BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043997
         (222 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
          Length = 1056

 Score = 28.1 bits (61), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 43  YDEPASGSVLMDAHQKMTDELKLKDLKVKNYLFQAIDRTILDTI 86
           +DEP SG ++  AH +   +L + D+K  N + ++  + IL+ I
Sbjct: 203 FDEP-SGYIIKSAHSEEIQQLSVFDIKEGNVVIESRQKLILEGI 245


>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
 pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
 pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
          Length = 854

 Score = 27.7 bits (60), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 90  DTAKEIWDAMKKKFEGNARVKKSQLQALRREFETLEMKSGEEDVKIVEKILRTLTEKFND 149
           ++A E  DA+++K        K QL+  R   +  +    +E +K +E  +  LTE+   
Sbjct: 397 ESAPEEIDALERK--------KLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAK 448

Query: 150 IVCSIEESKDIDSLSEEAEVKEDEVK 175
           +    E  ++I     EA+ + DEV+
Sbjct: 449 LRAEWEREREILRKLREAQHRLDEVR 474


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,249,163
Number of Sequences: 62578
Number of extensions: 231904
Number of successful extensions: 536
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 27
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)