score=40.26 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=19.8
Q ss_pred CceEE--EcCCCchHHHHHHHHHHHHHh
Q 043990 209 HGCIL--ADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 209 ~G~IL--ADemGLGKTlqaIali~~ll~ 234 (911)
...+| .-+.|.|||..+-.++..+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 45667 789999999988877766543
No 169
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=47.31 E-value=18 Score=35.92 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=26.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P 251 (911)
|..-..|.|||.+++.++..+.++| .++|++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G-------~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG-------YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT-------CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC-------CCEEEEcc
Confidence 4455679999999999999988776 36777765
No 170
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=45.76 E-value=52 Score=29.12 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=43.3
Q ss_pred eEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcC
Q 043990 538 RIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFND 584 (911)
Q Consensus 538 KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~ 584 (911)
-.++||.-...|..|.+.++..|+.++.|......+.|..-++.|..
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999986
No 171
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=44.64 E-value=71 Score=35.00 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=61.6
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHc-CC---CEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-RY---PYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~-gi---~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
.+||......++.......+.++||.+.....+.-+.+.+... ++ .+..++|+....++....... + ++
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~-----~--iv 105 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARA-----K--VI 105 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHC-----S--EE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccCC-----C--EE
Confidence 4889776655554443235789999999988888777777665 66 899999999987776554321 2 56
Q ss_pred EEecCCccc-----ccCCCCCCEEEEeC
Q 043990 593 LLSSKAGGC-----GLNLIGGNRLVLFD 615 (911)
Q Consensus 593 LlStkagg~-----GLNL~~An~VIl~D 615 (911)
+.+...... .+++...+.||+=+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIiDE 133 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVFDE 133 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEEET
T ss_pred EecHHHHHHHHhcCCcchhhceEEEEEC
Confidence 666544322 34566667666633
No 172
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=44.07 E-value=68 Score=40.78 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=65.6
Q ss_pred cchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 517 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE----RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 517 ~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~----~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
.+||..+....+-.... .+.+++|.+..+..+..+.+.+.. .++.+..++|..+..++..++.....+..+ ++
T Consensus 634 GsGKT~val~aa~~~~~-~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~d--Iv 710 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVD-NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID--IL 710 (1151)
T ss_dssp CTTTHHHHHHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS--EE
T ss_pred CCCHHHHHHHHHHHHHH-hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC--EE
Confidence 48897654433322222 578999999998777666665553 368899999999999999999988876555 45
Q ss_pred EEecCCcccccCCCCCCEEEE
Q 043990 593 LLSSKAGGCGLNLIGGNRLVL 613 (911)
Q Consensus 593 LlStkagg~GLNL~~An~VIl 613 (911)
+.+.......+++.....||+
T Consensus 711 V~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 711 IGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp EECTHHHHSCCCCSSEEEEEE
T ss_pred EECHHHHhCCccccccceEEE
Confidence 555555666667766665555
No 173
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=43.83 E-value=58 Score=28.56 Aligned_cols=75 Identities=13% Similarity=0.036 Sum_probs=34.8
Q ss_pred CCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcc-----cc-cCCCCCCEEEEeCCCCCcchHHHHHHhhhhcC
Q 043990 561 YPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGG-----CG-LNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 634 (911)
Q Consensus 561 i~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg-----~G-LNL~~An~VIl~Dp~WNPa~~~QAigR~~RiG 634 (911)
+..+.++-.++...-..++..++.......+++++..... .. ....++...-++.-|+++....+++.++...+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 4455566555544444555555432233445555543321 10 11122222223344666777777777766544
Q ss_pred C
Q 043990 635 Q 635 (911)
Q Consensus 635 Q 635 (911)
+
T Consensus 127 ~ 127 (135)
T 3eqz_A 127 A 127 (135)
T ss_dssp -
T ss_pred c
Confidence 3
No 174
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=43.82 E-value=26 Score=37.74 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~l 232 (911)
+.+++++..+.+.+... ....++.+|.-+.|+|||..+-++...+
T Consensus 50 ~~~~~~l~~l~~~~~~~--~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREG--KIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp HHHHHHHHHHHHHHHTT--CCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 66777777776644321 1123578999999999999988888766
No 175
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=43.14 E-value=94 Score=27.54 Aligned_cols=25 Identities=4% Similarity=0.165 Sum_probs=13.5
Q ss_pred CeEEEEEcchHHHHHHHHHHHHcCC
Q 043990 537 DRIVLVSNYTQTLDLFAQLCRERRY 561 (911)
Q Consensus 537 ~KVIIFSq~~~~ld~L~~~L~~~gi 561 (911)
.+|+|+.........+...|...|+
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~ 32 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSDAGF 32 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCe
Confidence 4555555555555555555555544
No 176
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=43.04 E-value=25 Score=38.47 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=29.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHH
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSN 257 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~q 257 (911)
.+|.-+.|+|||..++.++..+...+ .+++.|.......+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~g-------g~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMG-------GVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEecccccch
Confidence 45678899999999998887776543 46777877654433
No 177
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=42.22 E-value=60 Score=35.03 Aligned_cols=40 Identities=13% Similarity=-0.035 Sum_probs=29.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043990 211 CILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV 255 (911)
Q Consensus 211 ~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl 255 (911)
..++-+.|.|||..++.++....+.+. ..+++.|....-+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~-----g~~vlyId~E~s~ 70 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYP-----DAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCT-----TCEEEEEESSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCC-----CceEEEEeccchh
Confidence 467899999999999999888776531 2467777776433
No 178
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=41.98 E-value=63 Score=40.88 Aligned_cols=96 Identities=9% Similarity=0.043 Sum_probs=67.5
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH---cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEE
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE---RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~---~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~ 592 (911)
..|||..+..-.+..... .+.++||.+..+..+..+...|.. .++.+..++|+++..+|...+..+..+..+ ++
T Consensus 102 TGSGKTl~~l~~il~~~~-~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~--Il 178 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLAR-KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--IL 178 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHT-TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS--EE
T ss_pred CCCcHHHHHHHHHHHHHh-cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC--EE
Confidence 358998755444444333 578999999999999888888887 578999999999988888888888875444 45
Q ss_pred EEecCCccc---ccCCCCCCEEEEe
Q 043990 593 LLSSKAGGC---GLNLIGGNRLVLF 614 (911)
Q Consensus 593 LlStkagg~---GLNL~~An~VIl~ 614 (911)
+.+....-. -+++...+.||+=
T Consensus 179 V~Tp~rL~~~l~~l~~~~l~~lViD 203 (1104)
T 4ddu_A 179 VFSTQFVSKNREKLSQKRFDFVFVD 203 (1104)
T ss_dssp EEEHHHHHHSHHHHHTSCCSEEEES
T ss_pred EECHHHHHHHHHhhcccCcCEEEEe
Confidence 555443311 1445566666553
No 179
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=41.23 E-value=29 Score=39.15 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 186 PHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 186 phQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~l 232 (911)
...++.+..+.+.+.. .....+|.+|.-++|+|||..|-++...+
T Consensus 43 ~~~~~~l~~~~~~~~~--~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 43 ENAREACGVIVELIKS--KKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp HHHHHHHHHHHHHHHT--TCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 4455544444433211 12234689999999999999998888765
No 180
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=41.10 E-value=37 Score=29.13 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=40.9
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCC--CCCCEEEE
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNL--IGGNRLVL 613 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL--~~An~VIl 613 (911)
+-.+..++...+.+..+ ....+..+.++-.++...-..++..++.......++++|...... ... .+|+..+
T Consensus 25 ~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l- 98 (116)
T 3a10_A 25 GYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV- 98 (116)
T ss_dssp TCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE-
T ss_pred CCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE-
Confidence 45555444444444333 344566777776554322233333333211223355555432211 111 1344333
Q ss_pred eCCCCCcchHHHHHHhhh
Q 043990 614 FDPDWNPANDKQAAARVW 631 (911)
Q Consensus 614 ~Dp~WNPa~~~QAigR~~ 631 (911)
.-|+++....+++.++.
T Consensus 99 -~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 99 -VKSFNFDELKEKVKKLL 115 (116)
T ss_dssp -ECCSSTHHHHHHHHHHT
T ss_pred -ECCCCHHHHHHHHHHHh
Confidence 34667777777776654
No 181
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=40.87 E-value=42 Score=33.50 Aligned_cols=46 Identities=24% Similarity=0.266 Sum_probs=32.1
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
-.+|+-+.|+|||..++.++......+ .+++++.-.....+....+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~-------~~v~~~~~e~~~~~~~~~~ 70 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMG-------EPGIYVALEEHPVQVRQNM 70 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEEccCCHHHHHHHH
Confidence 347788999999999998888776543 3677777654444444433
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=40.79 E-value=36 Score=36.06 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=31.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
.++.+|.-+.|+|||..+-+++..+...+ .+++.|....+...+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~-------~~~~~i~~~~~~~~~~~~~ 84 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRG-------YRVIYSSADDFAQAMVEHL 84 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTT-------CCEEEEEHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCC-------CEEEEEEHHHHHHHHHHHH
Confidence 46789999999999998888877765542 2455555444444444333
No 183
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=40.31 E-value=27 Score=35.44 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCC
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGF 237 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~ 237 (911)
|-+-++|.|||..+++++..+.++|.
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 56778999999999999999988874
No 184
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=39.87 E-value=25 Score=38.32 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=18.0
Q ss_pred cCCCceEEE-cCCCchHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSI 226 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaI 226 (911)
.|+++||+| -.+|+|||.+++
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 82 DGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp GTCCEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEEECCCCCCCcEecc
Confidence 578999998 568999999875
No 185
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=39.85 E-value=55 Score=29.16 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=11.2
Q ss_pred eEEEEEcchHHHHHHHHHHHHcCC
Q 043990 538 RIVLVSNYTQTLDLFAQLCRERRY 561 (911)
Q Consensus 538 KVIIFSq~~~~ld~L~~~L~~~gi 561 (911)
+|+|..........+...|...|+
T Consensus 8 ~iLivdd~~~~~~~l~~~l~~~g~ 31 (140)
T 3grc_A 8 RILICEDDPDIARLLNLMLEKGGF 31 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCHHHHHHHHHHHHHCCC
Confidence 444444444444444444444444
No 186
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=39.79 E-value=24 Score=30.06 Aligned_cols=88 Identities=8% Similarity=0.044 Sum_probs=38.4
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCC--CCceEEEEecCCcccccCC--CCCCEE
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPS--KNEFVFLLSSKAGGCGLNL--IGGNRL 611 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~--~~~~v~LlStkagg~GLNL--~~An~V 611 (911)
+-.+..+....+.+..+. ...+..+.++-.++...-..++...+... ....+++++...... .. .++..
T Consensus 25 g~~v~~~~~~~~~~~~l~----~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~- 97 (119)
T 2j48_A 25 GFKVIWLVDGSTALDQLD----LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASA- 97 (119)
T ss_dssp TCEEEEESCHHHHHHHHH----HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSE-
T ss_pred CcEEEEecCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHH-
Confidence 455555554444444332 33566666665544222233333333211 223344554433222 11 12332
Q ss_pred EEeCCCCCcchHHHHHHhhh
Q 043990 612 VLFDPDWNPANDKQAAARVW 631 (911)
Q Consensus 612 Il~Dp~WNPa~~~QAigR~~ 631 (911)
++.-|.++....+++.++.
T Consensus 98 -~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 98 -ILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp -ECSSCSTTHHHHHHHHTTC
T ss_pred -hccCCCCHHHHHHHHHHHh
Confidence 2334566666666666654
No 187
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=39.34 E-value=23 Score=39.93 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=27.0
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
..+|.+|.-+.|+|||..+-++...+ . ..+++.|....++..|
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~--~-------~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA--N-------NSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC--C-------SSEEEEECCC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc--C-------CCCEEEEeHHHHHhhh
Confidence 45789999999999999888777553 1 2355666666655443
No 188
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=39.04 E-value=1.9e+02 Score=28.18 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=57.4
Q ss_pred cchHHHHH-HHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHhhcCCCCCc
Q 043990 517 LSGKMHVL-ARLLGHLRQR-TDDRIVLVSNYTQTLDLFAQLCRER-----RYPYLRLDGTTSISKRQKLVNHFNDPSKNE 589 (911)
Q Consensus 517 ~S~Kl~~L-~~LL~~l~~~-~~~KVIIFSq~~~~ld~L~~~L~~~-----gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~ 589 (911)
.+||.... .-++..+... .+.++||.+.....+..+.+.+... ++.+..+.|+.+...+.+.+..- ..+
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~---~~~- 136 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN---CPH- 136 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHS---CCS-
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcC---CCC-
Confidence 48887543 3344443321 2348999999998888777777664 78899999999876665554432 123
Q ss_pred eEEEEecCCc-----ccccCCCCCCEEEEeC
Q 043990 590 FVFLLSSKAG-----GCGLNLIGGNRLVLFD 615 (911)
Q Consensus 590 ~v~LlStkag-----g~GLNL~~An~VIl~D 615 (911)
+++.+.... ...+++...+.||+=+
T Consensus 137 -i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 137 -IVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp -EEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred -EEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 444443322 2235566666666533
No 189
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=38.88 E-value=23 Score=37.37 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.2
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ 231 (911)
....|.+|.-+.|+|||..+-++...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34568899999999999988877654
No 190
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=38.67 E-value=25 Score=38.42 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=18.3
Q ss_pred cCCCceEEE-cCCCchHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSI 226 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaI 226 (911)
.|+++||+| -.+|+|||.++.
T Consensus 83 ~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 83 DGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp TTCEEEEEEECSTTSSHHHHHH
T ss_pred CCcceeEEEeCCCCCCCceEeC
Confidence 578999998 679999999885
No 191
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=38.12 E-value=40 Score=30.33 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHhhcCC-CeEEEEEc-chHHHHHHHHHHHHcCCCEEEEeCCCCH
Q 043990 519 GKMHVLARLLGHLRQRTD-DRIVLVSN-YTQTLDLFAQLCRERRYPYLRLDGTTSI 572 (911)
Q Consensus 519 ~Kl~~L~~LL~~l~~~~~-~KVIIFSq-~~~~ld~L~~~L~~~gi~~~~LdGsts~ 572 (911)
+++..+...+..+. .+ ++|||+|. .-.........|...|+++..|+|++..
T Consensus 73 ~~~~~~~~~~~~~~--~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 73 YKLKDIYLQAAELA--LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp GGHHHHHHHHHHHH--TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred ccHHHHHHHHHHhc--cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 34444555555543 35 89999994 5556778888999999999999998763
No 192
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=37.28 E-value=42 Score=29.53 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=18.8
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHcCCCE
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRERRYPY 563 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~~gi~~ 563 (911)
..+|+|..........+...|...|+.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v 33 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQV 33 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEE
Confidence 4567777777777777777777666644
No 193
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=37.00 E-value=34 Score=35.23 Aligned_cols=26 Identities=27% Similarity=0.139 Sum_probs=23.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCC
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGF 237 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~ 237 (911)
|.+-++|.|||+.+++++..+.++|.
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 66788999999999999999988873
No 194
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=36.94 E-value=36 Score=29.79 Aligned_cols=95 Identities=13% Similarity=-0.041 Sum_probs=49.8
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCC--CCCceEEEEecCCcccccCC--CCCCEE
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDP--SKNEFVFLLSSKAGGCGLNL--IGGNRL 611 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~--~~~~~v~LlStkagg~GLNL--~~An~V 611 (911)
+-.|..+....+.+..+ ....+..+.++-.++...-..++...+.. .....+++++......-... .+|+.
T Consensus 27 g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~- 101 (127)
T 3i42_A 27 GFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF- 101 (127)
T ss_dssp TEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE-
T ss_pred CCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH-
Confidence 45666665555444444 44567788888766544444555555432 23445666665432221111 13444
Q ss_pred EEeCCCCCcchHHHHHHhhhhcCCc
Q 043990 612 VLFDPDWNPANDKQAAARVWRDGQK 636 (911)
Q Consensus 612 Il~Dp~WNPa~~~QAigR~~RiGQk 636 (911)
++--|.++....+++.++++-++.
T Consensus 102 -~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 102 -YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp -EEESSCCHHHHHHHHHHHC-----
T ss_pred -heeCCCCHHHHHHHHHHhhccCCC
Confidence 333567888888888888875543
No 195
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=36.81 E-value=31 Score=46.22 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=33.7
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhh
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLV 255 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl 255 (911)
....+++|.-+.|+|||..|++++.....+| .+++++....++
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G-------~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHAL 1467 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTT-------CCEEEECTTSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-------CcEEEEEccccc
Confidence 3456889999999999999999988776554 367777777554
No 196
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=36.73 E-value=66 Score=26.55 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCC
Q 043990 524 LARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571 (911)
Q Consensus 524 L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts 571 (911)
+...+..+....++++||+|+.-.........|...|+.-+.+-|++.
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~ 76 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLK 76 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEETT
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCHH
Confidence 334455542235689999999877788888999999997433337654
No 197
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.58 E-value=24 Score=39.25 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.1
Q ss_pred cCCCceEEE-cCCCchHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSI 226 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaI 226 (911)
.|+++||+| -.+|+|||.+++
T Consensus 138 ~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 138 DGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp TTCCEEEEEESCTTSSHHHHHH
T ss_pred CCcceEEEEECCCCCCCceEeC
Confidence 578999998 679999999985
No 198
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=36.33 E-value=24 Score=36.56 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCC
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGF 237 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~ 237 (911)
|-+-++|.|||..+++++..+.++|.
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 56788999999999999999988873
No 199
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=36.26 E-value=26 Score=38.65 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=18.4
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 113 ~G~N~tifAYGqTGSGKTyTM~G 135 (376)
T 2rep_A 113 DGYPVCIFAYGQTGSGKTFTMEG 135 (376)
T ss_dssp GTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCCceEEEEeCCCCCCCceEeec
Confidence 578899998 6799999998754
No 200
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=35.53 E-value=53 Score=44.01 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=36.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWE 259 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~ 259 (911)
....+|+-+.|.|||.-++.++......+ .++++|.-.....+|.
T Consensus 732 G~lilIaG~PG~GKTtLalqlA~~~a~~g-------~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDPIY 776 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTT-------CCEEEECTTSCCCHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcC-------CcEEEEECCCcHHHHH
Confidence 34568999999999999999988775432 3688998887788885
No 201
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=35.52 E-value=1.5e+02 Score=25.86 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=43.7
Q ss_pred HHHHHHhhcCCCeEEEEEcc------hHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 526 RLLGHLRQRTDDRIVLVSNY------TQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 526 ~LL~~l~~~~~~KVIIFSq~------~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
+.+..+.. ..+|+||+.. =..-....++|...|++|..++=......+..+.+..... ...++.+.
T Consensus 9 ~~v~~~i~--~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~--tvP~ifi~ 80 (109)
T 3ipz_A 9 DTLEKLVN--SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWP--TFPQLYIG 80 (109)
T ss_dssp HHHHHHHT--SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCS--SSCEEEET
T ss_pred HHHHHHHc--cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCC--CCCeEEEC
Confidence 34454443 5799999984 5677888899999999998887655555566555544332 23345543
No 202
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=35.20 E-value=31 Score=34.47 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=24.4
Q ss_pred EEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC
Q 043990 213 LADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251 (911)
Q Consensus 213 LADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P 251 (911)
..-.-|.|||..++.+...+...| .++|+|-.
T Consensus 8 ~s~kgGvGKTt~a~~LA~~la~~g-------~~VlliD~ 39 (237)
T 1g3q_A 8 VSGKGGTGKTTVTANLSVALGDRG-------RKVLAVDG 39 (237)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHHTT-------CCEEEEEC
T ss_pred ecCCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeC
Confidence 344569999999999999887765 36777754
No 203
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=35.19 E-value=91 Score=31.89 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.0
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ 231 (911)
..++.+|.-++|+|||..+-++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567899999999999988887765
No 204
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=34.99 E-value=19 Score=36.26 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 216 DMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 216 emGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
--|.|||..++.+...+...| .++|+|
T Consensus 8 kGGvGKTt~a~~LA~~la~~g-------~~Vlli 34 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDY-------DKIYAV 34 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTC-------SCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCC-------CeEEEE
Confidence 348899999999999887654 356666
No 205
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=34.34 E-value=25 Score=36.19 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=20.6
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 215 DemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
---|.|||..++.+.+.+. +| .++|+|
T Consensus 35 ~kGGvGKTT~a~~LA~~la-~g-------~~Vlli 61 (267)
T 3k9g_A 35 IKGGVGKSTSAIILATLLS-KN-------NKVLLI 61 (267)
T ss_dssp SSSSSCHHHHHHHHHHHHT-TT-------SCEEEE
T ss_pred CCCCchHHHHHHHHHHHHH-CC-------CCEEEE
Confidence 4458999999999998886 54 356666
No 206
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=33.11 E-value=39 Score=34.46 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=24.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
|..-.-|.|||..++.++..+...| .++|+|-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g-------~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLG-------HDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCC-------CcEEEEE
Confidence 3445669999999999999887765 3677775
No 207
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=32.68 E-value=48 Score=42.17 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=33.5
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 216 DMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 216 emGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
..|+|||.+++.-|..++..++ ...++|+|+|..+..+-+..+
T Consensus 9 gAGSGKT~~l~~ri~~ll~~~~----~~~~il~lVP~q~TFt~~~rl 51 (1166)
T 3u4q_B 9 RSGSGKTKLIINSIQDELRRAP----FGKPIIFLVPDQMTFLMEYEL 51 (1166)
T ss_dssp CTTSSHHHHHHHHHHHHHHHCT----TSSCEEEECCGGGHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHhCC----CCCcEEEEecCcccHHHHHHH
Confidence 4899999999999988887753 235899999998877733333
No 208
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=32.59 E-value=24 Score=38.43 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=28.6
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
...|.+|.-+.|+|||..+-++...+ ..+++.|....+...|
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS----------GATFFSISASSLTSKW 157 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT----------TCEEEEEEGGGGCCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc----------CCeEEEEehHHhhccc
Confidence 45788999999999999888776543 2345555555544433
No 209
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=32.54 E-value=68 Score=33.85 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=23.7
Q ss_pred EcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 214 ADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 214 ADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
.-..|.|||.+++.++..+...| +++|+|-
T Consensus 111 s~kgG~GKTtva~nLA~~lA~~G-------~rVLLID 140 (299)
T 3cio_A 111 GATPDSGKTFVSSTLAAVIAQSD-------QKVLFID 140 (299)
T ss_dssp ESSSSSCHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHhCC-------CcEEEEE
Confidence 45579999999999999887654 4677774
No 210
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=32.43 E-value=58 Score=33.22 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=24.4
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcC
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g 236 (911)
-..++.-..|.|||..++.+...+..+|
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 3567888999999999999999988876
No 211
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=32.42 E-value=55 Score=38.85 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=33.2
Q ss_pred cChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 183 FLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 183 ~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
.+-..|.++|..+.+...| -.+|-.+-|-|||..+-.++..+ ...++|.+|+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~--------~~vlta~RGRGKSa~lG~~~a~~----------~~~~~vtAP~ 226 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPG--------VAAVTAARGRGKSALAGQLISRI----------AGRAIVTAPA 226 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSE--------EEEEEECTTSSHHHHHHHHHHHS----------SSCEEEECSS
T ss_pred CCCHHHHHHHHHHHHhhhC--------eEEEecCCCCCHHHHHHHHHHHH----------HhCcEEECCC
Confidence 4557899999888653221 23666679999994444333332 1246899997
No 212
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=32.31 E-value=37 Score=34.46 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=23.0
Q ss_pred EcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 214 ADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 214 ADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
.---|.|||..++.+...+..+| .++|+|=
T Consensus 9 s~kgGvGKTt~a~~LA~~la~~g-------~~VlliD 38 (260)
T 3q9l_A 9 SGKGGVGKTTSSAAIATGLAQKG-------KKTVVID 38 (260)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHhCC-------CcEEEEE
Confidence 34458999999999999988765 3567764
No 213
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=32.26 E-value=28 Score=35.78 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=17.6
Q ss_pred CCCchHHHHHHHHHHHHHhcC
Q 043990 216 DMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 216 emGLGKTlqaIali~~ll~~g 236 (911)
--|.|||..++.+...+...|
T Consensus 9 KGGvGKTT~a~nLA~~la~~G 29 (269)
T 1cp2_A 9 KGGIGKSTTTQNLTSGLHAMG 29 (269)
T ss_dssp CTTSSHHHHHHHHHHHHHTTT
T ss_pred CCCCcHHHHHHHHHHHHHHCC
Confidence 448999999999999887655
No 214
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=32.05 E-value=75 Score=32.99 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=22.4
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 215 DemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
-..|.|||..++.++..+...| +++|+|
T Consensus 90 ~kgG~GKTt~a~nLA~~lA~~G-------~rVLLI 117 (271)
T 3bfv_A 90 EAPGAGKSTIAANLAVAYAQAG-------YKTLIV 117 (271)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT-------CCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCC-------CeEEEE
Confidence 4579999999999999887765 467766
No 215
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=31.77 E-value=1.9e+02 Score=25.39 Aligned_cols=66 Identities=12% Similarity=0.012 Sum_probs=42.9
Q ss_pred HHHHHHhhcCCCeEEEEEc------chHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 526 RLLGHLRQRTDDRIVLVSN------YTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 526 ~LL~~l~~~~~~KVIIFSq------~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
..+..+.. ..+|+||+. +=..-....++|...|++|..++=......|..+.+.-.. ....++.+.
T Consensus 7 ~~v~~~i~--~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~--~tvP~ifi~ 78 (111)
T 3zyw_A 7 LRLKKLTH--AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSW--PTYPQLYVS 78 (111)
T ss_dssp HHHHHHHT--SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTC--CSSCEEEET
T ss_pred HHHHHHHh--cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCC--CCCCEEEEC
Confidence 34444443 589999996 3355778888899999999988766666666655544332 233345544
No 216
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=30.94 E-value=2.8e+02 Score=27.76 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=55.3
Q ss_pred cchHHHH-HHHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCce
Q 043990 517 LSGKMHV-LARLLGHLRQR-TDDRIVLVSNYTQTLDLFAQLCRE----RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEF 590 (911)
Q Consensus 517 ~S~Kl~~-L~~LL~~l~~~-~~~KVIIFSq~~~~ld~L~~~L~~----~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~ 590 (911)
.+||..+ +.-++..+... .+.++||.+..+..+..+.+.+.. .++.+..+.|+.+...+...+. . ..+
T Consensus 90 GsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~-- 163 (249)
T 3ber_A 90 GSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA---K-KPH-- 163 (249)
T ss_dssp TSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH---T-CCS--
T ss_pred CCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc---C-CCC--
Confidence 4888754 44455554442 245799999998877666655554 3889999999988655444332 2 223
Q ss_pred EEEEecCCc------ccccCCCCCCEEEE
Q 043990 591 VFLLSSKAG------GCGLNLIGGNRLVL 613 (911)
Q Consensus 591 v~LlStkag------g~GLNL~~An~VIl 613 (911)
+++.+.... ..++++...+.||+
T Consensus 164 I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 164 IIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp EEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 444443322 23466777776665
No 217
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=30.71 E-value=33 Score=37.57 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.4
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 102 ~G~N~tifAYGQTGSGKTyTM~G 124 (359)
T 3nwn_A 102 DGYNGTIMCYGQTGAGKTYTMMG 124 (359)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTB
T ss_pred CCCCEEEEEeCCCCCCccEEeCC
Confidence 578899998 6799999998753
No 218
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=30.66 E-value=41 Score=34.54 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=23.9
Q ss_pred EEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 213 LADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 213 LADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
..-.-|.|||..++.++..+...| .++|+|=
T Consensus 24 ~s~kGGvGKTT~a~nLA~~la~~G-------~~VlliD 54 (262)
T 2ph1_A 24 MSGKGGVGKSTVTALLAVHYARQG-------KKVGILD 54 (262)
T ss_dssp ECSSSCTTHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred EcCCCCCCHHHHHHHHHHHHHHCC-------CeEEEEe
Confidence 344568999999999999887765 3677765
No 219
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=30.60 E-value=31 Score=36.30 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=22.1
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 215 DemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
---|.|||..++.++..+...| .++|+|
T Consensus 48 ~KGGvGKTT~a~nLA~~La~~G-------~~Vlli 75 (307)
T 3end_A 48 GKGGIGKSTTSSNLSAAFSILG-------KRVLQI 75 (307)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTT-------CCEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHCC-------CeEEEE
Confidence 4568999999999999988765 356665
No 220
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=30.48 E-value=35 Score=38.48 Aligned_cols=22 Identities=36% Similarity=0.735 Sum_probs=18.1
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.+++.
T Consensus 134 ~GyN~tIfAYGQTGSGKTyTM~G 156 (443)
T 2owm_A 134 EGYHTCIFAYGQTGSGKSYTMMG 156 (443)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTC
T ss_pred cCCceEEEEeCCCCCCCCEEeec
Confidence 578899998 5699999998753
No 221
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=30.35 E-value=2.4e+02 Score=25.21 Aligned_cols=66 Identities=8% Similarity=-0.003 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCCeEEEEEcc------hHHHHHHHHHHHHcCCC---EEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 526 RLLGHLRQRTDDRIVLVSNY------TQTLDLFAQLCRERRYP---YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 526 ~LL~~l~~~~~~KVIIFSq~------~~~ld~L~~~L~~~gi~---~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
..+..+.. ..+|+||+.. =..-....++|...|++ |..++=......|..+....... ...++.+.
T Consensus 7 ~~v~~~i~--~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~--tvP~vfI~ 81 (121)
T 3gx8_A 7 KAIEDAIE--SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWP--TIPQLYVN 81 (121)
T ss_dssp HHHHHHHH--SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCC--SSCEEEET
T ss_pred HHHHHHhc--cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCC--CCCeEEEC
Confidence 34444443 5899999984 45677888889999998 88777666666666665544332 23344544
No 222
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=30.10 E-value=29 Score=35.01 Aligned_cols=25 Identities=8% Similarity=0.200 Sum_probs=21.2
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~l 232 (911)
.++.++.-+.|+|||..|.+++..+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567889999999999999988765
No 223
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=29.91 E-value=33 Score=35.76 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.0
Q ss_pred CCCchHHHHHHHHHHHHHhcC
Q 043990 216 DMGLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 216 emGLGKTlqaIali~~ll~~g 236 (911)
--|.|||..++.+...+...|
T Consensus 10 KGGvGKTT~a~nLA~~La~~G 30 (289)
T 2afh_E 10 KGGIGKSTTTQNLVAALAEMG 30 (289)
T ss_dssp CTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHHHHHHHCC
Confidence 458999999999999987765
No 224
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=29.88 E-value=61 Score=36.30 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=30.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
.++.+|.-+.|+|||..+-++...+....+ ..+++.|....+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~-----~~~v~~v~~~~~~~~~ 175 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEP-----DLRVMYITSEKFLNDL 175 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCC-----SSCEEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCC-----CCeEEEeeHHHHHHHH
Confidence 567899999999999988888777655431 2245555444444333
No 225
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=29.87 E-value=19 Score=43.87 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=30.4
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHH
Q 043990 206 AGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNW 258 (911)
Q Consensus 206 ~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW 258 (911)
...+|++|.-+.|+|||+.|-+++..+ ..+.+.|..+.++..|
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECCHHHHHTTT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEeccchhhccc
Confidence 346799999999999999887777543 2345555555666555
No 226
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.93 E-value=48 Score=35.45 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=26.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCc
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPT 252 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~ 252 (911)
+..---|.|||.+++++.+.+...| +++|+|---
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~G-------~rVLlvD~D 51 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARSG-------KKTLVISTD 51 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEECC
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCC-------CcEEEEeCC
Confidence 4456679999999999999988765 467777643
No 227
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=28.92 E-value=2e+02 Score=28.41 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=45.1
Q ss_pred ccchHHHH-HHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHH
Q 043990 516 ELSGKMHV-LARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRER-----RYPYLRLDGTTSISKRQKL 578 (911)
Q Consensus 516 ~~S~Kl~~-L~~LL~~l~~-~~~~KVIIFSq~~~~ld~L~~~L~~~-----gi~~~~LdGsts~~~R~~i 578 (911)
..+||... +.-++..+.. ..+.++||.+..+..+..+.+.+... ++++..+.|+.+..++...
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 139 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR 139 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh
Confidence 34899765 4555555432 24579999999998888877777664 6788999999887665543
No 228
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=28.68 E-value=36 Score=37.26 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.1
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 86 ~G~n~tifAYGqTGSGKTyTM~G 108 (359)
T 1x88_A 86 MGYNCTIFAYGQTGTGKTFTMEG 108 (359)
T ss_dssp TTCEEEEEEEECTTSSHHHHHTB
T ss_pred CCCceEEEEeCCCCCCCceEEec
Confidence 467899998 6799999998754
No 229
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=28.51 E-value=58 Score=34.02 Aligned_cols=24 Identities=25% Similarity=0.043 Sum_probs=21.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ 231 (911)
.++.+|.-+.|+|||+.+.+++..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHhh
Confidence 467888999999999999988865
No 230
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=28.31 E-value=2.2e+02 Score=27.09 Aligned_cols=78 Identities=6% Similarity=0.111 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCccc
Q 043990 522 HVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGC 601 (911)
Q Consensus 522 ~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~ 601 (911)
..+.+.+..... ....+-|.+........|+..|...|+++..+++... .|. .. +.++|--..-
T Consensus 48 ~~i~~~I~~~~~-g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~~---v~v~t~~~~K 111 (174)
T 3dmn_A 48 DQVVDQLAMNDS-ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---PG---VIVVPSFLAK 111 (174)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---SS---EEEEEGGGCT
T ss_pred HHHHHHHHHhcc-CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---CC---eEEEEccccC
Confidence 344455544322 3567888899999999999999999999988876542 122 23 4455555667
Q ss_pred ccCCCCCCEEEEeCCCC
Q 043990 602 GLNLIGGNRLVLFDPDW 618 (911)
Q Consensus 602 GLNL~~An~VIl~Dp~W 618 (911)
|| ..+.||++++..
T Consensus 112 Gl---Ef~~V~~~~~~~ 125 (174)
T 3dmn_A 112 GL---EFDAVIVWNANQ 125 (174)
T ss_dssp TC---CEEEEEEETCBT
T ss_pred Cc---CCCEEEEecCCc
Confidence 76 478999998764
No 231
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=28.12 E-value=36 Score=37.17 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=18.1
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 78 NGYNGTVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCCcceEEEECCCCCCcceEeec
Confidence 578899998 6799999998753
No 232
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=27.93 E-value=1.3e+02 Score=35.15 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=55.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
..+||-.. -++..+. .+.++||.+.....+.-....|...|+++..++|+++..++..+...+........+++++
T Consensus 68 TGsGKTl~--~~lpal~--~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~T 143 (591)
T 2v1x_A 68 TGGGKSLC--YQLPALC--SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVT 143 (591)
T ss_dssp TTSCTTHH--HHHHHHT--SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEEC
T ss_pred CCChHHHH--HHHHHHH--cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEC
Confidence 34777542 2223232 2468999999999988888888889999999999999998888888774322233356666
Q ss_pred cC
Q 043990 596 SK 597 (911)
Q Consensus 596 tk 597 (911)
..
T Consensus 144 pe 145 (591)
T 2v1x_A 144 PE 145 (591)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 233
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=27.86 E-value=39 Score=36.73 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.1
Q ss_pred cCCCceEEE-cCCCchHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQS 225 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqa 225 (911)
.|+++||+| -.+|+|||.++
T Consensus 92 ~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 92 EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCCeEE
Confidence 467899998 67999999986
No 234
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=27.52 E-value=38 Score=36.23 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=17.2
Q ss_pred CchHHHHHHHHHHHHHhcC
Q 043990 218 GLGKTLQSIALLYTLLCQG 236 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g 236 (911)
|.|||-+++-|...|...|
T Consensus 58 GVGKTTtavNLA~aLA~~G 76 (314)
T 3fwy_A 58 GIGKSTTSSNLSAAFSILG 76 (314)
T ss_dssp TSSHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHCC
Confidence 7799999999999998876
No 235
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=27.40 E-value=42 Score=36.15 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=18.2
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCCeEEEEEECCCCCCCceEecc
Confidence 468899998 5699999998754
No 236
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=27.34 E-value=47 Score=36.24 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=18.4
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 90 ~G~n~tifAYGqTGSGKTyTm~G 112 (354)
T 3gbj_A 90 DGYNACIFAYGQTGSGKSYTMMG 112 (354)
T ss_dssp TTCCEEEEEEECTTSSHHHHHTB
T ss_pred CCceeEEEeeCCCCCCCceEEec
Confidence 578899998 7899999998753
No 237
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=27.18 E-value=55 Score=35.45 Aligned_cols=32 Identities=34% Similarity=0.383 Sum_probs=25.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
+..---|.|||.++++++..+...| +++|+|-
T Consensus 30 v~sgKGGvGKTTvA~~LA~~lA~~G-------~rVLlvD 61 (349)
T 3ug7_A 30 MFGGKGGVGKTTMSAATGVYLAEKG-------LKVVIVS 61 (349)
T ss_dssp EEECSSSTTHHHHHHHHHHHHHHSS-------CCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCC-------CeEEEEe
Confidence 4456679999999999999988765 3677765
No 238
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=26.70 E-value=43 Score=36.65 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.3
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 101 ~G~N~tIfAYGqTGSGKTyTM~G 123 (358)
T 2nr8_A 101 DGYNGTIMCYGQTGAGKTYTMMG 123 (358)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTB
T ss_pred CCCceEEEEECCCCCCCceEecc
Confidence 578899998 6799999998753
No 239
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=26.63 E-value=44 Score=36.65 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=18.0
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTm~G 104 (365)
T 2y65_A 82 AGYNGTIFAYGQTSSGKTHTMEG 104 (365)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCCceEEEeecCCCCCCceEEec
Confidence 468899998 6699999998754
No 240
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=26.63 E-value=37 Score=37.01 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 218 GLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 218 GLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
|.|||..++.+.+.+...| +++|+|
T Consensus 12 GvGKTT~a~nLA~~LA~~G-------~rVLlI 36 (361)
T 3pg5_A 12 GVGKTTLSTNVAHYFALQG-------KRVLYV 36 (361)
T ss_dssp CHHHHHHHHHHHHHHHHTT-------CCEEEE
T ss_pred CCcHHHHHHHHHHHHHhCC-------CcEEEE
Confidence 7899999999999887755 467777
No 241
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=26.34 E-value=45 Score=36.69 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=17.9
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 98 ~G~n~tifAYGqTGSGKTyTm~G 120 (373)
T 2wbe_C 98 NGYNCTVFAYGQTGTGKTHTMVG 120 (373)
T ss_dssp HTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCceEEEEeecCCCCCcceeccc
Confidence 467899998 5799999988754
No 242
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=26.23 E-value=2e+02 Score=25.66 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=40.0
Q ss_pred CCeEEEEEc------chHHHHHHHHHHHHcCCC-EEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 536 DDRIVLVSN------YTQTLDLFAQLCRERRYP-YLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 536 ~~KVIIFSq------~~~~ld~L~~~L~~~gi~-~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
..+|+||+. +=..-....++|...|++ |..++=....+.|..+.+.... ....++.+.
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~--~tvP~vfI~ 83 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNW--PTIPQVYLN 83 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTC--CSSCEEEET
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCC--CCcCeEEEC
Confidence 379999998 456678888999999995 8888866666666665544333 233345554
No 243
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=26.19 E-value=51 Score=32.99 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=17.9
Q ss_pred EcCCCchHHHHHHHHHHHHHhc
Q 043990 214 ADDMGLGKTLQSIALLYTLLCQ 235 (911)
Q Consensus 214 ADemGLGKTlqaIali~~ll~~ 235 (911)
.---|.|||..++.+.+.+...
T Consensus 11 s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 11 SAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp ESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCcchHHHHHHHHHHHHhC
Confidence 3445899999999999988765
No 244
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=26.15 E-value=43 Score=29.42 Aligned_cols=37 Identities=5% Similarity=0.121 Sum_probs=32.5
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCC
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts 571 (911)
.+++|||+|..-.........|...|+++..|+|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4678999999887888889999999999999999865
No 245
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=26.06 E-value=1.2e+02 Score=25.51 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=39.9
Q ss_pred eEEEEEcchH-HH------HHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 538 RIVLVSNYTQ-TL------DLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 538 KVIIFSq~~~-~l------d~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
+|+||+...- .. .....+|...|++|..++=......|..+.+....+.....++.+.
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~ 67 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNG 67 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEET
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEEC
Confidence 6788865432 23 5778889999999999998888778887777765322233345543
No 246
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=25.90 E-value=94 Score=28.35 Aligned_cols=45 Identities=7% Similarity=0.003 Sum_probs=36.6
Q ss_pred EEEEEcchHH-------HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhc
Q 043990 539 IVLVSNYTQT-------LDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFN 583 (911)
Q Consensus 539 VIIFSq~~~~-------ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn 583 (911)
|+||+...-. ...+..+|...|+.|..++=++....|..++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 5666554422 36888899999999999999999999999999984
No 247
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=25.83 E-value=59 Score=34.17 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=24.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
|..-..|.|||.+++.++..+...| +++|+|=
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~G-------~rVLLID 128 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQTN-------KRVLLID 128 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTTT-------CCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC-------CCEEEEe
Confidence 3446679999999999998887654 4677773
No 248
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=25.77 E-value=47 Score=36.10 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=17.7
Q ss_pred cCCCceEEE-cCCCchHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSI 226 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaI 226 (911)
.|+++||+| -.+|+|||.++.
T Consensus 81 ~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 81 EGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp TTCCEEEEEESSTTSSHHHHHC
T ss_pred hhcCeeEEEecccCCCceEeec
Confidence 578899998 679999999874
No 249
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=25.68 E-value=46 Score=36.62 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=18.2
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 99 ~G~n~tifAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 99 QGFNGTIFAYGQTGTGKTYTMEG 121 (372)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTB
T ss_pred CCCeeeEEeecCCCCCCCEeEec
Confidence 578899998 5799999998754
No 250
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=25.43 E-value=43 Score=36.73 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=17.9
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.+++.
T Consensus 87 ~G~N~tifAYGqTGSGKTyTm~G 109 (366)
T 2zfi_A 87 EGYNVCIFAYGQTGAGKSYTMMG 109 (366)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTB
T ss_pred cCCeeEEEEeCCCCCCCceEeeC
Confidence 578899998 5699999988754
No 251
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=25.32 E-value=37 Score=37.04 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=18.1
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.+++.
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM~G 97 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTMMG 97 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTB
T ss_pred cCCccceeeecCCCCCCCeEEec
Confidence 468899997 6799999998753
No 252
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=25.29 E-value=39 Score=37.69 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=18.4
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 152 ~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 152 EGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp TTCEEEEEEEESTTSSHHHHHHC
T ss_pred cCCceeEEeecCCCCCCCeEeec
Confidence 467899998 5799999998765
No 253
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=25.09 E-value=1.3e+02 Score=27.24 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=37.2
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCC-cccccCC
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKA-GGCGLNL 605 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStka-gg~GLNL 605 (911)
..+|+|+.........+...|...|+.+... .+.. .++........+ ++|+.... +..|+.+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~---~~~~---~a~~~l~~~~~d--lvi~d~~l~~~~g~~~ 69 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITF---TSPL---DALEALKGTSVQ--LVISDMRMPEMGGEVF 69 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE---SCHH---HHHHHHTTSCCS--EEEEESSCSSSCHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEe---CCHH---HHHHHHhcCCCC--EEEEecCCCCCCHHHH
Confidence 4688888888888889999888877755422 2222 233444432333 56666554 3345543
No 254
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=25.00 E-value=42 Score=28.87 Aligned_cols=37 Identities=5% Similarity=0.108 Sum_probs=32.0
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCC
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts 571 (911)
.++++||+|..-.........|...|+++..|+|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4679999999888888889999999998888999754
No 255
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=24.98 E-value=1.8e+02 Score=33.10 Aligned_cols=76 Identities=11% Similarity=0.070 Sum_probs=56.2
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS 595 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS 595 (911)
..+||-.. -++..+.. +.++||++.....+.-....|...|+++..++|+.+..++..+...+..+..+ +++++
T Consensus 49 TGsGKTl~--~~lp~l~~--~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~--ilv~T 122 (523)
T 1oyw_A 49 TGGGKSLC--YQIPALLL--NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIR--LLYIA 122 (523)
T ss_dssp CHHHHHHH--HHHHHHHS--SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCS--EEEEC
T ss_pred CCcHHHHH--HHHHHHHh--CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCC--EEEEC
Confidence 45889642 22333332 46899999999998888888999999999999999988888888877664444 45555
Q ss_pred cC
Q 043990 596 SK 597 (911)
Q Consensus 596 tk 597 (911)
..
T Consensus 123 pe 124 (523)
T 1oyw_A 123 PE 124 (523)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 256
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=24.91 E-value=3.5e+02 Score=28.55 Aligned_cols=92 Identities=14% Similarity=0.096 Sum_probs=58.6
Q ss_pred cchHHHHH-HHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHhhcCCCCCc
Q 043990 517 LSGKMHVL-ARLLGHLRQR-TDDRIVLVSNYTQTLDLFAQLCRER-----RYPYLRLDGTTSISKRQKLVNHFNDPSKNE 589 (911)
Q Consensus 517 ~S~Kl~~L-~~LL~~l~~~-~~~KVIIFSq~~~~ld~L~~~L~~~-----gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~ 589 (911)
.+||.... .-++..+... .+.++||.+.....+..+.+.+... ++.+..+.|+.+.......+..- ..+
T Consensus 55 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~- 130 (391)
T 1xti_A 55 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN---CPH- 130 (391)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHS---CCS-
T ss_pred CCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcC---CCC-
Confidence 48887543 3444443321 3458999999998888777777664 78899999999877766555432 223
Q ss_pred eEEEEecCCc-----ccccCCCCCCEEEE
Q 043990 590 FVFLLSSKAG-----GCGLNLIGGNRLVL 613 (911)
Q Consensus 590 ~v~LlStkag-----g~GLNL~~An~VIl 613 (911)
+++.+.... ...+++...+.||+
T Consensus 131 -iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 131 -IVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp -EEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred -EEEECHHHHHHHHHcCCccccccCEEEE
Confidence 455554332 23355666776665
No 257
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=24.87 E-value=46 Score=33.95 Aligned_cols=29 Identities=34% Similarity=0.477 Sum_probs=22.7
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 215 DemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
---|.|||..++.+...+...| .++|+|=
T Consensus 14 ~kGGvGKTt~a~~LA~~la~~g-------~~VlliD 42 (257)
T 1wcv_1 14 QKGGVGKTTTAINLAAYLARLG-------KRVLLVD 42 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred CCCCchHHHHHHHHHHHHHHCC-------CCEEEEE
Confidence 3458999999999999887765 4677764
No 258
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=24.66 E-value=44 Score=36.46 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=17.6
Q ss_pred cCCCceEEE-cCCCchHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSI 226 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaI 226 (911)
.|+++||+| -.+|+|||.++.
T Consensus 87 ~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 87 EGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp TTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCceeEEeecCCCCCCCEEee
Confidence 478899998 669999999874
No 259
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=24.64 E-value=62 Score=34.68 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990 212 ILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT 250 (911)
Q Consensus 212 ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~ 250 (911)
|..-.-|.|||..+.++...+...| .++|+|-
T Consensus 23 v~sgkGGvGKTTva~~LA~~lA~~G-------~rVllvD 54 (329)
T 2woo_A 23 FVGGKGGVGKTTTSCSLAIQMSKVR-------SSVLLIS 54 (329)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHTSS-------SCEEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCC-------CeEEEEE
Confidence 4566779999999999999887765 4677763
No 260
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=24.61 E-value=1.1e+02 Score=40.38 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=31.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSN 257 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~q 257 (911)
...++|+-+.|.|||..++.++......+ .+++++.-.....+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g-------~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDP 774 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEECTTSCCCH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcC-------CCeEEEeccchHHH
Confidence 34678999999999999999988876543 35777766544433
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=24.60 E-value=68 Score=34.95 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=29.6
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS 253 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s 253 (911)
.-.+|+-+.|+|||..|+.++......+ .++++|....
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g-------~~vlyid~E~ 101 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEH 101 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEeCCC
Confidence 4568899999999999999998876654 3577777643
No 262
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=24.60 E-value=43 Score=29.90 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=21.5
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHcCCCEE
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRERRYPYL 564 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~~gi~~~ 564 (911)
..+|+|..........+...|...|+.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~ 34 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQ 34 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEE
Confidence 35788888888888888888887776544
No 263
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=24.42 E-value=50 Score=35.05 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=19.8
Q ss_pred CceEEEcCCCchHHHHHHHHHHHH
Q 043990 209 HGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~l 232 (911)
++++|..++|+|||..+-++...+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 588999999999999887776543
No 264
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=24.38 E-value=44 Score=36.48 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=18.3
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 103 ~G~n~tifAYGqTGSGKTyTm~G 125 (355)
T 3lre_A 103 NGYNCTVLAYGATGAGKTHTMLG 125 (355)
T ss_dssp TTCCEEEEEECCTTSSHHHHHTB
T ss_pred CCCceEEEEeCCCCCCceeeecc
Confidence 578899998 6899999998753
No 265
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=24.27 E-value=58 Score=27.58 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=30.4
Q ss_pred CeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCC
Q 043990 537 DRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571 (911)
Q Consensus 537 ~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts 571 (911)
+++||+|+.-.........|...|+.+..|+|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888888999999999777888864
No 266
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=23.95 E-value=2.9e+02 Score=23.79 Aligned_cols=94 Identities=12% Similarity=-0.064 Sum_probs=50.0
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCC--CCCceEEEEecCCcccccCC--CCCCE
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDP--SKNEFVFLLSSKAGGCGLNL--IGGNR 610 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~--~~~~~v~LlStkagg~GLNL--~~An~ 610 (911)
.+-.+..++...+.+..+ ....+..+.++-.++...-..++...+.. .....+++++...-..-... .+|+.
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 355666666555555444 34567788888766544444555554432 12344666665432211222 23443
Q ss_pred EEEeCCCCCcchHHHHHHhhhhcC
Q 043990 611 LVLFDPDWNPANDKQAAARVWRDG 634 (911)
Q Consensus 611 VIl~Dp~WNPa~~~QAigR~~RiG 634 (911)
++ --|+++....+++.++.+.+
T Consensus 102 ~l--~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 102 YL--VKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp EE--ESSCCHHHHHHHHHHHHHHH
T ss_pred EE--eccCCHHHHHHHHHHHHhhh
Confidence 33 34778888888888776543
No 267
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=23.75 E-value=53 Score=34.18 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=26.0
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe--C-chhhHHHHH
Q 043990 216 DMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT--P-TSLVSNWEA 260 (911)
Q Consensus 216 emGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~--P-~sLl~qW~~ 260 (911)
--|.|||..++.+...+...| .++|+|= | ..-+..|..
T Consensus 13 KGGvGKTT~a~nLA~~La~~G-------~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 13 KGGAGKSTIAVHLVTALLYGG-------AKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp SSCTTHHHHHHHHHHHHHHTT-------CCEEEEECCTTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-------CcEEEEECCCCCCCHHHHhC
Confidence 358999999999999888765 3566653 3 334445543
No 268
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.74 E-value=47 Score=33.76 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHH
Q 043990 208 IHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 208 ~~G~ILADemGLGKTlqaIali~~l 232 (911)
..|.+|.-++|+|||..+-++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4688999999999998877776543
No 269
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=23.68 E-value=40 Score=29.13 Aligned_cols=37 Identities=5% Similarity=0.032 Sum_probs=31.9
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCC
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts 571 (911)
.+++|||+|..-.........|...|+++..|+|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4678999999887888889999999998888999754
No 270
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=23.54 E-value=42 Score=37.88 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=21.2
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~l 232 (911)
..+|.+|.-++|+|||..+-++...+
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 35688999999999999887776554
No 271
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=23.52 E-value=3.1e+02 Score=23.84 Aligned_cols=90 Identities=7% Similarity=-0.011 Sum_probs=48.3
Q ss_pred CCeEEEEEcchHHHHHHHHHHHH-cCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEe-cCCcccccCCCCCCEEEE
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRE-RRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLS-SKAGGCGLNLIGGNRLVL 613 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~-~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlS-tkagg~GLNL~~An~VIl 613 (911)
+-.+..+....+.+.. +.. ..+..+.++-.++...-..++...+.......+++++ ......-.... |+.+
T Consensus 39 g~~v~~~~~~~~al~~----l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~-~~~~-- 111 (138)
T 2b4a_A 39 GAEVTVHPSGSAFFQH----RSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIESSEH-NLSY-- 111 (138)
T ss_dssp TCEEEEESSHHHHHHT----GGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCCCSSS-CEEE--
T ss_pred CCEEEEeCCHHHHHHH----HHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHH-HHhe--
Confidence 4555555444444433 334 5677788887665444455666666533345566666 33221112222 3332
Q ss_pred eCCCCCcchHHHHHHhhhh
Q 043990 614 FDPDWNPANDKQAAARVWR 632 (911)
Q Consensus 614 ~Dp~WNPa~~~QAigR~~R 632 (911)
+--++++....+++.++.+
T Consensus 112 l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 112 LQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp EESSCCHHHHHHHHHHTCC
T ss_pred eeCCCCHHHHHHHHHHHHH
Confidence 3346788888888887765
No 272
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=23.42 E-value=1.2e+02 Score=29.47 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=25.9
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCch
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTS 253 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~s 253 (911)
-.+|.-+.|+|||..+..++..+...+ .+++++....
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~-------~~v~~~~~~~ 61 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDG-------DPCIYVTTEE 61 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHT-------CCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCC-------CeEEEEEccc
Confidence 356788999999998888876665443 3566666443
No 273
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=23.35 E-value=1.4e+02 Score=25.70 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=11.9
Q ss_pred cCCCEEEEeCCCCHHHHHHHHHhhc
Q 043990 559 RRYPYLRLDGTTSISKRQKLVNHFN 583 (911)
Q Consensus 559 ~gi~~~~LdGsts~~~R~~iv~~Fn 583 (911)
..+..+.+|-.++...-..++...+
T Consensus 45 ~~~dlii~D~~~p~~~g~~~~~~lr 69 (120)
T 3f6p_A 45 LQPDLILLDIMLPNKDGVEVCREVR 69 (120)
T ss_dssp TCCSEEEEETTSTTTHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3455555555555444444444443
No 274
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=23.35 E-value=3.1e+02 Score=24.68 Aligned_cols=49 Identities=16% Similarity=0.090 Sum_probs=35.4
Q ss_pred CCeEEEEEcc------hHHHHHHHHHHHHcCC-CEEEEeCCCCHHHHHHHHHhhcC
Q 043990 536 DDRIVLVSNY------TQTLDLFAQLCRERRY-PYLRLDGTTSISKRQKLVNHFND 584 (911)
Q Consensus 536 ~~KVIIFSq~------~~~ld~L~~~L~~~gi-~~~~LdGsts~~~R~~iv~~Fn~ 584 (911)
..+||||+.. =.......++|...|+ +|..++=....+-|+.+.+.-+.
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~ 74 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNW 74 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTC
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccC
Confidence 3799999864 3456777788888998 58888777776667666665544
No 275
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=23.35 E-value=70 Score=36.13 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ll~ 234 (911)
..++.+|.-+.|+|||..+-++...+..
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467899999999999999888777654
No 276
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=23.31 E-value=35 Score=34.98 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=21.2
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~l 232 (911)
...|.+|.-+.|+|||..+-++...+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34678899999999999888877654
No 277
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=23.21 E-value=3.1e+02 Score=26.83 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=51.9
Q ss_pred cchHHHH-HHHHHHHHhh-----cCCCeEEEEEcchHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHhhcCCC
Q 043990 517 LSGKMHV-LARLLGHLRQ-----RTDDRIVLVSNYTQTLDLFAQLCRER----RYPYLRLDGTTSISKRQKLVNHFNDPS 586 (911)
Q Consensus 517 ~S~Kl~~-L~~LL~~l~~-----~~~~KVIIFSq~~~~ld~L~~~L~~~----gi~~~~LdGsts~~~R~~iv~~Fn~~~ 586 (911)
.+||..+ +.-++..+.. ..+.++||.+.....+..+.+.+... ++.+..+.|+.+.......+ +.
T Consensus 72 GsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-- 146 (236)
T 2pl3_A 72 GSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---NN-- 146 (236)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---TT--
T ss_pred CCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---CC--
Confidence 4888764 3334444322 24678999999988877777776654 47888899987655443333 22
Q ss_pred CCceEEEEecCCcc------cccCCCCCCEEEE
Q 043990 587 KNEFVFLLSSKAGG------CGLNLIGGNRLVL 613 (911)
Q Consensus 587 ~~~~v~LlStkagg------~GLNL~~An~VIl 613 (911)
.+ +++.+....- ..+++...+.||+
T Consensus 147 ~~--iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 147 IN--ILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp CS--EEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred CC--EEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 23 4555543321 1355556665554
No 278
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=22.99 E-value=1.1e+02 Score=31.55 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=21.8
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 215 DDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 215 DemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
---|.|||..++.++..+...| .++|+|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G-------~rVlli 71 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN-------LKVLMI 71 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT-------CCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHhCC-------CeEEEE
Confidence 3669999999999998887665 356664
No 279
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=22.98 E-value=1.4e+02 Score=25.88 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCC
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts 571 (911)
.+++|||+|+.-.........|...|+.-..|+|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 5688999999888888888999999996678899865
No 280
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=22.89 E-value=1.2e+02 Score=26.61 Aligned_cols=30 Identities=7% Similarity=0.102 Sum_probs=19.8
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHcCCCEEE
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRERRYPYLR 565 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~ 565 (911)
..+|+|..........+...|...|+.+..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~ 36 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVG 36 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEE
Confidence 356777777777777777777766665443
No 281
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=22.80 E-value=4.8e+02 Score=26.21 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=55.4
Q ss_pred ccchHHHH-HHHHHHHHhh-----cCCCeEEEEEcchHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHhhcCC
Q 043990 516 ELSGKMHV-LARLLGHLRQ-----RTDDRIVLVSNYTQTLDLFAQLCRE----RRYPYLRLDGTTSISKRQKLVNHFNDP 585 (911)
Q Consensus 516 ~~S~Kl~~-L~~LL~~l~~-----~~~~KVIIFSq~~~~ld~L~~~L~~----~gi~~~~LdGsts~~~R~~iv~~Fn~~ 585 (911)
..|||..+ +.-++..+.. ..+.++||.+..+..+.-+...+.. .++.+..+.|+.........+.. +
T Consensus 100 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~ 176 (262)
T 3ly5_A 100 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN---G 176 (262)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH---C
T ss_pred CCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC---C
Confidence 34888754 4445554432 2467899999998877766666655 46788889998886554443322 1
Q ss_pred CCCceEEEEec-CC------cccccCCCCCCEEEE
Q 043990 586 SKNEFVFLLSS-KA------GGCGLNLIGGNRLVL 613 (911)
Q Consensus 586 ~~~~~v~LlSt-ka------gg~GLNL~~An~VIl 613 (911)
.+ ++++| .. ...++++.....||+
T Consensus 177 -~~---Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 177 -IN---IIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp -CS---EEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred -CC---EEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 23 44444 11 223466777776665
No 282
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=22.78 E-value=3.5e+02 Score=22.94 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=37.0
Q ss_pred CCeEEEEEc------chHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcC
Q 043990 536 DDRIVLVSN------YTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFND 584 (911)
Q Consensus 536 ~~KVIIFSq------~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~ 584 (911)
..+|+||+. +=.....+..+|...++.|..++=......+..+...+..
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 70 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW 70 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC
Confidence 457999985 3345778888899999999999887776667777666654
No 283
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.77 E-value=89 Score=27.23 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=35.0
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCC-cccccCC
Q 043990 536 DDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKA-GGCGLNL 605 (911)
Q Consensus 536 ~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStka-gg~GLNL 605 (911)
+.+|+|..........+...|...|+.+... .+.. ..++.+.....+ ++++.... +..|+.+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~---~~~~---~a~~~l~~~~~d--lvi~d~~l~~~~g~~~ 69 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLA---ADGV---DALELLGGFTPD--LMICDIAMPRMNGLKL 69 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEE---SCHH---HHHHHHTTCCCS--EEEECCC-----CHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEe---CCHH---HHHHHHhcCCCC--EEEEecCCCCCCHHHH
Confidence 5688888888888888888888887754432 2222 233444432333 45555543 3345544
No 284
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=22.53 E-value=1.2e+02 Score=26.18 Aligned_cols=27 Identities=7% Similarity=0.060 Sum_probs=17.2
Q ss_pred CeEEEEEcchHHHHHHHHHHHHcCCCE
Q 043990 537 DRIVLVSNYTQTLDLFAQLCRERRYPY 563 (911)
Q Consensus 537 ~KVIIFSq~~~~ld~L~~~L~~~gi~~ 563 (911)
.+|+|+.........+...|...|+.+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v 30 (126)
T 1dbw_A 4 YTVHIVDDEEPVRKSLAFMLTMNGFAV 30 (126)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCcEE
Confidence 466666666666666666666666543
No 285
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=22.30 E-value=39 Score=36.53 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=18.0
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm~G 100 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYTMEG 100 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTB
T ss_pred CCCEEEEEeECCCCCCCcEEEec
Confidence 578899997 6789999998753
No 286
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=22.16 E-value=4.3e+02 Score=26.04 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=55.8
Q ss_pred ccchHHHH-HHHHHHHHhh------cCCCeEEEEEcchHHHHHHHHHH----HHcCCCEEEEeCCCCHHHHHHHHHhhcC
Q 043990 516 ELSGKMHV-LARLLGHLRQ------RTDDRIVLVSNYTQTLDLFAQLC----RERRYPYLRLDGTTSISKRQKLVNHFND 584 (911)
Q Consensus 516 ~~S~Kl~~-L~~LL~~l~~------~~~~KVIIFSq~~~~ld~L~~~L----~~~gi~~~~LdGsts~~~R~~iv~~Fn~ 584 (911)
..+||..+ +.-++..+.. ..+.++||.+.....+..+.+.+ ...++.+..+.|+.+...+...+..
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 151 (242)
T 3fe2_A 75 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER--- 151 (242)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH---
T ss_pred CcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC---
Confidence 34899654 5555555542 13568999999887666554444 4558999999999987766555443
Q ss_pred CCCCceEEEEecCCc-----ccccCCCCCCEEEE
Q 043990 585 PSKNEFVFLLSSKAG-----GCGLNLIGGNRLVL 613 (911)
Q Consensus 585 ~~~~~~v~LlStkag-----g~GLNL~~An~VIl 613 (911)
..+ +++.+.... ...+++.....||+
T Consensus 152 -~~~--I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 -GVE--ICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp -CCS--EEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred -CCC--EEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 122 444443222 12345666666655
No 287
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=22.13 E-value=2.6e+02 Score=31.83 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=26.5
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P 251 (911)
-.+++-..|.|||-.+..++..+...| .+++||..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G-------~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKG-------WKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEec
Confidence 345667789999999999998877654 35677765
No 288
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=22.08 E-value=2e+02 Score=36.04 Aligned_cols=93 Identities=9% Similarity=0.003 Sum_probs=61.4
Q ss_pred ccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH----cCC----CEEEEeCCCCHHHHHHHHHhhcCCCC
Q 043990 516 ELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRE----RRY----PYLRLDGTTSISKRQKLVNHFNDPSK 587 (911)
Q Consensus 516 ~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~----~gi----~~~~LdGsts~~~R~~iv~~Fn~~~~ 587 (911)
..|||..++.-++..+.. .+.++||.+..+..+..+.+.+.. .++ .+..++|+++...+.+..+.+.. .
T Consensus 80 TGSGKTl~~lp~l~~~~~-~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~ 156 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLAL-KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--F 156 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHT-TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--C
T ss_pred CCCCHHHHHHHHHHHHhh-cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--C
Confidence 458998666666665554 578999999999877666665553 466 88999999998888777777765 2
Q ss_pred CceEEEEecCCcccccC-CCCCCEEEE
Q 043990 588 NEFVFLLSSKAGGCGLN-LIGGNRLVL 613 (911)
Q Consensus 588 ~~~v~LlStkagg~GLN-L~~An~VIl 613 (911)
+ +++.+....-.-+. |...+.||+
T Consensus 157 ~--IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 157 K--IVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp S--EEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred C--EEEEcHHHHHHHHHHhccCCEEEE
Confidence 3 45555433322222 445555554
No 289
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=22.07 E-value=1.8e+02 Score=25.10 Aligned_cols=20 Identities=10% Similarity=0.121 Sum_probs=11.9
Q ss_pred CCCCcchHHHHHHhhhhcCC
Q 043990 616 PDWNPANDKQAAARVWRDGQ 635 (911)
Q Consensus 616 p~WNPa~~~QAigR~~RiGQ 635 (911)
-|.++....+++.++.+.++
T Consensus 106 kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 106 KPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp SSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhcCC
Confidence 35566666666666665443
No 290
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=21.96 E-value=59 Score=33.72 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=21.2
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYTL 232 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~l 232 (911)
...+.+|.-++|+|||..+-++...+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999888776654
No 291
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.91 E-value=39 Score=37.68 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=18.4
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM~G 158 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTMDG 158 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTE
T ss_pred CCCceEEEEecCCCCCCeeEecC
Confidence 578899998 6799999998753
No 292
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.89 E-value=2.4e+02 Score=29.04 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.0
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHh
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLC 234 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~ 234 (911)
..+|.-+.|.|||..+-++...+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3899999999999998888877644
No 293
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=21.87 E-value=32 Score=37.80 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=17.7
Q ss_pred cCCCceEEE-cCCCchHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSI 226 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaI 226 (911)
.|+++||+| -.+|+|||.++.
T Consensus 77 ~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 77 DGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp TTCEEEEEEEECTTSSHHHHHT
T ss_pred cCCceEEEEECCCCCCCeEeec
Confidence 478899997 679999999875
No 294
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=21.71 E-value=82 Score=35.29 Aligned_cols=35 Identities=29% Similarity=0.217 Sum_probs=26.5
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhc-CCCCCCCCceEEEEeC
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQ-GFDGKPMVKKAIIVTP 251 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~-g~~~~p~~~~~LIV~P 251 (911)
-.+++-..|.|||-++..++..+..+ | +++++|.-
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G-------~kVllvd~ 137 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHK-------KKVLVVSA 137 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSC-------CCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC-------CeEEEEec
Confidence 44556678999999999999988776 5 35666654
No 295
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=21.63 E-value=36 Score=37.62 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.1
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.+++.
T Consensus 96 ~G~N~tifAYGqTGSGKTyTM~G 118 (388)
T 3bfn_A 96 EGQNASVLAYGPTGAGKTHTMLG 118 (388)
T ss_dssp TTCCEEEEEESCTTSSHHHHHTB
T ss_pred cCceeeEeeecCCCCCCCeEeec
Confidence 578899998 6799999998753
No 296
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=21.33 E-value=52 Score=34.20 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=20.5
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHH
Q 043990 207 GIHGCILADDMGLGKTLQSIALLYT 231 (911)
Q Consensus 207 ~~~G~ILADemGLGKTlqaIali~~ 231 (911)
..+|.+|.-+.|+|||..+-++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3568899999999999988777654
No 297
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=21.30 E-value=48 Score=29.03 Aligned_cols=37 Identities=5% Similarity=0.032 Sum_probs=31.1
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCCEEEEeCCCC
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~LdGsts 571 (911)
.++++||+|..-.........|...||..+.|.|++.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 4678999998877777888899999999888998754
No 298
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=21.25 E-value=99 Score=30.70 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=28.2
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIV 249 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV 249 (911)
+-.++.-..|-|||-.|+++......+| .+++|+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G-------~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG-------KNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT-------CCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEE
Confidence 4557778899999999999999988876 467777
No 299
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=21.23 E-value=79 Score=27.44 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHcCCC-EEEEeCCCC
Q 043990 535 TDDRIVLVSNYTQTLDLFAQLCRERRYP-YLRLDGTTS 571 (911)
Q Consensus 535 ~~~KVIIFSq~~~~ld~L~~~L~~~gi~-~~~LdGsts 571 (911)
.+++|||+|..-.........|...|+. +..|+|++.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4688999999877888888999999995 778899865
No 300
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=20.74 E-value=53 Score=36.31 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=17.9
Q ss_pred cCCCceEEE-cCCCchHHHHHHH
Q 043990 206 AGIHGCILA-DDMGLGKTLQSIA 227 (911)
Q Consensus 206 ~~~~G~ILA-DemGLGKTlqaIa 227 (911)
.|+++||+| -.+|+|||.++..
T Consensus 132 ~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 132 EGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp TTCEEEEEEESCTTSSHHHHHC-
T ss_pred cCCceEEEEecCCCCCCCeEecc
Confidence 467899998 5799999999766
No 301
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=20.71 E-value=1e+02 Score=26.47 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=14.7
Q ss_pred eEEEEEcchHHHHHHHHHHHHcCCCE
Q 043990 538 RIVLVSNYTQTLDLFAQLCRERRYPY 563 (911)
Q Consensus 538 KVIIFSq~~~~ld~L~~~L~~~gi~~ 563 (911)
+|+|+.........+...|...|+.+
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v 32 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFTV 32 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceE
Confidence 55555555555555666555555543
No 302
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=20.65 E-value=1.2e+02 Score=29.41 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=20.0
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHH
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLL 233 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll 233 (911)
+..+|.-+.|.|||..+-.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3568899999999998877776654
No 303
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=20.64 E-value=2.6e+02 Score=27.31 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=51.4
Q ss_pred ccchHHHH-HHHHHHHHhh-------cCCCeEEEEEcchHHHHHHHHHHHHc---CCCEEEEeCCCCHHHHHHHHHhhcC
Q 043990 516 ELSGKMHV-LARLLGHLRQ-------RTDDRIVLVSNYTQTLDLFAQLCRER---RYPYLRLDGTTSISKRQKLVNHFND 584 (911)
Q Consensus 516 ~~S~Kl~~-L~~LL~~l~~-------~~~~KVIIFSq~~~~ld~L~~~L~~~---gi~~~~LdGsts~~~R~~iv~~Fn~ 584 (911)
..+||..+ +.-++..+.. ..+.++||.+..+..+..+.+.+... ++....+.|+.+...+...+ ..
T Consensus 66 TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 142 (228)
T 3iuy_A 66 TGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---SK 142 (228)
T ss_dssp TTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---HS
T ss_pred CCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---cC
Confidence 34889653 4444444321 14678999999999888888888774 77888898887755443333 22
Q ss_pred CCCCceEEEEecCCc-----ccccCCCCCCEEEE
Q 043990 585 PSKNEFVFLLSSKAG-----GCGLNLIGGNRLVL 613 (911)
Q Consensus 585 ~~~~~~v~LlStkag-----g~GLNL~~An~VIl 613 (911)
..+ +++.+.... ...+++...+.||+
T Consensus 143 -~~~--iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 143 -GVD--IIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp -CCS--EEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred -CCC--EEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 123 444443222 22455666666665
No 304
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.61 E-value=3.3e+02 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=11.9
Q ss_pred CeEEEEEcchHHHHHHHHHHHHcCC
Q 043990 537 DRIVLVSNYTQTLDLFAQLCRERRY 561 (911)
Q Consensus 537 ~KVIIFSq~~~~ld~L~~~L~~~gi 561 (911)
.+|+|..........+...|...|+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~ 30 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGY 30 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3444444444444444444444444
No 305
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=20.48 E-value=1.6e+02 Score=25.79 Aligned_cols=16 Identities=6% Similarity=0.123 Sum_probs=8.4
Q ss_pred CCCcchHHHHHHhhhh
Q 043990 617 DWNPANDKQAAARVWR 632 (911)
Q Consensus 617 ~WNPa~~~QAigR~~R 632 (911)
+.++....+++.++.+
T Consensus 110 p~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 110 PWDNQKLLETLLNAAS 125 (140)
T ss_dssp SCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4455555555555544
No 306
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=20.38 E-value=1e+02 Score=27.29 Aligned_cols=16 Identities=0% Similarity=-0.045 Sum_probs=7.8
Q ss_pred CCCcchHHHHHHhhhh
Q 043990 617 DWNPANDKQAAARVWR 632 (911)
Q Consensus 617 ~WNPa~~~QAigR~~R 632 (911)
|.++....+++.++.+
T Consensus 105 P~~~~~l~~~i~~~~~ 120 (142)
T 2qxy_A 105 PFRLDYLLERVKKIIS 120 (142)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3445555555555444
No 307
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=20.26 E-value=2.3e+02 Score=27.54 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=37.4
Q ss_pred ccchHHHH-HHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHHH----cCCCEEEEeCCCCHHHH
Q 043990 516 ELSGKMHV-LARLLGHLRQ-RTDDRIVLVSNYTQTLDLFAQLCRE----RRYPYLRLDGTTSISKR 575 (911)
Q Consensus 516 ~~S~Kl~~-L~~LL~~l~~-~~~~KVIIFSq~~~~ld~L~~~L~~----~gi~~~~LdGsts~~~R 575 (911)
..+||... +.-++..+.. ..+.++||.+.....+..+.+.+.. .++.+..+.|+.+..++
T Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (224)
T 1qde_A 60 SGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 125 (224)
T ss_dssp TTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------
T ss_pred CCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH
Confidence 34899765 5556665543 2356899999998887777666654 37888899998775443
No 308
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=20.20 E-value=98 Score=35.12 Aligned_cols=47 Identities=9% Similarity=-0.072 Sum_probs=33.3
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHH
Q 043990 210 GCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262 (911)
Q Consensus 210 G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei 262 (911)
-.+|+-.+|.|||.-++.++.....+. ..+++++.--.-..+....+
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~------g~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAM------GKKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTS------CCCEEEEESSSCHHHHHHHH
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhc------CCcEEEEeccCCHHHHHHHH
Confidence 468899999999999999988775441 23688887654444444443
No 309
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=20.06 E-value=87 Score=34.69 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=28.3
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchh
Q 043990 209 HGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSL 254 (911)
Q Consensus 209 ~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sL 254 (911)
..+++.-.+|+|||...-.++..++..+ .+++|+=|+.-
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g-------~~viv~Dpkge 92 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRG-------DRMVIVDPNGD 92 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTT-------CEEEEEEETTH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC-------CcEEEEeCCCc
Confidence 3557778899999998666666666654 36788888743
No 310
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=20.02 E-value=23 Score=41.77 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCCCceEEEEeCchhhHHHHHHHHHHhC
Q 043990 219 LGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVG 267 (911)
Q Consensus 219 LGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P~sLl~qW~~Ei~k~~~ 267 (911)
..+-..|++.|..++.++. -+|.+++..|...+-.|+.
T Consensus 436 ~~~RqaAaaYLaSflARAk-----------~v~~~~v~~vl~~L~~wl~ 473 (649)
T 3tj1_A 436 AEKKIKSLQYLGSYIARAK-----------KLSRTQIIFVASYLTSWLN 473 (649)
T ss_dssp HHHHHHHHHHHHHHHHHBT-----------TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHHHH
Confidence 3556667888888887752 3688888888888888875
Done!