Query 043999
Match_columns 574
No_of_seqs 771 out of 4074
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 10:27:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.7E-73 5.8E-78 602.6 67.4 504 25-561 386-916 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8E-73 1.7E-77 599.0 67.0 502 41-572 367-894 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.1E-73 4.5E-78 615.8 61.3 538 15-574 56-639 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 5.6E-71 1.2E-75 596.8 60.3 532 12-571 123-668 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.8E-66 3.9E-71 548.7 55.6 475 42-558 85-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 3.4E-65 7.3E-70 539.0 49.8 454 104-574 85-542 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-32 8.6E-37 300.8 67.9 533 20-574 340-885 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-32 1.8E-36 298.3 65.6 514 21-552 375-898 (899)
9 PRK11447 cellulose synthase su 100.0 4.9E-23 1.1E-27 229.0 68.3 508 21-554 40-700 (1157)
10 PRK11447 cellulose synthase su 100.0 3.3E-23 7.1E-28 230.4 63.8 398 150-558 278-745 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 3.9E-23 8.4E-28 195.3 36.4 435 109-560 51-489 (966)
12 PRK09782 bacteriophage N4 rece 99.9 1.9E-19 4.2E-24 191.5 60.7 509 21-560 56-710 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.6E-21 3.6E-26 184.4 39.0 405 114-535 90-500 (966)
14 PRK11788 tetratricopeptide rep 99.9 7.1E-22 1.5E-26 196.3 36.5 303 219-559 44-352 (389)
15 TIGR00990 3a0801s09 mitochondr 99.9 7.4E-20 1.6E-24 191.4 52.9 432 107-554 128-571 (615)
16 KOG2002 TPR-containing nuclear 99.9 5.4E-20 1.2E-24 183.2 47.9 529 19-567 174-758 (1018)
17 PRK11788 tetratricopeptide rep 99.9 9.7E-22 2.1E-26 195.3 35.5 298 113-417 42-350 (389)
18 TIGR00990 3a0801s09 mitochondr 99.9 4.1E-19 8.8E-24 185.8 52.3 416 143-574 129-556 (615)
19 PRK09782 bacteriophage N4 rece 99.9 3.7E-18 8.1E-23 181.8 57.9 211 352-573 479-690 (987)
20 PRK15174 Vi polysaccharide exp 99.9 5.3E-19 1.1E-23 184.2 48.7 360 116-484 15-381 (656)
21 PRK15174 Vi polysaccharide exp 99.9 3.1E-19 6.8E-24 185.9 46.9 354 109-484 45-403 (656)
22 PRK10049 pgaA outer membrane p 99.9 9.7E-19 2.1E-23 186.2 48.6 420 105-561 14-461 (765)
23 KOG2002 TPR-containing nuclear 99.9 5.6E-18 1.2E-22 169.1 48.9 442 106-555 307-799 (1018)
24 PRK10049 pgaA outer membrane p 99.9 1.2E-18 2.7E-23 185.4 47.9 383 103-518 46-455 (765)
25 PRK14574 hmsH outer membrane p 99.9 1.5E-16 3.3E-21 166.2 57.0 444 107-563 36-520 (822)
26 PRK14574 hmsH outer membrane p 99.9 4.8E-16 1E-20 162.5 55.8 435 60-528 47-520 (822)
27 KOG4422 Uncharacterized conser 99.8 1.2E-14 2.5E-19 132.7 42.9 430 104-555 114-591 (625)
28 KOG2003 TPR repeat-containing 99.8 9.8E-17 2.1E-21 147.0 29.6 457 108-574 203-708 (840)
29 KOG0495 HAT repeat protein [RN 99.8 2.2E-12 4.8E-17 124.1 53.2 435 120-572 420-863 (913)
30 KOG4422 Uncharacterized conser 99.8 1.5E-13 3.3E-18 125.5 43.1 360 139-521 205-592 (625)
31 KOG2003 TPR repeat-containing 99.8 4.9E-15 1.1E-19 136.0 31.4 421 111-540 242-709 (840)
32 KOG2076 RNA polymerase III tra 99.8 1.3E-12 2.7E-17 130.6 50.7 467 60-554 152-695 (895)
33 KOG1915 Cell cycle control pro 99.8 1.5E-12 3.2E-17 120.7 46.8 438 103-553 104-584 (677)
34 KOG2076 RNA polymerase III tra 99.8 1.2E-12 2.6E-17 130.8 49.6 361 20-411 150-552 (895)
35 KOG1915 Cell cycle control pro 99.7 5.7E-12 1.2E-16 116.8 46.3 449 105-566 72-546 (677)
36 KOG0495 HAT repeat protein [RN 99.7 3.1E-11 6.7E-16 116.4 51.4 437 103-554 437-880 (913)
37 KOG1155 Anaphase-promoting com 99.7 3.7E-12 8E-17 117.9 40.0 163 352-518 332-494 (559)
38 PRK10747 putative protoheme IX 99.7 6.5E-13 1.4E-17 130.8 36.4 291 223-553 97-389 (398)
39 KOG1155 Anaphase-promoting com 99.7 3.1E-11 6.8E-16 111.9 42.8 356 171-554 160-553 (559)
40 TIGR00540 hemY_coli hemY prote 99.7 8.3E-13 1.8E-17 130.8 35.3 120 187-309 96-216 (409)
41 PRK10747 putative protoheme IX 99.7 1E-12 2.2E-17 129.5 34.8 79 364-445 308-386 (398)
42 TIGR00540 hemY_coli hemY prote 99.7 8.1E-13 1.7E-17 130.9 34.2 120 154-274 97-216 (409)
43 KOG1173 Anaphase-promoting com 99.6 1.4E-11 3E-16 117.0 39.6 453 106-570 16-532 (611)
44 PF13429 TPR_15: Tetratricopep 99.6 1.4E-15 3.1E-20 143.0 12.6 262 285-553 13-276 (280)
45 KOG0547 Translocase of outer m 99.6 1.2E-11 2.6E-16 115.3 37.0 398 107-518 116-565 (606)
46 PF13429 TPR_15: Tetratricopep 99.6 3.8E-15 8.2E-20 140.1 12.4 259 111-376 13-274 (280)
47 KOG1126 DNA-binding cell divis 99.6 4.2E-13 9.2E-18 129.8 26.2 288 259-561 333-625 (638)
48 COG2956 Predicted N-acetylgluc 99.6 3.8E-12 8.3E-17 112.5 29.1 298 109-414 39-347 (389)
49 COG2956 Predicted N-acetylgluc 99.6 1.1E-11 2.3E-16 109.8 30.6 220 154-378 48-277 (389)
50 KOG1126 DNA-binding cell divis 99.6 7.9E-13 1.7E-17 128.0 25.8 282 156-450 334-621 (638)
51 KOG4318 Bicoid mRNA stability 99.6 1.2E-10 2.7E-15 116.1 39.2 252 31-295 12-286 (1088)
52 KOG0547 Translocase of outer m 99.6 7E-11 1.5E-15 110.3 35.2 398 143-553 117-565 (606)
53 COG3071 HemY Uncharacterized e 99.6 7.4E-11 1.6E-15 107.8 34.1 292 223-552 97-388 (400)
54 KOG2047 mRNA splicing factor [ 99.6 1.4E-08 3.1E-13 98.3 50.2 401 106-519 138-615 (835)
55 COG3071 HemY Uncharacterized e 99.6 9.4E-11 2E-15 107.1 33.6 294 187-518 96-389 (400)
56 KOG2047 mRNA splicing factor [ 99.5 1.3E-08 2.8E-13 98.6 47.9 452 106-568 102-630 (835)
57 KOG1156 N-terminal acetyltrans 99.5 2.2E-09 4.8E-14 104.0 42.2 440 102-556 4-470 (700)
58 KOG3785 Uncharacterized conser 99.5 2.8E-10 6.2E-15 102.0 32.4 422 116-563 32-497 (557)
59 KOG2376 Signal recognition par 99.5 2.3E-09 5E-14 102.7 38.4 221 111-350 17-258 (652)
60 KOG4162 Predicted calmodulin-b 99.5 6.9E-09 1.5E-13 102.7 42.4 430 104-554 321-783 (799)
61 KOG1173 Anaphase-promoting com 99.5 8.6E-10 1.9E-14 105.1 34.7 285 207-499 241-531 (611)
62 PRK12370 invasion protein regu 99.5 1.1E-10 2.3E-15 120.3 30.9 268 139-415 254-536 (553)
63 TIGR02521 type_IV_pilW type IV 99.5 7.3E-11 1.6E-15 108.1 26.0 200 105-307 30-230 (234)
64 KOG1156 N-terminal acetyltrans 99.4 1.4E-08 3.1E-13 98.5 40.4 422 118-551 53-508 (700)
65 PRK12370 invasion protein regu 99.4 2.1E-10 4.6E-15 118.1 30.3 267 172-450 253-536 (553)
66 KOG4162 Predicted calmodulin-b 99.4 2E-08 4.3E-13 99.5 41.8 445 107-573 284-767 (799)
67 KOG4318 Bicoid mRNA stability 99.4 1.1E-09 2.4E-14 109.5 32.9 426 103-553 22-556 (1088)
68 KOG1129 TPR repeat-containing 99.4 2.7E-11 5.8E-16 107.3 18.5 232 108-344 225-458 (478)
69 TIGR02521 type_IV_pilW type IV 99.4 3.1E-10 6.7E-15 104.0 26.0 198 141-341 31-229 (234)
70 KOG3785 Uncharacterized conser 99.4 6.7E-08 1.5E-12 87.1 38.0 393 110-528 61-497 (557)
71 KOG1129 TPR repeat-containing 99.3 2.4E-10 5.2E-15 101.3 19.7 228 319-553 227-457 (478)
72 PF13041 PPR_2: PPR repeat fam 99.3 5.2E-12 1.1E-16 83.2 6.7 49 523-571 1-49 (50)
73 PF13041 PPR_2: PPR repeat fam 99.3 4.9E-12 1.1E-16 83.4 6.3 50 173-222 1-50 (50)
74 PF12569 NARP1: NMDA receptor- 99.3 1.4E-08 3E-13 101.2 32.9 293 148-448 11-333 (517)
75 PF12569 NARP1: NMDA receptor- 99.3 2E-08 4.4E-13 100.0 33.4 89 218-309 12-106 (517)
76 KOG1174 Anaphase-promoting com 99.3 9.3E-07 2E-11 81.6 42.9 288 258-554 209-500 (564)
77 KOG1174 Anaphase-promoting com 99.3 5E-07 1.1E-11 83.3 38.4 403 103-525 94-504 (564)
78 KOG1840 Kinesin light chain [C 99.3 4.7E-09 1E-13 103.2 27.2 249 320-568 204-499 (508)
79 KOG1127 TPR repeat-containing 99.2 1.8E-07 3.9E-12 95.2 36.7 449 102-571 522-1014(1238)
80 KOG0624 dsRNA-activated protei 99.2 3.2E-07 6.9E-12 82.5 34.0 310 146-483 43-369 (504)
81 KOG0985 Vesicle coat protein c 99.2 1.8E-06 3.8E-11 88.2 43.1 138 386-547 1105-1242(1666)
82 KOG1840 Kinesin light chain [C 99.2 3.6E-09 7.8E-14 104.0 23.9 242 107-377 200-477 (508)
83 PRK11189 lipoprotein NlpI; Pro 99.2 1.7E-08 3.7E-13 95.2 27.8 218 120-345 40-266 (296)
84 cd05804 StaR_like StaR_like; a 99.2 1.2E-07 2.5E-12 93.1 34.2 201 105-309 5-215 (355)
85 KOG2376 Signal recognition par 99.2 2.7E-06 5.9E-11 82.3 40.7 445 58-551 23-517 (652)
86 KOG0548 Molecular co-chaperone 99.2 1.6E-07 3.5E-12 89.6 32.3 98 84-185 17-114 (539)
87 PRK11189 lipoprotein NlpI; Pro 99.2 2.9E-08 6.3E-13 93.6 27.3 217 155-380 40-266 (296)
88 COG3063 PilF Tfp pilus assembl 99.2 2.6E-08 5.6E-13 84.7 22.7 196 107-305 36-232 (250)
89 cd05804 StaR_like StaR_like; a 99.2 4.2E-07 9E-12 89.2 35.4 199 174-377 5-213 (355)
90 KOG0985 Vesicle coat protein c 99.1 1.2E-05 2.7E-10 82.4 44.2 413 7-482 835-1306(1666)
91 COG3063 PilF Tfp pilus assembl 99.1 7.1E-08 1.5E-12 82.1 23.9 205 144-353 38-243 (250)
92 KOG4340 Uncharacterized conser 99.1 5.1E-07 1.1E-11 79.6 29.7 292 109-410 13-335 (459)
93 KOG1914 mRNA cleavage and poly 99.1 9E-06 2E-10 77.9 42.0 412 103-519 17-501 (656)
94 KOG0548 Molecular co-chaperone 99.1 4.5E-07 9.7E-12 86.7 31.5 410 113-554 9-455 (539)
95 KOG3616 Selective LIM binding 99.1 1.6E-06 3.5E-11 85.6 34.6 312 145-513 593-905 (1636)
96 PRK04841 transcriptional regul 99.1 2.6E-06 5.6E-11 94.7 39.3 337 219-555 383-761 (903)
97 KOG4340 Uncharacterized conser 99.0 3.8E-07 8.2E-12 80.4 24.8 328 178-518 13-374 (459)
98 PRK04841 transcriptional regul 99.0 4.6E-06 9.9E-11 92.7 39.7 369 150-519 350-760 (903)
99 KOG3617 WD40 and TPR repeat-co 99.0 8.1E-06 1.8E-10 81.9 35.3 211 104-341 755-993 (1416)
100 PF04733 Coatomer_E: Coatomer 99.0 7.9E-08 1.7E-12 89.3 18.7 247 256-518 12-264 (290)
101 KOG0624 dsRNA-activated protei 98.9 2.1E-05 4.5E-10 71.2 32.2 369 104-525 36-426 (504)
102 PF04733 Coatomer_E: Coatomer 98.9 7.3E-08 1.6E-12 89.5 17.9 250 115-379 10-265 (290)
103 KOG1127 TPR repeat-containing 98.9 4.4E-06 9.6E-11 85.5 30.6 417 122-548 474-946 (1238)
104 KOG3617 WD40 and TPR repeat-co 98.9 1.3E-05 2.9E-10 80.4 32.8 386 105-551 725-1171(1416)
105 PLN02789 farnesyltranstransfer 98.9 2.1E-06 4.5E-11 81.0 26.5 219 108-362 39-267 (320)
106 KOG1914 mRNA cleavage and poly 98.9 0.00011 2.4E-09 70.7 41.7 411 138-553 17-500 (656)
107 PLN02789 farnesyltranstransfer 98.9 3.1E-06 6.7E-11 79.8 26.0 185 103-291 68-266 (320)
108 KOG1125 TPR repeat-containing 98.8 8.7E-07 1.9E-11 85.5 21.5 218 186-410 296-523 (579)
109 KOG1070 rRNA processing protei 98.8 3.5E-06 7.5E-11 89.2 26.8 239 127-372 1445-1693(1710)
110 KOG3616 Selective LIM binding 98.8 2.5E-05 5.4E-10 77.5 30.9 190 219-442 741-930 (1636)
111 KOG2053 Mitochondrial inherita 98.8 0.00028 6E-09 72.2 44.2 226 19-275 19-256 (932)
112 KOG1125 TPR repeat-containing 98.8 9.3E-07 2E-11 85.3 20.2 253 149-407 293-564 (579)
113 PF12854 PPR_1: PPR repeat 98.8 1.3E-08 2.8E-13 60.0 4.0 32 205-236 2-33 (34)
114 KOG1070 rRNA processing protei 98.7 1.1E-05 2.5E-10 85.4 27.8 228 314-547 1457-1693(1710)
115 TIGR03302 OM_YfiO outer membra 98.7 1.6E-06 3.4E-11 79.4 19.5 186 103-309 30-232 (235)
116 PF12854 PPR_1: PPR repeat 98.7 1.9E-08 4.1E-13 59.3 4.0 32 275-306 2-33 (34)
117 KOG1128 Uncharacterized conser 98.7 1.6E-06 3.4E-11 85.9 19.0 215 317-553 400-615 (777)
118 TIGR03302 OM_YfiO outer membra 98.7 4.6E-06 9.9E-11 76.4 20.5 186 140-344 32-232 (235)
119 PRK10370 formate-dependent nit 98.7 5.3E-06 1.1E-10 72.8 19.5 156 112-282 22-180 (198)
120 KOG1128 Uncharacterized conser 98.6 3E-06 6.6E-11 84.0 19.2 238 207-465 395-633 (777)
121 PRK10370 formate-dependent nit 98.6 8.4E-06 1.8E-10 71.6 20.1 119 398-519 52-173 (198)
122 PRK14720 transcript cleavage f 98.6 2.1E-05 4.5E-10 82.8 25.4 221 102-361 27-268 (906)
123 COG5010 TadD Flp pilus assembl 98.6 1.4E-05 3E-10 70.0 20.1 159 145-306 70-228 (257)
124 COG5010 TadD Flp pilus assembl 98.6 1.6E-05 3.5E-10 69.6 20.2 159 389-551 70-228 (257)
125 PRK15179 Vi polysaccharide bio 98.6 3.4E-05 7.4E-10 80.4 25.2 147 137-286 82-228 (694)
126 COG4783 Putative Zn-dependent 98.6 0.00011 2.5E-09 70.0 26.2 198 157-379 253-454 (484)
127 PRK14720 transcript cleavage f 98.6 7.9E-05 1.7E-09 78.5 27.6 240 171-466 27-268 (906)
128 KOG3081 Vesicle coat complex C 98.5 0.00026 5.7E-09 62.1 24.9 250 114-379 16-271 (299)
129 PRK15179 Vi polysaccharide bio 98.5 2.2E-05 4.7E-10 81.8 21.7 162 103-274 83-245 (694)
130 PRK15359 type III secretion sy 98.5 1.6E-05 3.6E-10 65.9 17.1 91 426-518 30-120 (144)
131 KOG3081 Vesicle coat complex C 98.5 3.8E-05 8.3E-10 67.2 19.2 219 111-344 46-271 (299)
132 PRK15359 type III secretion sy 98.5 1.2E-05 2.6E-10 66.7 15.9 116 441-564 14-129 (144)
133 COG4783 Putative Zn-dependent 98.4 0.00048 1E-08 65.9 27.0 111 153-266 318-429 (484)
134 TIGR02552 LcrH_SycD type III s 98.4 1.3E-05 2.8E-10 66.1 14.8 105 456-564 18-122 (135)
135 KOG3060 Uncharacterized conser 98.4 0.00047 1E-08 60.1 23.1 187 328-518 25-219 (289)
136 TIGR02552 LcrH_SycD type III s 98.3 4.1E-05 8.8E-10 63.1 14.7 91 147-238 23-113 (135)
137 KOG3060 Uncharacterized conser 98.3 0.00075 1.6E-08 58.9 22.2 188 119-309 25-220 (289)
138 TIGR00756 PPR pentatricopeptid 98.2 2.4E-06 5.3E-11 51.2 4.4 35 107-141 1-35 (35)
139 KOG2053 Mitochondrial inherita 98.2 0.012 2.6E-07 60.7 45.3 222 118-345 21-256 (932)
140 PF09976 TPR_21: Tetratricopep 98.2 0.00015 3.2E-09 60.5 15.7 116 433-551 24-144 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9.5E-05 2.1E-09 71.3 14.9 127 106-238 169-296 (395)
142 PF09976 TPR_21: Tetratricopep 98.1 0.00014 3E-09 60.6 13.9 25 109-134 15-39 (145)
143 PF13812 PPR_3: Pentatricopept 98.1 7E-06 1.5E-10 48.8 4.3 33 107-139 2-34 (34)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.0003 6.4E-09 67.9 17.6 122 355-482 174-295 (395)
145 TIGR00756 PPR pentatricopeptid 98.1 7.1E-06 1.5E-10 49.1 4.3 33 527-559 2-34 (35)
146 cd00189 TPR Tetratricopeptide 98.0 0.00012 2.5E-09 55.7 10.8 94 109-203 3-96 (100)
147 PF13812 PPR_3: Pentatricopept 98.0 1.6E-05 3.5E-10 47.1 4.5 32 527-558 3-34 (34)
148 KOG2041 WD40 repeat protein [G 97.9 0.029 6.3E-07 56.3 28.4 106 212-340 798-903 (1189)
149 PF01535 PPR: PPR repeat; Int 97.9 1.3E-05 2.7E-10 46.4 3.4 31 107-137 1-31 (31)
150 PF10037 MRP-S27: Mitochondria 97.9 0.00022 4.8E-09 69.1 13.3 124 380-503 61-186 (429)
151 PRK02603 photosystem I assembl 97.9 0.00094 2E-08 57.5 15.3 96 104-199 33-130 (172)
152 cd00189 TPR Tetratricopeptide 97.9 0.00036 7.8E-09 52.9 11.7 94 458-553 3-96 (100)
153 PF10037 MRP-S27: Mitochondria 97.8 0.00038 8.3E-09 67.5 13.8 125 344-468 60-186 (429)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00062 1.3E-08 54.4 12.9 98 457-554 4-105 (119)
155 PF12895 Apc3: Anaphase-promot 97.8 4.7E-05 1E-09 56.5 5.7 81 119-200 2-83 (84)
156 PF05843 Suf: Suppressor of fo 97.8 0.00049 1.1E-08 64.2 12.9 130 107-238 2-135 (280)
157 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0014 3E-08 52.4 14.1 98 422-519 4-105 (119)
158 PF05843 Suf: Suppressor of fo 97.8 0.00082 1.8E-08 62.7 14.3 129 387-518 3-135 (280)
159 CHL00033 ycf3 photosystem I as 97.7 0.00065 1.4E-08 58.3 12.6 81 106-186 35-117 (168)
160 PRK02603 photosystem I assembl 97.7 0.0015 3.3E-08 56.2 14.6 87 421-508 36-124 (172)
161 PLN03088 SGT1, suppressor of 97.7 0.001 2.3E-08 64.4 15.0 103 426-532 8-110 (356)
162 PF12895 Apc3: Anaphase-promot 97.7 6.6E-05 1.4E-09 55.7 5.3 80 468-550 2-83 (84)
163 PF08579 RPM2: Mitochondrial r 97.7 0.00085 1.8E-08 50.8 10.9 76 496-571 31-115 (120)
164 KOG0553 TPR repeat-containing 97.7 0.00049 1.1E-08 61.8 11.4 103 429-535 90-192 (304)
165 PF01535 PPR: PPR repeat; Int 97.7 3.7E-05 8E-10 44.4 3.1 29 177-205 2-30 (31)
166 COG4700 Uncharacterized protei 97.7 0.013 2.7E-07 48.9 18.3 101 418-518 87-188 (251)
167 PLN03088 SGT1, suppressor of 97.7 0.0014 3.1E-08 63.5 15.4 93 391-485 8-100 (356)
168 KOG0553 TPR repeat-containing 97.7 0.00064 1.4E-08 61.0 11.6 102 392-497 88-189 (304)
169 PRK10866 outer membrane biogen 97.7 0.013 2.8E-07 53.3 20.5 66 175-242 32-101 (243)
170 PF12688 TPR_5: Tetratrico pep 97.7 0.0025 5.5E-08 50.3 13.8 105 461-571 7-117 (120)
171 PF14938 SNAP: Soluble NSF att 97.7 0.016 3.5E-07 54.3 21.9 20 183-202 43-62 (282)
172 PF12688 TPR_5: Tetratrico pep 97.7 0.0025 5.4E-08 50.3 13.7 108 110-221 5-117 (120)
173 KOG0550 Molecular chaperone (D 97.7 0.008 1.7E-07 56.5 18.8 276 250-554 54-350 (486)
174 PRK15363 pathogenicity island 97.7 0.0018 3.9E-08 53.0 13.2 87 430-518 45-131 (157)
175 PRK15363 pathogenicity island 97.7 0.0039 8.4E-08 51.1 14.9 90 391-482 41-130 (157)
176 PF08579 RPM2: Mitochondrial r 97.6 0.00077 1.7E-08 51.0 9.7 75 287-361 32-115 (120)
177 PRK10153 DNA-binding transcrip 97.6 0.0041 8.9E-08 63.1 18.2 143 380-528 332-489 (517)
178 KOG0550 Molecular chaperone (D 97.6 0.018 4E-07 54.1 20.1 153 324-484 178-350 (486)
179 PF07079 DUF1347: Protein of u 97.6 0.075 1.6E-06 50.9 42.6 203 351-565 299-530 (549)
180 PRK10866 outer membrane biogen 97.6 0.02 4.3E-07 52.1 19.8 56 286-341 181-238 (243)
181 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.089 1.9E-06 50.3 39.1 443 102-566 38-541 (660)
182 PF14559 TPR_19: Tetratricopep 97.5 0.00035 7.6E-09 49.3 6.5 62 502-566 3-64 (68)
183 PRK10153 DNA-binding transcrip 97.5 0.0054 1.2E-07 62.3 17.1 63 245-309 420-482 (517)
184 CHL00033 ycf3 photosystem I as 97.5 0.0029 6.2E-08 54.3 12.9 94 456-550 36-138 (168)
185 KOG1130 Predicted G-alpha GTPa 97.4 0.0016 3.5E-08 60.8 11.2 285 218-518 25-343 (639)
186 PF06239 ECSIT: Evolutionarily 97.4 0.0042 9E-08 53.5 12.4 36 470-505 118-153 (228)
187 KOG1130 Predicted G-alpha GTPa 97.4 0.003 6.5E-08 59.1 12.3 133 421-553 196-343 (639)
188 PF14938 SNAP: Soluble NSF att 97.4 0.0083 1.8E-07 56.3 15.8 27 107-133 36-62 (282)
189 KOG2041 WD40 repeat protein [G 97.4 0.19 4.1E-06 50.8 30.2 155 189-375 748-903 (1189)
190 PF14559 TPR_19: Tetratricopep 97.4 0.00045 9.7E-09 48.8 5.5 49 119-168 4-52 (68)
191 PF13432 TPR_16: Tetratricopep 97.4 0.0011 2.3E-08 46.3 7.3 57 497-554 4-60 (65)
192 PF06239 ECSIT: Evolutionarily 97.3 0.0049 1.1E-07 53.0 12.0 103 314-435 46-153 (228)
193 COG4235 Cytochrome c biogenesi 97.3 0.013 2.8E-07 53.3 14.8 119 165-287 146-267 (287)
194 PF13432 TPR_16: Tetratricopep 97.3 0.0011 2.3E-08 46.3 6.6 52 151-202 7-58 (65)
195 COG4235 Cytochrome c biogenesi 97.3 0.019 4E-07 52.2 15.8 100 452-553 153-255 (287)
196 PF04840 Vps16_C: Vps16, C-ter 97.3 0.18 3.9E-06 47.8 25.9 79 427-515 184-262 (319)
197 PF07079 DUF1347: Protein of u 97.3 0.2 4.3E-06 48.2 42.6 243 276-531 256-531 (549)
198 PF13525 YfiO: Outer membrane 97.2 0.088 1.9E-06 46.6 19.7 62 179-240 9-72 (203)
199 PF13414 TPR_11: TPR repeat; P 97.2 0.0015 3.3E-08 46.2 6.9 63 490-553 3-66 (69)
200 PF04840 Vps16_C: Vps16, C-ter 97.2 0.2 4.3E-06 47.5 27.0 111 281-411 178-288 (319)
201 PF13414 TPR_11: TPR repeat; P 97.2 0.0019 4.2E-08 45.6 7.2 64 454-518 2-66 (69)
202 KOG1258 mRNA processing protei 97.2 0.3 6.4E-06 48.9 37.1 411 105-539 44-489 (577)
203 COG4700 Uncharacterized protei 97.1 0.12 2.7E-06 43.2 18.9 64 140-203 88-152 (251)
204 PRK10803 tol-pal system protei 97.1 0.024 5.1E-07 52.1 14.7 96 458-554 146-246 (263)
205 COG3898 Uncharacterized membra 97.1 0.28 6.2E-06 46.2 32.4 291 108-414 84-392 (531)
206 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.37 8.1E-06 46.3 36.5 408 106-535 76-545 (660)
207 PF13525 YfiO: Outer membrane 97.0 0.21 4.5E-06 44.2 19.5 60 215-274 10-71 (203)
208 KOG2796 Uncharacterized conser 97.0 0.25 5.4E-06 43.9 23.5 28 107-134 70-97 (366)
209 PRK10803 tol-pal system protei 96.9 0.016 3.5E-07 53.2 12.0 25 178-202 183-207 (263)
210 KOG2796 Uncharacterized conser 96.8 0.31 6.8E-06 43.3 23.1 143 388-533 180-327 (366)
211 PF13281 DUF4071: Domain of un 96.8 0.28 6.1E-06 47.0 19.7 95 180-274 146-255 (374)
212 PF03704 BTAD: Bacterial trans 96.8 0.043 9.2E-07 45.7 13.1 72 492-564 64-140 (146)
213 PF13371 TPR_9: Tetratricopept 96.8 0.01 2.2E-07 42.4 8.1 55 499-554 4-58 (73)
214 KOG1538 Uncharacterized conser 96.8 0.35 7.5E-06 48.6 20.4 54 386-448 748-801 (1081)
215 KOG1538 Uncharacterized conser 96.8 0.2 4.4E-06 50.2 18.8 55 179-236 602-658 (1081)
216 PF03704 BTAD: Bacterial trans 96.8 0.039 8.5E-07 45.9 12.7 125 107-248 4-139 (146)
217 PF13371 TPR_9: Tetratricopept 96.7 0.013 2.8E-07 41.9 7.7 56 463-519 3-58 (73)
218 KOG2114 Vacuolar assembly/sort 96.6 1.2 2.5E-05 46.6 27.0 179 109-307 337-517 (933)
219 PF13424 TPR_12: Tetratricopep 96.6 0.0072 1.6E-07 43.9 6.0 61 492-552 7-73 (78)
220 PF13424 TPR_12: Tetratricopep 96.5 0.0087 1.9E-07 43.5 6.1 63 456-518 6-74 (78)
221 COG3898 Uncharacterized membra 96.5 0.77 1.7E-05 43.4 34.6 251 116-383 130-396 (531)
222 PRK15331 chaperone protein Sic 96.5 0.11 2.5E-06 42.9 12.7 87 430-518 47-133 (165)
223 KOG2280 Vacuolar assembly/sort 96.4 1.4 2.9E-05 45.5 30.5 102 134-236 425-533 (829)
224 PRK15331 chaperone protein Sic 96.4 0.41 8.8E-06 39.8 15.2 90 392-483 44-133 (165)
225 PF10300 DUF3808: Protein of u 96.2 0.82 1.8E-05 46.3 19.9 116 119-237 246-374 (468)
226 PF13281 DUF4071: Domain of un 96.2 1.3 2.8E-05 42.6 20.5 31 419-449 304-334 (374)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.066 1.4E-06 51.9 10.7 99 452-556 72-176 (453)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.11 2.4E-06 50.4 11.9 65 418-484 73-141 (453)
229 PF12921 ATP13: Mitochondrial 95.9 0.16 3.4E-06 40.7 10.8 83 454-536 1-99 (126)
230 PF12921 ATP13: Mitochondrial 95.9 0.15 3.3E-06 40.7 10.6 85 419-503 1-101 (126)
231 KOG1585 Protein required for f 95.9 0.7 1.5E-05 40.8 15.0 55 318-373 193-250 (308)
232 PF10300 DUF3808: Protein of u 95.9 2.4 5.2E-05 43.0 23.0 175 126-307 177-374 (468)
233 KOG4555 TPR repeat-containing 95.9 0.13 2.9E-06 40.2 9.6 92 149-240 51-145 (175)
234 KOG0543 FKBP-type peptidyl-pro 95.8 0.14 3E-06 48.7 11.6 91 113-203 215-319 (397)
235 COG4105 ComL DNA uptake lipopr 95.8 1.3 2.8E-05 39.7 20.2 55 186-240 45-101 (254)
236 PF04053 Coatomer_WDAD: Coatom 95.8 0.25 5.5E-06 49.1 13.9 130 108-269 297-426 (443)
237 smart00299 CLH Clathrin heavy 95.8 0.77 1.7E-05 37.7 14.9 126 109-256 10-136 (140)
238 KOG0543 FKBP-type peptidyl-pro 95.8 0.19 4.1E-06 47.7 12.1 140 390-553 213-354 (397)
239 KOG4555 TPR repeat-containing 95.7 0.26 5.5E-06 38.7 10.6 91 464-555 52-145 (175)
240 PF04184 ST7: ST7 protein; In 95.7 1.1 2.5E-05 43.9 17.3 60 459-518 263-323 (539)
241 KOG2280 Vacuolar assembly/sort 95.6 3.5 7.5E-05 42.7 32.4 112 419-549 683-794 (829)
242 COG1729 Uncharacterized protei 95.5 0.27 5.9E-06 44.3 11.8 96 457-554 144-244 (262)
243 PF08631 SPO22: Meiosis protei 95.5 2.1 4.6E-05 40.0 26.3 61 283-344 87-150 (278)
244 COG3118 Thioredoxin domain-con 95.4 1.8 3.8E-05 39.7 16.4 118 116-237 144-263 (304)
245 PF04053 Coatomer_WDAD: Coatom 95.3 0.8 1.7E-05 45.7 15.6 131 387-550 297-427 (443)
246 KOG1920 IkappaB kinase complex 95.3 4.1 8.8E-05 44.6 21.1 103 321-443 945-1049(1265)
247 COG0457 NrfG FOG: TPR repeat [ 95.3 2 4.4E-05 38.4 30.7 198 353-553 62-264 (291)
248 PF09205 DUF1955: Domain of un 95.3 1.1 2.4E-05 35.4 15.5 59 286-345 92-150 (161)
249 PRK11906 transcriptional regul 95.3 1.3 2.8E-05 43.5 16.1 113 120-236 318-433 (458)
250 KOG2610 Uncharacterized conser 95.3 0.57 1.2E-05 43.3 12.9 162 361-525 114-283 (491)
251 PF13512 TPR_18: Tetratricopep 95.2 0.81 1.8E-05 37.1 12.4 71 185-255 20-92 (142)
252 COG3118 Thioredoxin domain-con 95.2 1.5 3.2E-05 40.2 15.2 123 184-309 143-265 (304)
253 KOG2610 Uncharacterized conser 95.1 0.5 1.1E-05 43.6 12.2 153 151-305 113-272 (491)
254 COG1729 Uncharacterized protei 95.0 0.35 7.6E-06 43.6 10.9 95 108-204 144-244 (262)
255 PF13512 TPR_18: Tetratricopep 94.9 0.75 1.6E-05 37.3 11.5 73 151-223 20-95 (142)
256 smart00299 CLH Clathrin heavy 94.8 1.8 4E-05 35.4 15.5 123 181-326 13-136 (140)
257 KOG2114 Vacuolar assembly/sort 94.8 6.3 0.00014 41.5 22.7 218 107-342 284-517 (933)
258 KOG3941 Intermediate in Toll s 94.8 0.29 6.3E-06 44.0 9.4 104 314-436 66-174 (406)
259 KOG3941 Intermediate in Toll s 94.7 0.31 6.7E-06 43.8 9.5 51 452-502 64-119 (406)
260 PRK11906 transcriptional regul 94.6 2.1 4.5E-05 42.1 15.6 147 400-552 273-434 (458)
261 KOG1258 mRNA processing protei 94.5 6.1 0.00013 40.0 36.3 407 140-569 44-484 (577)
262 COG4785 NlpI Lipoprotein NlpI, 94.4 3.1 6.8E-05 36.2 17.6 63 141-203 99-161 (297)
263 PF13428 TPR_14: Tetratricopep 94.3 0.17 3.8E-06 31.6 5.4 38 108-146 3-40 (44)
264 PF08631 SPO22: Meiosis protei 94.3 4.6 9.9E-05 37.8 26.2 61 353-414 87-150 (278)
265 COG4105 ComL DNA uptake lipopr 94.3 3.8 8.3E-05 36.8 20.4 54 392-446 174-230 (254)
266 PF13428 TPR_14: Tetratricopep 94.3 0.12 2.5E-06 32.4 4.5 36 145-180 5-40 (44)
267 KOG1550 Extracellular protein 94.2 8.2 0.00018 40.2 25.7 178 191-380 228-427 (552)
268 COG0457 NrfG FOG: TPR repeat [ 94.2 3.9 8.4E-05 36.5 30.3 201 316-519 60-265 (291)
269 PF04097 Nic96: Nup93/Nic96; 93.9 10 0.00022 40.1 25.1 86 288-378 266-355 (613)
270 COG4649 Uncharacterized protei 93.7 3.6 7.8E-05 34.4 14.6 122 432-553 70-195 (221)
271 PF04184 ST7: ST7 protein; In 93.7 7.9 0.00017 38.4 20.4 61 284-344 263-324 (539)
272 COG4649 Uncharacterized protei 93.6 3.7 8.1E-05 34.3 13.5 133 106-239 59-196 (221)
273 KOG1585 Protein required for f 93.6 5 0.00011 35.7 17.2 208 106-338 31-250 (308)
274 PF13176 TPR_7: Tetratricopept 93.5 0.17 3.7E-06 30.0 4.0 26 108-133 1-26 (36)
275 KOG1941 Acetylcholine receptor 93.5 1.8 4E-05 40.6 12.2 164 213-377 86-273 (518)
276 COG3629 DnrI DNA-binding trans 93.2 1.2 2.7E-05 40.8 10.7 79 455-534 153-236 (280)
277 COG3629 DnrI DNA-binding trans 93.1 1.2 2.6E-05 41.0 10.5 79 420-499 153-236 (280)
278 KOG1941 Acetylcholine receptor 93.0 4 8.7E-05 38.4 13.6 128 391-518 128-274 (518)
279 PF09205 DUF1955: Domain of un 92.9 3.9 8.4E-05 32.5 15.3 63 493-556 89-151 (161)
280 PF09613 HrpB1_HrpK: Bacterial 92.7 5.2 0.00011 33.2 13.9 107 431-544 21-128 (160)
281 PF13176 TPR_7: Tetratricopept 92.4 0.34 7.3E-06 28.7 4.2 23 493-515 2-24 (36)
282 PF13431 TPR_17: Tetratricopep 91.9 0.14 3.1E-06 29.9 2.1 23 172-194 10-32 (34)
283 PF10602 RPN7: 26S proteasome 91.9 2.6 5.6E-05 36.2 10.6 96 457-552 38-140 (177)
284 KOG0276 Vesicle coat complex C 91.7 6.2 0.00014 39.9 13.9 99 186-305 648-746 (794)
285 PF13431 TPR_17: Tetratricopep 91.6 0.25 5.5E-06 28.8 2.9 21 489-509 12-32 (34)
286 KOG4570 Uncharacterized conser 91.5 2.8 6.1E-05 38.6 10.6 46 401-446 116-161 (418)
287 PF10602 RPN7: 26S proteasome 91.4 3.2 6.9E-05 35.7 10.7 61 177-237 38-100 (177)
288 PF07035 Mic1: Colon cancer-as 91.3 8.1 0.00018 32.5 15.3 36 196-231 15-50 (167)
289 KOG1550 Extracellular protein 91.1 22 0.00047 37.2 26.7 244 292-555 261-539 (552)
290 PF13170 DUF4003: Protein of u 91.1 14 0.0003 34.8 21.0 126 263-390 80-222 (297)
291 PF07035 Mic1: Colon cancer-as 91.0 8.6 0.00019 32.4 15.2 27 235-261 19-45 (167)
292 PF00515 TPR_1: Tetratricopept 90.8 0.66 1.4E-05 26.8 4.3 23 530-552 6-28 (34)
293 PF06552 TOM20_plant: Plant sp 90.5 5.1 0.00011 33.9 10.5 59 473-535 53-123 (186)
294 PF09613 HrpB1_HrpK: Bacterial 90.5 9.2 0.0002 31.8 12.7 13 120-132 24-36 (160)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 90.1 2.5 5.4E-05 31.4 7.3 49 471-519 23-71 (103)
296 PF00637 Clathrin: Region in C 90.0 0.0081 1.8E-07 49.8 -6.3 83 112-200 13-95 (143)
297 KOG2066 Vacuolar assembly/sort 90.0 28 0.00061 36.7 29.3 22 286-307 511-532 (846)
298 PF00515 TPR_1: Tetratricopept 90.0 1.1 2.3E-05 25.9 4.7 32 491-524 2-33 (34)
299 PRK09687 putative lyase; Provi 89.8 17 0.00037 33.9 27.4 59 453-518 204-262 (280)
300 PF02259 FAT: FAT domain; Int 89.8 20 0.00044 34.7 22.8 66 383-448 144-212 (352)
301 PF07719 TPR_2: Tetratricopept 89.7 0.91 2E-05 26.1 4.3 22 531-552 7-28 (34)
302 PF07719 TPR_2: Tetratricopept 89.7 1.1 2.3E-05 25.8 4.5 32 491-524 2-33 (34)
303 PF02284 COX5A: Cytochrome c o 89.5 7 0.00015 29.5 9.3 47 473-519 28-74 (108)
304 PRK09687 putative lyase; Provi 89.5 18 0.0004 33.8 28.8 233 314-571 36-278 (280)
305 PF06552 TOM20_plant: Plant sp 89.2 3.8 8.3E-05 34.6 8.8 62 506-571 51-124 (186)
306 KOG4570 Uncharacterized conser 88.7 6 0.00013 36.6 10.3 103 415-519 59-164 (418)
307 PF13170 DUF4003: Protein of u 88.6 22 0.00047 33.5 21.1 49 192-240 79-133 (297)
308 COG4785 NlpI Lipoprotein NlpI, 88.5 16 0.00036 31.9 16.6 76 164-240 88-163 (297)
309 PF02284 COX5A: Cytochrome c o 88.2 8.9 0.00019 28.9 9.1 60 508-568 28-87 (108)
310 KOG4234 TPR repeat-containing 87.1 10 0.00022 32.7 10.0 90 428-519 103-197 (271)
311 cd00923 Cyt_c_Oxidase_Va Cytoc 87.0 5.4 0.00012 29.7 7.3 45 438-482 25-69 (103)
312 PF13374 TPR_10: Tetratricopep 86.5 1.5 3.3E-05 26.6 4.0 28 107-134 3-30 (42)
313 PF10345 Cohesin_load: Cohesin 86.5 48 0.001 35.2 38.7 168 104-272 57-252 (608)
314 KOG2396 HAT (Half-A-TPR) repea 86.5 37 0.00081 33.9 38.4 242 299-553 301-558 (568)
315 PF13374 TPR_10: Tetratricopep 86.3 2 4.4E-05 26.0 4.5 26 492-517 4-29 (42)
316 KOG2066 Vacuolar assembly/sort 86.1 50 0.0011 35.0 28.3 54 183-238 364-420 (846)
317 KOG4648 Uncharacterized conser 85.9 4.3 9.4E-05 37.9 7.9 93 428-524 105-197 (536)
318 COG2976 Uncharacterized protei 85.8 22 0.00048 30.7 15.6 88 463-555 97-189 (207)
319 PF10345 Cohesin_load: Cohesin 85.7 53 0.0011 34.9 40.9 438 104-552 28-604 (608)
320 KOG4234 TPR repeat-containing 85.1 12 0.00026 32.3 9.6 91 151-242 105-200 (271)
321 PRK11619 lytic murein transgly 85.1 57 0.0012 34.7 33.1 232 103-342 126-373 (644)
322 KOG4648 Uncharacterized conser 85.0 5.6 0.00012 37.2 8.1 88 114-203 105-193 (536)
323 COG3947 Response regulator con 84.5 33 0.00072 31.6 17.9 73 492-565 281-358 (361)
324 KOG1920 IkappaB kinase complex 84.5 74 0.0016 35.6 28.1 20 111-130 682-701 (1265)
325 COG2976 Uncharacterized protei 84.5 26 0.00056 30.3 14.6 127 387-520 56-189 (207)
326 PF11207 DUF2989: Protein of u 84.3 11 0.00025 32.6 9.3 21 524-544 177-197 (203)
327 TIGR02561 HrpB1_HrpK type III 84.2 22 0.00047 29.2 11.3 16 187-202 56-71 (153)
328 KOG0276 Vesicle coat complex C 84.2 17 0.00036 37.0 11.5 100 361-481 648-747 (794)
329 COG4455 ImpE Protein of avirul 84.0 7.4 0.00016 34.0 7.9 77 457-534 3-81 (273)
330 PF13181 TPR_8: Tetratricopept 83.3 2.3 4.9E-05 24.4 3.5 23 495-517 6-28 (34)
331 COG4455 ImpE Protein of avirul 82.8 7.2 0.00016 34.1 7.5 49 112-161 7-55 (273)
332 PF11207 DUF2989: Protein of u 82.4 15 0.00034 31.8 9.3 80 430-511 117-199 (203)
333 PRK15180 Vi polysaccharide bio 82.4 15 0.00033 36.1 10.2 88 254-343 332-419 (831)
334 PF02259 FAT: FAT domain; Int 82.2 50 0.0011 31.9 25.2 67 348-414 144-213 (352)
335 PF07721 TPR_4: Tetratricopept 81.9 2.3 5.1E-05 22.8 2.9 22 109-130 4-25 (26)
336 PF04097 Nic96: Nup93/Nic96; 81.2 80 0.0017 33.5 24.5 213 111-344 116-356 (613)
337 TIGR02561 HrpB1_HrpK type III 81.0 30 0.00064 28.5 12.9 49 432-484 22-73 (153)
338 PF00637 Clathrin: Region in C 79.4 1 2.2E-05 37.2 1.4 52 183-234 15-66 (143)
339 PF13181 TPR_8: Tetratricopept 79.4 5.1 0.00011 22.9 4.1 28 108-135 3-30 (34)
340 KOG2396 HAT (Half-A-TPR) repea 79.3 73 0.0016 32.0 38.1 219 333-564 300-534 (568)
341 PF13174 TPR_6: Tetratricopept 79.2 3.2 6.8E-05 23.5 3.2 22 532-553 7-28 (33)
342 TIGR03504 FimV_Cterm FimV C-te 78.9 4.6 0.0001 25.2 3.8 24 181-204 5-28 (44)
343 TIGR03504 FimV_Cterm FimV C-te 78.9 4.7 0.0001 25.1 3.8 26 111-136 4-29 (44)
344 KOG1464 COP9 signalosome, subu 75.9 63 0.0014 29.4 18.8 187 257-443 39-254 (440)
345 PF13174 TPR_6: Tetratricopept 75.6 4.1 9E-05 23.0 2.9 26 110-135 4-29 (33)
346 COG0790 FOG: TPR repeat, SEL1 74.9 75 0.0016 29.8 22.4 86 472-564 172-276 (292)
347 KOG4507 Uncharacterized conser 74.3 20 0.00043 36.4 8.6 103 152-256 618-721 (886)
348 KOG0403 Neoplastic transformat 73.9 96 0.0021 30.6 17.7 373 145-540 218-631 (645)
349 KOG2063 Vacuolar assembly/sort 73.3 1.5E+02 0.0033 32.6 22.0 60 109-170 310-375 (877)
350 PF10579 Rapsyn_N: Rapsyn N-te 73.3 12 0.00026 26.8 5.0 46 467-512 18-65 (80)
351 PF07575 Nucleopor_Nup85: Nup8 72.7 1.3E+02 0.0028 31.6 17.7 23 45-70 149-171 (566)
352 KOG4507 Uncharacterized conser 72.0 24 0.00051 35.9 8.5 101 258-360 620-720 (886)
353 KOG4077 Cytochrome c oxidase, 72.0 28 0.00062 27.5 7.2 59 473-532 67-125 (149)
354 KOG0292 Vesicle coat complex C 71.7 1.6E+02 0.0034 32.1 25.1 95 119-238 606-700 (1202)
355 COG2909 MalT ATP-dependent tra 71.4 1.6E+02 0.0034 32.1 34.8 338 67-410 301-684 (894)
356 PF13929 mRNA_stabil: mRNA sta 71.4 88 0.0019 29.1 17.3 64 276-339 198-262 (292)
357 TIGR02508 type_III_yscG type I 71.3 42 0.00091 25.4 8.7 52 463-520 47-98 (115)
358 KOG2063 Vacuolar assembly/sort 71.3 1.7E+02 0.0036 32.3 19.4 116 247-362 506-638 (877)
359 KOG4077 Cytochrome c oxidase, 71.2 32 0.00069 27.2 7.3 41 442-482 71-111 (149)
360 PF14853 Fis1_TPR_C: Fis1 C-te 70.4 17 0.00036 23.8 5.0 27 534-562 10-36 (53)
361 PF13929 mRNA_stabil: mRNA sta 70.0 94 0.002 28.9 18.0 114 401-514 144-262 (292)
362 PF11848 DUF3368: Domain of un 69.8 20 0.00043 22.9 5.2 33 536-568 13-45 (48)
363 COG1747 Uncharacterized N-term 69.8 1.3E+02 0.0028 30.4 25.8 164 314-484 65-234 (711)
364 KOG2908 26S proteasome regulat 69.4 70 0.0015 30.3 10.4 21 498-518 123-143 (380)
365 PF11663 Toxin_YhaV: Toxin wit 69.3 5.5 0.00012 31.7 3.0 32 117-150 106-137 (140)
366 TIGR02508 type_III_yscG type I 69.1 47 0.001 25.1 8.0 14 290-303 49-62 (115)
367 smart00028 TPR Tetratricopepti 68.6 11 0.00023 20.3 3.7 20 497-516 8-27 (34)
368 PF07163 Pex26: Pex26 protein; 68.3 85 0.0019 28.9 10.5 86 426-513 89-181 (309)
369 COG5159 RPN6 26S proteasome re 68.3 1E+02 0.0022 28.5 19.1 54 110-163 7-67 (421)
370 KOG1464 COP9 signalosome, subu 66.6 1E+02 0.0023 28.1 22.3 270 204-481 20-329 (440)
371 PF04910 Tcf25: Transcriptiona 66.3 1.4E+02 0.0029 29.3 19.1 100 172-271 37-165 (360)
372 PF13762 MNE1: Mitochondrial s 65.9 74 0.0016 26.1 11.1 78 494-571 43-126 (145)
373 COG3947 Response regulator con 65.9 1.2E+02 0.0025 28.3 17.3 59 458-517 282-340 (361)
374 COG2909 MalT ATP-dependent tra 65.7 2.1E+02 0.0045 31.2 32.0 226 220-445 425-684 (894)
375 COG1747 Uncharacterized N-term 65.3 1.6E+02 0.0035 29.8 26.0 181 277-465 63-249 (711)
376 KOG2297 Predicted translation 65.2 1.2E+02 0.0026 28.3 14.5 16 282-297 323-338 (412)
377 PHA02875 ankyrin repeat protei 65.1 1.5E+02 0.0033 29.5 15.5 180 114-315 40-230 (413)
378 PF08424 NRDE-2: NRDE-2, neces 65.1 1.3E+02 0.0029 28.8 17.8 100 382-483 16-130 (321)
379 PF10579 Rapsyn_N: Rapsyn N-te 64.9 21 0.00045 25.6 4.8 48 502-549 18-67 (80)
380 PF09986 DUF2225: Uncharacteri 64.7 79 0.0017 28.1 9.8 64 492-555 120-195 (214)
381 PRK11619 lytic murein transgly 64.6 2E+02 0.0044 30.7 40.0 251 148-412 106-373 (644)
382 PF14689 SPOB_a: Sensor_kinase 63.8 21 0.00045 24.3 4.7 24 529-552 27-50 (62)
383 KOG2471 TPR repeat-containing 62.9 1.7E+02 0.0038 29.4 14.5 106 430-537 250-381 (696)
384 PHA02875 ankyrin repeat protei 62.9 1.7E+02 0.0036 29.2 16.5 16 472-487 297-312 (413)
385 KOG2297 Predicted translation 62.4 1.4E+02 0.003 28.0 16.2 171 278-475 163-341 (412)
386 KOG0890 Protein kinase of the 62.1 3.8E+02 0.0083 33.1 26.8 150 180-337 1388-1540(2382)
387 PF07163 Pex26: Pex26 protein; 62.0 1.3E+02 0.0028 27.9 10.4 89 215-303 88-181 (309)
388 COG0790 FOG: TPR repeat, SEL1 60.7 1.5E+02 0.0032 27.8 25.0 47 332-381 172-222 (292)
389 KOG4642 Chaperone-dependent E3 59.1 1.4E+02 0.003 27.0 10.4 81 119-201 23-104 (284)
390 PF11663 Toxin_YhaV: Toxin wit 58.6 9 0.00019 30.6 2.4 31 502-534 107-137 (140)
391 PF11846 DUF3366: Domain of un 58.6 31 0.00067 30.1 6.2 31 522-552 141-171 (193)
392 KOG4521 Nuclear pore complex, 58.4 3E+02 0.0065 31.2 13.9 25 110-134 924-948 (1480)
393 KOG0686 COP9 signalosome, subu 57.6 2E+02 0.0043 28.3 14.0 61 143-203 152-215 (466)
394 PF09670 Cas_Cas02710: CRISPR- 57.5 1.9E+02 0.0042 28.4 12.0 58 112-170 137-198 (379)
395 KOG0991 Replication factor C, 57.3 1.5E+02 0.0032 26.7 13.0 76 412-490 186-273 (333)
396 PF14689 SPOB_a: Sensor_kinase 57.3 35 0.00076 23.2 4.9 30 489-518 22-51 (62)
397 PHA03100 ankyrin repeat protei 57.2 2.3E+02 0.005 28.9 13.9 75 197-279 123-203 (480)
398 KOG1308 Hsp70-interacting prot 57.0 8.2 0.00018 36.2 2.3 119 430-553 124-243 (377)
399 KOG3364 Membrane protein invol 55.5 1.1E+02 0.0024 24.8 9.9 66 453-518 30-99 (149)
400 PRK10941 hypothetical protein; 55.4 1.3E+02 0.0029 27.9 9.9 77 146-222 186-263 (269)
401 KOG1586 Protein required for f 55.1 1.6E+02 0.0035 26.5 22.0 29 325-353 164-192 (288)
402 KOG1586 Protein required for f 55.1 1.6E+02 0.0035 26.5 22.6 20 431-450 165-184 (288)
403 KOG0991 Replication factor C, 53.8 1.7E+02 0.0037 26.4 13.7 102 430-535 169-282 (333)
404 PF14561 TPR_20: Tetratricopep 53.1 92 0.002 23.1 8.0 33 172-204 19-51 (90)
405 smart00386 HAT HAT (Half-A-TPR 52.8 26 0.00057 19.2 3.4 14 121-134 2-15 (33)
406 PRK09857 putative transposase; 52.1 1.4E+02 0.0029 28.2 9.6 58 501-559 217-274 (292)
407 PF11848 DUF3368: Domain of un 51.8 61 0.0013 20.6 5.1 35 115-149 11-45 (48)
408 COG5187 RPN7 26S proteasome re 51.7 1.9E+02 0.0042 26.9 9.7 98 454-553 114-220 (412)
409 cd00280 TRFH Telomeric Repeat 51.7 95 0.0021 26.6 7.4 22 182-203 118-139 (200)
410 PF12862 Apc5: Anaphase-promot 51.7 99 0.0021 23.1 7.1 23 496-518 47-69 (94)
411 PF11846 DUF3366: Domain of un 51.6 81 0.0018 27.5 7.7 33 486-518 140-172 (193)
412 cd08819 CARD_MDA5_2 Caspase ac 51.3 96 0.0021 22.8 7.0 65 474-544 21-85 (88)
413 PF14853 Fis1_TPR_C: Fis1 C-te 50.5 69 0.0015 21.0 5.3 20 499-518 10-29 (53)
414 PF09670 Cas_Cas02710: CRISPR- 50.1 2E+02 0.0044 28.3 10.8 56 183-239 139-198 (379)
415 KOG0376 Serine-threonine phosp 49.9 43 0.00092 33.3 5.9 52 395-448 14-66 (476)
416 PRK10941 hypothetical protein; 49.7 1.9E+02 0.0042 26.8 10.0 58 460-518 186-243 (269)
417 KOG4642 Chaperone-dependent E3 49.6 2E+02 0.0044 26.0 11.9 83 395-481 20-104 (284)
418 PF14561 TPR_20: Tetratricopep 49.3 1.1E+02 0.0023 22.8 7.7 55 103-157 19-74 (90)
419 KOG1308 Hsp70-interacting prot 47.8 13 0.00027 35.1 2.0 94 153-248 126-220 (377)
420 PF09477 Type_III_YscG: Bacter 47.2 1.3E+02 0.0028 23.2 9.4 79 435-520 21-99 (116)
421 PF10366 Vps39_1: Vacuolar sor 46.9 1.3E+02 0.0029 23.2 9.2 26 178-203 42-67 (108)
422 cd08819 CARD_MDA5_2 Caspase ac 46.2 1.2E+02 0.0026 22.4 7.4 35 222-261 48-82 (88)
423 PF13762 MNE1: Mitochondrial s 46.1 1.7E+02 0.0037 24.1 10.5 80 283-362 42-127 (145)
424 PRK10564 maltose regulon perip 45.9 46 0.001 31.0 5.2 35 173-207 254-289 (303)
425 TIGR01228 hutU urocanate hydra 45.4 3E+02 0.0066 27.8 10.7 68 223-303 207-279 (545)
426 KOG1114 Tripeptidyl peptidase 45.3 4.7E+02 0.01 29.0 14.0 12 368-379 1093-1104(1304)
427 PRK14956 DNA polymerase III su 45.2 3.6E+02 0.0077 27.6 13.2 102 26-143 183-285 (484)
428 KOG2471 TPR repeat-containing 45.1 3.5E+02 0.0075 27.4 15.9 86 117-202 28-127 (696)
429 cd00280 TRFH Telomeric Repeat 44.4 1.7E+02 0.0037 25.1 7.8 22 462-483 118-139 (200)
430 PRK10564 maltose regulon perip 44.4 59 0.0013 30.3 5.6 30 493-522 260-289 (303)
431 KOG0890 Protein kinase of the 43.4 7.5E+02 0.016 30.9 33.0 62 350-414 1670-1731(2382)
432 COG0735 Fur Fe2+/Zn2+ uptake r 43.0 1.4E+02 0.0031 24.5 7.4 59 198-257 9-67 (145)
433 COG2812 DnaX DNA polymerase II 42.7 4E+02 0.0087 27.5 12.9 111 15-142 165-281 (515)
434 COG5108 RPO41 Mitochondrial DN 42.7 1.5E+02 0.0032 31.1 8.5 91 460-553 33-131 (1117)
435 KOG4567 GTPase-activating prot 42.6 1.6E+02 0.0034 27.7 7.9 57 440-501 263-319 (370)
436 KOG3364 Membrane protein invol 42.4 1.9E+02 0.004 23.6 9.6 66 418-484 30-100 (149)
437 PF10475 DUF2450: Protein of u 42.0 2.3E+02 0.0051 26.6 9.6 49 183-237 106-154 (291)
438 KOG0687 26S proteasome regulat 41.7 3.2E+02 0.0069 26.0 15.1 95 351-447 105-208 (393)
439 PF12862 Apc5: Anaphase-promot 41.5 1.5E+02 0.0032 22.1 7.4 17 117-133 9-25 (94)
440 COG5187 RPN7 26S proteasome re 41.1 3E+02 0.0066 25.6 14.0 97 385-483 115-220 (412)
441 PRK09857 putative transposase; 40.6 2E+02 0.0044 27.1 8.8 66 178-244 209-274 (292)
442 KOG4567 GTPase-activating prot 40.3 1.9E+02 0.0041 27.2 8.0 71 230-305 263-343 (370)
443 PF11817 Foie-gras_1: Foie gra 39.7 1.7E+02 0.0038 26.7 8.2 21 461-481 184-204 (247)
444 KOG4814 Uncharacterized conser 39.6 2.3E+02 0.005 29.6 9.2 94 107-202 356-455 (872)
445 PF04762 IKI3: IKI3 family; I 39.5 6.1E+02 0.013 28.7 16.9 29 421-449 813-843 (928)
446 KOG0376 Serine-threonine phosp 38.5 67 0.0014 32.0 5.3 103 114-220 12-115 (476)
447 KOG4521 Nuclear pore complex, 38.3 5.9E+02 0.013 29.1 12.4 126 211-342 984-1130(1480)
448 PRK14956 DNA polymerase III su 37.8 4.6E+02 0.01 26.8 11.8 45 437-483 183-228 (484)
449 PF09454 Vps23_core: Vps23 cor 37.4 59 0.0013 22.4 3.5 48 208-256 6-53 (65)
450 COG5108 RPO41 Mitochondrial DN 36.3 2.4E+02 0.0052 29.7 8.8 91 425-518 33-131 (1117)
451 KOG2034 Vacuolar sorting prote 36.3 6.2E+02 0.013 27.8 27.3 172 112-306 364-556 (911)
452 PF08311 Mad3_BUB1_I: Mad3/BUB 36.2 2.2E+02 0.0049 22.7 8.4 42 473-514 81-123 (126)
453 PRK13342 recombination factor 36.2 4.6E+02 0.0099 26.3 19.3 32 399-430 244-275 (413)
454 PF02184 HAT: HAT (Half-A-TPR) 36.1 88 0.0019 18.0 3.4 22 506-529 3-24 (32)
455 COG2178 Predicted RNA-binding 36.0 2.9E+02 0.0064 24.0 10.2 17 536-552 132-148 (204)
456 KOG0128 RNA-binding protein SA 35.6 6.2E+02 0.013 27.6 37.2 97 140-238 112-218 (881)
457 PF04190 DUF410: Protein of un 35.5 3.6E+02 0.0078 24.9 18.9 25 279-303 89-113 (260)
458 PF02607 B12-binding_2: B12 bi 35.0 66 0.0014 22.9 3.8 39 501-539 12-50 (79)
459 PRK15180 Vi polysaccharide bio 34.8 4.9E+02 0.011 26.3 30.9 120 118-240 301-421 (831)
460 PRK08691 DNA polymerase III su 34.7 6.2E+02 0.013 27.4 12.0 85 436-523 180-278 (709)
461 PF09477 Type_III_YscG: Bacter 34.3 2.2E+02 0.0048 22.0 9.4 13 226-238 22-34 (116)
462 PF10366 Vps39_1: Vacuolar sor 34.2 2.2E+02 0.0048 22.0 7.8 27 247-273 41-67 (108)
463 PF07575 Nucleopor_Nup85: Nup8 34.1 5.8E+02 0.013 26.9 22.5 58 384-443 404-461 (566)
464 PF08424 NRDE-2: NRDE-2, neces 34.0 4.3E+02 0.0093 25.3 18.5 99 347-447 16-129 (321)
465 PF02847 MA3: MA3 domain; Int 33.9 2.2E+02 0.0047 21.9 6.9 18 463-480 10-27 (113)
466 PRK06645 DNA polymerase III su 32.9 5.7E+02 0.012 26.4 12.2 101 25-140 189-291 (507)
467 PRK14958 DNA polymerase III su 32.8 5.8E+02 0.013 26.5 14.0 99 25-140 180-279 (509)
468 KOG0545 Aryl-hydrocarbon recep 32.8 3.9E+02 0.0084 24.4 9.8 94 110-203 182-292 (329)
469 PF11817 Foie-gras_1: Foie gra 32.2 2.4E+02 0.0052 25.8 7.8 57 425-481 183-244 (247)
470 PRK08691 DNA polymerase III su 31.7 6.9E+02 0.015 27.0 13.6 109 15-140 165-279 (709)
471 KOG0687 26S proteasome regulat 31.6 4.7E+02 0.01 25.0 15.2 98 385-484 104-210 (393)
472 PRK13184 pknD serine/threonine 31.3 8.1E+02 0.018 27.7 27.4 390 114-550 483-896 (932)
473 COG0735 Fur Fe2+/Zn2+ uptake r 31.3 2.5E+02 0.0055 23.1 7.0 59 235-294 11-69 (145)
474 COG5116 RPN2 26S proteasome re 31.2 4E+02 0.0088 27.5 9.3 24 108-131 61-84 (926)
475 KOG2659 LisH motif-containing 31.1 3.9E+02 0.0085 24.0 9.5 99 417-517 23-130 (228)
476 COG4976 Predicted methyltransf 30.9 98 0.0021 27.7 4.6 51 153-203 7-57 (287)
477 PF02847 MA3: MA3 domain; Int 30.9 2.5E+02 0.0054 21.6 6.9 20 286-305 8-27 (113)
478 cd07153 Fur_like Ferric uptake 30.8 1.4E+02 0.003 23.2 5.3 48 111-158 5-52 (116)
479 KOG0551 Hsp90 co-chaperone CNS 30.3 4.3E+02 0.0093 25.3 8.8 95 422-518 83-181 (390)
480 PF12796 Ank_2: Ankyrin repeat 29.9 1.4E+02 0.0031 21.5 5.1 6 220-225 33-38 (89)
481 PF09454 Vps23_core: Vps23 cor 29.6 1.1E+02 0.0023 21.1 3.8 46 349-395 7-52 (65)
482 PF10255 Paf67: RNA polymerase 29.1 3.1E+02 0.0068 27.2 8.2 100 243-342 70-191 (404)
483 COG2178 Predicted RNA-binding 28.9 3.9E+02 0.0085 23.3 10.8 18 219-236 38-55 (204)
484 PF00244 14-3-3: 14-3-3 protei 28.9 4.4E+02 0.0096 23.9 10.9 40 251-290 7-46 (236)
485 COG2256 MGS1 ATPase related to 28.1 6E+02 0.013 25.2 15.1 69 383-451 244-320 (436)
486 PF12926 MOZART2: Mitotic-spin 27.9 2.5E+02 0.0054 20.7 8.0 43 511-553 29-71 (88)
487 KOG0292 Vesicle coat complex C 26.9 8.5E+02 0.018 27.0 11.1 33 528-560 1087-1119(1202)
488 PF00244 14-3-3: 14-3-3 protei 26.9 4.8E+02 0.01 23.6 11.8 19 500-518 179-197 (236)
489 PF01475 FUR: Ferric uptake re 26.3 1.5E+02 0.0032 23.3 4.8 50 109-158 10-59 (120)
490 COG4941 Predicted RNA polymera 26.1 6E+02 0.013 24.5 11.7 22 532-553 372-393 (415)
491 KOG2300 Uncharacterized conser 26.1 7.1E+02 0.015 25.3 36.6 398 121-526 24-522 (629)
492 PRK11639 zinc uptake transcrip 26.0 4E+02 0.0087 22.6 7.6 44 216-259 31-74 (169)
493 PF04190 DUF410: Protein of un 25.9 5.3E+02 0.011 23.8 17.4 83 172-273 87-169 (260)
494 KOG3636 Uncharacterized conser 25.6 6.8E+02 0.015 25.0 14.0 196 300-501 39-271 (669)
495 PRK07003 DNA polymerase III su 25.6 9.3E+02 0.02 26.5 11.9 92 472-566 181-286 (830)
496 PF12968 DUF3856: Domain of Un 25.2 3.5E+02 0.0076 21.5 8.4 72 490-561 55-141 (144)
497 COG2405 Predicted nucleic acid 25.0 1.6E+02 0.0034 23.9 4.4 35 534-568 118-152 (157)
498 PRK14963 DNA polymerase III su 24.7 7.9E+02 0.017 25.4 12.2 98 25-140 177-275 (504)
499 PF15297 CKAP2_C: Cytoskeleton 24.7 6.4E+02 0.014 24.4 9.1 47 106-152 140-186 (353)
500 PF09868 DUF2095: Uncharacteri 24.6 3.1E+02 0.0068 21.4 5.7 42 111-153 66-107 (128)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-73 Score=602.61 Aligned_cols=504 Identities=20% Similarity=0.289 Sum_probs=456.7
Q ss_pred hHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCC
Q 043999 25 PLKAFSLFNWASRQGL-QHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPV 103 (574)
Q Consensus 25 ~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 103 (574)
...|+++|++|.+.|+ .++...++.++..|.. .+...+|..++..+ +.
T Consensus 386 l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~---~g~~~eAl~lf~~M----------------------------~~ 434 (1060)
T PLN03218 386 IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK---QRAVKEAFRFAKLI----------------------------RN 434 (1060)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH---CCCHHHHHHHHHHc----------------------------CC
Confidence 4456666666655553 3344445555555555 55555555544333 23
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC-CCCCHHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK-VELDVYSFGILI 182 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li 182 (574)
|+.++|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|+++|++|... ..||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999876 789999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhcCC
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGE--LGLVATQHTYTVLICGLFKNGL 260 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~ 260 (574)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .++.||..+|++++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999976 6789999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 261 QKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQ 340 (574)
Q Consensus 261 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 340 (574)
+++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043999 341 MKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSE 420 (574)
Q Consensus 341 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 420 (574)
|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHH
Q 043999 421 VTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCM----K-------------------GNMKEASKL 477 (574)
Q Consensus 421 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-------------------g~~~~A~~~ 477 (574)
.||+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ + +..++|..+
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999865432 1 124679999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043999 478 FNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLK 557 (574)
Q Consensus 478 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 557 (574)
|++|.+.|+.||..||+.++.++++.+..+.+..++++|...+..|+..+|+++++++++. .++|..++++|.+.|+.
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998889999999999999999888899999999999998542 36899999999999999
Q ss_pred CCHH
Q 043999 558 PSVS 561 (574)
Q Consensus 558 p~~~ 561 (574)
|+..
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 9985
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8e-73 Score=598.99 Aligned_cols=502 Identities=20% Similarity=0.293 Sum_probs=476.1
Q ss_pred CCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCCcchhHHHHHHHHHHhcC
Q 043999 41 QHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPVTKSRLYESIIDAHLKSR 120 (574)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 120 (574)
.++...|..++..|++ .|++.+|..+|..|...+. .+++..+++.++.+|.+.|
T Consensus 367 ~~~~~~~~~~y~~l~r---~G~l~eAl~Lfd~M~~~gv-----------------------v~~~~v~~~~li~~~~~~g 420 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLR---DGRIKDCIDLLEDMEKRGL-----------------------LDMDKIYHAKFFKACKKQR 420 (1060)
T ss_pred CCCchHHHHHHHHHHH---CcCHHHHHHHHHHHHhCCC-----------------------CCchHHHHHHHHHHHHHCC
Confidence 3456678888888888 9999999999999975442 2356778899999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043999 121 LSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK-VELDVYSFGILIKGCCEAGDLNKAFEVLN 199 (574)
Q Consensus 121 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 199 (574)
.+++|+.+|+.|.. ||..+|+.++.+|++.|++++|+++|++|... ..||..+|+.+|.+|++.|++++|.++|+
T Consensus 421 ~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~ 496 (1060)
T PLN03218 421 AVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 496 (1060)
T ss_pred CHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 99999999999964 89999999999999999999999999999887 89999999999999999999999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCC
Q 043999 200 QLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQL--NGVS 277 (574)
Q Consensus 200 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~g~~ 277 (574)
+|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.
T Consensus 497 eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 6789
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 043999 278 PSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLI 357 (574)
Q Consensus 278 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 357 (574)
||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 577 PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI 656 (1060)
T PLN03218 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656 (1060)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 043999 358 DGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDME 437 (574)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 437 (574)
++|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c----------
Q 043999 438 KAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCK----E---------- 503 (574)
Q Consensus 438 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~---------- 503 (574)
+|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ +
T Consensus 737 eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f 816 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSF 816 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999865432 1
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHhhhhc
Q 043999 504 ---------GNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYRAKNN 572 (574)
Q Consensus 504 ---------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 572 (574)
+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..++++|...+..|+..+|++||.++.+
T Consensus 817 ~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 817 DSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred hccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 234679999999999999999999999999999999999999999999888889999999999999854
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-73 Score=615.77 Aligned_cols=538 Identities=18% Similarity=0.284 Sum_probs=466.3
Q ss_pred HHHHHhcc-CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 043999 15 NLISRMAK-LPPLKAFSLFNWASRQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLT 93 (574)
Q Consensus 15 ~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 93 (574)
.++..+.+ ....+|+.+|+.|.+.|+.|+..+|..+++.|.. .+.+..+..++..++..+...+....+.++..+.
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEW---KRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh---CCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 55666655 4577899999999999999999999999999988 8899999999999988887777777888888765
Q ss_pred hh---------CCCCCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--------------------
Q 043999 94 QL---------FPSSSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTF-------------------- 144 (574)
Q Consensus 94 ~~---------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-------------------- 144 (574)
+. |. ..+.+|.++||+||.+|++.|++++|+++|++|.+.|+.||.+||
T Consensus 133 ~~g~~~~A~~~f~--~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 133 RFGELVHAWYVFG--KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred hCCChHHHHHHHh--cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 43 22 245689999999999999999999999999999998888887776
Q ss_pred ---------------HHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 043999 145 ---------------NSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPN 209 (574)
Q Consensus 145 ---------------~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 209 (574)
|.++.+|++.|++++|.++|++|.. +|+++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 5566677888999999999999874 6889999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 043999 210 VVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHE 289 (574)
Q Consensus 210 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 289 (574)
..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+++|.+
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~ 363 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISG 363 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 4788899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043999 290 YCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKA 369 (574)
Q Consensus 290 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 369 (574)
|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+++|++.|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 370 FRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKS 449 (574)
Q Consensus 370 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 449 (574)
.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.
T Consensus 444 ~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 444 LEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 999998864 5888999999999999999999999999976 58899999999999999999999999888888888
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043999 450 GFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYS 529 (574)
Q Consensus 450 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 529 (574)
|+.+|..++++|+++|+++|++++|.++|+++ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 88888777777777777777777777777766 4677777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHhhhhcCC
Q 043999 530 STIGVLCQDGKWPEAEVLLNQML-KLGLKPSVSLYNILYRAKNNIE 574 (574)
Q Consensus 530 ~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~~ 574 (574)
.++.+|++.|++++|.++|++|. +.|+.|+..+|++++.+|.+.|
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 77777777777777777777777 5677777777777777777654
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.6e-71 Score=596.85 Aligned_cols=532 Identities=20% Similarity=0.296 Sum_probs=332.7
Q ss_pred hHHHHHHHhcc-CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHH
Q 043999 12 LTLNLISRMAK-LPPLKAFSLFNWASRQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLC 90 (574)
Q Consensus 12 ~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 90 (574)
+...|+..+.+ .+...|+..|+.|. .|+..+|+.+++.+++ .+++++|..++.+|...++.++.++++.++.
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~---~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAK---AGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 44455555443 33455666666664 2455666666666666 6666666666666666566666666666655
Q ss_pred HHHhhCC-----C------CCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 043999 91 HLTQLFP-----S------SSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDK 159 (574)
Q Consensus 91 ~~~~~~~-----~------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~ 159 (574)
.+..... + .....+++++||+||.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLE 271 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHH
Confidence 4322100 0 00123455666666666666666666666666664 2455666666666666666666
Q ss_pred HHHHHHHcccC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 160 GWLFFSENRCK-VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGE 238 (574)
Q Consensus 160 A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 238 (574)
|+++|++|... +.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 66666666554 56666666666666666666666666666666666666666666666666666666666666666643
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 043999 239 LGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTY 318 (574)
Q Consensus 239 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 318 (574)
||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|
T Consensus 352 ----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 352 ----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred ----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 4556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043999 319 NTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKA 398 (574)
Q Consensus 319 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 398 (574)
|.++.+|++.|++++|.++|++|.+ +|..+|+++|.+|++.|+.++|.++|++|.. ++.||..||+.++.+|++.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh
Confidence 6666666666666666666666643 4556666666666666666666666666654 3566666666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043999 399 GNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLF 478 (574)
Q Consensus 399 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 478 (574)
|..+.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+.+ .||..+|+++|.+|++.|+.++|.++|
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666666666666666666666666666666666666554 456666666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043999 479 NSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMN-EKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLK 557 (574)
Q Consensus 479 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 557 (574)
++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|.+++++| .++
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~ 654 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PIT 654 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCC
Confidence 666666666666666666666666666666666666666 4566666666666666666666666666666666 356
Q ss_pred CCHHHHHHHHhhhh
Q 043999 558 PSVSLYNILYRAKN 571 (574)
Q Consensus 558 p~~~~~~~l~~~~~ 571 (574)
||..+|++|+.+|.
T Consensus 655 pd~~~~~aLl~ac~ 668 (857)
T PLN03077 655 PDPAVWGALLNACR 668 (857)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-66 Score=548.69 Aligned_cols=475 Identities=18% Similarity=0.299 Sum_probs=451.1
Q ss_pred CCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCCcchhHHHHHHHHHHhcCC
Q 043999 42 HTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPVTKSRLYESIIDAHLKSRL 121 (574)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 121 (574)
.+..+++.++..+.. .+++.+|..+|..+...+. ..+|..+|+.++.++.+.++
T Consensus 85 ~~~~~~~~~i~~l~~---~g~~~~Al~~f~~m~~~~~-----------------------~~~~~~t~~~ll~a~~~~~~ 138 (697)
T PLN03081 85 KSGVSLCSQIEKLVA---CGRHREALELFEILEAGCP-----------------------FTLPASTYDALVEACIALKS 138 (697)
T ss_pred CCceeHHHHHHHHHc---CCCHHHHHHHHHHHHhcCC-----------------------CCCCHHHHHHHHHHHHhCCC
Confidence 344589999999999 9999999999988764321 23678999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043999 122 SDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQL 201 (574)
Q Consensus 122 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 201 (574)
++.|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.. ||+++||.++.+|++.|++++|.++|++|
T Consensus 139 ~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M 215 (697)
T PLN03081 139 IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREM 215 (697)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 79999999999999999999999999999
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 043999 202 EEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLY 281 (574)
Q Consensus 202 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 281 (574)
.+.|+.|+..+|+.++.++++.|+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|. .+|.+
T Consensus 216 ~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~v 291 (697)
T PLN03081 216 WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTV 291 (697)
T ss_pred HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 46999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 043999 282 TYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFC 361 (574)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 361 (574)
+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|++||..+|++|+++|+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043999 362 DAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFE 441 (574)
Q Consensus 362 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 441 (574)
+.|++++|.++|++|. .||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.+
T Consensus 372 k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 372 KWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 9999999999999996 479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 442 MYSLMQK-SGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKG 520 (574)
Q Consensus 442 ~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 520 (574)
+|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|++|+.+|+..|+++.|..+++++.+
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-- 522 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG-- 522 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--
Confidence 9999975 699999999999999999999999999999876 5789999999999999999999999999999986
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043999 521 LVP-NIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKP 558 (574)
Q Consensus 521 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 558 (574)
+.| +..+|..+++.|++.|++++|.+++++|.+.|+..
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 455 46799999999999999999999999999999753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-65 Score=539.04 Aligned_cols=454 Identities=20% Similarity=0.272 Sum_probs=435.1
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC-CCCCHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSG-VRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK-VELDVYSFGIL 181 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l 181 (574)
.+.++|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.++.+.++++.|.+++..|... +.||+.+||.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456789999999999999999999999998764 7899999999999999999999999999999876 88999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQ 261 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 261 (574)
+.+|++.|++++|.++|++|.+ ||.++|++++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999974 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 262 KDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQM 341 (574)
Q Consensus 262 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 341 (574)
+.+.+++..+.+.|+.||..+|++|+++|+++|++++|.++|++|.+. |.++||.++.+|++.|+.++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC----ChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999754 9999999999999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 043999 342 KMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEV 421 (574)
Q Consensus 342 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 421 (574)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999964 6899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 043999 422 TYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWE-TKLEPNDVVYNMMIFGY 500 (574)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~ 500 (574)
+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|++|.+ .|+.|+..+|+.++.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 59999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHhhhhcCC
Q 043999 501 CKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPS-VSLYNILYRAKNNIE 574 (574)
Q Consensus 501 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~ 574 (574)
++.|++++|.+++++| ++.|+..+|++++.+|+..|+++.|..+++++. ++.|+ ..+|..|+++|++.|
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCC
Confidence 9999999999999876 478999999999999999999999999999997 45776 569999999998765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4e-32 Score=300.78 Aligned_cols=533 Identities=14% Similarity=0.065 Sum_probs=435.2
Q ss_pred hccCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHH----------
Q 043999 20 MAKLPPLKAFSLFNWASRQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLL---------- 89 (574)
Q Consensus 20 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------- 89 (574)
+...++.+|+..+..+.... +.++..+..+...+.. .+++++|...+.+......... .....+-
T Consensus 340 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLA---LGDFEKAAEYLAKATELDPENA-AARTQLGISKLSQGDPS 414 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhCCChH
Confidence 34677888999998887653 3456677778888888 8999999999988765432110 0000000
Q ss_pred ---HHHHhhCCCCCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043999 90 ---CHLTQLFPSSSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSE 166 (574)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 166 (574)
..+.... ...+.+...+..++..|.+.|++++|..+++++.+. .+++..++..+...+...|++++|.+.|++
T Consensus 415 ~A~~~~~~a~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 415 EAIADLETAA---QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHH---hhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 0011110 112234456777888999999999999999999875 355778899999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 043999 167 NRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQH 246 (574)
Q Consensus 167 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 246 (574)
+....+.+...+..++..+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...++++.+.++. +..
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 568 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIE 568 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chh
Confidence 887777788889999999999999999999999998764 346778899999999999999999999999876543 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 247 TYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLC 326 (574)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 326 (574)
.+..++..+.+.|++++|..+++++.+.. +.+..+|..+...|.+.|++++|...|+.+.+..+. +...+..+...+.
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 646 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYA 646 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 78889999999999999999999998753 457788999999999999999999999999877544 6778889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043999 327 KEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASD 406 (574)
Q Consensus 327 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 406 (574)
+.|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|..
T Consensus 647 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998764 5567888999999999999999999999998875 4477788888899999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043999 407 LVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKL 486 (574)
Q Consensus 407 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 486 (574)
.++++.+.+ |+..++..+...+.+.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+..+
T Consensus 725 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 725 AYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 999998874 455777888899999999999999999998764 66788889999999999999999999999988754
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043999 487 EPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNIL 566 (574)
Q Consensus 487 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 566 (574)
++..+++.+...+...|+ .+|+.+++++.+. .+.+..++..+...+.+.|++++|..+++++++.+.. +..++..+
T Consensus 802 -~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l 877 (899)
T TIGR02917 802 -DNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHL 877 (899)
T ss_pred -CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHH
Confidence 378889999999999999 8899999999885 2335567778888999999999999999999987533 77888888
Q ss_pred HhhhhcCC
Q 043999 567 YRAKNNIE 574 (574)
Q Consensus 567 ~~~~~~~~ 574 (574)
..+|...|
T Consensus 878 ~~~~~~~g 885 (899)
T TIGR02917 878 ALALLATG 885 (899)
T ss_pred HHHHHHcC
Confidence 88877654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.1e-32 Score=298.32 Aligned_cols=514 Identities=13% Similarity=0.061 Sum_probs=434.6
Q ss_pred ccCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhh-----
Q 043999 21 AKLPPLKAFSLFNWASRQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQL----- 95 (574)
Q Consensus 21 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 95 (574)
...++.+|..+|+.+.+.. +.+...+..+...+.. .++++.|...+.+.+....... .....+...+...
T Consensus 375 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 375 ALGDFEKAAEYLAKATELD-PENAAARTQLGISKLS---QGDPSEAIADLETAAQLDPELG-RADLLLILSYLRSGQFDK 449 (899)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHhhCCcch-hhHHHHHHHHHhcCCHHH
Confidence 4577889999999987653 2345566667777777 8999999999888875432211 1111111111110
Q ss_pred ----CCC-CCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC
Q 043999 96 ----FPS-SSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK 170 (574)
Q Consensus 96 ----~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 170 (574)
+.. ....+.++.+|..+...|.+.|++++|.+.|+++++.. +.+...+..+...+...|++++|.+.|+++...
T Consensus 450 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000 01124567889999999999999999999999998864 345677888899999999999999999999888
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 043999 171 VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTV 250 (574)
Q Consensus 171 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 250 (574)
.+.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+.+.|++++|..+++++.+... .+..+|..
T Consensus 529 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 606 (899)
T TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLM 606 (899)
T ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 78899999999999999999999999999998764 34677888999999999999999999999987653 47789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043999 251 LICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMR 330 (574)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 330 (574)
+..++.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.+..+. +..++..++..+...|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998764 346778889999999999999999999999887544 78899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043999 331 VQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVRE 410 (574)
Q Consensus 331 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (574)
+++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.|+.+...+ |+..++..+...+.+.|++++|...+++
T Consensus 685 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 685 TESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999875 5677888889999999999999999999999874 5557788899999999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 043999 411 MEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPND 490 (574)
Q Consensus 411 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 490 (574)
+.+.. +.+...+..+...|...|++++|..+|+++.+.. +++..+++.+...+.+.|+ .+|+..++++.+.... +.
T Consensus 762 ~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~ 837 (899)
T TIGR02917 762 WLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IP 837 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-Cc
Confidence 99874 4478889999999999999999999999999875 6788899999999999999 8899999999886433 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 491 VVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 491 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
.++..+...+...|++++|.++++++.+.+. .+..++..++.++++.|++++|.+++++|+
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7788899999999999999999999999753 388999999999999999999999999986
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.9e-23 Score=228.96 Aligned_cols=508 Identities=13% Similarity=0.046 Sum_probs=329.9
Q ss_pred ccCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCC
Q 043999 21 AKLPPLKAFSLFNWASRQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSS 100 (574)
Q Consensus 21 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (574)
.+.+++.|...+..+.... +.++..+..+.+.+.. .++.++|...+.++......++. ...+...+ .
T Consensus 40 ~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~---~g~~~~A~~~l~~l~~~~P~~~~--~~~~~~~~-~------ 106 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLR---QGDSDGAQKLLDRLSQLAPDSNA--YRSSRTTM-L------ 106 (1157)
T ss_pred hhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHhhCCCChH--HHHHHHHH-H------
Confidence 4577777888888776542 3356777788888888 99999999999998765433221 11100000 0
Q ss_pred CCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHH
Q 043999 101 NPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSN-TFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFG 179 (574)
Q Consensus 101 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (574)
...++......+.+.+.+.|++++|++.|+++.+.+ +|+.. ............|+.++|++.++++....|.+...+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~ 185 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRN 185 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 012333344556667777777777777777777653 23321 1111111222347777777777777776666777777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC------------------C--------------CCHHhH--------------
Q 043999 180 ILIKGCCEAGDLNKAFEVLNQLEEMGF------------------S--------------PNVVIY-------------- 213 (574)
Q Consensus 180 ~li~~~~~~g~~~~A~~~~~~m~~~g~------------------~--------------p~~~~~-------------- 213 (574)
.+...+...|+.++|++.++++.+... . |+....
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 777777777777777777777643210 0 000000
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhH--
Q 043999 214 -------TSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSP-SLYTY-- 283 (574)
Q Consensus 214 -------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~-- 283 (574)
......+...|++++|+..|++..+..+. +...+..+...+.+.|++++|+..|++..+..... +...+
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 01123455667778888888777765433 56677777777778888888888887777653221 11111
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 043999 284 ----------NCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITY 353 (574)
Q Consensus 284 ----------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 353 (574)
......+.+.|++++|++.|+++.+..+. +...+..+...+...|++++|++.|+++.+.. +.+...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 12234556777778888877777776443 55666667777777778888877777776642 2222222
Q ss_pred H------------------------------------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043999 354 N------------------------------------------KLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVL 391 (574)
Q Consensus 354 ~------------------------------------------~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 391 (574)
. .+...+...|++++|++.+++..+.... +...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 2 2233455678888888888888776322 56667778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH--------------------------------------------H
Q 043999 392 IRAFSKAGNSKMASDLVREMEERGITPSEVTYTIL--------------------------------------------I 427 (574)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--------------------------------------------i 427 (574)
...|.+.|++++|...++++.+.... +...+..+ .
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 88888888888888888888764321 22222222 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043999 428 DSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSY 507 (574)
Q Consensus 428 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 507 (574)
..+...|+.++|..+++ ..+++...+..+...+.+.|++++|++.|+++++..+. +...+..++..|...|+++
T Consensus 581 ~~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHCCCHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHH
Confidence 23344455555555444 12455666777888899999999999999999986433 6788899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 508 RALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 508 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
+|++.++...+.. +.+..++..+..++...|++++|.+++++++..
T Consensus 655 eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 655 AARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 9999999888742 234566777888889999999999999999864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3.3e-23 Score=230.35 Aligned_cols=398 Identities=13% Similarity=0.075 Sum_probs=268.2
Q ss_pred HHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHhH------------HHH
Q 043999 150 FVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSP-NVVIY------------TSL 216 (574)
Q Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------------~~l 216 (574)
.+...|++++|+..|++.....|.+..++..+...+.+.|++++|++.|++..+..... +...+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 45567888888888888777666777888888888888888888888888877643221 11111 122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH--------
Q 043999 217 IDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIH-------- 288 (574)
Q Consensus 217 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~-------- 288 (574)
...+.+.|++++|+..|++..+..+. +...+..+...+...|++++|++.|++..+... .+...+..+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHH
Confidence 34566778888888888887776543 556677777888888888888888888776531 22333333333
Q ss_pred ----------------------------------HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 289 ----------------------------------EYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEA 334 (574)
Q Consensus 289 ----------------------------------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 334 (574)
.+...|++++|++.|++..+..+. +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 334456666666666666555443 445555556666666666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCChHHHH
Q 043999 335 ERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVV---------TYNVLIRAFSKAGNSKMAS 405 (574)
Q Consensus 335 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---------~~~~li~~~~~~g~~~~A~ 405 (574)
...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 66666655432 2233333333344455566666666655543221111111 1123345566777777777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043999 406 DLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETK 485 (574)
Q Consensus 406 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 485 (574)
.+++. .+.+...+..+...+.+.|++++|...|+.+.+.. +.+...+..++..|...|++++|++.++...+..
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 77662 23455677888899999999999999999999874 5678889999999999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Q 043999 486 LEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGL--VP---NIASYSSTIGVLCQDGKWPEAEVLLNQMLK-LGLKP 558 (574)
Q Consensus 486 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p 558 (574)
. .+...+..+..++...|++++|.++++++..... +| +...+..+...+...|++++|...|++.+. .|+.|
T Consensus 668 p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 N-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred C-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 2 2566677888899999999999999999987522 12 224566678889999999999999999973 45544
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=3.9e-23 Score=195.30 Aligned_cols=435 Identities=15% Similarity=0.086 Sum_probs=334.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhc
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEA 188 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 188 (574)
-..|..-..+.|++.+|.+.....-+.+ +.+......+-.++.+..+.+.....-.......+.-..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 5567777778899999988776655543 223333333445566666666555444444444566778888899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHH
Q 043999 189 GDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHT-YTVLICGLFKNGLQKDGFEF 267 (574)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~ 267 (574)
|++++|+..++.+.+... ..+..|..+..++...|+.+.|.+.|.+.++.+ |+... .+.+...+-..|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999888532 256788889999999999999999998887754 44433 33445556668899999988
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 268 YEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGIS 347 (574)
Q Consensus 268 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 347 (574)
+.+.++... -=...|+.|...+-..|++..|+..|++..+..+. -...|-.|...|...+.+++|...|.+..... +
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 888887531 23457888888888899999999999988877544 45678888888989999999999998887653 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 043999 348 PNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPS-VVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTIL 426 (574)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 426 (574)
.....+..+...|...|.+|-|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.+.+...... ......+.|
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NL 360 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNL 360 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHH
Confidence 34567777888888899999999999998876 344 57789999999999999999999998887632 245667888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 043999 427 IDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN-DVVYNMMIFGYCKEGN 505 (574)
Q Consensus 427 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 505 (574)
...+...|.+++|..+|....+.. +.-....+.|...|-+.|++++|+..+++.++ ++|+ ...|+.+...|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 889999999999999998887752 22345778888889999999999999999887 4665 5678889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043999 506 SYRALRLLGEMNEKGLVPNI-ASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSV 560 (574)
Q Consensus 506 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 560 (574)
.+.|++.+.+... +.|.- ..++.+...+...|++.+|++-+++.++. +||.
T Consensus 438 v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDf 489 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDF 489 (966)
T ss_pred HHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCC
Confidence 9999999988887 45653 66778888888899999999999998854 7775
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.9e-19 Score=191.49 Aligned_cols=509 Identities=11% Similarity=0.039 Sum_probs=319.2
Q ss_pred ccCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHH--------
Q 043999 21 AKLPPLKAFSLFNWASRQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHL-------- 92 (574)
Q Consensus 21 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------- 92 (574)
.+.+..+|+..|+.+.+.. +-++.++..+.+.+.. .++.++|...+.+.+.... .+ .....++..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~---~g~~~~A~~~~~kAv~ldP-~n-~~~~~~La~i~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRH---FGHDDRARLLLEDQLKRHP-GD-ARLERSLAAIPVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCc-cc-HHHHHHHHHhccChhHHH
Confidence 3578889999999998764 2346678888888888 9999999999998876543 11 1111111111
Q ss_pred --HhhCCCCCCCCcchhHHHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHH
Q 043999 93 --TQLFPSSSNPVTKSRLYESIIDA--------HLKSRLSDQALFYFHQMLDSGVRPRSNTFNSL-LIFVIKSCSFDKGW 161 (574)
Q Consensus 93 --~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l-l~~~~~~g~~~~A~ 161 (574)
.+.. ...|.+..++..+... |.+.++..++++ .......|+..+.... ...|.+.|++++|+
T Consensus 130 ~ye~l~---~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 130 TVEELL---AQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHH---HhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 1110 1123344555555554 666655455554 2222223445544444 78888888888888
Q ss_pred HHHHHcccCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043999 162 LFFSENRCKVELDVYSFGILIKGCCE-AGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELG 240 (574)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 240 (574)
..+.++.+..+.+......|...|.+ .++ +++..+++.. ++.+...+..++..|.+.|+.++|.++++++....
T Consensus 203 ~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 203 TLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 88888887766677777777778877 366 7777775532 23577788888888888888888888888875443
Q ss_pred CC-CChhhHHHH------------------------------HHHHHhcCCHHHHHHHH---------------------
Q 043999 241 LV-ATQHTYTVL------------------------------ICGLFKNGLQKDGFEFY--------------------- 268 (574)
Q Consensus 241 ~~-~~~~~~~~l------------------------------i~~~~~~g~~~~a~~~~--------------------- 268 (574)
.. |...+|--+ +..+.++++++-+.++.
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 22 333333221 22223333333222221
Q ss_pred --------HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------------------------------
Q 043999 269 --------EKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR------------------------------- 309 (574)
Q Consensus 269 --------~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------- 309 (574)
+.|.+.. +-+.....-+.-...+.|+.++|.++|+.....
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 0011000 000000011111122334444444443333220
Q ss_pred --------------------------------C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 043999 310 --------------------------------E-VAC--NVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYN 354 (574)
Q Consensus 310 --------------------------------~-~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~ 354 (574)
+ .++ +...|..+..++.. ++.++|...+.+.... .|+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHH
Confidence 0 012 34555555555554 6777777777766654 35544333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 043999 355 KLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSD 434 (574)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 434 (574)
.+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...+++..+.. +.+...+..+.......|
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCC
Confidence 3444556788888888888887654 3444556666777888888888888888888764 223333333344445668
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 435 DMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLG 514 (574)
Q Consensus 435 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 514 (574)
++++|...+++..+. .|+...+..+...+.+.|+.++|+..+++.+...+. +...++.+...+...|++++|++.++
T Consensus 591 r~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 591 QPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 899999998888875 466778888888888999999999999988886433 56778888888888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043999 515 EMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSV 560 (574)
Q Consensus 515 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 560 (574)
+..+.. +-+...+..+..++...|++++|...+++.++. .|+.
T Consensus 668 ~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 668 RAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 888852 335677888888888999999999999998865 5654
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.6e-21 Score=184.41 Aligned_cols=405 Identities=14% Similarity=0.136 Sum_probs=302.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhH
Q 043999 114 DAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNK 193 (574)
Q Consensus 114 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 193 (574)
..+.+..+.+.....-...++.. +--..+|..+...+-..|++++|+.+++.+.+..+..+..|..+..++...|+.+.
T Consensus 90 ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~ 168 (966)
T KOG4626|consen 90 AIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLEL 168 (966)
T ss_pred hhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcc
Confidence 44555555555555444444432 23466777777888888888888888888777667777888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 194 AFEVLNQLEEMGFSPNVVIY-TSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQ 272 (574)
Q Consensus 194 A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 272 (574)
|.+.|.+.++. .|+.... +.+...+-..|++++|..-|.+..+..+. -...|+.|...+-.+|+...|+..|++..
T Consensus 169 a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 169 AVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred cHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 88888887764 4555443 33445555678888888888877765432 45678888888888888888888888887
Q ss_pred HCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 043999 273 LNGVSPS-LYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVI 351 (574)
Q Consensus 273 ~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 351 (574)
+. .|+ ...|..|...|...+.+++|...+.+.....+. ..+.+..+...|..+|..+-|+..|++.++.. +.=..
T Consensus 246 kl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~ 321 (966)
T KOG4626|consen 246 KL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPD 321 (966)
T ss_pred cC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchH
Confidence 65 343 457778888888888888888888887765443 56777778888888888888888888888753 22356
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH
Q 043999 352 TYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPS-EVTYTILIDSF 430 (574)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 430 (574)
.|+.|.+++-..|++.+|...|.+..... +.-..+.+.|...+...|.+++|..+|....+- .|. ....+.|...|
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIY 398 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHH
Confidence 78888888888888888888888887762 224567778888888888899988888888765 333 35677888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 043999 431 VRSDDMEKAFEMYSLMQKSGFSPD-VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN-DVVYNMMIFGYCKEGNSYR 508 (574)
Q Consensus 431 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 508 (574)
-++|++++|...|++.++. .|+ ...|+.+...|-..|+++.|.+.+.+++.. .|. ...++.|...|-..|+..+
T Consensus 399 kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHH
Confidence 8999999999999888875 455 467888888899999999999999988875 443 5678888999999999999
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 043999 509 ALRLLGEMNEKGLVPNI-ASYSSTIGVL 535 (574)
Q Consensus 509 A~~~~~~m~~~g~~p~~-~~~~~l~~~~ 535 (574)
|++-+++.++ ++||. ..|..++.++
T Consensus 475 AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 9999999888 56764 4454455443
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=7.1e-22 Score=196.29 Aligned_cols=303 Identities=15% Similarity=0.095 Sum_probs=143.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCC
Q 043999 219 GCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPS---LYTYNCLIHEYCNEGK 295 (574)
Q Consensus 219 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~---~~~~~~li~~~~~~g~ 295 (574)
.+...|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344556666666666666554322 344555555566666666666666665554321111 1234455555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 296 VSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQ 375 (574)
Q Consensus 296 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 375 (574)
+++|..+|+++.+... .+..+++.++..+.+.|++++|...++.+.+.+..++...
T Consensus 123 ~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 5555555555554322 2444555555555555555555555555554332111100
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043999 376 LKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDV 455 (574)
Q Consensus 376 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 455 (574)
....+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+.....
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 00112233334444444444444444444332 112333444444445555555555555554443211112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 456 YTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVL 535 (574)
Q Consensus 456 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 535 (574)
.+++.++.+|.+.|++++|.+.++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 33444555555555555555555555443 233333444555555555555555555555442 34544555444444
Q ss_pred Hh---cCCHHHHHHHHHHHHHcCCCCC
Q 043999 536 CQ---DGKWPEAEVLLNQMLKLGLKPS 559 (574)
Q Consensus 536 ~~---~g~~~~A~~~~~~m~~~g~~p~ 559 (574)
+. .|+.+++..++++|.++++.|+
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCC
Confidence 43 2345555555555554444443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=7.4e-20 Score=191.36 Aligned_cols=432 Identities=12% Similarity=-0.019 Sum_probs=258.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCC 186 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 186 (574)
..+......|.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..++......|.+..+|..+..+|.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34667889999999999999999999875 5778888889999999999999999999998877888899999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043999 187 EAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFE 266 (574)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 266 (574)
..|++++|+.-|......+.. +......++..+.. ..+........+... ++...+..+...+ ..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCcchh
Confidence 999999999988776654211 11111222222211 122222222222221 1222333222221 1111111111
Q ss_pred HHHHHHHCCCCCCH-hhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 267 FYEKMQLNGVSPSL-YTYNCLIHE---YCNEGKVSEGFKLFDEMRHRE-V-ACNVVTYNTLICGLCKEMRVQEAERLLDQ 340 (574)
Q Consensus 267 ~~~~~~~~g~~p~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 340 (574)
-+....+ ..++. ..+..+... ....+++++|.+.|+...+.+ . +.....|+.+...+...|++++|+..++.
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 01110 011111110 012356677777777766543 1 12345566666666677777777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043999 341 MKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSE 420 (574)
Q Consensus 341 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 420 (574)
.++.. +.+...|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..+.. +.+.
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 66542 2234456666666777777777777777766653 2245666666777777777777777777776653 2244
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHH
Q 043999 421 VTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDV------VYN 494 (574)
Q Consensus 421 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~ 494 (574)
..+..+...+.+.|++++|...|+...+.. +.+...++.+...+...|++++|++.|++.+......+.. .++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 555666666777777777777777766542 3445666667777777777777777777766542221111 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 495 MMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 495 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
..+..+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|.++|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22222333567777777777766642 223345666677777777777777777776644
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.4e-20 Score=183.23 Aligned_cols=529 Identities=13% Similarity=0.085 Sum_probs=385.0
Q ss_pred HhccCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHH------
Q 043999 19 RMAKLPPLKAFSLFNWASRQ--GLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLC------ 90 (574)
Q Consensus 19 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------ 90 (574)
.+++.+...|+.+|..+... ...|++.. .+-+++.. .++...|...+.+.+.-.. ...++++.
T Consensus 174 ~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~k---l~~~~~a~~a~~ralqLdp----~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 174 AYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWK---LGMSEKALLAFERALQLDP----TCVSALVALGEVDL 244 (1018)
T ss_pred HhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHh---ccchhhHHHHHHHHHhcCh----hhHHHHHHHHHHHH
Confidence 44667777777777775542 34455432 22244445 5555665555555443211 11111111
Q ss_pred -------------HHHhhCCCCCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 043999 91 -------------HLTQLFPSSSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVR--PRSNTFNSLLIFVIKSC 155 (574)
Q Consensus 91 -------------~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~ll~~~~~~g 155 (574)
.+.+.+. ..+.|+++.+.|.+.|.-.|+++.+..+...+...... .-..+|-.+..++...|
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~---~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYK---ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HccchHHHHHHHHHHHHHHh---hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 1111111 13467889999999999999999999999999875321 12345777889999999
Q ss_pred ChhHHHHHHHHcccCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----CHHHHH
Q 043999 156 SFDKGWLFFSENRCKVELD-VYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNG----DIERAK 230 (574)
Q Consensus 156 ~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~ 230 (574)
++++|.+.|.+.....+.+ +..+--+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|.
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 9999999999887764545 6677888999999999999999999998863 335567777777777775 567888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 231 MLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQ----LNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEM 306 (574)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 306 (574)
.++.+..+..+. |...|-.+...+....-+.. +.+|.... ..+-.+.+...|.+...+...|++++|...|...
T Consensus 401 ~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 401 NVLGKVLEQTPV-DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHhcccc-cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 888888776543 78889888888776655544 77765544 4555678889999999999999999999999988
Q ss_pred HhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 307 RHR---EVACNV------VTYNTLICGLCKEMRVQEAERLLDQMKMAGISPN-VITYNKLIDGFCDAGETDKAFRLFNQL 376 (574)
Q Consensus 307 ~~~---~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 376 (574)
... ...+|. .+-..+...+-..++.+.|.+.|..+.+. .|+ +..|-.++.+.-..+...+|...+...
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence 765 222232 23344566666788999999999999886 344 334444443444457888999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHh------------cCCHHHHHHHH
Q 043999 377 KSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEER-GITPSEVTYTILIDSFVR------------SDDMEKAFEMY 443 (574)
Q Consensus 377 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~ 443 (574)
...+ ..++..++.+...+.+...+..|.+-|+...+. ...+|..+..+|.+.|.+ .+..++|+++|
T Consensus 557 l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 557 LNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred Hhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 7753 447777888888899988998888877766543 223677777777776543 34578999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 043999 444 SLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEK-GLV 522 (574)
Q Consensus 444 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 522 (574)
.++++.. +.+.+.-|-+.-.++..|++.+|..+|.++.+... -...+|-.+.++|..+|++-.|++.|+...++ +..
T Consensus 636 ~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~ 713 (1018)
T KOG2002|consen 636 GKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK 713 (1018)
T ss_pred HHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999875 67788888888899999999999999999998643 25678999999999999999999999998765 334
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043999 523 PNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILY 567 (574)
Q Consensus 523 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 567 (574)
.+..+...|..++.+.|++.+|.+.+...+.....-..+.+|..+
T Consensus 714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 467788899999999999999999999988764333444555443
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=9.7e-22 Score=195.33 Aligned_cols=298 Identities=15% Similarity=0.111 Sum_probs=139.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCC----CHHHHHHHHHHHHhc
Q 043999 113 IDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVEL----DVYSFGILIKGCCEA 188 (574)
Q Consensus 113 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~li~~~~~~ 188 (574)
...+...|++++|+..|+++++.+ +.+..++..+...+...|++++|...++.+...... ...++..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344456666666666666666653 223445555666666666666666666655543111 123455555666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHH
Q 043999 189 GDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQ----HTYTVLICGLFKNGLQKDG 264 (574)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a 264 (574)
|++++|.++|+++.+.. +++..++..++..+.+.|++++|.+.++++.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 66666666666655432 224455555556666666666666666555544322211 1223334444444555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 265 FEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMA 344 (574)
Q Consensus 265 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 344 (574)
...|+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.++.....+++.++.+|.+.|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555444332 11233344444444444444444444444443322212233444444444444444444444444433
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCC
Q 043999 345 GISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSK---AGNSKMASDLVREMEERGIT 417 (574)
Q Consensus 345 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~ 417 (574)
.|+...+..++..+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 223333344444444444444444444444332 2344444444433332 22444444444444443333
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=4.1e-19 Score=185.80 Aligned_cols=416 Identities=11% Similarity=0.002 Sum_probs=290.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043999 143 TFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCK 222 (574)
Q Consensus 143 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 222 (574)
.+......+.+.|++++|++.|++.... .|+...|..+..+|.+.|++++|++.+++.++.. +.+...+..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~-~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3455677888999999999999998765 4577889999999999999999999999998864 2256688889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043999 223 NGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKL 302 (574)
Q Consensus 223 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 302 (574)
.|++++|+..|......+...+.. ...++..+.. ..+........+.. +++...+..+.. |...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 999999999887765543221221 1122211111 22233333333321 222233333322 2222222222211
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 303 FDEMRHREVACNVVTYNTLICG---LCKEMRVQEAERLLDQMKMAG-I-SPNVITYNKLIDGFCDAGETDKAFRLFNQLK 377 (574)
Q Consensus 303 ~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 377 (574)
+....+.... ....+..+... ....+++++|...|+...+.+ . +.+...+..+...+...|++++|...+++..
T Consensus 280 ~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 280 LEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2211111100 01111111111 123578999999999998865 2 3345678888889999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043999 378 SNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYT 457 (574)
Q Consensus 378 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 457 (574)
+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~ 435 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS 435 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence 863 2246688888999999999999999999998874 3367888999999999999999999999999875 556778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHH
Q 043999 458 YGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIA------SYSST 531 (574)
Q Consensus 458 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~l 531 (574)
+..+...+.+.|++++|+..+++.++..+. +...|+.+...+...|++++|++.|++..+.....+.. .++..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 888999999999999999999999875322 57889999999999999999999999998852111111 12222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHhhhhcCC
Q 043999 532 IGVLCQDGKWPEAEVLLNQMLKLGLKPSVS-LYNILYRAKNNIE 574 (574)
Q Consensus 532 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~ 574 (574)
+..+...|++++|..++++.++. .|+.. .+..+...|...|
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQG 556 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcc
Confidence 33344579999999999999865 56554 6777777776554
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=3.7e-18 Score=181.79 Aligned_cols=211 Identities=14% Similarity=0.054 Sum_probs=147.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 043999 352 TYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFV 431 (574)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 431 (574)
.|..+..++.. +++++|...+.+.... .|+......+...+...|++++|...++++... .|+...+..+...+.
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all 553 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH
Confidence 33444444443 5566677766666554 355443333444456788888888888887554 344455666677788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 432 RSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALR 511 (574)
Q Consensus 432 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 511 (574)
+.|+.++|...++...+.. +++...+..+...+...|++++|...+++.++. .|+...|..+..++.+.|++++|+.
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888887764 333334444444455669999999999998875 4677888888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHhhhhcC
Q 043999 512 LLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSV-SLYNILYRAKNNI 573 (574)
Q Consensus 512 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 573 (574)
.+++..+.. +.+...+..+..++...|++++|+..+++.++. .|+. ..+..+-.+|..+
T Consensus 631 ~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 631 DLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 999998852 335567778888899999999999999999875 5654 4566665555544
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=5.3e-19 Score=184.23 Aligned_cols=360 Identities=11% Similarity=0.033 Sum_probs=261.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhH
Q 043999 116 HLKSRLSDQALFYFHQMLDSGV--RPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNK 193 (574)
Q Consensus 116 ~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 193 (574)
+.++.+++.---+|....+..- .-+..-...++..+.+.|++++|+.+++......+.+...+..++......|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 3456677766666655433210 01222334456667788899999988888888777778888888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 194 AFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQL 273 (574)
Q Consensus 194 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 273 (574)
|.+.++++.+.. +.+...+..+...+.+.|++++|...+++..+..+. +...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999998888753 235567788888888889999999888888776433 566788888888888888888888888766
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 043999 274 NGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITY 353 (574)
Q Consensus 274 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 353 (574)
.... +...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|+..++++.+.. +.+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 5322 22333333 3477788888888888888776544455555566677888888888888888888764 4456677
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 043999 354 NKLIDGFCDAGETDK----AFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDS 429 (574)
Q Consensus 354 ~~li~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 429 (574)
..+...+...|++++ |...|+++.+.. +.+...+..+...+.+.|++++|...+++..+... .+...+..+...
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 778888888888875 788888887763 23567788888888888888888888888887632 245566677778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 430 FVRSDDMEKAFEMYSLMQKSGFSPDV-YTYGVLIHGLCMKGNMKEASKLFNSMWET 484 (574)
Q Consensus 430 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 484 (574)
+.+.|++++|...++.+.+.. |+. ..+..+..++...|+.++|...|++..+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888888888888887653 433 33444566778888888888888888775
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=3.1e-19 Score=185.90 Aligned_cols=354 Identities=11% Similarity=0.036 Sum_probs=289.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhc
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEA 188 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 188 (574)
....+..+.+.|++++|+.+++..+... +-+...+..++.+....|++++|...|+++....|.+...+..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 4567788889999999999999998874 334556666778888899999999999999988888999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 043999 189 GDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFY 268 (574)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 268 (574)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++....+. +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999999853 235678889999999999999999999998776544 33344333 3478899999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHC
Q 043999 269 EKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQE----AERLLDQMKMA 344 (574)
Q Consensus 269 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~ 344 (574)
+.+.+....++...+..+...+.+.|++++|...++++.+..+. +...+..+...+.+.|++++ |...|+++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 99887643345555566678899999999999999999987655 78888899999999999986 89999999886
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-hHH
Q 043999 345 GISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSE-VTY 423 (574)
Q Consensus 345 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~ 423 (574)
. +.+...+..+...+.+.|++++|...+++..+... .+...+..+...+.+.|++++|...++++.+.+ |+. ..+
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 4 45677889999999999999999999999998743 356677788899999999999999999998763 443 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 424 TILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWET 484 (574)
Q Consensus 424 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 484 (574)
..+..++...|+.++|...|++..+. .|+.. ...+++|...+.+..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------hhhHHHHHHHHHHHHHh
Confidence 44567789999999999999999876 34432 24455677667666654
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=9.7e-19 Score=186.21 Aligned_cols=420 Identities=11% Similarity=0.053 Sum_probs=218.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG 184 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 184 (574)
++..-.-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++.....|.+...+..++..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33334455566667778888887777776532 33455567777777777788888777777766666667777777777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043999 185 CCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDG 264 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 264 (574)
+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...|..++|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHH
Confidence 777777777777777777652 22444 667777777777777777777777776543 455555666677777777777
Q ss_pred HHHHHHHHHCCCCCCH------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHHH
Q 043999 265 FEFYEKMQLNGVSPSL------YTYNCLIHEYC-----NEGKV---SEGFKLFDEMRHR-EVACNVV-TYN----TLICG 324 (574)
Q Consensus 265 ~~~~~~~~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~~-~~~----~li~~ 324 (574)
+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 777765543 2221 01111111111 11112 3444444444432 1111110 010 01222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCC
Q 043999 325 LCKEMRVQEAERLLDQMKMAGIS-PNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSP---SVVTYNVLIRAFSKAGN 400 (574)
Q Consensus 325 ~~~~~~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~ 400 (574)
+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++.+..... .......+..++.+.|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 33444555555555555444311 111 11112344445555555555555544321110 01223333334444555
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 043999 401 SKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPD---VYTYGVLIHGLCMKGNMKEASKL 477 (574)
Q Consensus 401 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 477 (574)
+++|..+++++.+... ++...+. ...-.|+ ...+..+...+...|+.++|++.
T Consensus 326 ~~eA~~~l~~~~~~~P-~~~~~~~-----------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 326 YPGALTVTAHTINNSP-PFLRLYG-----------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred HHHHHHHHHHHhhcCC-ceEeecC-----------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555554443310 0000000 0000112 12333445555566666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043999 478 FNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN-IASYSSTIGVLCQDGKWPEAEVLLNQMLKLGL 556 (574)
Q Consensus 478 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 556 (574)
++++....+. +...+..+...+...|++++|++.+++..+. .|+ ...+...+..+.+.|++++|..+++++++.
T Consensus 382 l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~-- 456 (765)
T PRK10049 382 ARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR-- 456 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Confidence 6666554322 4555666666666666666666666666653 233 344445555566666666666666666643
Q ss_pred CCCHH
Q 043999 557 KPSVS 561 (574)
Q Consensus 557 ~p~~~ 561 (574)
.|+..
T Consensus 457 ~Pd~~ 461 (765)
T PRK10049 457 EPQDP 461 (765)
T ss_pred CCCCH
Confidence 44443
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.6e-18 Score=169.11 Aligned_cols=442 Identities=12% Similarity=0.065 Sum_probs=337.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRS--NTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
..+|-.+.++|...|++++|...|.+..+.. |+. ..+-.|.+.+.+.|+.+++...|+.+....|.+..+..+|..
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 4568899999999999999999999998864 444 444557788999999999999999999998999999999999
Q ss_pred HHHhcC----ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChhhHHHHHHHH
Q 043999 184 GCCEAG----DLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIG----ELGLVATQHTYTVLICGL 255 (574)
Q Consensus 184 ~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~ 255 (574)
.|...+ ..+.|..++.+..+.- +.|...|-.+...+-.. +...++..|.... ..+-.+.+...|.+...+
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 998876 5677777777777653 34667787777777554 4444477776543 445457788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHC---CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 256 FKNGLQKDGFEFYEKMQLN---GVSPSL------YTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLC 326 (574)
Q Consensus 256 ~~~g~~~~a~~~~~~~~~~---g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 326 (574)
...|.+++|...|...... ...+|. .+-..+...+-..++.+.|.+.|..+.+..+. -+..|-.+.....
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMAR 541 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHH
Confidence 9999999999999988765 223333 33445667777788999999999999987443 4445555554444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh--------
Q 043999 327 KEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNG-QSPSVVTYNVLIRAFSK-------- 397 (574)
Q Consensus 327 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~-------- 397 (574)
..+...+|...+....... ..++..++.+.+.+.+...+..|.+-|+.+.+.- ..+|..+.-.|.+.|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred hccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 5678889999999988764 4566677778889999999999998777776542 22566666666665543
Q ss_pred ----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043999 398 ----AGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKE 473 (574)
Q Consensus 398 ----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 473 (574)
.+..++|+++|.+.++... .|...-+.+.-.++..|++.+|..+|.++.+.. .....+|-.+.++|..+|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHH
Confidence 2456789999999888743 377888888889999999999999999999875 3455678889999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------------
Q 043999 474 ASKLFNSMWET-KLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGV------------------ 534 (574)
Q Consensus 474 A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~------------------ 534 (574)
|+++|+...+. ...-+..+...|..++.+.|++.+|.+.+.............-||..+-.
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev 778 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEV 778 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHH
Confidence 99999998876 33446788999999999999999999999988885322223444443321
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 043999 535 LCQDGKWPEAEVLLNQMLKLG 555 (574)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~g 555 (574)
....+..++|.++|.+|...+
T Consensus 779 ~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 779 LEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 122356788999999998654
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.2e-18 Score=185.41 Aligned_cols=383 Identities=10% Similarity=0.010 Sum_probs=251.0
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILI 182 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 182 (574)
+.+...+..+...+.+.|++++|.++|++.++.. +.+...+..+...+...|++++|+..++++....|.+.. +..+.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 4556779999999999999999999999998863 445677778888999999999999999999988788888 99999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHH
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQ------HTYTVLICGLF 256 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~ 256 (574)
..+...|+.++|+..++++.+... .+...+..+...+...|..++|++.+++... .|+. .....++....
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~ 199 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSF 199 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998643 2556667788888899999999999987664 1221 11222222222
Q ss_pred -----hcCCH---HHHHHHHHHHHHC-CCCCCHh-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 043999 257 -----KNGLQ---KDGFEFYEKMQLN-GVSPSLY-TYN----CLIHEYCNEGKVSEGFKLFDEMRHREVA-CNVVTYNTL 321 (574)
Q Consensus 257 -----~~g~~---~~a~~~~~~~~~~-g~~p~~~-~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l 321 (574)
..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~l 278 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWV 278 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHH
Confidence 22334 7788899988854 2233322 111 1134566789999999999999887643 322 22235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043999 322 ICGLCKEMRVQEAERLLDQMKMAGISP---NVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKA 398 (574)
Q Consensus 322 i~~~~~~~~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 398 (574)
...|...|++++|+..|+++.+..... .......+..++...|++++|.++++.+.+... +....+.
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P-~~~~~~~--------- 348 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP-PFLRLYG--------- 348 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC-ceEeecC---------
Confidence 778999999999999999987653111 123456677788999999999999999987521 1110000
Q ss_pred CChHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043999 399 GNSKMASDLVREMEERGITPSE---VTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEAS 475 (574)
Q Consensus 399 g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 475 (574)
... ..|+. ..+..+...+...|+.++|.++++++.... +.+...+..+...+...|+.++|+
T Consensus 349 ------------~~~--~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 349 ------------SPT--SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred ------------CCC--CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 000 01221 122333344444555555555555544432 333444455555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 476 KLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 476 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
+.+++++...+. +...+...+..+...|++++|..+++++++
T Consensus 414 ~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 414 NELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555543211 233344444445555555555555555555
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=1.5e-16 Score=166.18 Aligned_cols=444 Identities=11% Similarity=0.082 Sum_probs=327.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRS-NTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
..|...|.. .+.|+++.|++.|++.++.. |+. .....++..+...|+.++|+..+++.....+........++..+
T Consensus 36 ~~y~~aii~-~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 36 TQYDSLIIR-ARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHH-HhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 445555544 59999999999999999864 443 22338888888999999999999999844455556666667899
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGF 265 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (574)
...|++++|+++++++.+.... +...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHH
Confidence 9999999999999999987533 46777788899999999999999999998764 45555555555555567776799
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHHHH-----HhcCCH---
Q 043999 266 EFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTY------NTLICGL-----CKEMRV--- 331 (574)
Q Consensus 266 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~li~~~-----~~~~~~--- 331 (574)
+.++++.+.. +-+...+..+...+.+.|-...|.++..+-... ..+...-+ ..++..- ....++
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999874 336777888899999999999988777653321 11111001 1111100 012233
Q ss_pred HHHHHHHHHHHHC-C-CCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043999 332 QEAERLLDQMKMA-G-ISPNVITY----NKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMAS 405 (574)
Q Consensus 332 ~~A~~~~~~m~~~-g-~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 405 (574)
+.|+.-++.+... + .++....| --.+-++...|+..++++.|+.+...+.+....+-..+.++|...+++++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 4455555555542 1 12222222 2334577789999999999999998876655567788999999999999999
Q ss_pred HHHHHHHHCC-----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHH
Q 043999 406 DLVREMEERG-----ITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGF-----------SP--DV-YTYGVLIHGLC 466 (574)
Q Consensus 406 ~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~--~~-~~~~~li~~~~ 466 (574)
.+++++.... ..++......|.-++...+++++|..+++.+.+... .| |- ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999997643 122344457888999999999999999999987311 12 22 23445677788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 043999 467 MKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVP-NIASYSSTIGVLCQDGKWPEAE 545 (574)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 545 (574)
..|++.+|++.++++....+. |......+...+...|++.+|.+.++..... .| +..+....+.++...|++.+|.
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999887544 8899999999999999999999999777664 44 4567778888889999999999
Q ss_pred HHHHHHHHcCCCCCHHHH
Q 043999 546 VLLNQMLKLGLKPSVSLY 563 (574)
Q Consensus 546 ~~~~~m~~~g~~p~~~~~ 563 (574)
.+.+.+.+. .|+...-
T Consensus 505 ~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 505 LLTDDVISR--SPEDIPS 520 (822)
T ss_pred HHHHHHHhh--CCCchhH
Confidence 999999865 6665543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=4.8e-16 Score=162.50 Aligned_cols=435 Identities=11% Similarity=0.045 Sum_probs=323.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 043999 60 SHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRP 139 (574)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 139 (574)
.|++..|...+.+.++.. |...+.++ .++..+...|+.++|+..+++..... +.
T Consensus 47 ~Gd~~~Al~~L~qaL~~~------------------------P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~ 100 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAG------------------------PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NI 100 (822)
T ss_pred CCCHHHHHHHHHHHHhhC------------------------ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CC
Confidence 788888888888776432 11112334 88888889999999999999998321 22
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043999 140 RSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDG 219 (574)
Q Consensus 140 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 219 (574)
.......+...+...|++++|+++|+++....|.+...+..++..+.+.++.++|++.++++... .|+...+..++..
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL 178 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYL 178 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHH
Confidence 23333334567888899999999999999988888899999999999999999999999999875 4666666556555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH------HHHHHHH---
Q 043999 220 CCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTY------NCLIHEY--- 290 (574)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~------~~li~~~--- 290 (574)
+...++..+|++.++++.+.++. +...+..+...+.+.|-...|.++..+-... +.+...-+ ...++.-
T Consensus 179 ~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~ 256 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLP 256 (822)
T ss_pred HHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccc
Confidence 65577777799999999998644 6778888999999999999998877653311 11111111 1111110
Q ss_pred --HhcCC---HHHHHHHHHHHHhC-CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 043999 291 --CNEGK---VSEGFKLFDEMRHR-EVACNV-VTY----NTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDG 359 (574)
Q Consensus 291 --~~~g~---~~~A~~~~~~m~~~-~~~~~~-~~~----~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 359 (574)
....+ .+.|+.-++.+... +..|.. ..| --.+.++...+++.++++.|+.+...|.+....+-..+.++
T Consensus 257 ~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 257 TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 01122 34455556665542 222221 222 23456778899999999999999998876566688899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------------CCCHh
Q 043999 360 FCDAGETDKAFRLFNQLKSNG-----QSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGI-------------TPSEV 421 (574)
Q Consensus 360 ~~~~g~~~~A~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~ 421 (574)
|...+++++|..++..+.... ..++......|..++...+++++|..+++++.+... .||-.
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 999999999999999997643 123444467889999999999999999999987411 12222
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043999 422 -TYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGY 500 (574)
Q Consensus 422 -~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 500 (574)
.+..++..+...|++.+|.+.++.+.... |-|......+.+.+...|...+|++.++.+....+. +..+....+.++
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~a 494 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHH
Confidence 23456677889999999999999998775 788899999999999999999999999877665322 566777888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043999 501 CKEGNSYRALRLLGEMNEKGLVPNIASY 528 (574)
Q Consensus 501 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 528 (574)
...|++++|..+.+.+.+. .|+....
T Consensus 495 l~l~e~~~A~~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 495 MALQEWHQMELLTDDVISR--SPEDIPS 520 (822)
T ss_pred HhhhhHHHHHHHHHHHHhh--CCCchhH
Confidence 9999999999999999985 5655433
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.2e-14 Score=132.71 Aligned_cols=430 Identities=14% Similarity=0.191 Sum_probs=246.4
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--Chh-HHHHHHHHcccCCCCCHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSC--SFD-KGWLFFSENRCKVELDVYSFGI 180 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g--~~~-~A~~~~~~~~~~~~~~~~~~~~ 180 (574)
..+++=|.|+.. ..+|...++.-+|++|...|++.+...-..|+...+-.+ ++- .-++.|-.|......+..+|
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW-- 190 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW-- 190 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--
Confidence 345667777775 468899999999999999998877776666665433222 222 23455555554433333333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 043999 181 LIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGL 260 (574)
Q Consensus 181 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 260 (574)
+.|++.+ -+|+.. +.+..++..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-
T Consensus 191 ------K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--- 254 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--- 254 (625)
T ss_pred ------ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh---
Confidence 2343332 222221 235566777777777777777777777766655555666677776654322
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 043999 261 QKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEG----FKLFDEMRHREVACNVVTYNTLICGLCKEMRVQE-AE 335 (574)
Q Consensus 261 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-A~ 335 (574)
....+++.+|....+.||..|+|+++.+..+.|+++.| .+++.+|++.|++|...+|..+|..+++.++..+ |.
T Consensus 255 -~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 255 -SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred -hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 12256666777666677777777777777777766543 4556666777777777777777777766665532 44
Q ss_pred HHHHHHHHC----CC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCC
Q 043999 336 RLLDQMKMA----GI----SPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNG----QSPS---VVTYNVLIRAFSKAGN 400 (574)
Q Consensus 336 ~~~~~m~~~----g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~ 400 (574)
.++.++... .+ +.|...|..-++.|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 444443321 11 2233445555666666666666666554443220 1122 1224455556666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C--------H
Q 043999 401 SKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKG-N--------M 471 (574)
Q Consensus 401 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--------~ 471 (574)
.+.-...|+.|.-.-..|+..+...++.+..-.++++-.-++|..+...|..-.......++..+++.. . +
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 777777777776555566666666667766667777777777766666654444444444444444332 0 0
Q ss_pred HH-----HHHHHH-------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHH---HHHHHH
Q 043999 472 KE-----ASKLFN-------SMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGL-VPNIASYS---STIGVL 535 (574)
Q Consensus 472 ~~-----A~~~~~-------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~---~l~~~~ 535 (574)
.. |..+++ ++.. ..-.....+...-.+.+.|+.++|.+++.....++- .|-....+ .+.+.-
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 00 111111 1122 222344556666667788888888888877755432 22222333 444555
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 043999 536 CQDGKWPEAEVLLNQMLKLG 555 (574)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~g 555 (574)
.+......|...++-|.+.+
T Consensus 572 ~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HhcCCHHHHHHHHHHHHHcC
Confidence 66677777777777776543
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=9.8e-17 Score=146.97 Aligned_cols=457 Identities=14% Similarity=0.142 Sum_probs=313.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHcccCCCC-----CHHHHHHH
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFN-SLLIFVIKSCSFDKGWLFFSENRCKVEL-----DVYSFGIL 181 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l 181 (574)
+...|..-|..+....+|+..|+-+++...-|+.-... .+...+.+...+.+|+++|+-....+|. -+...+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 34456777888888999999999988877667654432 2456788889999999999877765322 23356667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--------HHHHHH
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHT--------YTVLIC 253 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~li~ 253 (574)
...+.+.|.++.|+..|+...+. .||..+--.|+-++..-|+-++..+.|.+|......||..- -..|+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 77788999999999999998775 58888777777778888999999999999976433332221 122222
Q ss_pred HHHh---------cC--CHHHHHHHHHHHHHCCCCCCHhh-------------H--------HHHHHHHHhcCCHHHHHH
Q 043999 254 GLFK---------NG--LQKDGFEFYEKMQLNGVSPSLYT-------------Y--------NCLIHEYCNEGKVSEGFK 301 (574)
Q Consensus 254 ~~~~---------~g--~~~~a~~~~~~~~~~g~~p~~~~-------------~--------~~li~~~~~~g~~~~A~~ 301 (574)
--.+ .+ +.++++-.-.+++.--+.||-.. + ..-...|.++|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2111 11 12222222222222222333110 0 111245788999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH-Hh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 302 LFDEMRHREVACNVVTYNTLICGL-CK-EMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSN 379 (574)
Q Consensus 302 ~~~~m~~~~~~~~~~~~~~li~~~-~~-~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 379 (574)
+++-..++.-+.-...-+.|-..+ .+ -.++.+|.++-+...... .-+......-.+.....|++++|.+.|++....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 999888774332222333332222 22 345777777777666442 334444444444555678999999999998865
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043999 380 GQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYG 459 (574)
Q Consensus 380 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 459 (574)
+-.-....|| +.-.+-..|+.++|++.|-++... +..+..+...+.+.|....+...|.+++.+.... ++.|+.+..
T Consensus 520 dasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 3221122222 233456789999999998887643 2336677778888888889999999998877665 577888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 043999 460 VLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGV-LCQD 538 (574)
Q Consensus 460 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~ 538 (574)
.|...|-+.|+-.+|.+.+-+--+. ++-+..+...|...|....-+++|+.+|++..- +.|+..-|..++.. +.+.
T Consensus 597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 9999999999999998887765543 344788888888888888889999999998876 78999999888754 4567
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHhhhhcCC
Q 043999 539 GKWPEAEVLLNQMLKLGLKPSVSLYNILYRAKNNIE 574 (574)
Q Consensus 539 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 574 (574)
|++..|..++++..++ +.-|..+...|++.+..||
T Consensus 674 gnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 9999999999998865 5567778888888776664
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=2.2e-12 Score=124.10 Aligned_cols=435 Identities=11% Similarity=0.082 Sum_probs=249.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC-----CCCCHHHHHHHHHHHHhcCChhHH
Q 043999 120 RLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK-----VELDVYSFGILIKGCCEAGDLNKA 194 (574)
Q Consensus 120 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A 194 (574)
.-++.|..+++...+. ++.+...|.+-...--..|+.+...++..+-... +..+...|-.=...|-..|..-.+
T Consensus 420 etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 3444444444444433 3334444444333333444444444443332111 233333444444444444444444
Q ss_pred HHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 195 FEVLNQLEEMGFSPN--VVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQ 272 (574)
Q Consensus 195 ~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 272 (574)
..+....+..|+.-. ..||+.-.+.|.+.+.++-|..+|...++--+. +...|...+..--..|..++-..+|++..
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444444444333211 234555555566666666666666666554322 45556666555556667777777777766
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 043999 273 LNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVIT 352 (574)
Q Consensus 273 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~ 352 (574)
.. ++-....|......+-..|++..|..++....+..+. +...|-.-+..-..+.+++.|..+|.+.... .|+...
T Consensus 578 ~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv 653 (913)
T KOG0495|consen 578 EQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERV 653 (913)
T ss_pred Hh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchh
Confidence 65 2334455556666666677777777777777766555 6667777777777777777777777776654 455556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 043999 353 YNKLIDGFCDAGETDKAFRLFNQLKSNGQSPS-VVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFV 431 (574)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 431 (574)
|.--++.---.+..++|.+++++..+. .|+ ...|..+.+.+-+.++.+.|...|..-.+. ++-....|..|...--
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEE 730 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHH
Confidence 655555555567777777777777665 334 345666666777777777777776655544 2334445666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 432 RSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALR 511 (574)
Q Consensus 432 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 511 (574)
+.|.+-.|..++++..-.+ +.+...|-..|.+-.+.|+.+.|..+..++++. ++-+...|..-|...-+.++-....+
T Consensus 731 k~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHH
Confidence 7777777777777776665 556677777777777788887777777776654 22244455555555444444333333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHhhhhc
Q 043999 512 LLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSV-SLYNILYRAKNN 572 (574)
Q Consensus 512 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 572 (574)
.+++. .-|+.+...+...+....++++|.++|++.++. .||. .+|..+..-+..
T Consensus 809 ALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 809 ALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELR 863 (913)
T ss_pred HHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHH
Confidence 33322 225555555666666666677777777777654 4443 355555544443
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.5e-13 Score=125.48 Aligned_cols=360 Identities=11% Similarity=0.153 Sum_probs=231.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHcccC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043999 139 PRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK-VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLI 217 (574)
Q Consensus 139 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 217 (574)
.+..|+..+|.++||--+.+.|.+++++.... .+.+..+||.+|.+-.- ....+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 35667788888888888888888888877665 67777888877765432 22367788888777888888888888
Q ss_pred HHHHhcCCHHHH----HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCCC----CHhhHH
Q 043999 218 DGCCKNGDIERA----KMLFRKIGELGLVATQHTYTVLICGLFKNGLQKD-GFEFYEKMQL----NGVSP----SLYTYN 284 (574)
Q Consensus 218 ~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~----~g~~p----~~~~~~ 284 (574)
.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++.. +.++| |...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 888888877654 4566777888888888888888888888777644 3344444432 22222 334455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 043999 285 CLIHEYCNEGKVSEGFKLFDEMRHRE----VACN---VVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLI 357 (574)
Q Consensus 285 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 357 (574)
..+..|.+..+.+-|.++..-..... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 66677777777777777766554321 2222 2345567777888888888888888888777778888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh---HHHHHHHHHHhcC
Q 043999 358 DGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEV---TYTILIDSFVRSD 434 (574)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g 434 (574)
.+..-.|.++-.-++|.+++..|..-+... -.+++..|.+....|+.. -+.....-|+ ..
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-ad 503 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCA-AD 503 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-HH
Confidence 888888888888888888776553322221 123333344333333322 2222221111 11
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C---CCCHHHHHHHHHHHHhcCCHHHHH
Q 043999 435 DMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETK-L---EPNDVVYNMMIFGYCKEGNSYRAL 510 (574)
Q Consensus 435 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~---~p~~~~~~~li~~~~~~g~~~~A~ 510 (574)
-.+.....-.++... .......+.++-.+.+.|+.++|.+++.-..+.+ - .|......-+++.-.+..+...|.
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 111122222334443 3445566777777889999999999999886543 2 233333345556666777888888
Q ss_pred HHHHHHHHCCC
Q 043999 511 RLLGEMNEKGL 521 (574)
Q Consensus 511 ~~~~~m~~~g~ 521 (574)
.+++-|...+.
T Consensus 582 ~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 582 EVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHcCc
Confidence 88888877643
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=4.9e-15 Score=135.96 Aligned_cols=421 Identities=15% Similarity=0.120 Sum_probs=290.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 043999 111 SIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNT----FNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCC 186 (574)
Q Consensus 111 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~----~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 186 (574)
.+.+.|++...+.+|+.+|+..+..-...+..+ .+.+...+.+.|+++.|+.-|+...+. .||..+-..|+-++.
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~-~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE-APNFIAALNLIICAF 320 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh-CccHHhhhhhhhhhe
Confidence 355678899999999999998887632223333 344445678999999999999987765 456665555666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC------------HHhHHHHH-----HHHHhcC--CHHHHHHHHHHHHhCCCCCChhh
Q 043999 187 EAGDLNKAFEVLNQLEEMGFSPN------------VVIYTSLI-----DGCCKNG--DIERAKMLFRKIGELGLVATQHT 247 (574)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~p~------------~~~~~~li-----~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~ 247 (574)
.-|+-++..+.|.+|+.....|| ....+.-| .-.-+.+ +.++++-.--++...-+.|+-..
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 78999999999999986432232 22222222 1222222 22333332223332222232111
Q ss_pred ---H----------HH--------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHH
Q 043999 248 ---Y----------TV--------LICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCN--EGKVSEGFKLFD 304 (574)
Q Consensus 248 ---~----------~~--------li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~g~~~~A~~~~~ 304 (574)
| .. -..-+.++|+++.|++++.-+.+..-+.-...-+.|...+.- -.++..|.+.-+
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 1 11 123467899999999999888766433333334444433333 335777777666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043999 305 EMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPS 384 (574)
Q Consensus 305 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 384 (574)
......-- +......-.......|++++|...|++.+...-.-....| .+.-.+-..|++++|+..|-++... ...+
T Consensus 481 ~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn 557 (840)
T KOG2003|consen 481 IALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNN 557 (840)
T ss_pred HHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhh
Confidence 65543111 2222222233445689999999999999876322112222 2334567889999999999877543 2236
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043999 385 VVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHG 464 (574)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 464 (574)
......+.+.|-...++.+|++++.+.... ++.|+....-|.+.|-+.|+-..|++.+-.--+. ++-+..+...|...
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ay 635 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAY 635 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHH
Confidence 777778888899999999999999887765 5668899999999999999999999988766555 57788899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043999 465 LCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGY-CKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGK 540 (574)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 540 (574)
|....-+++|+.+|++..- +.|+..-|..++..| .+.|++++|.++++....+ ++.|.....-+++.+...|.
T Consensus 636 yidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999999999999998764 589999999988655 5689999999999999887 77788888888888877774
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=1.3e-12 Score=130.57 Aligned_cols=467 Identities=13% Similarity=0.053 Sum_probs=325.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 043999 60 SHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRP 139 (574)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 139 (574)
.|++++|..++.+.++. .+.+...|-+|...|-+.|+.+++...+--..-.+ +-
T Consensus 152 rg~~eeA~~i~~EvIkq-------------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~ 205 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ-------------------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PK 205 (895)
T ss_pred hCCHHHHHHHHHHHHHh-------------------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CC
Confidence 68888888888887743 24566779999999999999999998766554432 34
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----hHHH
Q 043999 140 RSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVV----IYTS 215 (574)
Q Consensus 140 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ 215 (574)
|..-|..+.....+.|.+++|.-.|.++....|++....---+..|-+.|+...|.+.|.++.+...+.|.. ..-.
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 678899999999999999999999999998888888887778889999999999999999999864322222 2334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 043999 216 LIDGCCKNGDIERAKMLFRKIGELG-LVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPS--------------- 279 (574)
Q Consensus 216 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~--------------- 279 (574)
.++.+...++-+.|.+.++.....+ -..+...++.++..+.+...++.+......+......+|
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 5666777888899999998876622 223566788999999999999999988887766222222
Q ss_pred ------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 280 ------------LYTYNCLIHEYCNEGKVSEGFKLFDEMRHRE--VACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAG 345 (574)
Q Consensus 280 ------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 345 (574)
... .-+.-++......+....+........ +.-++..|.-+..+|...|++.+|+.+|..+....
T Consensus 366 ~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred ccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 222 112223333444444444444444444 44466788889999999999999999999998876
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------CCCC
Q 043999 346 ISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEE--------RGIT 417 (574)
Q Consensus 346 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~ 417 (574)
.-.+...|-.+..+|...|..+.|.+.|+...... +.+...--.|-..+.+.|++++|.+.+..+.. .+..
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 66677889999999999999999999999998863 22455566677788899999999999998652 2344
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043999 418 PSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSG----------------------FSPDVYTYGVLIHGLCMKGNMKEAS 475 (574)
Q Consensus 418 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~li~~~~~~g~~~~A~ 475 (574)
|+........+.+.+.|+.++-..+-..|+... .+-.......++.+-.+.++.....
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 555666666777888888887665555543211 1111222233334444444322222
Q ss_pred HHHHHH------HhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHH----HHHHHHHHHHhcCCHH
Q 043999 476 KLFNSM------WETKLEPND--VVYNMMIFGYCKEGNSYRALRLLGEMNEKGLV-PNIA----SYSSTIGVLCQDGKWP 542 (574)
Q Consensus 476 ~~~~~~------~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~----~~~~l~~~~~~~g~~~ 542 (574)
+-...- ...++..+. ..+.-++..+++.|++++|+.+...+.+.... -+.. .-...+.+.+..+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 221111 112222221 23456778889999999999999888875321 1222 2245567778899999
Q ss_pred HHHHHHHHHHHc
Q 043999 543 EAEVLLNQMLKL 554 (574)
Q Consensus 543 ~A~~~~~~m~~~ 554 (574)
.|...+..|+..
T Consensus 684 ~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 684 DAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.5e-12 Score=120.68 Aligned_cols=438 Identities=10% Similarity=0.070 Sum_probs=320.5
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILI 182 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 182 (574)
..+.-.|...+.+=.++.....|..++++.+..=+..| -.|-..+.+--..|++..|.++|++-..- .|+..+|++.|
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~w-~P~eqaW~sfI 181 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWMEW-EPDEQAWLSFI 181 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHcC-CCcHHHHHHHH
Confidence 35666788888888999999999999999887522223 33445666666789999999999886653 78999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCC
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGEL-GL-VATQHTYTVLICGLFKNGL 260 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~ 260 (574)
+.-.+-+.++.|..++++..-. .|++.+|......=-++|.+..|..+|+...+. |- ..+...+.+....-.++..
T Consensus 182 ~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE 259 (677)
T KOG1915|consen 182 KFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKE 259 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998763 589999998888888999999999999887653 11 1123344555555556777
Q ss_pred HHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043999 261 QKDGFEFYEKMQLNGVSPS--LYTYNCLIHEYCNEGKVSEGFKL--------FDEMRHREVACNVVTYNTLICGLCKEMR 330 (574)
Q Consensus 261 ~~~a~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~~~~~~~~~~li~~~~~~~~ 330 (574)
++.|.-+|.-.+.+- +.+ ...|..+...--+-|+.....+. ++.+.+.++- |-.+|-..+..-...|+
T Consensus 260 ~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~ 337 (677)
T KOG1915|consen 260 YERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGD 337 (677)
T ss_pred HHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCC
Confidence 888888888877652 222 33444444444445654433322 4455555444 77888888888888899
Q ss_pred HHHHHHHHHHHHHCCCCCChh--hHHHHH----H----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HH
Q 043999 331 VQEAERLLDQMKMAGISPNVI--TYNKLI----D----GFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRA----FS 396 (574)
Q Consensus 331 ~~~A~~~~~~m~~~g~~~~~~--~~~~li----~----~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~----~~ 396 (574)
.+...++|+.++.. ++|-.. .|...| + -=....+++.+.++|+...+. ++-...|+..+--. ..
T Consensus 338 ~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 338 KDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred HHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHH
Confidence 99999999999876 455321 122222 1 113468899999999998884 44455565554433 35
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 397 KAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASK 476 (574)
Q Consensus 397 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 476 (574)
++.+...|.+++...+ |..|...+|...|..-.+.++++.+..+|++.++.+ +.+..+|......-...|+.+.|..
T Consensus 416 Rq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 6788999999988776 457888899999999999999999999999999876 5677788888877788999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC-----------
Q 043999 477 LFNSMWETK-LEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLC-----QDG----------- 539 (574)
Q Consensus 477 ~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-----~~g----------- 539 (574)
+|.-+++.. +......|.+.|+-=...|.+++|..+++++++. .+...+|.++...-. +.|
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~ 570 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDE 570 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchh
Confidence 999988752 2223556777787778899999999999999985 445567776665433 334
Q ss_pred CHHHHHHHHHHHHH
Q 043999 540 KWPEAEVLLNQMLK 553 (574)
Q Consensus 540 ~~~~A~~~~~~m~~ 553 (574)
.+..|.++|+++..
T Consensus 571 ~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 571 NIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHHHH
Confidence 56778888888764
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.2e-12 Score=130.79 Aligned_cols=361 Identities=12% Similarity=0.050 Sum_probs=257.6
Q ss_pred hccCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCC
Q 043999 20 MAKLPPLKAFSLFNWASRQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSS 99 (574)
Q Consensus 20 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 99 (574)
+++++..+|..++....++. +.++..|..|..++-. .|+...+........
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEq---rGd~eK~l~~~llAA------------------------- 200 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQ---RGDIEKALNFWLLAA------------------------- 200 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---cccHHHHHHHHHHHH-------------------------
Confidence 36788999999999999875 3346678888888877 788887765443222
Q ss_pred CCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCH-HH-
Q 043999 100 SNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDV-YS- 177 (574)
Q Consensus 100 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~- 177 (574)
+..+.|...|..+.....+.|++++|.-.|.+.++.. +++-...-.-...|-+.|+...|..-|.++....||.. .-
T Consensus 201 HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~ 279 (895)
T KOG2076|consen 201 HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI 279 (895)
T ss_pred hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH
Confidence 2234566789999999999999999999999999875 33433333356778899999999999999887755332 22
Q ss_pred ---HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh------
Q 043999 178 ---FGILIKGCCEAGDLNKAFEVLNQLEEMG-FSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHT------ 247 (574)
Q Consensus 178 ---~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------ 247 (574)
--..++.+...++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+..+...+|..-
T Consensus 280 ~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 280 EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 2234566777888899999998877622 233556788999999999999999988877765222222211
Q ss_pred ----------------HH----HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 248 ----------------YT----VLICGLFKNGLQKDGFEFYEKMQLNG--VSPSLYTYNCLIHEYCNEGKVSEGFKLFDE 305 (574)
Q Consensus 248 ----------------~~----~li~~~~~~g~~~~a~~~~~~~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 305 (574)
|. -+.-++.+....+...-+...+.+.. +.-+...|..+..+|...|++.+|+++|..
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred ccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 11 22333444444444444555555554 334566888999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 043999 306 MRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSN------ 379 (574)
Q Consensus 306 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------ 379 (574)
+......-+...|-.+..+|...|.+++|.+.|+..+... +-+...--+|...+.+.|+.++|.+.++.+..-
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e 518 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAE 518 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchh
Confidence 9888666678899999999999999999999999998763 334455566778889999999999999886421
Q ss_pred --CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043999 380 --GQSPSVVTYNVLIRAFSKAGNSKMASDLVREM 411 (574)
Q Consensus 380 --g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 411 (574)
+..|+..........+.+.|+.++=..+..+|
T Consensus 519 ~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 519 ACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 23334444444455666777776644443333
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.7e-12 Score=116.85 Aligned_cols=449 Identities=11% Similarity=0.050 Sum_probs=342.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG 184 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 184 (574)
+...|-....-=..++++..|..+|++.+..+ ..+...|-..+.+-.+..++..|..++++.....|.--..|.-.+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34456555555667788899999999999865 44777888889999999999999999999887766656667777777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043999 185 CCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDG 264 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 264 (574)
--..|++..|.++|++-.+ ..|+...|.+.|+.=.+-+.++.|..++++..-- .|++.+|.-....-.+.|...-+
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 7788999999999999887 4799999999999999999999999999998764 48999999999999999999999
Q ss_pred HHHHHHHHHC-C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH---HHHHH--
Q 043999 265 FEFYEKMQLN-G-VSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACN-VVTYNTLICGLCKEMRV---QEAER-- 336 (574)
Q Consensus 265 ~~~~~~~~~~-g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~---~~A~~-- 336 (574)
..+|+...+. | -..+...+.+....-.++..++.|.-+|+-.+..-+... ...|......=-+-|+. ++++-
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999988753 1 011233455555555667889999999998877633321 34444444443445553 33332
Q ss_pred ---HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH--------HHHhcCChHH
Q 043999 337 ---LLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSV--VTYNVLIR--------AFSKAGNSKM 403 (574)
Q Consensus 337 ---~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~--------~~~~~g~~~~ 403 (574)
-|+.+.+.+ +.|-.+|-..+..-...|+.+...++|++.+.. ++|-. ..|...|- .-....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 244555554 667788888888888999999999999999876 44422 12222221 1235688999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 404 ASDLVREMEERGITPSEVTYTILID----SFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFN 479 (574)
Q Consensus 404 A~~~~~~m~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 479 (574)
+.++++..++. ++-...||.-+=- -..++.++..|.+++...+. .-|...++...|..-.+.+++|.+.++++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999884 4545666655433 33578899999999988774 47888899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043999 480 SMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGL-VPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKP 558 (574)
Q Consensus 480 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 558 (574)
+.++-++. +..+|......=...|+.+.|..+|+-.+.... ......|.+.|+.-...|.++.|..+++++++. .+
T Consensus 462 kfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~ 538 (677)
T KOG1915|consen 462 KFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQ 538 (677)
T ss_pred HHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cc
Confidence 99987654 788888888877889999999999999987521 123467888888888899999999999999976 44
Q ss_pred CHHHHHHH
Q 043999 559 SVSLYNIL 566 (574)
Q Consensus 559 ~~~~~~~l 566 (574)
....|-..
T Consensus 539 h~kvWisF 546 (677)
T KOG1915|consen 539 HVKVWISF 546 (677)
T ss_pred cchHHHhH
Confidence 44455443
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=3.1e-11 Score=116.36 Aligned_cols=437 Identities=11% Similarity=-0.012 Sum_probs=345.8
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC---CCCCH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQML----DSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK---VELDV 175 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 175 (574)
+.+..+|.+-...=-++|+.+....+..+-+ ..|+.-+-..|-.=...+-..|.+-.+..+......- ...--
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 4566788887777778899988888877643 5677778778877777777888887777777665432 23345
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043999 176 YSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGL 255 (574)
Q Consensus 176 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 255 (574)
.||+.-...|.+.+.++-|+.+|...++. ++.+...|...+..--..|..++-..+|++....-++ ....|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHH
Confidence 68999999999999999999999998875 3346677887777777789999999999999876443 667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043999 256 FKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAE 335 (574)
Q Consensus 256 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 335 (574)
...|+...|..++....+.... +...|..-+........+++|..+|.+.... .|+...|.--+..---.+..++|+
T Consensus 595 w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 8899999999999999887433 6778888889999999999999999998765 456667776666666789999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043999 336 RLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERG 415 (574)
Q Consensus 336 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 415 (574)
+++++.++. ++--...|-.+.+.+-+.++++.|.+.|..-.+. ++-.+..|-.+...--+.|.+-.|..++++..-++
T Consensus 672 rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 672 RLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 999998876 2333456777888889999999999988776554 44456678777787788899999999999988775
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043999 416 ITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNM 495 (574)
Q Consensus 416 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 495 (574)
.. +...|...|..-.+.|..+.|..+..+.... ++.+...|..-|....+.++-......+++. .-|+.+...
T Consensus 750 Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVlla 822 (913)
T KOG0495|consen 750 PK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLA 822 (913)
T ss_pred CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHH
Confidence 44 7888999999999999999999998888765 4667778888888877777755555555543 457778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 496 MIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 496 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
+...+-...++++|.+.|.+.++.+ +....+|.-+...+.+.|.-++-..++++....
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 8888888899999999999999863 334578888888889999888888888877643
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.7e-12 Score=117.90 Aligned_cols=163 Identities=11% Similarity=0.017 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 043999 352 TYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFV 431 (574)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 431 (574)
|...+.+.|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-++..++.. +.|...|-.|.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 4444445555555555555555555544211 33445555555555555555555555555442 224555555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 432 RSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALR 511 (574)
Q Consensus 432 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 511 (574)
-.+...=|+-.|++..... +.|...|.+|..+|.+.++.++|++.|......+-. +...+..|...|-+.++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555555554442 344555555555555555555555555555543311 33455555555555555555555
Q ss_pred HHHHHHH
Q 043999 512 LLGEMNE 518 (574)
Q Consensus 512 ~~~~m~~ 518 (574)
.+++-++
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 5554443
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=6.5e-13 Score=130.79 Aligned_cols=291 Identities=11% Similarity=0.010 Sum_probs=153.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCCHHHHH
Q 043999 223 NGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYN--CLIHEYCNEGKVSEGF 300 (574)
Q Consensus 223 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~ 300 (574)
.|++++|++.+.+..+..-.| ...|........+.|+++.|.+.+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 567776666665544432111 112222233335566666666666666543 33332221 2244555566666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 301 KLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNG 380 (574)
Q Consensus 301 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 380 (574)
+.++++.+..+. ++.....+...|.+.|++++|..++..+.+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------
Confidence 666666555443 4555555556666666666666666665554422111 111000
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043999 381 QSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGV 460 (574)
Q Consensus 381 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 460 (574)
..+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +|+....
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~-- 299 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV-- 299 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--
Confidence 001112222222223334444444444332 1235555666666666677777777766666653 3444221
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043999 461 LIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGK 540 (574)
Q Consensus 461 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 540 (574)
++.+....++.+++.+..++..+..+. |...+..+...+.+.|++++|.+.|+++.+ ..|+..++..+..++.+.|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCC
Confidence 223334456677777777766665332 455566667777777777777777777776 35666666667777777777
Q ss_pred HHHHHHHHHHHHH
Q 043999 541 WPEAEVLLNQMLK 553 (574)
Q Consensus 541 ~~~A~~~~~~m~~ 553 (574)
.++|..++++.+.
T Consensus 377 ~~~A~~~~~~~l~ 389 (398)
T PRK10747 377 PEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766653
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.1e-11 Score=111.86 Aligned_cols=356 Identities=11% Similarity=0.041 Sum_probs=244.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH-----------------------------HHHHHH
Q 043999 171 VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTS-----------------------------LIDGCC 221 (574)
Q Consensus 171 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----------------------------li~~~~ 221 (574)
...|.+.+......+-+.|..+.|++.|......- +..-..|.. +..++.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 34455555555566666667777776666655421 111111111 223344
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHH-H
Q 043999 222 KNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGV--SPSLYTYNCLIHEYCNEGKVS-E 298 (574)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~--~p~~~~~~~li~~~~~~g~~~-~ 298 (574)
...+.+++.+-.+.....|...+...-+....+.....++++|+.+|+++.+... --|..+|..++-.--.+.++. -
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 4456666666666666666654444444455556666777777777777776521 014556665553322222211 1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 299 GFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKS 378 (574)
Q Consensus 299 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 378 (574)
|..++ .+-+- .+.|...+.+.|.-.++.++|...|++.++.+ +.....|+.+.+-|....+...|.+-++.+++
T Consensus 319 A~~v~-~idKy----R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 319 AQNVS-NIDKY----RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHH-HhccC----CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 11111 11111 44566777788888899999999999999876 44667889999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043999 379 NGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTY 458 (574)
Q Consensus 379 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 458 (574)
.. +.|-..|..|.++|.-.+.+.-|+-.|++..+.. +.|...|.+|.++|.+.++.++|.+.|......| ..+...+
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 74 4588999999999999999999999999998863 4488999999999999999999999999999876 4566889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043999 459 GVLIHGLCMKGNMKEASKLFNSMWET----KL-EP-NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTI 532 (574)
Q Consensus 459 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 532 (574)
..|.+.|-+.++.++|...|.+-++. |. .| ...+-.-|..-+.+.+++++|..+......-
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------------- 536 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------------- 536 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-------------
Confidence 99999999999999999999987762 22 22 1222233555667778888877766554432
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043999 533 GVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
.-..++|..++.+....
T Consensus 537 -----~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 -----ETECEEAKALLREIRKI 553 (559)
T ss_pred -----CchHHHHHHHHHHHHHh
Confidence 12346777777777653
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=8.3e-13 Score=130.80 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=50.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043999 187 EAGDLNKAFEVLNQLEEMGFSPNV-VIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGF 265 (574)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (574)
..|+++.|.+.+.+..+.. |+. ..+-.....+.+.|+.++|.+.+.+..+....+...........+...|++++|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4555566655555544432 222 2222333444455555555555555443321111112222234444444444444
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 266 EFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR 309 (574)
Q Consensus 266 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 309 (574)
..++.+.+.. +-+...+..+...+.+.|++++|.+.+..+.+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4444444432 112333444444444444444444444444443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1e-12 Score=129.47 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 043999 364 GETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMY 443 (574)
Q Consensus 364 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 443 (574)
++.+++.+..+...+.. +-|...+..+...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++
T Consensus 308 ~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred CChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444443331 112333333444444444444444444444432 234344444444444444444444444
Q ss_pred HH
Q 043999 444 SL 445 (574)
Q Consensus 444 ~~ 445 (574)
++
T Consensus 385 ~~ 386 (398)
T PRK10747 385 RD 386 (398)
T ss_pred HH
Confidence 33
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=8.1e-13 Score=130.88 Aligned_cols=120 Identities=12% Similarity=0.092 Sum_probs=49.3
Q ss_pred cCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 043999 154 SCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLF 233 (574)
Q Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 233 (574)
.|+++.|.+.+.+.....+.....+-.......+.|+.+.|.+.+++..+....++..........+...|++++|.+.+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444444444433332222222233333444444444444444444433211111112222344444444455555444
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 234 RKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLN 274 (574)
Q Consensus 234 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 274 (574)
+++.+..+. +...+..+...+.+.|++++|.+.+..+.+.
T Consensus 177 ~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 177 DKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 444444322 3334444444445555555555555444444
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.4e-11 Score=117.02 Aligned_cols=453 Identities=12% Similarity=0.078 Sum_probs=303.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
..-+..+++-+..+.++.-|.-+-++....+..|+.. --+.+++.-.|++++|..+...-.- ...|..+.......+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~l-e~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKL-EKRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHH
Confidence 3445566666666677777777777766554444333 2356666667777777665554321 244666777777777
Q ss_pred HhcCChhHHHHHHH----HHHHCC---------CCCCHHh----HHHHH-------HHHHhcCCHHHHHHHHHHHHhCCC
Q 043999 186 CEAGDLNKAFEVLN----QLEEMG---------FSPNVVI----YTSLI-------DGCCKNGDIERAKMLFRKIGELGL 241 (574)
Q Consensus 186 ~~~g~~~~A~~~~~----~m~~~g---------~~p~~~~----~~~li-------~~~~~~g~~~~A~~~~~~~~~~~~ 241 (574)
.+..++++|..++. .+.... +.+|..- -+.-. ..|....+.++|...|.+....++
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~ 172 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA 172 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch
Confidence 77777777777776 221100 0111111 01111 123334455666666665544322
Q ss_pred CCChhhHHHHHHHHHh-----------------cCCHHHHHHHHHHHH-----------------HCCCCCCHhhHHHHH
Q 043999 242 VATQHTYTVLICGLFK-----------------NGLQKDGFEFYEKMQ-----------------LNGVSPSLYTYNCLI 287 (574)
Q Consensus 242 ~~~~~~~~~li~~~~~-----------------~g~~~~a~~~~~~~~-----------------~~g~~p~~~~~~~li 287 (574)
. .-..+..++....- .+...+-++.+-++. -.+..-+......-.
T Consensus 173 ~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a 251 (611)
T KOG1173|consen 173 K-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA 251 (611)
T ss_pred h-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence 2 11122222221111 011111111111111 011223444455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 043999 288 HEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETD 367 (574)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 367 (574)
+-+...+++.+..++++...+..+ +....+-.-|.++...|+..+-..+=.++.+. .|....+|-++.-.|...|+..
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence 677788999999999999988743 36667777778899999988888888888876 4667889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 368 KAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQ 447 (574)
Q Consensus 368 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 447 (574)
+|++.|.+....+.. =...|-.+...|.-.|..++|...+...-+. ++-...-+--+.--|.+.+.++-|.+.|.+..
T Consensus 330 eARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 330 EARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999988765322 2457888999999999999999999887654 11111123334445888999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043999 448 KSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWET--KLEP----NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGL 521 (574)
Q Consensus 448 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 521 (574)
... |.|+...+.+.-.....+.+.+|..+|+..+.. ...+ -..+++.|+.+|.+.+++++|+..+++.+.. .
T Consensus 408 ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~ 485 (611)
T KOG1173|consen 408 AIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-S 485 (611)
T ss_pred hcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-C
Confidence 764 778888898888888899999999999988732 1111 2346889999999999999999999999986 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHhhh
Q 043999 522 VPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYRAK 570 (574)
Q Consensus 522 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 570 (574)
+.|..++.++.-.+...|+++.|...|.+.+ .+.|+..+...+++-+
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 5588999999999999999999999999998 5699998888877654
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.4e-15 Score=143.02 Aligned_cols=262 Identities=16% Similarity=0.157 Sum_probs=106.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 043999 285 CLIHEYCNEGKVSEGFKLFDEMRHRE-VACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDA 363 (574)
Q Consensus 285 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 363 (574)
.+...+.+.|++++|+++++...... .+.|...|..+.......++.++|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45677778888888888886544443 2335555566666667788888888888888876522 55566677766 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043999 364 GETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERG-ITPSEVTYTILIDSFVRSDDMEKAFEM 442 (574)
Q Consensus 364 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~ 442 (574)
+++++|.+++....+. .++...+...+..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776654 3566667778888888899999999888877532 345677788888888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 443 YSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLV 522 (574)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 522 (574)
+++..+.. |.|......++..+...|+.+++.++++...... ..|+..+..+..+|...|+.++|+.++++..+. .+
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 99988864 4457778888888999999998888888776653 335667788889999999999999999998875 24
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 523 PNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 523 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
.|+.+...+.+++...|+.++|.++.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4777888888999999999999988887754
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.2e-11 Score=115.27 Aligned_cols=398 Identities=12% Similarity=0.041 Sum_probs=244.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR-SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
..+-+..+-|.++|.+++|++.|.+.++. .|+ +.-|...-.+|...|++++..+-..+..+..|.-+-++..-.+++
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 45666778889999999999999999985 577 667777888899999999999888887776566667787778888
Q ss_pred HhcCChhHHHHHHHHHH-HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-CC--CCCChhhHHHHHHHHHh----
Q 043999 186 CEAGDLNKAFEVLNQLE-EMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGE-LG--LVATQHTYTVLICGLFK---- 257 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~~li~~~~~---- 257 (574)
-+.|++++|+.=..-.- -.|+. |..+--.+=..+- ..|..-.++-.+ .+ +.|+.....+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 88888888754322211 11111 1111111111111 111111111111 11 22333222222222111
Q ss_pred ------------------------cCCHHHHHHHHHHHHHC-CCCCCH-----------hhHHHHHHHHHhcCCHHHHHH
Q 043999 258 ------------------------NGLQKDGFEFYEKMQLN-GVSPSL-----------YTYNCLIHEYCNEGKVSEGFK 301 (574)
Q Consensus 258 ------------------------~g~~~~a~~~~~~~~~~-g~~p~~-----------~~~~~li~~~~~~g~~~~A~~ 301 (574)
...+.+|.+.+.+-... -..++. .+.......+.-.|+.-.|..
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 01122222222221110 001111 111111112334677778888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043999 302 LFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQ 381 (574)
Q Consensus 302 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 381 (574)
-|+..++....++ ..|--+...|....+.++-.+.|....+.+ +.|+.+|..-..++.-.+++++|..-|++.++...
T Consensus 348 d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 348 DFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 8888877755533 336666777888888888888888887765 44666777777777777888888888888877532
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------CC
Q 043999 382 SPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFS-------PD 454 (574)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~ 454 (574)
.+...|-.+..+..+.++++++...|++.+++ ++..+..|+.....+..++++++|.+.|+..++.... +.
T Consensus 426 -e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 426 -ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 24556666666667788888888888888776 4446677888888888888888888888887764211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 455 VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 455 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
+.+.-.++..- -.+++..|.+++++..+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 504 plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 504 PLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22222222222 337888888888888876444 456788888888888888888888887654
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=3.8e-15 Score=140.15 Aligned_cols=259 Identities=16% Similarity=0.135 Sum_probs=64.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcC
Q 043999 111 SIIDAHLKSRLSDQALFYFHQMLDSGVRPR-SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAG 189 (574)
Q Consensus 111 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 189 (574)
.+...+.+.|++++|++++++......+|+ ..-|..+.......+++++|...++++....+.+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 345555566666666666644433321222 22233333344445555566655555554433344445455444 4555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 043999 190 DLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELG-LVATQHTYTVLICGLFKNGLQKDGFEFY 268 (574)
Q Consensus 190 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 268 (574)
++++|.+++++..+.. ++...+...+..+.+.++++++.++++++.... ...+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555444321 344444555555555555555555555544321 1234444555555555555555555555
Q ss_pred HHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 269 EKMQLNGVSP-SLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGIS 347 (574)
Q Consensus 269 ~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 347 (574)
++.++. .| |....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...|+...+.. +
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 555544 22 34444555555555555555555554444332 2234444455555555555555555555554432 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 348 PNVITYNKLIDGFCDAGETDKAFRLFNQL 376 (574)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 376 (574)
.|......+.+++...|+.++|.++..++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 34444445555555555555555554443
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=4.2e-13 Score=129.84 Aligned_cols=288 Identities=15% Similarity=0.094 Sum_probs=224.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 259 GLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVA--CNVVTYNTLICGLCKEMRVQEAER 336 (574)
Q Consensus 259 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~ 336 (574)
-+..+|...|.++..+- .-...+...+..+|...+++++|.++|+.+++..+- -+...|.+.+--+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 35678999999866552 223456677889999999999999999999876321 156677776654321 12223
Q ss_pred HH-HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043999 337 LL-DQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSP-SVVTYNVLIRAFSKAGNSKMASDLVREMEER 414 (574)
Q Consensus 337 ~~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 414 (574)
.+ +.+.+. -+-.+.+|.++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 33 333433 2557889999999999999999999999999986 44 6788888888899999999999999998765
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043999 415 GITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYN 494 (574)
Q Consensus 415 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 494 (574)
... +...|-.+.-.|.+.++++.|.-.|+++.+.+ +-+.+....+...+-+.|+.|+|+++++++...+.+ |+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 221 33455567778999999999999999999876 566777888888899999999999999999987655 555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043999 495 MMIFGYCKEGNSYRALRLLGEMNEKGLVPN-IASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVS 561 (574)
Q Consensus 495 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 561 (574)
..+..+...+++++|+..++++.+ +.|+ ..+|..+...|.+.|+.+.|+.-|--|.+. +|...
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l--dpkg~ 625 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL--DPKGA 625 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC--CCccc
Confidence 566777888999999999999999 4555 467778889999999999999999999865 45443
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.8e-12 Score=112.51 Aligned_cols=298 Identities=15% Similarity=0.090 Sum_probs=212.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCC----CCHHHHHHHHHH
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVE----LDVYSFGILIKG 184 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~li~~ 184 (574)
|.+=++.+ -++++++|+++|-+|.+.. +.+..+--+|.+.|...|.+|.|+.+.+.+..+.. .-..+...|.+-
T Consensus 39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 44444443 3578899999999999853 33455666788889999999999999998877511 123356667788
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCC
Q 043999 185 CCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQ----HTYTVLICGLFKNGL 260 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~ 260 (574)
|...|-+|.|.++|..+.+.|. .-......|+..|-...+|++|++.-+++.+.+..+.. ..|.-|...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 8899999999999999887542 24557788999999999999999999998887654332 234455555566788
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 261 QKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQ 340 (574)
Q Consensus 261 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 340 (574)
.+.|..++.+..+.+. -.+..-..+.+.+...|++..|.+.++.+.+.++.--+.+...|..+|.+.|+.++....+..
T Consensus 196 ~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888888887632 234444556677888899999999999988886665566777888888899999998888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHC
Q 043999 341 MKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSK---AGNSKMASDLVREMEER 414 (574)
Q Consensus 341 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 414 (574)
+.+.. +....-..+.+......-.+.|...+.+-... +|+...+..++..... .|...+.+.+++.|...
T Consensus 275 ~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 275 AMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 87763 34444444555444445555665555544443 5888888888876543 34456666677777643
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.1e-11 Score=109.75 Aligned_cols=220 Identities=14% Similarity=0.086 Sum_probs=112.6
Q ss_pred cCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------hHHHHHHHHHhcCCHH
Q 043999 154 SCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVV------IYTSLIDGCCKNGDIE 227 (574)
Q Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~ 227 (574)
+++.++|..+|-+|....+.+..+.-+|.+.|-+.|+.|.|+++.+.+.+. ||.. ....|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 466777777777777666666666777777777777777777777777653 4422 2334455566666666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHH
Q 043999 228 RAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLY----TYNCLIHEYCNEGKVSEGFKLF 303 (574)
Q Consensus 228 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~ 303 (574)
.|+++|..+.+.+.. -..+...|+..|-...++++|++.-+++.+.+..+..+ .|--|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 666666666554322 33445556666666666666666666665544332211 1222333333334444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 304 DEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKS 378 (574)
Q Consensus 304 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 378 (574)
.+..+.+.+ .+..--.+.......|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444443222 12222223333444444444444444444433222223334444444444444444444444433
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=7.9e-13 Score=128.01 Aligned_cols=282 Identities=12% Similarity=0.101 Sum_probs=203.0
Q ss_pred ChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 043999 156 SFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGF--SPNVVIYTSLIDGCCKNGDIERAKMLF 233 (574)
Q Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~ 233 (574)
+..+|...|+...............+.++|...+++++|.++|+.+.+... --+..+|.+.+--+-+. -+---+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHHHHH
Confidence 456888888886666666667778888888899999999999988876421 11456677666544321 1111222
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043999 234 RKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSP-SLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVA 312 (574)
Q Consensus 234 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 312 (574)
+.+.+... -.+.+|.++.++|.-+++.+.|++.|++.... .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 411 q~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--- 484 (638)
T KOG1126|consen 411 QDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--- 484 (638)
T ss_pred HHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---
Confidence 23333322 36788888889998889999999988888865 34 6778888888888888888888888887766
Q ss_pred CCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043999 313 CNVVTYN---TLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYN 389 (574)
Q Consensus 313 ~~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 389 (574)
|+..|| -+...|.+.++++.|+-.|+.+.+.+ +.+.+....+...+-+.|+.|+|+.+++++...+.. |+..--
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 444444 45667888888888888888888775 456667777777888888888888888888776543 555544
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 390 VLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSG 450 (574)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 450 (574)
..+..+...++.++|+..++++++. ++-+...+..+...|-+.|+.+.|+.-|.-+.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5566677778888888888888776 23345667777778888888888888887777653
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=1.2e-10 Score=116.12 Aligned_cols=252 Identities=13% Similarity=0.116 Sum_probs=159.0
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCCcchhHHH
Q 043999 31 LFNWASRQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPVTKSRLYE 110 (574)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 110 (574)
|+-.+...|+.|+..||.++|..++. .|+.+.|- +|..|-....+....+++.++..-...-.......|-+.+|.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~---~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt 87 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCT---KGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYT 87 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcc---cCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHH
Confidence 44445567999999999999999998 88888887 666665444444444444444331111111112245568999
Q ss_pred HHHHHHHhcCChHHHHHHHHH-HH-------hCCCCCCHHH--------------HHHHHHHHHhcCChhHHHHHHHHcc
Q 043999 111 SIIDAHLKSRLSDQALFYFHQ-ML-------DSGVRPRSNT--------------FNSLLIFVIKSCSFDKGWLFFSENR 168 (574)
Q Consensus 111 ~li~~~~~~g~~~~A~~~~~~-~~-------~~g~~p~~~~--------------~~~ll~~~~~~g~~~~A~~~~~~~~ 168 (574)
+|..+|.+.|+... ++..++ |. ..|+..-..- -..++..+.-.|-++.+++++..++
T Consensus 88 ~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999765 444443 11 2222110111 1113334455667777777777666
Q ss_pred cCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 043999 169 CKVELDVYSFGILIKGCCEA-GDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHT 247 (574)
Q Consensus 169 ~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 247 (574)
..-...++.. .++-+... ..+++-..+.+...+ .|+..+|..+++.-...|+++.|..++.+|.+.|++.+...
T Consensus 167 vsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 167 VSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred cccccchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 5411121111 23333322 233444443333333 47888899999988889999999999999999888877777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 043999 248 YTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGK 295 (574)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 295 (574)
|-.|+-+ .+...-+..+++.|.+.|+.|+..|+...+-.+.++|.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6666655 77777788888888888999998888777666665444
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=7e-11 Score=110.28 Aligned_cols=398 Identities=14% Similarity=0.066 Sum_probs=258.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHH
Q 043999 143 TFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPN-VVIYTSLIDGCC 221 (574)
Q Consensus 143 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~ 221 (574)
.+....+-+.+.|.+++|++.|.+..+..|..++-|.....+|...|+|++..+--.+.++. .|+ +..+..-..++-
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34445666788889999999998888764444788888888888899999888888777774 455 335666667777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCCHhhHHHHHHHHH-------
Q 043999 222 KNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQL-NG--VSPSLYTYNCLIHEYC------- 291 (574)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~g--~~p~~~~~~~li~~~~------- 291 (574)
..|++++|+.=..-..-.+-..+..+--.+=+.+-+ .|..-..+-.+ ++ +-|......+....+.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 788888876433222111111111111111111111 11111111111 11 1233222222221110
Q ss_pred ----------------h--cC---CHHHHHHHHHHHHh-CCCCC--C---------HHHHHHHHHHHHhcCCHHHHHHHH
Q 043999 292 ----------------N--EG---KVSEGFKLFDEMRH-REVAC--N---------VVTYNTLICGLCKEMRVQEAERLL 338 (574)
Q Consensus 292 ----------------~--~g---~~~~A~~~~~~m~~-~~~~~--~---------~~~~~~li~~~~~~~~~~~A~~~~ 338 (574)
. .+ .+.+|.+.+.+-.. ....+ + ..+...-...+.-.|+.-.|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 0 11 12233332222110 00011 1 112222222334578889999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043999 339 DQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITP 418 (574)
Q Consensus 339 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 418 (574)
+..++....++ ..|-.+..+|....+.++..+.|++....+.. ++.+|..-.+.+.-.+++++|..=|++.+.....
T Consensus 350 ~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe- 426 (606)
T KOG0547|consen 350 DAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE- 426 (606)
T ss_pred HHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-
Confidence 99988753333 23777778899999999999999999887543 7788888888888899999999999999887432
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCH--H
Q 043999 419 SEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLE-----PND--V 491 (574)
Q Consensus 419 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~--~ 491 (574)
+...|..+.-+..+.+++++++..|++..+. ++.-+..|+.....+...+++++|.+.|+..++.... .+. .
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 5566777777778899999999999999876 5677889999999999999999999999999874222 111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 492 VYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 492 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
+--.++.. --.+++..|.+++++..+.+ +-....|..|.....+.|+.++|+++|++...
T Consensus 506 V~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 506 VHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11222211 13489999999999999853 22457899999999999999999999998763
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=7.4e-11 Score=107.82 Aligned_cols=292 Identities=14% Similarity=0.092 Sum_probs=146.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043999 223 NGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKL 302 (574)
Q Consensus 223 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 302 (574)
.|++.+|+++..+-.+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+..-.++....-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 67777777777776655543 23344455556666677777777776666553344555555666666666777777666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 303 FDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQS 382 (574)
Q Consensus 303 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 382 (574)
.+++.+.++. ++........+|.+.|++.+...++..+.+.|.-.|...-..
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 6666665554 555666666666667777776666666666664433321000
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043999 383 PSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLI 462 (574)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 462 (574)
...+|..+++-....+..+.-...+++.... .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. ..
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RL 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HH
Confidence 0112333333322222223222333333222 12233334444444445555555555555544444333311 11
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 043999 463 HGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWP 542 (574)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 542 (574)
-.+.+-++.+.-++..++-...... ++..+.+|+..|.+.+.+.+|.+.|+...+ ..|+..+|+.+.+++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChH
Confidence 1233334444444444433332111 334445555555555555555555554444 3455555555555555555555
Q ss_pred HHHHHHHHHH
Q 043999 543 EAEVLLNQML 552 (574)
Q Consensus 543 ~A~~~~~~m~ 552 (574)
+|.+..++.+
T Consensus 379 ~A~~~r~e~L 388 (400)
T COG3071 379 EAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.56 E-value=1.4e-08 Score=98.29 Aligned_cols=401 Identities=10% Similarity=0.085 Sum_probs=229.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC-------CCCCHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK-------VELDVYSF 178 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~ 178 (574)
..+|...+......|-++-++.+|++.++. ++..-+-.+..+++.++.++|.+.+...... .+.+-..|
T Consensus 138 ~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 138 DRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 457888899888999999999999999884 3344777888999999999999999887643 34455667
Q ss_pred HHHHHHHHhcCChhHH---HHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043999 179 GILIKGCCEAGDLNKA---FEVLNQLEEMGFSPN--VVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLIC 253 (574)
Q Consensus 179 ~~li~~~~~~g~~~~A---~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 253 (574)
.-+-+..+++-+.-.. ..+++.+... -+| ...|++|.+-|.+.|.+++|.++|++....- ..+.-|+.+.+
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd 289 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFD 289 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHH
Confidence 7777666665443322 2333333332 233 3478888899999999999999888876532 23344555555
Q ss_pred HHHhcCC----------------------HHHHHHHHHHHHHCC-----------CCCCHhhHHHHHHHHHhcCCHHHHH
Q 043999 254 GLFKNGL----------------------QKDGFEFYEKMQLNG-----------VSPSLYTYNCLIHEYCNEGKVSEGF 300 (574)
Q Consensus 254 ~~~~~g~----------------------~~~a~~~~~~~~~~g-----------~~p~~~~~~~li~~~~~~g~~~~A~ 300 (574)
.|.+-.. ++-.+..|+.+.... -+.++..|..-+. +..|+..+-.
T Consensus 290 ~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i 367 (835)
T KOG2047|consen 290 AYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQI 367 (835)
T ss_pred HHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHH
Confidence 5543211 111122233332221 0112223322222 2245566666
Q ss_pred HHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHH
Q 043999 301 KLFDEMRHREVAC------NVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPN---VITYNKLIDGFCDAGETDKAFR 371 (574)
Q Consensus 301 ~~~~~m~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~ 371 (574)
..+.+..+. +.| -...|..+...|-..|+++.|..+|++..+-..+.- ..+|.....+=.++.+++.|++
T Consensus 368 ~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 368 NTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 666666543 211 224566777777778888888888887776533221 2344444555556677777777
Q ss_pred HHHHHHHCCCC-----------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 043999 372 LFNQLKSNGQS-----------------PSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSD 434 (574)
Q Consensus 372 ~~~~~~~~g~~-----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 434 (574)
+.+.....--. .+...|...++..-..|-++....+++++.+..+. ++.........+-...
T Consensus 447 lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~ 525 (835)
T KOG2047|consen 447 LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHK 525 (835)
T ss_pred HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhH
Confidence 77666432111 12334555555555667777777777777766443 2211111111223445
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHH
Q 043999 435 DMEKAFEMYSLMQKSGFSPDV-YTYGVLIHGLCM---KGNMKEASKLFNSMWETKLEPNDVVYNMMIFGY--CKEGNSYR 508 (574)
Q Consensus 435 ~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~~ 508 (574)
-++++.++|++-+..--.|++ ..|+..+.-+.+ .-+++.|..+|++.++ +++|...-+--|+.+- -+.|....
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 566777777665544323443 244444433332 2356777777777776 5555433333333222 23466666
Q ss_pred HHHHHHHHHHC
Q 043999 509 ALRLLGEMNEK 519 (574)
Q Consensus 509 A~~~~~~m~~~ 519 (574)
|+.++++....
T Consensus 605 amsiyerat~~ 615 (835)
T KOG2047|consen 605 AMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHhc
Confidence 77777775543
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=9.4e-11 Score=107.12 Aligned_cols=294 Identities=15% Similarity=0.101 Sum_probs=185.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043999 187 EAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFE 266 (574)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 266 (574)
-.|++.+|.+...+-.+.+-. ....|..-+.+--..|+.+.+-.++.+..+....++....-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 479999999999998877644 3456777778888999999999999999887445567777788889999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043999 267 FYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGI 346 (574)
Q Consensus 267 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 346 (574)
-.+++.+.+. -+..........|.+.|++.+...++..+.+.+.-.|... .++=
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~le-------- 228 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARLE-------- 228 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHHH--------
Confidence 9999998763 3677788899999999999999999999999977644321 1100
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 043999 347 SPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTIL 426 (574)
Q Consensus 347 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 426 (574)
..+|+.+++-....+..+.-...|+..... .+.++..-.+++.-+.+.|+.++|.++..+..+++..|. ...+
T Consensus 229 ---~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~ 301 (400)
T COG3071 229 ---QQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL 301 (400)
T ss_pred ---HHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH
Confidence 012222333222222223323333333221 122334444455555555666666666655555544433 1111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043999 427 IDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNS 506 (574)
Q Consensus 427 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 506 (574)
-.+.+-++.+.-.+..++-.+. .+.++..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|+.+.+++.+.|+.
T Consensus 302 -~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 302 -IPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEP 377 (400)
T ss_pred -HhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCCh
Confidence 1233444544444444444332 133445556666666666666666666665554 355666666666666666666
Q ss_pred HHHHHHHHHHHH
Q 043999 507 YRALRLLGEMNE 518 (574)
Q Consensus 507 ~~A~~~~~~m~~ 518 (574)
.+|.++.++...
T Consensus 378 ~~A~~~r~e~L~ 389 (400)
T COG3071 378 EEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.53 E-value=1.3e-08 Score=98.58 Aligned_cols=452 Identities=14% Similarity=0.114 Sum_probs=303.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDS-GVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG 184 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 184 (574)
+.+|-.......++|+...-...|++.+.. -+.-....|...+......|-.+-+..+|++.... ++..-+--|..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~~~eeyie~ 178 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---APEAREEYIEY 178 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence 467999999999999999999999998864 22234567888999898999999999999998765 55557777889
Q ss_pred HHhcCChhHHHHHHHHHHHCC------CCCCHHhHHHHHHHHHhcCCHHHH---HHHHHHHHhCCCCCChhhHHHHHHHH
Q 043999 185 CCEAGDLNKAFEVLNQLEEMG------FSPNVVIYTSLIDGCCKNGDIERA---KMLFRKIGELGLVATQHTYTVLICGL 255 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~li~~~ 255 (574)
+++.+++++|.+.+....... -+.+...|..+-+...++-+.-.. ..+++.+..+-...--..|++|.+.|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 999999999999998876421 234556677777776665543332 23344443322111235799999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhCCC--
Q 043999 256 FKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNE----------------G------KVSEGFKLFDEMRHREV-- 311 (574)
Q Consensus 256 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~m~~~~~-- 311 (574)
.+.|.+++|.++|++.... ...+.-|+.+.+.|+.- | +++-....|+.+..+.+
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 9999999999999998865 22344444444444321 1 12223344444433321
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 312 ---------ACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPN------VITYNKLIDGFCDAGETDKAFRLFNQL 376 (574)
Q Consensus 312 ---------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~ 376 (574)
+.++..|..-+.. ..|+..+-...|.++.+. +.|. ...|..+...|-..|+++.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 1134444444333 367777888888887764 2332 235788889999999999999999999
Q ss_pred HHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CC------CHhHHHHHHHHHHhcCCH
Q 043999 377 KSNGQSPS---VVTYNVLIRAFSKAGNSKMASDLVREMEERGI-----------TP------SEVTYTILIDSFVRSDDM 436 (574)
Q Consensus 377 ~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p------~~~~~~~li~~~~~~g~~ 436 (574)
.+...+.- ..+|......-.+..+++.|+.+++......- ++ +...|...++..-..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 87644322 34566666667788889999998887653211 11 223466667766778899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cCCHHHHHHH
Q 043999 437 EKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN-DVVYNMMIFGYCK---EGNSYRALRL 512 (574)
Q Consensus 437 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~---~g~~~~A~~~ 512 (574)
+....+|+.+.+..+ .++.+.-.....+-...-++++.+++++-+..-.-|+ ...|+..+.-+.+ .-+.+.|..+
T Consensus 494 estk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 999999999988764 2333322233334456668999999988776544455 3467777766654 2368999999
Q ss_pred HHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHh
Q 043999 513 LGEMNEKGLVPNIAS--YSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSV--SLYNILYR 568 (574)
Q Consensus 513 ~~~m~~~g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~ 568 (574)
|++.++ |.+|...- |......--+.|....|..++++... ++++.. ..||+.|+
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 999999 57765432 22222233446888899999999764 345543 36777765
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.52 E-value=2.2e-09 Score=104.01 Aligned_cols=440 Identities=13% Similarity=0.112 Sum_probs=291.5
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHH
Q 043999 102 PVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGIL 181 (574)
Q Consensus 102 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (574)
++.....|..++..| ..+++...+.+.+.+++. .+....|.....-.+...|+-++|.............+.+.|..+
T Consensus 4 ~~KE~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence 344456677788877 678899999999988873 444555666555667788999999998888777667778889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQ 261 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 261 (574)
.-.+-...++++|++.+......+. -|...+.-+.-.-.+.|+++.......++.+..+. ....|..++.++.-.|+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH
Confidence 9888899999999999999888653 36677777777777888888888888777765432 456788888888899999
Q ss_pred HHHHHHHHHHHHCC-CCCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 262 KDGFEFYEKMQLNG-VSPSLYTYNCLI------HEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEA 334 (574)
Q Consensus 262 ~~a~~~~~~~~~~g-~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 334 (574)
..|..++++..+.. -.|+...+.-.. ....+.|..++|.+.+......-+. ....-.+-...+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhH
Confidence 99999998887654 245655553332 3345678888888877665443111 222233456678889999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHH-HHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHH
Q 043999 335 ERLLDQMKMAGISPNVITYNKLID-GFCDAGETDKAF-RLFNQLKSNGQSPSVVTYNVL-IRAFSKAGNSKMASDLVREM 411 (574)
Q Consensus 335 ~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m 411 (574)
..++..++.. .||..-|..... ++.+-.+.-++. .+|....+. .|-...-..+ ++......-.+....++..+
T Consensus 239 ~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 239 VKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred HHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence 9999999887 466666655444 443333333343 666666553 1111111111 11111223344455667777
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH----HHHHHCC----------CCCCHHH--HHHHHHHHHhcCCHHHHH
Q 043999 412 EERGITPSEVTYTILIDSFVRSDDMEKAFEMY----SLMQKSG----------FSPDVYT--YGVLIHGLCMKGNMKEAS 475 (574)
Q Consensus 412 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~~----------~~~~~~~--~~~li~~~~~~g~~~~A~ 475 (574)
.+.|+++ ++..+...|-.....+-..++. ..+...| -+|+... +-.++..+-+.|+++.|.
T Consensus 315 l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 315 LSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred hhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 7887764 3344443332222111111111 1111111 1455544 445677888999999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 476 KLFNSMWETKLEPN-DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 476 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
..++..++. .|+ +..|..=.+.+...|++++|..++++..+.+ .||...-..-+.-..++.+.++|.++.....+.
T Consensus 392 ~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 392 EYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 999998875 454 4456666788899999999999999998864 445544335556667788999999888887766
Q ss_pred CC
Q 043999 555 GL 556 (574)
Q Consensus 555 g~ 556 (574)
|.
T Consensus 469 ~~ 470 (700)
T KOG1156|consen 469 GF 470 (700)
T ss_pred cc
Confidence 54
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.8e-10 Score=101.95 Aligned_cols=422 Identities=13% Similarity=0.116 Sum_probs=223.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043999 116 HLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAF 195 (574)
Q Consensus 116 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 195 (574)
+....++..|+.+++.-...+-.....+-.-+..++...|++++|+..|..+.....++...+-.|.-.+.-.|.+.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 33455566666655544432211111122223344556666666666666555554445555555554444556666665
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 196 EVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNG 275 (574)
Q Consensus 196 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 275 (574)
.+-.+.. .++-....+++.-.+.|+-++...+.+.+.+ ...---+|.+.....-.+.+|++++.+.+..
T Consensus 112 ~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 112 SIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 5544322 1333344444555555555555555444432 1122233444444444556666666665543
Q ss_pred CCCCHhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCC----------------------
Q 043999 276 VSPSLYTYNCLI-HEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCK--EMR---------------------- 330 (574)
Q Consensus 276 ~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~~---------------------- 330 (574)
.|+-...|..+ -+|.+..-++-+.++++-.++.-+. +...-|.......+ .|+
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 23333333322 2344445555555555544443211 23333333322222 122
Q ss_pred -----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH--
Q 043999 331 -----------VQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRA-FS-- 396 (574)
Q Consensus 331 -----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~-- 396 (574)
-+.|++++-.+.+. -| ..--.|+-.|.+.+++++|..+..++.-. .|-......+..+ +.
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhh
Confidence 22333333332221 11 12234555678899999999887766421 2222222222211 11
Q ss_pred --hcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043999 397 --KAGNSKMASDLVREMEERGITPSE-VTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKE 473 (574)
Q Consensus 397 --~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 473 (574)
......-|.+.|+-.-+.+..-|. .--.++..++.-..++++.+..++.+...-...|...+ .+..+++..|++.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHH
Confidence 112233455555443333333332 22455666677778899999999888877544444444 57789999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 474 ASKLFNSMWETKLEPNDVVYN-MMIFGYCKEGNSYRALRLLGEMNEKGLVPNIAS-YSSTIGVLCQDGKWPEAEVLLNQM 551 (574)
Q Consensus 474 A~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m 551 (574)
|+++|-.+....++ |..+|. .|.++|.+.|+++.|.+++-++.. +.+..+ ...+.+-|.+.+.+--|.+.|+.+
T Consensus 412 aEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 412 AEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999887665545 556665 456788999999999887755533 223333 344557888999998888888888
Q ss_pred HHcCCCCCHHHH
Q 043999 552 LKLGLKPSVSLY 563 (574)
Q Consensus 552 ~~~g~~p~~~~~ 563 (574)
... .|+..-|
T Consensus 488 E~l--DP~pEnW 497 (557)
T KOG3785|consen 488 EIL--DPTPENW 497 (557)
T ss_pred Hcc--CCCcccc
Confidence 755 5665544
No 59
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.3e-09 Score=102.74 Aligned_cols=221 Identities=10% Similarity=0.072 Sum_probs=141.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHH--hc
Q 043999 111 SIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCC--EA 188 (574)
Q Consensus 111 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~--~~ 188 (574)
+=++.+.++|++++|.....+++..+ +-+...+..=+.++.+.+++++|+++.+.-......+.+. +=++|| +.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~---fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF---FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh---HHHHHHHHHc
Confidence 44567778999999999999999875 4467777778888999999999997776654322222222 234554 78
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHH
Q 043999 189 GDLNKAFEVLNQLEEMGFSPN-VVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFK-NGLQKDGFE 266 (574)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~ 266 (574)
+..|+|+..++- ..++ ..+...-...+.+.|++++|+++|+.+.+.+.. .+...+.+-+. .+-...+ +
T Consensus 93 nk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~-~ 162 (652)
T KOG2376|consen 93 NKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQV-Q 162 (652)
T ss_pred ccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhH-H
Confidence 999999999883 3333 346777778899999999999999999876543 22222211111 1101111 1
Q ss_pred HHHHHHHCCCCCCHhhHHH---HHHHHHhcCCHHHHHHHHHHHHhCC-------CC------CCH-HHHHHHHHHHHhcC
Q 043999 267 FYEKMQLNGVSPSLYTYNC---LIHEYCNEGKVSEGFKLFDEMRHRE-------VA------CNV-VTYNTLICGLCKEM 329 (574)
Q Consensus 267 ~~~~~~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~-------~~------~~~-~~~~~li~~~~~~~ 329 (574)
.+......| ..+|.. ....+...|++.+|+++++...+.+ -. -+. ..-..+...+...|
T Consensus 163 ---~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 ---LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred ---HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 122222233 223433 3445667899999999998873211 00 011 11223455677899
Q ss_pred CHHHHHHHHHHHHHCCCCCCh
Q 043999 330 RVQEAERLLDQMKMAGISPNV 350 (574)
Q Consensus 330 ~~~~A~~~~~~m~~~g~~~~~ 350 (574)
+.++|..+|...++.. ++|.
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~ 258 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADE 258 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCc
Confidence 9999999999988875 4454
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=6.9e-09 Score=102.67 Aligned_cols=430 Identities=13% Similarity=0.034 Sum_probs=214.3
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC--CCCCHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK--VELDVYSFGIL 181 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 181 (574)
.++.+|..|.-+..+.|+++.+.+.|++....- .-....|..+-..+...|.-..|+.+++..... .++|...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 356677777777777777777777777765432 224556666666777777766777777665444 24444444444
Q ss_pred HHHHHh-cCChhHHHHHHHHHHHC--CCC--CCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCh
Q 043999 182 IKGCCE-AGDLNKAFEVLNQLEEM--GFS--PNVVIYTSLIDGCCKN-----------GDIERAKMLFRKIGELGLVATQ 245 (574)
Q Consensus 182 i~~~~~-~g~~~~A~~~~~~m~~~--g~~--p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~ 245 (574)
-+.|.+ .|.++++++.-.+.... |.. .....|-.+.-+|... ....++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 444443 35556666555555441 110 1122333333333221 1123445555555444332 22
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043999 246 HTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGL 325 (574)
Q Consensus 246 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 325 (574)
.....+.--|...++.+.|.+..++..+-+...+...|..|.-.+...+++.+|+.+.+.....-.. |-.....-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhhh
Confidence 2222233334455556666666665555544445555555555555556666666655554432100 111111111111
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC---C
Q 043999 326 CKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSN--GQSPSVVTYNVLIRAFSKAG---N 400 (574)
Q Consensus 326 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g---~ 400 (574)
..-++.+++......+...= -+..... ..++-....+....+.-. ...-...++..+.......+ .
T Consensus 558 ~~~~~~e~~l~t~~~~L~~w--e~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALW--EAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhcccHHHHHHHHHHHHHHH--HhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 22344444444333332110 0000000 000011111111111000 01111223322222221111 1
Q ss_pred hHHHHHHHHHHHHCCCCC--C------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 043999 401 SKMASDLVREMEERGITP--S------EVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMK 472 (574)
Q Consensus 401 ~~~A~~~~~~m~~~~~~p--~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 472 (574)
.+.. +......| + ...|......+.+.+..++|...+.+..... +..+..|......+...|+.+
T Consensus 629 se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 629 SELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred cccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhH
Confidence 1111 22211112 2 1235556666777777777777777666542 455566666667777778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 473 EASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALR--LLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQ 550 (574)
Q Consensus 473 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 550 (574)
+|.+.|......++. ++....++...+.+.|+..-|.. ++.++++.+ +.+...|..+...+.+.|+.+.|...|+.
T Consensus 702 EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 702 EAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 888888877764322 45567777777778777666666 777777753 33567777888888888888888888877
Q ss_pred HHHc
Q 043999 551 MLKL 554 (574)
Q Consensus 551 m~~~ 554 (574)
..+.
T Consensus 780 a~qL 783 (799)
T KOG4162|consen 780 ALQL 783 (799)
T ss_pred HHhh
Confidence 7654
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=8.6e-10 Score=105.15 Aligned_cols=285 Identities=13% Similarity=0.052 Sum_probs=197.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 043999 207 SPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCL 286 (574)
Q Consensus 207 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 286 (574)
.-+........+-+...+++.+..++++.+.+..+ +....+..-|.++...|+..+-+.+=.++.+.- +....+|.++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 34566666677777788888888888888877653 355566666778888888777777777777652 3456778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 043999 287 IHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGET 366 (574)
Q Consensus 287 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 366 (574)
.--|.-.|+..+|++.|.+...-+.. -...|-.....|.-.+..|+|+..+..+.+. ++-....+--+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 88787788888888888876554332 3456777788888888888888888776553 111222233344556777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC----CCHhHHHHHHHHHHhcCCHHHHH
Q 043999 367 DKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEER--GIT----PSEVTYTILIDSFVRSDDMEKAF 440 (574)
Q Consensus 367 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~A~ 440 (574)
+.|.+.|.+.... .+.|+...+-+.-...+.+.+.+|...|+..... .+. .-..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 8888888877765 2346777777777777778888888888776521 011 13345677777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043999 441 EMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFG 499 (574)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 499 (574)
..+++.+... +.+..++.++.-.|...|+++.|.+.|.+.+- +.|+..+-..++..
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 8888777664 66777777777778888888888888887765 46666555555543
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=1.1e-10 Score=120.33 Aligned_cols=268 Identities=11% Similarity=0.077 Sum_probs=176.4
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHC
Q 043999 139 PRSNTFNSLLIFVIK-----SCSFDKGWLFFSENRCKVELDVYSFGILIKGCCE---------AGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 139 p~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~ 204 (574)
.+...|...+.+... .+..++|...|++.....|.+...|..+..++.. .+++++|...+++..+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 455555555554322 1335688888888887767777777777665542 24478888888888876
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 043999 205 GFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYN 284 (574)
Q Consensus 205 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 284 (574)
.. -+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|+..+++..+.... +...+.
T Consensus 334 dP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 42 25667777888888888888888888888877643 5667788888888888888888888888876322 222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 043999 285 CLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAG 364 (574)
Q Consensus 285 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 364 (574)
.++..+...|++++|...+++..+...+-++..+..+...+...|+.++|...++++.... +.+....+.+...|+..|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH
Confidence 4444566678888888888887765433355567777788888888888888888876541 223344455556666666
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043999 365 ETDKAFRLFNQLKSNG-QSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERG 415 (574)
Q Consensus 365 ~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 415 (574)
+.|...++.+.+.. ..+....+ +-..+.-.|+.+.+... +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 46777666665431 11221222 33334456666666655 7776653
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=7.3e-11 Score=108.13 Aligned_cols=200 Identities=12% Similarity=0.059 Sum_probs=138.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG 184 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 184 (574)
....+..+...|...|++++|.+.+++.++.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 35678888899999999999999999988764 33566777777888888888888888888776666677777778888
Q ss_pred HHhcCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 043999 185 CCEAGDLNKAFEVLNQLEEMGF-SPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKD 263 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 263 (574)
+...|++++|.+.+++..+... ......+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888776421 122345556666677777777777777776655422 34456666666666677777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 264 GFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMR 307 (574)
Q Consensus 264 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 307 (574)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666654 23344455555566666666666666655554
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=1.4e-08 Score=98.54 Aligned_cols=422 Identities=13% Similarity=0.093 Sum_probs=240.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043999 118 KSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEV 197 (574)
Q Consensus 118 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 197 (574)
.-|+-++|.+..+..++.++ -+.+.|..+.-.+....++++|++.|..+....+.|...|.-+.-.-++.|+++...+.
T Consensus 53 ~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 45777777777777766543 36677777777777777788888888877776677777777777666777777777777
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHH------HHHHhcCCHHHHHHHHHH
Q 043999 198 LNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELG-LVATQHTYTVLI------CGLFKNGLQKDGFEFYEK 270 (574)
Q Consensus 198 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~ 270 (574)
-.+..+.. +.....|..++.++.-.|+...|..+++...+.. -.|+...+.... ....+.|..++|++.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 77766642 2244567777777777788888888777776543 234544443332 234456677777766655
Q ss_pred HHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCC
Q 043999 271 MQLNGVSPSLY-TYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAE-RLLDQMKMAGISP 348 (574)
Q Consensus 271 ~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~g~~~ 348 (574)
-... ..|.. .-..-...+.+.+++++|..++..++.+.+. +...|-.+..++.+-.+.-++. .+|....+. .+.
T Consensus 211 ~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r 286 (700)
T KOG1156|consen 211 NEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPR 286 (700)
T ss_pred hhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccc
Confidence 4432 11222 2234456677788888888888888776443 3344444445554333333333 555555443 111
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCC---------
Q 043999 349 NVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREME----ERG--------- 415 (574)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~--------- 415 (574)
....-..=++......-.+..-+++..+.+.|+++-. ..+...|-.-...+-..++...+. ..|
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1111000111111122234444556666666655322 222222211111111111111111 111
Q ss_pred -CCCCHhHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 043999 416 -ITPSEVTY--TILIDSFVRSDDMEKAFEMYSLMQKSGFSPDV-YTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDV 491 (574)
Q Consensus 416 -~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 491 (574)
-+|....| -.++..+-+.|+++.|...++....+ .|+. ..|..=.+.+...|++++|..++++..+.+. ||..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~ 440 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRA 440 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHH
Confidence 13444333 34566777888888888888888765 5554 3555556778888888888888888877542 3444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 043999 492 VYNMMIFGYCKEGNSYRALRLLGEMNEKGLV--PN----IASYSST--IGVLCQDGKWPEAEVLLNQM 551 (574)
Q Consensus 492 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~~~~~l--~~~~~~~g~~~~A~~~~~~m 551 (574)
.-..-..-..++.+.++|.++.....+.|.. .+ .-.|-.+ ..+|.++|++.+|++=|...
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 3334555566778888888888887776531 01 0122222 24667777777776655544
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=2.1e-10 Score=118.10 Aligned_cols=267 Identities=16% Similarity=0.127 Sum_probs=191.5
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHH---------hcCCHHHHHHHHHHH
Q 043999 172 ELDVYSFGILIKGCCE-----AGDLNKAFEVLNQLEEMGFSPN-VVIYTSLIDGCC---------KNGDIERAKMLFRKI 236 (574)
Q Consensus 172 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~~ 236 (574)
+.+...|...+++-.. .+++++|.+.|++..+. .|+ ...|..+..++. ..+++++|...+++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 4555656555555322 24578999999999885 344 455666655544 234589999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 043999 237 GELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVV 316 (574)
Q Consensus 237 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 316 (574)
.+.++. +..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+..+. +..
T Consensus 331 l~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 331 TELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred HhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 988755 77888899999999999999999999999874 335667888999999999999999999999988665 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 043999 317 TYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPS-VVTYNVLIRAF 395 (574)
Q Consensus 317 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~ 395 (574)
.+..++..+...|++++|...++++.+...+-+...+..+...+...|+.++|...+.++... .|+ ....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 344455556778999999999999887642324555777888899999999999999988665 333 44455566667
Q ss_pred HhcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 396 SKAGNSKMASDLVREMEERG-ITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSG 450 (574)
Q Consensus 396 ~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 450 (574)
...| +.|...++++.+.. ..+....+ +-..+.-.|+-+.+... +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 47888777776531 12222223 33335556776666655 7776653
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=2e-08 Score=99.54 Aligned_cols=445 Identities=14% Similarity=0.076 Sum_probs=259.1
Q ss_pred hHHHHHHH-HHHhcCChHHHHHHHH----HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHH
Q 043999 107 RLYESIID-AHLKSRLSDQALFYFH----QMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGIL 181 (574)
Q Consensus 107 ~~~~~li~-~~~~~g~~~~A~~~~~----~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (574)
+.+..+|. .+.-..+.+++.-..- ++....+..|...|..+--++...|+++.+-+.|++.....-.....|+.+
T Consensus 284 ~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~ 363 (799)
T KOG4162|consen 284 VILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQL 363 (799)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHH
Confidence 34444443 3334455666654333 333333455777788888888888888888888888776645566778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH-HHHH-hcCCHHHHHHHHHHHHhC--CC--CCChhhHHHHHHHH
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLI-DGCC-KNGDIERAKMLFRKIGEL--GL--VATQHTYTVLICGL 255 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~ 255 (574)
...|...|.-..|..++++-......|+..+--.++ ..|. +.+.++++++.-.+..+. +. ......|-.+.-+|
T Consensus 364 als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y 443 (799)
T KOG4162|consen 364 ALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAY 443 (799)
T ss_pred HHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 888888888888888888765543234333333333 3333 346677777766666541 10 11233444444444
Q ss_pred Hhc-----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043999 256 FKN-----------GLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICG 324 (574)
Q Consensus 256 ~~~-----------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 324 (574)
... ....++++.+++..+.+.. |+.....+.--|+..++++.|.+...+..+-+..-+...|..+.-.
T Consensus 444 ~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALv 522 (799)
T KOG4162|consen 444 GFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALV 522 (799)
T ss_pred HhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 321 1234566777777665422 3333333444566677888888888888777666678888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043999 325 LCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMA 404 (574)
Q Consensus 325 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 404 (574)
+...+++.+|+.+.+...+.- .-|......-++.-...++.++++.....+... |... ....+.++-...
T Consensus 523 lSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~ 592 (799)
T KOG4162|consen 523 LSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKL 592 (799)
T ss_pred HhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhh
Confidence 888888888888887766541 112211112222233356666666555544331 1000 000111111222
Q ss_pred HHHHHHHHHC--CCCCCHhHHHHHHHHHH-hcC--CHHHHHHHHHHHHHCCC--CCC------HHHHHHHHHHHHhcCCH
Q 043999 405 SDLVREMEER--GITPSEVTYTILIDSFV-RSD--DMEKAFEMYSLMQKSGF--SPD------VYTYGVLIHGLCMKGNM 471 (574)
Q Consensus 405 ~~~~~~m~~~--~~~p~~~~~~~li~~~~-~~g--~~~~A~~~~~~~~~~~~--~~~------~~~~~~li~~~~~~g~~ 471 (574)
.++...+.-. ...-...++..+..-.. +.. ..+.. +.+... .|+ ...|......+.+.+..
T Consensus 593 ~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~ 666 (799)
T KOG4162|consen 593 LRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND 666 (799)
T ss_pred hhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc
Confidence 2222222110 01111223332222221 111 11111 222111 233 23455667778899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HH
Q 043999 472 KEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN-IASYSSTIGVLCQDGKWPEAEV--LL 548 (574)
Q Consensus 472 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~ 548 (574)
++|...+.+..... .-....|......+...|...+|.+.|..... +.|+ .....++...+.+.|+..-|.. ++
T Consensus 667 ~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 667 DEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred hHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 99999999887653 22667788888888999999999999999988 4554 5677889999999998877777 99
Q ss_pred HHHHHcCCCCC-HHHHHHHHhhhhcC
Q 043999 549 NQMLKLGLKPS-VSLYNILYRAKNNI 573 (574)
Q Consensus 549 ~~m~~~g~~p~-~~~~~~l~~~~~~~ 573 (574)
.++++. .|+ ...|-.|-..+-++
T Consensus 744 ~dalr~--dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 744 SDALRL--DPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred HHHHhh--CCCCHHHHHHHHHHHHHc
Confidence 999976 565 44666665554443
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=1.1e-09 Score=109.52 Aligned_cols=426 Identities=16% Similarity=0.119 Sum_probs=248.9
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILI 182 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 182 (574)
.||.++|..||.-|+..|+.+.|- +|.-|.-...+.+...++.++.+-...|+.+.+. .|-..+|..|.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------EPLADTYTNLL 90 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------CCchhHHHHHH
Confidence 356699999999999999999888 8888876666667778888888887888776654 56788999999
Q ss_pred HHHHhcCChhHHHHHHHH-HHH-------CCCCCCHH--------------hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043999 183 KGCCEAGDLNKAFEVLNQ-LEE-------MGFSPNVV--------------IYTSLIDGCCKNGDIERAKMLFRKIGELG 240 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~--------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 240 (574)
.+|...||+.. .+..++ |.. .|+-.... .-.+++....-.|-++.+++++..++...
T Consensus 91 ~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 91 KAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 99999998765 222222 221 12111011 11223333444555666666665553321
Q ss_pred CCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043999 241 LVATQHTYTVLICGLFKN-GLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYN 319 (574)
Q Consensus 241 ~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 319 (574)
... .+...++-+... ..+++-..+.....+ .|+..+|..+++.-...|+++.|..++.+|.++|.+.+..-|.
T Consensus 170 ~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 170 WNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred ccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 111 111112222222 223333333333332 5889999999999999999999999999999999998888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH------------------------HHHHHHH
Q 043999 320 TLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDK------------------------AFRLFNQ 375 (574)
Q Consensus 320 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~------------------------A~~~~~~ 375 (574)
.++-+ .+....++.+++-|.+.|+.|+..|+...+-.+.+.|.... |.+.++.
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 88877 78888888899999999999999988665554444322111 1111111
Q ss_pred ------------HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC-CHhHHHHHHHHHHhcCC-----
Q 043999 376 ------------LKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERG--ITP-SEVTYTILIDSFVRSDD----- 435 (574)
Q Consensus 376 ------------~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p-~~~~~~~li~~~~~~g~----- 435 (574)
..-.|+.-....|...+. ...+|+-++..++...|.... ..+ ++..|..++.-|.+.-+
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 111133323344443333 233666666666666654221 111 22233333333322111
Q ss_pred -----------------HHHHHHHHHHHHH----------------CCCC-------CCHHHHHHHHHHHHhcCCHHHHH
Q 043999 436 -----------------MEKAFEMYSLMQK----------------SGFS-------PDVYTYGVLIHGLCMKGNMKEAS 475 (574)
Q Consensus 436 -----------------~~~A~~~~~~~~~----------------~~~~-------~~~~~~~~li~~~~~~g~~~~A~ 475 (574)
..+..+....... ..+. +-...-+.++..++..-+..+++
T Consensus 400 ~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l 479 (1088)
T KOG4318|consen 400 RIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKIL 479 (1088)
T ss_pred HHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111100 0000 01112334455555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 476 KLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEK--GLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 476 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
..-+..... .- ...|..||+-++...+.+.|..+.++.... .+..|..-+..+.+.+.+.+....+.++++++.+
T Consensus 480 ~~~ekye~~-lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 480 CDEEKYEDL-LF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHHHHHHHH-Hh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 433333221 11 156788888888888888888888877543 2334556677888888888888888888888875
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=2.7e-11 Score=107.28 Aligned_cols=232 Identities=13% Similarity=0.074 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHh
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCE 187 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 187 (574)
--+.+.++|.+.|.+.+|...|+..++. .|-+.||..|-.+|.+..+...|+.+|.+-.+.+|.|+....-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3367788888889988888888888775 45667787888888888888888888888888888888888888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043999 188 AGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEF 267 (574)
Q Consensus 188 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 267 (574)
.++.++|.+++++..+.. +.++.....+...|.-.++.+-|+..|+++.+.|+. ++..|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 888888888888887753 235666777777788888888888888888888876 777888888888888888888888
Q ss_pred HHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 268 YEKMQLNGVSPS--LYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMA 344 (574)
Q Consensus 268 ~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 344 (574)
|.+.+..--.|+ ...|..+.......|++..|.+.|+-.+..+.. +...+|.|.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887775433343 335666666667778888888888877766544 5667777777777788888888887776654
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=3.1e-10 Score=103.97 Aligned_cols=198 Identities=13% Similarity=0.024 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043999 141 SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGC 220 (574)
Q Consensus 141 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 220 (574)
...+..+...+...|++++|...+++.....|.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 34445555666666666666666666555445555666666666666666666666666665543 22344555555566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 043999 221 CKNGDIERAKMLFRKIGELGLV-ATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEG 299 (574)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 299 (574)
...|++++|.+.+++..+.... .....+..+...+...|++++|.+.+.+..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666665543211 122334444445555555555555555544432 11233444444445555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 300 FKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQM 341 (574)
Q Consensus 300 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 341 (574)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555544443 1223333334444444444444444444443
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=6.7e-08 Score=87.07 Aligned_cols=393 Identities=10% Similarity=0.045 Sum_probs=246.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcC
Q 043999 110 ESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAG 189 (574)
Q Consensus 110 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 189 (574)
.-+..++.+.|++++|+..|.-+.+.. .|+...+-.|.-+..-.|.+.+|..+-....+ ++-.-..|...-.+.|
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhC
Confidence 346678889999999999999987754 45666666677777788999999988877654 4444455556666777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCCHHHHHHHH
Q 043999 190 DLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVL-ICGLFKNGLQKDGFEFY 268 (574)
Q Consensus 190 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~ 268 (574)
+-++-....+.+.. ...---+|.......-.+.+|++++.+....+ |.-...|.- .-+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 77777776666654 22334455555556667889999999887654 334444443 34667777778788877
Q ss_pred HHHHHCCCCCCH-hhHHHHHHHHHh--cCCHH---------------------------------HHHHHHHHHHhCCCC
Q 043999 269 EKMQLNGVSPSL-YTYNCLIHEYCN--EGKVS---------------------------------EGFKLFDEMRHREVA 312 (574)
Q Consensus 269 ~~~~~~g~~p~~-~~~~~li~~~~~--~g~~~---------------------------------~A~~~~~~m~~~~~~ 312 (574)
.-.++. -||. ...|.......+ .|+.. .|++++-.+.+.
T Consensus 209 ~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--- 283 (557)
T KOG3785|consen 209 KVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--- 283 (557)
T ss_pred HHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---
Confidence 776654 3343 333333322222 12221 122222111111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043999 313 CNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDG-----FCDAGETDKAFRLFNQLKSNGQSPSVVT 387 (574)
Q Consensus 313 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 387 (574)
-+..--.++-.|.+++++.+|..+.+++.-. .|-......+..+ ......+.-|...|+..-+++..-|...
T Consensus 284 -IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp 360 (557)
T KOG3785|consen 284 -IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP 360 (557)
T ss_pred -ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc
Confidence 1223344556688999999999988776421 3333322222221 1222345566666666655544433322
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043999 388 -YNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLC 466 (574)
Q Consensus 388 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 466 (574)
-.++...+.-..++++.+-.++.....-.. |...--.+.++++..|.+.+|.++|-.+....++.+..-...|..+|.
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYI 439 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH
Confidence 344556666677888888888888765333 333344577899999999999999988765544444444456778999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043999 467 MKGNMKEASKLFNSMWETKLEPNDVVY-NMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASY 528 (574)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 528 (574)
++++.+.|++++-++-. ..+..+. ..+.+-|.+.+.+--|.+.|+.+.. ..|++..|
T Consensus 440 ~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred hcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 99999999887766532 2233333 3445678889999888899988877 45666655
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=2.4e-10 Score=101.34 Aligned_cols=228 Identities=14% Similarity=0.063 Sum_probs=139.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHh
Q 043999 319 NTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTY-NVLIRAFSK 397 (574)
Q Consensus 319 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~ 397 (574)
+.+..+|.+.|.+.+|.+.++.-++. .|-+.||..|-..|.+..+++.|+.++.+-.+. .|-.+|| ..+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 44566666666666666666666554 344555666666666666677776666666554 3333333 334455556
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043999 398 AGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKL 477 (574)
Q Consensus 398 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 477 (574)
.++.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+++...| ..++..|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 666667777776666552 2244455555556666667777777777777666 34566666666666666677777766
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 478 FNSMWETKLEPN--DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 478 ~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
|++....--.|+ ..+|-.+.......|++..|.+.|+-.+..+ ..+...++.+.-.-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 666665433333 3456566666666677777777777666542 22445666666666667777777777766653
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=5.2e-12 Score=83.22 Aligned_cols=49 Identities=37% Similarity=0.651 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHhhhh
Q 043999 523 PNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYRAKN 571 (574)
Q Consensus 523 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 571 (574)
||..+|++++++|++.|++++|.++|++|.+.|+.||..||++++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5556666666666666666666666666666666666666666666554
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=4.9e-12 Score=83.36 Aligned_cols=50 Identities=34% Similarity=0.788 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043999 173 LDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCK 222 (574)
Q Consensus 173 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 222 (574)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=1.4e-08 Score=101.16 Aligned_cols=293 Identities=13% Similarity=0.079 Sum_probs=186.1
Q ss_pred HHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----
Q 043999 148 LIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKN---- 223 (574)
Q Consensus 148 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 223 (574)
...+...|++++|++.+++-...+.............+.+.|+.++|..++..+++.+. .|..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccc
Confidence 34556777777777777776555555666677777777778888888888888777652 2333444444444222
Q ss_pred -CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043999 224 -GDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQK-DGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFK 301 (574)
Q Consensus 224 -g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 301 (574)
.+.+...++++++...- |...+...+.-.+.....+. .+..++..++..|++ .+++.+-..|....+..-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 24666677777776543 22222222221222222222 344556666777754 345555555554545544555
Q ss_pred HHHHHHhC--------------CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 043999 302 LFDEMRHR--------------EVACNV--VTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGE 365 (574)
Q Consensus 302 ~~~~m~~~--------------~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 365 (574)
++...... .-+|.. .++..+...|...|++++|+.+++..++.. |..+..|..-...+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 55554322 112333 244556677788999999999999988873 3336677788888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH--------HHHHHHHHHhcCCHH
Q 043999 366 TDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVT--------YTILIDSFVRSDDME 437 (574)
Q Consensus 366 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--------~~~li~~~~~~g~~~ 437 (574)
+++|.+.++...+.+.. |...-+..+..+.+.|+.++|.+++....+.+..|.... ......+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999998887543 666667777888899999999999888877654332211 234466788889988
Q ss_pred HHHHHHHHHHH
Q 043999 438 KAFEMYSLMQK 448 (574)
Q Consensus 438 ~A~~~~~~~~~ 448 (574)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887766643
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=2e-08 Score=100.02 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=44.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhc---
Q 043999 218 DGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTY-NCLIHEYCNE--- 293 (574)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~li~~~~~~--- 293 (574)
..+...|++++|++.+++-.+. +.............+.+.|+.++|..+++.+++.+ |+...| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4455666666666666554332 22123334445566666666666666666666653 333333 3333333111
Q ss_pred --CCHHHHHHHHHHHHhC
Q 043999 294 --GKVSEGFKLFDEMRHR 309 (574)
Q Consensus 294 --g~~~~A~~~~~~m~~~ 309 (574)
...+...++++++...
T Consensus 89 ~~~~~~~~~~~y~~l~~~ 106 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK 106 (517)
T ss_pred ccccHHHHHHHHHHHHHh
Confidence 1345555555555544
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=9.3e-07 Score=81.57 Aligned_cols=288 Identities=12% Similarity=0.046 Sum_probs=167.4
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 258 NGLQKDGFEFYEKMQLN-GVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAER 336 (574)
Q Consensus 258 ~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 336 (574)
.++...+...+-.+... -++.|+.....+.+.+...|+.++|+..|++....++. +..........+.+.|++++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 34444444433333222 24556667777777777777777777777776655221 22222223334456777777777
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 043999 337 LLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGI 416 (574)
Q Consensus 337 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 416 (574)
+...+.... +.....|-.-.......++++.|+.+-++.+.... .+...|-.-...+...|++++|.-.|+..+...
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 776665432 11222222223333455667777777777666422 133444444455667777777777777766542
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 043999 417 TPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLI-HGLC-MKGNMKEASKLFNSMWETKLEPN-DVVY 493 (574)
Q Consensus 417 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 493 (574)
+-+...|..|+.+|...|++.+|.-.-+...+. ++.+..+.+.+. ..+. ...--++|.+++++.+.. .|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 235667777777777777777777666555443 233444443331 1121 222246677777766653 444 3345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 494 NMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 494 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
+.+...+...|+.+.++.++++.+. ..||....+.+.+.+...+.+.+|...|...+..
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5566666777777777777777776 3567777777777777777777777777777643
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5e-07 Score=83.29 Aligned_cols=403 Identities=14% Similarity=0.050 Sum_probs=261.7
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHcccCCCCCHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCS-FDKGWLFFSENRCKVELDVYSFGIL 181 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l 181 (574)
+.+...-...+.+|...++-+.|+....+....- ...--|.++.-+.+.|. -.++.--+.+.....+. ....
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~---aL~~- 166 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM---ALQV- 166 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcch---HHHH-
Confidence 4556666678889999999999998766554321 12223444444444432 22222222222221111 1111
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--cCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhc
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCK--NGDIERAKMLFRKIGELG-LVATQHTYTVLICGLFKN 258 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~ 258 (574)
|.+..+.+ +..+...=..|.....+|+..+...-+.+++. .++-..|...+-.+.... +.-++.....+..++...
T Consensus 167 i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 167 IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 11111110 01111111123333345555555555555443 455555655555554433 344677888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043999 259 GLQKDGFEFYEKMQLNGVSPSLY-TYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERL 337 (574)
Q Consensus 259 g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 337 (574)
|+.++|+..|++.... .|+.. ......-.+.+.|+.+.-..+...+....-. ....|-.-........+++.|+.+
T Consensus 246 Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred cCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHH
Confidence 9999999999998865 33332 2333344556788888888887777654211 334454445555668889999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043999 338 LDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGIT 417 (574)
Q Consensus 338 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 417 (574)
-+..++.. +.+...+-.-...+...+++++|.-.|+..+..- +-+...|..|+..|...|++.+|..+-+...+. +.
T Consensus 323 ~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~ 399 (564)
T KOG1174|consen 323 VEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQ 399 (564)
T ss_pred HHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hh
Confidence 98888764 3345555555677888999999999999988752 247889999999999999999999888776654 33
Q ss_pred CCHhHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043999 418 PSEVTYTILI-DSFVR-SDDMEKAFEMYSLMQKSGFSPD-VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYN 494 (574)
Q Consensus 418 p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 494 (574)
.+..+.+.+. ..+.. ..--++|.++++...+. .|+ ....+.+...+...|+.+.++.+++..+. ..||....+
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~ 475 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHN 475 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHH
Confidence 3555555553 23322 23348899999988775 455 34667778888999999999999999886 378999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043999 495 MMIFGYCKEGNSYRALRLLGEMNEKGLVPNI 525 (574)
Q Consensus 495 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 525 (574)
.|.+.+...+.+++|++.|...+.. .|+.
T Consensus 476 ~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 476 HLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 9999999999999999999999884 4543
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=4.7e-09 Score=103.18 Aligned_cols=249 Identities=21% Similarity=0.208 Sum_probs=154.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CH
Q 043999 320 TLICGLCKEMRVQEAERLLDQMKMA-----G-ISPNVIT-YNKLIDGFCDAGETDKAFRLFNQLKSN-----GQ-SP-SV 385 (574)
Q Consensus 320 ~li~~~~~~~~~~~A~~~~~~m~~~-----g-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~-~~-~~ 385 (574)
.+...|...|+++.|+.++++..+. | ..|...+ .+.+...|...+++++|..+|+++... |- .| -.
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444555555555555555444332 1 0122222 223555666667777776666666432 11 11 12
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC-
Q 043999 386 VTYNVLIRAFSKAGNSKMASDLVREMEER-----GI-TPSE-VTYTILIDSFVRSDDMEKAFEMYSLMQKS---GFSPD- 454 (574)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~- 454 (574)
.+++.|...|++.|++++|...+++..+. |. .|.. ..++.+...++..+++++|..+++...+. -+.++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 34555556677777777766666654421 11 1222 22555666778888888888888766432 11222
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C
Q 043999 455 ---VYTYGVLIHGLCMKGNMKEASKLFNSMWETK----L--EP-NDVVYNMMIFGYCKEGNSYRALRLLGEMNEK----G 520 (574)
Q Consensus 455 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g 520 (574)
..+++.|...|.+.|++++|.+++++++... - .+ ....++.|...|.+.+++.+|.++|.+...- |
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 3578889999999999999999999987541 1 11 2456788888999999999999888875432 2
Q ss_pred C-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c---CCCCCHHHHHHHHh
Q 043999 521 L-VPN-IASYSSTIGVLCQDGKWPEAEVLLNQMLK---L---GLKPSVSLYNILYR 568 (574)
Q Consensus 521 ~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~---g~~p~~~~~~~l~~ 568 (574)
. .|+ ..+|..|..+|.+.|++++|.++.+.... . +..|+.........
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA 499 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence 1 123 36888999999999999999999988862 1 34556555554443
No 79
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.24 E-value=1.8e-07 Score=95.22 Aligned_cols=449 Identities=14% Similarity=0.028 Sum_probs=259.8
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHH
Q 043999 102 PVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGV-RPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGI 180 (574)
Q Consensus 102 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 180 (574)
+..+...+-.+.+.|.+..+++.|..+.-..-+... ..-...|....-.+.+.++...|...|+......|.|...|..
T Consensus 522 Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~g 601 (1238)
T KOG1127|consen 522 DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLG 601 (1238)
T ss_pred CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHH
Confidence 456778889999999999999999988433322210 0112334445556778899999999999988888889999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCChhhHHHHHH
Q 043999 181 LIKGCCEAGDLNKAFEVLNQLEEMGFSPNVV-IYTSLIDGCCKNGDIERAKMLFRKIGEL------GLVATQHTYTVLIC 253 (574)
Q Consensus 181 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~li~ 253 (574)
++.+|.+.|++..|.++|.+.... .|+.. .---.....|..|++.+|...+..+... +..--..++..+..
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ak 679 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAK 679 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999999999999988774 34432 2222334567789999999988877532 11112334444445
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 254 GLFKNGLQKDGFEFYEKMQLN-------GVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLC 326 (574)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 326 (574)
.+.-.|-..++.+++++-++. ....+...|..+ ..|..+|-... .. .|+......+..-.-
T Consensus 680 d~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e 747 (1238)
T KOG1127|consen 680 DSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLE 747 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHH
Confidence 555566666666666654432 111111122111 12233333332 11 222222222222122
Q ss_pred hcCCH---H---HHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043999 327 KEMRV---Q---EAERLLDQMKMAGISPNVITYNKLIDGFCD----A----GETDKAFRLFNQLKSNGQSPSVVTYNVLI 392 (574)
Q Consensus 327 ~~~~~---~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~~~~~g~~~~~~~~~~li 392 (574)
..+.. + -+.+.+-.-.+. ..+..+|..|+..|.+ . .+...|+..+.+.++.. ..+..+|+.|.
T Consensus 748 ~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG 824 (1238)
T KOG1127|consen 748 KTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALG 824 (1238)
T ss_pred hcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH
Confidence 22211 1 111222111111 2234455555444433 1 22346777777776642 33667777765
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 043999 393 RAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMK 472 (574)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 472 (574)
-. ...|.+.-|...|-+-.... +....+|..+.-.+.+..+++.|...|...+... +.+...|--........|+.-
T Consensus 825 Vl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii 901 (1238)
T KOG1127|consen 825 VL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRII 901 (1238)
T ss_pred Hh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHH
Confidence 55 55677777777776655442 3356677777777888888888888888887754 445555555544555677777
Q ss_pred HHHHHHHHH--Hh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------HHCCCCCCHHHHHHHHHHHHhc
Q 043999 473 EASKLFNSM--WE--TKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEM----------NEKGLVPNIASYSSTIGVLCQD 538 (574)
Q Consensus 473 ~A~~~~~~~--~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~g~~p~~~~~~~l~~~~~~~ 538 (574)
++..+|..- .. .|-.|+..-|-.........|+.++-+...+++ .. +.+.+...|......+-+.
T Consensus 902 ~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL 980 (1238)
T KOG1127|consen 902 ERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHL 980 (1238)
T ss_pred HHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHH
Confidence 777777762 22 233344444444444445566655544433332 22 2444557787888888888
Q ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHhhhh
Q 043999 539 GKWPEAEVLLNQMLK-LGLKPSVSLYNILYRAKN 571 (574)
Q Consensus 539 g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~ 571 (574)
+.+.+|.....+.+. ...+-|..+|+.+..-+.
T Consensus 981 ~ey~~a~ela~RliglLe~k~d~sqynvak~~~g 1014 (1238)
T KOG1127|consen 981 EEYRAALELATRLIGLLELKLDESQYNVAKPDAG 1014 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 888888887777652 112456666665544433
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.24 E-value=3.2e-07 Score=82.50 Aligned_cols=310 Identities=9% Similarity=0.041 Sum_probs=160.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhcC
Q 043999 146 SLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVI-YTSLIDGCCKNG 224 (574)
Q Consensus 146 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g 224 (574)
-+...+...|++.+|+..|....+..|.+-.++..-...|...|+-..|+.=+.+.++. +||-.. -..-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 34455556666666666666666554444455555556677777777777777777663 566432 222345567778
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043999 225 DIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFD 304 (574)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 304 (574)
.+++|..-|+..++..+. . |...++.+-+....+ .......+..+...|+...|+....
T Consensus 121 ele~A~~DF~~vl~~~~s--~-------------~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPS--N-------------GLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred cHHHHHHHHHHHHhcCCC--c-------------chhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHH
Confidence 888888888777765432 1 111111111111110 0111122333444666666776666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043999 305 EMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPS 384 (574)
Q Consensus 305 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 384 (574)
.+++..+. |...|..-..+|...|.+..|+.=++...+.. .-++.++--+-..+...|+.+.++...++..+. .||
T Consensus 180 ~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpd 255 (504)
T KOG0624|consen 180 HLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPD 255 (504)
T ss_pred HHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccc
Confidence 66665444 66666666667777777777766666655543 224444445555666677777777777666654 444
Q ss_pred HHHHHHHH-------------HHHHhcCChHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 385 VVTYNVLI-------------RAFSKAGNSKMASDLVREMEERGITPSEVT---YTILIDSFVRSDDMEKAFEMYSLMQK 448 (574)
Q Consensus 385 ~~~~~~li-------------~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~ 448 (574)
...+-..- ......++|.+++.-.+...+.......+. +..+-.++...+++.+|++.-.+++.
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 43221111 111233444444444444443322211111 22333444455555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 449 SGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWE 483 (574)
Q Consensus 449 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 483 (574)
.. +.|+.++.--..+|.-...++.|+.-|+.+.+
T Consensus 336 ~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 336 ID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 32 22244555555555555555555555555554
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.8e-06 Score=88.24 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 386 VTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGL 465 (574)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 465 (574)
..|+.+..+-.+.|...+|++-|-+. -|+..|.-+++...+.|.+++-.+++...++...+|.+. +.|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 34555555555555555554444322 144556666666666666666666665555544344333 3555566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043999 466 CMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAE 545 (574)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 545 (574)
++.+++.+-+++.. .||......+.+-|...|.++.|.-++.. ...|..+...+...|.+..|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHH
Confidence 66666555444332 34444455555555555555555444432 223444555555555555554
Q ss_pred HH
Q 043999 546 VL 547 (574)
Q Consensus 546 ~~ 547 (574)
..
T Consensus 1241 D~ 1242 (1666)
T KOG0985|consen 1241 DA 1242 (1666)
T ss_pred HH
Confidence 44
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=3.6e-09 Score=104.00 Aligned_cols=242 Identities=17% Similarity=0.132 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDS-----GV-RPRSNT-FNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFG 179 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (574)
.+...|...|...|+++.|..+|.+.++. |. .|...+ .+.+...|...+++++|..+|+++...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 45555888888888888888888877653 10 122221 122334444455555555444443321
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCh-hhHHH
Q 043999 180 ILIKGCCEAGDLNKAFEVLNQLEEMGF-SPN-VVIYTSLIDGCCKNGDIERAKMLFRKIGEL-----GL-VATQ-HTYTV 250 (574)
Q Consensus 180 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~ 250 (574)
++.. .|- .|. ..+++.|...|++.|++++|...+++..+. +. .|.+ ..++.
T Consensus 271 ------------------~e~~--~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 271 ------------------REEV--FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred ------------------HHHh--cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 0000 110 111 223444444555555555554444443210 11 1111 12344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCHH
Q 043999 251 LICGLFKNGLQKDGFEFYEKMQLN---GVSPS----LYTYNCLIHEYCNEGKVSEGFKLFDEMRHRE-------VACNVV 316 (574)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~~~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~ 316 (574)
++..++..+++++|..++....+. -+.++ ..+++.|...|.+.|++++|.++|+++.... ..-...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 455556666666666665544321 11111 2467777888888888888888887765431 111234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 317 TYNTLICGLCKEMRVQEAERLLDQMKM----AGI--SPNVITYNKLIDGFCDAGETDKAFRLFNQLK 377 (574)
Q Consensus 317 ~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 377 (574)
.++.+...|.+.+++++|.++|.+... .|. +-...+|..|...|.+.|++++|.++.+.+.
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 566777777778888877777776432 221 2224567778888888888888888777665
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=1.7e-08 Score=95.21 Aligned_cols=218 Identities=13% Similarity=0.001 Sum_probs=131.3
Q ss_pred CChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043999 120 RLSDQALFYFHQMLDSG-VRPR--SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFE 196 (574)
Q Consensus 120 g~~~~A~~~~~~~~~~g-~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 196 (574)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++.....|.+..+|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777777776532 1121 33466666677777888888888877777667777788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043999 197 VLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGV 276 (574)
Q Consensus 197 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~ 276 (574)
.|++..+... -+..++..+...+...|++++|.+.|++..+.++. ..............++.++|.+.|.+.....
T Consensus 120 ~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 8888776432 13556777777777788888888888877765432 2111222222344567778887776654331
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 277 SPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR---EVA---CNVVTYNTLICGLCKEMRVQEAERLLDQMKMAG 345 (574)
Q Consensus 277 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 345 (574)
.|+...+ .+. ....|+..++ +.++.+.+. .+. .....|..+...+.+.|++++|+..|++..+.+
T Consensus 196 ~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2232221 222 2234554443 233333321 110 023456677777777777777777777777654
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=1.2e-07 Score=93.10 Aligned_cols=201 Identities=15% Similarity=0.057 Sum_probs=131.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHH-HHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGV-RPRSNTF-NSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILI 182 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 182 (574)
..-.|..+...+...|+++.+...+.+..+... .++.... ......+...|++++|.+.+++.....|.|...+.. .
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-H 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-h
Confidence 345677777888888888888777777665421 1222222 222334567889999999998887776667666653 2
Q ss_pred HHHHh----cCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043999 183 KGCCE----AGDLNKAFEVLNQLEEMGFSPN-VVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFK 257 (574)
Q Consensus 183 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 257 (574)
..+.. .+..+.+.+.++.. .+..|+ ......+...+...|++++|.+.+++..+..+. +...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 23333 34445555555441 112233 334445666778888899999888888876543 56677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 258 NGLQKDGFEFYEKMQLNGV-SPSL--YTYNCLIHEYCNEGKVSEGFKLFDEMRHR 309 (574)
Q Consensus 258 ~g~~~~a~~~~~~~~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 309 (574)
.|++++|..++++...... .|+. ..|..+...+...|++++|..++++....
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 8888888888888776432 1222 23456777788888888888888887543
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.7e-06 Score=82.26 Aligned_cols=445 Identities=15% Similarity=0.109 Sum_probs=248.5
Q ss_pred hccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 043999 58 MSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGV 137 (574)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 137 (574)
...+.+++|.....+++... +.+...+..=+.+..+.+++++|+.+.+.-....
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~-------------------------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~- 76 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIV-------------------------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL- 76 (652)
T ss_pred ccchHHHHHHHHHHHHHhcC-------------------------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-
Confidence 33677777777766665332 2334445555666778888999886544322100
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHhHHHH
Q 043999 138 RPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSP-NVVIYTSL 216 (574)
Q Consensus 138 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 216 (574)
.-+.+.|. =..+..+.+..++|++.++... +.+..+...-...+.+.|++++|+++++.+.+.+.+- +...-..+
T Consensus 77 ~~~~~~fE-KAYc~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl 152 (652)
T KOG2376|consen 77 VINSFFFE-KAYCEYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANL 152 (652)
T ss_pred hcchhhHH-HHHHHHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 00111111 1223347888999988888333 3455677777788889999999999999987764321 11111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHh-----
Q 043999 217 IDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVL---ICGLFKNGLQKDGFEFYEKMQLNG-------VSPSLY----- 281 (574)
Q Consensus 217 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~g-------~~p~~~----- 281 (574)
+.+-. .-.+- +.+.. ...| ..+|..+ ...+...|++.+|+++++...+.+ -.-+..
T Consensus 153 ~a~~a----~l~~~-~~q~v---~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 153 LAVAA----ALQVQ-LLQSV---PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred HHHHH----hhhHH-HHHhc---cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 11110 01111 12221 1122 3344443 345667899999999988873211 010111
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHHHHHCCC--------
Q 043999 282 --TYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVV----TYNTLICGLCKEMRVQ-EAERLLDQMKMAGI-------- 346 (574)
Q Consensus 282 --~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~-~A~~~~~~m~~~g~-------- 346 (574)
.-.-+.-.+-..|+-.+|.+++...++..+. |.. .-|.++..-....-++ .++..++.......
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls 302 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS 302 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 1123455677889999999999999887654 432 2233332211111111 22222222211100
Q ss_pred --CCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHh
Q 043999 347 --SPNVITY-NKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFS--KAGNSKMASDLVREMEERGITPSEV 421 (574)
Q Consensus 347 --~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~ 421 (574)
....... +.++.+| .+..+.+.+.-..... -.|. ..+..++..+. +...+..+..++...-+....-...
T Consensus 303 ~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~ 377 (652)
T KOG2376|consen 303 KKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKV 377 (652)
T ss_pred HHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHH
Confidence 0011111 2233333 2344444444433322 1233 33344444332 2235677777777776653333345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH
Q 043999 422 TYTILIDSFVRSDDMEKAFEMYS--------LMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWET--KLEPNDV 491 (574)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~ 491 (574)
+.-..+......|+++.|.+++. .+.+.+..| .+...+...+.+.++.+.|..++.+.+.. .-.+...
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 56667777889999999999998 555555444 45566777788888877777777776642 1112222
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 492 ----VYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQM 551 (574)
Q Consensus 492 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 551 (574)
++..+...-.+.|+-++|..+++++.+. -++|..+...++.+|++. +.+.|..+-+++
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 3333444445679999999999999996 366888888999999874 567777766555
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.6e-07 Score=89.60 Aligned_cols=98 Identities=12% Similarity=-0.020 Sum_probs=64.3
Q ss_pred CHHHHHHHHHhhCCCCCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043999 84 TPRSLLCHLTQLFPSSSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLF 163 (574)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 163 (574)
.+...+..++... ...|+|.+.|..=..+|.+.|++++|++--.+-++.. +-..-.|+....++.-.|++++|+.-
T Consensus 17 d~~~ai~~~t~ai---~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 17 DFETAIRLFTEAI---MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cHHHHHHHHHHHH---ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHH
Confidence 3444444444432 2345577777777777777777777777666666542 12356677777777777777777777
Q ss_pred HHHcccCCCCCHHHHHHHHHHH
Q 043999 164 FSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 164 ~~~~~~~~~~~~~~~~~li~~~ 185 (574)
|.+-+...+.|...++-+..++
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhh
Confidence 7777766667777777777666
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=2.9e-08 Score=93.63 Aligned_cols=217 Identities=12% Similarity=-0.021 Sum_probs=135.1
Q ss_pred CChhHHHHHHHHcccCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 043999 155 CSFDKGWLFFSENRCKVE----LDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAK 230 (574)
Q Consensus 155 g~~~~A~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 230 (574)
++.+.++..+.++....+ .....|..+...|.+.|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 455666666666665322 2245577788888888888888888888887542 35678888888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043999 231 MLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHRE 310 (574)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 310 (574)
..|++..+..+. +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|++.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888888776543 4567777778888888888888888888765 3333222222222344667888888886654332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 311 VACNVVTYNTLICGLCKEMRVQEAERLLDQMKMA---GI---SPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNG 380 (574)
Q Consensus 311 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 380 (574)
.|+...+ .+.. ...|+..++ ..++.+.+. .+ +.....|..+...+.+.|++++|...|++..+.+
T Consensus 196 -~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222222 2222 224444333 233333321 00 1123456667777777777777777777777653
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=2.6e-08 Score=84.71 Aligned_cols=196 Identities=12% Similarity=-0.041 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCC 186 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 186 (574)
.+...|.-.|.+.|++..|..-+++.++.+ +.+..+|..+...|.+.|..+.|.+-|++.....|.+....|.....+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 456777888888888888888888888875 2245667777777777788888877777777766677777777777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043999 187 EAGDLNKAFEVLNQLEEMGFSP-NVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGF 265 (574)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (574)
..|++++|...|++......-+ -..+|..+.-+..+.|+++.|.+.|++..+.... ...+.-.+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 7777777777777777642111 2346666666666777777777777776665433 3445555556666666666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 266 EFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDE 305 (574)
Q Consensus 266 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 305 (574)
.+++.....+. ++..+.-..|+.--..|+.+.+-+.=..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 66666655543 4555555555555555555555444333
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.17 E-value=4.2e-07 Score=89.16 Aligned_cols=199 Identities=10% Similarity=0.021 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 043999 174 DVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGF-SPNV-VIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVL 251 (574)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 251 (574)
....|..+...+...|+.+.+.+.+.+..+... .++. .........+...|++++|.+.+++..+..+. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 344455555555555555555555444433211 1111 11112223344566666666666666554322 2223221
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 252 ICGLFK----NGLQKDGFEFYEKMQLNGVSPS-LYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLC 326 (574)
Q Consensus 252 i~~~~~----~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 326 (574)
...+.. .+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++..+..+. +...+..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 111222 23333333333321 111222 223334445556666666666666666665433 4555566666666
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 327 KEMRVQEAERLLDQMKMAGI-SPNV--ITYNKLIDGFCDAGETDKAFRLFNQLK 377 (574)
Q Consensus 327 ~~~~~~~A~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 377 (574)
..|++++|...+++...... .|+. ..|..+...+...|++++|..++++..
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666666666554321 1121 223345566666666666666666654
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.2e-05 Score=82.36 Aligned_cols=413 Identities=16% Similarity=0.175 Sum_probs=211.6
Q ss_pred ccchhhHHHHHHHhccCChHH-HHHHHHHHhhCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCH
Q 043999 7 GEGQALTLNLISRMAKLPPLK-AFSLFNWASRQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTP 85 (574)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 85 (574)
-+|+..+..|...+-+.+..+ -+-++.+....| ..++.+++++.+++.. +++-++.. ++ .+.+--
T Consensus 835 v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyID---SNNnPE~f------Lk----eN~yYD 900 (1666)
T KOG0985|consen 835 VRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYID---SNNNPERF------LK----ENPYYD 900 (1666)
T ss_pred HhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeec---CCCChHHh------cc----cCCcch
Confidence 367777778888877776654 445556666667 4578899999999987 55544321 00 011111
Q ss_pred HHHHHHHHhhC---------CCCCCC------CcchhHHHHHHHHHHhcCChHHHH-----------HHHHHHHhCCCC-
Q 043999 86 RSLLCHLTQLF---------PSSSNP------VTKSRLYESIIDAHLKSRLSDQAL-----------FYFHQMLDSGVR- 138 (574)
Q Consensus 86 ~~l~~~~~~~~---------~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~-----------~~~~~~~~~g~~- 138 (574)
+..+..++.-- ...+.+ +.....|-.+.+.+.+..+++--. ++.++.++.+++
T Consensus 901 s~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E 980 (1666)
T KOG0985|consen 901 SKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPE 980 (1666)
T ss_pred hhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCc
Confidence 11122221110 000000 011123344444444444433222 233333333322
Q ss_pred -CCHHHHHHHHHHHHhcCChhHHHHHHHHcccC---CCCCHHHHHHHHHHHHh---------------------------
Q 043999 139 -PRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK---VELDVYSFGILIKGCCE--------------------------- 187 (574)
Q Consensus 139 -p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~li~~~~~--------------------------- 187 (574)
.|+...+....++-..+-..+-+++++++.-. +..+...-|.|+-.-.+
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 23444455566666666666777777665432 33333444444433333
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043999 188 AGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEF 267 (574)
Q Consensus 188 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 267 (574)
++-+++|..+|++.. .+....+.||. .-+.+|.|.+.-++.. .+..|..+..+-.+.|...+|++-
T Consensus 1061 ~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHH
Confidence 333344444443321 13333333332 1233444444333331 345677777777777777777666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 268 YEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGIS 347 (574)
Q Consensus 268 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 347 (574)
|-+. .|+..|..+++...+.|.+++-.+.+...+++.-+|.+. ..++-+|++.++..+.+.++ ..
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~g 1191 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AG 1191 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cC
Confidence 5442 256667777777777777777777776666665554443 35666777777766554433 13
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 043999 348 PNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILI 427 (574)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 427 (574)
||......+.+-|...+.++.|.-+|.. +..|..|...+...|++..|.+.-++.- +..||..+-
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~Vc 1256 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVC 1256 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHH
Confidence 5666666666666666666666655532 3345566666666666666655544331 344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 428 DSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMW 482 (574)
Q Consensus 428 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 482 (574)
.+|...+.+.-|. |-..++.....-...++..|-..|-+++-+.+++..+
T Consensus 1257 faCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 5555444443321 1111122223334556666666666666666666543
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=7.1e-08 Score=82.09 Aligned_cols=205 Identities=12% Similarity=-0.031 Sum_probs=157.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 043999 144 FNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKN 223 (574)
Q Consensus 144 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 223 (574)
...|.-.|...|++..|.+-+++..+..|.+.-+|..+...|-+.|+.+.|.+.|++...... -+..+.|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhC
Confidence 334566788889999999999998888788888899999999999999999999998887542 3567788888888999
Q ss_pred CCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043999 224 GDIERAKMLFRKIGELG-LVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKL 302 (574)
Q Consensus 224 g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 302 (574)
|++++|...|++....- ...-..+|..+.-+..+.|+.+.|.+.|++.++.... ...+...+.....+.|++..|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 99999999998876642 2223567888888888888888888888888876422 445667777888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 043999 303 FDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITY 353 (574)
Q Consensus 303 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 353 (574)
++.....+. ++..+.-..|..-.+.|+.+.+-+.=.++.+. -|...-|
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 888877766 57777777777777788887777766666554 3444333
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=5.1e-07 Score=79.63 Aligned_cols=292 Identities=13% Similarity=0.086 Sum_probs=183.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhc
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEA 188 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 188 (574)
+++.+..+.+..++++|+++...-.+.. +.+....+.|..+|-...++.+|-..|+++....|.-..-----...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 5666666778889999999988887764 226667777888888888999999999888765333332222345667788
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043999 189 GDLNKAFEVLNQLEEMGFSPNVVIYTSLID--GCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFE 266 (574)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 266 (574)
+.+..|+++...|... |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 9999999998888652 33222222222 2345788888888888876433 55566666777788999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CH---------------HHH
Q 043999 267 FYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVAC-------------NV---------------VTY 318 (574)
Q Consensus 267 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-------------~~---------------~~~ 318 (574)
-|....+-+---....|+..+.. .+.|+.+.|++...++.++|++- |+ ..+
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 99888765433345567665544 46788999999999988877541 11 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043999 319 NTLICGLCKEMRVQEAERLLDQMKMAG-ISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSK 397 (574)
Q Consensus 319 ~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 397 (574)
|.-...+.+.++++.|.+.+-+|.-.. ...|++|...+.-. -..+++.+..+-+.-+..... -...||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 222233445666666666665553221 23344554433211 123444444444555554432 244566666666676
Q ss_pred cCChHHHHHHHHH
Q 043999 398 AGNSKMASDLVRE 410 (574)
Q Consensus 398 ~g~~~~A~~~~~~ 410 (574)
..-++-|-+++.+
T Consensus 323 Neyf~lAADvLAE 335 (459)
T KOG4340|consen 323 NEYFDLAADVLAE 335 (459)
T ss_pred hHHHhHHHHHHhh
Confidence 6666666666554
No 93
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.13 E-value=9e-06 Score=77.91 Aligned_cols=412 Identities=14% Similarity=0.130 Sum_probs=230.5
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILI 182 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 182 (574)
|.|..+|+.||+-+..+ .++++++.++++... ++.....|..-|....+..+++...++|.+.... ..+...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-VLNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhhHhHHHHHH
Confidence 56789999999998766 999999999999875 4556788999999999999999999999998765 23566666665
Q ss_pred HHHHh-cCChhHH----HHHHHHH-HHCCCCCCH-HhHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCCCCChh
Q 043999 183 KGCCE-AGDLNKA----FEVLNQL-EEMGFSPNV-VIYTSLIDG---------CCKNGDIERAKMLFRKIGELGLVATQH 246 (574)
Q Consensus 183 ~~~~~-~g~~~~A----~~~~~~m-~~~g~~p~~-~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~~ 246 (574)
.---+ .|+...+ .+.|+-. .+.|+.+-. ..|+..+.- |..+.+++...++++++...-...-..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 54332 3343332 3334332 334543322 234444433 344556777788888876532221111
Q ss_pred hHHH------HHHHH-------HhcCCHHHHHHHHHHHHH--CCCCCCHhh---------------HHHHHHHHHhcCCH
Q 043999 247 TYTV------LICGL-------FKNGLQKDGFEFYEKMQL--NGVSPSLYT---------------YNCLIHEYCNEGKV 296 (574)
Q Consensus 247 ~~~~------li~~~-------~~~g~~~~a~~~~~~~~~--~g~~p~~~~---------------~~~li~~~~~~g~~ 296 (574)
.|+- =|+.. -+...+..|.++++++.. +|...+..+ |-.+|..--.++--
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 2221 11111 112344556666666542 233222221 33333221111110
Q ss_pred --------HHHHHHHHH-HHhCCCCCCHHHHHH-----HHHHHHhcCC-------HHHHHHHHHHHHHCCCCCChhhHHH
Q 043999 297 --------SEGFKLFDE-MRHREVACNVVTYNT-----LICGLCKEMR-------VQEAERLLDQMKMAGISPNVITYNK 355 (574)
Q Consensus 297 --------~~A~~~~~~-m~~~~~~~~~~~~~~-----li~~~~~~~~-------~~~A~~~~~~m~~~g~~~~~~~~~~ 355 (574)
....-++++ +.-.+..|++....+ .-+.+...|+ -+++..+++...+.-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111 111222222211100 0111222232 3455556665544322233334433
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHH
Q 043999 356 LIDGFCDA---GETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITP-SEVTYTILIDSFV 431 (574)
Q Consensus 356 li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~ 431 (574)
+.+.--.. ...+...+.++++...-...-..+|..+++.-.+..-+..|..+|.+..+.+..+ ++.+.++++..+|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 33221111 1245555566665543222223456667777777777888888888888776666 6667777777665
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 043999 432 RSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN--DVVYNMMIFGYCKEGNSYRA 509 (574)
Q Consensus 432 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A 509 (574)
. ++.+-|.++|+.-.+. +..++.--...++-+...++-..+..+|+..+..++.|+ ...|..++.-=..-|+...+
T Consensus 414 s-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 S-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred c-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 4 5667788888765544 233444445666777777887888888888877655444 45788888777778888888
Q ss_pred HHHHHHHHHC
Q 043999 510 LRLLGEMNEK 519 (574)
Q Consensus 510 ~~~~~~m~~~ 519 (574)
.++-+++...
T Consensus 492 ~~lekR~~~a 501 (656)
T KOG1914|consen 492 LKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHh
Confidence 8777776654
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.5e-07 Score=86.66 Aligned_cols=410 Identities=16% Similarity=0.066 Sum_probs=221.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChh
Q 043999 113 IDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLN 192 (574)
Q Consensus 113 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 192 (574)
.++.+..|+++.|+..|-+.+... ++|.+.|.--..+|.+.|++++|++=-.+.....|.-.-.|.....++.-.|+++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 356678899999999999988875 4477788888889999999999988777666555555678888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHH-HHHHH
Q 043999 193 KAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGL-QKDGF-EFYEK 270 (574)
Q Consensus 193 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~-~~~~~ 270 (574)
+|+..|.+-++.. +.|...++-+.+++. .+.+. +.. ..++..|..+..--...+. .+.+. .++..
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 9999999887753 235566677777661 11111 110 0122222222211111100 01111 11111
Q ss_pred HHHCCCCCCHhhH---HHHHHHHHhcCCHHHH-HHHHHHH-HhCCCCC----------------------CHHHHHHHHH
Q 043999 271 MQLNGVSPSLYTY---NCLIHEYCNEGKVSEG-FKLFDEM-RHREVAC----------------------NVVTYNTLIC 323 (574)
Q Consensus 271 ~~~~g~~p~~~~~---~~li~~~~~~g~~~~A-~~~~~~m-~~~~~~~----------------------~~~~~~~li~ 323 (574)
.... +.+...| ..++.+.......+.- ...-..+ ...+..| -..-...+.+
T Consensus 155 ~~~~--p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 155 IQKN--PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred hhcC--cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 1110 0000000 0011110000000000 0000000 0000000 1122445666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHH
Q 043999 324 GLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNV-------LIRAFS 396 (574)
Q Consensus 324 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-------li~~~~ 396 (574)
...+..+++.|++-+....+.. .+..-++....+|...|.+..+...-+...+.|.. ...-|+. +..+|.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhh
Confidence 7777788888888888877764 35555566667788888877777776666665433 2222222 334566
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 043999 397 KAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDV-YTYGVLIHGLCMKGNMKEAS 475 (574)
Q Consensus 397 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~ 475 (574)
+.++.+.|+..|.+.......|+.. .+....+++....+...-.+ |.. .-...-...+.+.|++..|+
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHH
Confidence 6777888888888766544443322 22233344444433333222 221 11111244556667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 476 KLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 476 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
+.|.+++...+. |...|....-+|.+.|.+..|+.-.+...+.. ++....|..=..++....++++|...|++.++.
T Consensus 379 ~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 379 KHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777776665433 56666666666777777777766666666641 222344444445555556666666666666654
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.10 E-value=1.6e-06 Score=85.59 Aligned_cols=312 Identities=17% Similarity=0.136 Sum_probs=145.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 043999 145 NSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNG 224 (574)
Q Consensus 145 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 224 (574)
.+.++++...|+-++|-++-+. ..| -.+.|+.|.+.|..-+|.+....=.+ ...|......+..++.+..
T Consensus 593 ~sy~q~l~dt~qd~ka~elk~s-----dgd---~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~e 662 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELKES-----DGD---GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGE 662 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhccc-----cCc---cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhH
Confidence 3445555566665555433211 111 12345667777777666554321111 1235555555666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHHHHHHHH
Q 043999 225 DIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTY-NCLIHEYCNEGKVSEGFKLF 303 (574)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~ 303 (574)
-+++|-.+|+++.. +.-.+.+|-+-.-+.+|+++-+-. ++..+++. ......+...|+++.|...|
T Consensus 663 lydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhf 729 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHF 729 (1636)
T ss_pred HHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHH
Confidence 66666666666542 111223333333344444433221 11112211 12223344455555555544
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043999 304 DEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSP 383 (574)
Q Consensus 304 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 383 (574)
-+... .--.+.+......+.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.++|.+.-
T Consensus 730 iea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~------ 792 (1636)
T KOG3616|consen 730 IEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD------ 792 (1636)
T ss_pred HHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc------
Confidence 33211 1122334445566666666666665542 122334555566666666666666664331
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 384 SVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIH 463 (574)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 463 (574)
.++--|..|.+.|+|++|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+. .|+. .|.
T Consensus 793 ---~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiq 858 (1636)
T KOG3616|consen 793 ---LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQ 858 (1636)
T ss_pred ---hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHH
Confidence 23344566666666666666654432 222233444444444555666666665553222 2332 234
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043999 464 GLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLL 513 (574)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 513 (574)
+|-+.|..+..+++..+--. ..-..|...+..-|-..|+.+.|..-|
T Consensus 859 mydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 859 MYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred HHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 55555555555555443211 011223334444444555555555444
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=2.6e-06 Score=94.73 Aligned_cols=337 Identities=12% Similarity=0.021 Sum_probs=207.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCCH--hhHHHHHHHH
Q 043999 219 GCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGV------SPSL--YTYNCLIHEY 290 (574)
Q Consensus 219 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~------~p~~--~~~~~li~~~ 290 (574)
.....|+++.+..+++.+.......+..........+...|+++++..++......-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3455677777777776653211111222334445556678899999988887654210 1111 1122233455
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--ChhhHHHHHHHHH
Q 043999 291 CNEGKVSEGFKLFDEMRHREVACNV----VTYNTLICGLCKEMRVQEAERLLDQMKMAGI---SP--NVITYNKLIDGFC 361 (574)
Q Consensus 291 ~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~~--~~~~~~~li~~~~ 361 (574)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++.....- .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999887663222122 2345566677789999999999888764311 11 1234455667788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCC--CHhHHHHHHHHH
Q 043999 362 DAGETDKAFRLFNQLKSN----GQS--P-SVVTYNVLIRAFSKAGNSKMASDLVREMEER--GITP--SEVTYTILIDSF 430 (574)
Q Consensus 362 ~~g~~~~A~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~ 430 (574)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999988876542 211 1 1233445556677789999999988887542 1112 223344455677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 043999 431 VRSDDMEKAFEMYSLMQKSGFS-PDVYTY-----GVLIHGLCMKGNMKEASKLFNSMWETKLEPN---DVVYNMMIFGYC 501 (574)
Q Consensus 431 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~ 501 (574)
...|+.++|...+......... .....+ ...+..+...|+.+.|.+.+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8889999999988887542101 111111 1122444567899999998877654211111 112345667788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043999 502 KEGNSYRALRLLGEMNEK----GLVPN-IASYSSTIGVLCQDGKWPEAEVLLNQMLKLG 555 (574)
Q Consensus 502 ~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 555 (574)
..|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999887653 32222 2455666778889999999999999998653
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=3.8e-07 Score=80.44 Aligned_cols=328 Identities=14% Similarity=0.132 Sum_probs=191.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHH
Q 043999 178 FGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTV-LICGLF 256 (574)
Q Consensus 178 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~ 256 (574)
+++.+..+.+..+++.|++++..-.++.. .+....+.|..+|....++..|-.-++++.... |...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 45556666778888888888887776542 266677888888888888888888888886643 33333322 235566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 257 KNGLQKDGFEFYEKMQLNGVSPSLYTYNCLI--HEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEA 334 (574)
Q Consensus 257 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 334 (574)
+.+.+.+|+++...|... |+...-..-+ ......+++..+..+.++....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 778888888888777642 2222111111 12234677777777777765332 555555566666788888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------CHH--------HHHHHHH
Q 043999 335 ERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSP-------------SVV--------TYNVLIR 393 (574)
Q Consensus 335 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-------------~~~--------~~~~li~ 393 (574)
.+-|+...+-+--.....||.-+. ..+.|+.+.|++...++++.|++. |+. .-+.++.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 888888777554445556665543 446678888888888888776431 211 1233333
Q ss_pred H-------HHhcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 394 A-------FSKAGNSKMASDLVREMEER-GITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGL 465 (574)
Q Consensus 394 ~-------~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 465 (574)
+ +.+.++.+.|.+.+..|.-+ ....|++|...+.-.- -.+++.+..+-+..+...+ +-...|+..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3 23556777777766666522 2234566655443221 2234444444455555443 23345666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 043999 466 CMKGNMKEASKLFNSMWETKLE-PNDVVYNMMIFGYC-KEGNSYRALRLLGEMNE 518 (574)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 518 (574)
|+..-++-|-.++.+-.....+ .+...|+ |+.++. ..-..++|.+-++.+..
T Consensus 321 CKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred hhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 7777777777776653221111 1222233 223332 23455666655555443
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=4.6e-06 Score=92.73 Aligned_cols=369 Identities=11% Similarity=-0.007 Sum_probs=223.3
Q ss_pred HHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 043999 150 FVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERA 229 (574)
Q Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 229 (574)
.+...|++.+|.......... ..-..............|+++.+...++.+.......+..........+...|++++|
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 344556666665555444321 0000111222333455677777777776653211111222334455566778999999
Q ss_pred HHHHHHHHhCCC------CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHH
Q 043999 230 KMLFRKIGELGL------VAT--QHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSL----YTYNCLIHEYCNEGKVS 297 (574)
Q Consensus 230 ~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~ 297 (574)
...+......-. .+. ......+...+...|++++|...+++....-...+. ...+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 999887654211 111 112223345566789999999999988763111121 23455666778899999
Q ss_pred HHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhcCC
Q 043999 298 EGFKLFDEMRHR----EV-ACNVVTYNTLICGLCKEMRVQEAERLLDQMKMA----GIS--P-NVITYNKLIDGFCDAGE 365 (574)
Q Consensus 298 ~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~ 365 (574)
+|...+++.... |. .+...++..+...+...|++++|...+++.... +.. + ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 999998887642 11 111234555667788899999999998886542 211 1 22334555667778899
Q ss_pred HHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhHH-----HHHHHHHHhcCC
Q 043999 366 TDKAFRLFNQLKSNG--QSP--SVVTYNVLIRAFSKAGNSKMASDLVREMEERGIT-PSEVTY-----TILIDSFVRSDD 435 (574)
Q Consensus 366 ~~~A~~~~~~~~~~g--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~ 435 (574)
+++|...+++..... ..+ ....+..+...+...|+.++|...+.+....... .....+ ...+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 999999988875431 112 2334444566778899999999998887542111 011111 112234456789
Q ss_pred HHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 043999 436 MEKAFEMYSLMQKSGFSPDV---YTYGVLIHGLCMKGNMKEASKLFNSMWET----KLEP-NDVVYNMMIFGYCKEGNSY 507 (574)
Q Consensus 436 ~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~ 507 (574)
.+.|...+............ ..+..+...+...|+.++|...+++.... +..+ ...+...+..++.+.|+.+
T Consensus 669 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~ 748 (903)
T PRK04841 669 KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS 748 (903)
T ss_pred HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999887765432211111 11345667788899999999999988753 2222 2345667778888999999
Q ss_pred HHHHHHHHHHHC
Q 043999 508 RALRLLGEMNEK 519 (574)
Q Consensus 508 ~A~~~~~~m~~~ 519 (574)
+|...+.+..+.
T Consensus 749 ~A~~~L~~Al~l 760 (903)
T PRK04841 749 EAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=8.1e-06 Score=81.85 Aligned_cols=211 Identities=15% Similarity=0.188 Sum_probs=121.2
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHh-CC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCC
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLD-SG--------VRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELD 174 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g--------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (574)
.+..+|..|.+++.+.++++-|.-.+-.|.. +| -.|+ .+-..+...-...|..++|..+|++.+.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR----- 828 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence 4557899999999998888766555444421 11 0121 1212222333467888888888888764
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH----------HhCCC---
Q 043999 175 VYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKI----------GELGL--- 241 (574)
Q Consensus 175 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~~~--- 241 (574)
|..|-+.|-..|.+++|.++-+.-.+-. =..||..-..-+-..+|.+.|++.|++. +...+
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 4556667777888888888876533221 1235555666666678888888777653 11111
Q ss_pred ------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 043999 242 ------VATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNV 315 (574)
Q Consensus 242 ------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 315 (574)
..|...|.-....+-..|+.+.|+.+|..... |.++++..|-.|+.++|-++-++-. |.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cH
Confidence 11233333344444556777777777665542 3445555555566666655544321 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 316 VTYNTLICGLCKEMRVQEAERLLDQM 341 (574)
Q Consensus 316 ~~~~~li~~~~~~~~~~~A~~~~~~m 341 (574)
.....+...|-..|++.+|..+|.+.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44455555666666666666655443
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=7.9e-08 Score=89.31 Aligned_cols=247 Identities=15% Similarity=0.158 Sum_probs=128.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043999 256 FKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAE 335 (574)
Q Consensus 256 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 335 (574)
.-.|.+..++.-.+ ........+.....-+.+++...|+.+.++ .++.+.. .|.......+...+....+-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34455555554433 111111112333444556666666655433 3332222 445555444444443334444444
Q ss_pred HHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043999 336 RLLDQMKMAGISP-NVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEER 414 (574)
Q Consensus 336 ~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 414 (574)
.-+++.......+ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444433332221 2222222233455567777777766432 24555566667777777777777777777654
Q ss_pred CCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 043999 415 GITPSEVTYTILIDSFVR----SDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPND 490 (574)
Q Consensus 415 ~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 490 (574)
. +..+...+..++.. .+.+.+|..+|+++.+. +++++.+.+.+..++...|++++|.+++.+..+.+.. ++
T Consensus 161 --~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~ 235 (290)
T PF04733_consen 161 --D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DP 235 (290)
T ss_dssp --S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HH
T ss_pred --C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CH
Confidence 2 22334444444322 23577777777776554 4566777777777777777777777777777665433 55
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 043999 491 VVYNMMIFGYCKEGNS-YRALRLLGEMNE 518 (574)
Q Consensus 491 ~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 518 (574)
.+...++.+....|+. +.+.+++.++..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 5666666666666666 556667777665
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=2.1e-05 Score=71.17 Aligned_cols=369 Identities=10% Similarity=0.067 Sum_probs=213.2
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHH-HHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSN-TFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVY-SFGIL 181 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l 181 (574)
.++.-..-|...+...|++.+|+.-|...++.+ |+.+ ++-.-...|...|+..-|+.-+.++.+. +||.. +.---
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-CccHHHHHHHh
Confidence 344556678888899999999999999998753 4332 3333456788889999998888887765 55543 33444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHH----hH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEMGFSPNVV----IY------------TSLIDGCCKNGDIERAKMLFRKIGELGLVATQ 245 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 245 (574)
...+.+.|++++|..=|+.+++.. |+.. .+ ...+..+...|+...|+.+...+++..+ -|.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chh
Confidence 567889999999999999998764 3211 11 1112223334555555555555544322 144
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043999 246 HTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGL 325 (574)
Q Consensus 246 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 325 (574)
..|..-..+|...|++..|+.-++...+.. ..+..++.-+-..+...|+.+.++...++.++.++ |-... |
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp--dHK~C------f 260 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP--DHKLC------F 260 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc--chhhH------H
Confidence 444444455555555555544444433321 12333334444444445555555555444444321 11000 0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChH
Q 043999 326 CKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVT---YNVLIRAFSKAGNSK 402 (574)
Q Consensus 326 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~ 402 (574)
..-.++.+..+.++.| ......+++.++++..+...+......... +..+-.++...|++.
T Consensus 261 ~~YKklkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 0000111111111111 223456788888888888877643322333 334445667789999
Q ss_pred HHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 403 MASDLVREMEERGITP-SEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSM 481 (574)
Q Consensus 403 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 481 (574)
+|++...+..+. .| |..++.--..+|.-...++.|+.-|+...+.+ +.+... +.| .+.|.++....
T Consensus 325 eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n-~sn~~~---------reG-le~Akrlkkqs 391 (504)
T KOG0624|consen 325 EAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN-ESNTRA---------REG-LERAKRLKKQS 391 (504)
T ss_pred HHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-cccHHH---------HHH-HHHHHHHHHHh
Confidence 999999999876 34 47888888899999999999999999998864 222221 111 35555554443
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043999 482 WETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNI 525 (574)
Q Consensus 482 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 525 (574)
-++ | -|.+|. --+.-.-.+..+.+++|..+ ..||.
T Consensus 392 ~kR----D--YYKILG--VkRnAsKqEI~KAYRKlAqk-WHPDN 426 (504)
T KOG0624|consen 392 GKR----D--YYKILG--VKRNASKQEITKAYRKLAQK-WHPDN 426 (504)
T ss_pred ccc----h--HHHHhh--hcccccHHHHHHHHHHHHHh-cCCcc
Confidence 221 2 233322 23445566777788888776 66664
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=7.3e-08 Score=89.54 Aligned_cols=250 Identities=17% Similarity=0.104 Sum_probs=127.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHH
Q 043999 115 AHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKA 194 (574)
Q Consensus 115 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 194 (574)
-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++....+|.......+...+...++-+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCCChhHHHHHHHHHHHhCccchHHH
Confidence 3344567776665554 222111112333344556666667655433 333333355555555555444443444455
Q ss_pred HHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 195 FEVLNQLEEMGFS-PNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQL 273 (574)
Q Consensus 195 ~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 273 (574)
+.-+++....+.. .+..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5444443322222 12222233334455567777777666432 2455566666777777777777777777765
Q ss_pred CCCCCCHhhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043999 274 NGVSPSLYTYNCLIHEYC----NEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPN 349 (574)
Q Consensus 274 ~g~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~ 349 (574)
. ..| .+...+..++. ..+.+.+|..+|+++.++ ..+++.+.|.+..+....|++++|..++.+....+ +-+
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 4 223 22333333322 233567777777776544 44466666777777777777777777777765543 334
Q ss_pred hhhHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 043999 350 VITYNKLIDGFCDAGET-DKAFRLFNQLKSN 379 (574)
Q Consensus 350 ~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~ 379 (574)
..+...++.+....|+. +.+.+++.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55555566555555655 5555666666543
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.92 E-value=4.4e-06 Score=85.52 Aligned_cols=417 Identities=12% Similarity=-0.021 Sum_probs=233.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043999 122 SDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQL 201 (574)
Q Consensus 122 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 201 (574)
...|+..|-+.++..+. =...|..|...|+...+...|.+.|+..-+..+.+..++....+.|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 66777777776665321 24567777777777777777888887777666677777777888888888888877774333
Q ss_pred HHCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043999 202 EEMGF-SPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSL 280 (574)
Q Consensus 202 ~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 280 (574)
.+... ..-...|..+.-.|.+.++..+|..-|+...+.++. |...|..+..+|...|++..|++.|.+.... +|+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 22110 001112333444566677777777777777766554 6777777777777777777777777776653 3332
Q ss_pred h-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCC
Q 043999 281 Y-TYNCLIHEYCNEGKVSEGFKLFDEMRHRE------VACNVVTYNTLICGLCKEMRV-------QEAERLLDQMKMAGI 346 (574)
Q Consensus 281 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~-------~~A~~~~~~m~~~g~ 346 (574)
. .-.-..-..|..|++.+|...+..+...- ...-..++-.+...+.-.|-. +++++.|.-......
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 1 11222334566777777777766654321 111122222222222222222 222222222222211
Q ss_pred CCChhhHHHHHH-------------------H----HHhcCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043999 347 SPNVITYNKLID-------------------G----FCDAGET---D---KAFRLFNQLKSNGQSPSVVTYNVLIRAFSK 397 (574)
Q Consensus 347 ~~~~~~~~~li~-------------------~----~~~~g~~---~---~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 397 (574)
..+...|-.+.+ . .-+.+.. | -+.+.+-.-.+ ...+..+|..++..|.+
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHH
Confidence 112222211111 1 1111111 1 11111111111 11234455555554433
Q ss_pred ----c----CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043999 398 ----A----GNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKG 469 (574)
Q Consensus 398 ----~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 469 (574)
. .+...|...+.+.++.. ..+..+|+.|.-. ...|.+.-|...|-+-.... +....+|..+.-.+.+..
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 1 12246777777777652 3366677766544 66677777777776555443 556678888888888999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043999 470 NMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMN----EKGLVPNIASYSSTIGVLCQDGKWPEAE 545 (574)
Q Consensus 470 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 545 (574)
+++.|...|.......+. |...|-.........|+.-++..+|..-- ..|-.|+...|..........|+.++-+
T Consensus 865 d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 999999999988775332 56666665555667888888888887622 2244455555555555555666665544
Q ss_pred HHH
Q 043999 546 VLL 548 (574)
Q Consensus 546 ~~~ 548 (574)
...
T Consensus 944 ~t~ 946 (1238)
T KOG1127|consen 944 NTA 946 (1238)
T ss_pred HHh
Confidence 433
No 104
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.3e-05 Score=80.37 Aligned_cols=386 Identities=15% Similarity=0.147 Sum_probs=196.6
Q ss_pred chhHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHccc---------C-CC
Q 043999 105 KSRLYESIID--AHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRC---------K-VE 172 (574)
Q Consensus 105 ~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---------~-~~ 172 (574)
|..+-.++++ .|...|+.+.|.+-.+.+. +...|..+.+++.+..+.+-|.-.+-.|.. . ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4455555553 3556677777776655443 345677777777777777666554443321 0 11
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043999 173 LDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLI 252 (574)
Q Consensus 173 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 252 (574)
++ .+-......-.+.|.+++|..++++..+ |..|=..|...|.+++|.++-+.-.+.. -..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 11 2222222333466777777777777664 3334455666778888877665432222 233555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----------C---------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043999 253 CGLFKNGLQKDGFEFYEKMQLN----------G---------VSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVAC 313 (574)
Q Consensus 253 ~~~~~~g~~~~a~~~~~~~~~~----------g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 313 (574)
..+-..++.+.|++.|++.... . -..|...|.-....+-..|+.+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 6666667777777776653211 0 011222233333333345555555555554432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 314 NVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIR 393 (574)
Q Consensus 314 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 393 (574)
|-.++...|-.|+.++|-++-++ .| |....-.|...|-..|++.+|...|.+... +..-|+
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR 1001 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR 1001 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH
Confidence 34455555566666666655443 22 555566677777777777777777766543 222222
Q ss_pred HHHhcC---------------ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH--------HH--H
Q 043999 394 AFSKAG---------------NSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSL--------MQ--K 448 (574)
Q Consensus 394 ~~~~~g---------------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~--~ 448 (574)
.|-.++ +.-.|-.+|++ .|.. +...+..|-+.|.+.+|+++--+ ++ +
T Consensus 1002 lcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1002 LCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 221111 11112222222 1110 11223335555555555543211 11 1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH--
Q 043999 449 SGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE-KGLVPNI-- 525 (574)
Q Consensus 449 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-- 525 (574)
.....|+...+--.+.++...++++|..++....+ |.-.+. +|...+..--.++-+.|.- ++-.|+.
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~ 1143 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQE 1143 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHH
Confidence 12234555666666666777777777777665543 222222 2333333333333333321 1122332
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 526 --ASYSSTIGVLCQDGKWPEAEVLLNQM 551 (574)
Q Consensus 526 --~~~~~l~~~~~~~g~~~~A~~~~~~m 551 (574)
.....+...|.++|.+..|.+-|.++
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 34566677888889888887766544
No 105
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=2.1e-06 Score=80.96 Aligned_cols=219 Identities=10% Similarity=-0.008 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSC-SFDKGWLFFSENRCKVELDVYSFGILIKGCC 186 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 186 (574)
+++.+-..+...++.++|+.+..++++.. +-+..+|+.-..++.+.| ++++++..++++....+.+..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 34444444555555666666666655542 112334444444444444 3455555555555444445555554444444
Q ss_pred hcCCh--hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CH
Q 043999 187 EAGDL--NKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNG---LQ 261 (574)
Q Consensus 187 ~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~ 261 (574)
+.|+. +++++.++++.+... -|..+|+...-++.+.|+++++++.++++++.++. +..+|+.....+.+.+ ..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 44432 344444444444322 24444544444444555555555555555444433 3334443333322221 00
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHH
Q 043999 262 KDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKE----MRVQEAERL 337 (574)
Q Consensus 262 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~~A~~~ 337 (574)
+ ...++..+...+++...+. |...|+-+...+... ++..+|...
T Consensus 196 ~-------------------------------~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 196 E-------------------------------AMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred c-------------------------------ccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 0 0123344444454444443 555565555555442 233446566
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHh
Q 043999 338 LDQMKMAGISPNVITYNKLIDGFCD 362 (574)
Q Consensus 338 ~~~m~~~g~~~~~~~~~~li~~~~~ 362 (574)
+.+....+ +.+......|++.|+.
T Consensus 244 ~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 244 CLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHhhccc-CCcHHHHHHHHHHHHh
Confidence 65555432 3345556666666654
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.86 E-value=0.00011 Score=70.72 Aligned_cols=411 Identities=10% Similarity=0.093 Sum_probs=250.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043999 138 RPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLI 217 (574)
Q Consensus 138 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 217 (574)
+-|..+|+.||.-+... .++++++.++++...+|.....|..-|....+..+++...++|.+.+..- .+...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 55899999999877655 99999999999999999999999999999999999999999999988653 3566777766
Q ss_pred HHHHh-cCCHHHHH----HHHHHH-HhCCCCC-ChhhHHHHHHHH---------HhcCCHHHHHHHHHHHHHCCCCCCHh
Q 043999 218 DGCCK-NGDIERAK----MLFRKI-GELGLVA-TQHTYTVLICGL---------FKNGLQKDGFEFYEKMQLNGVSPSLY 281 (574)
Q Consensus 218 ~~~~~-~g~~~~A~----~~~~~~-~~~~~~~-~~~~~~~li~~~---------~~~g~~~~a~~~~~~~~~~g~~p~~~ 281 (574)
+--.+ .|+...+. +.|+-. .+.|..+ +...|+..+..+ ..+.+.+...+++.+++...+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 54433 34433322 223322 2334332 233455555432 33445566677777777542211111
Q ss_pred hH------HHHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHHHHHhcC--
Q 043999 282 TY------NCLIHEY-------CNEGKVSEGFKLFDEMRH--REVACNVV---------------TYNTLICGLCKEM-- 329 (574)
Q Consensus 282 ~~------~~li~~~-------~~~g~~~~A~~~~~~m~~--~~~~~~~~---------------~~~~li~~~~~~~-- 329 (574)
.| ..=|+.. -+...+..|.++++++.. +|...... .|..+|..=-.++
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 22 1111111 122345667777776642 23221111 1333333211111
Q ss_pred ----CH--HHHHHHHHH-HHHCCCCCChhhH-H----HHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHH
Q 043999 330 ----RV--QEAERLLDQ-MKMAGISPNVITY-N----KLIDGFCDAGE-------TDKAFRLFNQLKSNGQSPSVVTYNV 390 (574)
Q Consensus 330 ----~~--~~A~~~~~~-m~~~g~~~~~~~~-~----~li~~~~~~g~-------~~~A~~~~~~~~~~g~~~~~~~~~~ 390 (574)
.. ....-.+++ +.-.+..|+..-. . ..-+.+...|+ -+++..+++...+.-...+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111122222 1222333332111 1 11123333444 3455566665554322223333333
Q ss_pred HHHHHHhc---CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 043999 391 LIRAFSKA---GNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSP-DVYTYGVLIHGLC 466 (574)
Q Consensus 391 li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~ 466 (574)
+...--.. ...+.....++++...-..--..+|..+++.-.+..-+..|..+|.+..+.+..+ ++.++++++.-||
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 33221111 1245555666666543222223568888888888888999999999999887777 7788889988776
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 043999 467 MKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNI--ASYSSTIGVLCQDGKWPEA 544 (574)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A 544 (574)
. ++.+-|.++|+--+.+ ..-++.--...+.-+...++-..|..+|++.+..++.||. ..|..++.--..-|+...+
T Consensus 414 s-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 S-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred c-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 4 6788999999976664 2224444567788888899999999999999998777664 7899999999999999999
Q ss_pred HHHHHHHHH
Q 043999 545 EVLLNQMLK 553 (574)
Q Consensus 545 ~~~~~~m~~ 553 (574)
.++-+++..
T Consensus 492 ~~lekR~~~ 500 (656)
T KOG1914|consen 492 LKLEKRRFT 500 (656)
T ss_pred HHHHHHHHH
Confidence 999888874
No 107
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=3.1e-06 Score=79.81 Aligned_cols=185 Identities=8% Similarity=-0.040 Sum_probs=130.0
Q ss_pred CcchhHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHcccCCCCCHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSR-LSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSF--DKGWLFFSENRCKVELDVYSFG 179 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~ 179 (574)
|.+..+|+.--..+.+.| .+++++..++++++.+ +.+..+|+.....+.+.|+. ++++.+++++....+.|..+|+
T Consensus 68 P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~ 146 (320)
T PLN02789 68 PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS 146 (320)
T ss_pred chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence 345567777777777777 6899999999999875 33566788777677777763 6789999899888888999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc---CCH----HHHHHHHHHHHhCCCCCChhhHHHHH
Q 043999 180 ILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKN---GDI----ERAKMLFRKIGELGLVATQHTYTVLI 252 (574)
Q Consensus 180 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~li 252 (574)
...-.+...|+++++++.++++++.++. |..+|+.....+.+. |+. +++++...+.+...+. +...|+-+.
T Consensus 147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~ 224 (320)
T PLN02789 147 HRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLR 224 (320)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHH
Confidence 9999999999999999999999987654 677888877766554 222 3556666666665543 666777766
Q ss_pred HHHHhc----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 043999 253 CGLFKN----GLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYC 291 (574)
Q Consensus 253 ~~~~~~----g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 291 (574)
..+... +...+|.+.+.+....+ ..+......|++.|+
T Consensus 225 ~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 225 GLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred HHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 666552 22344555555544432 123444455555554
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=8.7e-07 Score=85.48 Aligned_cols=218 Identities=16% Similarity=0.116 Sum_probs=95.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGF 265 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (574)
.+.|++.+|.-.|+...+... -+...|..|...-..+++-..|+..+++..+.++. +......|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 344444444444444444321 13344444444444444444444444444444322 3444444444444444444444
Q ss_pred HHHHHHHHCCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 266 EFYEKMQLNGVS--------PSLYTYNCLIHEYCNEGKVSEGFKLFDEM-RHREVACNVVTYNTLICGLCKEMRVQEAER 336 (574)
Q Consensus 266 ~~~~~~~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 336 (574)
+++++-+...++ ++...-.. ..+.....+....++|-++ ...+..+|+..+..|.-.|.-.|.++.|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 444444322100 00000000 1111112222333333333 222323455555555555555555555555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 043999 337 LLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPS-VVTYNVLIRAFSKAGNSKMASDLVRE 410 (574)
Q Consensus 337 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (574)
.|+.++... |.|...||.|...++...+.++|+..|++..+. .|. +.+...|.-.|...|.+++|.+.|-+
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 555555442 334455555555555555555555555555553 333 22333344455555555555555544
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=3.5e-06 Score=89.16 Aligned_cols=239 Identities=11% Similarity=0.072 Sum_probs=165.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043999 127 FYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVEL-----DVYSFGILIKGCCEAGDLNKAFEVLNQL 201 (574)
Q Consensus 127 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m 201 (574)
+-|++.+... +.+...|-..+......++.++|++++++++....+ -...|.++++....-|.-+...++|+++
T Consensus 1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 3455555542 335667888888888888888888888887765322 2235777777777778778888888888
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 043999 202 EEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPS-- 279 (574)
Q Consensus 202 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~-- 279 (574)
.+. .-....|..|...|.+.+++++|.++++.|.+.= ......|...+..+.++++.+.|..++.+.++. -|.
T Consensus 1524 cqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~e 1598 (1710)
T KOG1070|consen 1524 CQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQE 1598 (1710)
T ss_pred HHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhh
Confidence 764 2234567788888888888888888888887642 236677888888888888888888888887764 232
Q ss_pred -HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHH
Q 043999 280 -LYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNV--ITYNKL 356 (574)
Q Consensus 280 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~--~~~~~l 356 (574)
+....-.+..-.+.|+.+.+..+|+......++ -...|+..++.-.++|+.+.+..+|+++...++.|-. +.|...
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 223344455556788888888888887776554 5677888888888888888888888888877665543 345555
Q ss_pred HHHHHhcCCHHHHHHH
Q 043999 357 IDGFCDAGETDKAFRL 372 (574)
Q Consensus 357 i~~~~~~g~~~~A~~~ 372 (574)
+..=-..|+-..+..+
T Consensus 1678 LeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHhcCchhhHHHH
Confidence 5554455554444333
No 110
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.81 E-value=2.5e-05 Score=77.49 Aligned_cols=190 Identities=17% Similarity=0.229 Sum_probs=95.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043999 219 GCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSE 298 (574)
Q Consensus 219 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 298 (574)
+.....++.+|+.+++.+..+.. -...|..+..-|...|+++.|.++|.+.- .++..|.+|.+.|+|++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 33344555556666655554321 22334555566666666666666665421 23445566666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 299 GFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKS 378 (574)
Q Consensus 299 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 378 (574)
|.++-.+.. |++.....|-+-..-+-+.|++.+|.++|-.+- .|+. -|.+|-+.|..+..+++.++-..
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 666554432 333344455555555556666666666553321 2332 34556666666666555544321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043999 379 NGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEM 442 (574)
Q Consensus 379 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 442 (574)
. .-..|...+..-+-..|+...|..-|-+.. -|.+-++.|-..+-+++|.++
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 1 112333444455555566666655443322 134444555555555555544
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.81 E-value=0.00028 Score=72.18 Aligned_cols=226 Identities=12% Similarity=0.004 Sum_probs=145.4
Q ss_pred HhccCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCC
Q 043999 19 RMAKLPPLKAFSLFNWASRQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPS 98 (574)
Q Consensus 19 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (574)
.+-..+..+|+.....+.++ .|+ ..|..++.+|.- .+.|+.++|..+++..-
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl-~r~gk~~ea~~~Le~~~------------------------ 70 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSL-FRLGKGDEALKLLEALY------------------------ 70 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHH-HHhcCchhHHHHHhhhc------------------------
Confidence 33345667788888877664 233 335566665541 22778888876554331
Q ss_pred CCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHH
Q 043999 99 SSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSF 178 (574)
Q Consensus 99 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (574)
..+..|..+...+-.+|...|+.++|..+|++..+. .|+..-...+..+|++.+++.+-.+.--++-+.+|.+.+.|
T Consensus 71 -~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyf 147 (932)
T KOG2053|consen 71 -GLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYF 147 (932)
T ss_pred -cCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchH
Confidence 112347788999999999999999999999999875 46777777778888888887754444444444455566666
Q ss_pred HHHHHHHHhcCC----------hhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCChh
Q 043999 179 GILIKGCCEAGD----------LNKAFEVLNQLEEMG-FSPNVVIYTSLIDGCCKNGDIERAKMLFR-KIGELGLVATQH 246 (574)
Q Consensus 179 ~~li~~~~~~g~----------~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~ 246 (574)
=++++...+.-. ..-|.+.++.+.+.+ .--+..-...-...+-..|++++|++++. ...+.-...+..
T Consensus 148 WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~ 227 (932)
T KOG2053|consen 148 WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLY 227 (932)
T ss_pred HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchH
Confidence 666666554321 234556666666543 11122223333455567888999999884 344433333444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 247 TYTVLICGLFKNGLQKDGFEFYEKMQLNG 275 (574)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g 275 (574)
.-+.-+..+...+++.+..++-.++...|
T Consensus 228 l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 228 LENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 44566777888889999988888888875
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=9.3e-07 Score=85.29 Aligned_cols=253 Identities=14% Similarity=0.059 Sum_probs=177.2
Q ss_pred HHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 043999 149 IFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIER 228 (574)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 228 (574)
.-+.+.|++.+|.-.|+......|.+..+|..|......+++-..|+..+++..+... -|......|.-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 3455778888888888887777788888888888888888888888888888887532 256677777778888888888
Q ss_pred HHHHHHHHHhCCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 043999 229 AKMLFRKIGELGLV--------ATQHTYTVLICGLFKNGLQKDGFEFYEKMQ-LNGVSPSLYTYNCLIHEYCNEGKVSEG 299 (574)
Q Consensus 229 A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~~~~~g~~~~A 299 (574)
|.+.+++.+...++ ++...-.. ..+.....+....++|-++. ..+..+|......|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88888876543311 00000000 12222333445555555554 444446777778888888888999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 300 FKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPN-VITYNKLIDGFCDAGETDKAFRLFNQLKS 378 (574)
Q Consensus 300 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 378 (574)
.+.|+..+...+. |...||.|...++...+.++|+..|.+.++. .|+ +.+...|.-.|...|.+++|.+.|-..+.
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999998887666 8889999999999999999999999998876 455 34445566678888999999888876543
Q ss_pred C---------CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043999 379 N---------GQSPSVVTYNVLIRAFSKAGNSKMASDL 407 (574)
Q Consensus 379 ~---------g~~~~~~~~~~li~~~~~~g~~~~A~~~ 407 (574)
. +..++...|.+|=.++.-.++.|-+...
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2 1223456777777777777777655443
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.3e-08 Score=59.98 Aligned_cols=32 Identities=47% Similarity=0.926 Sum_probs=20.4
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 205 GFSPNVVIYTSLIDGCCKNGDIERAKMLFRKI 236 (574)
Q Consensus 205 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 236 (574)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=1.1e-05 Score=85.45 Aligned_cols=228 Identities=13% Similarity=0.136 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043999 314 NVVTYNTLICGLCKEMRVQEAERLLDQMKMA-GISP---NVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYN 389 (574)
Q Consensus 314 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 389 (574)
....|-..+....+.++.++|.++.++++.. ++.- -.-.|.++++.-..-|.-+...++|+++.+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 5567777777777888888888888887643 1111 1235666666666677778888888888774 22345577
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 043999 390 VLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPD---VYTYGVLIHGLC 466 (574)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~ 466 (574)
.|...|.+.+..++|.++++.|.++ +.-....|...++.+.+.++-++|..++.+..+. -|. .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 7888888888888888888888876 2346677888888888888888888888887764 233 344555566667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 043999 467 MKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNI--ASYSSTIGVLCQDGKWPEA 544 (574)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A 544 (574)
+.|+.+.+..+|+..+...++ ....|+.+++.-.++|+.+.+..+|++..+.++.|-. ..|...+.---..|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 888888888888888876444 5677888888888888888888888888888776643 4455555555555665444
Q ss_pred HHH
Q 043999 545 EVL 547 (574)
Q Consensus 545 ~~~ 547 (574)
..+
T Consensus 1691 E~V 1693 (1710)
T KOG1070|consen 1691 EYV 1693 (1710)
T ss_pred HHH
Confidence 433
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=1.6e-06 Score=79.44 Aligned_cols=186 Identities=11% Similarity=-0.025 Sum_probs=131.3
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHH---
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRS---NTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVY--- 176 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--- 176 (574)
+.....+..+...+.+.|++++|...|+++++.. +.+. .++..+..++.+.|++++|...++++....|.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4556788899999999999999999999998753 2222 46677888999999999999999999876444443
Q ss_pred HHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 043999 177 SFGILIKGCCEA--------GDLNKAFEVLNQLEEMGFSPNVV-IYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHT 247 (574)
Q Consensus 177 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 247 (574)
++..+...+.+. |+.++|.+.++++.+.. |+.. .+..+..... ... ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH--------HH
Confidence 566666777655 78889999999988753 4332 2222211100 000 000 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 248 YTVLICGLFKNGLQKDGFEFYEKMQLNGV--SPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR 309 (574)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 309 (574)
...+...+.+.|++++|...+++..+... +.....+..+...+.+.|++++|...++.+..+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22456678888999999999988886521 123467888888999999999999988887665
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=1.9e-08 Score=59.31 Aligned_cols=32 Identities=56% Similarity=1.103 Sum_probs=16.9
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 275 GVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEM 306 (574)
Q Consensus 275 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 306 (574)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=1.6e-06 Score=85.94 Aligned_cols=215 Identities=17% Similarity=0.116 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043999 317 TYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFS 396 (574)
Q Consensus 317 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 396 (574)
.-..+...+...|-...|..+++++. .|...+.+|+..|+..+|..+..+..++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33445566667777777777777654 3445667777777777777777766663 567777777777666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 397 KAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASK 476 (574)
Q Consensus 397 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 476 (574)
...-+++|.++.+....+ .-..+.......++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 666667777776654322 11111111233577777777777766654 4455667677777777777777777
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 477 LFNSMWETKLEP-NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 477 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
.|...... .| +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|....-...+.|.+++|.+.+.++.+
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 77777664 34 45667777777777777777777777777765 33445566666666777777777777777763
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=4.6e-06 Score=76.35 Aligned_cols=186 Identities=8% Similarity=-0.015 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HhHH
Q 043999 140 RSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDV---YSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNV--VIYT 214 (574)
Q Consensus 140 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~ 214 (574)
....+-.+...+.+.|++++|...|+++....|.+. .++..+...+.+.|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 445566677778888888888888888776644443 46677888888888888888888888775321111 1344
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 043999 215 SLIDGCCKN--------GDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCL 286 (574)
Q Consensus 215 ~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 286 (574)
.+..++.+. |+.++|.+.|+++.+..+. +...+..+..... ... .. ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHHHHH
Confidence 455555544 6778888888888765433 2222222211100 000 00 0011256
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 287 IHEYCNEGKVSEGFKLFDEMRHREVA--CNVVTYNTLICGLCKEMRVQEAERLLDQMKMA 344 (574)
Q Consensus 287 i~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 344 (574)
...|.+.|++++|...++...+..+. .....+..+...+.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67789999999999999999876432 24578899999999999999999999988765
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=5.3e-06 Score=72.81 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=118.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCCh
Q 043999 112 IIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDL 191 (574)
Q Consensus 112 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 191 (574)
-+..|...|+++.+....+++... .. -+...++.+++...++......|.|...|..+...|...|++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~---~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADP---LH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCc---cc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence 356788889988875554333221 01 111356777888888888777788999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 043999 192 NKAFEVLNQLEEMGFSPNVVIYTSLIDGC-CKNGD--IERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFY 268 (574)
Q Consensus 192 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 268 (574)
++|...+++..+... .+...+..+..++ ...|+ .++|.+++++..+.++. +..++..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999888653 3677777777764 67777 58999999999888765 7788888888999999999999999
Q ss_pred HHHHHCCCCCCHhh
Q 043999 269 EKMQLNGVSPSLYT 282 (574)
Q Consensus 269 ~~~~~~g~~p~~~~ 282 (574)
+++.+.. +|+..-
T Consensus 168 ~~aL~l~-~~~~~r 180 (198)
T PRK10370 168 QKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHhhC-CCCccH
Confidence 9988763 444443
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=3e-06 Score=84.02 Aligned_cols=238 Identities=13% Similarity=0.097 Sum_probs=181.8
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 043999 207 SPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCL 286 (574)
Q Consensus 207 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 286 (574)
+|--..-..+...+.+.|-...|..+|+++. .|...|.+|+..|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444445668888999999999999998865 4777899999999999999999888874 7899999988
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 043999 287 IHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGET 366 (574)
Q Consensus 287 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 366 (574)
.+......-+++|.++++....+ .-..+..-..+.++++++.+.|+.-.+.. +-...+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777789999988876433 11122222334789999999999877664 44667888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 367 DKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLM 446 (574)
Q Consensus 367 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 446 (574)
+.|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999988752 2256789999999999999999999999999876 335556666777778999999999999888
Q ss_pred HHCCC-CCCHHHHHHHHHHH
Q 043999 447 QKSGF-SPDVYTYGVLIHGL 465 (574)
Q Consensus 447 ~~~~~-~~~~~~~~~li~~~ 465 (574)
.+... ..|..+...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 65311 12444444444443
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=8.4e-06 Score=71.56 Aligned_cols=119 Identities=8% Similarity=0.142 Sum_probs=57.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 043999 398 AGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGL-CMKGN--MKEA 474 (574)
Q Consensus 398 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 474 (574)
.++.+++...+++..+.. +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344444444444444432 2244445555555555555555555555555443 33444444444432 34444 2555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 475 SKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 475 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
.+++++..+.++. +..++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555544322 4444555555555555555555555555543
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.62 E-value=2.1e-05 Score=82.79 Aligned_cols=221 Identities=15% Similarity=0.085 Sum_probs=126.6
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHcccCCCCCH-----
Q 043999 102 PVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNT-FNSLLIFVIKSCSFDKGWLFFSENRCKVELDV----- 175 (574)
Q Consensus 102 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----- 175 (574)
++.+...|..|+..|...+++++|.++.++.++. .|+... |-.+...+.+.++.+++..+ .+....+.+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 4567789999999999999999999999988775 455433 33333456677776666554 3332222222
Q ss_pred --------------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043999 176 --------------YSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGL 241 (574)
Q Consensus 176 --------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 241 (574)
.++..++.+|-+.|+.++|..+++++.+.. +-|+.+.|.+...|... ++++|++++.+....
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-- 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-- 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--
Confidence 455555566666666666666666666654 23555666666666666 666666666555442
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH
Q 043999 242 VATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR-EVACNVVTYNT 320 (574)
Q Consensus 242 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ 320 (574)
+....++.++.+++.++.... |+ +++.-.++.+.+... |..--+.++-.
T Consensus 179 -------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 179 -------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVLGHREFTRLVGLLED 228 (906)
T ss_pred -------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHHhhhccchhHHHHHH
Confidence 344445555555555555431 11 122222222222221 11113344455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 043999 321 LICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFC 361 (574)
Q Consensus 321 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 361 (574)
+-..|-..+++++++.+++.+.+.. +-|.....-++..|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 5556666677777777777777654 334455555555554
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=1.4e-05 Score=70.00 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=117.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 043999 145 NSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNG 224 (574)
Q Consensus 145 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 224 (574)
..+-..+...|+-+.+..+........+.|....+..++...+.|++..|...|.+..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4455666677777777777777666666677777778888888888888888888877643 567778888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043999 225 DIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFD 304 (574)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 304 (574)
++++|..-|.+..+..+. ++...+.+.-.+.-.|+.+.|..++......+. -|...-..+.......|++++|.++-.
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888888888887775433 556677777777778888888888877776542 266666677777777888888877665
Q ss_pred HH
Q 043999 305 EM 306 (574)
Q Consensus 305 ~m 306 (574)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=1.6e-05 Score=69.56 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043999 389 NVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMK 468 (574)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 468 (574)
..+-..+...|+-+....+..+..... +.|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334444555555555555555543321 2244444455566666666666666666665543 56666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043999 469 GNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLL 548 (574)
Q Consensus 469 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 548 (574)
|++++|..-|.+..+.... ++..+|.+...|.-.|+.+.|..++......+ .-|..+-..+..+....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666666666654222 44555666666666666666666666666542 224445555555566666666666554
Q ss_pred HHH
Q 043999 549 NQM 551 (574)
Q Consensus 549 ~~m 551 (574)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 433
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=3.4e-05 Score=80.40 Aligned_cols=147 Identities=8% Similarity=-0.035 Sum_probs=104.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 043999 137 VRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSL 216 (574)
Q Consensus 137 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 216 (574)
...++..+-.|..+....|.+++|..+++.+....|.+...+..++..+.+.+++++|+...++...... -+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 3445666777777777778888888888877777777777777778888888888888888887776542 245566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 043999 217 IDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCL 286 (574)
Q Consensus 217 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 286 (574)
..++.+.|++++|..+|+++...++. +..++..+...+...|+.++|...|++..+.- .|....|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 77777788888888888887764332 46777777777778888888888887777542 3344444443
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=0.00011 Score=70.03 Aligned_cols=198 Identities=13% Similarity=0.029 Sum_probs=120.7
Q ss_pred hhHHHHHHHHcccC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 043999 157 FDKGWLFFSENRCK---VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLF 233 (574)
Q Consensus 157 ~~~A~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 233 (574)
+.++...-+.++.. ..|+...+...+.+......-..+...+.+-.+. -.....--..-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 33444455555433 4556666666666555444333333333332221 11122222233344677778888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043999 234 RKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPS-LYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVA 312 (574)
Q Consensus 234 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 312 (574)
+.+...-+. |+..+......+.+.++.++|.+.++++... .|+ ......+..+|.+.|+..+|+.+++......+.
T Consensus 330 ~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 330 QPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 777665432 5556666667777778888888888777765 444 455566777777778887887777777666555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 313 CNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSN 379 (574)
Q Consensus 313 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 379 (574)
|+..|..|..+|...|+..++..-..+ .|...|+++.|...+....+.
T Consensus 407 -dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 407 -DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 777788788777777777766554433 344567777777777666654
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=7.9e-05 Score=78.55 Aligned_cols=240 Identities=9% Similarity=0.005 Sum_probs=150.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 043999 171 VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNV-VIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYT 249 (574)
Q Consensus 171 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 249 (574)
.+.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ .+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l------------ 90 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLI------------ 90 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhh------------
Confidence 4667778888888888888888888888866664 3433 3344444466666766665544 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043999 250 VLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEM 329 (574)
Q Consensus 250 ~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 329 (574)
.......++.-...+...+... .-+...+..+..+|-+.|+.++|..+++++++..+. |+.+.|.+...|...
T Consensus 91 ---~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 91 ---DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE- 163 (906)
T ss_pred ---hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-
Confidence 2222233333333333444443 224457777888888888888888888888887754 778888888888877
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043999 330 RVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVR 409 (574)
Q Consensus 330 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 409 (574)
+.++|.+++.+.... +...+++..+.++|.++...... +...+..+. +
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------~ 211 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------R 211 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------H
Confidence 888888888776653 55666788888888888775221 222222222 2
Q ss_pred HHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043999 410 EMEER-GITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLC 466 (574)
Q Consensus 410 ~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 466 (574)
.+... |..--..++-.+-..|...++++++..+++.+.+.. +.|.....-++.+|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 22211 222233455566667777888888888888888764 445556666666654
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.00026 Score=62.12 Aligned_cols=250 Identities=14% Similarity=0.041 Sum_probs=137.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhH
Q 043999 114 DAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNK 193 (574)
Q Consensus 114 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 193 (574)
+-|.-.|++..++..-...... +.++..-..+-.+|...|++.... .+++..-.+.......+.......++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---cccccccCChHHHHHHHHHHhhCcchhHH
Confidence 4444567777776655544322 123333334445566666554332 22222222333444444444444444444
Q ss_pred HH-HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 194 AF-EVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQ 272 (574)
Q Consensus 194 A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 272 (574)
-. ++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333444433333333334444456777888888877766521 23333344455667777777777777777
Q ss_pred HCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043999 273 LNGVSPSLYTYNCLIHEYCN----EGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISP 348 (574)
Q Consensus 273 ~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~ 348 (574)
+. .+..|.+.|..++.+ .+++.+|.-+|++|-++ ..|++.+.+-...++...|++++|..+++...... ..
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 64 255566656555544 34577777777777654 45577777777777777788888888877777664 33
Q ss_pred ChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 043999 349 NVITYNKLIDGFCDAGET-DKAFRLFNQLKSN 379 (574)
Q Consensus 349 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~ 379 (574)
++.+...++..-...|.. +...+.+.++...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 455555555444444443 3344555555543
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=2.2e-05 Score=81.85 Aligned_cols=162 Identities=12% Similarity=0.030 Sum_probs=133.1
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR-SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGIL 181 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (574)
+.++..+-.|.....+.|.+++|..+++...+. .|+ ......+..++.+.+++++|+..+++.....|.+....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 456888999999999999999999999999986 454 66777888999999999999999999999989999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQ 261 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 261 (574)
..++.+.|++++|.++|+++...+ +-+..++..+...+.+.|+.++|...|++..+.-- +....|+.++ ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHHH------HHH
Confidence 999999999999999999999843 23478999999999999999999999999876522 2334444433 233
Q ss_pred HHHHHHHHHHHHC
Q 043999 262 KDGFEFYEKMQLN 274 (574)
Q Consensus 262 ~~a~~~~~~~~~~ 274 (574)
..-..+++++.-.
T Consensus 233 ~~~~~~~~~~~~~ 245 (694)
T PRK15179 233 NADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHcCcc
Confidence 4445566665533
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=1.6e-05 Score=65.86 Aligned_cols=91 Identities=9% Similarity=-0.112 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043999 426 LIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGN 505 (574)
Q Consensus 426 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 505 (574)
+...+...|++++|...|+...... +.+...|..+...+...|++++|...|+.+....+. +...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 3334444445555555444444432 333444444444444455555555555544443221 34444444444444555
Q ss_pred HHHHHHHHHHHHH
Q 043999 506 SYRALRLLGEMNE 518 (574)
Q Consensus 506 ~~~A~~~~~~m~~ 518 (574)
+++|+..|++..+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554444
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=3.8e-05 Score=67.21 Aligned_cols=219 Identities=16% Similarity=0.120 Sum_probs=137.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHcccC-CCCCHHHHHHHHHHHHhc
Q 043999 111 SIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGW-LFFSENRCK-VELDVYSFGILIKGCCEA 188 (574)
Q Consensus 111 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~-~~~~~~~~~~li~~~~~~ 188 (574)
-+-++|...|++...+. +... |-.|.......+-..+..-++.++-+ ++.+.+... ...+......-...|+..
T Consensus 46 y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~ 121 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHD 121 (299)
T ss_pred HHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcC
Confidence 34455666665543332 1211 11233333333333333333433333 233333333 334444555556678888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHH
Q 043999 189 GDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFK----NGLQKDG 264 (574)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 264 (574)
|++++|++...... +......=+..+.+..+++-|.+.+++|.+.+ +..|.+-|..++.+ .+...+|
T Consensus 122 ~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 122 GDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred CChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhH
Confidence 99999988877622 34444444556778888999999999998753 55666666666655 4568889
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 043999 265 FEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRV-QEAERLLDQMKM 343 (574)
Q Consensus 265 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~ 343 (574)
+-+|++|-++ .+|+..+.+....++...|++++|..++++.+.+... ++.+...++..-...|.. +...+.+.++..
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9999998864 5788888888888899999999999999999888666 666666666555555554 445556666665
Q ss_pred C
Q 043999 344 A 344 (574)
Q Consensus 344 ~ 344 (574)
.
T Consensus 271 ~ 271 (299)
T KOG3081|consen 271 S 271 (299)
T ss_pred c
Confidence 4
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=1.2e-05 Score=66.66 Aligned_cols=116 Identities=9% Similarity=-0.045 Sum_probs=95.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 441 EMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKG 520 (574)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 520 (574)
.++++..+. .|+. +..+...+...|++++|...|+......+. +...|..+..++...|++++|+..|++..+.+
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 355555553 3443 556778889999999999999999986543 78889999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043999 521 LVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYN 564 (574)
Q Consensus 521 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 564 (574)
+.+...+..+..++...|+.++|...+++.++. .|+...|.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 446788899999999999999999999999975 67765444
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=0.00048 Score=65.91 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=61.9
Q ss_pred hcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHH
Q 043999 153 KSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPN-VVIYTSLIDGCCKNGDIERAKM 231 (574)
Q Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 231 (574)
..|++++|+..++.+....|.|++.+......+.+.++.++|.+.++++... .|+ ......+..+|.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 4555566666665555555555555555556666666666666666655553 233 3444555555556666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043999 232 LFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFE 266 (574)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 266 (574)
++++.....+. |+..|..|..+|...|+..++..
T Consensus 396 ~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 55555544433 55555555555555555554444
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=1.3e-05 Score=66.11 Aligned_cols=105 Identities=15% Similarity=0.025 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 456 YTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVL 535 (574)
Q Consensus 456 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 535 (574)
.....+...+...|++++|.+.++.+...+.. +...|..+...+...|++++|..++++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 44455555666666777777766666654322 55666666666666677777777666666542 33455555666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043999 536 CQDGKWPEAEVLLNQMLKLGLKPSVSLYN 564 (574)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 564 (574)
...|++++|...+++.++. .|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 6667777777777666654 45554433
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00047 Score=60.10 Aligned_cols=187 Identities=16% Similarity=0.129 Sum_probs=99.0
Q ss_pred cCCHHHHHHHHHHHHH---CC-CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043999 328 EMRVQEAERLLDQMKM---AG-ISPNVIT-YNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSK 402 (574)
Q Consensus 328 ~~~~~~A~~~~~~m~~---~g-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 402 (574)
..+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++++... ++-+...-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4456666666666543 22 3333332 333444455566666666666666554 2112111111111233456666
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 403 MASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMW 482 (574)
Q Consensus 403 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 482 (574)
+|.++++.+.+.+ +.|.+++--=+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 6777666666554 334555554444455555555666655555544 45666666666666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 043999 483 ETKLEPNDVVYNMMIFGYCKEG---NSYRALRLLGEMNE 518 (574)
Q Consensus 483 ~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 518 (574)
-..+. ++..+..+...+.-.| +.+-|.+++.+.++
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 53211 3444444554433333 44556666666666
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=4.1e-05 Score=63.10 Aligned_cols=91 Identities=12% Similarity=0.052 Sum_probs=37.1
Q ss_pred HHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 043999 147 LLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDI 226 (574)
Q Consensus 147 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 226 (574)
+...+.+.|++++|...|+.+....+.+...+..+...+.+.|++++|...+++..+.+ +.+...+..+...+...|++
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCH
Confidence 33334444444444444444433333344444444444444444444444444443322 11233333334444444444
Q ss_pred HHHHHHHHHHHh
Q 043999 227 ERAKMLFRKIGE 238 (574)
Q Consensus 227 ~~A~~~~~~~~~ 238 (574)
++|...|++..+
T Consensus 102 ~~A~~~~~~al~ 113 (135)
T TIGR02552 102 ESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00075 Score=58.90 Aligned_cols=188 Identities=14% Similarity=0.075 Sum_probs=123.2
Q ss_pred cCChHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhH
Q 043999 119 SRLSDQALFYFHQMLD---SG-VRPRSNT-FNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNK 193 (574)
Q Consensus 119 ~g~~~~A~~~~~~~~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 193 (574)
..++++.++++.+++. .| ..++..+ +..+.-+....|+.+.|...++++..++|.+.-.-..-...+-..|.+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4567788888887763 23 3344433 44455666678888888888888877765544443333444556788888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 194 AFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQL 273 (574)
Q Consensus 194 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 273 (574)
|.++++.+.+.. +.|.+++-.-+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888888888765 345666766666677777777777777776654 334778888888888888888888888888776
Q ss_pred CCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 043999 274 NGVSPSLYTYNCLIHEYCNEG---KVSEGFKLFDEMRHR 309 (574)
Q Consensus 274 ~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 309 (574)
.. +.+...+..+.+.+.-.| ++.-|.+.|....+.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 52 223334444444443333 355566677766665
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.4e-06 Score=51.21 Aligned_cols=35 Identities=31% Similarity=0.563 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRS 141 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 141 (574)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.012 Score=60.74 Aligned_cols=222 Identities=13% Similarity=0.070 Sum_probs=128.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043999 118 KSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIF--VIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAF 195 (574)
Q Consensus 118 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 195 (574)
..+++.+|+....++++. .|+.. |..++.+ +.+.|+.++|..+++......+.|..|...+-..|...|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 456777888877777765 24432 2234443 457788888887777766554557777888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-C---------HHHHH
Q 043999 196 EVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNG-L---------QKDGF 265 (574)
Q Consensus 196 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~~a~ 265 (574)
.++++.... .|+......+..+|.+.+++.+-.+.--++-+. .+...+.+=++++...+.- . ..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 888877764 466666777777777777665433333333221 1123344334444443321 1 12344
Q ss_pred HHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 266 EFYEKMQLNG-VSPSLYTYNCLIHEYCNEGKVSEGFKLF-DEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKM 343 (574)
Q Consensus 266 ~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 343 (574)
+.++.+.+.+ .--...-.......+-..|++++|.+++ ....+.-...+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5555555443 1111111222233445567788888777 3333333333455555666667777777777777777777
Q ss_pred CC
Q 043999 344 AG 345 (574)
Q Consensus 344 ~g 345 (574)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 65
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=0.00015 Score=60.45 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=70.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHH
Q 043999 433 SDDMEKAFEMYSLMQKSGFSPDV---YTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN--DVVYNMMIFGYCKEGNSY 507 (574)
Q Consensus 433 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~ 507 (574)
.++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+.+......|+ ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 566666766676666542 2221 2233345666777777777777777776543322 223444566677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 508 RALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQM 551 (574)
Q Consensus 508 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 551 (574)
+|+..++..... ......+....+++.+.|++++|...|++.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777654332 223445566667777777777777777654
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=9.5e-05 Score=71.29 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
-..-.+|+..+...++++.|+++|+++.+.. |+. ...+...+...++-.+|.+++++.....|.+......-.+.+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3555666777777889999999999998864 553 334777777788888999999888877777888888888889
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPN-VVIYTSLIDGCCKNGDIERAKMLFRKIGE 238 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 238 (574)
.+.++++.|+++.+++.+. .|+ ..+|..|..+|.+.|++++|+..+..+.-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999998885 344 45899999999999999999988887754
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00014 Score=60.56 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLD 134 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~ 134 (574)
|..++..+ ..++...+...++.+.+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~ 39 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAK 39 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 33444333 24444444444444443
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=7e-06 Score=48.76 Aligned_cols=33 Identities=33% Similarity=0.574 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRP 139 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 139 (574)
++|+.++++|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.0003 Score=67.95 Aligned_cols=122 Identities=17% Similarity=0.185 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 043999 355 KLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSD 434 (574)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 434 (574)
.|+..+...++++.|..+++++.+.. |+. ...++..+...++-.+|.+++++..+.. +-+...+..-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34445555667777777777776652 333 3345566666666667777777666542 224444555555566677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 435 DMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMW 482 (574)
Q Consensus 435 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 482 (574)
+.+.|.++.+++.... +-+-.+|..|..+|.+.|++++|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777766652 3333467777777777777777776666554
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=7.1e-06 Score=49.12 Aligned_cols=33 Identities=36% Similarity=0.706 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043999 527 SYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPS 559 (574)
Q Consensus 527 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 559 (574)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666655
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.97 E-value=0.00012 Score=55.72 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhc
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEA 188 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 188 (574)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+......+.+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 5566677777788888888888777653 223455566666666677777777777766655455556666666666667
Q ss_pred CChhHHHHHHHHHHH
Q 043999 189 GDLNKAFEVLNQLEE 203 (574)
Q Consensus 189 g~~~~A~~~~~~m~~ 203 (574)
|++++|.+.++...+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 777777766666554
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.6e-05 Score=47.13 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043999 527 SYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKP 558 (574)
Q Consensus 527 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 558 (574)
+|+.++.+|.+.|+++.|..++++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 148
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=0.029 Score=56.32 Aligned_cols=106 Identities=9% Similarity=0.079 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 043999 212 IYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYC 291 (574)
Q Consensus 212 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 291 (574)
.++.+.+.+.....+++|.+.|..-.. ....+.++.+...+++-..+-+.+ +-|....-.+..++.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHH
Confidence 445555555555555555555443211 112333444444443333332222 234445556666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 292 NEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQ 340 (574)
Q Consensus 292 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 340 (574)
..|.-++|.+.|-+- +.+ ...+..|...+++.+|.++-+.
T Consensus 864 svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hhchHHHHHHHHHhc---cCc------HHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666655332 111 1233445555555555555443
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.93 E-value=1.3e-05 Score=46.44 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGV 137 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 137 (574)
++|++|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.90 E-value=0.00022 Score=69.09 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=86.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043999 380 GQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEER--GITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYT 457 (574)
Q Consensus 380 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 457 (574)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..+++..|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33446666677777777777777777777777654 2222334556777777777877888877777777777788888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043999 458 YGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKE 503 (574)
Q Consensus 458 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 503 (574)
++.|++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888887777777665555666666656555544
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.85 E-value=0.00094 Score=57.50 Aligned_cols=96 Identities=10% Similarity=0.022 Sum_probs=76.5
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR--SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGIL 181 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (574)
.....|..+...|.+.|++++|+..|++.++.+..+. ...+..+...+.+.|++++|...+++.....+.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 4457789999999999999999999999987543332 45777888889999999999999999887767778888888
Q ss_pred HHHHHhcCChhHHHHHHH
Q 043999 182 IKGCCEAGDLNKAFEVLN 199 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~ 199 (574)
...+...|+...+..-++
T Consensus 113 g~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHcCChHhHhhCHH
Confidence 888888887655544433
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.85 E-value=0.00036 Score=52.88 Aligned_cols=94 Identities=21% Similarity=0.145 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043999 458 YGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQ 537 (574)
Q Consensus 458 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 537 (574)
+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.+++..+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 334455556666666666666666554221 33555566666666666777777766666542 2233455666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 043999 538 DGKWPEAEVLLNQMLK 553 (574)
Q Consensus 538 ~g~~~~A~~~~~~m~~ 553 (574)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6777777776666653
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.84 E-value=0.00038 Score=67.50 Aligned_cols=125 Identities=12% Similarity=0.177 Sum_probs=105.4
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 043999 344 AGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSN--GQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEV 421 (574)
Q Consensus 344 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 421 (574)
.+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+.||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345667888888999998889999999999988765 222233456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043999 422 TYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMK 468 (574)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 468 (574)
+++.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998777667777776666666665
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.00062 Score=54.45 Aligned_cols=98 Identities=14% Similarity=0.026 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 043999 457 TYGVLIHGLCMKGNMKEASKLFNSMWETKLE--PNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLV--PNIASYSSTI 532 (574)
Q Consensus 457 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l~ 532 (574)
++..+...+.+.|++++|.+.|+++.+.... .....+..+..++.+.|++++|.+.++++...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555566666666666666666654211 01234555666666667777777777666653111 1133455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043999 533 GVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
.++.+.|+.++|.+.++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666667777777777766654
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=4.7e-05 Score=56.52 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=45.3
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043999 119 SRLSDQALFYFHQMLDSGVR-PRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEV 197 (574)
Q Consensus 119 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 197 (574)
+|+++.|+.+|+++.+.... |+...+-.+..++.+.|++++|..+++. ....+.+......+..++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777765321 1333344456666677777777776666 222223334444556666666666666666
Q ss_pred HHH
Q 043999 198 LNQ 200 (574)
Q Consensus 198 ~~~ 200 (574)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.76 E-value=0.00049 Score=64.23 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIK-SCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
.+|..+++..-+.+..+.|+.+|.+.++.+ ..+...|-.....-.. .++.+.|.++|+.....++.+...|..-++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467788888888888888888888887543 1223333333333223 35555577777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNV---VIYTSLIDGCCKNGDIERAKMLFRKIGE 238 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 238 (574)
.+.|+.+.|+.+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777654 22222 3666666666667777777776666655
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.0014 Score=52.37 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 043999 422 TYTILIDSFVRSDDMEKAFEMYSLMQKSGF--SPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEP--NDVVYNMMI 497 (574)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li 497 (574)
++..+...+.+.|++++|.+.+..+..... +.....+..+...+.+.|++++|.+.|+.+....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566667777777777777665421 0112345556667777777777777777776542221 244566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 043999 498 FGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
.++.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6777777777777777777765
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.00082 Score=62.74 Aligned_cols=129 Identities=13% Similarity=0.140 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 387 TYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDS-FVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGL 465 (574)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 465 (574)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555666665555322 1122233332222 22234444455555555543 344455555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 466 CMKGNMKEASKLFNSMWETKLEPN---DVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
.+.++.+.|..+|++.+.. +.++ ...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 1111 12455555555555555555555555555
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.75 E-value=0.00065 Score=58.25 Aligned_cols=81 Identities=10% Similarity=0.049 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRP--RSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
...|..+...+...|++++|+..|++.+.....| ...++..+...+.+.|++++|+..+++.....+....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4667888888888999999999999987653222 23467777788888888888888888877665556666777766
Q ss_pred HHH
Q 043999 184 GCC 186 (574)
Q Consensus 184 ~~~ 186 (574)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 666
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.73 E-value=0.0015 Score=56.22 Aligned_cols=87 Identities=17% Similarity=0.123 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043999 421 VTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPD--VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIF 498 (574)
Q Consensus 421 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 498 (574)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455566666777777777777777765432221 345666666777777777777777777664322 4555556666
Q ss_pred HHHhcCCHHH
Q 043999 499 GYCKEGNSYR 508 (574)
Q Consensus 499 ~~~~~g~~~~ 508 (574)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 6666665433
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.73 E-value=0.001 Score=64.44 Aligned_cols=103 Identities=17% Similarity=0.064 Sum_probs=79.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043999 426 LIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGN 505 (574)
Q Consensus 426 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 505 (574)
-...+...|++++|...|+++++.. +.+...|..+..+|.+.|++++|+..++++++.... +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3455677889999999999988765 556777888888888999999999999998876432 67778888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043999 506 SYRALRLLGEMNEKGLVPNIASYSSTI 532 (574)
Q Consensus 506 ~~~A~~~~~~m~~~g~~p~~~~~~~l~ 532 (574)
+++|+..|++.++. .|+.......+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 99999999998884 55544443333
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.72 E-value=6.6e-05 Score=55.73 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 043999 468 KGNMKEASKLFNSMWETKLE-PNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVP-NIASYSSTIGVLCQDGKWPEAE 545 (574)
Q Consensus 468 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 545 (574)
.|+++.|+.+++++.+.... |+...+-.+..+|.+.|++++|++++++ .+. .| +......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777765331 2344455567777777777777777776 221 22 2233334566777777777777
Q ss_pred HHHHH
Q 043999 546 VLLNQ 550 (574)
Q Consensus 546 ~~~~~ 550 (574)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 163
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.00085 Score=50.82 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=49.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043999 496 MIFGYCKEGNSYRALRLLGEMNEKGL-VPNIASYSSTIGVLCQDG--------KWPEAEVLLNQMLKLGLKPSVSLYNIL 566 (574)
Q Consensus 496 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 566 (574)
.|..+...|++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-+.+.++++|+..+++|+..||+++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444555666666666666666666 666666666666555432 334566777888877788888888887
Q ss_pred Hhhhh
Q 043999 567 YRAKN 571 (574)
Q Consensus 567 ~~~~~ 571 (574)
+....
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 77654
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00049 Score=61.77 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=83.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043999 429 SFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYR 508 (574)
Q Consensus 429 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 508 (574)
-..+.+++++|+..|.+.++.. +.|.+-|..-..+|++.|.++.|++-.+..+..+.. -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 3678899999999999998874 566777778888999999999999988888875322 36689999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 509 ALRLLGEMNEKGLVPNIASYSSTIGVL 535 (574)
Q Consensus 509 A~~~~~~m~~~g~~p~~~~~~~l~~~~ 535 (574)
|++.|++.++ +.|+..+|..-+...
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 9999999988 678887776655443
No 165
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=3.7e-05 Score=44.41 Aligned_cols=29 Identities=34% Similarity=0.827 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043999 177 SFGILIKGCCEAGDLNKAFEVLNQLEEMG 205 (574)
Q Consensus 177 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 205 (574)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 166
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.70 E-value=0.013 Score=48.88 Aligned_cols=101 Identities=11% Similarity=0.021 Sum_probs=42.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 043999 418 PSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLE-PNDVVYNMM 496 (574)
Q Consensus 418 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l 496 (574)
|+...-..|..+..+.|+..+|...|++...--+-.|....-.+.++....++..+|...++++.+..+. -++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3333334444444444444444444444443333344444444444444444444444444444433110 011122233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043999 497 IFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 497 i~~~~~~g~~~~A~~~~~~m~~ 518 (574)
...|...|++..|..-|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 3444444444444444444444
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.69 E-value=0.0014 Score=63.53 Aligned_cols=93 Identities=8% Similarity=-0.071 Sum_probs=78.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043999 391 LIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGN 470 (574)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 470 (574)
-...+...|++++|+..|+++++... .+...|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 34567788999999999999988743 367778888889999999999999999998875 4567788888899999999
Q ss_pred HHHHHHHHHHHHhCC
Q 043999 471 MKEASKLFNSMWETK 485 (574)
Q Consensus 471 ~~~A~~~~~~~~~~~ 485 (574)
+++|+..|++.++..
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998753
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00064 Score=61.05 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=85.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 043999 392 IRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNM 471 (574)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 471 (574)
.+-+.+.+++.+|+..|.+.++... -|.+-|..-..+|++.|.++.|++-.+..+... +-...+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 3457789999999999999999843 378888899999999999999999998888764 33457899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043999 472 KEASKLFNSMWETKLEPNDVVYNMMI 497 (574)
Q Consensus 472 ~~A~~~~~~~~~~~~~p~~~~~~~li 497 (574)
++|++.|++.++ +.|+..+|..=+
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHH
Confidence 999999999987 577766664433
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.68 E-value=0.013 Score=53.34 Aligned_cols=66 Identities=18% Similarity=0.121 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-h---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043999 175 VYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVV-I---YTSLIDGCCKNGDIERAKMLFRKIGELGLV 242 (574)
Q Consensus 175 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 242 (574)
...+-.....+.+.|++++|.+.|+++...- |+.. . .-.++.++.+.+++++|...+++..+..+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3333344555566777777777777776642 2221 1 134556667777777777777777665544
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.68 E-value=0.0025 Score=50.27 Aligned_cols=105 Identities=22% Similarity=0.110 Sum_probs=64.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 043999 461 LIHGLCMKGNMKEASKLFNSMWETKLEPN--DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN----IASYSSTIGV 534 (574)
Q Consensus 461 li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~ 534 (574)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.... .|+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 34455667777777777777777665543 335556667777777777777777777664 233 1222223346
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHhhhh
Q 043999 535 LCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYRAKN 571 (574)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 571 (574)
+...|+.++|..++-..+. ++...|.-=|..|+
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6667777777777766552 34446666666654
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.68 E-value=0.016 Score=54.34 Aligned_cols=20 Identities=25% Similarity=0.116 Sum_probs=10.7
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 043999 183 KGCCEAGDLNKAFEVLNQLE 202 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~ 202 (574)
..|-..|++++|.+.|.+..
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHH
Confidence 44555566666666665543
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.68 E-value=0.0025 Score=50.31 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCC---CHHHHHHHHHH
Q 043999 110 ESIIDAHLKSRLSDQALFYFHQMLDSGVRPR--SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVEL---DVYSFGILIKG 184 (574)
Q Consensus 110 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~ 184 (574)
-.+..++-..|+.++|+.+|++.+..|.... ...+-.+.+.+...|++++|..++++.....|. +......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3455677788999999999999999886543 334555667788889999999888887765443 34444445567
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 043999 185 CCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCC 221 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 221 (574)
+...|+.++|++.+-.... ++...|.--|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 7778888888888766554 23335555554443
No 173
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.008 Score=56.48 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=127.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043999 250 VLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEM 329 (574)
Q Consensus 250 ~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 329 (574)
.....+.+..++.+|+..+...++.... +..-|..-+..+...|++++|.--.+.-.+.... ....+.-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 3456677777777788777777776422 3445555566666667777776555444333211 2223333334444444
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHhcCChHHHHHH
Q 043999 330 RVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQ-SPSVVTYNVLI-RAFSKAGNSKMASDL 407 (574)
Q Consensus 330 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li-~~~~~~g~~~~A~~~ 407 (574)
...+|...++.-. .+ ....++..++....... +|...+|..+- .++.-.|+.++|.+.
T Consensus 132 ~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4445554444111 00 01111112222211111 12233333322 223445556666555
Q ss_pred HHHHHHCCCCCCHhHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHhcCCHH
Q 043999 408 VREMEERGITPSEVTYTILID--SFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVL-------------IHGLCMKGNMK 472 (574)
Q Consensus 408 ~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------------i~~~~~~g~~~ 472 (574)
-....+.... + .+...++ ++--.++.+.|...|++.++. .|+...-..+ ..-..+.|++.
T Consensus 192 a~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 192 AIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 5544443211 1 1222222 223345555666666555543 2333221111 12234566666
Q ss_pred HHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 043999 473 EASKLFNSMWET---KLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN-IASYSSTIGVLCQDGKWPEAEVLL 548 (574)
Q Consensus 473 ~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 548 (574)
+|.+.+.+.+.. ..+|+...|.....+..+.|+..+|+.--++..+. .|. ...|..-..++...++|++|.+-+
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666653 22334445555555556666666666666666552 111 012222223333456666666666
Q ss_pred HHHHHc
Q 043999 549 NQMLKL 554 (574)
Q Consensus 549 ~~m~~~ 554 (574)
++..+.
T Consensus 345 ~~a~q~ 350 (486)
T KOG0550|consen 345 EKAMQL 350 (486)
T ss_pred HHHHhh
Confidence 666543
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.67 E-value=0.0018 Score=53.01 Aligned_cols=87 Identities=11% Similarity=0.030 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 430 FVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRA 509 (574)
Q Consensus 430 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 509 (574)
+...|++++|.++|+.+.... +.+..-|..|.-++-..|++++|+..|.......+. |+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 344444444444444444432 223333444444444444444444444444443322 344444444444444444444
Q ss_pred HHHHHHHHH
Q 043999 510 LRLLGEMNE 518 (574)
Q Consensus 510 ~~~~~~m~~ 518 (574)
.+.|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 444444443
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0039 Score=51.13 Aligned_cols=90 Identities=10% Similarity=-0.097 Sum_probs=40.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043999 391 LIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGN 470 (574)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 470 (574)
+...+...|++++|..+|+-+...... +..-|..|.-++-..|++++|+..|....... +.|+..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 333344445555555555444443211 33334444444444455555555554444443 2344444444444555555
Q ss_pred HHHHHHHHHHHH
Q 043999 471 MKEASKLFNSMW 482 (574)
Q Consensus 471 ~~~A~~~~~~~~ 482 (574)
.+.|.+.|+..+
T Consensus 119 ~~~A~~aF~~Ai 130 (157)
T PRK15363 119 VCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
No 176
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.65 E-value=0.00077 Score=51.04 Aligned_cols=75 Identities=15% Similarity=0.258 Sum_probs=39.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 043999 287 IHEYCNEGKVSEGFKLFDEMRHREV-ACNVVTYNTLICGLCKEM--------RVQEAERLLDQMKMAGISPNVITYNKLI 357 (574)
Q Consensus 287 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~A~~~~~~m~~~g~~~~~~~~~~li 357 (574)
|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544322 2234455555565555666666666555
Q ss_pred HHHH
Q 043999 358 DGFC 361 (574)
Q Consensus 358 ~~~~ 361 (574)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5543
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.64 E-value=0.0041 Score=63.12 Aligned_cols=143 Identities=16% Similarity=0.119 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHHhc--C---ChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 043999 380 GQSPSVVTYNVLIRAFSKA--G---NSKMASDLVREMEERGITPS-EVTYTILIDSFVRSD--------DMEKAFEMYSL 445 (574)
Q Consensus 380 g~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g--------~~~~A~~~~~~ 445 (574)
..+.+...|...+.+.... + ....|..+|++..+. .|+ ...+..+..++.... ++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3456777777777764432 2 255777777777775 333 334444333332211 12223333333
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043999 446 MQKS-GFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN 524 (574)
Q Consensus 446 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 524 (574)
.... ..+.+...|.++.-.....|++++|...++++++. .|+...|..+...+...|+.++|.+.+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 2221 12233455555544455556666666666666654 34555666666666666666666666666665 3444
Q ss_pred HHHH
Q 043999 525 IASY 528 (574)
Q Consensus 525 ~~~~ 528 (574)
..+|
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 4443
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.018 Score=54.15 Aligned_cols=153 Identities=14% Similarity=0.004 Sum_probs=75.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHH-------------H
Q 043999 324 GLCKEMRVQEAERLLDQMKMAGISPNVITYNKLID--GFCDAGETDKAFRLFNQLKSNGQSPSVVT-------------Y 388 (574)
Q Consensus 324 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-------------~ 388 (574)
++...|++++|.+.--..++.. ..+. +..+++ ++.-.++.+.|...|++.+..+ |+... +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 3344555555555555544432 1111 111221 2233455566666666555432 22211 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHH
Q 043999 389 NVLIRAFSKAGNSKMASDLVREMEER---GITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYT--YGVLIH 463 (574)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~ 463 (574)
..-.+-..+.|++..|.+.+.+.+.. +..|+...|........+.|+.++|+.--+...+.. +..+ |..-..
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~ 329 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRAN 329 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHH
Confidence 11123345667777777777776643 233444555555556666777777776666665421 1122 222223
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 043999 464 GLCMKGNMKEASKLFNSMWET 484 (574)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~~~ 484 (574)
++.-.++|++|.+-+++..+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344456677777766666654
No 179
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.59 E-value=0.075 Score=50.89 Aligned_cols=203 Identities=15% Similarity=0.155 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHh----cCChHHHHHHHHHHHHCCCCCC
Q 043999 351 ITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNV-------LIRAFSK----AGNSKMASDLVREMEERGITPS 419 (574)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-------li~~~~~----~g~~~~A~~~~~~m~~~~~~p~ 419 (574)
.++..++....+.++...|...+.-+... .|+...-.. +-+..+. .-+...=+.++++....++ |
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--D 374 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--D 374 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--c
Confidence 45566666666777777777766665543 233221111 1111110 1112233344444444332 2
Q ss_pred Hh-HHHHHH---HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHhCCCC
Q 043999 420 EV-TYTILI---DSFVRSDD-MEKAFEMYSLMQKSGFSPDVYTYGVLIH----GLCM---KGNMKEASKLFNSMWETKLE 487 (574)
Q Consensus 420 ~~-~~~~li---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~----~~~~---~g~~~~A~~~~~~~~~~~~~ 487 (574)
.. ....|+ .-+.+.|. -++|.++++.+.+-. +-|...-|.+.. .|.+ ...+..-..+-+-+.+.|+.
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 11 111122 22344454 677777777776642 233333222211 1211 11233333333333445655
Q ss_pred CC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043999 488 PN----DVVYNMMIFG--YCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVS 561 (574)
Q Consensus 488 p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 561 (574)
|- ...-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++.++ .|+..
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~ 526 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNER 526 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchh
Confidence 52 3344555544 4457788777765555555 6778888877777777778888888877765 45555
Q ss_pred HHHH
Q 043999 562 LYNI 565 (574)
Q Consensus 562 ~~~~ 565 (574)
+++.
T Consensus 527 ~~ds 530 (549)
T PF07079_consen 527 MRDS 530 (549)
T ss_pred hHHH
Confidence 5543
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.56 E-value=0.02 Score=52.14 Aligned_cols=56 Identities=7% Similarity=0.039 Sum_probs=30.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 286 LIHEYCNEGKVSEGFKLFDEMRHRE--VACNVVTYNTLICGLCKEMRVQEAERLLDQM 341 (574)
Q Consensus 286 li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 341 (574)
+.+.|.+.|.+..|..-++.+.+.= .+........++.+|.+.|..++|......+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4455666666666666666665541 1222334445555666666666665555443
No 181
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.54 E-value=0.089 Score=50.29 Aligned_cols=443 Identities=14% Similarity=0.133 Sum_probs=215.0
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHH
Q 043999 102 PVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGIL 181 (574)
Q Consensus 102 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (574)
-|.|..+|-.||.-|..+|.+++..+++++|... ++--..+|...+++-...+++.....+|.+.... ..+...|..-
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~l~ldLW~lY 115 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-SLNLDLWMLY 115 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-hccHhHHHHH
Confidence 3567899999999999999999999999999764 3334567888888887888899999999887765 3346666666
Q ss_pred HHHHHhcCCh------hHHHHHHHHHHH-CCCCCCH-HhHHHHHHHH---HhcC------CHHHHHHHHHHHHhCCCCCC
Q 043999 182 IKGCCEAGDL------NKAFEVLNQLEE-MGFSPNV-VIYTSLIDGC---CKNG------DIERAKMLFRKIGELGLVAT 244 (574)
Q Consensus 182 i~~~~~~g~~------~~A~~~~~~m~~-~g~~p~~-~~~~~li~~~---~~~g------~~~~A~~~~~~~~~~~~~~~ 244 (574)
+.--.+.+.. ....+.|+-... .++.|-. ..|+..+.-+ -..| ++|...+.+.+++.-.+..-
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 6544443311 112233433332 3444433 3444444332 2233 34455556666655322211
Q ss_pred hhhHHHH------HHHHH-h------cCCHHHHHHHHHHHHH--CCCC----CCHhhHHH-----------HHHHHHhcC
Q 043999 245 QHTYTVL------ICGLF-K------NGLQKDGFEFYEKMQL--NGVS----PSLYTYNC-----------LIHEYCNEG 294 (574)
Q Consensus 245 ~~~~~~l------i~~~~-~------~g~~~~a~~~~~~~~~--~g~~----p~~~~~~~-----------li~~~~~~g 294 (574)
...|+-. ++-.. + .--+..|...+++... .|.+ .+..+++- .|..-...|
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 1122211 00000 0 0112233444444331 1221 11112221 111000000
Q ss_pred -----C-HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 043999 295 -----K-VS-EGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETD 367 (574)
Q Consensus 295 -----~-~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 367 (574)
+ .. ...-++++.... +.-....|----..+...++-+.|++..+.-... .|+.. -.+-..|.-..+-+
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~--~~lse~yel~nd~e 350 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLT--MFLSEYYELVNDEE 350 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchh--eeHHHHHhhcccHH
Confidence 0 00 000011111100 0001112222222223344444555444332221 22211 11222333334444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 368 KAFRLFNQLKSNGQSPSVVTYNVLIRAFSK---AGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYS 444 (574)
Q Consensus 368 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 444 (574)
.....|+...+. ...-...+..-.. -|+++.-.+++-+- ...-..+|...++...+..-++.|..+|-
T Consensus 351 ~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr----~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 351 AVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKR----INKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHH----HhhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444444433220 0000001110000 11121111111110 11123456677777777777788888888
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 445 LMQKSG-FSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVY-NMMIFGYCKEGNSYRALRLLGEMNEKGLV 522 (574)
Q Consensus 445 ~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 522 (574)
+..+.+ ..+++.++++++..++ .|+..-|.++|+--+.. -||...| +..+.-+..-++-+.|..+|+..+++ +.
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~ 497 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LE 497 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HH
Confidence 887776 5677777777777555 45667777777765543 3343333 44555666777778888888866654 33
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043999 523 PN--IASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNIL 566 (574)
Q Consensus 523 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 566 (574)
.+ ...|..+|+--..-|+...+..+=++|.+. -|-..+....
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF 541 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVF 541 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHH
Confidence 33 467777777777778887777777777654 4444443333
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.53 E-value=0.00035 Score=49.32 Aligned_cols=62 Identities=27% Similarity=0.371 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043999 502 KEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNIL 566 (574)
Q Consensus 502 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 566 (574)
+.|++++|+++|+++.+.. +.+...+..+..+|.+.|++++|..+++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4566666666666665541 224455555666666666666666666666644 4554444443
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.0054 Score=62.26 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 245 QHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR 309 (574)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 309 (574)
...|..+.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344444444444455555555555555554 244555555555555556666665555555444
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0029 Score=54.25 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 456 YTYGVLIHGLCMKGNMKEASKLFNSMWETKLEP--NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIG 533 (574)
Q Consensus 456 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 533 (574)
..|..+...+...|++++|+..|++.+.....| ...+|..+...+...|++++|+..+++..+.. +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555666677777777777666542222 12356666666777777777777777766531 222344444444
Q ss_pred HHH-------hcCCHHHHHHHHHH
Q 043999 534 VLC-------QDGKWPEAEVLLNQ 550 (574)
Q Consensus 534 ~~~-------~~g~~~~A~~~~~~ 550 (574)
.+. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 444 66666655444443
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.45 E-value=0.0016 Score=60.78 Aligned_cols=285 Identities=13% Similarity=0.053 Sum_probs=142.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHH--HC--CC-CCCHhhHHHHHH
Q 043999 218 DGCCKNGDIERAKMLFRKIGELGLVATQ----HTYTVLICGLFKNGLQKDGFEFYEKMQ--LN--GV-SPSLYTYNCLIH 288 (574)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~--~~--g~-~p~~~~~~~li~ 288 (574)
.-+|+.|+......+|+..++.|.. |. ..|..|.++|.-.+++++|+++...=+ .+ |- .-...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478888888888888888777644 32 335555566666677777776543211 00 00 001222233444
Q ss_pred HHHhcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 043999 289 EYCNEGKVSEGFKLFDEM----RHREVA-CNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDA 363 (574)
Q Consensus 289 ~~~~~g~~~~A~~~~~~m----~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 363 (574)
.+--.|.+++|.-...+- .+.|-. .....+..+...|...|+.-... .-.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-----------
Confidence 444455666655433221 121110 01222333333443333210000 0000010111100
Q ss_pred CCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCC-CCHhHHHHHHHHHHhc
Q 043999 364 GETDKAFRLFNQLKS----NGQ-SPSVVTYNVLIRAFSKAGNSKMASDLVREME----ERGIT-PSEVTYTILIDSFVRS 433 (574)
Q Consensus 364 g~~~~A~~~~~~~~~----~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~ 433 (574)
..++.|.++|.+-.+ .|- -.-...|..|.+.|.-.|+++.|+...+.-. +-|-. .....+..+.+++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 012333344332111 110 0112345555566666777777776654422 22211 1234566777778888
Q ss_pred CCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhc
Q 043999 434 DDMEKAFEMYSLMQ----KSGF-SPDVYTYGVLIHGLCMKGNMKEASKLFNSMWET-----KLEPNDVVYNMMIFGYCKE 503 (574)
Q Consensus 434 g~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~ 503 (574)
|+++.|.+.|+... +.|- .....+..+|...|.-..++++|+.++.+-+.. +..-....+.+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 88888888777643 2221 223345667777777777788888777754321 1122456777888888888
Q ss_pred CCHHHHHHHHHHHHH
Q 043999 504 GNSYRALRLLGEMNE 518 (574)
Q Consensus 504 g~~~~A~~~~~~m~~ 518 (574)
|..++|+.+.+.-++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888777666543
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.41 E-value=0.0042 Score=53.45 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043999 470 NMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGN 505 (574)
Q Consensus 470 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 505 (574)
+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345678888888888888888888888888865543
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.40 E-value=0.003 Score=59.09 Aligned_cols=133 Identities=12% Similarity=0.025 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCH
Q 043999 421 VTYTILIDSFVRSDDMEKAFEMYSLMQ----KSGFS-PDVYTYGVLIHGLCMKGNMKEASKLFNSMWET----KL-EPND 490 (574)
Q Consensus 421 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~ 490 (574)
..|..|.+.|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.|+..... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456777777888899999998776532 22321 12346778889999999999999998875432 21 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 491 VVYNMMIFGYCKEGNSYRALRLLGEMNEK-----GLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 491 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
...-+|.+.|.-..++++|+.++.+-+.- ...-....+.++..++...|..++|..+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45567888888888999999988764321 1112456788999999999999999998877764
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.40 E-value=0.0083 Score=56.30 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQML 133 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 133 (574)
..|....+.|-..|++++|.+.|.+..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 457777777777788888877777764
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.19 Score=50.79 Aligned_cols=155 Identities=12% Similarity=0.008 Sum_probs=74.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043999 189 GDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGEL-GLVATQHTYTVLICGLFKNGLQKDGFEF 267 (574)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~ 267 (574)
|++++|.+++-+|.++. ..|..+.+.||+-...++++.-... +-..-..+|+.+...+.....+++|.++
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665554421 2344555566665555554321100 0001133555555555555556666555
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 268 YEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGIS 347 (574)
Q Consensus 268 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 347 (574)
|..-.. -...+.+|.+...+++-+.+-..+ +-+....-.+...+.+.|.-++|.+.|-+- + .
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~ 880 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-L 880 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-C
Confidence 544221 112344444444444433333222 224444555666677777777776665332 1 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 348 PNVITYNKLIDGFCDAGETDKAFRLFNQ 375 (574)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~~~~~ 375 (574)
|. .-+..|...+++.+|.++-+.
T Consensus 881 pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 PK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred cH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 11 233445555666666655443
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.38 E-value=0.00045 Score=48.76 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=18.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcc
Q 043999 119 SRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENR 168 (574)
Q Consensus 119 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 168 (574)
.|++++|++.|+++.+.. +-+...+..+..++.+.|++++|..+++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444332 1133333333344444444444444444433
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.37 E-value=0.0011 Score=46.31 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=31.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 497 IFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 497 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
...+...|++++|.+.|+++++.. +-+...+..+..++.+.|++++|..+++++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555566666666666666542 223455555555666666666666666666543
No 192
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0049 Score=53.04 Aligned_cols=103 Identities=21% Similarity=0.325 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043999 314 NVVTYNTLICGLCK-----EMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTY 388 (574)
Q Consensus 314 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 388 (574)
+..+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 45555555555543 45566666666777777777777777777776654 2211 01111111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 043999 389 NVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDD 435 (574)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 435 (574)
..-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 112 ---F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ---FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1001 12334566777777777777777777777777755443
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.013 Score=53.26 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=87.2
Q ss_pred HHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCC
Q 043999 165 SENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKN---GDIERAKMLFRKIGELGL 241 (574)
Q Consensus 165 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~ 241 (574)
+.-....|.|...|-.|...|...|+++.|...|.+..+.. .+|...+..+..++... .+..++..+|+++...+.
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 33333457889999999999999999999999999888753 24666666666665543 245688888998888765
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 043999 242 VATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLI 287 (574)
Q Consensus 242 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 287 (574)
. ++.+...|...+...|++.+|...|+.|++.. |....+..+|
T Consensus 225 ~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~i 267 (287)
T COG4235 225 A-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLI 267 (287)
T ss_pred c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHH
Confidence 4 67777778888888899999999988888763 3333444444
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.0011 Score=46.29 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=22.5
Q ss_pred HHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043999 151 VIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLE 202 (574)
Q Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 202 (574)
+.+.|++++|.+.|+++....|.+...+..+..++.+.|++++|...|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444433344444444444444444444444444443
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.019 Score=52.23 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 043999 452 SPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEG---NSYRALRLLGEMNEKGLVPNIASY 528 (574)
Q Consensus 452 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~ 528 (574)
+-|...|-.|...|...|+++.|..-|.+..+... +++..+..+..++.... ...++.++|++++..+ +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 34445555555555555555555555555544321 13444444444433221 2334555555555432 1133334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 529 SSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 529 ~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
..+...+...|++.+|...|+.|++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444455555555555555555553
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.18 Score=47.83 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=35.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043999 427 IDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNS 506 (574)
Q Consensus 427 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 506 (574)
+.-+...|+...|.++-.+.. .||...|...+.+++..++|++-.++-.. +-.+.-|...+.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333444444444444433332 34444455555555555555544443221 11224444555555555555
Q ss_pred HHHHHHHHH
Q 043999 507 YRALRLLGE 515 (574)
Q Consensus 507 ~~A~~~~~~ 515 (574)
.+|..+..+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555544443
No 197
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.26 E-value=0.2 Score=48.17 Aligned_cols=243 Identities=14% Similarity=0.219 Sum_probs=141.8
Q ss_pred CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 043999 276 VSPSLY-TYNCLIHEYCNEGKVSEGFKLFDEMRHREVAC----NVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNV 350 (574)
Q Consensus 276 ~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~ 350 (574)
+.|+-. ....+...+.+ +.+++..+.+.+....+.+ =..+|..++....+.++...|.+.+.-+... .|+.
T Consensus 256 v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~ 331 (549)
T PF07079_consen 256 VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRI 331 (549)
T ss_pred cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcc
Confidence 445433 22334444433 5555555555543332111 3567888888999999999999998887654 3443
Q ss_pred hhH-------HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCC-hHHHHHHHHHHHHCC
Q 043999 351 ITY-------NKLIDGFCD----AGETDKAFRLFNQLKSNGQSPSVVTYNVLI---RAFSKAGN-SKMASDLVREMEERG 415 (574)
Q Consensus 351 ~~~-------~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~m~~~~ 415 (574)
..- ..+-+..+. .-+..+=+.+|+.....++... ..-..|+ .-+-+.|. -++|+.+++...+-.
T Consensus 332 svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft 410 (549)
T PF07079_consen 332 SVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT 410 (549)
T ss_pred hhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Confidence 321 233344441 1223344556666665533311 1112222 23445555 788999999887642
Q ss_pred CCCCHhHHHHH----HHHHH---hcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 043999 416 ITPSEVTYTIL----IDSFV---RSDDMEKAFEMYSLMQKSGFSPDVY----TYGVLIHG--LCMKGNMKEASKLFNSMW 482 (574)
Q Consensus 416 ~~p~~~~~~~l----i~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~--~~~~g~~~~A~~~~~~~~ 482 (574)
.-|...-+.+ =..|. ....+..-..+-+.+.+.|++|-.. .-|.|.++ +...|++.++.-.-.=..
T Consensus 411 -~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 411 -NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1133222222 22232 2234555555656667788777543 33444433 457899998876544443
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043999 483 ETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSST 531 (574)
Q Consensus 483 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 531 (574)
+ +.|++.+|..++-++....++++|..++.. ++|+..++++-
T Consensus 490 ~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 490 K--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSK 531 (549)
T ss_pred H--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHH
Confidence 3 689999999999999999999999999876 56777776553
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.24 E-value=0.088 Score=46.59 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043999 179 GILIKGCCEAGDLNKAFEVLNQLEEMGFS--PNVVIYTSLIDGCCKNGDIERAKMLFRKIGELG 240 (574)
Q Consensus 179 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 240 (574)
-.....+...|++++|.+.|+.+...-.. --....-.++.++.+.|++++|...+++..+..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33445556667777777777776654211 112344456666667777777777777766544
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.24 E-value=0.0015 Score=46.17 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 043999 490 DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDG-KWPEAEVLLNQMLK 553 (574)
Q Consensus 490 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 553 (574)
..+|..+...+...|++++|+..|++.++.+ +.+...|..+..++.+.| ++++|.+.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555531 123344555555555555 45555555555543
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.2 Score=47.50 Aligned_cols=111 Identities=17% Similarity=0.206 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 043999 281 YTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGF 360 (574)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 360 (574)
.+.+..+.-+...|+...|.++-.+. .+ ||..-|...+.+++..+++++-.++... +-++.-|..++..+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 35556677777889888888876654 33 4888899999999999999887775432 22457788899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043999 361 CDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREM 411 (574)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 411 (574)
.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-.+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888662 1245677888999999987765443
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.21 E-value=0.0019 Score=45.63 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 043999 454 DVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEG-NSYRALRLLGEMNE 518 (574)
Q Consensus 454 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 518 (574)
+..+|..+...+...|++++|+..|++.++.... +...|..+..+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4678889999999999999999999999997543 6888999999999999 79999999999887
No 202
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.20 E-value=0.3 Score=48.86 Aligned_cols=411 Identities=12% Similarity=0.093 Sum_probs=209.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSN-TFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
+...|++||..--...+.+.+..++..++.. -|..+ -|.....--.+.|..+.+.++|++....++-.+..|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4456888887766666677778888888754 34433 35555555668899999999999998888888888887776
Q ss_pred HHHh-cCChhHHHHHHHHHHHC-CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---
Q 043999 184 GCCE-AGDLNKAFEVLNQLEEM-GFS-PNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFK--- 257 (574)
Q Consensus 184 ~~~~-~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 257 (574)
.++. .|+.+...+.|+..... |.. -....|...|.---.++++.....+++++++.. ...++....-|.+
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHh
Confidence 6654 57777888888887753 321 134567778887788899999999999988742 2223332222221
Q ss_pred c------CCHHHHHHHHHHHHHC---C-CCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 258 N------GLQKDGFEFYEKMQLN---G-VSPSLYTYNCLIHEYCN-EGKVSEGFKLFDEMRHREVACNVVTYNTLICGLC 326 (574)
Q Consensus 258 ~------g~~~~a~~~~~~~~~~---g-~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 326 (574)
. ...+++.++-...... + ..+.......-++--.. .+..+++.....+.... .-..+-
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~-----------~~~~~~ 266 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI-----------HEKVYQ 266 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH-----------HHHHHH
Confidence 1 1122222222111110 0 00011111111110000 01111111111111000 001111
Q ss_pred hcCCHHHHHHHHHHHHHCC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043999 327 KEMRVQEAERLLDQMKMAG-------ISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAG 399 (574)
Q Consensus 327 ~~~~~~~A~~~~~~m~~~g-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 399 (574)
......+....|+.-++.. .+++..+|...++.-.+.|+.+.+.-.|+...-- +..=...|-..+.-....|
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSG 345 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcC
Confidence 1222222233333322211 1233456666666777777777777777766431 1111223333344444447
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH--
Q 043999 400 NSKMASDLVREMEERGITPSEVTYTILIDSF-VRSDDMEKAFEMYSLMQKSGFSPDV-YTYGVLIHGLCMKGNMKEAS-- 475 (574)
Q Consensus 400 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~-- 475 (574)
+.+-|..++....+--.+ +......+-..+ -..|++..|..+++.+...- |.. ..-..-+....+.|+.+.+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred chhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 777666666555443222 222222222222 33467777777777776542 332 22233344555666666666
Q ss_pred -HHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043999 476 -KLFNSMWETKLEPNDVVYNMMIFG-----YCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDG 539 (574)
Q Consensus 476 -~~~~~~~~~~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 539 (574)
+++........ +......+.-- +.-.++.+.|..++.++.+. .+++...|..+++.+...+
T Consensus 423 ~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 423 NELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 33333222111 21222222211 22356777777777777775 5556666777776665544
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.13 E-value=0.12 Score=43.22 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHcccC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 140 RSNTFNSLLIFVIKSCSFDKGWLFFSENRCK-VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 140 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
++.---.|...+...|+..||...|++.... +..|....-.+.++....+++..|...++.+.+
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 3333333444444444444444444444444 344444444444444444444444444444443
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.08 E-value=0.024 Score=52.09 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 043999 458 YGVLIHGLCMKGNMKEASKLFNSMWETKLEPN--DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN---IASYSSTI 532 (574)
Q Consensus 458 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~ 532 (574)
|...+..+.+.|++++|...|+.+++..+... ...+-.+...|...|++++|...|+.+.+. .+.+ ...+..+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHHHHHHH
Confidence 33333333445666666666666665422211 234555666666666666666666666653 1111 23333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043999 533 GVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
..+...|+.++|..++++.++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555666666666666666654
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.06 E-value=0.28 Score=46.17 Aligned_cols=291 Identities=13% Similarity=0.100 Sum_probs=159.2
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 108 LYESIIDAHLK--SRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFV--IKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 108 ~~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
-|.+|-.++.. .|+-..|.++-.+..+. +..|....-.|+.+. .-.|++++|.+-|+.|.. |..+-..=++
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHH
Confidence 46666655554 46777777776665432 334555555565443 356888889888888876 4444333333
Q ss_pred HH----HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChh--hHHHHHHHHH
Q 043999 184 GC----CEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELG-LVATQH--TYTVLICGLF 256 (574)
Q Consensus 184 ~~----~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~li~~~~ 256 (574)
++ -+.|+.+.|...-++.-+.- +.-...+...+...|..|+++.|+++.+.-.... +.++.. .-..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33 35688888888877766542 1134577788888888888888888887654432 222322 1122222111
Q ss_pred ---hcCCHHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043999 257 ---KNGLQKDGFEFYEKMQLNGVSPSLYTY-NCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQ 332 (574)
Q Consensus 257 ---~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 332 (574)
-..+...|.+.-.+..+ +.||..-- ..-...+.+.|++.++-.+++.+-+..+.|+.. .+..+.+.|+.
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt- 310 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT- 310 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc-
Confidence 12234444444444433 24554322 233456777777777777777777765554431 22223344442
Q ss_pred HHHHHHHHHHHC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHH
Q 043999 333 EAERLLDQMKMA-GISP-NVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFS-KAGNSKMASDLVR 409 (574)
Q Consensus 333 ~A~~~~~~m~~~-g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~ 409 (574)
++.-+++..+. ..+| +....-.+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.
T Consensus 311 -a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 311 -ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 22222221110 1122 3444455556666667776666555555443 455555555554432 3466666666666
Q ss_pred HHHHC
Q 043999 410 EMEER 414 (574)
Q Consensus 410 ~m~~~ 414 (574)
+..+.
T Consensus 388 qav~A 392 (531)
T COG3898 388 QAVKA 392 (531)
T ss_pred HHhcC
Confidence 66554
No 206
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.98 E-value=0.37 Score=46.28 Aligned_cols=408 Identities=11% Similarity=0.034 Sum_probs=215.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH--H----HHHHHHcccC---CCCCHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDK--G----WLFFSENRCK---VELDVY 176 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~--A----~~~~~~~~~~---~~~~~~ 176 (574)
+.+|..-+.+=....++.....+|.+.+... .+...|...+.-..+.+..-+ + .+.|+-.... .+....
T Consensus 76 ~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~ 153 (660)
T COG5107 76 EHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSEN 153 (660)
T ss_pred cHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccc
Confidence 4678888988888899999999999998764 356677777766555443221 1 1223322221 334455
Q ss_pred HHHHHHHHHHh---cC------ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh---------cC----CHHHHHHHHH
Q 043999 177 SFGILIKGCCE---AG------DLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCK---------NG----DIERAKMLFR 234 (574)
Q Consensus 177 ~~~~li~~~~~---~g------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---------~g----~~~~A~~~~~ 234 (574)
.|+..+..+-. .| ++|..++.+.+|+...+..=...|+-.-.--.. .| -+-.|.+.++
T Consensus 154 ~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yq 233 (660)
T COG5107 154 YWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQ 233 (660)
T ss_pred hHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 66666655432 23 455666677777654222112233321111000 01 1334555555
Q ss_pred HHHh--CCCCC----ChhhHHH-----------HHHHHHhcC-----C-HHHHH-HHHHHHHHCCCCCCHhhHHHHHHHH
Q 043999 235 KIGE--LGLVA----TQHTYTV-----------LICGLFKNG-----L-QKDGF-EFYEKMQLNGVSPSLYTYNCLIHEY 290 (574)
Q Consensus 235 ~~~~--~~~~~----~~~~~~~-----------li~~~~~~g-----~-~~~a~-~~~~~~~~~g~~p~~~~~~~li~~~ 290 (574)
++.. .|+.. +..+++- .|..-...| + ..+-+ -+++..... +.-....|.---..+
T Consensus 234 e~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~ 312 (660)
T COG5107 234 EIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYL 312 (660)
T ss_pred HHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 5432 23211 1112221 111111110 0 00000 011111110 011122222222333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH---hcCCHH
Q 043999 291 CNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFC---DAGETD 367 (574)
Q Consensus 291 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~---~~g~~~ 367 (574)
...++-..|++.... |.+..+..--.+...|.-.++-++....|+..... ...--..+..-+ ..|+++
T Consensus 313 ~~isd~q~al~tv~r----g~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e 383 (660)
T COG5107 313 IGISDKQKALKTVER----GIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFE 383 (660)
T ss_pred hhccHHHHHHHHHHh----cccCCCchheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCcc
Confidence 445555666555433 33322222222333444455555555556554321 000000011000 123332
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 368 KAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERG-ITPSEVTYTILIDSFVRSDDMEKAFEMYSLM 446 (574)
Q Consensus 368 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 446 (574)
..-+++-+-. ..-...|...++.-.+..-.+.|..+|-+..+.+ +.+++..+++++..++ .|+...|..+|+.-
T Consensus 384 ~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelG 458 (660)
T COG5107 384 YSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELG 458 (660)
T ss_pred ccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHH
Confidence 2222221111 1235667888888888888999999999999888 6678888999998665 57788899999876
Q ss_pred HHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043999 447 QKSGFSPDVYT-YGVLIHGLCMKGNMKEASKLFNSMWETKLEPN--DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVP 523 (574)
Q Consensus 447 ~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 523 (574)
..+ -||... -+..+.-+...++-+.|..+|+..+.+ +..+ ...|..+|.--..-|+...+..+-++|.+ ..|
T Consensus 459 l~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~p 533 (660)
T COG5107 459 LLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVP 533 (660)
T ss_pred HHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcC
Confidence 654 344433 345666778889999999999976653 2223 56789999988899999999998888887 355
Q ss_pred CHHHHHHHHHHH
Q 043999 524 NIASYSSTIGVL 535 (574)
Q Consensus 524 ~~~~~~~l~~~~ 535 (574)
...+.....+-|
T Consensus 534 Qen~~evF~Sry 545 (660)
T COG5107 534 QENLIEVFTSRY 545 (660)
T ss_pred cHhHHHHHHHHH
Confidence 554444444433
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.97 E-value=0.21 Score=44.20 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 215 SLIDGCCKNGDIERAKMLFRKIGELGLV--ATQHTYTVLICGLFKNGLQKDGFEFYEKMQLN 274 (574)
Q Consensus 215 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 274 (574)
.....+...|++++|.+.|+++....+. --....-.++.++.+.|++++|...+++.++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444556677777777777777665322 11334455666777777777777777776654
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.25 Score=43.93 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLD 134 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 134 (574)
..|+.=+..+.+-..+++|..-++...+
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~ 97 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGN 97 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhcc
Confidence 4566667777777777777665555543
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.91 E-value=0.016 Score=53.19 Aligned_cols=25 Identities=12% Similarity=-0.108 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 043999 178 FGILIKGCCEAGDLNKAFEVLNQLE 202 (574)
Q Consensus 178 ~~~li~~~~~~g~~~~A~~~~~~m~ 202 (574)
+..+...|...|++++|...|+.+.
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.31 Score=43.31 Aligned_cols=143 Identities=14% Similarity=0.049 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----H
Q 043999 388 YNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVL-----I 462 (574)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----i 462 (574)
-+.++..+...|.+.-...++++.++...+.++.....|...-.+.|+.+.|...|++..+..-..|..+.+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 44566666667777777788888887766667777777777778888888888888876654223333333333 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 463 HGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIG 533 (574)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 533 (574)
..|.-.+++-+|...+++....+.. |+...|.-.-+..-.|+...|++.++.|++. .|...+-++++-
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLF 327 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHH
Confidence 3455567778888888887776433 5555555444555568888888888888874 555555544443
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.82 E-value=0.28 Score=47.02 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=60.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043999 180 ILIKGCCEAGDLNKAFEVLNQLEEMG---FSPNVVIYTSLIDGCCK---NGDIERAKMLFRKIGELGLVATQHTYTVLIC 253 (574)
Q Consensus 180 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 253 (574)
.++-.|....+++..+++.+.+.... +.-....-....-++-+ .|+.++|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445777888888888888887641 11122222334445556 7888899988888666656677888887776
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHC
Q 043999 254 GLFK---------NGLQKDGFEFYEKMQLN 274 (574)
Q Consensus 254 ~~~~---------~g~~~~a~~~~~~~~~~ 274 (574)
.|-. ....++|++.|.+.-+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 6643 12355666666665543
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.82 E-value=0.043 Score=45.67 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHHH
Q 043999 492 VYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQML-----KLGLKPSVSLYN 564 (574)
Q Consensus 492 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 564 (574)
+...++..+...|++++|.++.+.+.... +-|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45667777888999999999999998862 4467889999999999999999999998875 359999887643
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.81 E-value=0.01 Score=42.44 Aligned_cols=55 Identities=24% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 499 GYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 499 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
.|.+.+++++|.++++.+.+.+ +.+...|.....++.+.|++++|...+++.++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555531 223344445555555555555555555555543
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.80 E-value=0.35 Score=48.60 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 386 VTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQK 448 (574)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 448 (574)
.+...+..-+-+...+.-|.++|.+|-+. ..+++.....+++++|..+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 33333334444455556666666655322 3445556666777777766665544
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.80 E-value=0.2 Score=50.18 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCh--hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 179 GILIKGCCEAGDL--NKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKI 236 (574)
Q Consensus 179 ~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 236 (574)
+..-++|.+-.+. -+.+.-++++.+.|-.|+... +...++-.|++.+|-++|.+-
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 3333444444333 334445667777887777654 455667778888888888653
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.79 E-value=0.039 Score=45.89 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=67.4
Q ss_pred hHHHHHHH---HHHhcCChHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHH
Q 043999 107 RLYESIID---AHLKSRLSDQALFYFHQMLDS--G-VRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGI 180 (574)
Q Consensus 107 ~~~~~li~---~~~~~g~~~~A~~~~~~~~~~--g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 180 (574)
..|..++. .....|+.+.+.+.++++... | +-|+... ..-.......++.. -..+...
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~------~~~~~~~ 67 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL------YLDALER 67 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH------HHHHHHH
Confidence 34555533 335678888898888888753 2 2222111 00011111122221 1234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCChhhH
Q 043999 181 LIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIG-----ELGLVATQHTY 248 (574)
Q Consensus 181 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 248 (574)
++..+...|++++|.+..+.+.... +-+...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 6667777788888888877777653 2366677778888888888888887777653 34777766543
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.66 E-value=0.013 Score=41.90 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=36.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 463 HGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
..|.+.+++++|.++++.++..++. +...|......+.+.|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456666777777777776665433 5555666666677777777777777777663
No 218
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=1.2 Score=46.60 Aligned_cols=179 Identities=16% Similarity=0.132 Sum_probs=122.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPR--SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCC 186 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 186 (574)
..+-+..+++...++-|+.+...- +..++ ........+-+.+.|++++|...|-+......|. .+|.-|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHHHhc
Confidence 456778888899999998876543 22222 1223334455678999999998887766554443 3556677
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043999 187 EAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFE 266 (574)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 266 (574)
...++..-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|..
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 888888888999999999876 66777889999999999999888776654 2211 1124455666677777777766
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 267 FYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMR 307 (574)
Q Consensus 267 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 307 (574)
+-.+... .......++ -..+++++|++.+..+.
T Consensus 485 LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 6554432 233334443 34688999998887763
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.58 E-value=0.0072 Score=43.90 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 492 VYNMMIFGYCKEGNSYRALRLLGEMNEK--GLV---PN-IASYSSTIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 492 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
+|+.+...|...|++++|++.+++..+. ... |+ ..++..+..++...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554432 011 11 2344555555556666666666655554
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.52 E-value=0.0087 Score=43.47 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 456 YTYGVLIHGLCMKGNMKEASKLFNSMWET----KLE-PN-DVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 456 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
.+++.+...|...|++++|++.|++.++. |.. |+ ..+++.+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777777788888888777776643 111 22 45677777888888888888888877654
No 221
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.51 E-value=0.77 Score=43.43 Aligned_cols=251 Identities=16% Similarity=0.121 Sum_probs=169.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCCh
Q 043999 116 HLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIF----VIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDL 191 (574)
Q Consensus 116 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 191 (574)
-.-.|+++.|.+-|+.|+. |+.+-..=+.+ -.+.|..+.|+..-++.-..-+.-...+...+...|..|++
T Consensus 130 al~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCCh
Confidence 3457999999999999986 33443222222 34778999999888887766666678899999999999999
Q ss_pred hHHHHHHHHHHHCC-CCCCHHh--HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHH
Q 043999 192 NKAFEVLNQLEEMG-FSPNVVI--YTSLIDGCC---KNGDIERAKMLFRKIGELGLVATQH-TYTVLICGLFKNGLQKDG 264 (574)
Q Consensus 192 ~~A~~~~~~m~~~g-~~p~~~~--~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a 264 (574)
+.|+++++.-.+.. +.+++.- -..|+.+-. -.-+...|...-.+..+ +.||.. .-..-...+.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 99999999876543 3444432 222332221 12345556655555544 334433 233445788999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH--H--HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 265 FEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEG--F--KLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQ 340 (574)
Q Consensus 265 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A--~--~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 340 (574)
-.+++.+-+....|+.. .+..+.+.|+.... . +-++.|+.+ +..+--.+..+-...|++..|..--+.
T Consensus 283 ~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 283 SKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred hhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999885555532 22334455553221 1 123334333 666777778888889999988887777
Q ss_pred HHHCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC
Q 043999 341 MKMAGISPNVITYNKLIDGFCDA-GETDKAFRLFNQLKSNGQSP 383 (574)
Q Consensus 341 m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~g~~~ 383 (574)
.... .|....|..|.+.-... |+-.++...+.+..+.-..|
T Consensus 355 a~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 355 AARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred Hhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 7664 67788888777765544 99999999999988764444
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=96.47 E-value=0.11 Score=42.95 Aligned_cols=87 Identities=10% Similarity=-0.011 Sum_probs=58.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 430 FVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRA 509 (574)
Q Consensus 430 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 509 (574)
+...|++++|..+|..+...+ +.+..-+..|..++-..+++++|+..|......+.. |+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 456777777777777776654 344555666677777777777777777766554332 444455566777777777777
Q ss_pred HHHHHHHHH
Q 043999 510 LRLLGEMNE 518 (574)
Q Consensus 510 ~~~~~~m~~ 518 (574)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777777776
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=1.4 Score=45.50 Aligned_cols=102 Identities=7% Similarity=0.062 Sum_probs=60.8
Q ss_pred hCCCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHCCC
Q 043999 134 DSGVRPRSNTFNS-----LLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDL--NKAFEVLNQLEEMGF 206 (574)
Q Consensus 134 ~~g~~p~~~~~~~-----ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~ 206 (574)
.-|++.+..-|.. +++-+...+.+..|+++-..+......+...|.....-+.+..+. +++.+..++=...-.
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 3455555444443 467777888888888888777654222256666666777665432 223332222222112
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 207 SPNVVIYTSLIDGCCKNGDIERAKMLFRKI 236 (574)
Q Consensus 207 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 236 (574)
....+|..+..-....|+.+-|..+++.=
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E 533 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELE 533 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 24456777777777888888888877643
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=96.35 E-value=0.41 Score=39.76 Aligned_cols=90 Identities=13% Similarity=0.019 Sum_probs=60.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 043999 392 IRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNM 471 (574)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 471 (574)
..-+...|++++|..+|+-+...+.- +..-|..|..++-..+++++|...|......+ ..|+..+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 33455677888888777777655432 44456666666777777888888777665543 34444455566777778888
Q ss_pred HHHHHHHHHHHh
Q 043999 472 KEASKLFNSMWE 483 (574)
Q Consensus 472 ~~A~~~~~~~~~ 483 (574)
++|...|...++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888777766
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.19 E-value=0.82 Score=46.28 Aligned_cols=116 Identities=18% Similarity=0.073 Sum_probs=66.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHcccC----CCCCHHHHHHHHHHHHhcCChhH
Q 043999 119 SRLSDQALFYFHQMLDSGVRPRSNTFNSL-LIFVIKSCSFDKGWLFFSENRCK----VELDVYSFGILIKGCCEAGDLNK 193 (574)
Q Consensus 119 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~ 193 (574)
....+.|.++++.+.+. -|+...|... ...+...|++++|++.|++.... .+.....+--+.-.+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888875 4666555443 34566778888888888865431 12223334444555666677777
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHH-HHHHhcCCH-------HHHHHHHHHHH
Q 043999 194 AFEVLNQLEEMGFSPNVVIYTSLI-DGCCKNGDI-------ERAKMLFRKIG 237 (574)
Q Consensus 194 A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~~~ 237 (574)
|.+.|.++.+.+- .+..+|.-+. .++...|+. ++|.++|.+..
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7777777766431 1222333222 223345555 55666665543
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.18 E-value=1.3 Score=42.61 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=18.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 419 SEVTYTILIDSFVRSDDMEKAFEMYSLMQKS 449 (574)
Q Consensus 419 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 449 (574)
+...+.+++.+..-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444555556666666666666666666554
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.05 E-value=0.066 Score=51.95 Aligned_cols=99 Identities=20% Similarity=0.105 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043999 452 SPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPND----VVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIAS 527 (574)
Q Consensus 452 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 527 (574)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++.++.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 455778999999999999999999999999986 4553 469999999999999999999999999852 22 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 043999 528 YSSTIG--VLCQDGKWPEAEVLLNQMLKLGL 556 (574)
Q Consensus 528 ~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~ 556 (574)
|..+.. .+....+.++..++++.+.+-|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 322111 11222344577788888887664
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.97 E-value=0.11 Score=50.40 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=57.4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 418 PSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDV----YTYGVLIHGLCMKGNMKEASKLFNSMWET 484 (574)
Q Consensus 418 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 484 (574)
.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|++.++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999886 4553 35899999999999999999999999874
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.94 E-value=0.16 Score=40.66 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 454 DVYTYGVLIHGLCMKGNMKEASKLFNSMWET---------------KLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 454 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
|..++..++.++++.|+++....+++..-.- ...|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888999999999999999988875321 2346677777777777777778888777777765
Q ss_pred C-CCCCCHHHHHHHHHHHH
Q 043999 519 K-GLVPNIASYSSTIGVLC 536 (574)
Q Consensus 519 ~-g~~p~~~~~~~l~~~~~ 536 (574)
. +++-+..+|..|+.-+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 4 45556677777775443
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.90 E-value=0.15 Score=40.70 Aligned_cols=85 Identities=13% Similarity=0.091 Sum_probs=67.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 419 SEVTYTILIDSFVRSDDMEKAFEMYSLMQK---------------SGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWE 483 (574)
Q Consensus 419 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 483 (574)
|..++..++.++++.|+++....+.+..=. ....|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 457888999999999999999988877521 12457888999999999999999999999999876
Q ss_pred C-CCCCCHHHHHHHHHHHHhc
Q 043999 484 T-KLEPNDVVYNMMIFGYCKE 503 (574)
Q Consensus 484 ~-~~~p~~~~~~~li~~~~~~ 503 (574)
. +++-+..+|..|+.-....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 5 6666788888888654443
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.7 Score=40.77 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 043999 318 YNTLICGLCKEMRVQEAERLLDQMKMAG---ISPNVITYNKLIDGFCDAGETDKAFRLF 373 (574)
Q Consensus 318 ~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 373 (574)
|-..|-.+.-..++..|.+.++.-.+.+ -+-+..+...|+.+| ..|+.+++.++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3344444555667777777777644332 123445566666665 356666655544
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.86 E-value=2.4 Score=42.98 Aligned_cols=175 Identities=18% Similarity=0.124 Sum_probs=98.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCC-CCCH------HHHHHHHHHHHh----cCChhHH
Q 043999 126 LFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKV-ELDV------YSFGILIKGCCE----AGDLNKA 194 (574)
Q Consensus 126 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~------~~~~~li~~~~~----~g~~~~A 194 (574)
.-+|.-++.. +|| ....++..+.-.|+-+.+++.+.+..... -..+ -.|...+..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555443 333 34456666666677777777776654431 0111 224444444443 3466778
Q ss_pred HHHHHHHHHCCCCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC--C-CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 195 FEVLNQLEEMGFSPNVVIYTSL-IDGCCKNGDIERAKMLFRKIGELG--L-VATQHTYTVLICGLFKNGLQKDGFEFYEK 270 (574)
Q Consensus 195 ~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 270 (574)
.++++.+.+. -|+...|... ...+...|++++|++.|++..... . +.....+--+.-.+.-.+++++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8888887764 4565554433 345556788888888887654311 1 11233444455667777888888888888
Q ss_pred HHHCCCCCCHhhHHHH-HHHHHhcCCH-------HHHHHHHHHHH
Q 043999 271 MQLNGVSPSLYTYNCL-IHEYCNEGKV-------SEGFKLFDEMR 307 (574)
Q Consensus 271 ~~~~g~~p~~~~~~~l-i~~~~~~g~~-------~~A~~~~~~m~ 307 (574)
+.+..- -...+|.-+ ..++...|+. ++|.++|.++.
T Consensus 331 L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 331 LLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 876531 122333322 2334456666 77777777663
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.86 E-value=0.13 Score=40.19 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=67.5
Q ss_pred HHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---hHHHHHHHHHhcCC
Q 043999 149 IFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVV---IYTSLIDGCCKNGD 225 (574)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~ 225 (574)
.+++..|+.+.|++.|.+.....|.....||.-..++--.|+.++|++=+++..+..-..... .|..-...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 356678888888888888887777888889988888888899999988888877642111222 33334455667788
Q ss_pred HHHHHHHHHHHHhCC
Q 043999 226 IERAKMLFRKIGELG 240 (574)
Q Consensus 226 ~~~A~~~~~~~~~~~ 240 (574)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888887776665
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.14 Score=48.65 Aligned_cols=91 Identities=8% Similarity=-0.069 Sum_probs=50.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHH
Q 043999 113 IDAHLKSRLSDQALFYFHQMLDS-----GVRP---------RSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSF 178 (574)
Q Consensus 113 i~~~~~~g~~~~A~~~~~~~~~~-----g~~p---------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (574)
.+.|.+.|++..|...|++.+.. +.++ -..+++.+.-++.|.+.+.+|++..+..+...++|+-+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 45788999999999999886542 1111 011223333444555555555555555555445555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 179 GILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 179 ~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
..-..++...|+++.|+..|+++.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5555555555555555555555554
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.84 E-value=1.3 Score=39.72 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=24.4
Q ss_pred HhcCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043999 186 CEAGDLNKAFEVLNQLEEMGF--SPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELG 240 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 240 (574)
.+.|++++|.+.|+.+....+ +-...+.-.++-++.+.+++++|+...++.....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 344555555555555543211 0112233334444445555555555555544443
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.78 E-value=0.25 Score=49.14 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHh
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCE 187 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 187 (574)
-.+.+++.+-+.|.++.|+++.. |+.+ -.....+.|+++.|.+..++.. +...|..|.+...+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~A~~~a~~~~-----~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDIALEIAKELD-----DPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHHHCCCCS-----THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHHHHHHHHhcC-----cHHHHHHHHHHHHH
Confidence 35555555566666666655422 2111 1222335555555555443332 44556666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043999 188 AGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEF 267 (574)
Q Consensus 188 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 267 (574)
.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+....+| -++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHH
Confidence 6666666665554432 4445555555555555555554444433 133444444444555555444
Q ss_pred HH
Q 043999 268 YE 269 (574)
Q Consensus 268 ~~ 269 (574)
+.
T Consensus 425 L~ 426 (443)
T PF04053_consen 425 LI 426 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.76 E-value=0.77 Score=37.73 Aligned_cols=126 Identities=16% Similarity=0.183 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhc
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEA 188 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 188 (574)
-..+|..+.+.+.+.....+++.+...+ +.+....+.++..|++.+ ..+....+.. ..+.+....+++.|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-----~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-----KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-----ccccCCHHHHHHHHHHc
Confidence 4567777777888899999999888776 356777888888887653 3344444442 12333344466666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 043999 189 GDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKN-GDIERAKMLFRKIGELGLVATQHTYTVLICGLF 256 (574)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 256 (574)
+-++++.-++.++.. +...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666665532 22233333333 6666666665541 14445555555443
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.19 Score=47.72 Aligned_cols=140 Identities=15% Similarity=-0.017 Sum_probs=89.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043999 390 VLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKG 469 (574)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 469 (574)
.-.+.|.+.|++..|...|++.... +. +...-+.++..... ..-..++..+..+|.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhh
Confidence 3456677778888777777775532 00 01111111111111 122345667778888999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCC-HHHHHHH
Q 043999 470 NMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLC-QDGK-WPEAEVL 547 (574)
Q Consensus 470 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~-~~~A~~~ 547 (574)
++.+|++.-++.+..+. +|....--=..+|...|+++.|+..|+++++ +.|+...-..=+..|. +... .+...++
T Consensus 272 ~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888653 3777777778888889999999999999988 5676655444444443 3333 3344778
Q ss_pred HHHHHH
Q 043999 548 LNQMLK 553 (574)
Q Consensus 548 ~~~m~~ 553 (574)
|..|..
T Consensus 349 y~~mF~ 354 (397)
T KOG0543|consen 349 YANMFA 354 (397)
T ss_pred HHHHhh
Confidence 888874
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.73 E-value=0.26 Score=38.71 Aligned_cols=91 Identities=19% Similarity=0.114 Sum_probs=51.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCC
Q 043999 464 GLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNI---ASYSSTIGVLCQDGK 540 (574)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~ 540 (574)
++...|+++.|++.|.+.+..-++ ....||.-..++.-+|+.++|++=+++.++..-.-.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566666666666666654222 5566666666666666666666666666653111111 122233345555666
Q ss_pred HHHHHHHHHHHHHcC
Q 043999 541 WPEAEVLLNQMLKLG 555 (574)
Q Consensus 541 ~~~A~~~~~~m~~~g 555 (574)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655544
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.71 E-value=1.1 Score=43.95 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 459 GVLIHGLCMKGNMKEASKLFNSMWETKLE-PNDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 459 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
..+..++-+.|+.++|++.++++.+.... -+......|+.++...+.+.++..++.+--+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555556666666666666666543211 1233455566666666666666666666543
No 241
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=3.5 Score=42.72 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=83.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043999 419 SEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIF 498 (574)
Q Consensus 419 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 498 (574)
...+.+--+..+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-+++-+... .+.-|.....
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 33445556666778888889988877665 6888888888899999999988777655542 2556778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 499 GYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLN 549 (574)
Q Consensus 499 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 549 (574)
+|.+.|+.++|.+++-+... . .-...+|.+.|++.+|.+..-
T Consensus 753 ~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHH
Confidence 99999999999998865432 1 146677888888888876643
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.27 Score=44.28 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 043999 457 TYGVLIHGLCMKGNMKEASKLFNSMWETKLE--PNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVP---NIASYSST 531 (574)
Q Consensus 457 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l 531 (574)
.|+.-+. +.+.|++.+|..-|...++..+. -....+-.|+.++...|++++|..+|..+.+. .+. -+..+.-+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCCCCChHHHHHH
Confidence 3444443 34556677777777776665221 12334555667777777777777777776654 111 12445556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 043999 532 IGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 532 ~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
.....+.|+.++|...|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66666677777777777777654
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.54 E-value=2.1 Score=40.03 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 283 YNCLIHEYCNEGKV---SEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMA 344 (574)
Q Consensus 283 ~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 344 (574)
+..++.+|...+.. ++|.++++.+.+.... .+..+-.-+..+.+.++.+++.+.+.+|...
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34455555555543 3344444444333222 2334444444454556666666666666554
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=1.8 Score=39.69 Aligned_cols=118 Identities=13% Similarity=0.029 Sum_probs=51.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCC-HHHHHHHHHHHHhcCChhHH
Q 043999 116 HLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELD-VYSFGILIKGCCEAGDLNKA 194 (574)
Q Consensus 116 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 194 (574)
....|++.+|...|...+... +-+....-.+..+|...|+++.|..++..+......+ ......-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344555555555555555432 1123333444555555555555555555554431111 11112223333333333333
Q ss_pred HHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 195 FEVLNQLEEMGFSP-NVVIYTSLIDGCCKNGDIERAKMLFRKIG 237 (574)
Q Consensus 195 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 237 (574)
..+-.+.-.. | |...-..+...+...|+.++|.+.+-.+.
T Consensus 223 ~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333321 2 33444444555555555555554444443
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.34 E-value=0.8 Score=45.68 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043999 387 TYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLC 466 (574)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 466 (574)
..+.++.-+-+.|.++.|+.+...-.. -.+...+.|+++.|.++.+. .++...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 355566666666666666655433211 12233456666666654322 335556667777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 467 MKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEV 546 (574)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 546 (574)
+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....| + ++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~---~---~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG---D---INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc---C---HHHHHHHHHHcCCHHHHHH
Confidence 77777777776665532 4555555666666666666666655554 1 2333334444455555555
Q ss_pred HHHH
Q 043999 547 LLNQ 550 (574)
Q Consensus 547 ~~~~ 550 (574)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 246
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.32 E-value=4.1 Score=44.60 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=52.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhc
Q 043999 321 LICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVT--YNVLIRAFSKA 398 (574)
Q Consensus 321 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~ 398 (574)
...-+.+..++++|--.|+..-+. .--+.+|..+|++.+|..+..++... .|... -..|+.-+...
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 333344455666665555543221 12345566666776666666555321 12221 24556666677
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 043999 399 GNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMY 443 (574)
Q Consensus 399 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 443 (574)
+++-+|-++..+.... ..-.+..+|+...+++|..+-
T Consensus 1013 ~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred ccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHH
Confidence 7777776666655432 122233345555555555544
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.30 E-value=2 Score=38.38 Aligned_cols=198 Identities=17% Similarity=0.111 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH-HH
Q 043999 353 YNKLIDGFCDAGETDKAFRLFNQLKSN-GQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILID-SF 430 (574)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~ 430 (574)
+......+...+++..+...+...... ........+......+...++...+...+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 333344444444444444444443321 112223333333344444444444444444444332221 111111111 34
Q ss_pred HhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043999 431 VRSDDMEKAFEMYSLMQKSGF--SPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYR 508 (574)
Q Consensus 431 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 508 (574)
...|+++.|...+........ ......+......+...++.+++...+.+............+..+...+...++++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 455555555555555433110 011222222223344455555555555555543111023445555555555555555
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 509 ALRLLGEMNEKGLVPN-IASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 509 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
|...+...... .|+ ...+......+...|..+++...+++...
T Consensus 221 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 221 ALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555553 222 22333333333344555555555555553
No 248
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.29 E-value=1.1 Score=35.38 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=25.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 286 LIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAG 345 (574)
Q Consensus 286 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 345 (574)
.++.+.+.|+-+.-.+++.++.+ +-.+++...-.+..+|.+.|+..++..++.++-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444445555555555554443 222344444444555555555555555555554444
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=95.28 E-value=1.3 Score=43.49 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=82.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043999 120 RLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLN 199 (574)
Q Consensus 120 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 199 (574)
....+|.++.++.++.+ +-|..+...+..++.-.|+++.|..+|++.....|....+|......+.-+|+.++|.+.++
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45567888888888876 44788877777777888889999999999888777777888888777888899999999999
Q ss_pred HHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 200 QLEEMGFSPN---VVIYTSLIDGCCKNGDIERAKMLFRKI 236 (574)
Q Consensus 200 ~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~ 236 (574)
+..+.. |. .......++.|+.. .+++|+++|-+-
T Consensus 397 ~alrLs--P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 397 KSLQLE--PRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHhccC--chhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 876643 33 22333344455543 467777766543
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.57 Score=43.28 Aligned_cols=162 Identities=11% Similarity=0.046 Sum_probs=115.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH----HHHHHHHHhcCCH
Q 043999 361 CDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTY----TILIDSFVRSDDM 436 (574)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~ 436 (574)
-..|+..+|...++++.+. .+.|...++--=.+|.-.|+.+.-...+++.... ..||...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467888888888888876 5668888888888999999999999999888754 23344333 2333455688999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043999 437 EKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLE---PNDVVYNMMIFGYCKEGNSYRALRLL 513 (574)
Q Consensus 437 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~ 513 (574)
++|.+.-++..+.+ +.|.....+..+.+-..|+.+++.++..+-...--. .-...|....-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999888776 667777788888888999999999988765432101 11223444455566778999999999
Q ss_pred HHH-HHCCCCCCH
Q 043999 514 GEM-NEKGLVPNI 525 (574)
Q Consensus 514 ~~m-~~~g~~p~~ 525 (574)
+.= ..+--+.|.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 864 443233344
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.23 E-value=0.81 Score=37.08 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=32.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043999 185 CCEAGDLNKAFEVLNQLEEMGF--SPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGL 255 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 255 (574)
..+.|++++|.+.|+.+...-. +-...+.-.|+.+|.+.+++++|...+++.++.++.....-|...+.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3444555555555555544310 0012233445555555555555555555555544433333444444443
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=1.5 Score=40.17 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=57.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 043999 184 GCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKD 263 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 263 (574)
.....|++.+|..+|+........ +...--.++.+|...|+++.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 344555666666666555543221 2344445555666666666666666555432211111111122233333333333
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 264 GFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR 309 (574)
Q Consensus 264 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 309 (574)
..++-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.++
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333333322 124445555666666666666666655554443
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.5 Score=43.62 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=100.0
Q ss_pred HHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH----HHHHHHHHhcCCH
Q 043999 151 VIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIY----TSLIDGCCKNGDI 226 (574)
Q Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~ 226 (574)
+...|.+.+|-..++++....|-|..+++..=++|.-.|+.+.-...++++... ..||...| ..+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346678888888888888888888888888888888888888888888887753 12333222 2333445578888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHH
Q 043999 227 ERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPS---LYTYNCLIHEYCNEGKVSEGFKLF 303 (574)
Q Consensus 227 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~ 303 (574)
++|++.-++..+.+.. |.-+-.++.+.+..+|+..++.++..+-...--..+ ..-|=-..-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8888888887776543 566666777778888888888887665432210000 011111222344456777777777
Q ss_pred HH
Q 043999 304 DE 305 (574)
Q Consensus 304 ~~ 305 (574)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 64
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.35 Score=43.59 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHcccC---CCCCHHHHHHH
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSN---TFNSLLIFVIKSCSFDKGWLFFSENRCK---VELDVYSFGIL 181 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l 181 (574)
.|+.-+..| +.|++..|...|...++.. +-+.+ ++--|..++...|++++|...|..+... .+--+.+.--|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 466666654 6677888888888877653 22222 2223556666666666666666665544 22233455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~ 204 (574)
.....+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 55666666666666666666553
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.93 E-value=0.75 Score=37.26 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=44.5
Q ss_pred HHhcCChhHHHHHHHHcccCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 043999 151 VIKSCSFDKGWLFFSENRCKVELD---VYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKN 223 (574)
Q Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 223 (574)
..+.|++++|.+.|+.+..+.|.. ..+.-.++.+|.+.+++++|...+++.++.......+-|...+.+++.-
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 345666666666666666653332 3345567777888888888888888877754332234455555555443
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.84 E-value=1.8 Score=35.44 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=53.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 043999 181 LIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGL 260 (574)
Q Consensus 181 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 260 (574)
++..+.+.+........++.+...+. .+....+.++..|++.+ .++..+.++. ..+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444455555555555544432 34445555555555432 2222222221 0122333344555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 261 QKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNE-GKVSEGFKLFDEMRHREVACNVVTYNTLICGLC 326 (574)
Q Consensus 261 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 326 (574)
++++.-++.++.. +...+..+... ++.+.|.+.+.+- . +...|..++..+.
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--~----~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--N----NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--C----CHHHHHHHHHHHH
Confidence 5555555544421 11122222222 5555555555541 1 4455555555544
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=6.3 Score=41.51 Aligned_cols=218 Identities=12% Similarity=0.071 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH----hCC----------C--CCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQML----DSG----------V--RPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK 170 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g----------~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 170 (574)
.+.+.++.+|...+++-.=.-+++... ..+ + ....-+...-|..+++...++-|+.+...-...
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d 363 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLD 363 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCC
Confidence 456777777777776543333333322 212 0 001122444677788888888888887665432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 043999 171 VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTV 250 (574)
Q Consensus 171 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 250 (574)
...-......-.+.+.+.|++++|...+-+-+.. ++|. .+|.-|....++.+-...++.+.+.|.. +...-..
T Consensus 364 ~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttl 436 (933)
T KOG2114|consen 364 EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTL 436 (933)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHH
Confidence 1111122333445566789999998888776543 2332 3556666677777778888888888876 6777788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043999 251 LICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMR 330 (574)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 330 (574)
|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+-+.+-.++|..+-..... +......+ +-..++
T Consensus 437 LLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~n 505 (933)
T KOG2114|consen 437 LLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHN 505 (933)
T ss_pred HHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcC
Confidence 9999999999888777666544 2221 11233455556666666666655444322 23333333 335678
Q ss_pred HHHHHHHHHHHH
Q 043999 331 VQEAERLLDQMK 342 (574)
Q Consensus 331 ~~~A~~~~~~m~ 342 (574)
+++|++.+..+.
T Consensus 506 y~eAl~yi~slp 517 (933)
T KOG2114|consen 506 YEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHhcCC
Confidence 889988887653
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.77 E-value=0.29 Score=43.97 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043999 314 NVVTYNTLICGLCK-----EMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTY 388 (574)
Q Consensus 314 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 388 (574)
|-.+|-+.+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+..-. |.. .+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~n-vf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQN-VF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cHH-HH
Confidence 66666666665543 345555566666677777777777777777665443221 111 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 043999 389 NVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDM 436 (574)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 436 (574)
....-.|- .+-+-+++++++|...|+.||..+-..+++++.+.+-.
T Consensus 129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11111111 12345788999999999999999999999998877653
No 259
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.72 E-value=0.31 Score=43.79 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043999 452 SPDVYTYGVLIHGLCM-----KGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCK 502 (574)
Q Consensus 452 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 502 (574)
+-|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+=+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 3455566666655543 34566666667777777777777777777776644
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=94.60 E-value=2.1 Score=42.05 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=104.2
Q ss_pred ChHHHHHHHHHHHH-CCCCCC-HhHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043999 400 NSKMASDLVREMEE-RGITPS-EVTYTILIDSFVR---------SDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMK 468 (574)
Q Consensus 400 ~~~~A~~~~~~m~~-~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 468 (574)
..+.|..+|.+... ....|+ ...|..+..++.. .....+|.+.-++..+.+ +.|......+...+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 45678889999882 223444 3445555444322 234567778888888877 77888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHH
Q 043999 469 GNMKEASKLFNSMWETKLEPN-DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNI---ASYSSTIGVLCQDGKWPEA 544 (574)
Q Consensus 469 g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A 544 (574)
++++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+ ..|.. ......++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 9999999999999885 454 56677777777889999999999999887 45543 3334445566664 46788
Q ss_pred HHHHHHHH
Q 043999 545 EVLLNQML 552 (574)
Q Consensus 545 ~~~~~~m~ 552 (574)
.+++-+-.
T Consensus 427 ~~~~~~~~ 434 (458)
T PRK11906 427 IKLYYKET 434 (458)
T ss_pred HHHHhhcc
Confidence 88775544
No 261
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.51 E-value=6.1 Score=39.96 Aligned_cols=407 Identities=14% Similarity=0.047 Sum_probs=221.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043999 140 RSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDG 219 (574)
Q Consensus 140 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 219 (574)
+...|..++.---...+.+.+..++..+....|.----|......-.+.|..+.+.++|++-.. |++-.+..|.....-
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 3344555553333333445666777777766565555677777777788999999999999885 466666677666655
Q ss_pred HH-hcCCHHHHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---hc
Q 043999 220 CC-KNGDIERAKMLFRKIGEL-GLV-ATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYC---NE 293 (574)
Q Consensus 220 ~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~---~~ 293 (574)
++ ..|+.+...+.|++.... |.. .+...|...|..-..++++.....++++.++. ...-++....-|. +.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhc
Confidence 44 467788888888887653 221 24557888888888888999999999998864 2233333332222 11
Q ss_pred ------CCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 043999 294 ------GKVSEGFKLFDEMRHR----EVACNVVTYNTLICGLCK-EMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCD 362 (574)
Q Consensus 294 ------g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 362 (574)
...+++.++-.....+ ...+....+..-+..-.. .+..+++.....+.. +.--.++-.
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~ 267 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQK 267 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHh
Confidence 1223332222222111 000011111111111000 111111111111110 001112222
Q ss_pred cCCHHHHHHHHHHHHHC---CC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 043999 363 AGETDKAFRLFNQLKSN---GQ----SPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDD 435 (574)
Q Consensus 363 ~g~~~~A~~~~~~~~~~---g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 435 (574)
.....+....|+.-++. .+ .++..+|...+.--.+.|+.+.+.-++++..-. +..=...|--.+.-....|+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCc
Confidence 23333333444443332 11 235678888888889999999999999887532 11122334444555555599
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---
Q 043999 436 MEKAFEMYSLMQKSGFSPDVYTYGVLIHG-LCMKGNMKEASKLFNSMWETKLEPNDV-VYNMMIFGYCKEGNSYRAL--- 510 (574)
Q Consensus 436 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~--- 510 (574)
.+-|..++....+.-++..+.+ ..+-.. .-..|+++.|..+++...+.- |+.. .-..-+....+.|+.+.+.
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i-~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~ 423 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPII-HLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKN 423 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHH-HHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHH
Confidence 9888888877665543333222 222222 334679999999999998753 5533 2223344556778888877
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHhh
Q 043999 511 RLLGEMNEKGLVPNIASYSSTIG-----VLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYRA 569 (574)
Q Consensus 511 ~~~~~m~~~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 569 (574)
+++....+. +-+......+.- .+.-.++.+.|..++.+|.+. +.++...|..++..
T Consensus 424 ~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 424 ELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRF 484 (577)
T ss_pred HHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHH
Confidence 333333322 112222222222 223358899999999999865 34445566665543
No 262
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.39 E-value=3.1 Score=36.15 Aligned_cols=63 Identities=17% Similarity=0.089 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 141 SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 141 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
+..||.+.--+...|+++.|.+.|+...+..|...++...-.-.+.--|++.-|.+-|...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 334555554455555555555555555444333333333333333334555555544444433
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.34 E-value=0.17 Score=31.64 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNS 146 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 146 (574)
+|..+...|.+.|++++|.++|++.++.. +-|...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 56777888888888888888888888763 224444443
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.33 E-value=4.6 Score=37.80 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043999 353 YNKLIDGFCDAGETD---KAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEER 414 (574)
Q Consensus 353 ~~~li~~~~~~g~~~---~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 414 (574)
...++.+|...+..+ +|.++++.+...... .+..+..-+..+.+.++.+++.+.+.+|+..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555544433 333344444332111 2333333344444455566666666666544
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.30 E-value=3.8 Score=36.81 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=26.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 392 IRAFSKAGNSKMASDLVREMEERGITPSE---VTYTILIDSFVRSDDMEKAFEMYSLM 446 (574)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~ 446 (574)
.+-|.+.|.+..|..-+++|++. .+-.. ..+-.+..+|...|-.++|.+.-.-+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34455666666666666666554 11111 22334445555555555555544433
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.28 E-value=0.12 Score=32.42 Aligned_cols=36 Identities=8% Similarity=-0.151 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHH
Q 043999 145 NSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGI 180 (574)
Q Consensus 145 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 180 (574)
..+...+...|++++|.++|+++....|.|...|..
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 334444444444444444444444444444444433
No 267
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.21 E-value=8.2 Score=40.23 Aligned_cols=178 Identities=17% Similarity=0.137 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHH----HH-HHhcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhc
Q 043999 191 LNKAFEVLNQLEEMGFSPNVVIYTSLI----DG-CCKNGDIERAKMLFRKIGE-------LGLVATQHTYTVLICGLFKN 258 (574)
Q Consensus 191 ~~~A~~~~~~m~~~g~~p~~~~~~~li----~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 258 (574)
...|.+.++...+.| +......+. .+ +....+.+.|+..|+...+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888877765 333322222 22 4456788889988888766 44 334566666666664
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 043999 259 G-----LQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCN-EGKVSEGFKLFDEMRHREVACNVVTYNTLICGLC----KE 328 (574)
Q Consensus 259 g-----~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~ 328 (574)
. +.+.|+.++.+..+.|. |+.......+..... ..+...|.++|....+.|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 55668888887777663 344433333322222 24567788888877777643 22222222221 23
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 329 MRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNG 380 (574)
Q Consensus 329 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 380 (574)
.+.+.|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 45677777777777776 2222222222233333 56666665555555544
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.20 E-value=3.9 Score=36.46 Aligned_cols=201 Identities=18% Similarity=0.066 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 043999 316 VTYNTLICGLCKEMRVQEAERLLDQMKMA-GISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIR- 393 (574)
Q Consensus 316 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~- 393 (574)
..+......+...+....+...+...... ........+......+...++...+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444445555555555555555554431 112333444444455555555556666665555432222 111111222
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 043999 394 AFSKAGNSKMASDLVREMEERGI--TPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSP-DVYTYGVLIHGLCMKGN 470 (574)
Q Consensus 394 ~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 470 (574)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 45666666666666666644211 0122233333333556677777777777776653 22 35666677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 471 MKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 471 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
+++|...+......... ....+..+...+...|..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888887777764221 2344444555555666778888777777764
No 269
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.86 E-value=10 Score=40.06 Aligned_cols=86 Identities=7% Similarity=0.109 Sum_probs=32.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHh---c
Q 043999 288 HEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAG-ISPNVITYNKLIDGFCD---A 363 (574)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~---~ 363 (574)
..+.-.|.++.|.+.+-. ..+...|.+++...+..|.-.+-.+... ..+.... -.|....+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 344456777777777665 1222234444444443332211111111 2222111 01111456666666665 3
Q ss_pred CCHHHHHHHHHHHHH
Q 043999 364 GETDKAFRLFNQLKS 378 (574)
Q Consensus 364 g~~~~A~~~~~~~~~ 378 (574)
.++.+|.+++--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 466666666655544
No 270
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.73 E-value=3.6 Score=34.42 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=51.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH--HHHHHHHHhcCCHH
Q 043999 432 RSDDMEKAFEMYSLMQKSGFSPDVYT-YGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDV-VY--NMMIFGYCKEGNSY 507 (574)
Q Consensus 432 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~--~~li~~~~~~g~~~ 507 (574)
+.+..++|+.-|..+.+.|...-+.. ..-........|+...|...|+++-.....|... -. ---...+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34445555555555554443221111 1111222344555555555555554432222211 00 11112234455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 508 RALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 508 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
....-.+-+...+-+.....-..|.-+-.+.|++.+|.++|+.+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555554444333222223334444455555666666666655553
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.73 E-value=7.9 Score=38.39 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 284 NCLIHEYCNEGKVSEGFKLFDEMRHREVA-CNVVTYNTLICGLCKEMRVQEAERLLDQMKMA 344 (574)
Q Consensus 284 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 344 (574)
..+..+.-+.|+.++|++.|++|.+..+. ........|+.++...+.+.++..++.+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34555555667777777777777654322 13345566777777777777777777665443
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.63 E-value=3.7 Score=34.31 Aligned_cols=133 Identities=14% Similarity=0.063 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHcccC-CCCCHH-H--HHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRS-NTFNSLLIFVIKSCSFDKGWLFFSENRCK-VELDVY-S--FGI 180 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~--~~~ 180 (574)
...|..-++. .+.|..++|+.-|..+.+.|...-+ .............|+..+|...|.++-.. ..|-+. - --.
T Consensus 59 gd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3445555543 4778899999999999887654211 12222334567788888888888887655 222222 1 111
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 181 LIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGEL 239 (574)
Q Consensus 181 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 239 (574)
-.-.+...|.++......+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 12234567778777777776665443334445556666667788888888888777653
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=5 Score=35.66 Aligned_cols=208 Identities=13% Similarity=0.101 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
...|..-..+|....++++|...+.+..+. ...|...|. ....++.|.-+.+++... +.-+..|+--...|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl-sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL-SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 355777778888888999988877776632 122222222 223344555555554432 22344566667788
Q ss_pred HhcCChhHHHHHHHHHHHC--CCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043999 186 CEAGDLNKAFEVLNQLEEM--GFSPNV--VIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQ 261 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~--g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 261 (574)
..+|..+.|-..+++.-+. ++.|+. ..|..-+...-..++...|.++ +....+.+.+..++
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHh
Confidence 8999988888887775541 233332 1233233333333333333333 33344566677777
Q ss_pred HHHHHHHHHHHHC----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 043999 262 KDGFEFYEKMQLN----GVSPSL-YTYNCLIHEYCNEGKVSEGFKLFDEMRHR---EVACNVVTYNTLICGLCKEMRVQE 333 (574)
Q Consensus 262 ~~a~~~~~~~~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~ 333 (574)
++|-..+.+-... .--++. ..|...|-.|.-..++..|.+.++.--+. .-.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 7766555443211 001122 23455555666677899999998874333 2222567777788877 4677777
Q ss_pred HHHHH
Q 043999 334 AERLL 338 (574)
Q Consensus 334 A~~~~ 338 (574)
+.++.
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 66554
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.54 E-value=0.17 Score=30.00 Aligned_cols=26 Identities=15% Similarity=0.168 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQML 133 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~ 133 (574)
+|+.|.+.|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888888888888888854
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.50 E-value=1.8 Score=40.59 Aligned_cols=164 Identities=13% Similarity=0.089 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhH
Q 043999 213 YTSLIDGCCKNGDIERAKMLFRKIGEL-GLVA---TQHTYTVLICGLFKNGLQKDGFEFYEKMQLNG-----VSPSLYTY 283 (574)
Q Consensus 213 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-----~~p~~~~~ 283 (574)
|..+..++-+..++.+++.+-+.-... |..| .-....++..++...+.++++++.|+...+.. ......++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 444444444445555555444433221 1111 01223334555666666777777777665421 11123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCH-HHH-----HHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-
Q 043999 284 NCLIHEYCNEGKVSEGFKLFDEM----RHREVACNV-VTY-----NTLICGLCKEMRVQEAERLLDQMK----MAGISP- 348 (574)
Q Consensus 284 ~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~-~~~-----~~li~~~~~~~~~~~A~~~~~~m~----~~g~~~- 348 (574)
-.|-..|.+..++++|.-...+. ..-++. |. ..| ..|.-++...|+..+|.+.-++.. ..|-.+
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 67777777777777766444333 222322 22 112 223345666777777766666543 334211
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 349 NVITYNKLIDGFCDAGETDKAFRLFNQLK 377 (574)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 377 (574)
-......+.+.|...|+.+.|+.-|++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12233456677888888888887777654
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.20 E-value=1.2 Score=40.84 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 043999 455 VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE-----KGLVPNIASYS 529 (574)
Q Consensus 455 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 529 (574)
..++..++..+...|+++.+.+.+++.....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 445566666677777777777777777665433 666677777777777777777777766654 36666655554
Q ss_pred HHHHH
Q 043999 530 STIGV 534 (574)
Q Consensus 530 ~l~~~ 534 (574)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.13 E-value=1.2 Score=40.96 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=56.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 043999 420 EVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWE-----TKLEPNDVVYN 494 (574)
Q Consensus 420 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 494 (574)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456667777777888888888888877764 56677788888888888888888888877664 36777666655
Q ss_pred HHHHH
Q 043999 495 MMIFG 499 (574)
Q Consensus 495 ~li~~ 499 (574)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 54444
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.01 E-value=4 Score=38.44 Aligned_cols=128 Identities=14% Similarity=0.032 Sum_probs=56.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH--
Q 043999 391 LIRAFSKAGNSKMASDLVREMEERGI-----TPSEVTYTILIDSFVRSDDMEKAFEMYSLMQK----SGFSPDVYTYG-- 459 (574)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~-- 459 (574)
+..++...+.++++++.|+...+.-. .....++..|...|.+..++++|.-+..+..+ .++..-..-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44444455555666665555443211 11223455555556666666665554444322 22111111121
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 460 ---VLIHGLCMKGNMKEASKLFNSMWET----KLEP-NDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 460 ---~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
.+.-++-..|++-.|.+.-++..+. |-.| .......+.+.|...|+.+.|..-+++...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 1223344555555555555554321 2111 122233445555555555555555555443
No 279
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.95 E-value=3.9 Score=32.51 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043999 493 YNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGL 556 (574)
Q Consensus 493 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 556 (574)
.+..+..+...|+-+.-.++..++.+. -.+++.....+..+|.+.|+..++..++.++.++|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445555556555555555555432 244555555556666666666666666666665554
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.66 E-value=5.2 Score=33.24 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=52.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 431 VRSDDMEKAFEMYSLMQKSGFSPDVY-TYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRA 509 (574)
Q Consensus 431 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 509 (574)
.+.++.+++..++..+.-. .|... .-..-...+...|++.+|+.+|+++.+.. |....-..|+..|....+-..=
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHH
Confidence 4566777777777776654 23322 11222233567777777777777766542 2322233334333333333333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 510 LRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEA 544 (574)
Q Consensus 510 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 544 (574)
..+-+++.+.+-.|+.. .++..+....+...|
T Consensus 97 r~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 97 RRYADEVLESGADPDAR---ALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHHHhcCCChHHH---HHHHHHHHhccccch
Confidence 44445555543333322 344444444443333
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.44 E-value=0.34 Score=28.70 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 043999 493 YNMMIFGYCKEGNSYRALRLLGE 515 (574)
Q Consensus 493 ~~~li~~~~~~g~~~~A~~~~~~ 515 (574)
|+.|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.90 E-value=0.14 Score=29.88 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHH
Q 043999 172 ELDVYSFGILIKGCCEAGDLNKA 194 (574)
Q Consensus 172 ~~~~~~~~~li~~~~~~g~~~~A 194 (574)
|.|..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 44444444444444444444444
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.89 E-value=2.6 Score=36.19 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 043999 457 TYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN--DVVYNMMIFGYCKEGNSYRALRLLGEMNEK---GLVPNIASYSST 531 (574)
Q Consensus 457 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l 531 (574)
.+..+...|++.|+.++|.+.|.++.+....|. ...+-.+|......|++..+.....+.... |-.++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455666677777777777777777666533332 334556666666677777776666665432 111111111111
Q ss_pred HH--HHHhcCCHHHHHHHHHHHH
Q 043999 532 IG--VLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 532 ~~--~~~~~g~~~~A~~~~~~m~ 552 (574)
.. .+...|++.+|-+.|-+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 2234577777777766654
No 284
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.66 E-value=6.2 Score=39.88 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=44.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGF 265 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (574)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+-|.+... |..|+-.+...|+.+-..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34455555555544322 344455555555555555555555544322 334444444444444333
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 266 EFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDE 305 (574)
Q Consensus 266 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 305 (574)
.+-....+.|.. | .-.-+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHh
Confidence 333333333321 1 122233445555555555443
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.59 E-value=0.25 Score=28.81 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 043999 489 NDVVYNMMIFGYCKEGNSYRA 509 (574)
Q Consensus 489 ~~~~~~~li~~~~~~g~~~~A 509 (574)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344455555555555555444
No 286
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.50 E-value=2.8 Score=38.59 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 401 SKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLM 446 (574)
Q Consensus 401 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 446 (574)
+++++.++..=++.|+.||.++++.+++.+.+.+++.+|.++...|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4455555554455555555555555555555555555555444443
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.41 E-value=3.2 Score=35.66 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 177 SFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPN--VVIYTSLIDGCCKNGDIERAKMLFRKIG 237 (574)
Q Consensus 177 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 237 (574)
.+..++..|++.|+.+.|.+.+.++.+....+. ...+-.+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 466677777777777777777777766433332 3345566666666777777666666553
No 288
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.26 E-value=8.1 Score=32.54 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=22.1
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 043999 196 EVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKM 231 (574)
Q Consensus 196 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 231 (574)
+.++.+.+.+++|+...+..+++.+.+.|++....+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444455556666666677777777777766554433
No 289
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.12 E-value=22 Score=37.16 Aligned_cols=244 Identities=12% Similarity=0.077 Sum_probs=113.7
Q ss_pred hcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 043999 292 NEGKVSEGFKLFDEMRH-------REVACNVVTYNTLICGLCKEM-----RVQEAERLLDQMKMAGISPNVITYNKLIDG 359 (574)
Q Consensus 292 ~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~~-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 359 (574)
...+.+.|+..|+.+.+ .+ ++.....+..+|.+.. +.+.|..++....+.| .|+.... +...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~~ 334 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYL--LGVL 334 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHH--HHHH
Confidence 33445555555555444 33 2233444445554422 4556677776666665 2333222 2222
Q ss_pred HHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 043999 360 FCD---AGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFS----KAGNSKMASDLVREMEERGITPSEVTYTILIDSFVR 432 (574)
Q Consensus 360 ~~~---~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 432 (574)
+.. ..+...|.++|....+.|.. + .+-.+..+|. -..+...|..++++.-+.| .|...--...+..+..
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV 410 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc
Confidence 222 23456777777777666532 1 1111111111 2235566777777776665 2221111222222333
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H---HHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 043999 433 SDDMEKAFEMYSLMQKSGFSPDVYTYGVLIH-G---LCM----KGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKE- 503 (574)
Q Consensus 433 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~---~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~- 503 (574)
++.+.+.-.+..+...|.+ ...+-...+. . ... ..+.+.+...+......| +......+...|...
T Consensus 411 -~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~ 485 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGL 485 (552)
T ss_pred -ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecC
Confidence 5666666555555554422 1111111111 0 001 224555666666655433 455555555555432
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcC
Q 043999 504 ---GNSYRALRLLGEMNEKGLVPNIASYSSTIGVLC----QDGKWPEAEVLLNQMLKLG 555 (574)
Q Consensus 504 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g 555 (574)
.+++.|...+....+.+ ....| .+...+- ... +..|.+++++..+.+
T Consensus 486 g~~~d~~~a~~~y~~a~~~~---~~~~~-nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 486 GTGRDPEKAAAQYARASEQG---AQALF-NLGYMHEHGEGIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred CCCCChHHHHHHHHHHHHhh---hHHHh-hhhhHHhcCcCcch-hHHHHHHHHHHHhcC
Confidence 24677777777776654 22222 2222221 123 677888888777543
No 290
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.06 E-value=14 Score=34.82 Aligned_cols=126 Identities=16% Similarity=0.267 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC---
Q 043999 263 DGFEFYEKMQLNGVSPSLYTYNCLIHEYCN--EG----KVSEGFKLFDEMRHREV---ACNVVTYNTLICGLCKEMR--- 330 (574)
Q Consensus 263 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~--- 330 (574)
+.+++++.|.+.|++-+..+|.+..-.... .. ...+|..+|+.|++..+ .++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344566777777776666555443222222 11 24556677777766543 2233444444433 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHH
Q 043999 331 -VQEAERLLDQMKMAGISPNVI--TYNKLIDGFCDAGE--TDKAFRLFNQLKSNGQSPSVVTYNV 390 (574)
Q Consensus 331 -~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~~ 390 (574)
.+.++.+|+.+.+.|+..+.. ..+.++........ ...+.++++.+.+.|+++....|..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 244555666666655543322 22222222211111 2345555666666665555544443
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.00 E-value=8.6 Score=32.39 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=13.3
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043999 235 KIGELGLVATQHTYTVLICGLFKNGLQ 261 (574)
Q Consensus 235 ~~~~~~~~~~~~~~~~li~~~~~~g~~ 261 (574)
.+.+.++.|+...+..+++.+.+.|++
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 333444445555555555555555543
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.79 E-value=0.66 Score=26.81 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=8.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 043999 530 STIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 530 ~l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
.+..++...|++++|+..+++.+
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHH
Confidence 33334444444444444444443
No 293
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.52 E-value=5.1 Score=33.93 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 473 EASKLFNSMWETKLEPN-DVVYNMMIFGYCKEG-----------NSYRALRLLGEMNEKGLVPNIASYSSTIGVL 535 (574)
Q Consensus 473 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 535 (574)
+|+.-|++.+. +.|+ ..++..+..+|...+ .+++|.+.|++..+ ..|+..+|+.-+...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 33444444444 2343 355666666655433 24455555555555 467777777666554
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.50 E-value=9.2 Score=31.83 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=5.1
Q ss_pred CChHHHHHHHHHH
Q 043999 120 RLSDQALFYFHQM 132 (574)
Q Consensus 120 g~~~~A~~~~~~~ 132 (574)
++.+++..++..+
T Consensus 24 ~~~~D~e~lL~AL 36 (160)
T PF09613_consen 24 GDPDDAEALLDAL 36 (160)
T ss_pred CChHHHHHHHHHH
Confidence 3333333333333
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.10 E-value=2.5 Score=31.40 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 471 MKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 471 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
.=++.+-++.+...++.|++....+.+++|.+.+++..|.++|+-...+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3355555666666666777777777777777777777777777766643
No 296
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.03 E-value=0.0081 Score=49.85 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=51.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCCh
Q 043999 112 IIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDL 191 (574)
Q Consensus 112 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 191 (574)
+|..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... +-...+++.|.+.|.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~------yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN------YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS------S-CTHHHHHHHTTTSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc------cCHHHHHHHHHhcchH
Confidence 4566667778888888888887665455677777888888888777777766652221 2233455555566666
Q ss_pred hHHHHHHHH
Q 043999 192 NKAFEVLNQ 200 (574)
Q Consensus 192 ~~A~~~~~~ 200 (574)
++|.-++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 666555544
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.02 E-value=28 Score=36.68 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=14.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 043999 286 LIHEYCNEGKVSEGFKLFDEMR 307 (574)
Q Consensus 286 li~~~~~~g~~~~A~~~~~~m~ 307 (574)
|+..|...+++..|.+++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 6666666677777766665544
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.95 E-value=1.1 Score=25.89 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043999 491 VVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN 524 (574)
Q Consensus 491 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 524 (574)
.+|..++..|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 5788999999999999999999999998 4554
No 299
>PRK09687 putative lyase; Provisional
Probab=89.79 E-value=17 Score=33.92 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 453 PDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 453 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
++..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|...+.++.+
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344444444555555554 23443333333321 1 122344444444442 34444444444
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.76 E-value=20 Score=34.71 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 383 PSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITP---SEVTYTILIDSFVRSDDMEKAFEMYSLMQK 448 (574)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 448 (574)
....+|..+...+.+.|.++.|...+.++...+... ++.....-.......|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677788888888888888888888887653221 233444445566777888888888877776
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.72 E-value=0.91 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 043999 531 TIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 531 l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
+...+.+.|++++|++.+++.+
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444444444444443
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.66 E-value=1.1 Score=25.81 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043999 491 VVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN 524 (574)
Q Consensus 491 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 524 (574)
..|..+...+...|++++|++.+++..+ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 4677889999999999999999999988 3454
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.49 E-value=7 Score=29.46 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 473 EASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 473 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
+..+-++.+...++.|++.+..+.+.+|.+..++..|+++|+-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444555555566666666666666666666666555543
No 304
>PRK09687 putative lyase; Provisional
Probab=89.48 E-value=18 Score=33.77 Aligned_cols=233 Identities=16% Similarity=0.080 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHH
Q 043999 314 NVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGET----DKAFRLFNQLKSNGQSPSVVTYN 389 (574)
Q Consensus 314 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~g~~~~~~~~~ 389 (574)
|.......+..+...|.. ++...+..+... +|...-...+.++...|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 444444444455444432 222333333322 2444444445555555542 3556666555333 34555555
Q ss_pred HHHHHHHhcCCh-----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043999 390 VLIRAFSKAGNS-----KMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHG 464 (574)
Q Consensus 390 ~li~~~~~~g~~-----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 464 (574)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+.+ .+|..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 555555444321 223333333332 2366666677777877776 566666666665 4555666666666
Q ss_pred HHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043999 465 LCMKG-NMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPE 543 (574)
Q Consensus 465 ~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 543 (574)
+.+.+ +-.++...+..+.. .++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 66653 24567777777764 4577778888899999888 56777777777653 3 345778889999985 7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhhh
Q 043999 544 AEVLLNQMLKLGLKPSVSLYNILYRAKN 571 (574)
Q Consensus 544 A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 571 (574)
|...+.++.+. .||...-...+.++.
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 99999999865 567776666666554
No 305
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.15 E-value=3.8 Score=34.64 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHhhhh
Q 043999 506 SYRALRLLGEMNEKGLVPNI-ASYSSTIGVLCQDG-----------KWPEAEVLLNQMLKLGLKPSVSLYNILYRAKN 571 (574)
Q Consensus 506 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 571 (574)
+++|+.-|++.+. +.|+. .++..+..++...+ .+++|...|++..+. +|+...|+.-+....
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 3445555666666 56765 67777777776543 256677777777755 899999988776543
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=6 Score=36.58 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=68.8
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 043999 415 GITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSG---FSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDV 491 (574)
Q Consensus 415 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 491 (574)
|......+...++..-....+++.+...+-++.... ..|+...+ ..+. ++-.=+.++++.++..-++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 344445556666666666778888888777776431 11221111 2222 233345678888888888888888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 492 VYNMMIFGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 492 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
+++.+++.+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999988888887777654
No 307
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.64 E-value=22 Score=33.53 Aligned_cols=49 Identities=18% Similarity=0.359 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCC
Q 043999 192 NKAFEVLNQLEEMGFSPNVVIYTSLIDGCCK--NG----DIERAKMLFRKIGELG 240 (574)
Q Consensus 192 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~ 240 (574)
++..++++.|.+.|++.+..+|-+....... .. ...+|..+|+.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 3445566666666666665544442222222 11 2345556666665544
No 308
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.46 E-value=16 Score=31.94 Aligned_cols=76 Identities=17% Similarity=0.066 Sum_probs=48.0
Q ss_pred HHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043999 164 FSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELG 240 (574)
Q Consensus 164 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 240 (574)
|.+.....|.-+..||-+.--+...|+++.|.+.|+...+....-+-...|.-|. +.--|++.-|.+-+...-+.+
T Consensus 88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred hhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC
Confidence 3333333355567888888888899999999999998887543322222333332 223677888877666665543
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.20 E-value=8.9 Score=28.94 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Q 043999 508 RALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYR 568 (574)
Q Consensus 508 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 568 (574)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++++-...+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44455555555566666666666677777777777777776666643 1222225555543
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.14 E-value=10 Score=32.71 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=62.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043999 428 DSFVRSDDMEKAFEMYSLMQKSGFSPDV-----YTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCK 502 (574)
Q Consensus 428 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 502 (574)
+-+.+.|++++|..-|...+..- ++.. ..|..-..++.+.+.++.|++-..+.++.++. ......--..+|-+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 34778889999999888888763 3332 23444455677888888888888888775432 22333333556777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 043999 503 EGNSYRALRLLGEMNEK 519 (574)
Q Consensus 503 ~g~~~~A~~~~~~m~~~ 519 (574)
..++++|++=++++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88888888888888885
No 311
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.98 E-value=5.4 Score=29.69 Aligned_cols=45 Identities=4% Similarity=0.013 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 438 KAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMW 482 (574)
Q Consensus 438 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 482 (574)
++.+-++.+......|++.+..+.+++|-+.+++.-|.++|+...
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333334444444444444444444555555555555555444443
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.50 E-value=1.5 Score=26.59 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLD 134 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 134 (574)
.+++.|...|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678889999999999999999988764
No 313
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.48 E-value=48 Score=35.18 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=98.0
Q ss_pred cchhHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHH----H-HHHHHHHHHhcCChhHHHHHHHHcccCC-----C
Q 043999 104 TKSRLYESIIDAHL-KSRLSDQALFYFHQMLDSGVRPRSN----T-FNSLLIFVIKSCSFDKGWLFFSENRCKV-----E 172 (574)
Q Consensus 104 ~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~----~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~ 172 (574)
....++-.+...|. ...+++.|...+++.....-.++.. . -..++..+.+.+... |....++..... .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 34577788888887 6688999999999875432222221 1 223455666666655 888887765541 1
Q ss_pred CCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHhCC------
Q 043999 173 LDVYSFGIL-IKGCCEAGDLNKAFEVLNQLEEMG---FSPNVVIYTSLIDGCC--KNGDIERAKMLFRKIGELG------ 240 (574)
Q Consensus 173 ~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~------ 240 (574)
+-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+..+++....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~ 215 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLD 215 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccC
Confidence 223334444 333334479999999998876532 2344445555555443 4565677777777663211
Q ss_pred ---CCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 043999 241 ---LVATQHTYTVLICGL--FKNGLQKDGFEFYEKMQ 272 (574)
Q Consensus 241 ---~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~ 272 (574)
..|-..+|..+++.+ ...|+++.+.+.++++.
T Consensus 216 ~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 216 PSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123445666666554 45677666665555543
No 314
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.45 E-value=37 Score=33.87 Aligned_cols=242 Identities=10% Similarity=0.053 Sum_probs=132.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHCC-CCC-ChhhHHHHHHHHHhcCCHHHHH
Q 043999 299 GFKLFDEMRHREVACNVVTYNTLICGLCKE------MRVQEAERLLDQMKMAG-ISP-NVITYNKLIDGFCDAGETDKAF 370 (574)
Q Consensus 299 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~------~~~~~A~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~ 370 (574)
...+|++..+. -|+...|+..|..|... ........+++...+.+ ..+ ....|..+.-.++......++.
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 33555555432 23555566666655432 23455556666655433 222 2344555555555555443332
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHH-HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-HHHH--HHHHHH
Q 043999 371 RLFNQLKSNGQSPSVVTYNVLIRAFSKAG-NSKM-ASDLVREMEERGITPSEVTYTILIDSFVRSDD-MEKA--FEMYSL 445 (574)
Q Consensus 371 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A--~~~~~~ 445 (574)
..+ ...++..+...|-.-+....+.. +.+- -..++......-..+-...|+... .++ .... ..++..
T Consensus 379 ~~l---~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 379 VKL---TTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred HHh---hHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 222 22223346666655555544322 1111 112222333221222223333333 122 2211 123333
Q ss_pred HHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCC
Q 043999 446 MQKSGFSPDVYTY-GVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCK--EGNSYRALRLLGEMNEKGLV 522 (574)
Q Consensus 446 ~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~ 522 (574)
....+ .|+..++ +.++..+.+.|-.++|...+..+... ++|+...|..+|..=.. .-+..-+.++++.|... +-
T Consensus 451 ~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg 527 (568)
T KOG2396|consen 451 LLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FG 527 (568)
T ss_pred HHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hC
Confidence 44443 4555544 56778888899999999999998775 45677788877754322 22377888899988865 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 523 PNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 523 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
.|+..|.-....-...|..+.+-.++.++.+
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 6888888888777788999998888887765
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.26 E-value=2 Score=25.99 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 492 VYNMMIFGYCKEGNSYRALRLLGEMN 517 (574)
Q Consensus 492 ~~~~li~~~~~~g~~~~A~~~~~~m~ 517 (574)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.13 E-value=50 Score=34.98 Aligned_cols=54 Identities=15% Similarity=0.034 Sum_probs=25.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEMGFSP---NVVIYTSLIDGCCKNGDIERAKMLFRKIGE 238 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 238 (574)
+.+.+.+.+++|+++.+.... ..| -.......|+.+...|++++|-...-+|..
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 334455555555555444322 122 123444555555555555555555555543
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.88 E-value=4.3 Score=37.85 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=56.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043999 428 DSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSY 507 (574)
Q Consensus 428 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 507 (574)
+.|.++|.+++|+.+|....... +-+.+++..-..+|.+..++..|+.-...++..+-. -...|.--+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHH
Confidence 34888888888888887776642 337777777777888888888777766666543100 1222333333333345555
Q ss_pred HHHHHHHHHHHCCCCCC
Q 043999 508 RALRLLGEMNEKGLVPN 524 (574)
Q Consensus 508 ~A~~~~~~m~~~g~~p~ 524 (574)
+|.+-++..++ +.|+
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 55555555555 4555
No 318
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.81 E-value=22 Score=30.65 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=45.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043999 463 HGLCMKGNMKEASKLFNSMWETKLEPNDVVY-----NMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQ 537 (574)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 537 (574)
..+..+|++++|+.-++..+.. |....+ --|.......|.+++|+..++...+.++. ......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 4455566666666666655432 122222 22334455566666666666555543321 1122333456666
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 043999 538 DGKWPEAEVLLNQMLKLG 555 (574)
Q Consensus 538 ~g~~~~A~~~~~~m~~~g 555 (574)
.|+-++|+.-|++.++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 666666666666666553
No 319
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.73 E-value=53 Score=34.90 Aligned_cols=438 Identities=15% Similarity=0.134 Sum_probs=223.6
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHcccCC-CCCH---
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLD-SGVRPR--SNTFNSLLIFVI-KSCSFDKGWLFFSENRCKV-ELDV--- 175 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~p~--~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~~-~~~~--- 175 (574)
....-|..||.. |+..++-+.+ ..++|. ..++-.+...+. ...++++|...+++..... .++.
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345667777765 5666666663 333443 334555666665 7889999999999764431 1222
Q ss_pred --HHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCh
Q 043999 176 --YSFGILIKGCCEAGDLNKAFEVLNQLEEMG----FSPNVVIYTSL-IDGCCKNGDIERAKMLFRKIGELG---LVATQ 245 (574)
Q Consensus 176 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~ 245 (574)
.....+++.+.+.+... |...+++.++.- ..+-...+.-+ +..+...++...|.+.++.+...- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 22446677777777666 999888876531 11223333444 333434489999999999886532 22334
Q ss_pred hhHHHHHHHHH--hcCCHHHHHHHHHHHHHCC---------CCCCHhhHHHHHHHH--HhcCCHHHHHHHHHHHHh----
Q 043999 246 HTYTVLICGLF--KNGLQKDGFEFYEKMQLNG---------VSPSLYTYNCLIHEY--CNEGKVSEGFKLFDEMRH---- 308 (574)
Q Consensus 246 ~~~~~li~~~~--~~g~~~~a~~~~~~~~~~g---------~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~---- 308 (574)
..+..++.+.. +.+..+++.+...++.... ..|-..+|..+++.+ ...|+++.+...++++.+
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44445554443 4566677777777664321 123455666666554 457777677666555421
Q ss_pred ---CC----------CC-------------CCHHHH---------HHHHHH--HHhcCCHHHHHHHHHH-------HH-H
Q 043999 309 ---RE----------VA-------------CNVVTY---------NTLICG--LCKEMRVQEAERLLDQ-------MK-M 343 (574)
Q Consensus 309 ---~~----------~~-------------~~~~~~---------~~li~~--~~~~~~~~~A~~~~~~-------m~-~ 343 (574)
.. ++ +....| .-++.+ .+..+..+.|.+++++ .. .
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 11 00 111111 111222 2334444455555544 44 1
Q ss_pred CCCCCCh--------hhHHHHHH---------HHHhcCCHHHHHHHHHHHHHCCC-CC-----CHHHHHHHHHH--HHhc
Q 043999 344 AGISPNV--------ITYNKLID---------GFCDAGETDKAFRLFNQLKSNGQ-SP-----SVVTYNVLIRA--FSKA 398 (574)
Q Consensus 344 ~g~~~~~--------~~~~~li~---------~~~~~g~~~~A~~~~~~~~~~g~-~~-----~~~~~~~li~~--~~~~ 398 (574)
....+.. ..|...+. ..+-.+++..|....+.+.+... .| ....+..++.+ +...
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 1111111 11211111 22346889899999988875421 11 12233333333 4457
Q ss_pred CChHHHHHHHH--------HHHHCCCCCCHhHHHHH--HHHHH--hcCCHHH--HHHHHHHHHHC-CCCC--CHHHHHHH
Q 043999 399 GNSKMASDLVR--------EMEERGITPSEVTYTIL--IDSFV--RSDDMEK--AFEMYSLMQKS-GFSP--DVYTYGVL 461 (574)
Q Consensus 399 g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l--i~~~~--~~g~~~~--A~~~~~~~~~~-~~~~--~~~~~~~l 461 (574)
|+.+.|...|. .....+...+..++..+ +-.+. .....++ +.++++.+... .-.| +..++..+
T Consensus 418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~ 497 (608)
T PF10345_consen 418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL 497 (608)
T ss_pred CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence 99999999997 44444444444444332 11122 2222223 66777666432 1122 22333333
Q ss_pred -HHHHHhcC--CHHHHHHHHHHHHhCC---CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHH
Q 043999 462 -IHGLCMKG--NMKEASKLFNSMWETK---LEP---NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGL-VP--NIASYS 529 (574)
Q Consensus 462 -i~~~~~~g--~~~~A~~~~~~~~~~~---~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p--~~~~~~ 529 (574)
+.++.... ...++...+.+..+.- ... -..+++.+...+. .|+..+..+.........- .| ....|.
T Consensus 498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~ 576 (608)
T PF10345_consen 498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH 576 (608)
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 33332211 2234444444333211 111 1233444444444 6777776555544332111 12 335564
Q ss_pred HHH-----HHHHhcCCHHHHHHHHHHHH
Q 043999 530 STI-----GVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 530 ~l~-----~~~~~~g~~~~A~~~~~~m~ 552 (574)
.+. ..+...|+.++|.....+..
T Consensus 577 ~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 577 LVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 443 34667899999998887765
No 320
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.13 E-value=12 Score=32.26 Aligned_cols=91 Identities=12% Similarity=0.015 Sum_probs=62.8
Q ss_pred HHhcCChhHHHHHHHHcccCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 043999 151 VIKSCSFDKGWLFFSENRCKVELD-----VYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGD 225 (574)
Q Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 225 (574)
+.+.|++++|.+-|......+|+. ...|..-..++.+.+.++.|++-..+.++.+.. .......-..+|-+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 456777788777777766654433 234555667778888888888888888875421 22333344567888888
Q ss_pred HHHHHHHHHHHHhCCCC
Q 043999 226 IERAKMLFRKIGELGLV 242 (574)
Q Consensus 226 ~~~A~~~~~~~~~~~~~ 242 (574)
+++|+.-|+++.+..+.
T Consensus 184 ~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999988886543
No 321
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.09 E-value=57 Score=34.74 Aligned_cols=232 Identities=13% Similarity=0.007 Sum_probs=123.3
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH--HHHHHcccCCCCCHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGW--LFFSENRCKVELDVYSFGI 180 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~--~~~~~~~~~~~~~~~~~~~ 180 (574)
+.+...-.....+....|+.++|....+.+-..|. ..+..++.++..+.+.|...... +-++.+.. ..+...-..
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~--~~~~~lA~~ 202 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMK--AGNTGLVTY 202 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 45556667777888888998888888888877763 35668888888888777665432 22222221 122222222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH---------CCCCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHhCC-CCCC--hh
Q 043999 181 LIKGCCEAGDLNKAFEVLNQLEE---------MGFSPNVVIYTSLIDGCC--KNGDIERAKMLFRKIGELG-LVAT--QH 246 (574)
Q Consensus 181 li~~~~~~g~~~~A~~~~~~m~~---------~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~-~~~~--~~ 246 (574)
+...+. .+.....+.+..+.. ..++|+...-..++.++. ...+.+.|..++.+..... ..+. ..
T Consensus 203 l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~ 280 (644)
T PRK11619 203 LAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQE 280 (644)
T ss_pred HHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 222210 000000011111110 011123221221222222 3456688888888764433 2111 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 247 TYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLC 326 (574)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 326 (574)
.+..+.......+...++.+.+....... .|......-+..-.+.++++.+...+..|....-. ...-..-+..++.
T Consensus 281 ~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~ 357 (644)
T PRK11619 281 LRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLL 357 (644)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHH
Confidence 34444444444433566777766654332 23444445555555788888888888887543221 3334445666666
Q ss_pred hcCCHHHHHHHHHHHH
Q 043999 327 KEMRVQEAERLLDQMK 342 (574)
Q Consensus 327 ~~~~~~~A~~~~~~m~ 342 (574)
..|+.++|...|+.+.
T Consensus 358 ~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 358 EQGRKAEAEEILRQLM 373 (644)
T ss_pred HcCCHHHHHHHHHHHh
Confidence 7899999988888864
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.95 E-value=5.6 Score=37.18 Aligned_cols=88 Identities=11% Similarity=0.030 Sum_probs=46.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChh
Q 043999 114 DAHLKSRLSDQALFYFHQMLDSGVRP-RSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLN 192 (574)
Q Consensus 114 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 192 (574)
+-|+++|.+++|++.|...+.. .| |.+++..-..+|.+..++..|..-.+........-+-+|..-+.+--..|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 4566777777777777766553 33 56666666666777666666655444443321112223333333333344555
Q ss_pred HHHHHHHHHHH
Q 043999 193 KAFEVLNQLEE 203 (574)
Q Consensus 193 ~A~~~~~~m~~ 203 (574)
+|.+=.+..++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55555555444
No 323
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.55 E-value=33 Score=31.62 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHHHH
Q 043999 492 VYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQML-----KLGLKPSVSLYNI 565 (574)
Q Consensus 492 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~ 565 (574)
+++.....|..+|.+.+|.++-++....+ +.+...|-.++..+...|+--.|.+.++++. +.|+.-|...++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieew 358 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEW 358 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHH
Confidence 45556678899999999999999998853 4577888889999999999888888888875 4588888777654
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.53 E-value=74 Score=35.59 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=9.6
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 043999 111 SIIDAHLKSRLSDQALFYFH 130 (574)
Q Consensus 111 ~li~~~~~~g~~~~A~~~~~ 130 (574)
+.++-++...++.+|+++.+
T Consensus 682 a~vr~~l~~~~y~~AF~~~R 701 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMR 701 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544433
No 325
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.45 E-value=26 Score=30.26 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----
Q 043999 387 TYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTI--LIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYG----- 459 (574)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----- 459 (574)
.|..++.... .+.+ +......++..........++.. +...+...+++++|...++..... |....+.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3444444432 3333 45555566665432222222222 345678899999999999887753 2222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 460 VLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKG 520 (574)
Q Consensus 460 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 520 (574)
-|.......|.+|+|+..++...+.+. .......-.+.+...|+-++|+.-|++.++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 345667889999999999998765432 23334555688999999999999999999875
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.29 E-value=11 Score=32.60 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 043999 524 NIASYSSTIGVLCQDGKWPEA 544 (574)
Q Consensus 524 ~~~~~~~l~~~~~~~g~~~~A 544 (574)
|+..+.+|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444444
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.19 E-value=22 Score=29.19 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=6.6
Q ss_pred hcCChhHHHHHHHHHH
Q 043999 187 EAGDLNKAFEVLNQLE 202 (574)
Q Consensus 187 ~~g~~~~A~~~~~~m~ 202 (574)
..|++++|.++|+++.
T Consensus 56 ~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 56 ARGNYDEAARILRELL 71 (153)
T ss_pred HcCCHHHHHHHHHhhh
Confidence 3344444444444443
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.16 E-value=17 Score=37.01 Aligned_cols=100 Identities=24% Similarity=0.262 Sum_probs=50.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 043999 361 CDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAF 440 (574)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 440 (574)
.+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|.+..+ |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 44566666655544332 444566666666666666666665554432 333444445555554444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 441 EMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSM 481 (574)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 481 (574)
.+-....+.| ..+.. .-+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~g-~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQG-KNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhc-ccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 4444444444 22221 12344556666666655543
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.98 E-value=7.4 Score=34.03 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 043999 457 TYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKG--LVPNIASYSSTIGV 534 (574)
Q Consensus 457 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~ 534 (574)
|.+.-++.+.+.+++++|+...++-++..+. |..+-..++..||-.|++++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566777888899999888887776433 55566777888899999999988777666531 22234556655544
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.33 E-value=2.3 Score=24.42 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 043999 495 MMIFGYCKEGNSYRALRLLGEMN 517 (574)
Q Consensus 495 ~li~~~~~~g~~~~A~~~~~~m~ 517 (574)
.+...|...|++++|.+.|++..
T Consensus 6 ~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 6 NLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334444444444444444433
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.84 E-value=7.2 Score=34.07 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=21.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043999 112 IIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGW 161 (574)
Q Consensus 112 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 161 (574)
.+..+.+.++..+|+.+.++-++.. +.|..+-..+++.||-.|++++|.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl 55 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKAL 55 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHH
Confidence 3444444455555555444444432 223334444444444444444443
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.39 E-value=15 Score=31.82 Aligned_cols=80 Identities=15% Similarity=0.037 Sum_probs=62.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCH
Q 043999 430 FVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWET---KLEPNDVVYNMMIFGYCKEGNS 506 (574)
Q Consensus 430 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~ 506 (574)
+.+.|+ ++|.+.|-.+...+.-.++.....|...|. ..+.+++..++.++++. +-.+|+..+..|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445565 788888888888776666776666666555 67899999999998864 3367899999999999999999
Q ss_pred HHHHH
Q 043999 507 YRALR 511 (574)
Q Consensus 507 ~~A~~ 511 (574)
+.|.-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 98853
No 333
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.36 E-value=15 Score=36.14 Aligned_cols=88 Identities=7% Similarity=0.054 Sum_probs=44.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043999 254 GLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQE 333 (574)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 333 (574)
.+...|+++.+...+...... +.....+...+++...+.|++++|...-+.|+...++ ++..........-..|-+++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 344556666666555444322 2223445555566666666666666666666555444 33333332333334455556
Q ss_pred HHHHHHHHHH
Q 043999 334 AERLLDQMKM 343 (574)
Q Consensus 334 A~~~~~~m~~ 343 (574)
+...|+++..
T Consensus 410 ~~~~wk~~~~ 419 (831)
T PRK15180 410 SYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHhc
Confidence 6655555544
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.21 E-value=50 Score=31.94 Aligned_cols=67 Identities=18% Similarity=0.102 Sum_probs=51.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043999 348 PNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSP---SVVTYNVLIRAFSKAGNSKMASDLVREMEER 414 (574)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 414 (574)
....+|..+...+.+.|.++.|...+..+...+... ++.....-...+-..|+..+|+..+++..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678888999999999999999999988754221 3344445567777889999999999988873
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.86 E-value=2.3 Score=22.82 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 043999 109 YESIIDAHLKSRLSDQALFYFH 130 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~ 130 (574)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456666667777777766654
No 336
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.17 E-value=80 Score=33.54 Aligned_cols=213 Identities=17% Similarity=0.128 Sum_probs=86.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHcccC-CCCCHH---HHH
Q 043999 111 SIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCS-------FDKGWLFFSENRCK-VELDVY---SFG 179 (574)
Q Consensus 111 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~-------~~~A~~~~~~~~~~-~~~~~~---~~~ 179 (574)
.+|-.+.|+|.+++|.++..+..+. .......+...+..+....+ -++...-|++.... ...|++ .|.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 5677788999999999998655443 34455667777877766432 12344445544433 222443 233
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCC-----------HHHHHHHHHHHHhCCCCCChh
Q 043999 180 ILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVV--IYTSLIDGCCKNGD-----------IERAKMLFRKIGELGLVATQH 246 (574)
Q Consensus 180 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~ 246 (574)
++..+=....... ++ ..+.. .|-.|. +.+... +++-.+...+..+....+ ..
T Consensus 195 ilg~cD~~~~~~~---~V---------~~tiED~LW~~L~--~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~ 259 (613)
T PF04097_consen 195 ILGRCDLSRRHLP---EV---------ARTIEDWLWLQLS--LVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GS 259 (613)
T ss_dssp HHHT--CCC-S-T---TC-----------SHHHHHHHHHH--H---TTSSSSSSS----HHHHHHHHHHH-GGGCTT---
T ss_pred HHhcCCccccchH---HH---------hCcHHHHHHHHHH--hhccCCCccccccccccHHHHHHHHHHhchhhccc-ch
Confidence 3311111001110 00 01111 122221 111111 122222222332322322 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 043999 247 TYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREV-ACNVVTYNTLICGL 325 (574)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~ 325 (574)
..-.....+.-.|+++.|++++-+- .+...|.+.+...+..| |-+......-..+..... .|...-+..||..|
T Consensus 260 ~p~~Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y 334 (613)
T PF04097_consen 260 NPLLYFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQY 334 (613)
T ss_dssp ----HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHH
Confidence 2223345667789999999988771 12233444444433332 322222211132222211 11125577788888
Q ss_pred Hh---cCCHHHHHHHHHHHHHC
Q 043999 326 CK---EMRVQEAERLLDQMKMA 344 (574)
Q Consensus 326 ~~---~~~~~~A~~~~~~m~~~ 344 (574)
++ ..+..+|.++|-.+...
T Consensus 335 ~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 335 TRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHhccCHHHHHHHHHHHHHc
Confidence 75 56778888888776654
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.97 E-value=30 Score=28.45 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=27.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 432 RSDDMEKAFEMYSLMQKSGFSPD---VYTYGVLIHGLCMKGNMKEASKLFNSMWET 484 (574)
Q Consensus 432 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 484 (574)
..++.+++..+++.|.-. .|+ ..++.. ..+...|++++|.++|++..+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 356666777666666543 222 222222 2345667777777777776654
No 338
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.42 E-value=1 Score=37.16 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=24.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFR 234 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 234 (574)
+.+.+.+..+.....++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344445555555555555544333344455555555555554444444443
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.41 E-value=5.1 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDS 135 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 135 (574)
+|..+...|...|++++|...|++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5777888888889999999888887763
No 340
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.32 E-value=73 Score=31.97 Aligned_cols=219 Identities=11% Similarity=0.151 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC------CHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHH
Q 043999 333 EAERLLDQMKMAGISPNVITYNKLIDGFCDAG------ETDKAFRLFNQLKSNG-QSP-SVVTYNVLIRAFSKAGNSKMA 404 (574)
Q Consensus 333 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~g-~~~-~~~~~~~li~~~~~~g~~~~A 404 (574)
....+|+...+. .|+...|+..|+.|...- .+.....+|+...+.+ ..+ ....|..+.-.++......++
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344666666653 456666766666655432 3344445555544432 222 234455555555554433332
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHH-HHHHH
Q 043999 405 SDLVREMEERGITPSEVTYTILIDSFVRSD-DMEK-AFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGN-MKEAS-KLFNS 480 (574)
Q Consensus 405 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~-~~~~~ 480 (574)
-..+...++..+...|..-+....+.. +++- -.+.+......-..+....|++.. .|+ .+... .++-.
T Consensus 378 ---a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 378 ---AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred ---HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 222222233335555554444443221 2211 112222333222233333444433 222 22111 11111
Q ss_pred HHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH-HcCC
Q 043999 481 MWETKLEPNDVVY-NMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQ--DGKWPEAEVLLNQML-KLGL 556 (574)
Q Consensus 481 ~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~-~~g~ 556 (574)
....-..|+..++ +.++..+.+.|-.++|...+..+... .+|+...|.-+|..-.. .-+...+..+++.|. ..|
T Consensus 450 a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg- 527 (568)
T KOG2396|consen 450 ALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG- 527 (568)
T ss_pred HHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-
Confidence 1122234565554 56778888999999999999999986 46677777777753221 123788899999998 467
Q ss_pred CCCHHHHH
Q 043999 557 KPSVSLYN 564 (574)
Q Consensus 557 ~p~~~~~~ 564 (574)
.|+..|.
T Consensus 528 -~d~~lw~ 534 (568)
T KOG2396|consen 528 -ADSDLWM 534 (568)
T ss_pred -CChHHHH
Confidence 3444443
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.25 E-value=3.2 Score=23.47 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=10.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043999 532 IGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 532 ~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
..++.+.|++++|.+.|+++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3444444555555555555543
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.87 E-value=4.6 Score=25.18 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=16.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 043999 181 LIKGCCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 181 li~~~~~~g~~~~A~~~~~~m~~~ 204 (574)
+..+|.+.|+.+.|+++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 556677777777777777776654
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.86 E-value=4.7 Score=25.15 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=22.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 043999 111 SIIDAHLKSRLSDQALFYFHQMLDSG 136 (574)
Q Consensus 111 ~li~~~~~~g~~~~A~~~~~~~~~~g 136 (574)
.|..+|...|+.+.|.+++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47788999999999999999988765
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.89 E-value=63 Score=29.44 Aligned_cols=187 Identities=16% Similarity=0.213 Sum_probs=98.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhc
Q 043999 257 KNGLQKDGFEFYEKMQLNGVSPSLY---TYNCLIHEYCNEGKVSEGFKLFDEMRHR---EV--ACNVVTYNTLICGLCKE 328 (574)
Q Consensus 257 ~~g~~~~a~~~~~~~~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~ 328 (574)
+...+++|+.-|.+.++........ ..-.++..+.+.|++++....+.+++.- .+ .-...+.|.+++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3456777888887777542222222 3345667777778888777777776431 00 11344566666666666
Q ss_pred CCHHHHHHHHHHHHHC-CCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CC-------HHHHHHHH
Q 043999 329 MRVQEAERLLDQMKMA-GISPNVI----TYNKLIDGFCDAGETDKAFRLFNQLKSNGQS----PS-------VVTYNVLI 392 (574)
Q Consensus 329 ~~~~~A~~~~~~m~~~-g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~----~~-------~~~~~~li 392 (574)
.+.+--..+|+.-.+. .-..+.. |-..|...|...+++.+..+++.++...-.. .| ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666555555542211 0011222 2245666677777777777777666543111 11 23455556
Q ss_pred HHHHhcCChHHHHHHHHHHHH-CCCCCCHhHHHHHHH----HHHhcCCHHHHHHHH
Q 043999 393 RAFSKAGNSKMASDLVREMEE-RGITPSEVTYTILID----SFVRSDDMEKAFEMY 443 (574)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~ 443 (574)
+.|....+-..-..++++... ...-|.+.....+-. ...+.|++++|..-|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 666666666666666666543 222344433333222 124556676665433
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.57 E-value=4.1 Score=22.95 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 043999 110 ESIIDAHLKSRLSDQALFYFHQMLDS 135 (574)
Q Consensus 110 ~~li~~~~~~g~~~~A~~~~~~~~~~ 135 (574)
-.+..+|.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566677778888888888887764
No 346
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.88 E-value=75 Score=29.83 Aligned_cols=86 Identities=20% Similarity=0.147 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------
Q 043999 472 KEASKLFNSMWETKLEPNDVVYNMMIFGYCK----EGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDG-------- 539 (574)
Q Consensus 472 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-------- 539 (574)
..|...+.++-..+ +......+...|.. ..+.++|..+|++..+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 35666666665544 33334444433322 2356677777777766653 22221222 333333
Q ss_pred -------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 043999 540 -------KWPEAEVLLNQMLKLGLKPSVSLYN 564 (574)
Q Consensus 540 -------~~~~A~~~~~~m~~~g~~p~~~~~~ 564 (574)
+...|..++......|.........
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6777777777777776655554444
No 347
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.34 E-value=20 Score=36.39 Aligned_cols=103 Identities=14% Similarity=-0.084 Sum_probs=59.7
Q ss_pred HhcCChhHHHHHHHHcccC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 043999 152 IKSCSFDKGWLFFSENRCK-VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAK 230 (574)
Q Consensus 152 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 230 (574)
...|+...|.+.+...... ....-+..-.|.+.+.+.|-.-.|-.++.+.+... ...+.++-.+.+++.-..+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3557777776666654433 11122233345555666666666777666655543 234556666777777777777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHH
Q 043999 231 MLFRKIGELGLVATQHTYTVLICGLF 256 (574)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~li~~~~ 256 (574)
+.|++..+.... +.+.-+.|...-|
T Consensus 697 ~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 777777665543 4555555554444
No 348
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=73.85 E-value=96 Score=30.61 Aligned_cols=373 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 043999 145 NSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNG 224 (574)
Q Consensus 145 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 224 (574)
|-++.-|...|+-.+|.+..+++.. +.+.....-+++...+.-..|.-+.-.+...+..-+...-+.+..++.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v----sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~ 293 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV----SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKG 293 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC----CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhc
Q ss_pred --------CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 043999 225 --------DIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKV 296 (574)
Q Consensus 225 --------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 296 (574)
++..|...|+.+....+.-+-..-+++-..-...|+.+. .+.|++ +...+|.-|...|+.
T Consensus 294 ~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------~~~~IIqEYFlsgDt 361 (645)
T KOG0403|consen 294 GSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------DLTPIIQEYFLSGDT 361 (645)
T ss_pred cccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-----------hhHHHHHHHHhcCCh
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CHHHHHHH
Q 043999 297 SEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAG----ETDKAFRL 372 (574)
Q Consensus 297 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~ 372 (574)
.+..+.++.+-.....|-...+-.-+..=.++..-+.|-.++..+.-. +.+....-+.....+-... +...|.+.
T Consensus 362 ~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD~p~a~~e 440 (645)
T KOG0403|consen 362 PEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALDIPRASQE 440 (645)
T ss_pred HHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhccccccHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------CCCCCHhHHHHHHHHHH
Q 043999 373 FNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEER---------------------GITPSEVTYTILIDSFV 431 (574)
Q Consensus 373 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------~~~p~~~~~~~li~~~~ 431 (574)
+......-+-.++-.-..+=....+......+.+.++..... .+.--..-...|+.-|.
T Consensus 441 lalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~ 520 (645)
T KOG0403|consen 441 LALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYE 520 (645)
T ss_pred HHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------
Q 043999 432 RSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEG------- 504 (574)
Q Consensus 432 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g------- 504 (574)
..|++.+|.+..+++--- +-....++.+++.+.-+.|+-...+.++++.... ...|-+.|-.+|.+..
T Consensus 521 ~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV~dsl~Dls 595 (645)
T KOG0403|consen 521 LSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERVYDSLPDLS 595 (645)
T ss_pred hccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhhhccCcccc
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043999 505 -NSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGK 540 (574)
Q Consensus 505 -~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 540 (574)
+...|.+.|+...+.+.. +...|..+-..|-.-++
T Consensus 596 LDvPna~ekf~~~Ve~~~~-~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 596 LDVPNAYEKFERYVEECFQ-NGIISKQLRDLCPSRLR 631 (645)
T ss_pred cCCCcHHHHHHHHHHHHHH-cCchhHHhhhcchhhhc
No 349
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.31 E-value=1.5e+02 Score=32.60 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHH---HHHhcCChhHHHHHHHHcccC
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSN---TFNSLLI---FVIKSCSFDKGWLFFSENRCK 170 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~ll~---~~~~~g~~~~A~~~~~~~~~~ 170 (574)
+..=+..+.+...+++|..+-+.....+ |... .+..... -+..+|++++|.+.|.++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 6677778888888999998876654422 2111 1222222 256789999999999988753
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.25 E-value=12 Score=26.75 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 043999 467 MKGNMKEASKLFNSMWETKLEPN--DVVYNMMIFGYCKEGNSYRALRL 512 (574)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 512 (574)
...+-++|+..|...+++-..|. -.++..++.+|+..|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554422221 22344445555555555554443
No 351
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=72.67 E-value=1.3e+02 Score=31.62 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhccCChHHHHHHH
Q 043999 45 QSISIILRLLLSKMSSHSHAAAQTLI 70 (574)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~a~~~~ 70 (574)
..|...+..++- .|.++.|.+++
T Consensus 149 p~FW~~v~~lvl---rG~~~~a~~lL 171 (566)
T PF07575_consen 149 PDFWDYVQRLVL---RGLFDQARQLL 171 (566)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHH
T ss_pred hhHHHHHHHHHH---cCCHHHHHHHH
Confidence 456667777777 79999998887
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.04 E-value=24 Score=35.89 Aligned_cols=101 Identities=11% Similarity=-0.099 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043999 258 NGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERL 337 (574)
Q Consensus 258 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 337 (574)
.|+...|...+.........-..+....|.....+.|...+|..++.+.+... ...+.++..+..++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 55666666655554432211122233444555555556666666665554443 22445555666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHH
Q 043999 338 LDQMKMAGISPNVITYNKLIDGF 360 (574)
Q Consensus 338 ~~~m~~~g~~~~~~~~~~li~~~ 360 (574)
|++..+.. +.+...-+.|...-
T Consensus 699 ~~~a~~~~-~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSLKLIR 720 (886)
T ss_pred HHHHHhcC-CCChhhHHHHHHHH
Confidence 66655542 23344444444433
No 353
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.02 E-value=28 Score=27.48 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043999 473 EASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTI 532 (574)
Q Consensus 473 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 532 (574)
+..+-++.....++.|++.....-+.++.+.+++..|.++|+-...+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 44555666666677788888888888888888888888888777765 333333444443
No 354
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.74 E-value=1.6e+02 Score=32.09 Aligned_cols=95 Identities=17% Similarity=0.317 Sum_probs=55.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043999 119 SRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVL 198 (574)
Q Consensus 119 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 198 (574)
+.++++.+.+.+...--| .++|.-+.|.|..+-|+.+.+.-..++ ..+...|+++.|++.-
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-----------~LaLe~gnle~ale~a 666 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-----------ELALECGNLEVALEAA 666 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-----------eeehhcCCHHHHHHHH
Confidence 345666665544322111 235666667777776766554433321 2234567777777665
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 199 NQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGE 238 (574)
Q Consensus 199 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 238 (574)
.++- +..+|..|.....++|+.+-|+..|++...
T Consensus 667 kkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 667 KKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 5442 556777777777777777777777766543
No 355
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.42 E-value=1.6e+02 Score=32.06 Aligned_cols=338 Identities=13% Similarity=0.091 Sum_probs=165.2
Q ss_pred HHHHHHHHhcCCC-------CCCCCHHHHHHHHHhhCCCCCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 043999 67 QTLILKIISGRIT-------SSSFTPRSLLCHLTQLFPSSSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRP 139 (574)
Q Consensus 67 ~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 139 (574)
..+++++...++. ...|.+..++..+...-++-..++.-......--..+...|.+++|++- .+..|
T Consensus 301 ~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~h---AlaA~--- 374 (894)
T COG2909 301 QAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDH---ALAAG--- 374 (894)
T ss_pred HHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHH---HHhCC---
Confidence 3455555544432 2345566666655443222111111123344445556677777777653 33333
Q ss_pred CHHHHHHHHHHH----HhcCChhHHHHHHHHcccC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---
Q 043999 140 RSNTFNSLLIFV----IKSCSFDKGWLFFSENRCK-VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVV--- 211 (574)
Q Consensus 140 ~~~~~~~ll~~~----~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 211 (574)
|+.....++.-+ ...+++.--....+.++.. ...++..--.-+-......++++|..++.++...=..|+..
T Consensus 375 d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~ 454 (894)
T COG2909 375 DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQG 454 (894)
T ss_pred CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchh
Confidence 333333444332 2333333333333333322 11111111111223345788999999988876542222211
Q ss_pred ----hHHHHHHH-HHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 043999 212 ----IYTSLIDG-CCKNGDIERAKMLFRKIGEL----GLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYT 282 (574)
Q Consensus 212 ----~~~~li~~-~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 282 (574)
.++.|-.. ....|++++|.++-+..... -..+....+..+..+..-.|++++|..+.....+..-.-|+..
T Consensus 455 ~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 455 DLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence 33333322 33578899999888776543 2334566777788888889999999988876654322233333
Q ss_pred HHHH-----HHHHHhcCC--HHHHHHHHHHHHhCC-----C-CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCC
Q 043999 283 YNCL-----IHEYCNEGK--VSEGFKLFDEMRHRE-----V-ACNVVTYNTLICGLCK-EMRVQEAERLLDQMKMAGISP 348 (574)
Q Consensus 283 ~~~l-----i~~~~~~g~--~~~A~~~~~~m~~~~-----~-~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~~ 348 (574)
+... ...+...|. ..+....|....... . .+-..++..+..++.+ .+...++..-++.-......|
T Consensus 535 l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~ 614 (894)
T COG2909 535 LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQP 614 (894)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccch
Confidence 3222 233455663 333334444332221 0 1122344445555544 122222323333222222122
Q ss_pred ChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHH
Q 043999 349 NVITY--NKLIDGFCDAGETDKAFRLFNQLKSNGQSP----SVVTYNVLIRA--FSKAGNSKMASDLVRE 410 (574)
Q Consensus 349 ~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~--~~~~g~~~~A~~~~~~ 410 (574)
-.... ..|+......|++++|...++++......+ +..+-...+.. ....|+...+.....+
T Consensus 615 ~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 615 LLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222 356778888999999999998886643222 22222222222 2356777776665554
No 356
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.40 E-value=88 Score=29.08 Aligned_cols=64 Identities=6% Similarity=0.075 Sum_probs=39.7
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 276 VSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR-EVACNVVTYNTLICGLCKEMRVQEAERLLD 339 (574)
Q Consensus 276 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 339 (574)
-.++..+...++..+++.+++.+-.++++..... ++.-|...|...|......|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3556666666667777777777766666655443 444466667777777666776655444443
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.29 E-value=42 Score=25.37 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=28.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 463 HGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKG 520 (574)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 520 (574)
..+.+.|++++|..+.+.. +.||...|-.|-. .+.|..+++..-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455666666666665544 3566666555433 24555555555555555554
No 358
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.26 E-value=1.7e+02 Score=32.27 Aligned_cols=116 Identities=9% Similarity=0.093 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHH--
Q 043999 247 TYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPS---LYTYNCLIHEYCNEGKV--SEGFKLFDEMRHREVACNVVTYN-- 319 (574)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~-- 319 (574)
-|..|+..|...|+.++|++++.+.....-.-| ...+--+++.+-+.+.- +-.++.-+...+..+.-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 366677777777777777777776665210001 11112233333333332 33333333332221111111110
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 043999 320 ----------TLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCD 362 (574)
Q Consensus 320 ----------~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 362 (574)
..+-.|+.....+-++.+++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223455666777777888887766555666777777777664
No 359
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.15 E-value=32 Score=27.21 Aligned_cols=41 Identities=5% Similarity=0.054 Sum_probs=19.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 442 MYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMW 482 (574)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 482 (574)
-++......+.|++.+...-+.++-+.+++..|.++|+-..
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444444555555555555555555555555554444
No 360
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.39 E-value=17 Score=23.84 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=11.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043999 534 VLCQDGKWPEAEVLLNQMLKLGLKPSVSL 562 (574)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 562 (574)
++.+.|++++|.++.+.+++. +|+..-
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 444455555555555555433 444433
No 361
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.00 E-value=94 Score=28.88 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 401 SKMASDLVREMEE-RGITPSEVTYTILIDSFVR-SD-DMEKAFEMYSLMQKS-GFSPDVYTYGVLIHGLCMKGNMKEASK 476 (574)
Q Consensus 401 ~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 476 (574)
+-+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+.+... +-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 2233455555556655543 11 222233333333322 235666677777788888888888888
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 477 LFNSMWET-KLEPNDVVYNMMIFGYCKEGNSYRALRLLG 514 (574)
Q Consensus 477 ~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 514 (574)
+|+..... ++.-|...|..+|......|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 88776654 445577778888888888887554444443
No 362
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.77 E-value=20 Score=22.87 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=20.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Q 043999 536 CQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYR 568 (574)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 568 (574)
.+.|-.+++..++++|.+.|+.-+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666666666666666666666665553
No 363
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.76 E-value=1.3e+02 Score=30.41 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 314 NVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIR 393 (574)
Q Consensus 314 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 393 (574)
|..+.-+++..+..+.+..-...+-.+|...| .+...|..++..|... ..+.-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44555556666666666666666666666543 3455556666666555 445555666666555332 3333333333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 043999 394 AFSKAGNSKMASDLVREMEERGITP-----SEVTYTILIDSFVRSDDMEKAFEMYSLMQK-SGFSPDVYTYGVLIHGLCM 467 (574)
Q Consensus 394 ~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 467 (574)
-|-+ ++.+.+..+|.+...+-++. -...|.-+... -..+.+....+...+.. .|...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55555666666555431110 01122222211 12334444444444432 1222223334444444555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 043999 468 KGNMKEASKLFNSMWET 484 (574)
Q Consensus 468 ~g~~~~A~~~~~~~~~~ 484 (574)
..++++|++++..+++.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55555555555555543
No 364
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=69.42 E-value=70 Score=30.28 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=9.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 043999 498 FGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~m~~ 518 (574)
..+...|+.+++.+++++..+
T Consensus 123 r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 123 RLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 333444555555555444443
No 365
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.29 E-value=5.5 Score=31.73 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=25.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043999 117 LKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIF 150 (574)
Q Consensus 117 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 150 (574)
-+.|.-.+|-.+|++|+++|.+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 345777889999999999999887 57777753
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.14 E-value=47 Score=25.11 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=6.0
Q ss_pred HHhcCCHHHHHHHH
Q 043999 290 YCNEGKVSEGFKLF 303 (574)
Q Consensus 290 ~~~~g~~~~A~~~~ 303 (574)
+...|++++|..+.
T Consensus 49 LmNrG~Yq~Al~l~ 62 (115)
T TIGR02508 49 LMNRGDYQSALQLG 62 (115)
T ss_pred HHccchHHHHHHhc
Confidence 33444444444433
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.59 E-value=11 Score=20.33 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=7.9
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 043999 497 IFGYCKEGNSYRALRLLGEM 516 (574)
Q Consensus 497 i~~~~~~g~~~~A~~~~~~m 516 (574)
...+...|++++|...+++.
T Consensus 8 a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 33333344444444444333
No 368
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.33 E-value=85 Score=28.94 Aligned_cols=86 Identities=9% Similarity=0.031 Sum_probs=53.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 043999 426 LIDSFVRSDDMEKAFEMYSLMQKS--GFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYC-- 501 (574)
Q Consensus 426 li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-- 501 (574)
=|++++..+++.++....-+--.. .++|.+. ..-|-.|.+.|....+.++-..-++..-.-+..-|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 367888899998887654333221 2344433 3334457888888888877776665321223334666665554
Q ss_pred ---hcCCHHHHHHHH
Q 043999 502 ---KEGNSYRALRLL 513 (574)
Q Consensus 502 ---~~g~~~~A~~~~ 513 (574)
-.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 479999998887
No 369
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.33 E-value=1e+02 Score=28.53 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHhcCChhHHHHH
Q 043999 110 ESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFN-------SLLIFVIKSCSFDKGWLF 163 (574)
Q Consensus 110 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-------~ll~~~~~~g~~~~A~~~ 163 (574)
.-+.+-..+.+++++|+..+.+.+..|+..+..+.| -+...|...|++..-...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 345566678899999999999999999887665543 355667777776554433
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.58 E-value=1e+02 Score=28.11 Aligned_cols=270 Identities=16% Similarity=0.172 Sum_probs=152.8
Q ss_pred CCCCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 043999 204 MGFSPNVVIYTSLIDG-CCKNGDIERAKMLFRKIGELGLVATQH---TYTVLICGLFKNGLQKDGFEFYEKMQLN---GV 276 (574)
Q Consensus 204 ~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~---g~ 276 (574)
.+-.||+..-|..-+. -.+..++++|+.-|++..+........ +...+|..+.+.|++++..+.+.+++.. .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3456776654433222 124568999999999998764333333 3455788899999999999999988732 11
Q ss_pred --CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--
Q 043999 277 --SPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRH-----REVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGIS-- 347 (574)
Q Consensus 277 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-- 347 (574)
.-...+.|++++......+.+--...++.-++ ++-..--.|-.-+...|...+.+....++++++...--.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 22455677787777766666665555554322 111111123345677788888888888888888764211
Q ss_pred --CC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHH-
Q 043999 348 --PN-------VITYNKLIDGFCDAGETDKAFRLFNQLKSN-GQSPSVVTYNVLIRA-----FSKAGNSKMASDLVREM- 411 (574)
Q Consensus 348 --~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m- 411 (574)
-| ...|..=|.+|....+-.+-..++++.... .--|.+... ..|+- ..+.|++++|..-|-+.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHH
Confidence 11 134666677888888877777888876542 122344333 23333 34668888876444333
Q ss_pred H---HCCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 412 E---ERGITPSEVT---YTILIDSFVRSDDMEKAFEMYSLMQKSG--FSPDVYTYGVLIHGLCMKGNMKEASKLFNSM 481 (574)
Q Consensus 412 ~---~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 481 (574)
. +.| .|...+ |..|.+.+.+.|-- -|+.-.... -.|.....+.++.+|-. +++.+-++++..-
T Consensus 259 KNYDEsG-spRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 259 KNYDESG-SPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSN 329 (440)
T ss_pred hcccccC-CcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhh
Confidence 3 223 233322 33444444444310 011001111 13555667778887754 4566655555543
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.28 E-value=1.4e+02 Score=29.28 Aligned_cols=100 Identities=14% Similarity=0.061 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CC------------------CCCHHhHHH---HHHHHHhc
Q 043999 172 ELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEM-------GF------------------SPNVVIYTS---LIDGCCKN 223 (574)
Q Consensus 172 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~------------------~p~~~~~~~---li~~~~~~ 223 (574)
|-.+.+...+...+...|+.+.|.+++++.+-. .+ .-|...|.+ .|..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 445555666666666666666666655554310 01 012222222 33445556
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHH
Q 043999 224 GDIERAKMLFRKIGELGLVATQHTYTVLICGLF-KNGLQKDGFEFYEKM 271 (574)
Q Consensus 224 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~ 271 (574)
|-+..|+++.+-+...++.-|+......|+.|+ +.++++--+++.+..
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 666666666666655554445544444554443 344444444544443
No 372
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.95 E-value=74 Score=26.14 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---C--CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043999 494 NMMIFGYCKEGNSYRALRLLGEMNEKG---L--VPNIASYSSTIGVLCQDGK-WPEAEVLLNQMLKLGLKPSVSLYNILY 567 (574)
Q Consensus 494 ~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~ 567 (574)
|.++.-....+++...+.+++.+.... + .-+...|.+++.+..+..- .--+..+|+-|.+.+.+++...|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444445554444444442210 0 1123345555555544333 333455555555555555666666555
Q ss_pred hhhh
Q 043999 568 RAKN 571 (574)
Q Consensus 568 ~~~~ 571 (574)
++..
T Consensus 123 ~~~l 126 (145)
T PF13762_consen 123 KAAL 126 (145)
T ss_pred HHHH
Confidence 5543
No 373
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.85 E-value=1.2e+02 Score=28.33 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 458 YGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMN 517 (574)
Q Consensus 458 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 517 (574)
++.....|..+|.+.+|.++.+..+..+. .+...|-.++..+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455566677777777777777665432 255556666777777777666666666554
No 374
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.68 E-value=2.1e+02 Score=31.22 Aligned_cols=226 Identities=11% Similarity=0.065 Sum_probs=121.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHHHH
Q 043999 220 CCKNGDIERAKMLFRKIGELGLVATQ-------HTYTVLIC-GLFKNGLQKDGFEFYEKMQLN----GVSPSLYTYNCLI 287 (574)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~~~~~----g~~p~~~~~~~li 287 (574)
.....++++|..+..+....-..|+. ..|+.|-. .....|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34578999999999887654322222 13444432 334578889999888777653 2234556667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcCCH--HHHHHHHHHHHHC---CCC---CChhhHH
Q 043999 288 HEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTL-----ICGLCKEMRV--QEAERLLDQMKMA---GIS---PNVITYN 354 (574)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-----i~~~~~~~~~--~~A~~~~~~m~~~---g~~---~~~~~~~ 354 (574)
.+..-.|++++|..+..+..+..-.-++..+... ...+...|+. .+....|...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7888899999999888766543222233333222 2334556633 3333333333221 011 1223344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHhHHHHHH
Q 043999 355 KLIDGFCDA-GETDKAFRLFNQLKSNGQSPSVVT--YNVLIRAFSKAGNSKMASDLVREMEERGITP----SEVTYTILI 427 (574)
Q Consensus 355 ~li~~~~~~-g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li 427 (574)
.+..++.+. +...++..-+.-.......|-... +..|+......|+.++|...+.++......+ +...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 445555441 222233333332222222222222 2356777888999999999999987643333 222222222
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 043999 428 DS--FVRSDDMEKAFEMYSL 445 (574)
Q Consensus 428 ~~--~~~~g~~~~A~~~~~~ 445 (574)
.. ....|+.+++.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 3456777777766554
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.33 E-value=1.6e+02 Score=29.81 Aligned_cols=181 Identities=11% Similarity=0.091 Sum_probs=128.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 043999 277 SPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKL 356 (574)
Q Consensus 277 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 356 (574)
..|.....+++..+..+.+..-...+..+|..-|- +-..|..++.+|..+ ..++-..+++++.+..+ .|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 34667778889999988888889999999988754 677888999999888 67788899999888743 245445556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHhHHHHHHHHH
Q 043999 357 IDGFCDAGETDKAFRLFNQLKSNGQSP-----SVVTYNVLIRAFSKAGNSKMASDLVREMEE-RGITPSEVTYTILIDSF 430 (574)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~ 430 (574)
...|-+ ++.+.+..+|.++...=++. -...|..+...- ..+.+....+..+... .|...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 655555 88899999999887652221 112455444321 3566666777666654 34444556666777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 431 VRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGL 465 (574)
Q Consensus 431 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 465 (574)
....++.+|.+++..+.++. ..|+..-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 89999999999999998876 56666655555543
No 376
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.23 E-value=1.2e+02 Score=28.34 Aligned_cols=16 Identities=25% Similarity=0.769 Sum_probs=8.7
Q ss_pred hHHHHHHHHHhcCCHH
Q 043999 282 TYNCLIHEYCNEGKVS 297 (574)
Q Consensus 282 ~~~~li~~~~~~g~~~ 297 (574)
+|.-|+.++|..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 4555555555555544
No 377
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.15 E-value=1.5e+02 Score=29.49 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=78.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHcccC-CCCCHHHHHHHHHHHHhcCC
Q 043999 114 DAHLKSRLSDQALFYFHQMLDSGVRPRSN--TFNSLLIFVIKSCSFDKGWLFFSENRCK-VELDVYSFGILIKGCCEAGD 190 (574)
Q Consensus 114 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 190 (574)
...++.|+.+ +.+.+++.|..|+.. .....+...++.|+.+....+++.-... ...+..- ...+...+..|+
T Consensus 40 ~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~ 114 (413)
T PHA02875 40 KLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKK 114 (413)
T ss_pred HHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCC
Confidence 3344556654 334445555544322 1122344555777777766666543211 0001001 122233344555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHH
Q 043999 191 LNKAFEVLNQLEEMGFSPNVVI--YTSLIDGCCKNGDIERAKMLFRKIGELGLVAT---QHTYTVLICGLFKNGLQKDGF 265 (574)
Q Consensus 191 ~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~ 265 (574)
. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+++ .|..++ ..-++. +...+..|..+
T Consensus 115 ~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~Tp-L~~A~~~g~~e--- 182 (413)
T PHA02875 115 L----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID----HKACLDIEDCCGCTP-LIIAMAKGDIA--- 182 (413)
T ss_pred H----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCH-HHHHHHcCCHH---
Confidence 4 34445555665554322 2234555566777655444443 332222 222222 23334445433
Q ss_pred HHHHHHHHCCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 043999 266 EFYEKMQLNGVSPSLYTY---NCLIHEYCNEGKVSEGFKLFDEMRHREVACNV 315 (574)
Q Consensus 266 ~~~~~~~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 315 (574)
+.+.+.+.|..++...- .+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 183 -iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 183 -ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred -HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 44445556655543321 23333334455543 33444455655543
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=65.06 E-value=1.3e+02 Score=28.77 Aligned_cols=100 Identities=7% Similarity=-0.018 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 382 SPSVVTYNVLIRAFSKAGN------------SKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKS 449 (574)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~------------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 449 (574)
+-|+.+|-.++..--..-. .+.-+.++++..+.+ +-+......++..+.+..+.++..+-++.+...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3467788777765332211 234455666666552 235555566666666666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 043999 450 GFSPDVYTYGVLIHGLCM---KGNMKEASKLFNSMWE 483 (574)
Q Consensus 450 ~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~ 483 (574)
. +-+...|...+..... .-.++....+|.+.++
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 2 3345555555554332 2345566666665543
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.86 E-value=21 Score=25.58 Aligned_cols=48 Identities=17% Similarity=0.032 Sum_probs=37.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 502 KEGNSYRALRLLGEMNEKGLVPNI--ASYSSTIGVLCQDGKWPEAEVLLN 549 (574)
Q Consensus 502 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~ 549 (574)
...+.++|+..|+..+++-..|.. .++..++.+++..|++.+++.+.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999987333322 466778889999999999887743
No 380
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.69 E-value=79 Score=28.14 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCCCC----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043999 492 VYNMMIFGYCKEGNS-------YRALRLLGEMNEKGLVP----NI-ASYSSTIGVLCQDGKWPEAEVLLNQMLKLG 555 (574)
Q Consensus 492 ~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p----~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 555 (574)
.+--+.+.|...|+. ..|.+.|++..+..-.| +. ...-.+.....+.|+.++|.++|.+++..+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344455666666653 34666666666542222 22 233345567778899999999999998654
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.60 E-value=2e+02 Score=30.72 Aligned_cols=251 Identities=10% Similarity=0.034 Sum_probs=110.7
Q ss_pred HHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 043999 148 LIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIE 227 (574)
Q Consensus 148 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 227 (574)
+..+.+.+++.+.+.++. ..+.+.........+....|+.++|.+..+.+-..|. .....++.++..+.+.|.+.
T Consensus 106 l~~La~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 106 VNELARREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCC
Confidence 344455556655555221 1244666666667777777777777666666655443 24556777777777666654
Q ss_pred HHHHHHHHH---HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCHhhHHHHHHHHH--hc
Q 043999 228 RAKMLFRKI---GELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLN---------GVSPSLYTYNCLIHEYC--NE 293 (574)
Q Consensus 228 ~A~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------g~~p~~~~~~~li~~~~--~~ 293 (574)
... ++.+| ...| +...-..+...+. .......+.+..+... .+.|+...-..++-++. ..
T Consensus 181 ~~d-~w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar 254 (644)
T PRK11619 181 PLA-YLERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVAR 254 (644)
T ss_pred HHH-HHHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHH
Confidence 433 22222 2222 2222222222210 1111111111111111 11122211111111111 23
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043999 294 GKVSEGFKLFDEMRHRE-VACN--VVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAF 370 (574)
Q Consensus 294 g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 370 (574)
.+.+.|...+....... ..+. ...+..+.......+..++|...++...... .+......-+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34466666666553332 1111 1223333333333322445555554433221 23333333444444667777766
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043999 371 RLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREME 412 (574)
Q Consensus 371 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 412 (574)
..+..|.... .-...-..-+..++...|+.++|...|+++.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666664321 1122223344555555677777777777653
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.83 E-value=21 Score=24.29 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 529 SSTIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 529 ~~l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444445555555554444443
No 383
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.92 E-value=1.7e+02 Score=29.38 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=63.4
Q ss_pred HHhcCCHHHHHHHHHHHH---HCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC-----
Q 043999 430 FVRSDDMEKAFEMYSLMQ---KSGFSPDV-----YTYGVLIHGLCMKGNMKEASKLFNSMWE-------TKLEPN----- 489 (574)
Q Consensus 430 ~~~~g~~~~A~~~~~~~~---~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~p~----- 489 (574)
+.-.|++.+|.+++...- ..|...++ ..||.|.....+.|.+.-+..+|.++++ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 345577777777664431 12212221 1234444445556666666666665553 344442
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043999 490 ------DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQ 537 (574)
Q Consensus 490 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 537 (574)
..+||. .-.|...|++-.|.+.|.+..+. +.-++..|..+..+|..
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 234543 33567889999999999888876 56688889888888864
No 384
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.85 E-value=1.7e+02 Score=29.19 Aligned_cols=16 Identities=6% Similarity=0.057 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhCCCC
Q 043999 472 KEASKLFNSMWETKLE 487 (574)
Q Consensus 472 ~~A~~~~~~~~~~~~~ 487 (574)
+++.+-++.|....+.
T Consensus 297 ~~C~~ei~~mk~~~i~ 312 (413)
T PHA02875 297 EKCIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHHHhhccC
Confidence 4566667777765444
No 385
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=62.35 E-value=1.4e+02 Score=28.00 Aligned_cols=171 Identities=20% Similarity=0.218 Sum_probs=76.7
Q ss_pred CCHhhHHHHH-HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 043999 278 PSLYTYNCLI-HEYCNEGK-VSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNK 355 (574)
Q Consensus 278 p~~~~~~~li-~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 355 (574)
|+...++.|. +.+.+.|- ..-|.++|+..... ...+.++..+.+.+.-+.-+++ +||+..+...
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~ 228 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEH 228 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHH
Confidence 3444444443 33444443 33456677665433 1235556655544444333333 3667666665
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCH----hHHHHHHHHH
Q 043999 356 LIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVR-EMEERGITPSE----VTYTILIDSF 430 (574)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~----~~~~~li~~~ 430 (574)
....+...|--+-..-.-.++.. | .--..-..|..-..+...+++.....+ +|.+.++ |+. +.|..++++-
T Consensus 229 Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsav 304 (412)
T KOG2297|consen 229 FAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAV 304 (412)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHH
Confidence 55555544432221111111100 0 000111122233334444555555544 4544443 454 3466666653
Q ss_pred HhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043999 431 VRSDDM-EKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEAS 475 (574)
Q Consensus 431 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 475 (574)
--.++- --|.+.++. ..+|..|+.++|..|+.+-.+
T Consensus 305 eWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 305 EWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHHH
Confidence 222111 112222222 346778888888888876543
No 386
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.13 E-value=3.8e+02 Score=33.08 Aligned_cols=150 Identities=11% Similarity=0.023 Sum_probs=84.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043999 180 ILIKGCCEAGDLNKAFEVLNQLEEMGF--SPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFK 257 (574)
Q Consensus 180 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 257 (574)
.+..+-.+++.+.+|...++.-..... .-....|..+...|..-+++|...-+...-.. + .....-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~-~sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----D-PSLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----C-ccHHHHHHHHHh
Confidence 555566677888888888887311100 11233455555688888888877776653111 1 123344555667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 043999 258 NGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTL-ICGLCKEMRVQEAER 336 (574)
Q Consensus 258 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~~~~~~A~~ 336 (574)
.|++..|...|+.+...+ ++...+++.++..-...|.++...-..+..... ..+....|+.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 788888888888888763 223556666666555666666666555544333 22233333332 222244555554444
Q ss_pred H
Q 043999 337 L 337 (574)
Q Consensus 337 ~ 337 (574)
.
T Consensus 1540 ~ 1540 (2382)
T KOG0890|consen 1540 Y 1540 (2382)
T ss_pred h
Confidence 4
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.00 E-value=1.3e+02 Score=27.86 Aligned_cols=89 Identities=13% Similarity=-0.011 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--
Q 043999 215 SLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCN-- 292 (574)
Q Consensus 215 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-- 292 (574)
.=|.+++..|++.+++...-+.-+.--+........-|-.|.+.+.+..+.++-..-+...-.-+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 345666666777666655444322111112223333344555666666655555544433222223335544444333
Q ss_pred ---cCCHHHHHHHH
Q 043999 293 ---EGKVSEGFKLF 303 (574)
Q Consensus 293 ---~g~~~~A~~~~ 303 (574)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 45555555544
No 388
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.75 E-value=1.5e+02 Score=27.82 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 043999 332 QEAERLLDQMKMAGISPNVITYNKLIDGFCD----AGETDKAFRLFNQLKSNGQ 381 (574)
Q Consensus 332 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~ 381 (574)
..|...|.++...+ +......+...|.. ..+.++|...|....+.|.
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 35666666666655 33344444444432 2356677777777766653
No 389
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.13 E-value=1.4e+02 Score=26.98 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=44.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043999 119 SRLSDQALFYFHQMLDSGVRPRSNT-FNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEV 197 (574)
Q Consensus 119 ~g~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 197 (574)
..+++.|+.-|.+.+.. .|+..+ |..-+-.+.+..+++.+..--.+.....+..+-....+..+......+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 34566666666666553 344422 233333444555665555444444444444444555566666666667777766
Q ss_pred HHHH
Q 043999 198 LNQL 201 (574)
Q Consensus 198 ~~~m 201 (574)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 6665
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.65 E-value=9 Score=30.58 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=18.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043999 502 KEGNSYRALRLLGEMNEKGLVPNIASYSSTIGV 534 (574)
Q Consensus 502 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 534 (574)
..|.-..|..+|++|++.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34555566777777777776666 45555543
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.64 E-value=31 Score=30.11 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 522 VPNIASYSSTIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 522 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
.|+..+|..++.++...|+.++|.++.+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555554
No 392
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.38 E-value=3e+02 Score=31.20 Aligned_cols=25 Identities=24% Similarity=0.056 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 043999 110 ESIIDAHLKSRLSDQALFYFHQMLD 134 (574)
Q Consensus 110 ~~li~~~~~~g~~~~A~~~~~~~~~ 134 (574)
-.+..+|...|...+|+..|.+...
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhh
Confidence 3444557888999999999988753
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.58 E-value=2e+02 Score=28.27 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHcccC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 143 TFNSLLIFVIKSCSFDKGWLFFSENRCK---VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 143 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
.+.-+..-|..+|+++.|++.|.+.+.- ....+..|-.+|..-...|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3455666677788888888877775443 222334455556666666777666666655544
No 394
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.51 E-value=1.9e+02 Score=28.45 Aligned_cols=58 Identities=7% Similarity=0.006 Sum_probs=38.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCChhHHHHHHHHcccC
Q 043999 112 IIDAHLKSRLSDQALFYFHQMLDSGVRPRSN--TFNSLLIFVI--KSCSFDKGWLFFSENRCK 170 (574)
Q Consensus 112 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~ll~~~~--~~g~~~~A~~~~~~~~~~ 170 (574)
.+..+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344556889999999999998876 555544 3344444443 455677888888776543
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=57.34 E-value=1.5e+02 Score=26.72 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=45.0
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 412 EERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKS------------GFSPDVYTYGVLIHGLCMKGNMKEASKLFN 479 (574)
Q Consensus 412 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 479 (574)
...++.-+.....+++ +...|++.+|+..++.-... --.|.+.....++..| ..+++++|.+++.
T Consensus 186 k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~ 262 (333)
T KOG0991|consen 186 KAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILA 262 (333)
T ss_pred HHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHH
Confidence 3344443333344433 55677777777766543321 1146666666666643 4567888888888
Q ss_pred HHHhCCCCCCH
Q 043999 480 SMWETKLEPND 490 (574)
Q Consensus 480 ~~~~~~~~p~~ 490 (574)
++.+.|..|..
T Consensus 263 ~lw~lgysp~D 273 (333)
T KOG0991|consen 263 ELWKLGYSPED 273 (333)
T ss_pred HHHHcCCCHHH
Confidence 88888777643
No 396
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.30 E-value=35 Score=23.17 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 489 NDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 489 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
|..---.+|.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444566777777777777777766654
No 397
>PHA03100 ankyrin repeat protein; Provisional
Probab=57.24 E-value=2.3e+02 Score=28.92 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=31.8
Q ss_pred HHHHHHHCCCCCCHH--hHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHH
Q 043999 197 VLNQLEEMGFSPNVV--IYTSLIDGCCKNG--DIERAKMLFRKIGELGLVATQHT--YTVLICGLFKNGLQKDGFEFYEK 270 (574)
Q Consensus 197 ~~~~m~~~g~~p~~~--~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 270 (574)
+++.+.+.|..++.. .-.+.+...++.| +.+- .+.+.+.|..++... -.+-+...+..|+.+ +.+.
T Consensus 123 iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~i----v~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~----iv~~ 194 (480)
T PHA03100 123 IVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKI----LKLLIDKGVDINAKNRYGYTPLHIAVEKGNID----VIKF 194 (480)
T ss_pred HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHH----HHHHHHCCCCcccccCCCCCHHHHHHHhCCHH----HHHH
Confidence 334444555444322 1234555555666 4333 333444444332211 122344445555433 3444
Q ss_pred HHHCCCCCC
Q 043999 271 MQLNGVSPS 279 (574)
Q Consensus 271 ~~~~g~~p~ 279 (574)
+.+.|..++
T Consensus 195 Ll~~ga~~~ 203 (480)
T PHA03100 195 LLDNGADIN 203 (480)
T ss_pred HHHcCCCcc
Confidence 444554444
No 398
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.04 E-value=8.2 Score=36.24 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=81.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 043999 430 FVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN-DVVYNMMIFGYCKEGNSYR 508 (574)
Q Consensus 430 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 508 (574)
....|.+++|++.|...+... ++....|..-.+.+.+.++...|++=++...+. .|| ..-|-.-..+-.-.|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 446688888888888888765 566667777777888888888888888877764 333 2234444444555788999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 509 ALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 509 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
|...+....+.++.+....| +=...-+.+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 99998888887766554433 33444455666666666666654
No 399
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=55.50 E-value=1.1e+02 Score=24.77 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 453 PDVYTYGVLIHGLCMKG---NMKEASKLFNSMWE-TKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 453 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
++..+--.+..++.+.. ++++.+.++++..+ ....-.....-.|.-++.+.|++++++++.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444444433 24445555555554 11111222223333445555555555555555555
No 400
>PRK10941 hypothetical protein; Provisional
Probab=55.40 E-value=1.3e+02 Score=27.85 Aligned_cols=77 Identities=10% Similarity=-0.099 Sum_probs=57.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHh
Q 043999 146 SLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMG-FSPNVVIYTSLIDGCCK 222 (574)
Q Consensus 146 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~ 222 (574)
.+-.++.+.++++.|+.+.+.+..-.|.+..-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+.....
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 456678888999999999888888778888888888888889999999988888776542 34555555555555443
No 401
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.13 E-value=1.6e+02 Score=26.50 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=16.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 043999 325 LCKEMRVQEAERLLDQMKMAGISPNVITY 353 (574)
Q Consensus 325 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 353 (574)
-...+++.+|+.+|++.....+..+..-|
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 34556677777777776665444333333
No 402
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.05 E-value=1.6e+02 Score=26.49 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=12.3
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 043999 431 VRSDDMEKAFEMYSLMQKSG 450 (574)
Q Consensus 431 ~~~g~~~~A~~~~~~~~~~~ 450 (574)
...+++.+|.++|+++.+..
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566667777776665543
No 403
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.76 E-value=1.7e+02 Score=26.36 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=64.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-----------CCCCHHHHHHHH
Q 043999 430 FVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWET-K-----------LEPNDVVYNMMI 497 (574)
Q Consensus 430 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-----------~~p~~~~~~~li 497 (574)
|.+..+..--.++.+-....+++-+..-..+++ +...|++.+|+.-++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444444444444444445555555555554 45789999999988876532 1 146667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 498 FGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVL 535 (574)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 535 (574)
..| ..+++++|.+++.++-+.|+.|.... +.+.+++
T Consensus 247 ~~~-~~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 247 QAC-LKRNIDEALKILAELWKLGYSPEDII-TTLFRVV 282 (333)
T ss_pred HHH-HhccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 765 45689999999999999998875432 3444444
No 404
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.06 E-value=92 Score=23.11 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043999 172 ELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 172 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 204 (574)
|.|......+...+...|++++|++.+-++.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445555555555555556666665555555543
No 405
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.75 E-value=26 Score=19.24 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=6.3
Q ss_pred ChHHHHHHHHHHHh
Q 043999 121 LSDQALFYFHQMLD 134 (574)
Q Consensus 121 ~~~~A~~~~~~~~~ 134 (574)
+++.|..+|+++++
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34444444444443
No 406
>PRK09857 putative transposase; Provisional
Probab=52.07 E-value=1.4e+02 Score=28.23 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=27.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043999 501 CKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPS 559 (574)
Q Consensus 501 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 559 (574)
...|+.++-.++++.+.+. .++......++..-+.+.|.-+++.++.++|+..|+.++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444444444444444433 222223333444444555555556666666666665544
No 407
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.78 E-value=61 Score=20.63 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=28.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043999 115 AHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLI 149 (574)
Q Consensus 115 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 149 (574)
...+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34578888999999999999998887777776654
No 408
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.68 E-value=1.9e+02 Score=26.86 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---
Q 043999 454 DVYTYGVLIHGLCMKGNMKEASKLFNSMWE----TKLEPNDVVY-NMMIFGYCKEGNSYRALRLLGEMNEKGLVPNI--- 525 (574)
Q Consensus 454 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 525 (574)
-...+..+...|++.++.+.+.+..++..+ .|.+.|...- .-|...|....-.++-++..+.|.++|..-+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 356777888999999999999888776654 3555554322 22333444444567888888999998754332
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 526 -ASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 526 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
.+|.-+ .+....++.+|-.++-+.+.
T Consensus 194 yK~Y~Gi--~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGI--FKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHHhhHHHHHHHHHHhc
Confidence 233222 22334678888888877763
No 409
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.68 E-value=95 Score=26.63 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=16.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~ 203 (574)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 4567778888888888887776
No 410
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.67 E-value=99 Score=23.06 Aligned_cols=23 Identities=22% Similarity=0.033 Sum_probs=13.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 043999 496 MIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 496 li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
+.......|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445556777777776666654
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.63 E-value=81 Score=27.45 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 486 LEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 486 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
..|++.+|..++.++...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357777777777777777888888777777776
No 412
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.30 E-value=96 Score=22.82 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 474 ASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEA 544 (574)
Q Consensus 474 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 544 (574)
+.++++...++|+- +......+-.+--..|+.+.|.+++..+. .| +..|..++.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 34555555555533 22222322222224567777777777776 43 23556667777766665444
No 413
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=50.55 E-value=69 Score=20.95 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=9.8
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 043999 499 GYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 499 ~~~~~g~~~~A~~~~~~m~~ 518 (574)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44455555555555555554
No 414
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.08 E-value=2e+02 Score=28.33 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=36.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEMGFSPNVV--IYTSLIDGCCK--NGDIERAKMLFRKIGEL 239 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~~~~~ 239 (574)
..+...+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445678888888888888776 444443 44445555543 45677888888776553
No 415
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=49.93 E-value=43 Score=33.29 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=21.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 395 FSKAGNSKMASDLVREMEERGITPSEVT-YTILIDSFVRSDDMEKAFEMYSLMQK 448 (574)
Q Consensus 395 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~ 448 (574)
+.+.++++.|..++.+.++. .|+-.. |..-..++.+.+++..|+.=...+++
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 33444455555555554443 222222 22222344444444444444444433
No 416
>PRK10941 hypothetical protein; Provisional
Probab=49.70 E-value=1.9e+02 Score=26.81 Aligned_cols=58 Identities=17% Similarity=0.032 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 460 VLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 460 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
.+-.+|.+.++++.|+++.+.++...+. ++.-+.--+-.|.+.|.+..|..=++..++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3334444455555555555544443211 233333344444445555555444444443
No 417
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.59 E-value=2e+02 Score=26.01 Aligned_cols=83 Identities=16% Similarity=-0.002 Sum_probs=41.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHH
Q 043999 395 FSKAGNSKMASDLVREMEERGITPSE-VTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYT-YGVLIHGLCMKGNMK 472 (574)
Q Consensus 395 ~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~ 472 (574)
|....+++.|...+.+.+.. .|+. .-|+.-+-++.+..+++.+..--...++. .|+.+. ..-+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 34444556666655555443 3443 22344444555566666555544444432 344332 223334445555566
Q ss_pred HHHHHHHHH
Q 043999 473 EASKLFNSM 481 (574)
Q Consensus 473 ~A~~~~~~~ 481 (574)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666666665
No 418
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=49.35 E-value=1.1e+02 Score=22.77 Aligned_cols=55 Identities=13% Similarity=-0.049 Sum_probs=34.0
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCh
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRP-RSNTFNSLLIFVIKSCSF 157 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~g~~ 157 (574)
|.|...--.+...+...|++++|++.+-++++..... +...-..++..+.-.|.-
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4566677778888888888888888888887664322 344455566555555543
No 419
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.84 E-value=13 Score=35.07 Aligned_cols=94 Identities=13% Similarity=-0.024 Sum_probs=66.0
Q ss_pred hcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHH
Q 043999 153 KSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVV-IYTSLIDGCCKNGDIERAKM 231 (574)
Q Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~ 231 (574)
..|.+++|++.|.......++....|..-.+.+.+.++...|++=++...+. .||.. -|-.--.+-.-.|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 5677888888888887777777788888888888888888888877777664 33322 23333333344688888888
Q ss_pred HHHHHHhCCCCCChhhH
Q 043999 232 LFRKIGELGLVATQHTY 248 (574)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ 248 (574)
.+....+.+..+....|
T Consensus 204 dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 204 DLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHhccccHHHHHH
Confidence 88888887766554444
No 420
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.20 E-value=1.3e+02 Score=23.18 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 435 DMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLG 514 (574)
Q Consensus 435 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 514 (574)
..++|..|.+-+...+. -...+--+-+..+.+.|++++| +..-. ....||...|-.|-. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45566666666555431 2222223334455666666666 11111 123456665554432 35566666666666
Q ss_pred HHHHCC
Q 043999 515 EMNEKG 520 (574)
Q Consensus 515 ~m~~~g 520 (574)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665543
No 421
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.90 E-value=1.3e+02 Score=23.21 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 178 FGILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 178 ~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
|..|+..|-..|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555666666666655544
No 422
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.24 E-value=1.2e+02 Score=22.38 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=18.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043999 222 KNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQ 261 (574)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 261 (574)
..|+.+.|.+++.++. +|.. .|...+.++...|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCch
Confidence 3455666666666665 4322 455555555555443
No 423
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=46.09 E-value=1.7e+02 Score=24.12 Aligned_cols=80 Identities=13% Similarity=0.199 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHH
Q 043999 283 YNCLIHEYCNEGKVSEGFKLFDEMRHREV-----ACNVVTYNTLICGLCKEMR-VQEAERLLDQMKMAGISPNVITYNKL 356 (574)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~~~~~~~~~l 356 (574)
.+.++.-....+++.....+++.+..... ..+...|..++.+..+..- ---+..+|..|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35566655666666666666655522100 1144455666665544444 33455555666555555566666666
Q ss_pred HHHHHh
Q 043999 357 IDGFCD 362 (574)
Q Consensus 357 i~~~~~ 362 (574)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 655544
No 424
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.86 E-value=46 Score=31.02 Aligned_cols=35 Identities=34% Similarity=0.550 Sum_probs=26.1
Q ss_pred CCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 043999 173 LDVYS-FGILIKGCCEAGDLNKAFEVLNQLEEMGFS 207 (574)
Q Consensus 173 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 207 (574)
+|..+ |+..|+.-.+.||+++|++++++..+.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34443 667888888888888888888888887765
No 425
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=45.44 E-value=3e+02 Score=27.80 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH----HHHHHHHHhcC-CHH
Q 043999 223 NGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTY----NCLIHEYCNEG-KVS 297 (574)
Q Consensus 223 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~----~~li~~~~~~g-~~~ 297 (574)
..++++|++..++..+.+-..+ -|-...+.+++.++.++|+.||..|= ...+++|+=.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~S-------------Ig~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPIS-------------IGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceE-------------EEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Confidence 4567788887777766553321 23345567788888888888876542 23344566666 466
Q ss_pred HHHHHH
Q 043999 298 EGFKLF 303 (574)
Q Consensus 298 ~A~~~~ 303 (574)
++.++.
T Consensus 274 e~~~lr 279 (545)
T TIGR01228 274 DADKLR 279 (545)
T ss_pred HHHHHH
Confidence 665544
No 426
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=45.27 E-value=4.7e+02 Score=29.04 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHC
Q 043999 368 KAFRLFNQLKSN 379 (574)
Q Consensus 368 ~A~~~~~~~~~~ 379 (574)
++.++|+.+.+.
T Consensus 1093 ~~~k~~~~l~s~ 1104 (1304)
T KOG1114|consen 1093 EAEKIYNYLKSS 1104 (1304)
T ss_pred HHHHHHHHHHHh
Confidence 355555555554
No 427
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.17 E-value=3.6e+02 Score=27.59 Aligned_cols=102 Identities=10% Similarity=-0.008 Sum_probs=63.1
Q ss_pred HHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCCc
Q 043999 26 LKAFSLFNWAS-RQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPVT 104 (574)
Q Consensus 26 ~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 104 (574)
......+.... ..|+..+......+.+.. .|..+.|..++++.+... ....+...+...+ ...
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S-----~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l---------g~~ 246 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKKG-----DGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI---------GYH 246 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----CChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh---------CCC
Confidence 33444455544 347777777665554433 788999999998876432 1123333333222 112
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNT 143 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 143 (574)
+......++......+....|+.+++++++.|..|..+.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 445566777776666666789999999999997765544
No 428
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.11 E-value=3.5e+02 Score=27.44 Aligned_cols=86 Identities=8% Similarity=-0.005 Sum_probs=48.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH--HHHHHHcccC------------CCCCHHHHHHHH
Q 043999 117 LKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKG--WLFFSENRCK------------VELDVYSFGILI 182 (574)
Q Consensus 117 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A--~~~~~~~~~~------------~~~~~~~~~~li 182 (574)
..++.++...++.+.+...|.....+.+|.-...|.+.|....- ++-++.+... ...+.+.+....
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~a 107 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFA 107 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhh
Confidence 35677888888888887777665666677777777787765422 2222222111 111233333344
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 043999 183 KGCCEAGDLNKAFEVLNQLE 202 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~ 202 (574)
.+|.....+..|+++.....
T Consensus 108 Vi~yh~~~~g~a~~~~~~lv 127 (696)
T KOG2471|consen 108 VIFYHHEENGSAMQLSSNLV 127 (696)
T ss_pred eeeeeHhhcchHHHhhhhHH
Confidence 45555566666666655544
No 429
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.42 E-value=1.7e+02 Score=25.15 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=15.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 043999 462 IHGLCMKGNMKEASKLFNSMWE 483 (574)
Q Consensus 462 i~~~~~~g~~~~A~~~~~~~~~ 483 (574)
+-.|.+.|.+++|.++++....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456777777777777777665
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.39 E-value=59 Score=30.35 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 493 YNMMIFGYCKEGNSYRALRLLGEMNEKGLV 522 (574)
Q Consensus 493 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 522 (574)
|+..|..-.+.||+++|++++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 431
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.37 E-value=7.5e+02 Score=30.85 Aligned_cols=62 Identities=11% Similarity=-0.019 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043999 350 VITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEER 414 (574)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 414 (574)
...|........+.|+++.|...+-...+.+ -...+-.....+-+.|+...|+.++++-.+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3567777777778999999988877776654 2334555667778899999999999988754
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.01 E-value=1.4e+02 Score=24.52 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=30.6
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043999 198 LNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFK 257 (574)
Q Consensus 198 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 257 (574)
.+.+.+.|++++. --..++..+.+.++.-.|.++++++.+.++..+..|...-++.+..
T Consensus 9 ~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 9 IERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 3444455555433 2344555666665666677777776666555444443333333333
No 433
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=42.71 E-value=4e+02 Score=27.50 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=71.9
Q ss_pred HHHHHhc-----cCChHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHH
Q 043999 15 NLISRMA-----KLPPLKAFSLFNWAS-RQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSL 88 (574)
Q Consensus 15 ~~~~~~~-----~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (574)
+++||-. +.+...-..++.... +.|+..+..++..+.+.- .|..+++.+++.+++..+. ...+...+
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a-----~Gs~RDalslLDq~i~~~~--~~It~~~v 237 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAA-----EGSLRDALSLLDQAIAFGE--GEITLESV 237 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHc-----CCChhhHHHHHHHHHHccC--CcccHHHH
Confidence 4555543 455566666777765 458899988877766554 7889999999999986543 33444444
Q ss_pred HHHHHhhCCCCCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 043999 89 LCHLTQLFPSSSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSN 142 (574)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 142 (574)
...+. ..+......++.+. -.++..+++..++++.+.|..|..+
T Consensus 238 ~~~lG---------~~~~~~~~~~~~~i-~~~d~~~~~~~~~~l~~~G~~~~~~ 281 (515)
T COG2812 238 RDMLG---------LTDIEKLLSLLEAI-LKGDAKEALRLINELIEEGKDPEAF 281 (515)
T ss_pred HHHhC---------CCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcCHHHH
Confidence 33321 12332333344333 4789999999999999999776543
No 434
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.68 E-value=1.5e+02 Score=31.05 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 043999 460 VLIHGLCMKGNMKEASKLFNSMWETK--LEPNDVVYNMMIFGYCKEGNSY------RALRLLGEMNEKGLVPNIASYSST 531 (574)
Q Consensus 460 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 531 (574)
+|..+|...|++..+.++++...... -+.=...||..|+...+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887642 2222456788888888888754 3445555444 34477788777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043999 532 IGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 532 ~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
+.+-...-.-.-..-++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6655443333333444444443
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.62 E-value=1.6e+02 Score=27.67 Aligned_cols=57 Identities=12% Similarity=0.394 Sum_probs=35.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 440 FEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYC 501 (574)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 501 (574)
.++|+.+.+.++.|.-+.+..+.-.+.+.=.+.+.+.+|+.+.. |..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 34666666666677766666666666666667777777777654 3333555555555
No 436
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.36 E-value=1.9e+02 Score=23.56 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 418 PSEVTYTILIDSFVRSD---DMEKAFEMYSLMQKSGFSPD--VYTYGVLIHGLCMKGNMKEASKLFNSMWET 484 (574)
Q Consensus 418 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 484 (574)
+...+--.+.-++.+.. +..+...+++.+.+.. .|+ ......|.-++.+.++++++.++.+..++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34444444444454443 3445566666666522 222 223334555667777777777777776664
No 437
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.98 E-value=2.3e+02 Score=26.64 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=23.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIG 237 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 237 (574)
....+.++..+..+.++.+. ....-...+..+...|++..|++++.+..
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33344444444444444443 22233344555556666666666665543
No 438
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.74 E-value=3.2e+02 Score=26.05 Aligned_cols=95 Identities=13% Similarity=0.206 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCH----h
Q 043999 351 ITYNKLIDGFCDAGETDKAFRLFNQLKS----NGQSPSVVTYNVLIRA-FSKAGNSKMASDLVREMEERGITPSE----V 421 (574)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~----~ 421 (574)
..+......||+-|+.+.|.+.+++..+ .|.+.|+..+..-+.. |....-+.+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3445566678888888888777665433 4556666555443332 22333334445555555565544332 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 422 TYTILIDSFVRSDDMEKAFEMYSLMQ 447 (574)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~~~~ 447 (574)
+|..+- +....++.+|-.+|-+..
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 333332 234456777777776554
No 439
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.53 E-value=1.5e+02 Score=22.12 Aligned_cols=17 Identities=29% Similarity=0.299 Sum_probs=11.2
Q ss_pred HhcCChHHHHHHHHHHH
Q 043999 117 LKSRLSDQALFYFHQML 133 (574)
Q Consensus 117 ~~~g~~~~A~~~~~~~~ 133 (574)
.+.|++..|.+.+.+..
T Consensus 9 ~~~~dy~~A~d~L~~~f 25 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYF 25 (94)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 46788888866555544
No 440
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.13 E-value=3e+02 Score=25.64 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHH---
Q 043999 385 VVTYNVLIRAFSKAGNSKMASDLVREMEE----RGITPSEVTYTILI-DSFVRSDDMEKAFEMYSLMQKSGFSPDVY--- 456 (574)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 456 (574)
...+..+..-|++.++.+.+.+..++..+ .|.+.|....-+-+ -.|....-+++-++..+.|.+.|...+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 34455566666666666666655544332 34444433221111 12223333455555566666655444322
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 457 -TYGVLIHGLCMKGNMKEASKLFNSMWE 483 (574)
Q Consensus 457 -~~~~li~~~~~~g~~~~A~~~~~~~~~ 483 (574)
+|.-+- +....++.+|-.++.+.+.
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 222221 1223456666666655543
No 441
>PRK09857 putative transposase; Provisional
Probab=40.58 E-value=2e+02 Score=27.09 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 043999 178 FGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVAT 244 (574)
Q Consensus 178 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 244 (574)
+..++....+.++.++-.++++.+.+. .++......++..-+.+.|.-+++.++..+|...|..++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344555545666666666666666554 233344455666777777777777788888877776543
No 442
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.26 E-value=1.9e+02 Score=27.23 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----------hcCCHHHH
Q 043999 230 KMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYC----------NEGKVSEG 299 (574)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~----------~~g~~~~A 299 (574)
.++++.+.+.++.|.-.++.=+.-.+.+.=.+.+.+.+++.+... ..-|..|+..|| -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356677777777777777666666677777777888888777753 222444444433 25777777
Q ss_pred HHHHHH
Q 043999 300 FKLFDE 305 (574)
Q Consensus 300 ~~~~~~ 305 (574)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 777654
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.74 E-value=1.7e+02 Score=26.67 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 043999 461 LIHGLCMKGNMKEASKLFNSM 481 (574)
Q Consensus 461 li~~~~~~g~~~~A~~~~~~~ 481 (574)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555544
No 444
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.56 E-value=2.3e+02 Score=29.62 Aligned_cols=94 Identities=10% Similarity=0.126 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSN------TFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGI 180 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 180 (574)
+.||+--+. .+..++..++++|..-++. ++.|.. ....+--+|.+..+.|.|.+++++..+..+.++.+--.
T Consensus 356 iLWn~A~~~-F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKL-FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHhhHHH-HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 344443333 3455566666666654432 122211 12223344555566666666666666555555555555
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 043999 181 LIKGCCEAGDLNKAFEVLNQLE 202 (574)
Q Consensus 181 li~~~~~~g~~~~A~~~~~~m~ 202 (574)
+..+....|.-++|+.......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 5556666666666666555443
No 445
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=39.48 E-value=6.1e+02 Score=28.70 Aligned_cols=29 Identities=14% Similarity=0.413 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Q 043999 421 VTYTILIDSFVRSD--DMEKAFEMYSLMQKS 449 (574)
Q Consensus 421 ~~~~~li~~~~~~g--~~~~A~~~~~~~~~~ 449 (574)
.-+..++.+|.+.+ ++++|+.....+.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34556677777777 777888877777754
No 446
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.49 E-value=67 Score=32.00 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=64.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChh
Q 043999 114 DAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNS-LLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLN 192 (574)
Q Consensus 114 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 192 (574)
+.+++.+.++.|+.++.+.++. .||...|-. --.++.+.+++..|+.=+..+.+..|-..-.|-.-..++.+.+++.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 3445667888888888888875 354333322 2256678888888877666666543333344444445555666777
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043999 193 KAFEVLNQLEEMGFSPNVVIYTSLIDGC 220 (574)
Q Consensus 193 ~A~~~~~~m~~~g~~p~~~~~~~li~~~ 220 (574)
+|+..|+.... +.|+..-....++-|
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 77777777665 467766666655544
No 447
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.30 E-value=5.9e+02 Score=29.10 Aligned_cols=126 Identities=11% Similarity=0.008 Sum_probs=70.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhH
Q 043999 211 VIYTSLIDGCCKNGDIERAKMLFRKIGELGLV--AT-QHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSL----YTY 283 (574)
Q Consensus 211 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~ 283 (574)
..|-.++..+-+.+-.|.+.++-...++.-.. |. ..+++.+.+-....|.+-+|...+-. .||. ...
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcL 1057 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHH
Confidence 34667777777788888887777666543111 22 23566666777777777777655433 2343 244
Q ss_pred HHHHHHHHhcCCHHH------------HHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 043999 284 NCLIHEYCNEGKVSE------------GFK-LFDEMRHREVACNVVTYNTLICGLCKEMRVQEAER-LLDQMK 342 (574)
Q Consensus 284 ~~li~~~~~~g~~~~------------A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~-~~~~m~ 342 (574)
..++-.++.+|.++. ... +++..-+..+......|+.|-..+...+++.+|-. +|+...
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyam 1130 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAM 1130 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 556666777776543 333 22222222222234456666666677777766544 444433
No 448
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.82 E-value=4.6e+02 Score=26.81 Aligned_cols=45 Identities=4% Similarity=-0.042 Sum_probs=29.2
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 437 EKAFEMYSLM-QKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWE 483 (574)
Q Consensus 437 ~~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 483 (574)
++..+.++.+ ...|+..+......++. ...|+...|+.+++++..
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 4444555544 34566666666655553 456899999999988654
No 449
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.43 E-value=59 Score=22.40 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=23.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 043999 208 PNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLF 256 (574)
Q Consensus 208 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 256 (574)
|....++.++...++..-+++++..+++..+.|.. +..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 34445555555555555555566555555555542 3444444444333
No 450
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.32 E-value=2.4e+02 Score=29.67 Aligned_cols=91 Identities=13% Similarity=0.196 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 043999 425 ILIDSFVRSDDMEKAFEMYSLMQKSG--FSPDVYTYGVLIHGLCMKGNMK------EASKLFNSMWETKLEPNDVVYNMM 496 (574)
Q Consensus 425 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 496 (574)
+|..+|...|++-.+.++++.....+ -+.-...+|..+....+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 89999999999999999999998753 1222456788888888999754 3444444443 55688888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043999 497 IFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 497 i~~~~~~g~~~~A~~~~~~m~~ 518 (574)
+.+-..--.-.-..-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765443222333334444443
No 451
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.29 E-value=6.2e+02 Score=27.85 Aligned_cols=172 Identities=15% Similarity=0.150 Sum_probs=88.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcC
Q 043999 112 IIDAHLKSRLSDQALFYFHQMLDSGVRPRS--NTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAG 189 (574)
Q Consensus 112 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 189 (574)
+-+.|...|++++|++.-+.- |+. ..+..-...+...+++..|-++|.++.+ .|..+.--+....
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~-------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS-------SFEEVALKFLEIN 430 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-------hHHHHHHHHHhcC
Confidence 345677889999999875432 331 1222233556778889999888888743 3444555555666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHH-----HHHHHHh-cCCH----HHHHHHHHHHHh---------CCCCCChhhHHH
Q 043999 190 DLNKAFEVLNQLEEMGFSPNVVIYTS-----LIDGCCK-NGDI----ERAKMLFRKIGE---------LGLVATQHTYTV 250 (574)
Q Consensus 190 ~~~~A~~~~~~m~~~g~~p~~~~~~~-----li~~~~~-~g~~----~~A~~~~~~~~~---------~~~~~~~~~~~~ 250 (574)
+.+.-..++.+=++ .++|...+-.. ++..|.. .++. +++.+-++.-.+ .....+.....+
T Consensus 431 ~~~~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nret 509 (911)
T KOG2034|consen 431 QERALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRET 509 (911)
T ss_pred CHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 66533333333222 23444333322 3333332 2322 233332222110 000112222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 251 LICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEM 306 (574)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 306 (574)
....+...|+.++...+-.-+. -|..++.-+++.+.+++|++++..-
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555666666555444333 2456777778888888888877653
No 452
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.19 E-value=2.2e+02 Score=22.69 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 473 EASKLFNSMWETKLEP-NDVVYNMMIFGYCKEGNSYRALRLLG 514 (574)
Q Consensus 473 ~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 514 (574)
.+.++|..|..+|+-- -...|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444332221 22333444444444444444444443
No 453
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.19 E-value=4.6e+02 Score=26.25 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=17.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 043999 399 GNSKMASDLVREMEERGITPSEVTYTILIDSF 430 (574)
Q Consensus 399 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 430 (574)
.+.+.|+..+..|.+.|..|....-..++.++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55666666666666666555544444443333
No 454
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.12 E-value=88 Score=17.99 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH
Q 043999 506 SYRALRLLGEMNEKGLVPNIASYS 529 (574)
Q Consensus 506 ~~~A~~~~~~m~~~g~~p~~~~~~ 529 (574)
++.|..+|++.+. +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4555555555555 235555543
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=36.02 E-value=2.9e+02 Score=24.02 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=13.0
Q ss_pred HhcCCHHHHHHHHHHHH
Q 043999 536 CQDGKWPEAEVLLNQML 552 (574)
Q Consensus 536 ~~~g~~~~A~~~~~~m~ 552 (574)
.+.|++++|.++++-|.
T Consensus 132 l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 132 LRKGSFEEAERFLKFME 148 (204)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 35688888888887775
No 456
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=35.63 E-value=6.2e+02 Score=27.63 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 043999 140 RSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCC---EAGDLNKAFEVLNQLEEMGFSPNVVIYTSL 216 (574)
Q Consensus 140 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 216 (574)
+...+..||..+.+.|++++...--..|..-.+.+...|...+.-.. ..++..++.++|++....-. ++..|.-.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e~ 189 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEEV 189 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHHH
Confidence 34455666677777777766555555555444556666555554433 33556666666666554322 22233332
Q ss_pred HHHH-------HhcCCHHHHHHHHHHHHh
Q 043999 217 IDGC-------CKNGDIERAKMLFRKIGE 238 (574)
Q Consensus 217 i~~~-------~~~g~~~~A~~~~~~~~~ 238 (574)
++-+ -+.++++....+|.+.++
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHHh
Confidence 2222 234556666666666544
No 457
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.48 E-value=3.6e+02 Score=24.88 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=16.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHH
Q 043999 279 SLYTYNCLIHEYCNEGKVSEGFKLF 303 (574)
Q Consensus 279 ~~~~~~~li~~~~~~g~~~~A~~~~ 303 (574)
|+.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5566677777778888877777655
No 458
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=34.99 E-value=66 Score=22.89 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=25.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043999 501 CKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDG 539 (574)
Q Consensus 501 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 539 (574)
...|+.+++.+++++..+.|..|.......+.-+..+.|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 346777888888888887777776666555665555544
No 459
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=34.77 E-value=4.9e+02 Score=26.25 Aligned_cols=120 Identities=6% Similarity=0.006 Sum_probs=66.6
Q ss_pred hcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043999 118 KSRLSDQALF-YFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFE 196 (574)
Q Consensus 118 ~~g~~~~A~~-~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 196 (574)
..|+.-.|-+ +|.-+....-.|+....- -..+...|+++.+...+............+..++++...+.|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4455555543 333333322233333222 2334566777777777766555444555666777777777777777777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043999 197 VLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELG 240 (574)
Q Consensus 197 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 240 (574)
.-+-|....++ +...........-..|-+|++...++++...+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77777765554 33333322333334566777777777765544
No 460
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.66 E-value=6.2e+02 Score=27.37 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=51.9
Q ss_pred HHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----------CCHHHHHHHHHHHH
Q 043999 436 MEKAFEMYSLM-QKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETK---LE----------PNDVVYNMMIFGYC 501 (574)
Q Consensus 436 ~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----------p~~~~~~~li~~~~ 501 (574)
.++....+... .+.|+.-+......++... .|++..++.+++++...+ +. .+......++.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 34555555544 4457777777776666543 699999999998876532 11 11222333444433
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC
Q 043999 502 KEGNSYRALRLLGEMNEKGLVP 523 (574)
Q Consensus 502 ~~g~~~~A~~~~~~m~~~g~~p 523 (574)
.++...++.+++++.+.|+.+
T Consensus 258 -~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCCH
Confidence 477777888888887776543
No 461
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.33 E-value=2.2e+02 Score=22.04 Aligned_cols=13 Identities=8% Similarity=0.077 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 043999 226 IERAKMLFRKIGE 238 (574)
Q Consensus 226 ~~~A~~~~~~~~~ 238 (574)
.++|..+.+.+..
T Consensus 22 H~EA~tIa~wL~~ 34 (116)
T PF09477_consen 22 HQEANTIADWLEQ 34 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 462
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.23 E-value=2.2e+02 Score=22.02 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 247 TYTVLICGLFKNGLQKDGFEFYEKMQL 273 (574)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 273 (574)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366666666777777777777766655
No 463
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=34.15 E-value=5.8e+02 Score=26.87 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 043999 384 SVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMY 443 (574)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 443 (574)
+...-..++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+..+.+.|+...+..+-
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~ 461 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIA 461 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHH
Confidence 334444555556666666665555554433211 1122334444444444444433333
No 464
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.96 E-value=4.3e+02 Score=25.31 Aligned_cols=99 Identities=10% Similarity=0.018 Sum_probs=68.1
Q ss_pred CCChhhHHHHHHHHHhcCC------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043999 347 SPNVITYNKLIDGFCDAGE------------TDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEER 414 (574)
Q Consensus 347 ~~~~~~~~~li~~~~~~g~------------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 414 (574)
|-|+.+|-.++..--+.-. .+.-+.+++++.+.+. .+...+..++..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5678888888865433221 3455678888887743 46777788888888888999999999999887
Q ss_pred CCCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 043999 415 GITPSEVTYTILIDSFVR---SDDMEKAFEMYSLMQ 447 (574)
Q Consensus 415 ~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~ 447 (574)
.. -+...|...++.... .-.+++...+|.+..
T Consensus 95 ~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 NP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 32 266777777765433 234666666665544
No 465
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.89 E-value=2.2e+02 Score=21.92 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=7.5
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 043999 463 HGLCMKGNMKEASKLFNS 480 (574)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~ 480 (574)
..|...|+.++|...+.+
T Consensus 10 ~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 10 MEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHH
Confidence 334444444444444444
No 466
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.86 E-value=5.7e+02 Score=26.43 Aligned_cols=101 Identities=15% Similarity=0.215 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHhhCCCCCCC
Q 043999 25 PLKAFSLFNWAS-RQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRI-TSSSFTPRSLLCHLTQLFPSSSNP 102 (574)
Q Consensus 25 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~ 102 (574)
+.+....+.... +.|+..+......+.... .|+...|...+.+++.... .....+...+-..+ +
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s-----~GslR~al~~Ldkai~~~~~~~~~It~~~V~~ll---------g 254 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYKS-----EGSARDAVSILDQAASMSAKSDNIISPQVINQML---------G 254 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----CCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHH---------C
Confidence 344444554433 347777777665555432 6888999888888754221 11123332222221 1
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR 140 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 140 (574)
..+......|+.+.. .|+..+|+.+++++...|..|.
T Consensus 255 ~~~~~~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 255 LVDSSVIIEFVEYII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred CCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 123333445566554 5899999999999999886654
No 467
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.85 E-value=5.8e+02 Score=26.45 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=58.9
Q ss_pred hHHHHHHHHHH-hhCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCC
Q 043999 25 PLKAFSLFNWA-SRQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPV 103 (574)
Q Consensus 25 ~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 103 (574)
+......+.+. .+.|+..+......+++.. .|+...|..++.+.+.-+ ....+...+...+ ..
T Consensus 180 ~~~i~~~l~~il~~egi~~~~~al~~ia~~s-----~GslR~al~lLdq~ia~~--~~~It~~~V~~~l---------g~ 243 (509)
T PRK14958 180 PLQIAAHCQHLLKEENVEFENAALDLLARAA-----NGSVRDALSLLDQSIAYG--NGKVLIADVKTML---------GT 243 (509)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----CCcHHHHHHHHHHHHhcC--CCCcCHHHHHHHH---------CC
Confidence 33333344433 3457777766655554433 688889988888776432 2223333333222 12
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR 140 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 140 (574)
.+......|+.+.. .|+.+.++.+++++.+.|..|.
T Consensus 244 ~~~~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 244 IEPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 33344455666554 5889999999999999987654
No 468
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.80 E-value=3.9e+02 Score=24.40 Aligned_cols=94 Identities=13% Similarity=-0.007 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC------CCCCCHHHHHHH-----------HHHHHhcCChhHHHHHHHHcccCCC
Q 043999 110 ESIIDAHLKSRLSDQALFYFHQMLDS------GVRPRSNTFNSL-----------LIFVIKSCSFDKGWLFFSENRCKVE 172 (574)
Q Consensus 110 ~~li~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~~~~~l-----------l~~~~~~g~~~~A~~~~~~~~~~~~ 172 (574)
..=.+-+.+.|++.+|..-|++.+-. .-.|...-|-.| -+++.+.|++-++++...++....+
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 33445567788888888877765421 113333333221 1334445566666666666665556
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 173 LDVYSFGILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 173 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
.|+-+|-.-.++.+..=+.++|..=|...++
T Consensus 262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred chHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 6666666666666655566666666665555
No 469
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.22 E-value=2.4e+02 Score=25.77 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 425 ILIDSFVRSDDMEKAFEMYSLMQK----SG-FSPDVYTYGVLIHGLCMKGNMKEASKLFNSM 481 (574)
Q Consensus 425 ~li~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 481 (574)
.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455667778888888888877632 11 1223344555666666777776666655444
No 470
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.75 E-value=6.9e+02 Score=27.03 Aligned_cols=109 Identities=11% Similarity=0.116 Sum_probs=64.5
Q ss_pred HHHHHhcc-----CChHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHH
Q 043999 15 NLISRMAK-----LPPLKAFSLFNWAS-RQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSL 88 (574)
Q Consensus 15 ~~~~~~~~-----~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (574)
++++|... .........+.+.. +.|+..+......+++.. .|+...+..++.+++..+ ....+...+
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A-----~GslRdAlnLLDqaia~g--~g~It~e~V 237 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA-----AGSMRDALSLLDQAIALG--SGKVAENDV 237 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-----CCCHHHHHHHHHHHHHhc--CCCcCHHHH
Confidence 44555543 22334444444433 347777777666665544 688999999988876532 122333222
Q ss_pred HHHHHhhCCCCCCCCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 043999 89 LCHLTQLFPSSSNPVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR 140 (574)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 140 (574)
...+. ..+......|+.++.+ ++...++.+++++.+.|+.+.
T Consensus 238 ~~lLG---------~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 238 RQMIG---------AVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHc---------ccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 22221 1233345666776654 889999999999999886543
No 471
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.63 E-value=4.7e+02 Score=25.01 Aligned_cols=98 Identities=21% Similarity=0.185 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHhHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCH----
Q 043999 385 VVTYNVLIRAFSKAGNSKMASDLVREMEE----RGITPSEVTYTILIDSF-VRSDDMEKAFEMYSLMQKSGFSPDV---- 455 (574)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~---- 455 (574)
...+.....-||+.|+.+.|.+.+++-.+ .|.+.|...+..-+..+ ....-+.+-.+..+.+.+.|-..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34556667789999999999988877543 46777776655544432 2333344555555556666655543
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 456 YTYGVLIHGLCMKGNMKEASKLFNSMWET 484 (574)
Q Consensus 456 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 484 (574)
.+|..+- +....++.+|-.+|-+.+..
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 3444443 33456799999999887653
No 472
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=31.28 E-value=8.1e+02 Score=27.68 Aligned_cols=390 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhH
Q 043999 114 DAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNK 193 (574)
Q Consensus 114 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 193 (574)
+++.....++.|+..|++...+ ++--...+. +++...+.++++..+...| ..+++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------~~~~~ 537 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRES-FPGRKEGYE---------AQFRLGITLLEKASEQGDP---------------RDFTQ 537 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc-CCCcccchH---------HHHHhhHHHHHHHHhcCCh---------------HHHHH
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 194 AFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQL 273 (574)
Q Consensus 194 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 273 (574)
|+.-|+.+... .--+--|---.-.|-+.|++++-++-+.-..++-........- +-.-..++.+....
T Consensus 538 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 605 (932)
T PRK13184 538 ALSEFSYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL----------RDHLVYRLHESLYK 605 (932)
T ss_pred HHHHHHHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH----------HHHHHHHHHHHHHH
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHHCC
Q 043999 274 NGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLL--------DQMKMAG 345 (574)
Q Consensus 274 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~--------~~m~~~g 345 (574)
+ ......+..++-..+-......-.+-|-+.......|...++--..-.-.+..+++--+..+ +-.....
T Consensus 606 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (932)
T PRK13184 606 H--RREALVFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAW 683 (932)
T ss_pred H--HHHHHHHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHh
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHhcCChHHHHHHHHHHH
Q 043999 346 ISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVL-------------IRAFSKAGNSKMASDLVREME 412 (574)
Q Consensus 346 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------------i~~~~~~g~~~~A~~~~~~m~ 412 (574)
..+|..+.....-..+..|.++-+.+..+.+.+. +..-..+-+.. +.++.....++++.+.+....
T Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (932)
T PRK13184 684 DLRDYRALADIFYVACDLGNWEFFSQFSDILAEV-SDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTD 762 (932)
T ss_pred hcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCC
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC
Q 043999 413 ERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDV--YTYGVLIHGLCMKGNMKEASKLFNSMWET-KLEPN 489 (574)
Q Consensus 413 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~ 489 (574)
..-+ ...+..++.-..-.++.+....+.+.+.+.-.+... .....-|.+|.-..++++|-+++...... ...-.
T Consensus 763 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (932)
T PRK13184 763 PTLI---LYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEY 839 (932)
T ss_pred HHHH---HHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhcccc
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 490 DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQ 550 (574)
Q Consensus 490 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 550 (574)
...+-....-+.-.++-+-|...|....+.-+-|. ......+.-.|..++...++++
T Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 896 (932)
T PRK13184 840 SEAFVLYGCYLALTEDREAAKAHFSGCREDALFPR----SLDGDIFDYLGKISDNLSWWEK 896 (932)
T ss_pred chHHHHHHHHHHhcCchhHHHHHHhhccccccCcc----hhhccccchhccccccccHHHH
No 473
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.26 E-value=2.5e+02 Score=23.09 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=29.3
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 043999 235 KIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEG 294 (574)
Q Consensus 235 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 294 (574)
.+.+.|+.++. --..++..+.+.+..-.|.++++++.+.+...+..|...-++.+...|
T Consensus 11 ~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444544322 233445555555555666666666666554444444444444444444
No 474
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.17 E-value=4e+02 Score=27.52 Aligned_cols=24 Identities=13% Similarity=-0.083 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQ 131 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~ 131 (574)
+-..+-..|.-.|++++|+++--+
T Consensus 61 aaL~~SKvYy~LgeY~~Ai~yAL~ 84 (926)
T COG5116 61 AALCLSKVYYVLGEYQQAIEYALR 84 (926)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHh
Confidence 334455777778888888776443
No 475
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.06 E-value=3.9e+02 Score=23.96 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=52.4
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 043999 417 TPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSP---DVYTY--GVLIHGLCMKGNMKEASKLFNSMWETKLEPNDV 491 (574)
Q Consensus 417 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 491 (574)
.++..-++.|+--|.-...+.+|...|.. +.|+.| |..++ ..-|......|++++|++..++.-..-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 44555566665555555555555555543 333443 33332 345566778888888888877764332232332
Q ss_pred HHHHHHH----HHHhcCCHHHHHHHHHHHH
Q 043999 492 VYNMMIF----GYCKEGNSYRALRLLGEMN 517 (574)
Q Consensus 492 ~~~~li~----~~~~~g~~~~A~~~~~~m~ 517 (574)
.+-.|.. =..+.|..++|+++++.=.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 2222211 1345677777777665543
No 476
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=30.92 E-value=98 Score=27.66 Aligned_cols=51 Identities=12% Similarity=-0.002 Sum_probs=26.6
Q ss_pred hcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 153 KSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
+.++.+.|.+++.+.....+.....|-.+...--+.|+++.|.+.+++..+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 444555555555555444444455555555555555555555555555554
No 477
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.88 E-value=2.5e+02 Score=21.60 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=9.4
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 043999 286 LIHEYCNEGKVSEGFKLFDE 305 (574)
Q Consensus 286 li~~~~~~g~~~~A~~~~~~ 305 (574)
++..|...|+.++|...+.+
T Consensus 8 ~l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHH
Confidence 34444445555555555544
No 478
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.83 E-value=1.4e+02 Score=23.25 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=36.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043999 111 SIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFD 158 (574)
Q Consensus 111 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~ 158 (574)
.++..+...+.+-.|-++++++.+.+...+..|.-..|..+.+.|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355566666777788999999988876677777777788888877654
No 479
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.34 E-value=4.3e+02 Score=25.34 Aligned_cols=95 Identities=16% Similarity=0.086 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 043999 422 TYTILIDSFVRSDDMEKAFEMYSLMQKSGF-SPD--VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN-DVVYNMMI 497 (574)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li 497 (574)
+|--=.+-|.+.+++..|...|.+-++... .|| .+.|+.-..+-...|++..|+.=....+.. .|+ ...|.-=.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhhh
Confidence 344455566777777777777776655432 222 344555555555667777777666666553 333 33444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 043999 498 FGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~m~~ 518 (574)
.++....++++|..+.++..+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 455566666666666665543
No 480
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.93 E-value=1.4e+02 Score=21.47 Aligned_cols=6 Identities=33% Similarity=0.822 Sum_probs=2.4
Q ss_pred HHhcCC
Q 043999 220 CCKNGD 225 (574)
Q Consensus 220 ~~~~g~ 225 (574)
.+..|+
T Consensus 33 A~~~~~ 38 (89)
T PF12796_consen 33 AAENGN 38 (89)
T ss_dssp HHHTTT
T ss_pred HHHcCC
Confidence 334444
No 481
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.61 E-value=1.1e+02 Score=21.12 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=21.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 349 NVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAF 395 (574)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 395 (574)
....++.+++.+++..-.++++..+.++...|. -+..+|..-++.+
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 334445555555555555555555555555443 2344444333333
No 482
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.08 E-value=3.1e+02 Score=27.19 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------------hhHHHHHHHHHhcCCHHHHHHHHHHH-
Q 043999 243 ATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSL---------------YTYNCLIHEYCNEGKVSEGFKLFDEM- 306 (574)
Q Consensus 243 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m- 306 (574)
|+......+++.+...-+-.+..+.++.....+.+.+. .+...|++.++-.|++..|+++++.+
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred ------HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 307 ------RHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMK 342 (574)
Q Consensus 307 ------~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 342 (574)
..+-+...+.++.-+.-+|...+++.+|.+.|....
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.93 E-value=3.9e+02 Score=23.29 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=9.7
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 043999 219 GCCKNGDIERAKMLFRKI 236 (574)
Q Consensus 219 ~~~~~g~~~~A~~~~~~~ 236 (574)
.....|++++|.+-++++
T Consensus 38 ~~~H~~~~eeA~~~l~~a 55 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKA 55 (204)
T ss_pred HHHHhccHHHHHHHHHHH
Confidence 344455566665555554
No 484
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.87 E-value=4.4e+02 Score=23.88 Aligned_cols=40 Identities=15% Similarity=-0.021 Sum_probs=18.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 043999 251 LICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEY 290 (574)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 290 (574)
++....+.|+++++.+.++++...+...+..--+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444455555555555555555554444443334333333
No 485
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=28.14 E-value=6e+02 Score=25.19 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 043999 383 PSVVTYNVLIRAFSK---AGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDD-----MEKAFEMYSLMQKSGF 451 (574)
Q Consensus 383 ~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~ 451 (574)
.+-..+.-+++++.| -.+++.|+..+-+|++.|-.|....-..++-++-.-|. ..-|...++.....|.
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~ 320 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGS 320 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCC
Confidence 344455556666654 35778888888888888876666666666555544443 2334445555555554
No 486
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.95 E-value=2.5e+02 Score=20.68 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 511 RLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 511 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
++|+-....|+..|+.+|..+++.+.-.=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6677777777777777777777777666666666777777763
No 487
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.86 E-value=8.5e+02 Score=26.98 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043999 528 YSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSV 560 (574)
Q Consensus 528 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 560 (574)
..+.++.+.+.+++..|..+..++++.+-.|+.
T Consensus 1087 lrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1087 LRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 344455555666666666666666555544443
No 488
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.86 E-value=4.8e+02 Score=23.64 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=11.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 043999 500 YCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 500 ~~~~g~~~~A~~~~~~m~~ 518 (574)
|-..|+.++|+++.++..+
T Consensus 179 yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 179 YEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHTSS-HHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHH
Confidence 3446777777777666544
No 489
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=26.31 E-value=1.5e+02 Score=23.28 Aligned_cols=50 Identities=14% Similarity=0.027 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFD 158 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~ 158 (574)
-..++..+...+.+-.|.++++.+.+.|...+..|.-.-|..+.+.|-+.
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 45667777777778899999999998887777777666777777777544
No 490
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=26.15 E-value=6e+02 Score=24.47 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=11.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043999 532 IGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 532 ~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
.+.+.+.|+.++|..-|++.+.
T Consensus 372 adlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 372 ADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 3444555555555555555553
No 491
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.06 E-value=7.1e+02 Score=25.35 Aligned_cols=398 Identities=11% Similarity=0.092 Sum_probs=198.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCH--HHHHHHHHH-HHhcCChhHHHHHHHHcccC-------CCCCHHHHHHHHHHHHhcC-
Q 043999 121 LSDQALFYFHQMLDSGVRPRS--NTFNSLLIF-VIKSCSFDKGWLFFSENRCK-------VELDVYSFGILIKGCCEAG- 189 (574)
Q Consensus 121 ~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g- 189 (574)
+...+++..+......++--. .|.-.+... +.-..+++.|...+++.-.. ....-.++..|...|+...
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~ 103 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ 103 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence 445566655555443211111 122222222 33456777777666653221 1222346777777787766
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH------HHhc
Q 043999 190 DLNKAFEVLNQLEEMGFSPNVVIY-----TSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICG------LFKN 258 (574)
Q Consensus 190 ~~~~A~~~~~~m~~~g~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~------~~~~ 258 (574)
.+..+..++++..+.. .+...| ..|+....-..|+..|.+++.--.+. -.+-...|..++.. ....
T Consensus 104 s~~~~KalLrkaiels--q~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me 180 (629)
T KOG2300|consen 104 SFPPAKALLRKAIELS--QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIME 180 (629)
T ss_pred CCchHHHHHHHHHHHh--cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhC
Confidence 7888888888877632 122222 33566667778888888874322111 11112223222211 1222
Q ss_pred CC---HHHHHHHHHHHHHCCCCCCHhhH--------HHHHHHHHhcCCHHHHHHHHHHHHhC---CC------------C
Q 043999 259 GL---QKDGFEFYEKMQLNGVSPSLYTY--------NCLIHEYCNEGKVSEGFKLFDEMRHR---EV------------A 312 (574)
Q Consensus 259 g~---~~~a~~~~~~~~~~g~~p~~~~~--------~~li~~~~~~g~~~~A~~~~~~m~~~---~~------------~ 312 (574)
.+ +..+......+.+. ..+|..-- +.=+..|.-.|+...+...++++.+. +. .
T Consensus 181 ~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgs 259 (629)
T KOG2300|consen 181 RDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGS 259 (629)
T ss_pred ccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCC
Confidence 23 33444444555543 34453321 22234456678777777766665432 11 1
Q ss_pred CCHHHHHHH----HHHH---------HhcCCHHHHHHHHHHHHHC----CCCC-ChhhHH--------HHHHHHHhcCCH
Q 043999 313 CNVVTYNTL----ICGL---------CKEMRVQEAERLLDQMKMA----GISP-NVITYN--------KLIDGFCDAGET 366 (574)
Q Consensus 313 ~~~~~~~~l----i~~~---------~~~~~~~~A~~~~~~m~~~----g~~~-~~~~~~--------~li~~~~~~g~~ 366 (574)
|.+..+.-+ |.++ ...|-+++|.++-++++.. ...+ ....++ .++-+=.-.|++
T Consensus 260 ps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~ 339 (629)
T KOG2300|consen 260 PSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDY 339 (629)
T ss_pred CChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 111111111 1111 1234455555544443321 0011 222222 122222346899
Q ss_pred HHHHHHHHHHHHCC-CCCC--HH-----HHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHhcCC
Q 043999 367 DKAFRLFNQLKSNG-QSPS--VV-----TYNVLIRA-FSKAGNSKMASDLVREMEERGITPSEVTYT--ILIDSFVRSDD 435 (574)
Q Consensus 367 ~~A~~~~~~~~~~g-~~~~--~~-----~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~ 435 (574)
.+|++-..+|.+.- -.|. .. ....++.. ++..+.++.|..-|....+.--.-|...+. .+.-.|.+.|+
T Consensus 340 ~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~ 419 (629)
T KOG2300|consen 340 VEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD 419 (629)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc
Confidence 99999888887531 1233 11 12233333 346688999999988877653333443332 34456888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH--------HHHH--HHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHH
Q 043999 436 MEKAFEMYSLMQKSGFSPDVYTYGV--------LIHG--LCMKGNMKEASKLFNSMWETKLEPN-----DVVYNMMIFGY 500 (574)
Q Consensus 436 ~~~A~~~~~~~~~~~~~~~~~~~~~--------li~~--~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~ 500 (574)
.+.-.++++.+- +++..++.+ ++.+ ..+.+++.||..++.+.++..-.-| .-....|...+
T Consensus 420 ~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~ 495 (629)
T KOG2300|consen 420 AEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVF 495 (629)
T ss_pred HHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Confidence 777666666543 332222211 1122 2468999999999999876421111 11223344556
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCHH
Q 043999 501 CKEGNSYRALRLLGEMNEK-GLVPNIA 526 (574)
Q Consensus 501 ~~~g~~~~A~~~~~~m~~~-g~~p~~~ 526 (574)
...|+..++.+...-..+. .-.||..
T Consensus 496 lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 496 LSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHhcchHHHHhccchHHHHHhcCCCch
Confidence 6788888888776654431 1245653
No 492
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.97 E-value=4e+02 Score=22.61 Aligned_cols=44 Identities=16% Similarity=-0.002 Sum_probs=21.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043999 216 LIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNG 259 (574)
Q Consensus 216 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 259 (574)
++..+...++.-.|.++++++.+.+...+..|...-+..+.+.|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33344344444555555555555554444444444444444444
No 493
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.89 E-value=5.3e+02 Score=23.79 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 043999 172 ELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVL 251 (574)
Q Consensus 172 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 251 (574)
..|+.....+...|.+.|++.+|...|-.-. .|+...+..++..+...|...++--.. ...
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~dlfi---------------~Ra 147 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEADLFI---------------ARA 147 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--HHHHH---------------HHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcchhHHH---------------HHH
Confidence 4577888888888888888888887763221 233333333444444444433331111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043999 252 ICGLFKNGLQKDGFEFYEKMQL 273 (574)
Q Consensus 252 i~~~~~~g~~~~a~~~~~~~~~ 273 (574)
+-.|.-.++...|...+....+
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 2234556667777766655553
No 494
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=25.62 E-value=6.8e+02 Score=24.97 Aligned_cols=196 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCC-----------
Q 043999 300 FKLFDEMRHREVACNV-VTYNTLICGLCKEMRVQEAERLLDQMKMAGI--SPNVITYNKLIDGFCDAGE----------- 365 (574)
Q Consensus 300 ~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~----------- 365 (574)
...+...+.-..+||. ..|+.+.+.=.+..-.++..++.+.|....- .|-..-..++|..||+..+
T Consensus 39 ~~~W~~~L~V~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~ 118 (669)
T KOG3636|consen 39 KSDWMRLLGVSMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWIT 118 (669)
T ss_pred HHHHHHHhcccCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHH
Q ss_pred ---------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 043999 366 ---------------TDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSF 430 (574)
Q Consensus 366 ---------------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 430 (574)
+.--..+-.+.+-+++.|....|. +.+.+.+-.+++-. ..+..+.+.||..+.+.+...+
T Consensus 119 lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh-~FRLLlqYHdPelc----~~LdtkkitPd~Y~lnWf~sLF 193 (669)
T KOG3636|consen 119 LLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIFH-LFRLLLQYHDPELC----NHLDTKKITPDMYTLNWFASLF 193 (669)
T ss_pred HHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccch-HHHHHHHhcCHHHh----hhhhccccCchHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 431 VRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGL--------CMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYC 501 (574)
Q Consensus 431 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--------~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 501 (574)
+..-..+-...+|+--.+.+ .|-.+.+-++|-.- .+...-++++++++.|...----|..-+-.|...|+
T Consensus 194 as~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 194 ASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
No 495
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.56 E-value=9.3e+02 Score=26.52 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHh
Q 043999 472 KEASKLFNSMWET-KLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKG-------------LVPNIASYSSTIGVLCQ 537 (574)
Q Consensus 472 ~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~~~~~l~~~~~~ 537 (574)
++..+.++++.+. ++..+......+... ..|+...|+.++++....+ -.+|...+..++..+..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043999 538 DGKWPEAEVLLNQMLKLGLKPSVSLYNIL 566 (574)
Q Consensus 538 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 566 (574)
|+..+++.+++++...|+.+....-..+
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLSFSTALQDLA 286 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 496
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=25.17 E-value=3.5e+02 Score=21.49 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCC-HHHHHHHH----HHHHhcCCHHHHHHHHHH---HH--Hc
Q 043999 490 DVVYNMMIFGYCKEGNSYRALRLLGEMNE----KG-LVPN-IASYSSTI----GVLCQDGKWPEAEVLLNQ---ML--KL 554 (574)
Q Consensus 490 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~-~~~~~~l~----~~~~~~g~~~~A~~~~~~---m~--~~ 554 (574)
..++..|..++...|++++++.-.+..+. +| +..| ...|...+ .++-..|+.++|.+.|+. |+ ++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERK 134 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERK 134 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Confidence 34455566666667776665443333321 11 2223 34444333 356678999999888864 44 34
Q ss_pred CCCCCHH
Q 043999 555 GLKPSVS 561 (574)
Q Consensus 555 g~~p~~~ 561 (574)
|-.|...
T Consensus 135 GE~~~ke 141 (144)
T PF12968_consen 135 GEMPGKE 141 (144)
T ss_dssp S--TTHH
T ss_pred CCCcchh
Confidence 5555544
No 497
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=24.99 E-value=1.6e+02 Score=23.93 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=24.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Q 043999 534 VLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYR 568 (574)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 568 (574)
.+.+.|-+.+...++++|+++|+..+..+|+-+++
T Consensus 118 ~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 118 LAKSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 33445777777777777777777777777776654
No 498
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.74 E-value=7.9e+02 Score=25.43 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCC
Q 043999 25 PLKAFSLFNWAS-RQGLQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPV 103 (574)
Q Consensus 25 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 103 (574)
+.+....+.... +.|+..+......++... .++...+...+.+++..+ ...+...+...+ +.
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s-----~GdlR~aln~Lekl~~~~---~~It~~~V~~~l---------~~ 239 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA-----DGAMRDAESLLERLLALG---TPVTRKQVEEAL---------GL 239 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----CCCHHHHHHHHHHHHhcC---CCCCHHHHHHHH---------CC
Confidence 344444554433 457777776665555443 678888888877765431 123332222111 11
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR 140 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 140 (574)
+.......|+++. ..+++++|+..+++++..|..|.
T Consensus 240 ~~~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 240 PPQERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 2333455566665 56899999999999999885543
No 499
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.66 E-value=6.4e+02 Score=24.35 Aligned_cols=47 Identities=6% Similarity=0.185 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVI 152 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 152 (574)
+--|-.+++.....|.+++.+.+|++++..|..|-...-..++..+-
T Consensus 140 aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 140 AKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46799999999999999999999999999998887777777776654
No 500
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.63 E-value=3.1e+02 Score=21.35 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=30.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043999 111 SIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIK 153 (574)
Q Consensus 111 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 153 (574)
++|+.+.++...++|+++.+-|.+.| .-+....+.|-..+.+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVK 107 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 46677778888999999999999888 4455555555544443
Done!