BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043997
         (222 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6FKB4|EIS1_CANGA Eisosome protein 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138
           / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=EIS1 PE=3 SV=1
          Length = 885

 Score = 33.1 bits (74), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 71  KNYLFQAIDRTILDTIRKKDTAKEIWDAMKKKFEGNARVKKSQLQALRREFETLE----M 126
           KN L     R  L+    KD A++ +D M KK +     KK QL+A ++  E L+    M
Sbjct: 437 KNVLEVNSKRIALEKQEAKDAAQKKYDEMIKKMDETVAEKKKQLEAAKQRLEDLQEEMNM 496

Query: 127 KSGEEDVKIVEKI 139
           K G +D K+ E++
Sbjct: 497 KLGMQDQKVEEEL 509


>sp|O29622|SYI_ARCFU Isoleucine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC
           49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
           GN=ileS PE=3 SV=1
          Length = 1018

 Score = 31.6 bits (70), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 8/77 (10%)

Query: 117 LRREFETLEMKSGEEDV-KIVEKILRTLTEKFNDIVCSIEESKDIDSLSEEAEVKEDEVK 175
           LR     L ++SG E V K VE +  T+  +     C++++ + +DS  +E E+K +   
Sbjct: 812 LRWPLRELVIESGSEKVRKAVEMLEETILSQ-----CNVKQVRVVDSFEKEIEIKPN--Y 864

Query: 176 TLLGAEEEEEAGKFAEH 192
             +G   +E+AG+FA++
Sbjct: 865 KYIGPLLKEKAGEFAKY 881


>sp|Q51464|FLIG_PSEAE Flagellar motor switch protein FliG OS=Pseudomonas aeruginosa
           (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
           GN=fliG PE=3 SV=2
          Length = 338

 Score = 30.8 bits (68), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 10/114 (8%)

Query: 70  VKNYLFQAIDRTILDTIRK--KDTAKEIWDAMKKKFEGNARVKKSQLQALRREFET---- 123
           + NYL  +I+  ++D+IR+  +D + +I D M   F+  A V    +QAL RE  +    
Sbjct: 208 IMNYLDSSIEGQLMDSIREVDEDLSGQIEDLM-FVFDNLADVDDRGIQALLREVSSDVLV 266

Query: 124 LEMKSGEEDVKIVEKILRTLTEKFNDIVCSIEESKDIDSLSEEAEVKEDEVKTL 177
           L +K  +E ++  EK+ + ++++  +++    E+K    +S E E  + E+ T+
Sbjct: 267 LALKGSDEAIR--EKVFKNMSKRAAELLRDDLEAKGPVRVS-EVEGAQKEILTI 317


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.128    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,872,984
Number of Sequences: 539616
Number of extensions: 3456317
Number of successful extensions: 14394
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 456
Number of HSP's that attempted gapping in prelim test: 13982
Number of HSP's gapped (non-prelim): 829
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)