Query 043998
Match_columns 101
No_of_seqs 103 out of 317
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 18:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_H RPL10, 60S ribosomal pr 100.0 4.1E-34 1.4E-38 220.8 6.2 83 16-99 111-193 (215)
2 3j0l_J Ribosomal protein L10; 100.0 4.9E-34 1.7E-38 220.8 1.2 83 16-99 109-191 (219)
3 3iz5_I 60S ribosomal protein L 100.0 6.3E-34 2.2E-38 220.8 -5.5 83 16-99 111-193 (224)
4 2zkr_h 60S ribosomal protein L 100.0 1.3E-30 4.3E-35 201.1 4.2 84 15-99 110-193 (214)
5 2pa2_A 60S ribosomal protein L 100.0 2.4E-29 8.1E-34 185.6 5.8 73 15-88 79-151 (151)
6 3j21_N 50S ribosomal protein L 99.8 3.5E-22 1.2E-26 151.0 3.9 62 16-78 108-171 (181)
7 1vq8_H 50S ribosomal protein L 99.8 5.4E-21 1.9E-25 143.3 4.7 62 15-77 108-169 (171)
8 1ffk_F Ribosomal protein L10E; 99.8 1.9E-19 6.6E-24 133.3 3.9 58 17-77 98-155 (157)
9 3r8s_M 50S ribosomal protein L 99.6 3.1E-16 1.1E-20 113.3 3.9 59 14-75 76-134 (136)
10 2ftc_I Mitochondrial ribosomal 99.5 1.3E-14 4.3E-19 102.4 3.7 55 14-70 64-118 (118)
11 3bbo_O Ribosomal protein L16; 99.5 1.3E-14 4.5E-19 104.5 2.2 58 14-74 77-134 (135)
12 2zjr_J 50S ribosomal protein L 99.3 2.2E-13 7.7E-18 98.9 0.3 54 19-75 81-136 (142)
13 2dsj_A Pyrimidine-nucleoside ( 74.7 3.3 0.00011 34.1 4.3 28 34-61 379-406 (423)
14 1brw_A PYNP, protein (pyrimidi 74.5 3.2 0.00011 34.1 4.2 31 34-65 387-417 (433)
15 3cbz_A Dishevelled-2; PDZ doma 65.1 12 0.00042 23.6 4.7 42 34-76 51-95 (108)
16 3h5q_A PYNP, pyrimidine-nucleo 63.6 6.3 0.00021 32.5 3.8 28 34-61 390-417 (436)
17 1uou_A Thymidine phosphorylase 61.7 7 0.00024 32.6 3.7 28 34-61 422-450 (474)
18 2tpt_A Thymidine phosphorylase 61.2 4.2 0.00014 33.5 2.3 31 34-65 392-423 (440)
19 1wi4_A Synip, syntaxin binding 61.1 16 0.00054 23.3 4.7 42 34-75 59-103 (109)
20 2ns1_B Nitrogen regulatory pro 58.4 12 0.0004 24.7 3.8 43 39-81 62-105 (116)
21 3e17_A Tight junction protein 58.3 11 0.00039 22.9 3.5 39 34-76 39-80 (88)
22 2eg2_A Nitrogen regulatory pro 58.3 21 0.0007 23.2 4.9 44 39-82 58-102 (112)
23 3ncq_A Nitrogen regulatory pro 57.5 22 0.00076 24.0 5.1 38 39-76 58-96 (119)
24 2gw8_A PII signal transduction 57.3 13 0.00044 24.4 3.8 42 40-81 61-103 (114)
25 2fcf_A Multiple PDZ domain pro 56.9 24 0.00083 21.5 4.9 39 34-76 57-98 (103)
26 2j9c_A GLNK1, hypothetical nit 55.6 14 0.00047 24.5 3.8 41 39-79 60-101 (119)
27 2gzv_A PRKCA-binding protein; 55.5 27 0.00094 22.4 5.2 41 34-78 68-111 (114)
28 4aff_A Nitrogen regulatory pro 54.2 26 0.0009 23.4 5.1 38 40-77 59-97 (116)
29 1uep_A Membrane associated gua 51.2 24 0.00081 21.9 4.2 28 34-61 52-82 (103)
30 2qg1_A Multiple PDZ domain pro 50.9 37 0.0013 20.2 5.1 40 34-77 47-89 (92)
31 4amh_A Disks large homolog 1; 50.7 37 0.0013 21.2 5.1 40 34-77 50-92 (106)
32 3pkz_A Recombinase SIN; small 50.6 41 0.0014 21.8 5.4 43 46-93 10-52 (124)
33 3kks_A Integrase, IN; beta-str 50.5 16 0.00055 22.9 3.3 51 42-96 29-79 (152)
34 3egg_C Spinophilin; PP1, serin 49.4 26 0.00089 24.5 4.6 28 34-61 129-159 (170)
35 3mhy_A PII-like protein PZ; PI 47.5 36 0.0012 22.3 4.8 38 39-76 58-96 (112)
36 1hwu_A PII protein; herbaspiri 46.6 29 0.00098 22.4 4.2 43 39-81 58-101 (112)
37 2e7k_A Maguk P55 subfamily mem 46.5 41 0.0014 20.4 4.7 38 34-75 47-86 (91)
38 3o46_A Maguk P55 subfamily mem 46.5 21 0.00072 21.6 3.3 29 34-62 46-77 (93)
39 2yt7_A Amyloid beta A4 precurs 46.1 28 0.00094 21.5 3.9 32 29-61 51-85 (101)
40 2dc2_A GOPC, golgi associated 45.7 18 0.00061 22.6 2.9 42 31-77 51-95 (103)
41 2iwq_A Multiple PDZ domain pro 45.7 35 0.0012 22.2 4.5 38 34-75 77-117 (123)
42 2q5w_E Molybdopterin-convertin 45.6 20 0.00067 25.4 3.4 48 12-60 60-111 (149)
43 4e34_A Golgi-associated PDZ an 45.3 21 0.0007 21.2 3.1 29 32-61 45-76 (87)
44 2wp4_A Molybdopterin-convertin 45.0 20 0.0007 25.3 3.4 47 13-60 69-119 (147)
45 1fm0_E Molybdopterin convertin 44.2 21 0.00073 25.2 3.4 48 12-60 62-113 (150)
46 2o66_A PII protein; regulation 44.0 26 0.00089 24.1 3.8 41 39-79 71-112 (135)
47 2ejy_A 55 kDa erythrocyte memb 44.0 25 0.00086 22.3 3.5 28 34-61 54-84 (97)
48 4ap8_A Molybdopterin synthase 43.2 22 0.00076 24.9 3.4 29 31-60 88-116 (135)
49 2fne_A Multiple PDZ domain pro 42.5 58 0.002 20.8 5.2 39 34-76 71-112 (117)
50 3bzq_A Nitrogen regulatory pro 42.4 47 0.0016 21.4 4.7 44 39-82 60-104 (114)
51 2o2t_A Multiple PDZ domain pro 41.8 57 0.0019 20.4 5.0 39 34-76 67-109 (117)
52 2awx_A Synapse associated prot 41.6 50 0.0017 20.3 4.6 40 34-77 51-93 (105)
53 2dm8_A INAD-like protein; PDZ 40.6 53 0.0018 20.4 4.6 39 34-76 61-102 (116)
54 2omd_A Molybdopterin-convertin 40.1 20 0.00067 25.5 2.7 55 12-67 66-128 (154)
55 1vfj_A Nitrogen regulatory pro 39.8 42 0.0014 21.8 4.2 42 40-81 59-101 (116)
56 1kwa_A Hcask/LIN-2 protein; PD 39.7 46 0.0016 20.1 4.1 38 34-75 43-83 (88)
57 2cs5_A Tyrosine-protein phosph 39.6 65 0.0022 20.2 5.0 43 34-76 60-105 (119)
58 2rcz_A Tight junction protein 39.5 53 0.0018 18.7 4.6 38 34-75 39-79 (81)
59 3rpf_A Molybdopterin synthase 39.2 27 0.00092 24.8 3.3 30 30-60 81-110 (148)
60 3soe_A Membrane-associated gua 39.1 41 0.0014 22.4 4.1 51 29-82 45-98 (113)
61 1wha_A KIAA0147 protein, scrib 38.8 47 0.0016 20.5 4.1 39 34-76 56-97 (105)
62 2q9v_A Membrane-associated gua 38.5 29 0.001 20.6 3.0 29 34-62 45-76 (90)
63 2db5_A INAD-like protein; PDZ 38.4 46 0.0016 21.3 4.2 39 34-76 72-114 (128)
64 1wg6_A Hypothetical protein (r 38.2 21 0.00074 23.3 2.5 28 34-61 73-103 (127)
65 4dn9_A Antibiotic biosynthesis 38.0 65 0.0022 21.1 4.9 36 40-75 26-61 (122)
66 3b76_A E3 ubiquitin-protein li 37.6 31 0.0011 22.4 3.2 28 34-61 71-101 (118)
67 4ep8_B Urease subunit beta; al 37.0 12 0.00041 25.7 1.2 25 16-43 55-79 (101)
68 3mhy_A PII-like protein PZ; PI 36.7 26 0.0009 23.0 2.8 32 41-74 3-34 (112)
69 1wif_A RSGI RUH-020, riken cDN 36.6 39 0.0013 22.7 3.7 46 27-76 61-110 (126)
70 3nfk_A Tyrosine-protein phosph 36.5 73 0.0025 19.5 5.4 28 35-62 63-93 (107)
71 3gsl_A Disks large homolog 4; 36.3 48 0.0016 21.9 4.1 39 34-76 148-189 (196)
72 3l3u_A POL polyprotein; DNA in 36.3 49 0.0017 21.2 4.0 51 42-96 36-86 (163)
73 2opg_A Multiple PDZ domain pro 36.1 69 0.0024 19.2 4.5 38 34-75 48-88 (98)
74 2r4h_A Membrane-associated gua 35.9 74 0.0025 19.9 4.8 38 34-75 67-107 (112)
75 2ehr_A INAD-like protein; PDZ 35.3 53 0.0018 20.6 4.0 38 34-75 68-108 (117)
76 1v62_A KIAA1719 protein; struc 35.2 30 0.001 22.1 2.8 39 34-76 60-101 (117)
77 2byg_A Channel associated prot 35.0 53 0.0018 21.0 4.0 38 34-75 72-112 (117)
78 2dlu_A INAD-like protein; PDZ 34.9 63 0.0022 20.0 4.3 38 34-75 56-96 (111)
79 3l7p_A Putative nitrogen regul 34.8 45 0.0015 22.2 3.7 39 39-77 61-100 (115)
80 1nf3_C PAR-6B; semi-CRIB motif 34.2 36 0.0012 22.0 3.1 38 34-75 83-123 (128)
81 2vsp_A PDZ domain-containing p 34.1 35 0.0012 20.4 2.9 39 35-77 45-86 (91)
82 2dkr_A LIN-7 homolog B; LIN-7B 34.0 74 0.0025 18.8 4.7 38 34-75 48-88 (93)
83 1um1_A KIAA1849 protein, RSGI 33.9 62 0.0021 20.0 4.1 39 34-76 54-95 (110)
84 1ueq_A Membrane associated gua 33.6 45 0.0015 21.3 3.5 42 34-77 62-106 (123)
85 3ncq_A Nitrogen regulatory pro 33.0 49 0.0017 22.2 3.7 32 41-74 3-34 (119)
86 3f9k_A Integrase; protein-prot 32.7 92 0.0031 21.1 5.2 46 44-93 88-133 (210)
87 3t9z_A GLNK3, nitrogen regulat 32.4 70 0.0024 21.4 4.4 38 39-76 58-96 (118)
88 2qbw_A PDZ-fibronectin fusion 32.1 81 0.0028 21.2 4.8 44 28-75 34-80 (195)
89 3hpk_A Protein interacting wit 31.9 50 0.0017 21.0 3.5 41 34-78 63-106 (125)
90 2eei_A PDZ domain-containing p 31.7 80 0.0027 19.2 4.4 42 34-79 49-93 (106)
91 1q7x_A PDZ2B domain of PTP-BAS 31.5 41 0.0014 20.8 3.0 39 34-76 60-101 (108)
92 2jil_A GRIP1 protein, glutamat 31.5 46 0.0016 20.0 3.1 38 34-76 50-91 (97)
93 1cxq_A Avian sarcoma virus int 31.4 25 0.00086 22.8 2.0 38 44-81 44-81 (162)
94 3ce8_A Putative PII-like nitro 31.2 59 0.002 22.3 3.9 39 38-78 77-115 (120)
95 2f06_A Conserved hypothetical 31.0 21 0.0007 23.4 1.5 29 38-68 110-138 (144)
96 2ego_A General receptor for ph 30.5 50 0.0017 20.0 3.2 27 35-61 55-84 (96)
97 1uew_A Membrane associated gua 30.3 1E+02 0.0034 19.2 4.9 27 34-60 61-90 (114)
98 2fe5_A Presynaptic protein SAP 30.1 88 0.003 18.5 4.7 28 34-61 51-81 (94)
99 2iwo_A Multiple PDZ domain pro 29.9 78 0.0027 20.3 4.2 39 34-76 71-112 (120)
100 2g5m_B Neurabin-2; spinophilin 29.9 50 0.0017 20.5 3.2 39 34-76 53-94 (113)
101 3qj7_A TS, tsase, thymidylate 29.7 46 0.0016 25.8 3.5 44 41-87 204-247 (264)
102 4ac7_B Urease subunit beta; hy 29.6 20 0.0007 25.5 1.3 23 18-43 63-85 (126)
103 4ubp_B Protein (urease (chain 29.6 20 0.0007 25.5 1.3 23 18-43 63-85 (126)
104 3cyy_A Tight junction protein 29.5 56 0.0019 19.3 3.2 39 34-76 41-82 (92)
105 2dmz_A INAD-like protein; PDZ 29.0 65 0.0022 20.5 3.7 40 34-77 64-106 (129)
106 1wf8_A Neurabin-I; PDZ domain, 28.8 45 0.0016 20.6 2.8 38 34-75 58-98 (107)
107 1c0m_A Protein (integrase); HI 28.6 34 0.0012 24.1 2.4 39 44-82 43-81 (238)
108 3ilx_A First ORF in transposon 28.6 95 0.0032 20.8 4.6 50 40-93 5-58 (143)
109 2d92_A INAD-like protein; PDZ 28.2 82 0.0028 19.5 4.0 29 34-62 62-93 (108)
110 3axa_A Afadin, nectin-3, prote 28.1 59 0.002 19.9 3.3 39 34-76 56-97 (106)
111 1ofc_X ISWI protein; nuclear p 28.1 30 0.001 27.4 2.2 17 76-92 107-123 (304)
112 2kom_A Partitioning defective 27.8 60 0.0021 20.8 3.4 28 34-61 76-106 (121)
113 2i1n_A Discs, large homolog 3; 27.5 70 0.0024 19.4 3.5 39 34-76 52-93 (102)
114 2daz_A INAD-like protein; PDZ 27.4 73 0.0025 20.2 3.7 40 34-77 69-111 (124)
115 2he4_A Na(+)/H(+) exchange reg 27.3 1E+02 0.0034 18.2 4.5 37 35-75 46-85 (90)
116 2d90_A PDZ domain containing p 26.9 1.1E+02 0.0038 18.5 5.6 40 35-78 48-90 (102)
117 2pa1_A PDZ and LIM domain prot 26.8 68 0.0023 18.8 3.3 39 34-76 43-84 (87)
118 4f3q_A Transcriptional regulat 26.7 1.3E+02 0.0046 22.9 5.6 47 41-89 173-219 (247)
119 1mw7_A Hypothetical protein HP 26.6 1.4E+02 0.0047 22.7 5.7 49 40-90 171-219 (240)
120 2wkb_A Macrophage migration in 26.5 90 0.0031 20.2 4.1 71 14-84 21-114 (125)
121 3r0h_A INAD, inactivation-NO-a 26.3 96 0.0033 20.9 4.3 38 34-75 154-194 (206)
122 3i4w_A Disks large homolog 4; 25.6 63 0.0022 19.5 3.0 38 34-75 53-93 (104)
123 2v90_A PDZ domain-containing p 24.7 78 0.0027 18.9 3.3 39 35-77 48-89 (96)
124 2i04_A Membrane-associated gua 24.7 39 0.0013 19.8 1.9 28 34-61 43-73 (85)
125 3lnn_A Membrane fusion protein 24.3 66 0.0023 23.8 3.4 15 34-48 78-92 (359)
126 1p1d_A PDZ45, glutamate recept 24.2 78 0.0027 21.5 3.6 39 34-76 153-194 (196)
127 2d5d_A Methylmalonyl-COA decar 24.2 55 0.0019 18.6 2.4 15 34-48 26-40 (74)
128 1ujd_A KIAA0559 protein; PDZ d 24.2 1.3E+02 0.0043 18.9 4.4 39 34-76 67-108 (117)
129 4dq1_A TS, tsase, thymidylate 24.2 85 0.0029 25.1 4.2 49 36-87 253-304 (321)
130 3uj3_X DNA-invertase; helix-tu 24.0 43 0.0015 23.0 2.2 42 46-93 10-51 (193)
131 1lfp_A Hypothetical protein AQ 24.0 2E+02 0.0069 22.0 6.2 49 39-89 168-217 (249)
132 4gy7_A Urease; JACK bean, hydr 23.6 1.1E+02 0.0039 26.7 5.2 71 20-91 184-283 (840)
133 1vf7_A Multidrug resistance pr 23.6 43 0.0015 25.4 2.3 29 34-62 64-94 (369)
134 1dcz_A Transcarboxylase 1.3S s 23.4 58 0.002 18.8 2.5 15 34-48 29-43 (77)
135 2kpk_A Membrane-associated gua 23.4 41 0.0014 21.8 1.9 41 34-77 61-105 (129)
136 2kv8_A RGS12, regulator of G-p 23.0 1.1E+02 0.0037 17.7 3.6 39 34-76 40-81 (83)
137 2y9y_A Imitation switch protei 22.9 32 0.0011 28.1 1.5 17 76-92 120-136 (374)
138 3ne5_B Cation efflux system pr 22.7 63 0.0022 25.1 3.1 26 34-61 143-168 (413)
139 1i16_A Interleukin 16, LCF; cy 22.6 62 0.0021 21.0 2.7 40 34-76 75-117 (130)
140 2h7a_A Hypothetical protein YC 22.6 85 0.0029 21.7 3.4 40 13-63 37-82 (110)
141 1qav_A Alpha-1 syntrophin (res 22.2 1.3E+02 0.0044 17.7 4.1 28 34-61 48-78 (90)
142 3m05_A Uncharacterized protein 22.0 64 0.0022 22.0 2.7 33 40-75 7-39 (114)
143 1vb7_A PDZ and LIM domain 2; P 21.9 95 0.0033 18.6 3.3 39 34-76 47-88 (94)
144 1zhv_A Hypothetical protein AT 21.6 33 0.0011 23.8 1.2 24 44-67 104-127 (134)
145 1wh1_A KIAA1095 protein; PDZ d 21.6 67 0.0023 20.5 2.6 39 34-76 66-106 (124)
146 2k32_A A; NMR {Campylobacter j 21.2 36 0.0012 21.5 1.2 14 34-47 22-35 (116)
147 2eno_A Synaptojanin-2-binding 21.2 1.3E+02 0.0044 18.9 4.0 28 34-61 65-95 (120)
148 1z6h_A Biotin/lipoyl attachmen 21.1 70 0.0024 18.2 2.4 15 34-48 20-34 (72)
149 1ufx_A KIAA1526 protein; PDZ d 21.0 40 0.0014 21.2 1.4 29 34-62 50-81 (103)
150 1x6d_A Interleukin-16; PDZ dom 20.6 34 0.0012 21.6 1.0 29 34-62 60-91 (119)
151 2os5_A Acemif; macrophage migr 20.3 1.7E+02 0.0059 18.4 4.6 70 15-84 22-114 (119)
152 1j2q_H Proteasome beta subunit 20.2 1.6E+02 0.0056 20.1 4.6 42 52-93 155-199 (202)
153 3qga_A UREA2, fusion of urease 20.0 38 0.0013 26.1 1.3 21 19-42 163-183 (225)
154 1uhp_A Hypothetical protein KI 20.0 1.6E+02 0.0055 17.9 4.5 39 34-76 59-100 (107)
No 1
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=100.00 E-value=4.1e-34 Score=220.76 Aligned_cols=83 Identities=31% Similarity=0.496 Sum_probs=79.9
Q ss_pred chHHHhhhcCCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHHHHHcCc
Q 043998 16 SVIQRQQSNQSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWKSENR 95 (101)
Q Consensus 16 lq~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~~~~e~~ 95 (101)
||+|||.+||+|.|+|| ||++||+||+|+++++|.++|+|||++|++|||++|+|+++++||||+|+++||++|++||+
T Consensus 111 l~tgM~~akGkp~gwvA-rVk~Gqilfei~g~~~~~~~A~eALr~A~~KlP~~tkiv~~~kwgft~~~~~~~~~~~~~~~ 189 (215)
T 4a17_H 111 LQSGMRGAFGKALGKAA-RVDIGSILFSVRVKEPHVKYAIDALTRAKAKFPGRQKVVTSQKWGFTKLTRAQYSRLRNQKK 189 (215)
T ss_dssp --CTTSCCCCEEEEEEE-EECTTCEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESBCTTSSSBHHHHHHHHHTTC
T ss_pred hhccccCCCCCCCeEEE-EEcCCCEEEEEEecCCCHHHHHHHHHHHhhhCCCceEEEEccccCCCccCHHHHHHHHHCCe
Confidence 69999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 043998 96 MSWS 99 (101)
Q Consensus 96 l~~~ 99 (101)
|+|.
T Consensus 190 l~~d 193 (215)
T 4a17_H 190 LVTD 193 (215)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9874
No 2
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=99.97 E-value=4.9e-34 Score=220.79 Aligned_cols=83 Identities=34% Similarity=0.535 Sum_probs=80.0
Q ss_pred chHHHhhhcCCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHHHHHcCc
Q 043998 16 SVIQRQQSNQSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWKSENR 95 (101)
Q Consensus 16 lq~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~~~~e~~ 95 (101)
||+|||.+||||.|+|| ||++||+||+|+++++|.++|+|||++|++|||++|+|+++++||||+|+++||++|++||+
T Consensus 109 l~tgMr~akGkp~gwvA-rVk~Gqilfei~g~~~~~~~A~eALr~A~~KLP~~tkiv~~~kwgft~~~~~~~~~~~~~~~ 187 (219)
T 3j0l_J 109 LQQGMRGAWGKPHGLAA-RVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGE 187 (219)
T ss_dssp --CCSSCCCCEEEEECE-EECTTCEESCCCCCGGGHHHHHHHHHHHHHSSSCCCCCEECCCSSSSSCSCHHHHTTTTSCC
T ss_pred hhccccCCCCCCCeEEE-EEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCCeEEEEecccCccccCHHHHHHHHHCCe
Confidence 69999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 043998 96 MSWS 99 (101)
Q Consensus 96 l~~~ 99 (101)
|+|.
T Consensus 188 l~~d 191 (219)
T 3j0l_J 188 VKDD 191 (219)
T ss_dssp SCCC
T ss_pred EecC
Confidence 9985
No 3
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_I 1s1i_I 3jyw_I
Probab=99.97 E-value=6.3e-34 Score=220.80 Aligned_cols=83 Identities=45% Similarity=0.698 Sum_probs=81.1
Q ss_pred chHHHhhhcCCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHHHHHcCc
Q 043998 16 SVIQRQQSNQSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWKSENR 95 (101)
Q Consensus 16 lq~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~~~~e~~ 95 (101)
||+|||.+||||.|+|| ||++||+||+|+++++|.++|+|||++|++|||++|+|+++++||||+|+++||++|++||+
T Consensus 111 l~tGMr~~kGkp~gwvA-rVk~Gqilfei~g~~~~~~~A~eALrrA~~KLP~ktkiv~~~kwgft~~~~~~~~~~~~~~~ 189 (224)
T 3iz5_I 111 LQTGMRGAFGKPQGTCA-RVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGR 189 (224)
T ss_dssp HHHHHHHCSSSCSCEEE-ECCCCCSEECCCCCCCCSSCSSSSSSCCCSCCCCCEEEEECCTTTEEEEEEECCSSSCSHHH
T ss_pred hhccccCCCCCCCeEEE-EEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCceEEEEecccCccccCHHHHHHHHHcCc
Confidence 69999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 043998 96 MSWS 99 (101)
Q Consensus 96 l~~~ 99 (101)
|+|.
T Consensus 190 l~~d 193 (224)
T 3iz5_I 190 IMSD 193 (224)
T ss_dssp HHHH
T ss_pred EecC
Confidence 9863
No 4
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.96 E-value=1.3e-30 Score=201.14 Aligned_cols=84 Identities=35% Similarity=0.480 Sum_probs=58.9
Q ss_pred cchHHHhhhcCCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHHHHHcC
Q 043998 15 PSVIQRQQSNQSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWKSEN 94 (101)
Q Consensus 15 ~lq~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~~~~e~ 94 (101)
.||+|||.+||+|.|+|| ||++||+||+|++++.+.++|+|||++|++|||++|+|+++++||||+|+++||++|+++|
T Consensus 110 RlqtgMg~gkGkp~~wvA-rVkpGqilfEi~~~~v~~~~A~eALr~A~~KLP~ktkiv~~~~~gft~~~~~~~~~~~~~~ 188 (214)
T 2zkr_h 110 RLQTGMRGAFGKPQGTVA-KVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEK 188 (214)
T ss_dssp STTSSSTTCCCEEEEEEE-EECTTCEEEEEEECSTTHHHHHHHHHHHHHTSSSCEEEEECC-------------------
T ss_pred hhcccccCCCCCCcEEEE-EECCCCEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCccccCHHHHHHHHHCC
Confidence 478999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 043998 95 RMSWS 99 (101)
Q Consensus 95 ~l~~~ 99 (101)
+|+|.
T Consensus 189 ~~~~d 193 (214)
T 2zkr_h 189 RLIPD 193 (214)
T ss_dssp -----
T ss_pred eEecC
Confidence 99874
No 5
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=99.95 E-value=2.4e-29 Score=185.56 Aligned_cols=73 Identities=38% Similarity=0.542 Sum_probs=52.8
Q ss_pred cchHHHhhhcCCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHH
Q 043998 15 PSVIQRQQSNQSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYL 88 (101)
Q Consensus 15 ~lq~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~ 88 (101)
.||+|||.+||+|.|+|| ||++||+||+|++++.+.++|+|||++|++|||++|+|+++++||||+|+++||+
T Consensus 79 Rlq~gMg~gkG~p~~wvA-rVk~G~ilfei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~~~gft~~~~~~~~ 151 (151)
T 2pa2_A 79 RLQTGMRGAFGKPQGTVA-RVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFE 151 (151)
T ss_dssp --------------CCEE-EECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESCCCCCBC------
T ss_pred hhhcccccCCCCccEEEE-EECCCCEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCCCCCChhhCC
Confidence 478999999999999999 9999999999999999999999999999999999999999999999999999995
No 6
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.85 E-value=3.5e-22 Score=151.01 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=59.7
Q ss_pred chHHHhhhcCCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCcc--EEEEecCCC
Q 043998 16 SVIQRQQSNQSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQ--KIIVSRKWG 78 (101)
Q Consensus 16 lq~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrq--kI~is~k~G 78 (101)
||+|||.+||||.|+|| ||++||+||+|+++++|.++|+|||++|++|||++| +|+++++..
T Consensus 108 l~~gM~~~kGkp~gwvA-rVk~Gqilfei~~~~~~~~~A~eAlr~A~~KlP~~t~~kiv~~~~~~ 171 (181)
T 3j21_N 108 YGNGMRRPFGKPIGLAA-RLKKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKCYYRIYDKEGND 171 (181)
T ss_dssp SCCSSSSCSCCCCCCEE-EECSSEEEEEEEECSTTHHHHHHHHHHHHHSSSSCCSSCEEECCCC-
T ss_pred hccccccccCCcceEEE-EEcCCCEEEEEEecCCCHHHHHHHHHHHhccCCCCeeeEEEEeccHH
Confidence 79999999999999999 999999999999999999999999999999999999 999998764
No 7
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=99.82 E-value=5.4e-21 Score=143.34 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=57.3
Q ss_pred cchHHHhhhcCCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCC
Q 043998 15 PSVIQRQQSNQSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKW 77 (101)
Q Consensus 15 ~lq~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~ 77 (101)
.||+|||.+||+|.|+|| ||++||+||+|++++.+.++|+|||++|++|||++|+|+++++.
T Consensus 108 Rlq~rMg~gkG~p~~wvA-rVk~G~ilfei~~~~v~~~~A~eAlr~A~~KLP~ktkiv~~~~~ 169 (171)
T 1vq8_H 108 RVSDGMRAAFGKIVGTAA-RVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPAG 169 (171)
T ss_dssp ---CCSTTCCCEEEEEEE-EECTTCEEEEEEECTTTHHHHHHHHHHHGGGSSSCEEEEECSCC
T ss_pred hhhccccccCCCCcEEEE-EECCCCEEEEEECcCCCHHHHHHHHHHHHhhCCCcEEEEEecCC
Confidence 478999999999999999 99999999999999999999999999999999999999998764
No 8
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=99.76 E-value=1.9e-19 Score=133.30 Aligned_cols=58 Identities=17% Similarity=0.017 Sum_probs=55.7
Q ss_pred hHHHhhhcCCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCC
Q 043998 17 VIQRQQSNQSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKW 77 (101)
Q Consensus 17 q~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~ 77 (101)
++|||.+||+|.|+|| ||++||+||+|++.+++ +|+|||++|++|||++|+|+++++.
T Consensus 98 etrMg~gkG~p~~wvA-rVk~G~ilfei~gv~~~--~A~eAlr~A~~KlP~ktkiv~~~~~ 155 (157)
T 1ffk_F 98 GDGMRAPFGKSVGTAA-RSHGANHDFIAWVNPDP--AVEFAWRRAYMKVTPTVNIDSSPAG 155 (157)
T ss_pred cccccCCCCCccEEEE-EEcCCCEEEEEeccCHH--HHHHHHHHHHhhCCCcEEEEEecCC
Confidence 8999999999999999 99999999999999887 9999999999999999999998764
No 9
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=99.60 E-value=3.1e-16 Score=113.28 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=55.4
Q ss_pred CcchHHHhhhcCCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 14 RPSVIQRQQSNQSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 14 ~~lq~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
.|++.+|+.+||+|.+.|| ||++||+||+|.+. +.+.|+|||++|++|||++|+|++..
T Consensus 76 k~~etRMGkGKG~~~~wva-~Vk~G~ilfEi~g~--~~~~A~eAlr~a~~KLP~~~kiv~~~ 134 (136)
T 3r8s_M 76 KPLAVRMGKGKGNVEYWVA-LIQPGKVLYEMDGV--PEELAREAFKLAAAKLPIKTTFVTKT 134 (136)
T ss_dssp CCSSCCSCSSCCEEEEEEE-EECTTCEEEEEESS--CHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred CchhccCCCCCCCCCEEEE-EECCCCEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 5788999999999999999 99999999999994 89999999999999999999998753
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=99.49 E-value=1.3e-14 Score=102.44 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=51.4
Q ss_pred CcchHHHhhhcCCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCccE
Q 043998 14 RPSVIQRQQSNQSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQK 70 (101)
Q Consensus 14 ~~lq~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrqk 70 (101)
.|+...|....|+|.+.|| ||++||+||+|.++ .+.++|+|||++|++|||++++
T Consensus 64 k~~e~RMG~GKG~~~~wva-~Vk~G~ilfEi~g~-~~~~~a~eAlr~a~~KlP~~~~ 118 (118)
T 2ftc_I 64 KSVGHRMGGGKGAIDHYVT-PVKAGRLVVEMGGR-CEFEEVQGFLDQVAHKLPFAAK 118 (118)
T ss_pred CchhcccccCCCCccEEEE-EECCCCEEEEEecc-CCHHHHHHHHHHHHhhCCCCCC
Confidence 5778889999999999999 99999999999995 8999999999999999999875
No 11
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=99.46 E-value=1.3e-14 Score=104.52 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=53.5
Q ss_pred CcchHHHhhhcCCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEe
Q 043998 14 RPSVIQRQQSNQSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVS 74 (101)
Q Consensus 14 ~~lq~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is 74 (101)
.|+...|....|+|.+.|| ||++||+||+|.+ .+.+.|+|||++|++|||++|+|+++
T Consensus 77 k~~e~RMG~GKG~~~~wva-~Vk~G~ilfEi~g--v~~~~A~eAlr~a~~KLP~~~kiv~~ 134 (135)
T 3bbo_O 77 RPAETRMGSGKGSPEYWVA-VVKPGRILYEISG--VAENIARRAVAIAASKMPIRTQFIIS 134 (135)
T ss_dssp CCSSCCSSCCCSCSSCCCC-CCCTTCEEEEECS--SCTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred ccccccccccCCCceEEEE-EECCCCEEEEEec--CCHHHHHHHHHHHHhhCCCcEEEEec
Confidence 4677788888889999999 9999999999999 78899999999999999999999874
No 12
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...
Probab=99.30 E-value=2.2e-13 Score=98.89 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=49.5
Q ss_pred HHhhhc--CCccccceeeecCCCeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 19 QRQQSN--QSSMGICQSRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 19 GMR~AF--GKP~G~aA~RV~~GQvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
+-|..+ |+|.+.|| ||++||+||+|.+ .+.+.|+|||++|++|||++|+|++++
T Consensus 81 e~RMG~GKG~~~~wva-~Vk~G~ilfEi~g--v~~~~A~eAlr~A~~KLP~~~kiv~~~ 136 (142)
T 2zjr_J 81 ETRMGKGKGAVEYWVS-VVKPGRVMFEVAG--VTEEQAKEAFRLAGHKLPIQTKMVKRE 136 (142)
T ss_dssp SCCCSSSCCTTSEEBC-CBCTTEEEECCCS--SCSTTTTTHHHHHHHTCSSCEEEECSC
T ss_pred cccccccCCCCCEEEE-EECCCCEEEEEeC--CCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 346777 88999999 9999999999999 788999999999999999999999876
No 13
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=74.70 E-value=3.3 Score=34.07 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=26.5
Q ss_pred eecCCCeEEEEeeCCCChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHPDSNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k~~~~~~akEALrRA 61 (101)
+|+.||+|++|+++++..+.|.+.|+.|
T Consensus 379 ~v~~g~~l~~i~~~~~~~~~a~~~~~~~ 406 (423)
T 2dsj_A 379 RVERGEALALVYHRRRGLEEALGHLREA 406 (423)
T ss_dssp EECTTSEEEEEEECSSSHHHHHHHHHHH
T ss_pred EeCCCCeEEEEEeCCccHHHHHHHHHhC
Confidence 8999999999999988999999999987
No 14
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=74.53 E-value=3.2 Score=34.12 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=27.8
Q ss_pred eecCCCeEEEEeeCCCChHHHHHHHhhcccCC
Q 043998 34 RFKALQTIFKLFHPDSNSHHAQEALHRAKFKF 65 (101)
Q Consensus 34 RV~~GQvI~svr~k~~~~~~akEALrRAk~Kf 65 (101)
+|+.||+|++|+++++..+.|.+.|+.| +.+
T Consensus 387 ~v~~g~~l~~i~~~~~~~~~a~~~~~~~-~~~ 417 (433)
T 1brw_A 387 RVQKGEALATIHSNRPDVLDVKEKIEAA-IRL 417 (433)
T ss_dssp EECTTCEEEEEEESSSCCHHHHHHHHTT-EEE
T ss_pred EECCCCeEEEEEcCCccHHHHHHHHHhc-Cee
Confidence 8999999999999988999999999987 443
No 15
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=65.12 E-value=12 Score=23.63 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=28.6
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
|+.+|++|++|--. .-..+.+.+.|+.+..+ ++.-.+.|.+.
T Consensus 51 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~-~~~v~l~v~R~ 95 (108)
T 3cbz_A 51 RIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK-PGPIVLTVAKS 95 (108)
T ss_dssp CCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS-SSCEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC-CCeEEEEEEeC
Confidence 69999999998533 33367888888887322 34566666664
No 16
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=63.59 E-value=6.3 Score=32.53 Aligned_cols=28 Identities=4% Similarity=0.191 Sum_probs=24.8
Q ss_pred eecCCCeEEEEeeCCCChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHPDSNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k~~~~~~akEALrRA 61 (101)
+|+.||+|++|+.++..++.|.+.|+.|
T Consensus 390 ~V~~g~~l~~i~~~~~~~~~a~~~~~~a 417 (436)
T 3h5q_A 390 KVEEGESLLTIHSNRQDVDDVVKKLDSS 417 (436)
T ss_dssp EECTTSEEEEEEESSSCCHHHHHHHHHH
T ss_pred EeCCCCeEEEEeCChHhHHHHHHHHHhc
Confidence 8999999999995567789999998886
No 17
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=61.68 E-value=7 Score=32.58 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=25.5
Q ss_pred eecCCCeEEEEeeCCC-ChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHPDS-NSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k~~-~~~~akEALrRA 61 (101)
+|+.||+|++|+.+.+ ..+.|.+.|+.|
T Consensus 422 ~V~~g~~l~~i~~~~~~~~~~a~~~~~~~ 450 (474)
T 1uou_A 422 RLRRGTPWLRVHRDGPALSGPQSRALQEA 450 (474)
T ss_dssp EECTTCEEEEEEESSSSCCHHHHHHHHHH
T ss_pred EECCCCeEEEEEcCChhhHHHHHHHHHhc
Confidence 8999999999999976 588999999887
No 18
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=61.17 E-value=4.2 Score=33.47 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=26.9
Q ss_pred eecCCCeEEEEeeCCC-ChHHHHHHHhhcccCC
Q 043998 34 RFKALQTIFKLFHPDS-NSHHAQEALHRAKFKF 65 (101)
Q Consensus 34 RV~~GQvI~svr~k~~-~~~~akEALrRAk~Kf 65 (101)
+|+.||+|++|+++++ ..+.|.+.|+.| +.+
T Consensus 392 ~v~~g~~l~~i~~~~~~~~~~a~~~~~~~-~~i 423 (440)
T 2tpt_A 392 QVDGQRPLAVIHAKDENNWQEAAKAVKAA-IKL 423 (440)
T ss_dssp EEBTTBCSEEEEESSHHHHHHHHHHHHHH-EEE
T ss_pred EECCCCeEEEEecCCHhhHHHHHHHHHhc-Cee
Confidence 8999999999999977 789999999887 443
No 19
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=61.09 E-value=16 Score=23.28 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=27.7
Q ss_pred eecCCCeEEEEeeCC-C--ChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHPD-S--NSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~--~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
|+.+|+.|++|--.+ . ..+.|.+.|+.+...--..-.|.|.+
T Consensus 59 ~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R 103 (109)
T 1wi4_A 59 RLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 103 (109)
T ss_dssp SCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEe
Confidence 699999999986443 2 26788888988864433344455544
No 20
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=58.42 E-value=12 Score=24.69 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=35.7
Q ss_pred CeEEEEeeCCCChHHHHHHHhhcccC-CCCccEEEEecCCCccc
Q 043998 39 QTIFKLFHPDSNSHHAQEALHRAKFK-FPVRQKIIVSRKWGFTK 81 (101)
Q Consensus 39 QvI~svr~k~~~~~~akEALrRAk~K-fPgrqkI~is~k~GFT~ 81 (101)
.+.+.+-|.++..+.+.+|++.+... -||.-+|.|+.=..+..
T Consensus 62 k~~ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV~pVe~~~r 105 (116)
T 2ns1_B 62 KVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIR 105 (116)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHCCSSTTCCEEEEEEESCCBC
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEhHHEEE
Confidence 47888889999999999999988776 89999999987554433
No 21
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=58.35 E-value=11 Score=22.94 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=26.8
Q ss_pred eecCCCeEEEEe---eCCCChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLF---HPDSNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr---~k~~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|- +.....+.+.+.|+.+. +.-.+.+.+.
T Consensus 39 ~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~----~~v~L~v~~~ 80 (88)
T 3e17_A 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSR----GKLQLVVLRD 80 (88)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHTT----TEEEEEECCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEeCC
Confidence 699999999984 33356678888888753 4445555443
No 22
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=58.32 E-value=21 Score=23.23 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=35.3
Q ss_pred CeEEEEeeCCCChHHHHHHHhhcccC-CCCccEEEEecCCCcccc
Q 043998 39 QTIFKLFHPDSNSHHAQEALHRAKFK-FPVRQKIIVSRKWGFTKF 82 (101)
Q Consensus 39 QvI~svr~k~~~~~~akEALrRAk~K-fPgrqkI~is~k~GFT~~ 82 (101)
.+.+.+-|+++..+.+.+|++.+... -||.-+|.|+.=..+..+
T Consensus 58 k~~ieivv~d~~v~~vv~~I~~~~~tg~~GdGkiFV~pVe~~~ri 102 (112)
T 2eg2_A 58 KVKIEVVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPVEDVIRI 102 (112)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEECSCCBCT
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEhHhEEEe
Confidence 34788889999999999999987654 688899999876555443
No 23
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=57.53 E-value=22 Score=23.99 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=31.9
Q ss_pred CeEEEEeeCCCChHHHHHHHhhccc-CCCCccEEEEecC
Q 043998 39 QTIFKLFHPDSNSHHAQEALHRAKF-KFPVRQKIIVSRK 76 (101)
Q Consensus 39 QvI~svr~k~~~~~~akEALrRAk~-KfPgrqkI~is~k 76 (101)
.+.+.+-|+++..+.+.+++..+.. -=||.-||.|+.-
T Consensus 58 K~kieivV~de~ve~vv~~I~~~a~TG~~GDGkIFV~~V 96 (119)
T 3ncq_A 58 KVKLEIVVKDDAVEEVIGLIVNSAFTGSPGDGKIFIIPV 96 (119)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEEC
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCCEEEEEEh
Confidence 3788999999999999999988654 5788999998853
No 24
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=57.29 E-value=13 Score=24.39 Aligned_cols=42 Identities=14% Similarity=-0.005 Sum_probs=34.5
Q ss_pred eEEEEeeCCCChHHHHHHHhhcccC-CCCccEEEEecCCCccc
Q 043998 40 TIFKLFHPDSNSHHAQEALHRAKFK-FPVRQKIIVSRKWGFTK 81 (101)
Q Consensus 40 vI~svr~k~~~~~~akEALrRAk~K-fPgrqkI~is~k~GFT~ 81 (101)
+.+.+-|.++..+.+.+|++.+... -||.-+|.|+.=..+..
T Consensus 61 ~~ieivv~d~~v~~vv~~I~~~~~tg~~GdGkiFV~pVe~~~r 103 (114)
T 2gw8_A 61 IKIELVLADDAVERAIDVIVEVARSGKIGDGKIFVLPVEEAIR 103 (114)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHCCSSTTCCEEEEEEESCCBC
T ss_pred EEEEEEEcHHHHHHHHHHHHHHhCCCCCCCEEEEEEEhHHeEE
Confidence 7888999999999999999987654 78899999987554433
No 25
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=56.92 E-value=24 Score=21.53 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=26.4
Q ss_pred eecCCCeEEEEeeCC-CC--hHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD-SN--SHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~~--~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--.+ .+ .+.+.++|+.+ ++...+.|.+.
T Consensus 57 ~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~r~ 98 (103)
T 2fcf_A 57 TLKPGDRIVEVDGMDLRDASHEQAVEAIRKA----GNPVVFMVQSI 98 (103)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTC----CSSEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCcEEEEEEEC
Confidence 389999999985432 23 67788888765 45566666553
No 26
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=55.62 E-value=14 Score=24.53 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=33.1
Q ss_pred CeEEEEeeCCCChHHHHHHHhhcccC-CCCccEEEEecCCCc
Q 043998 39 QTIFKLFHPDSNSHHAQEALHRAKFK-FPVRQKIIVSRKWGF 79 (101)
Q Consensus 39 QvI~svr~k~~~~~~akEALrRAk~K-fPgrqkI~is~k~GF 79 (101)
.+.+.+-|+++..+.+.+|++.+... -||.-+|.|+.=..+
T Consensus 60 K~~ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV~pVe~~ 101 (119)
T 2j9c_A 60 KVKIELVVKEEDVDNVIDIICENARTGNPGDGKIFVIPVERV 101 (119)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHCCSSTTCEEEEEEEECEE
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEhHHE
Confidence 45688889999999999999987654 688899998864443
No 27
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=55.51 E-value=27 Score=22.36 Aligned_cols=41 Identities=10% Similarity=-0.047 Sum_probs=26.7
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEecCCC
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSRKWG 78 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~k~G 78 (101)
++.+|++|++|--. ....+.+.+.|+.+. +.-.+.|.+..+
T Consensus 68 ~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~~~~~ 111 (114)
T 2gzv_A 68 TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK----GEVTIHYNKLQY 111 (114)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHCC----SEEEEEEECCCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEeccc
Confidence 48999999998432 356677777787643 334555555444
No 28
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=54.23 E-value=26 Score=23.39 Aligned_cols=38 Identities=16% Similarity=0.010 Sum_probs=31.9
Q ss_pred eEEEEeeCCCChHHHHHHHhhccc-CCCCccEEEEecCC
Q 043998 40 TIFKLFHPDSNSHHAQEALHRAKF-KFPVRQKIIVSRKW 77 (101)
Q Consensus 40 vI~svr~k~~~~~~akEALrRAk~-KfPgrqkI~is~k~ 77 (101)
+.+.+-|.++..+.+.+++..+.. -=||.-||.|+.=.
T Consensus 59 ~kieivV~d~~ve~vv~~I~~~a~Tg~~GDGkIFV~~Ve 97 (116)
T 4aff_A 59 LKLEIVVEDAQVDTVIDKIVAAARTGENGDGKIFVSPVD 97 (116)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHCCSSTTCEEEEEEECS
T ss_pred EEEEEEEcHHHHHHHHHHHHHHhcCCCCCCeEEEEEEhH
Confidence 788999999999999999987754 46888999998643
No 29
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=51.19 E-value=24 Score=21.87 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=20.4
Q ss_pred eecCCCeEEEEe---eCCCChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLF---HPDSNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr---~k~~~~~~akEALrRA 61 (101)
++.+|++|++|- +.....+.+.+.|+.+
T Consensus 52 ~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~ 82 (103)
T 1uep_A 52 RLHPGDELVYVDGIPVAGKTHRYVIDLMHHA 82 (103)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 589999999984 3333467777788775
No 30
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=50.94 E-value=37 Score=20.22 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=24.4
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEecCC
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSRKW 77 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~k~ 77 (101)
++.+|++|++|--. ......+...++.+ ...-.+.|.+..
T Consensus 47 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~R~~ 89 (92)
T 2qg1_A 47 RLMQGDQILMVNGEDVRNATQEAVAALLKCS----LGTVTLEVGRIS 89 (92)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHC----CSEEEEEEECCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEccc
Confidence 48999999998433 22345666666653 234456666543
No 31
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=50.71 E-value=37 Score=21.22 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=27.0
Q ss_pred eecCCCeEEEEee---CCCChHHHHHHHhhcccCCCCccEEEEecCC
Q 043998 34 RFKALQTIFKLFH---PDSNSHHAQEALHRAKFKFPVRQKIIVSRKW 77 (101)
Q Consensus 34 RV~~GQvI~svr~---k~~~~~~akEALrRAk~KfPgrqkI~is~k~ 77 (101)
++.+|+.|++|-- .......+.++|+.+ +....+.|.+..
T Consensus 50 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~~ 92 (106)
T 4amh_A 50 KLQIGDKLLAVNNVALEEVTHEEAVTALKNT----SDFVYLKVAKPG 92 (106)
T ss_dssp CCCTTCEEEEETTEECSSCCHHHHHHHHHSC----CSEEEEEEECCS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhCC----CCeEEEEEEeCC
Confidence 5999999999843 333456677777664 345567777654
No 32
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=50.55 E-value=41 Score=21.78 Aligned_cols=43 Identities=19% Similarity=0.073 Sum_probs=33.2
Q ss_pred eCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHHHHHc
Q 043998 46 HPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWKSE 93 (101)
Q Consensus 46 ~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~~~~e 93 (101)
+.+|+++.=+++|+..... +|.....-|-+..+|.+|.+|.+.
T Consensus 10 t~~Qsl~~Q~~~l~~~~~~-----~i~~d~~Sg~~~~~Rp~l~~ll~~ 52 (124)
T 3pkz_A 10 SLDQNLERQLENLKTFGAE-----KIFTEKQSGKSIENRPILQKALNF 52 (124)
T ss_dssp STTSCHHHHHHHHHHTTCS-----EEEEEESCSSCSTTCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHhCCc-----eEEEEcccCCChhcCHHHHHHHHH
Confidence 3467888888899887643 787777778655899999999874
No 33
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=50.53 E-value=16 Score=22.90 Aligned_cols=51 Identities=6% Similarity=-0.050 Sum_probs=35.5
Q ss_pred EEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHHHHHcCcc
Q 043998 42 FKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWKSENRM 96 (101)
Q Consensus 42 ~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~~~~e~~l 96 (101)
....+.......+.++|..+-..++ +..|+..++..|+. ..|..+.++..+
T Consensus 29 ~~~~~~~~~~~~~~~~l~~~~~~~g-p~~i~sDnG~~f~s---~~~~~~~~~~gi 79 (152)
T 3kks_A 29 EAQVIPEETALQVALCILQLIQRYT-VLHLHSDNGPCFTA---HRIENLCKYLGI 79 (152)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHSC-CSEEEECSCHHHHS---HHHHHHHHHTTC
T ss_pred EEEEeCCcCHHHHHHHHHHHHHHhC-CcEEecCCchHhhH---HHHHHHHHHcCC
Confidence 4445567778899999998888888 77777777777765 455555544433
No 34
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=49.44 E-value=26 Score=24.49 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=19.7
Q ss_pred eecCCCeEEEEe---eCCCChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLF---HPDSNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr---~k~~~~~~akEALrRA 61 (101)
|+.+|+.|++|- +.......|.+.|+.+
T Consensus 129 ~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~ 159 (170)
T 3egg_C 129 RIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 159 (170)
T ss_dssp CCCTTCEEEEETTEECTTBCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 588999998884 3334456777778764
No 35
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=47.47 E-value=36 Score=22.33 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=31.7
Q ss_pred CeEEEEeeCCCChHHHHHHHhhccc-CCCCccEEEEecC
Q 043998 39 QTIFKLFHPDSNSHHAQEALHRAKF-KFPVRQKIIVSRK 76 (101)
Q Consensus 39 QvI~svr~k~~~~~~akEALrRAk~-KfPgrqkI~is~k 76 (101)
.+.+.+-|.++..+.+.+|+..+.. -=||.-||.|+.=
T Consensus 58 K~kieivV~d~~v~~vv~~I~~~~~tg~~GdGkIfV~~v 96 (112)
T 3mhy_A 58 KVKVEVAVSDDQYEQVVEAIQKAANTGRIGDGKIFVLDI 96 (112)
T ss_dssp EEEEEEEECTTTHHHHHHHHHHHHCCSSTTCCEEEEEEC
T ss_pred eEEEEEEEchHHHHHHHHHHHHHhcCCCCCCeEEEEEEh
Confidence 3778999999999999999987654 4688889998853
No 36
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=46.58 E-value=29 Score=22.44 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=34.3
Q ss_pred CeEEEEeeCCCChHHHHHHHhhcc-cCCCCccEEEEecCCCccc
Q 043998 39 QTIFKLFHPDSNSHHAQEALHRAK-FKFPVRQKIIVSRKWGFTK 81 (101)
Q Consensus 39 QvI~svr~k~~~~~~akEALrRAk-~KfPgrqkI~is~k~GFT~ 81 (101)
.+.+.+-|+++..+.+.+|++.+. .--||.-+|.|+.=..+..
T Consensus 58 k~~ieivv~d~~v~~vv~~I~~~~~tg~~GdGkiFV~~V~~~~r 101 (112)
T 1hwu_A 58 KVKIEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIR 101 (112)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEECSEEEE
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEhHHEEE
Confidence 378899999999999999999864 4578889999987554433
No 37
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.51 E-value=41 Score=20.44 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=24.2
Q ss_pred eecCCCeEEEEeeC--CCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHP--DSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k--~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
.+.+|++|++|--. ..+.+.+.+.|+.+ ...-.+.|.+
T Consensus 47 ~L~~GD~I~~ing~~v~~~~~~~~~~l~~~----~~~v~l~v~~ 86 (91)
T 2e7k_A 47 LLHVGDIIKEVNGQPVGSDPRALQELLRNA----SGSVILKILS 86 (91)
T ss_dssp CCCTTCEEEEETTEECTTCHHHHHHHHHTC----CSSBCEEEEC
T ss_pred CCCCCCEEEEECCEECCCCHHHHHHHHHcC----CCeEEEEEEE
Confidence 58899999998433 24667777788763 2344444443
No 38
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=46.47 E-value=21 Score=21.55 Aligned_cols=29 Identities=7% Similarity=0.063 Sum_probs=21.2
Q ss_pred eecCCCeEEEEee---CCCChHHHHHHHhhcc
Q 043998 34 RFKALQTIFKLFH---PDSNSHHAQEALHRAK 62 (101)
Q Consensus 34 RV~~GQvI~svr~---k~~~~~~akEALrRAk 62 (101)
++.+|+.|++|-- .....+.+.+.|+.+.
T Consensus 46 ~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 77 (93)
T 3o46_A 46 LIHVGDELREVNGIPVEDKRPEEIIQILAQSQ 77 (93)
T ss_dssp CCCTTCEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 5889999999843 3356678888887754
No 39
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=46.05 E-value=28 Score=21.53 Aligned_cols=32 Identities=6% Similarity=-0.057 Sum_probs=22.8
Q ss_pred ccceeeecCCCeEEEEeeCC---CChHHHHHHHhhc
Q 043998 29 GICQSRFKALQTIFKLFHPD---SNSHHAQEALHRA 61 (101)
Q Consensus 29 G~aA~RV~~GQvI~svr~k~---~~~~~akEALrRA 61 (101)
-.++ .+.+|++|++|--.+ ...+.+.+.|+.+
T Consensus 51 ~~~g-gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~ 85 (101)
T 2yt7_A 51 ERSG-ALSIGDRLTAINGTSLVGLPLAACQAAVRET 85 (101)
T ss_dssp GGGS-SCCTTCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred HHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 3334 589999999986554 3567788888764
No 40
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=45.69 E-value=18 Score=22.60 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=28.3
Q ss_pred ceeeecCCCeEEEEe---eCCCChHHHHHHHhhcccCCCCccEEEEecCC
Q 043998 31 CQSRFKALQTIFKLF---HPDSNSHHAQEALHRAKFKFPVRQKIIVSRKW 77 (101)
Q Consensus 31 aA~RV~~GQvI~svr---~k~~~~~~akEALrRAk~KfPgrqkI~is~k~ 77 (101)
+| .+.+|+.|++|- +.......+.+.|+.+. +.-.+.|.+.+
T Consensus 51 a~-gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~~~~ 95 (103)
T 2dc2_A 51 CG-GLHVGDAILAVNGVNLRDTKHKEAVTILSQQR----GEIEFEVVYVA 95 (103)
T ss_dssp HT-CCCSSEEEEEETTEESTTSCHHHHHHHHHHCC----SEEEEEEEECC
T ss_pred hC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CcEEEEEEecC
Confidence 35 789999999984 44445677888888653 34455555544
No 41
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=45.66 E-value=35 Score=22.17 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=25.4
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
++.+|++|++|--.+ ...+.+.++|+.+ +..-.+.|.+
T Consensus 77 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~----~~~v~l~v~r 117 (123)
T 2iwq_A 77 TLKPGDRIVEVDGMDLRDASHEQAVEAIRKA----GNPVVFMVQS 117 (123)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHC----CSSEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEE
Confidence 488999999985432 2367788888775 3455555554
No 42
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=45.57 E-value=20 Score=25.40 Aligned_cols=48 Identities=6% Similarity=-0.091 Sum_probs=33.8
Q ss_pred hcCcchHHHhhhcCCcc----ccceeeecCCCeEEEEeeCCCChHHHHHHHhh
Q 043998 12 KQRPSVIQRQQSNQSSM----GICQSRFKALQTIFKLFHPDSNSHHAQEALHR 60 (101)
Q Consensus 12 ~~~~lq~GMR~AFGKP~----G~aA~RV~~GQvI~svr~k~~~~~~akEALrR 60 (101)
+..-+.+-.+.-||--- =+.. ++.+|+.++-|-+-..|...|.+|++-
T Consensus 60 ~l~~I~~ea~~r~~~~~v~v~HR~G-~l~vGe~~v~VaVss~HR~~Af~A~~~ 111 (149)
T 2q5w_E 60 KLAQIGDEINEKWPGTITSIVHRIG-PLQISDIAVLIAVSSPHRKDAYRANEY 111 (149)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEECE-EECTTCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEEEEEc-ccCCCCeEEEEEEEcccHHHHHHHHHH
Confidence 33444555556664321 1344 789999999999999999999988764
No 43
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=45.34 E-value=21 Score=21.18 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=20.5
Q ss_pred eeeecCCCeEEEEeeC---CCChHHHHHHHhhc
Q 043998 32 QSRFKALQTIFKLFHP---DSNSHHAQEALHRA 61 (101)
Q Consensus 32 A~RV~~GQvI~svr~k---~~~~~~akEALrRA 61 (101)
| .+.+|+.|++|--. ......+.+.|+.+
T Consensus 45 a-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 76 (87)
T 4e34_A 45 G-GLHVGDAILAVNGVNLRDTKHKEAVTILSQQ 76 (87)
T ss_dssp S-CCCTTEEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred C-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 5 78999999998433 34556777777754
No 44
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=44.96 E-value=20 Score=25.26 Aligned_cols=47 Identities=4% Similarity=-0.082 Sum_probs=32.8
Q ss_pred cCcchHHHhhhcCCcc----ccceeeecCCCeEEEEeeCCCChHHHHHHHhh
Q 043998 13 QRPSVIQRQQSNQSSM----GICQSRFKALQTIFKLFHPDSNSHHAQEALHR 60 (101)
Q Consensus 13 ~~~lq~GMR~AFGKP~----G~aA~RV~~GQvI~svr~k~~~~~~akEALrR 60 (101)
..-+.+-.+.-||--- =+.. ++.+|+.++-|-+-..|...|.+|++-
T Consensus 69 l~~I~~ea~~r~~~~~v~i~HR~G-~l~vGe~~v~VaVss~HR~~Af~A~~~ 119 (147)
T 2wp4_A 69 LMSIIGRCEDKAEGVRVAVAHRTG-ELQIGDAAVVIGASAPHRAEAFDAARM 119 (147)
T ss_dssp HHHHHHHHHTSSTTCEEEEEEECE-EECTTCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEEEEEc-ccCCCCeEEEEEEeccCHHHHHHHHHH
Confidence 3344445555554211 1344 789999999999999999999998764
No 45
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=44.22 E-value=21 Score=25.20 Aligned_cols=48 Identities=10% Similarity=-0.154 Sum_probs=33.3
Q ss_pred hcCcchHHHhhhcCCcc----ccceeeecCCCeEEEEeeCCCChHHHHHHHhh
Q 043998 12 KQRPSVIQRQQSNQSSM----GICQSRFKALQTIFKLFHPDSNSHHAQEALHR 60 (101)
Q Consensus 12 ~~~~lq~GMR~AFGKP~----G~aA~RV~~GQvI~svr~k~~~~~~akEALrR 60 (101)
+..-+.+-.+.-||--- =+.. ++.+|+.++-|-+-..|...|-+|++-
T Consensus 62 ~l~~I~~ea~~r~~~~~v~v~HR~G-~l~vGe~~v~VaVss~HR~~Af~A~~~ 113 (150)
T 1fm0_E 62 ALAEIVDEARNRWPLGRVTVIHRIG-ELWPGDEIVFVGVTSAHRSSAFEAGQF 113 (150)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEEECE-EECTTCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEc-ccCCCCEEEEEEEEcCcHHHHHHHHHH
Confidence 33344455555564210 1344 789999999999999999999988764
No 46
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=43.97 E-value=26 Score=24.14 Aligned_cols=41 Identities=7% Similarity=-0.048 Sum_probs=33.7
Q ss_pred CeEEEEeeCCCChHHHHHHHhhcccC-CCCccEEEEecCCCc
Q 043998 39 QTIFKLFHPDSNSHHAQEALHRAKFK-FPVRQKIIVSRKWGF 79 (101)
Q Consensus 39 QvI~svr~k~~~~~~akEALrRAk~K-fPgrqkI~is~k~GF 79 (101)
.+.+.+-|+++..+.+.++++.+... -||.-+|.|+.=..+
T Consensus 71 K~~ieivV~de~ve~Vv~~I~~~~~tg~~GdGkIFV~pVe~~ 112 (135)
T 2o66_A 71 KVKMEIVVKKDQVESVINTIIEGARTGEIGDGKIFVLPVSDV 112 (135)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHCCSSTTCCEEEEEEECEE
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhCCCCCCCEEEEEEEhHHE
Confidence 45788889999999999999988776 788899998864433
No 47
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=43.95 E-value=25 Score=22.32 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=18.5
Q ss_pred eecCCCeEEEEeeCCC---ChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHPDS---NSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k~~---~~~~akEALrRA 61 (101)
++.+|++|++|--.+= ..+.+.+.|+.+
T Consensus 54 ~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~ 84 (97)
T 2ejy_A 54 SLHVGDEILEINGTNVTNHSVDQLQKAMKET 84 (97)
T ss_dssp CCCTTCEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4778888888854432 256777777754
No 48
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=43.15 E-value=22 Score=24.91 Aligned_cols=29 Identities=7% Similarity=-0.027 Sum_probs=25.8
Q ss_pred ceeeecCCCeEEEEeeCCCChHHHHHHHhh
Q 043998 31 CQSRFKALQTIFKLFHPDSNSHHAQEALHR 60 (101)
Q Consensus 31 aA~RV~~GQvI~svr~k~~~~~~akEALrR 60 (101)
.. +|.+|+.++-|-+-..|...|-+|++-
T Consensus 88 ~G-~l~~ge~~v~Vav~s~HR~~Af~A~~~ 116 (135)
T 4ap8_A 88 LG-LVPVSEASIIIAVSSAHRAASLEAVSY 116 (135)
T ss_dssp CE-EEETTSEEEEEEEEESSHHHHHHHHHH
T ss_pred cc-cccCCCeEEEEEEEccCHHHHHHHHHH
Confidence 45 789999999999999999999998874
No 49
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=42.51 E-value=58 Score=20.84 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=25.5
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--. ......+.+.|+.+. +.-.+.|.+.
T Consensus 71 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~----~~v~l~v~R~ 112 (117)
T 2fne_A 71 RLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK----GTVTLMVLSS 112 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHCC----SSEEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEeC
Confidence 59999999998533 235677777887653 3345555553
No 50
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=42.37 E-value=47 Score=21.44 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=34.2
Q ss_pred CeEEEEeeCCCChHHHHHHHhhcc-cCCCCccEEEEecCCCcccc
Q 043998 39 QTIFKLFHPDSNSHHAQEALHRAK-FKFPVRQKIIVSRKWGFTKF 82 (101)
Q Consensus 39 QvI~svr~k~~~~~~akEALrRAk-~KfPgrqkI~is~k~GFT~~ 82 (101)
.+.+.+-|.++..+.+.+|++.+. .--||.-+|.|+.=..+..+
T Consensus 60 k~~ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV~pVe~~~ri 104 (114)
T 3bzq_A 60 KVRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRV 104 (114)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHCCSSTTCCEEEEEEESCCBCT
T ss_pred EEEEEEEECHHHHHHHHHHHHHHhcCCCCCCEEEEEEEhHHeEEe
Confidence 347888889999999999998864 45788899999875554433
No 51
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=41.84 E-value=57 Score=20.38 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=25.6
Q ss_pred eecCCCeEEEEeeC----CCChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHP----DSNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k----~~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--. ......+.++|+.+ ...-.+.|.+.
T Consensus 67 ~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~----~~~v~l~v~R~ 109 (117)
T 2o2t_A 67 RLKETDQILAINGQALDQTITHQQAISILQKA----KDTVQLVIARG 109 (117)
T ss_dssp CCCTTCEEEEETTEECCTTSCHHHHHHHHHHC----CSEEEEEEESS
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHcC----CCEEEEEEEeC
Confidence 58999999998533 23567777888763 23445566554
No 52
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=41.58 E-value=50 Score=20.30 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=24.5
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEecCC
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSRKW 77 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~k~ 77 (101)
++.+|++|++|--. ......+..+++.+ ...-.+.|.+..
T Consensus 51 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~R~~ 93 (105)
T 2awx_A 51 KLQIGDKLLAVNSVSLEEVTHEEAVTALKNT----SDFVYLKVAKPT 93 (105)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHHHHHSC----CSEEEEEEECCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEcCC
Confidence 59999999998432 23345566666543 234456666543
No 53
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=40.61 E-value=53 Score=20.45 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=24.7
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--.+ .....+.+.|+.+. ..-.+.|.+.
T Consensus 61 ~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~----~~v~l~v~R~ 102 (116)
T 2dm8_A 61 RLWAGDQILEVNGVDLRNSSHEEAITALRQTP----QKVRLVVYRD 102 (116)
T ss_dssp CCCTTCEEEEETTEECSSSCHHHHHHHHHTCC----SEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CeEEEEEEeC
Confidence 599999999985432 22566677776543 3445666553
No 54
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=40.14 E-value=20 Score=25.54 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=37.0
Q ss_pred hcCcchHHHhhhcCCc-c---ccceeeecCCCeEEEEeeCCCChHHHHHHHhhc----ccCCCC
Q 043998 12 KQRPSVIQRQQSNQSS-M---GICQSRFKALQTIFKLFHPDSNSHHAQEALHRA----KFKFPV 67 (101)
Q Consensus 12 ~~~~lq~GMR~AFGKP-~---G~aA~RV~~GQvI~svr~k~~~~~~akEALrRA----k~KfPg 67 (101)
+..-+.+-.+.-||-- + =+.. ++.+|+.|+-|-+-..|...|.+|++-+ |...|-
T Consensus 66 ~l~~I~~ea~~r~~l~~v~v~HR~G-~l~vGe~iv~VaVss~HR~~Af~A~~~~iD~lK~~aPi 128 (154)
T 2omd_A 66 EMEKIRQETIEKFGVKEVFIHHRLG-LVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPI 128 (154)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECE-EEETTSCCEEEEEEESSHHHHHHHHHHHHHHHHHHSCE
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEc-ccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCCE
Confidence 3344455556666421 1 1344 7899999999999999999999887643 444553
No 55
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=39.78 E-value=42 Score=21.82 Aligned_cols=42 Identities=14% Similarity=-0.046 Sum_probs=32.8
Q ss_pred eEEEEeeCCCChHHHHHHHhhccc-CCCCccEEEEecCCCccc
Q 043998 40 TIFKLFHPDSNSHHAQEALHRAKF-KFPVRQKIIVSRKWGFTK 81 (101)
Q Consensus 40 vI~svr~k~~~~~~akEALrRAk~-KfPgrqkI~is~k~GFT~ 81 (101)
+.+.+-|+++..+.+.+|++.+.. -=||.-+|.|+.=..+..
T Consensus 59 ~~ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV~pVe~~~~ 101 (116)
T 1vfj_A 59 VRLEIGVSEPFVKPTVEAILKAARTGEVGDGKIFVLPVEKVYR 101 (116)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEECSEEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEhHHeEE
Confidence 468888899999999999998654 467888999987554433
No 56
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=39.70 E-value=46 Score=20.07 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=25.0
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
.+.+|+.|++|--.+ -..+.+.+.|+.+. +.-.+.|.+
T Consensus 43 gL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~r 83 (88)
T 1kwa_A 43 TLHVGDEIREINGISVANQTVEQLQKMLREMR----GSITFKIVP 83 (88)
T ss_dssp CCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC----EEEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhcCC----CcEEEEEEC
Confidence 589999999984433 25677788887763 344455544
No 57
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=39.64 E-value=65 Score=20.22 Aligned_cols=43 Identities=7% Similarity=0.044 Sum_probs=28.5
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
.+.+|++|++|--.+ .....+.+.++.+.-.....-.+.|.+.
T Consensus 60 GL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~ 105 (119)
T 2cs5_A 60 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 105 (119)
T ss_dssp CCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcc
Confidence 589999999986433 3356777888877543333456666654
No 58
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=39.48 E-value=53 Score=18.68 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=23.2
Q ss_pred eecCCCeEEEEeeCC-C--ChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHPD-S--NSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~--~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
++.+|++|++|--.+ . +.+.+.++|+.+ +....+.|.+
T Consensus 39 ~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~R 79 (81)
T 2rcz_A 39 NIQEGDVVLKINGTVTENMSLTDAKTLIERS----KGKLKMVVQR 79 (81)
T ss_dssp SCCTTCEEEEETTEECTTCCHHHHHHHHHTS----TTEEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCC----CCeEEEEEEe
Confidence 388999999984332 2 566677777653 2344455543
No 59
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=39.23 E-value=27 Score=24.80 Aligned_cols=30 Identities=17% Similarity=0.014 Sum_probs=25.7
Q ss_pred cceeeecCCCeEEEEeeCCCChHHHHHHHhh
Q 043998 30 ICQSRFKALQTIFKLFHPDSNSHHAQEALHR 60 (101)
Q Consensus 30 ~aA~RV~~GQvI~svr~k~~~~~~akEALrR 60 (101)
+.. ++.+|+.++-|-+-..|...|-+|++-
T Consensus 81 R~G-~l~~Ge~~v~VaVss~HR~~Af~A~~~ 110 (148)
T 3rpf_A 81 SLG-DVLIGQSSFLCVSMGKNRKNALELYEN 110 (148)
T ss_dssp EEE-EEETTCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEc-ccCCCCEEEEEEEEcccHHHHHHHHHH
Confidence 344 679999999999999999999988754
No 60
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=39.11 E-value=41 Score=22.40 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=31.8
Q ss_pred ccceeeecCCCeEEEEe---eCCCChHHHHHHHhhcccCCCCccEEEEecCCCcccc
Q 043998 29 GICQSRFKALQTIFKLF---HPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKF 82 (101)
Q Consensus 29 G~aA~RV~~GQvI~svr---~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~ 82 (101)
+.+| .+++|++|++|- +..-..+.+.++|+.+.- -..-.+.|.+......+
T Consensus 45 ~~~a-GL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~--G~~v~L~V~R~g~~~p~ 98 (113)
T 3soe_A 45 QWCQ-GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPV--GADVPLLILRGGPPSPT 98 (113)
T ss_dssp GGST-TCCTTCEEEEETTEECTTSCHHHHHHHHHHSCT--TCEEEEEEEESSCC---
T ss_pred HHhC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--CCEEEEEEEECCccCcc
Confidence 5678 999999999994 333344578888887531 11446677666544333
No 61
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=38.77 E-value=47 Score=20.45 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=24.9
Q ss_pred eecCCCeEEEEeeCC-CC--hHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD-SN--SHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~~--~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--.+ .+ ...+..+|+.+ ...-.+.|.+.
T Consensus 56 ~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~----g~~v~l~v~R~ 97 (105)
T 1wha_A 56 TLQVGDRVLSINGVDVTEARHDHAVSLLTAA----SPTIALLLERE 97 (105)
T ss_dssp SCCTTCEEEEESSCBCTTCCHHHHHHHHTSC----CSCEEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEEC
Confidence 489999999986443 22 56666667654 33445666654
No 62
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=38.53 E-value=29 Score=20.62 Aligned_cols=29 Identities=7% Similarity=0.158 Sum_probs=19.6
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcc
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAK 62 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk 62 (101)
++.+|++|++|--. ......+.++|+.+.
T Consensus 45 ~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 76 (90)
T 2q9v_A 45 RLRSGDELISVDGTPVIGKSHQLVVQLMQQAA 76 (90)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 48899999988533 234566777777653
No 63
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=38.45 E-value=46 Score=21.30 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=26.2
Q ss_pred eecCCCeEEEEeeCC----CChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD----SNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~----~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--.+ ...+.+.++|+.+. ..-.+.|.+.
T Consensus 72 ~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~----~~v~l~v~r~ 114 (128)
T 2db5_A 72 RLKENDQILAINHTPLDQNISHQQAIALLQQTT----GSLRLIVARE 114 (128)
T ss_dssp CCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCC----SEEEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHcCC----CeEEEEEEcC
Confidence 599999999986543 25677778887742 3445556554
No 64
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=38.24 E-value=21 Score=23.25 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=20.6
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRA 61 (101)
|+.+|++|++|--. .-....|.+.|+.+
T Consensus 73 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 103 (127)
T 1wg6_A 73 RLRMNDQLIAVNGETLLGKSNHEAMETLRRS 103 (127)
T ss_dssp TSCSCCBEEEETTEESTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence 59999999997532 33355788888876
No 65
>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}
Probab=38.01 E-value=65 Score=21.06 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=30.4
Q ss_pred eEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 40 TIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 40 vI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
+|..+.+++.+.+...++|..+.-+-||+....+.+
T Consensus 26 via~~~vkpg~~~ef~~~l~~~~r~EpGcl~y~l~~ 61 (122)
T 4dn9_A 26 LIGKMRATPGQRDALIAILVEGASSMPGCLSYVVAQ 61 (122)
T ss_dssp EEEEEEESTTCHHHHHHHHHHHTTTCTTEEEEEEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 667888999999999999999999999987665543
No 66
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=37.58 E-value=31 Score=22.41 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=20.1
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRA 61 (101)
|+.+|+.|++|--. .-....+.++|+.+
T Consensus 71 ~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~ 101 (118)
T 3b76_A 71 RIKTGDILLNVDGVELTEVSRSEAVALLKRT 101 (118)
T ss_dssp SSCTTCEEEEETTEEGGGSCHHHHHHHHHSC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 58999999998533 23556777788765
No 67
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=37.04 E-value=12 Score=25.74 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=18.7
Q ss_pred chHHHhhhcCCccccceeeecCCCeEEE
Q 043998 16 SVIQRQQSNQSSMGICQSRFKALQTIFK 43 (101)
Q Consensus 16 lq~GMR~AFGKP~G~aA~RV~~GQvI~s 43 (101)
..-|||+. -|.|||. |..+||.--.
T Consensus 55 ~A~G~RLd--IpAGTav-RFEPG~~r~V 79 (101)
T 4ep8_B 55 QAAGYRLN--IPAGTAV-RFEPGQKREV 79 (101)
T ss_dssp TTTTEEEC--SSTTCEE-EECTTCEEEE
T ss_pred hccCceec--ccCCCeE-eeCCCCeEEE
Confidence 34466664 5999999 9999996543
No 68
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=36.67 E-value=26 Score=23.03 Aligned_cols=32 Identities=13% Similarity=-0.040 Sum_probs=25.2
Q ss_pred EEEEeeCCCChHHHHHHHhhcccCCCCccEEEEe
Q 043998 41 IFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVS 74 (101)
Q Consensus 41 I~svr~k~~~~~~akEALrRAk~KfPgrqkI~is 74 (101)
.+.+-+++++++.+++||..+.+ |+-+-..+.
T Consensus 3 ~I~aIIr~~kl~~vk~AL~~~G~--~g~Tv~~v~ 34 (112)
T 3mhy_A 3 LVMAIIKPFKLDEVREALTSLGI--QGLTVSEVK 34 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTC--CCEEEEEEE
T ss_pred EEEEEECHHHHHHHHHHHHHCCC--CeEEEEEEE
Confidence 46677899999999999999964 666555444
No 69
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=36.59 E-value=39 Score=22.66 Aligned_cols=46 Identities=9% Similarity=-0.021 Sum_probs=29.6
Q ss_pred ccccceeeecCCCeEEEEeeCCC---ChHHHHHHHhhcccCCCC-ccEEEEecC
Q 043998 27 SMGICQSRFKALQTIFKLFHPDS---NSHHAQEALHRAKFKFPV-RQKIIVSRK 76 (101)
Q Consensus 27 P~G~aA~RV~~GQvI~svr~k~~---~~~~akEALrRAk~KfPg-rqkI~is~k 76 (101)
|.-.|. ++.+|++|++|--.+= +.+.+.++|+.++ |+ .-.+.|.+.
T Consensus 61 pA~~aG-~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~---~G~~v~l~V~R~ 110 (126)
T 1wif_A 61 AAASDG-ILQPGDVLISVGHANVLGYTLREFLKLLQNIT---IGTVLQIKAYRG 110 (126)
T ss_dssp SGGGCS-SSCTTCBEEEESSSCCTTCCHHHHHHHHTSCC---SSCEEEEEEESS
T ss_pred HHHHcC-CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC---CCCEEEEEEEEC
Confidence 333444 6899999999966553 4577777777532 33 335566665
No 70
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=36.52 E-value=73 Score=19.46 Aligned_cols=28 Identities=0% Similarity=-0.031 Sum_probs=18.4
Q ss_pred ecCCCeEEEEe---eCCCChHHHHHHHhhcc
Q 043998 35 FKALQTIFKLF---HPDSNSHHAQEALHRAK 62 (101)
Q Consensus 35 V~~GQvI~svr---~k~~~~~~akEALrRAk 62 (101)
+.+|++|++|- +..-....+.+.|+.+.
T Consensus 63 L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~ 93 (107)
T 3nfk_A 63 LNEGDQVVLINGRDIAEHTHDQVVLFIKASC 93 (107)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHCGG
T ss_pred cCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence 88899999884 33333456667777654
No 71
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=36.28 E-value=48 Score=21.92 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=24.9
Q ss_pred eecCCCeEEEEeeCC-CC--hHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD-SN--SHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~~--~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--.+ .+ .+.+.++|+.+ +..-.+.|.+.
T Consensus 148 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~ 189 (196)
T 3gsl_A 148 RLQIGDKILAVNSVGLEDVMHEDAVAALKNT----YDVVYLKVAKP 189 (196)
T ss_dssp CCCTTCEEEEETTEECSSCBHHHHHHHHHSC----CEEEEEEEEEE
T ss_pred CCCCCCEEEEECCCcCCCCCHHHHHHHHHcC----CCeEEEEEeCC
Confidence 499999999984332 33 67777888643 33445555553
No 72
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=36.27 E-value=49 Score=21.20 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=32.8
Q ss_pred EEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHHHHHcCcc
Q 043998 42 FKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWKSENRM 96 (101)
Q Consensus 42 ~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~~~~e~~l 96 (101)
....+.......+..+|..+-..+|. ..|+..++..|+. ..|.++.++..+
T Consensus 36 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~sD~G~~f~s---~~~~~~~~~~gi 86 (163)
T 3l3u_A 36 EAEVIPAETGQETAYFLLKLAGRWPV-KTVHTDNGSNFTS---TTVKAACDWAGI 86 (163)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHHSCC-CEEEECCCGGGGS---HHHHHHHHHHTC
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHcCC-cEEeecChHhhhh---HHHHHHHHHCCc
Confidence 34445666788888999888888875 4555556667764 455555444333
No 73
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=36.12 E-value=69 Score=19.18 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=23.4
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
++.+|++|++|--. ......+.++++.+. ..-.+.|.+
T Consensus 48 ~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~----~~v~l~v~R 88 (98)
T 2opg_A 48 RLWAGDQILEVNGIDLRKATHDEAINVLRQTP----QRVRLTLYR 88 (98)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTCC----SEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CeEEEEEEc
Confidence 58999999998533 222456666776543 334555554
No 74
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=35.89 E-value=74 Score=19.91 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=22.0
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
++.+|++|++|--. ......+.++++.+ ...-.+.|.+
T Consensus 67 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~----g~~v~l~v~R 107 (112)
T 2r4h_A 67 KMRIGDEILEINGETTKNMKHSRAIELIKNG----GRRVRLFLKR 107 (112)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTT----TTEEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEe
Confidence 48899999987533 22345566666543 2233555554
No 75
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=35.26 E-value=53 Score=20.60 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=23.5
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
++.+|++|++|--.+ .....+.++|+.+ ...-.+.|.+
T Consensus 68 ~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~----g~~v~l~v~r 108 (117)
T 2ehr_A 68 ALKTGDKILEVSGVDLQNASHSEAVEAIKNA----GNPVVFIVQS 108 (117)
T ss_dssp SCCTTCEEEEESSCBCTTCCHHHHHHHHHTS----CSSEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEE
Confidence 489999999985432 2355677777753 2233455544
No 76
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=35.17 E-value=30 Score=22.06 Aligned_cols=39 Identities=8% Similarity=0.039 Sum_probs=24.6
Q ss_pred eecCCCeEEEEee---CCCChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFH---PDSNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~---k~~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|-- .....+.+.+.|+.+ ...-.+.|.+.
T Consensus 60 ~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r~ 101 (117)
T 1v62_A 60 ALHPGDHILSIDGTSMEHCSLLEATKLLASI----SEKVRLEILPV 101 (117)
T ss_dssp CCCTTCBEEEETTEETTSCCHHHHHHHHHSC----SSEEEEEECCB
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCeEEEEEEEC
Confidence 4889999999843 334567777777742 23445555543
No 77
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=35.01 E-value=53 Score=20.99 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=23.9
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
++.+|++|++|--. ......+.++|+.+ ...-.+.|.+
T Consensus 72 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~----g~~v~l~v~R 112 (117)
T 2byg_A 72 RLQVGDRLLMVNNYSLEEVTHEEAVAILKNT----SEVVYLKVGK 112 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTC----CSEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEe
Confidence 48999999997533 23456777777754 2334455544
No 78
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=34.86 E-value=63 Score=19.97 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=24.4
Q ss_pred eecCCCeEEEEeeCCC---ChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHPDS---NSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k~~---~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
++.+|++|++|--.+= ....+.+.|+.+. ..-.+.|.+
T Consensus 56 ~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g----~~v~l~v~R 96 (111)
T 2dlu_A 56 RLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG----NSVRMLVAR 96 (111)
T ss_dssp CCCSSCEEEEESSCCCTTSCHHHHHHHHHHHC----SEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CeEEEEEEe
Confidence 4899999999865432 3466777777642 234555554
No 79
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=34.77 E-value=45 Score=22.20 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=28.8
Q ss_pred CeEEEEeeCCCChHHHHHHHhhccc-CCCCccEEEEecCC
Q 043998 39 QTIFKLFHPDSNSHHAQEALHRAKF-KFPVRQKIIVSRKW 77 (101)
Q Consensus 39 QvI~svr~k~~~~~~akEALrRAk~-KfPgrqkI~is~k~ 77 (101)
.+.+.+-|+++..+.+.+|+..+.. -=||.-||.|+.-.
T Consensus 61 k~kieivV~d~~ve~vv~~I~~~a~tg~~GDGkIFV~~ve 100 (115)
T 3l7p_A 61 KVKVEIVAHDAAVEEMITTISQAVKTGEVGDGKIFVSPVD 100 (115)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCC----CEEEEEECS
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCcEEEEEEhH
Confidence 4778999999999999999987754 46888899988643
No 80
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=34.15 E-value=36 Score=22.04 Aligned_cols=38 Identities=5% Similarity=0.033 Sum_probs=24.4
Q ss_pred eecCCCeEEEEe---eCCCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLF---HPDSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr---~k~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
++.+|++|++|- +.....+.+.++|+.+. ..-.+.|.+
T Consensus 83 ~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~----~~v~l~v~r 123 (128)
T 1nf3_C 83 LLAVNDEVLEVNGIEVSGKSLDQVTDMMIANS----RNLIITVRP 123 (128)
T ss_dssp CCCTTCEEEEETTEESTTCCHHHHHHHHHHTT----TSEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEE
Confidence 478899999983 43456677788887543 334455544
No 81
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=34.13 E-value=35 Score=20.41 Aligned_cols=39 Identities=8% Similarity=0.107 Sum_probs=25.7
Q ss_pred ecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecCC
Q 043998 35 FKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRKW 77 (101)
Q Consensus 35 V~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k~ 77 (101)
+.+|++|++|--.+ .+.+.+.++|+.+ ...-.+.|.+..
T Consensus 45 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r~~ 86 (91)
T 2vsp_A 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS----GKNVTLLVCGKK 86 (91)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTS----CSEEEEEEEC--
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEEeCC
Confidence 78999999995443 2677788888764 345566665543
No 82
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.99 E-value=74 Score=18.79 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=23.2
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
.+.+|++|++|--. ......+.+.|+.+. ..-.+.|.+
T Consensus 48 gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~----~~v~l~v~r 88 (93)
T 2dkr_A 48 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ----GSVKLVVRS 88 (93)
T ss_dssp CCCTTCBEEEETTEECTTSCHHHHHHHHHHCC----SEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CcEEEEEEe
Confidence 48899999998433 223566677776642 234455544
No 83
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=33.88 E-value=62 Score=19.99 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=24.8
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--.+ .....+..+++.+ ...-.+.|.+.
T Consensus 54 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~R~ 95 (110)
T 1um1_A 54 RLSLGDRILEVNGSSLLGLGYLRAVDLIRHG----GKKMRFLVAKS 95 (110)
T ss_dssp CCCTTCEEEEESSCBCSSCCHHHHHHHHHTC----CSEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEeC
Confidence 499999999986543 2345566666653 23445666664
No 84
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=33.63 E-value=45 Score=21.33 Aligned_cols=42 Identities=5% Similarity=0.131 Sum_probs=26.1
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEecCC
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSRKW 77 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~k~ 77 (101)
++.+|++|++|--. ....+.+.++|+.++- -..-.+.|.+..
T Consensus 62 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~--g~~v~l~v~R~~ 106 (123)
T 1ueq_A 62 KMETGDVIVYINEVCVLGHTHADVVKLFQSVPI--GQSVNLVLCRGY 106 (123)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHHHHTSCT--TCEEEEEEEESC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC--CCeEEEEEEeCC
Confidence 58999999998533 2246677788876421 123456666543
No 85
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=32.98 E-value=49 Score=22.21 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=24.8
Q ss_pred EEEEeeCCCChHHHHHHHhhcccCCCCccEEEEe
Q 043998 41 IFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVS 74 (101)
Q Consensus 41 I~svr~k~~~~~~akEALrRAk~KfPgrqkI~is 74 (101)
.+.+-++++.++.+++||..+. +|+-+-..+.
T Consensus 3 ~I~AIIrp~kl~~Vk~AL~~~G--~~g~Tv~~V~ 34 (119)
T 3ncq_A 3 KIEAIVRAEKFPEVKAALEERG--FYGMTVTDVK 34 (119)
T ss_dssp EEEEEECTTTHHHHHHHHHHTT--CCCEEEEEEE
T ss_pred EEEEEECHHHHHHHHHHHHHCC--CCeEEEEeeE
Confidence 4667789999999999999986 4666554443
No 86
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=32.74 E-value=92 Score=21.08 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=31.4
Q ss_pred EeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHHHHHc
Q 043998 44 LFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWKSE 93 (101)
Q Consensus 44 vr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~~~~e 93 (101)
..++......+.++|...-..++.+. |+-.++..||. ..|.++.++
T Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~g~~~-i~sDnG~~F~s---~~~~~~~~~ 133 (210)
T 3f9k_A 88 EVIPQESGRQTALFLLKLASRWPITH-LHTDNGANFTS---QEVKMVAWW 133 (210)
T ss_dssp EEESSCCHHHHHHHHHHHHTTSCCSE-EEECCCTTTSS---HHHHHHHHH
T ss_pred EEeCCcchHHHHHHHHHHHHHcCCCE-EEeCCCchhhH---HHHHHHHHH
Confidence 44556778889999998888887643 66667777765 444444443
No 87
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=32.44 E-value=70 Score=21.42 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=31.8
Q ss_pred CeEEEEeeCCCChHHHHHHHhhcc-cCCCCccEEEEecC
Q 043998 39 QTIFKLFHPDSNSHHAQEALHRAK-FKFPVRQKIIVSRK 76 (101)
Q Consensus 39 QvI~svr~k~~~~~~akEALrRAk-~KfPgrqkI~is~k 76 (101)
.+.+.+-|+++..+.+.+++..+. --=||.-||.|+.-
T Consensus 58 K~~ieivV~de~ve~Vv~~I~~~a~TG~~GDGkIFV~~V 96 (118)
T 3t9z_A 58 KTKVEVVVSDDAVDEVVEAIVSSARTGKFGDGRIFVIPV 96 (118)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEEC
T ss_pred eEEEEEEEChHHHHHHHHHHHHHhcCCCCCCeEEEEEEh
Confidence 378899999999999999998854 45688899998853
No 88
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=32.07 E-value=81 Score=21.16 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=28.3
Q ss_pred cccceeeecCCCeEEEEe---eCCCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 28 MGICQSRFKALQTIFKLF---HPDSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 28 ~G~aA~RV~~GQvI~svr---~k~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
-|.|+..+++|++|++|- +.......+..+|+.+. ..-.+.|.+
T Consensus 34 ~spA~~gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~----~~v~l~v~r 80 (195)
T 2qbw_A 34 EGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ----NTVELIIVR 80 (195)
T ss_dssp TSTTTTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCC----SEEEEEEEE
T ss_pred CChHHhCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEE
Confidence 344553478999999983 33344567778888764 244555555
No 89
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=31.94 E-value=50 Score=21.05 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=27.7
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEecCCC
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSRKWG 78 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~k~G 78 (101)
++.+|+.|++|--. ......+.+.|+.+. +.-.+.|.+..+
T Consensus 63 ~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~r~~~ 106 (125)
T 3hpk_A 63 TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK----GEVTIHYNKLQA 106 (125)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHSC----SEEEEEEEEECS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEECCC
Confidence 59999999998533 235677888888753 345666666433
No 90
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.72 E-value=80 Score=19.24 Aligned_cols=42 Identities=12% Similarity=0.081 Sum_probs=25.9
Q ss_pred eecCCCeEEEEee---CCCChHHHHHHHhhcccCCCCccEEEEecCCCc
Q 043998 34 RFKALQTIFKLFH---PDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGF 79 (101)
Q Consensus 34 RV~~GQvI~svr~---k~~~~~~akEALrRAk~KfPgrqkI~is~k~GF 79 (101)
-+.+|++|++|-- .......+.++++.+ ...-.+.|.+....
T Consensus 49 Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~r~~~~ 93 (106)
T 2eei_A 49 GVLADDHLIEVNGENVEDASHEEVVEKVKKS----GSRVMFLLVDKETD 93 (106)
T ss_dssp TCCSSEEEEEETTEECTTCCHHHHHHHHHHH----CSEEEEEECCTTTS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCeEEEEEEcCchh
Confidence 3799999999843 333446666777654 23445666665443
No 91
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=31.51 E-value=41 Score=20.76 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=25.1
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--.+ .....+.++++.+ ...-.+.|.+.
T Consensus 60 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~----g~~v~l~v~R~ 101 (108)
T 1q7x_A 60 RIHKGDRVLAVNGVSLEGATHKQAVETLRNT----GQVVHLLLEKG 101 (108)
T ss_dssp CCCSSCEEEEETTEECBSCTTSHHHHHHHHT----TSEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEeC
Confidence 499999999986432 2456677777764 23445566553
No 92
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=31.49 E-value=46 Score=19.98 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=24.4
Q ss_pred eecCCCeEEEEeeCC-CC--hHHHHHHHhhcccCCCC-ccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD-SN--SHHAQEALHRAKFKFPV-RQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~~--~~~akEALrRAk~KfPg-rqkI~is~k 76 (101)
++.+|++|++|--.+ .+ .+.+.++|+. ++ .-.+.|.+.
T Consensus 50 ~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-----~g~~v~l~v~R~ 91 (97)
T 2jil_A 50 TIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-----CGQEAALLIEYD 91 (97)
T ss_dssp CCCTTCEEEEETTEECSSCCHHHHHHHHHH-----SCSEEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc-----CCCeEEEEEEeC
Confidence 489999999985332 33 6777777776 33 335555553
No 93
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=31.36 E-value=25 Score=22.83 Aligned_cols=38 Identities=21% Similarity=0.028 Sum_probs=26.9
Q ss_pred EeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccc
Q 043998 44 LFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTK 81 (101)
Q Consensus 44 vr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~ 81 (101)
..+.....+.+.++|..+-..++.+..|+..++..|+.
T Consensus 44 ~~~~~~~~~~v~~~l~~~~~~~g~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 44 TQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTS 81 (162)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHCCCSEEECCSCHHHHS
T ss_pred EECCCccHHHHHHHHHHHHHHHCCCeEEEeCCchhhhh
Confidence 34456778888899988876666666666666767765
No 94
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=31.20 E-value=59 Score=22.26 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=30.5
Q ss_pred CCeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCC
Q 043998 38 LQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWG 78 (101)
Q Consensus 38 GQvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~G 78 (101)
-.+.+.|-+.++..+.+.+||..+... |.-||.|+.-..
T Consensus 77 pKvkiEivv~d~~ve~vv~aI~~~a~t--g~IKIfV~pVe~ 115 (120)
T 3ce8_A 77 EFCKFEIMHPAAQQAALLTALALVCKH--NPCRYWIMPIYQ 115 (120)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHTTT--SCCEEEEEECSC
T ss_pred ceEEEEEEECHHHHHHHHHHHHHHcCC--CCEEEEEEEhHH
Confidence 456889999999999999999999644 233998876443
No 95
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=30.99 E-value=21 Score=23.45 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=21.3
Q ss_pred CCeEEEEeeCCCChHHHHHHHhhcccCCCCc
Q 043998 38 LQTIFKLFHPDSNSHHAQEALHRAKFKFPVR 68 (101)
Q Consensus 38 GQvI~svr~k~~~~~~akEALrRAk~KfPgr 68 (101)
+...+.++. ++.+.|.++|+.+.|+++..
T Consensus 110 ~~~~~~i~~--~d~~~A~~~L~~~g~~v~~~ 138 (144)
T 2f06_A 110 NVANVVIRP--SNMDKCIEVLKEKKVDLLAA 138 (144)
T ss_dssp TEEEEEEEE--SCHHHHHHHHHHTTCEEECH
T ss_pred CcEEEEEEe--CCHHHHHHHHHHcCCEEecH
Confidence 344445555 58999999999999987543
No 96
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=30.46 E-value=50 Score=19.97 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=18.8
Q ss_pred ecCCCeEEEEeeCC-CC--hHHHHHHHhhc
Q 043998 35 FKALQTIFKLFHPD-SN--SHHAQEALHRA 61 (101)
Q Consensus 35 V~~GQvI~svr~k~-~~--~~~akEALrRA 61 (101)
+.+|++|++|--.+ .+ .+.+.++|+.+
T Consensus 55 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 84 (96)
T 2ego_A 55 LTPGDTIASVNGLNVEGIRHREIVDIIKAS 84 (96)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 78899999885443 22 46777777775
No 97
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=30.33 E-value=1e+02 Score=19.21 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=20.2
Q ss_pred eecCCCeEEEEeeCC-CC--hHHHHHHHhh
Q 043998 34 RFKALQTIFKLFHPD-SN--SHHAQEALHR 60 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~~--~~~akEALrR 60 (101)
.+.+|++|++|--.+ .+ .+.+.++|+.
T Consensus 61 gL~~GD~I~~ing~~v~~~~~~~~~~~l~~ 90 (114)
T 1uew_A 61 KLKVGDRILAVNGQSIINMPHADIVKLIKD 90 (114)
T ss_dssp SCCTTCBEEEETTBCTTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 699999999986554 23 4778888875
No 98
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=30.09 E-value=88 Score=18.47 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=17.5
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRA 61 (101)
++.+|++|++|--.+ .....+.+.|+.+
T Consensus 51 ~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 81 (94)
T 2fe5_A 51 RLQIGDRLLAVNNTNLQDVRHEEAVASLKNT 81 (94)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 489999999885332 2235555666553
No 99
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=29.90 E-value=78 Score=20.30 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=25.9
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
.+.+|++|++|--. ......+.+.|+.+. ..-.+.|.+.
T Consensus 71 gL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~----~~v~l~v~r~ 112 (120)
T 2iwo_A 71 KLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS----GSIEMQVVAG 112 (120)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHHHHHHCC----SEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEEC
Confidence 78999999997533 334577788888763 3345555543
No 100
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=29.86 E-value=50 Score=20.53 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=25.3
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
|+.+|++|++|--.+ .....+..+++.+. ..-.+.|.+.
T Consensus 53 ~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g----~~v~l~v~R~ 94 (113)
T 2g5m_B 53 RIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK----GRVRFMIGRE 94 (113)
T ss_dssp CSCTTCBEEEETTEECSSCCHHHHHHHHHHSC----SSCEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhcCC----CeEEEEEEeC
Confidence 599999999985432 23556777777752 3446666553
No 101
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=29.69 E-value=46 Score=25.84 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=33.3
Q ss_pred EEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHH
Q 043998 41 IFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADY 87 (101)
Q Consensus 41 I~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~ 87 (101)
+-++.+-+.|.+.++|=|.|--+.+| ++.|.+.-.|-.|+.+||
T Consensus 204 ~gdaHIY~nh~e~~~~qL~R~p~~~P---~l~i~~~~~~~d~~~~Df 247 (264)
T 3qj7_A 204 GGDCHIYDNHVEQVRLQLSREPRPYP---KLLLADRDSIFEYTYEDI 247 (264)
T ss_dssp EEEEEEEGGGHHHHHHHHTSCCCCCC---EEEEECCSSGGGCCGGGE
T ss_pred EEEEEEEHHHHHHHHHHhcCCCCCCC---EEEeCCCCChhcCCHhHE
Confidence 44567889999999999999887777 444455567777777776
No 102
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=29.65 E-value=20 Score=25.46 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=17.3
Q ss_pred HHHhhhcCCccccceeeecCCCeEEE
Q 043998 18 IQRQQSNQSSMGICQSRFKALQTIFK 43 (101)
Q Consensus 18 ~GMR~AFGKP~G~aA~RV~~GQvI~s 43 (101)
-|||+. -|.|||. |..|||.--.
T Consensus 63 ~G~RLd--IpAGTav-RFEPG~~k~V 85 (126)
T 4ac7_B 63 IGRRLN--IPSGTAA-RFEPGEEMEV 85 (126)
T ss_dssp TTEEEC--SCTTCEE-EECTTCEEEE
T ss_pred cCcccc--ccCCCeE-eeCCCCeEEE
Confidence 356654 4999999 9999996433
No 103
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=29.65 E-value=20 Score=25.46 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=17.3
Q ss_pred HHHhhhcCCccccceeeecCCCeEEE
Q 043998 18 IQRQQSNQSSMGICQSRFKALQTIFK 43 (101)
Q Consensus 18 ~GMR~AFGKP~G~aA~RV~~GQvI~s 43 (101)
-|||+. -|.|||. |..|||.--.
T Consensus 63 ~G~RLd--IpAGTav-RFEPG~~k~V 85 (126)
T 4ubp_B 63 IGRRLN--IPSGTAA-RFEPGEEMEV 85 (126)
T ss_dssp TTEEEC--SCTTCEE-EECTTCEEEE
T ss_pred cCcccc--ccCCCeE-eeCCCCeEEE
Confidence 356654 4999999 9999996433
No 104
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=29.46 E-value=56 Score=19.26 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=25.4
Q ss_pred eecCCCeEEEEeeCC-C--ChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD-S--NSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~--~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--.+ . ....+.++|+.+. ....+.|.+.
T Consensus 41 ~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~r~ 82 (92)
T 3cyy_A 41 NIQEGDVVLKINGTVTENMSLTDAKTLIERSK----GKLKMVVQRD 82 (92)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTTT----TEEEEEEEC-
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CcEEEEEEeC
Confidence 489999999985432 3 5677777777632 3445666553
No 105
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=29.00 E-value=65 Score=20.53 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=26.0
Q ss_pred eecCCCeEEEEeeCC-CC--hHHHHHHHhhcccCCCCccEEEEecCC
Q 043998 34 RFKALQTIFKLFHPD-SN--SHHAQEALHRAKFKFPVRQKIIVSRKW 77 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~~--~~~akEALrRAk~KfPgrqkI~is~k~ 77 (101)
++.+|++|++|--.+ .+ .+.+.++|+.+ ...-.+.|.+..
T Consensus 64 ~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~~ 106 (129)
T 2dmz_A 64 HIQVNDKIVAVDGVNIQGFANHDVVEVLRNA----GQVVHLTLVRRK 106 (129)
T ss_dssp CCCSSCBEEEETTBCCTTCCHHHHHHHHHHC----CSSEEEEEEEES
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEeCC
Confidence 589999999986432 33 67788888762 223456666543
No 106
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=28.78 E-value=45 Score=20.59 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=23.6
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
++.+|++|++|--.+ .....+.++|+.+ ...-.+.|.+
T Consensus 58 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~R 98 (107)
T 1wf8_A 58 RIQVNDQIVEVDGISLVGVTQNFAATVLRNT----KGNVRFVIGR 98 (107)
T ss_dssp SSCTTCBEEEETTEECBSCCHHHHHHHHHHC----CSEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhcC----CCeEEEEEEe
Confidence 589999999985432 2345666777764 2344555544
No 107
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=28.64 E-value=34 Score=24.09 Aligned_cols=39 Identities=18% Similarity=-0.020 Sum_probs=28.9
Q ss_pred EeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCcccc
Q 043998 44 LFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKF 82 (101)
Q Consensus 44 vr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~ 82 (101)
..+.....+.+.++|..|-..++.+..|+..++..|+.-
T Consensus 43 ~~~~~~~~~~v~~~l~~~~~~~g~p~~i~sDnG~~f~s~ 81 (238)
T 1c0m_A 43 TQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSK 81 (238)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHCCCSEEEECSCHHHHSH
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCCcEEEECCCCccccH
Confidence 344477888999999988777777777777777777653
No 108
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=28.63 E-value=95 Score=20.80 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=33.2
Q ss_pred eEEEEeeC--CC--ChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHHHHHc
Q 043998 40 TIFKLFHP--DS--NSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWKSE 93 (101)
Q Consensus 40 vI~svr~k--~~--~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~~~~e 93 (101)
++.-+|+. +| +++.=+++|+...- |-..|.....-|.+ ++|.+|.+|.+.
T Consensus 5 ~~~Y~RvSt~~Q~~sl~~Q~~~l~~~~~---g~~~i~~D~~SG~~-~~Rp~l~~ll~~ 58 (143)
T 3ilx_A 5 VILYARVSSNTQKDDLANQVKYLEEQVK---EYDLVITDIGSGLN-MKRKGFLKLLRM 58 (143)
T ss_dssp EEEEEEESCCC-CTHHHHHHHHHHHHCS---CCSEEEEEESCTTC-TTCHHHHHHHHH
T ss_pred EEEEEEECchhhhhcHHHHHHHHHHHhC---CCeEEEEcCccccc-CCcHHHHHHHHH
Confidence 34445543 45 67777788887654 33337777777876 899999999864
No 109
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=28.23 E-value=82 Score=19.52 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=20.9
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcc
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAK 62 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk 62 (101)
++.+|+.|++|--.+ ...+.+.+.|+.+.
T Consensus 62 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 93 (108)
T 2d92_A 62 GLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP 93 (108)
T ss_dssp CCCTTCEEEEESSCBCTTCCHHHHHHHHHHSC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 589999999986543 23567888887753
No 110
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=28.15 E-value=59 Score=19.93 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=24.0
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--.+ .....+.++|+.+ ...-.+.|.+.
T Consensus 56 ~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~----g~~v~l~v~R~ 97 (106)
T 3axa_A 56 RLAAGDQLLSVDGRSLVGLSQERAAELMTRT----SSVVTLEVAKQ 97 (106)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTC----CSEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEeC
Confidence 599999999985432 2355666667653 22345656553
No 111
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=28.11 E-value=30 Score=27.35 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=14.7
Q ss_pred CCCccccCHHHHHHHHH
Q 043998 76 KWGFTKFSRADYLRWKS 92 (101)
Q Consensus 76 k~GFT~~~~~e~~~~~~ 92 (101)
.+||++|++.||..+..
T Consensus 107 ~eGF~~W~rrdf~~Fi~ 123 (304)
T 1ofc_X 107 SQGFTAWTKRDFNQFIK 123 (304)
T ss_dssp TSSCTTCCHHHHHHHHH
T ss_pred HhhhcccCHHHHHHHHH
Confidence 68999999999988654
No 112
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=27.77 E-value=60 Score=20.77 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=17.8
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRA 61 (101)
++.+|++|++|--. ....+.+.+.|+.+
T Consensus 76 ~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~ 106 (121)
T 2kom_A 76 RLKAGDRLIEVNGVDLVGKSQEEVVSLLRST 106 (121)
T ss_dssp CCCSSSEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Confidence 38889999887432 22246666667654
No 113
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=27.50 E-value=70 Score=19.38 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=24.0
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--. ......+.++++.+. ..-.+.|.+.
T Consensus 52 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g----~~v~l~v~R~ 93 (102)
T 2i1n_A 52 RLGVNDCVLRVNEVDVSEVVHSRAVEALKEAG----PVVRLVVRRR 93 (102)
T ss_dssp CCCTTCEEEEETTEECSSCCHHHHHHHHHHSC----SEEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEeC
Confidence 58999999998533 233566777777632 3345555543
No 114
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=27.40 E-value=73 Score=20.25 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=25.9
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecCC
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRKW 77 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k~ 77 (101)
++.+|++|++|--.+ .....+.++|+.+ +..-.+.|.+..
T Consensus 69 ~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~----~~~v~l~v~R~~ 111 (124)
T 2daz_A 69 RMRIGDELLEINNQILYGRSHQNASAIIKTA----PSKVKLVFIRNE 111 (124)
T ss_dssp CCCTTCEECEESSCBCTTSCHHHHHHHHHHS----CSEEEEEEEECT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEeCC
Confidence 599999999986443 2345566677665 335566666654
No 115
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=27.26 E-value=1e+02 Score=18.18 Aligned_cols=37 Identities=5% Similarity=0.155 Sum_probs=21.7
Q ss_pred ecCCCeEEEEeeCC-CCh--HHHHHHHhhcccCCCCccEEEEec
Q 043998 35 FKALQTIFKLFHPD-SNS--HHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 35 V~~GQvI~svr~k~-~~~--~~akEALrRAk~KfPgrqkI~is~ 75 (101)
+.+|++|++|--.+ .+. +.+.++|+.+ ...-.+.|.+
T Consensus 46 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~r 85 (90)
T 2he4_A 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKAR----EDEARLLVVG 85 (90)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTS----SSEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCcEEEEEEc
Confidence 78899998884332 222 6666667653 3344555544
No 116
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.85 E-value=1.1e+02 Score=18.51 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=26.0
Q ss_pred ecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecCCC
Q 043998 35 FKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRKWG 78 (101)
Q Consensus 35 V~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k~G 78 (101)
+.+|++|++|--.+ ...+.+.++|+.+ .....+.|.+..+
T Consensus 48 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r~~~ 90 (102)
T 2d90_A 48 LKNNDLVVAVNGKSVEALDHDGVVEMIRKG----GDQTTLLVLDKEA 90 (102)
T ss_dssp CCTTCEEEEESSCBCTTSCHHHHHHHHHHS----TTEEEEEECSTTC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEEECCC
Confidence 78999999996543 2246777777763 3345666655444
No 117
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=26.82 E-value=68 Score=18.84 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=25.5
Q ss_pred eecCCCeEEEEeeCC-CC--hHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD-SN--SHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~~--~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
-+.+|++|++|--.+ .+ .+.+.++|+.+. ..-.+.|.+.
T Consensus 43 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~R~ 84 (87)
T 2pa1_A 43 DLRPGDIIVAINGESAEGMLHAEAQSKIRQSP----SPLRLQLDRI 84 (87)
T ss_dssp TCCTTCEEEEETTEESTTCCHHHHHHHHHTCC----SSEEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEec
Confidence 478999999985432 23 577888887653 4455665553
No 118
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=26.73 E-value=1.3e+02 Score=22.90 Aligned_cols=47 Identities=6% Similarity=0.048 Sum_probs=32.9
Q ss_pred EEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHH
Q 043998 41 IFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLR 89 (101)
Q Consensus 41 I~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~ 89 (101)
.+.|.|.+..+..+++||.-+.+++- ...|.-... -.+.++.++..+
T Consensus 173 ~~~v~t~p~~~~~V~~aL~~~g~~~~-~aei~~~P~-~~v~l~~e~~~~ 219 (247)
T 4f3q_A 173 SIDVTTLPEDFEKIRNAMKAADLNPS-HAEVTVLAS-TEVGLDKDSAEQ 219 (247)
T ss_dssp CEEEEECGGGHHHHHHHHHHTTCCCS-EEEEEEEES-SCEECCHHHHHH
T ss_pred eEEEEECHHHHHHHHHHHHHcCCCee-EEEEEEecC-CccccCHHHHHH
Confidence 67899999999999999999988854 344433332 345566655443
No 119
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=26.58 E-value=1.4e+02 Score=22.72 Aligned_cols=49 Identities=4% Similarity=-0.104 Sum_probs=34.7
Q ss_pred eEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHHH
Q 043998 40 TIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLRW 90 (101)
Q Consensus 40 vI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~~ 90 (101)
-.+.|.|.+..+..+++||.-+.+++-...-..+... .+.++.++..++
T Consensus 171 ~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~--~v~l~~e~~~~~ 219 (240)
T 1mw7_A 171 DKIIIRGDYNSFKLLNEGFESLKLPILKASLQRIATT--PIELNDEQMELT 219 (240)
T ss_dssp TEEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESS--CBCCCHHHHHHH
T ss_pred ceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEeCCCC--CcccCHHHHHHH
Confidence 4588999999999999999999888654333344433 456666655443
No 120
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=26.46 E-value=90 Score=20.15 Aligned_cols=71 Identities=14% Similarity=0.044 Sum_probs=41.3
Q ss_pred CcchHHHhhhcCCccccceeeecCCCe-----------EEEEe-----eCCCChHHHH---HHHhhcccCCCCccEEEEe
Q 043998 14 RPSVIQRQQSNQSSMGICQSRFKALQT-----------IFKLF-----HPDSNSHHAQ---EALHRAKFKFPVRQKIIVS 74 (101)
Q Consensus 14 ~~lq~GMR~AFGKP~G~aA~RV~~GQv-----------I~svr-----~k~~~~~~ak---EALrRAk~KfPgrqkI~is 74 (101)
.-+++-|..+||||....+-.+..++. ++.|. +.+++...++ ++|...--.-|-+..|.+.
T Consensus 21 ~~l~~ala~~lgkPe~~~~V~~~~~~~~~~gg~~dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~ 100 (125)
T 2wkb_A 21 SEIEDAISNILGKPVAYIMSNYDYQKNLRFSGSNEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIEFR 100 (125)
T ss_dssp HHHHHHHHHHHCSCCTTCEEEEEECTTCEETTBCSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHhCCCHHHEEEEEEcCCceEeCCCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEE
Confidence 457788999999999866546665553 34443 3344443333 3454444444556666665
Q ss_pred c----CCCccccCH
Q 043998 75 R----KWGFTKFSR 84 (101)
Q Consensus 75 ~----k~GFT~~~~ 84 (101)
. .|||..-+.
T Consensus 101 e~~~~~wg~~G~~~ 114 (125)
T 2wkb_A 101 DCSAQNFAFSGSLF 114 (125)
T ss_dssp C----CEEEEGGGT
T ss_pred ECCHHHeEECCEEh
Confidence 3 788765443
No 121
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=26.28 E-value=96 Score=20.92 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=23.2
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
++++|++|++|--. .-....+.++|+.+ +..-.+.|.+
T Consensus 154 ~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~----~~~v~L~V~R 194 (206)
T 3r0h_A 154 KLQRGDIITKFNGDALEGLPFQVCYALFKGA----NGKVSMEVTR 194 (206)
T ss_dssp HCCTTCEEEEETTEECTTCCHHHHHHHHHTC----CSEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEe
Confidence 48999999998432 22335667777653 3344555554
No 122
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=25.65 E-value=63 Score=19.53 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=22.9
Q ss_pred eecCCCeEEEEee---CCCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 34 RFKALQTIFKLFH---PDSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 34 RV~~GQvI~svr~---k~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
++.+|+.|++|-- .......+..+++.+. ....+.|.+
T Consensus 53 ~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~----~~v~l~v~r 93 (104)
T 3i4w_A 53 ELRKGDQILSVNGVDLRNASHEQAAIALKNAG----QTVTIIAQY 93 (104)
T ss_dssp CCCTTEEEEEETTEECTTCCHHHHHHHHHTSC----SEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEE
Confidence 4899999999843 3334455666666532 334555554
No 123
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=24.74 E-value=78 Score=18.94 Aligned_cols=39 Identities=5% Similarity=-0.031 Sum_probs=25.1
Q ss_pred ecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecCC
Q 043998 35 FKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRKW 77 (101)
Q Consensus 35 V~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k~ 77 (101)
+.+|++|++|--.+ ...+.+.++|+.+ ...-.+.|.+..
T Consensus 48 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r~~ 89 (96)
T 2v90_A 48 MQAGDRLVAVAGESVEGLGHEETVSRIQGQ----GSCVSLTVVDPE 89 (96)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHHTT----TTEEEEEEECCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEECCC
Confidence 78899999985443 2256777777763 334456666544
No 124
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=24.68 E-value=39 Score=19.79 Aligned_cols=28 Identities=4% Similarity=0.056 Sum_probs=17.4
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRA 61 (101)
++.+|++|++|--.+ ...+.+.++|+.+
T Consensus 43 ~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 73 (85)
T 2i04_A 43 KMETGDVIVSVNDTCVLGHTHAQVVKIFQSI 73 (85)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 388888888874432 1345566666654
No 125
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=24.26 E-value=66 Score=23.76 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.0
Q ss_pred eecCCCeEEEEeeCC
Q 043998 34 RFKALQTIFKLFHPD 48 (101)
Q Consensus 34 RV~~GQvI~svr~k~ 48 (101)
+|+.||+|+.+...+
T Consensus 78 ~V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 78 EVKAGDVLFTIDSAD 92 (359)
T ss_dssp EECTTCEEEEEECSS
T ss_pred EEcCCCEEEEEChHH
Confidence 899999999997653
No 126
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=24.24 E-value=78 Score=21.53 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=23.4
Q ss_pred eecCCCeEEEEeeCC-CC--hHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD-SN--SHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~~--~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|++|++|--.+ .+ .+.+.++|+.+ ...-.+.|.+.
T Consensus 153 ~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~ 194 (196)
T 1p1d_A 153 TLELGDKLLAIDNIRLDSCSMEDAVQILQQC----EDLVKLKIRKD 194 (196)
T ss_dssp CCCTTCEEEEETTEEGGGCCHHHHHHHHHHC----TTCEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCEEEEEEEeC
Confidence 378888888875432 23 56667777664 34445555543
No 127
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=24.21 E-value=55 Score=18.57 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=13.1
Q ss_pred eecCCCeEEEEeeCC
Q 043998 34 RFKALQTIFKLFHPD 48 (101)
Q Consensus 34 RV~~GQvI~svr~k~ 48 (101)
+|+.||+|+.+...+
T Consensus 26 ~V~~G~~l~~i~~~~ 40 (74)
T 2d5d_A 26 RVRVGQGLLVLEAMK 40 (74)
T ss_dssp EECTTCEEEEEEETT
T ss_pred EeCCCCEEEEEeccc
Confidence 899999999998754
No 128
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=24.15 E-value=1.3e+02 Score=18.94 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=24.5
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
++.+|+.|++|--.+ .....+.++|+.+ ...-.+.|.+.
T Consensus 67 ~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~ 108 (117)
T 1ujd_A 67 KLMEGMQVLEWNGIPLTSKTYEEVQSIISQQ----SGEAEICVRLD 108 (117)
T ss_dssp SCCTTCEEEEETTEECTTCCHHHHHHHHSCC----SSCEEEEEESS
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhcC----CCEEEEEEEEC
Confidence 489999999985332 2246677777653 23445666553
No 129
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=24.15 E-value=85 Score=25.11 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=35.2
Q ss_pred cCCCe---EEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHH
Q 043998 36 KALQT---IFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADY 87 (101)
Q Consensus 36 ~~GQv---I~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~ 87 (101)
.+|.. +-++.+-+.|.+.++|=|.|--+.+| ++.|.+.-.|..|+.+||
T Consensus 253 ~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P---~l~in~~~~i~df~~eDf 304 (321)
T 4dq1_A 253 EVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPP---TLKINSDKSIFDINYEDL 304 (321)
T ss_dssp EEEEEEEEEEEEEEETTSHHHHHHHHHSCCCCCC---EEEECCCSCGGGCCGGGE
T ss_pred cceEEEEEEEEEEEeHHHHHHHHHHhCCCCCCCC---EEEECCCCCcccCCHhHE
Confidence 44544 44557889999999999999888776 556654456666766665
No 130
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=24.00 E-value=43 Score=23.03 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=30.8
Q ss_pred eCCCChHHHHHHHhhcccCCCCccEEEEecCCCccccCHHHHHHHHHc
Q 043998 46 HPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKFSRADYLRWKSE 93 (101)
Q Consensus 46 ~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~~~~e~~~~~~e 93 (101)
+.+|+++.=+++|+.+.. .+|.....-|- +++|.+|.+|.+.
T Consensus 10 t~~Q~~~~Q~~~l~~~~~-----~~i~~D~~SG~-~~~Rp~l~~ll~~ 51 (193)
T 3uj3_X 10 TNDQNTDLQRNALVCAGC-----EQIFEDKLSGT-RTDRPGLKRALKR 51 (193)
T ss_dssp SCCSSHHHHHHHHHHTTC-----CBCCEECCSSC-SSSCSTTHHHHHT
T ss_pred CcccCHHHHHHHHHHcCC-----cEEEEECCcCC-CCCCHHHHHHHHH
Confidence 457888888899987643 46766665564 4789999998874
No 131
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=23.99 E-value=2e+02 Score=21.97 Aligned_cols=49 Identities=6% Similarity=0.049 Sum_probs=34.3
Q ss_pred CeEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEecCCCcccc-CHHHHHH
Q 043998 39 QTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSRKWGFTKF-SRADYLR 89 (101)
Q Consensus 39 QvI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~k~GFT~~-~~~e~~~ 89 (101)
+-.+.|.|.+..+..+++||.-+.+++-...-..+... .+.+ +.++..+
T Consensus 168 ~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~--~v~l~~~e~~~~ 217 (249)
T 1lfp_A 168 EEVHIIYTVPEELYEVKENLEKLGVPIEKAQITWKPIS--TVQINDEETAQK 217 (249)
T ss_dssp SSEEEEEECGGGHHHHHHHHHTTTCCCSEEEEEEEESS--CEECCCHHHHHH
T ss_pred CceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEECCCC--ceecCCHHHHHH
Confidence 45688999999999999999999888654333344332 3566 5555443
No 132
>4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A*
Probab=23.59 E-value=1.1e+02 Score=26.72 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=40.6
Q ss_pred HhhhcCC----ccccceeeecCCCeEEEEeeC-------------------CCChHHHHHHHhhcccCC---CCccEEEE
Q 043998 20 RQQSNQS----SMGICQSRFKALQTIFKLFHP-------------------DSNSHHAQEALHRAKFKF---PVRQKIIV 73 (101)
Q Consensus 20 MR~AFGK----P~G~aA~RV~~GQvI~svr~k-------------------~~~~~~akEALrRAk~Kf---PgrqkI~i 73 (101)
...|||+ |-||+- |..||+.--.--|. +.+.+.+.+.++...|.- |.--.-.+
T Consensus 184 r~~~~g~rl~~~~g~~~-rf~pg~~~~v~l~~~~g~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (840)
T 4gy7_A 184 RRKAYGMRLNIAAGTAV-RFEPGDCKSVTLVSIEGNKVIRGGNAIADGPVNETNLEAAMHAVRSKGFGHEEEKDASEGFT 262 (840)
T ss_dssp HHHHTTEEECSCTTCEE-EECTTCEEEEEEEECCTTCEECSTTSSSCEESSHHHHHHHHHHHHHHTCCBCCCTTCCEEEC
T ss_pred hhhhccccccccCCCce-eeCCCCeeEEEEEEecCceEEecCcccccCccChhHHHHHHHHHHHcCCCCCCCCccccccc
Confidence 3456665 999999 99999976554443 333444444444444421 11111122
Q ss_pred e---cCCCccccCHHHHHHHH
Q 043998 74 S---RKWGFTKFSRADYLRWK 91 (101)
Q Consensus 74 s---~k~GFT~~~~~e~~~~~ 91 (101)
. .-++=|.++|++|..|.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~ 283 (840)
T 4gy7_A 263 KEDPNCPFNTFIHRKEYANKY 283 (840)
T ss_dssp CSCSSCTTCCEEEHHHHHHHH
T ss_pred ccCCCCCCCeeeCHHHHHHhh
Confidence 1 12344678999998875
No 133
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=23.58 E-value=43 Score=25.38 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=19.1
Q ss_pred eecCCCeEEEEeeCC--CChHHHHHHHhhcc
Q 043998 34 RFKALQTIFKLFHPD--SNSHHAQEALHRAK 62 (101)
Q Consensus 34 RV~~GQvI~svr~k~--~~~~~akEALrRAk 62 (101)
+|+.||+|+.+...+ ..+..|+..|..|.
T Consensus 64 ~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~ 94 (369)
T 1vf7_A 64 DVKAGQQLYQIDPATYEADYQSAQANLASTQ 94 (369)
T ss_dssp EECTTSEEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCEEEEECcHHHHHHHHHHHHHHHHHH
Confidence 899999999997653 22344444555543
No 134
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=23.45 E-value=58 Score=18.82 Aligned_cols=15 Identities=33% Similarity=0.160 Sum_probs=13.1
Q ss_pred eecCCCeEEEEeeCC
Q 043998 34 RFKALQTIFKLFHPD 48 (101)
Q Consensus 34 RV~~GQvI~svr~k~ 48 (101)
+|..||+|+.+...+
T Consensus 29 ~V~~G~~L~~l~~~~ 43 (77)
T 1dcz_A 29 TVKAGQTVLVLEAMK 43 (77)
T ss_dssp EECTTSEEEEEEETT
T ss_pred EEcCCCEEEEEEccc
Confidence 899999999998754
No 135
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=23.37 E-value=41 Score=21.80 Aligned_cols=41 Identities=5% Similarity=0.055 Sum_probs=25.8
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCC-ccEEEEecCC
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPV-RQKIIVSRKW 77 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPg-rqkI~is~k~ 77 (101)
++.+|++|++|--.+ ...+.+.++|+.++ ++ .-.+.|.+..
T Consensus 61 ~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~---~g~~v~l~v~R~~ 105 (129)
T 2kpk_A 61 KMETGDVIVSVNDTCVLGHTHAQVVKIFQSIP---IGASVDLELCRGY 105 (129)
T ss_dssp SCCTTCEEEEETTEECTTSCHHHHHHHHHHSC---TTEEEEEEEEECS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC---CCCeEEEEEEeCC
Confidence 588999999985432 23567778888763 12 2355555543
No 136
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=23.03 E-value=1.1e+02 Score=17.74 Aligned_cols=39 Identities=5% Similarity=0.138 Sum_probs=23.5
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
-+.+|++|++|--.+ -..+.+.+.|+.+ +..-.+.|.+.
T Consensus 40 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~ 81 (83)
T 2kv8_A 40 GLRAGDQILAVNEINVKKASHEDVVKLIGKC----SGVLHMVIAEG 81 (83)
T ss_dssp TCCTTCEEEEETTEECSSCCHHHHHHHHTTC----SSCEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCeEEEEEEcC
Confidence 379999999985432 2236666666543 23345666554
No 137
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=22.89 E-value=32 Score=28.15 Aligned_cols=17 Identities=18% Similarity=0.589 Sum_probs=14.7
Q ss_pred CCCccccCHHHHHHHHH
Q 043998 76 KWGFTKFSRADYLRWKS 92 (101)
Q Consensus 76 k~GFT~~~~~e~~~~~~ 92 (101)
.+||++|++.||..++.
T Consensus 120 ~eGF~~WnrrDF~~FI~ 136 (374)
T 2y9y_A 120 SEGFTNWNKLEFRKFIT 136 (374)
T ss_dssp HHCCCCSCHHHHHHHHH
T ss_pred HhhhcccCHHHHHHHHH
Confidence 57999999999988764
No 138
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=22.71 E-value=63 Score=25.08 Aligned_cols=26 Identities=19% Similarity=0.154 Sum_probs=17.4
Q ss_pred eecCCCeEEEEeeCCCChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHPDSNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k~~~~~~akEALrRA 61 (101)
+|+.||+|+++...+ +..|+..+..|
T Consensus 143 ~VkkGq~L~~ld~~~--l~~aq~~~~~a 168 (413)
T 3ne5_B 143 KVQKGTPLLDLTIPD--WVEAQSEYLLL 168 (413)
T ss_dssp EECTTCEEEEEECCS--SHHHHHHHHHH
T ss_pred EEcCCCEEEEEcCHH--HHHHHHHHHHH
Confidence 899999999998544 34444444333
No 139
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=22.63 E-value=62 Score=20.98 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=25.8
Q ss_pred eecCCCeEEEEeeCC---CChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD---SNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~---~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
.+.+|+.|++|--.+ -..+.|.+.|+.+.- ..-.+.|.+.
T Consensus 75 gL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~---~~v~l~v~r~ 117 (130)
T 1i16_A 75 TVQPGDEILQLGGTAMQGLTRFEAWNIIKALPD---GPVTIVIRRK 117 (130)
T ss_dssp CCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCS---SEEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC---ceEEEEEEeC
Confidence 689999999985443 224777888877632 1245566554
No 140
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=22.62 E-value=85 Score=21.67 Aligned_cols=40 Identities=8% Similarity=-0.015 Sum_probs=28.2
Q ss_pred cCcchHHHhhhcCCccccceeeecCCCeEEEEeeCC------CChHHHHHHHhhccc
Q 043998 13 QRPSVIQRQQSNQSSMGICQSRFKALQTIFKLFHPD------SNSHHAQEALHRAKF 63 (101)
Q Consensus 13 ~~~lq~GMR~AFGKP~G~aA~RV~~GQvI~svr~k~------~~~~~akEALrRAk~ 63 (101)
.-.|=+..+.+||+|. -+|.+-..+ .+.+.|++||..=.|
T Consensus 37 fs~VPe~Ll~~FG~p~-----------~vM~l~L~~~kkLA~ad~~kV~~~L~eqGf 82 (110)
T 2h7a_A 37 FSRVPEELMKGFGQPQ-----------LAMILPLDGRKKLVNADIEKVKQALTEQGY 82 (110)
T ss_dssp CCSSCHHHHHHHCSEE-----------EEEEECSSSCCCCSSSCHHHHHHHHHHTSE
T ss_pred cccCCHHHHHhcCCCc-----------EEEEEecCCCchhhhCCHHHHHHHHHhCCE
Confidence 3446689999999995 344444433 377899999987655
No 141
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=22.21 E-value=1.3e+02 Score=17.67 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=18.1
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRA 61 (101)
.+.+|++|++|--. ......+.++++.+
T Consensus 48 gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~ 78 (90)
T 1qav_A 48 ALFVGDAILSVNGEDLSSATHDEAVQALKKT 78 (90)
T ss_dssp CCCTTEEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 57889999988533 22345666666653
No 142
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=22.05 E-value=64 Score=21.98 Aligned_cols=33 Identities=6% Similarity=0.152 Sum_probs=25.1
Q ss_pred eEEEEeeCCCChHHHHHHHhhcccCCCCccEEEEec
Q 043998 40 TIFKLFHPDSNSHHAQEALHRAKFKFPVRQKIIVSR 75 (101)
Q Consensus 40 vI~svr~k~~~~~~akEALrRAk~KfPgrqkI~is~ 75 (101)
.++..-++++.++.++|||..+.+. + .++....
T Consensus 7 KlI~AIIrp~kld~V~~AL~~~G~~--~-t~v~~~g 39 (114)
T 3m05_A 7 KLVIAIVQDKDANYLSDQFIDQNVR--A-TKLSTTG 39 (114)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCC--E-EEEEEEE
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC--E-EEEEEec
Confidence 4666778899999999999999754 4 4555544
No 143
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=21.92 E-value=95 Score=18.57 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=25.9
Q ss_pred eecCCCeEEEEeeCC-CCh--HHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD-SNS--HHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~~~--~~akEALrRAk~KfPgrqkI~is~k 76 (101)
-+.+|++|++|--.+ .+. ..+.++|+.+. ..-.+.|.+.
T Consensus 47 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~R~ 88 (94)
T 1vb7_A 47 DLRPGDIIVAINGQSAENMLHAEAQSKIRQSA----SPLRLQLDRS 88 (94)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHTCC----SSEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CcEEEEEEEC
Confidence 478999999985443 232 67777777653 4556666664
No 144
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=21.64 E-value=33 Score=23.83 Aligned_cols=24 Identities=13% Similarity=0.193 Sum_probs=19.4
Q ss_pred EeeCCCChHHHHHHHhhcccCCCC
Q 043998 44 LFHPDSNSHHAQEALHRAKFKFPV 67 (101)
Q Consensus 44 vr~k~~~~~~akEALrRAk~KfPg 67 (101)
|.++.++.+.|.+||+.+.+-|-+
T Consensus 104 IlVp~~~~~~Ai~aL~~~~~~~~~ 127 (134)
T 1zhv_A 104 LLVRSNDLEKTADLLANAGHSLLL 127 (134)
T ss_dssp EEEEGGGHHHHHHHHHHTTCEEEC
T ss_pred EEEeHHHHHHHHHHHHHcCceeec
Confidence 457789999999999998876543
No 145
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.61 E-value=67 Score=20.51 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=25.7
Q ss_pred eecCCCeEEEEeeCC-CChHHHHHHHhhcccCCCC-ccEEEEecC
Q 043998 34 RFKALQTIFKLFHPD-SNSHHAQEALHRAKFKFPV-RQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~k~-~~~~~akEALrRAk~KfPg-rqkI~is~k 76 (101)
++.+|++|++|--.+ .+...+.++|+.. |+ .-.+.|.+.
T Consensus 66 ~l~~GD~I~~ing~~v~~~~~~~~~l~~~----~g~~v~l~v~R~ 106 (124)
T 1wh1_A 66 RIREGDRIIQINGIEVQNREEAVALLTSE----ENKNFSLLIARP 106 (124)
T ss_dssp CCCTTCEEEEESSCBCCSHHHHHHHHTCS----SCCSCCEEEEEC
T ss_pred CCCCCCEEEEECCEECCCHHHHHHHHHhC----CCCEEEEEEEEC
Confidence 489999999986553 4566777777652 33 345666553
No 146
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=21.25 E-value=36 Score=21.53 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=12.9
Q ss_pred eecCCCeEEEEeeC
Q 043998 34 RFKALQTIFKLFHP 47 (101)
Q Consensus 34 RV~~GQvI~svr~k 47 (101)
+|+.||+|+.+...
T Consensus 22 ~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 22 KVKKGQTLFIIEQD 35 (116)
T ss_dssp EECTTCEEEEEECT
T ss_pred EECCCCEEEEECHH
Confidence 89999999999876
No 147
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.24 E-value=1.3e+02 Score=18.86 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=18.9
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhc
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRA 61 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRA 61 (101)
++.+|++|++|--. ......+.++|+.+
T Consensus 65 ~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~ 95 (120)
T 2eno_A 65 RLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 95 (120)
T ss_dssp CSCTTCEEEEETTEECCSCCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 58899999998533 22345667777764
No 148
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=21.13 E-value=70 Score=18.16 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=13.1
Q ss_pred eecCCCeEEEEeeCC
Q 043998 34 RFKALQTIFKLFHPD 48 (101)
Q Consensus 34 RV~~GQvI~svr~k~ 48 (101)
+|+.||+|+.+...+
T Consensus 20 ~V~~G~~l~~i~~~~ 34 (72)
T 1z6h_A 20 QIEKGQEVAILESMK 34 (72)
T ss_dssp EECTTCEEEEEEETT
T ss_pred EECCCCEEEEEECCc
Confidence 889999999998754
No 149
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.01 E-value=40 Score=21.15 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=21.4
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcc
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAK 62 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk 62 (101)
|+.+|+.|++|--. ....+.|.+.|+.+.
T Consensus 50 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 81 (103)
T 1ufx_A 50 QLKVGHVILEVNGLTLRGKEHREAARIIAEAF 81 (103)
T ss_dssp SSCTTCBCCEETTEECTTCBHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHHhc
Confidence 69999999998533 233677888888863
No 150
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=20.62 E-value=34 Score=21.58 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=20.6
Q ss_pred eecCCCeEEEEeeC---CCChHHHHHHHhhcc
Q 043998 34 RFKALQTIFKLFHP---DSNSHHAQEALHRAK 62 (101)
Q Consensus 34 RV~~GQvI~svr~k---~~~~~~akEALrRAk 62 (101)
++.+|++|++|--. ......+.++|+.+.
T Consensus 60 ~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~ 91 (119)
T 1x6d_A 60 TIQKGNEVLSINGKSLKGTTHHDALAILRQAR 91 (119)
T ss_dssp SSCTTCBCCEETTEECSSCCHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 48999999998533 224567778887764
No 151
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=20.34 E-value=1.7e+02 Score=18.44 Aligned_cols=70 Identities=11% Similarity=-0.099 Sum_probs=39.7
Q ss_pred cchHHHhhhcCCccccceeeecCCCe-----------EEEEeeCC-----CChH---HHHHHHhhcccCCCCccEEEEe-
Q 043998 15 PSVIQRQQSNQSSMGICQSRFKALQT-----------IFKLFHPD-----SNSH---HAQEALHRAKFKFPVRQKIIVS- 74 (101)
Q Consensus 15 ~lq~GMR~AFGKP~G~aA~RV~~GQv-----------I~svr~k~-----~~~~---~akEALrRAk~KfPgrqkI~is- 74 (101)
-+++-|-.+||||.....-.++.++. +++|.+-. ++.+ ..-++|...--.-|.+..|.+.
T Consensus 22 ~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 22 RLTDLLAESMNKPRNRIAIEVLAGQRITHGASRNPVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHCcChHHEEEEEECCccEEEcCCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 46677888999999866645565543 35555443 2222 2223444443444556666655
Q ss_pred ---cCCCccccCH
Q 043998 75 ---RKWGFTKFSR 84 (101)
Q Consensus 75 ---~k~GFT~~~~ 84 (101)
..|||..-+.
T Consensus 102 ~~~~~wg~~G~~~ 114 (119)
T 2os5_A 102 LQPIHVGFNGTTV 114 (119)
T ss_dssp CCGGGCEETTEEH
T ss_pred CCHHHeeECCEEh
Confidence 3788765443
No 152
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=20.20 E-value=1.6e+02 Score=20.13 Aligned_cols=42 Identities=12% Similarity=0.028 Sum_probs=28.1
Q ss_pred HHHHHHHhhcccC--C-CCccEEEEecCCCccccCHHHHHHHHHc
Q 043998 52 HHAQEALHRAKFK--F-PVRQKIIVSRKWGFTKFSRADYLRWKSE 93 (101)
Q Consensus 52 ~~akEALrRAk~K--f-PgrqkI~is~k~GFT~~~~~e~~~~~~e 93 (101)
+.|.+||.-|..- . ...-.|.+-.+.||+.++.+|..++.++
T Consensus 155 ~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~ 199 (202)
T 1j2q_H 155 ELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAK 199 (202)
T ss_dssp HHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHH
Confidence 4566677666332 2 3445665556669999999999888764
No 153
>3qga_A UREA2, fusion of urease beta and gamma subunits; iron metalloenzyme, alpha-beta barrel, hydrolase; HET: FME KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A*
Probab=20.03 E-value=38 Score=26.14 Aligned_cols=21 Identities=19% Similarity=0.058 Sum_probs=16.1
Q ss_pred HHhhhcCCccccceeeecCCCeEE
Q 043998 19 QRQQSNQSSMGICQSRFKALQTIF 42 (101)
Q Consensus 19 GMR~AFGKP~G~aA~RV~~GQvI~ 42 (101)
|||+. -|.|||. |..|||.--
T Consensus 163 G~RLd--IpAGTav-RFEPG~~k~ 183 (225)
T 3qga_A 163 GKRLD--IPSGNTL-RIGAGETKT 183 (225)
T ss_dssp TEEEC--SCTTCEE-EECTTCEEE
T ss_pred Ccccc--cCCCCeE-eeCCCCeeE
Confidence 55543 4999999 999999643
No 154
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.02 E-value=1.6e+02 Score=17.94 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=24.3
Q ss_pred eecCCCeEEEEee---CCCChHHHHHHHhhcccCCCCccEEEEecC
Q 043998 34 RFKALQTIFKLFH---PDSNSHHAQEALHRAKFKFPVRQKIIVSRK 76 (101)
Q Consensus 34 RV~~GQvI~svr~---k~~~~~~akEALrRAk~KfPgrqkI~is~k 76 (101)
.+.+|++|++|-- .......+.++|+.+. ..-.+.|.+.
T Consensus 59 gL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~----~~v~l~v~R~ 100 (107)
T 1uhp_A 59 GLQIHDRIIEVNGRDLSRATHDQAVEAFKTAK----EPIVVQVLRR 100 (107)
T ss_dssp CCCSSCEEEEETTEECTTCCHHHHHHHHHHCC----SSEEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CcEEEEEEeC
Confidence 5789999999753 2333566777777643 3445555443
Done!