RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043998
         (101 letters)



>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 137

 Score = 65.6 bits (160), Expect = 8e-16
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 9/72 (12%)

Query: 20  RQQSNQSSMGICQS---------RFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQK 70
              +++   G+  +         R    Q I  +     N  H  EAL RAKFKFP RQK
Sbjct: 66  CAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQK 125

Query: 71  IIVSRKWGFTKF 82
           I +S+KWGFTKF
Sbjct: 126 IHISKKWGFTKF 137


>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
           marismortui [TaxId: 2238]}
          Length = 167

 Score = 39.4 bits (92), Expect = 1e-05
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 50  NSHHAQEALHRAKFKFPVRQKIIVS 74
              + +EA  RAK K      I  S
Sbjct: 138 PDPNVEEAWRRAKMKVTPTINIDSS 162


>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 163

 Score = 39.1 bits (91), Expect = 2e-05
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 33  SRFKALQTIFKLFHPDSNSHHAQEALHRAKFKFPVRQKI 71
           +R +A + +F  +    ++ H +EA  RA  K     +I
Sbjct: 125 ARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRI 163


>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
           [TaxId: 562]}
          Length = 131

 Score = 25.1 bits (55), Expect = 1.5
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 54  AQEALHRAKFKFPVRQKIIV 73
           A+EA   A  K P++   + 
Sbjct: 111 AREAFKLAAAKLPIKTTFVT 130


>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 346

 Score = 25.0 bits (54), Expect = 2.2
 Identities = 4/18 (22%), Positives = 6/18 (33%)

Query: 75 RKWGFTKFSRADYLRWKS 92
          R++GF         R   
Sbjct: 35 REFGFDHSGEGPSDRKNQ 52


>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
           thermophilus [TaxId: 274]}
          Length = 136

 Score = 24.4 bits (53), Expect = 2.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 54  AQEALHRAKFKFPVRQKIIV 73
           A EAL  A  K P++ KI+ 
Sbjct: 109 AMEALRIAGHKLPIKTKIVR 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.129    0.401 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 362,891
Number of extensions: 13683
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 9
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)