BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>043997
MTSEGNFSQPAIPRFVGHYDHWSMLMDNFMRSKEYWGLVETGYDEPASGSVLMDAHQKMT
DELKLKDLKVKNYLFQAIDRTILDTIRKKDTAKEIWDAMKKKFEGNARVKKSQLQALRRE
FETLEMKSGEEDVKIVEKILRTLTEKFNDIVCSIEESKDIDSLSEEAEVKEDEVKTLLGA
EEEEEAGKFAEHWTTSRKGSSNCHSTWKAQDVSFRERVDCNN

High Scoring Gene Products

Symbol, full name Information P value
AT1G48720 protein from Arabidopsis thaliana 2.5e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043997
        (222 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2008174 - symbol:AT1G48720 "AT1G48720" species...   102  2.5e-05   1


>TAIR|locus:2008174 [details] [associations]
            symbol:AT1G48720 "AT1G48720" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002684 GO:GO:0003964 InterPro:IPR025314
            Pfam:PF13961 EMBL:BT024646 EMBL:DQ446342 EMBL:AK175404
            EMBL:AK229685 IPI:IPI00817983 RefSeq:NP_175304.1 UniGene:At.64447
            EnsemblPlants:AT1G48720.1 GeneID:841294 KEGG:ath:AT1G48720
            TAIR:At1g48720 eggNOG:NOG305210 InParanoid:Q682G3 OMA:SCSSHER
            PhylomeDB:Q682G3 ProtClustDB:CLSN2682435 Genevestigator:Q682G3
            Uniprot:Q682G3
        Length = 97

 Score = 102 (41.0 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 23/89 (25%), Positives = 45/89 (50%)

Query:     7 FSQPAIPRFVGHYDHWSMLMDNFMRSKEYWGLVETGYDEPAS-GSVLMDAHQKMTDELKL 65
             F  P + +   +YD+WS+ M   + + + W +VE G+ EP + GS+       + D  K 
Sbjct:     8 FQVPVLTK--SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRK- 64

Query:    66 KDLKVKNYLFQAIDRTILDTIRKKDTAKE 94
             +D K    ++Q +D    + + +  +AK+
Sbjct:    65 RDKKALCLIYQGLDEDTFEKVVEATSAKD 93


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       211   0.00081  112 3  11 23  0.41    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.47u 0.14s 25.61t   Elapsed:  00:00:01
  Total cpu time:  25.47u 0.14s 25.61t   Elapsed:  00:00:01
  Start:  Sat May 11 03:48:38 2013   End:  Sat May 11 03:48:39 2013

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