Query 043999
Match_columns 574
No_of_seqs 771 out of 4074
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 18:09:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.4E-42 4.9E-47 364.7 46.4 456 102-571 80-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-39 3.9E-44 342.6 47.5 452 42-535 82-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-29 7.4E-34 249.4 48.3 363 112-483 5-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.3E-29 1.8E-33 246.6 48.1 377 150-572 8-385 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.8E-31 6.1E-36 268.8 25.9 204 334-537 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 5.1E-31 1.7E-35 265.5 24.8 188 176-363 27-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 8.9E-26 3E-30 232.2 40.2 440 106-554 6-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 5E-24 1.7E-28 215.2 40.0 329 124-484 10-358 (450)
9 2gw1_A Mitochondrial precursor 99.9 6.2E-24 2.1E-28 218.4 39.8 443 46-526 8-483 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 9.1E-24 3.1E-28 213.3 40.3 316 102-449 22-358 (450)
11 3fp2_A TPR repeat-containing p 99.9 8.9E-24 3.1E-28 218.5 39.1 434 106-554 25-491 (537)
12 3fp2_A TPR repeat-containing p 99.9 5.4E-22 1.8E-26 205.2 41.1 432 45-519 26-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 8.7E-20 3E-24 177.9 39.7 329 105-465 2-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.9E-19 6.4E-24 175.5 40.8 325 177-535 5-350 (359)
15 2xm6_A Protein corresponding t 99.9 4.1E-18 1.4E-22 173.6 51.0 363 126-520 27-433 (490)
16 2xm6_A Protein corresponding t 99.9 5.1E-18 1.7E-22 172.9 51.0 383 104-517 37-465 (490)
17 2ooe_A Cleavage stimulation fa 99.9 1.9E-18 6.5E-23 178.0 45.4 422 103-554 10-492 (530)
18 2ooe_A Cleavage stimulation fa 99.9 4.6E-18 1.6E-22 175.1 46.6 386 102-519 42-492 (530)
19 3hym_B Cell division cycle pro 99.9 4.1E-19 1.4E-23 171.0 34.6 201 208-413 20-221 (330)
20 3hym_B Cell division cycle pro 99.9 5.6E-19 1.9E-23 170.1 32.7 286 104-395 20-314 (330)
21 1fch_A Peroxisomal targeting s 99.8 2.4E-19 8.1E-24 175.7 26.0 309 219-552 34-357 (368)
22 1fch_A Peroxisomal targeting s 99.8 6.5E-19 2.2E-23 172.5 26.2 303 118-444 37-354 (368)
23 1xi4_A Clathrin heavy chain; a 99.8 1.7E-15 5.9E-20 161.7 52.1 462 30-554 969-1458(1630)
24 1xi4_A Clathrin heavy chain; a 99.8 4.3E-16 1.5E-20 166.2 46.1 381 106-545 985-1375(1630)
25 4eqf_A PEX5-related protein; a 99.8 1.3E-18 4.6E-23 170.2 24.8 235 104-343 63-309 (365)
26 4eqf_A PEX5-related protein; a 99.8 6.9E-19 2.3E-23 172.3 21.8 265 280-550 65-352 (365)
27 1b89_A Protein (clathrin heavy 99.8 1.9E-18 6.5E-23 165.8 23.0 281 118-441 15-303 (449)
28 3cv0_A Peroxisome targeting si 99.8 1.1E-17 3.8E-22 160.7 26.8 280 104-410 19-311 (327)
29 4g1t_A Interferon-induced prot 99.8 1.4E-16 4.7E-21 161.7 35.8 383 105-520 50-460 (472)
30 4g1t_A Interferon-induced prot 99.8 2.6E-16 8.9E-21 159.6 37.6 391 140-563 50-469 (472)
31 1b89_A Protein (clathrin heavy 99.8 1.6E-18 5.6E-23 166.3 19.5 354 152-555 14-386 (449)
32 3cv0_A Peroxisome targeting si 99.8 1.5E-17 5.1E-22 159.8 25.5 278 143-447 23-313 (327)
33 3mkr_A Coatomer subunit epsilo 99.8 6E-17 2E-21 152.3 27.5 256 253-526 7-269 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 6.3E-17 2.2E-21 152.1 26.7 251 114-379 7-264 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.8 3.9E-19 1.3E-23 183.8 10.7 164 172-340 124-306 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.8 9E-19 3.1E-23 181.1 12.8 137 418-559 125-265 (1134)
37 3e4b_A ALGK; tetratricopeptide 99.7 1.7E-15 6E-20 151.8 27.7 347 111-485 8-388 (452)
38 3uq3_A Heat shock protein STI1 99.7 6.8E-15 2.3E-19 135.8 26.5 225 316-554 6-236 (258)
39 3e4b_A ALGK; tetratricopeptide 99.7 2.2E-15 7.7E-20 151.0 24.1 374 147-553 9-420 (452)
40 3uq3_A Heat shock protein STI1 99.7 5.8E-15 2E-19 136.3 25.0 224 106-343 5-235 (258)
41 2pl2_A Hypothetical conserved 99.7 3E-15 1E-19 134.3 21.5 195 105-304 4-209 (217)
42 2pl2_A Hypothetical conserved 99.7 3.3E-15 1.1E-19 134.0 21.0 201 138-343 2-213 (217)
43 4e6h_A MRNA 3'-END-processing 99.7 2.1E-12 7.2E-17 133.8 43.7 439 103-570 63-584 (679)
44 4e6h_A MRNA 3'-END-processing 99.7 3.2E-12 1.1E-16 132.4 42.7 403 103-533 97-582 (679)
45 2vq2_A PILW, putative fimbrial 99.7 7.5E-14 2.6E-18 125.8 26.8 205 103-309 5-211 (225)
46 2h6f_A Protein farnesyltransfe 99.7 2.8E-14 9.6E-19 138.6 25.2 234 105-344 96-348 (382)
47 2ho1_A Type 4 fimbrial biogene 99.7 6.9E-14 2.4E-18 128.7 26.6 202 106-310 37-239 (252)
48 1ouv_A Conserved hypothetical 99.7 7.1E-13 2.4E-17 123.5 33.7 224 314-555 5-252 (273)
49 1ouv_A Conserved hypothetical 99.6 7.8E-13 2.7E-17 123.3 32.6 223 174-414 5-251 (273)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-14 4.3E-19 135.6 19.9 247 118-373 17-269 (275)
51 2h6f_A Protein farnesyltransfe 99.6 7.1E-14 2.4E-18 135.7 25.6 247 141-395 97-363 (382)
52 2q7f_A YRRB protein; TPR, prot 99.6 2E-14 6.9E-19 131.4 20.4 211 104-319 21-231 (243)
53 3u4t_A TPR repeat-containing p 99.6 1.6E-13 5.4E-18 127.9 26.7 229 322-554 10-250 (272)
54 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.4E-18 128.5 26.0 194 215-412 8-206 (272)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.4E-14 8.2E-19 133.6 20.7 245 294-548 19-269 (275)
56 2ho1_A Type 4 fimbrial biogene 99.6 2.4E-13 8.3E-18 125.0 26.9 211 351-567 38-249 (252)
57 2vq2_A PILW, putative fimbrial 99.6 3.6E-13 1.2E-17 121.3 27.1 213 350-567 8-222 (225)
58 2q7f_A YRRB protein; TPR, prot 99.6 7.6E-14 2.6E-18 127.5 20.0 200 141-344 23-222 (243)
59 3sf4_A G-protein-signaling mod 99.6 1.5E-13 5.1E-18 136.1 19.5 237 104-341 7-293 (406)
60 4a1s_A PINS, partner of inscut 99.6 1.3E-13 4.5E-18 136.9 19.0 275 248-554 51-372 (411)
61 4a1s_A PINS, partner of inscut 99.6 1.4E-13 4.8E-18 136.7 19.2 277 106-414 48-372 (411)
62 3ro2_A PINS homolog, G-protein 99.5 2.5E-13 8.4E-18 130.5 18.1 276 107-414 6-332 (338)
63 3sf4_A G-protein-signaling mod 99.5 4.7E-13 1.6E-17 132.5 20.2 121 244-365 8-142 (406)
64 3vtx_A MAMA; tetratricopeptide 99.5 2.1E-12 7E-17 112.4 21.6 167 105-274 4-170 (184)
65 2ond_A Cleavage stimulation fa 99.5 1.4E-11 4.6E-16 117.0 28.9 80 123-203 33-127 (308)
66 2ond_A Cleavage stimulation fa 99.5 1.5E-11 5E-16 116.8 28.5 219 158-379 33-270 (308)
67 3vtx_A MAMA; tetratricopeptide 99.5 3.8E-12 1.3E-16 110.8 22.3 174 384-563 4-177 (184)
68 3ro2_A PINS homolog, G-protein 99.5 9.8E-13 3.3E-17 126.3 19.3 203 247-449 85-332 (338)
69 3ulq_A Response regulator aspa 99.5 6.3E-12 2.2E-16 123.5 24.8 129 422-553 226-367 (383)
70 4abn_A Tetratricopeptide repea 99.5 1.2E-12 4.1E-17 132.1 19.4 213 158-375 85-317 (474)
71 3ulq_A Response regulator aspa 99.5 4.5E-12 1.5E-16 124.5 22.6 294 220-518 22-367 (383)
72 3nf1_A KLC 1, kinesin light ch 99.5 2.2E-13 7.4E-18 129.5 12.2 170 104-273 25-223 (311)
73 4abn_A Tetratricopeptide repea 99.4 4.8E-12 1.6E-16 127.6 20.4 211 296-513 84-315 (474)
74 3nf1_A KLC 1, kinesin light ch 99.4 1.1E-12 3.7E-17 124.7 14.2 245 280-554 27-307 (311)
75 1hz4_A MALT regulatory protein 99.4 2.4E-10 8.2E-15 111.7 29.4 235 108-342 16-280 (373)
76 1hz4_A MALT regulatory protein 99.4 2.8E-10 9.6E-15 111.2 28.3 300 247-554 16-349 (373)
77 3q15_A PSP28, response regulat 99.4 1.1E-10 3.6E-15 114.4 25.0 228 322-553 108-364 (378)
78 3as5_A MAMA; tetratricopeptide 99.4 3.6E-11 1.2E-15 104.3 19.3 165 106-273 8-172 (186)
79 3q15_A PSP28, response regulat 99.4 1.8E-10 6.1E-15 112.8 25.9 229 286-518 107-364 (378)
80 4gyw_A UDP-N-acetylglucosamine 99.4 2.7E-11 9.2E-16 127.1 20.1 168 103-273 6-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.3 1.8E-10 6.1E-15 99.8 21.4 164 142-308 9-172 (186)
82 4i17_A Hypothetical protein; T 99.3 2.3E-10 7.7E-15 103.2 22.0 202 348-563 5-216 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.3 9.8E-11 3.3E-15 122.9 20.1 165 141-308 9-173 (723)
84 4i17_A Hypothetical protein; T 99.3 4.1E-10 1.4E-14 101.5 21.1 207 104-322 5-221 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 8.6E-11 2.9E-15 109.6 14.3 156 118-273 13-197 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 1.2E-10 4.2E-15 108.5 14.7 227 327-554 13-281 (283)
87 1qqe_A Vesicular transport pro 99.2 7.4E-10 2.5E-14 104.0 19.0 129 422-552 119-267 (292)
88 2uy1_A Cleavage stimulation fa 99.2 5.8E-08 2E-12 97.7 33.9 203 333-553 197-412 (493)
89 3mv2_B Coatomer subunit epsilo 99.2 1.3E-08 4.5E-13 93.7 25.2 183 334-525 85-286 (310)
90 1qqe_A Vesicular transport pro 99.2 1.5E-09 5.1E-14 101.9 18.3 95 108-202 39-145 (292)
91 3mv2_B Coatomer subunit epsilo 99.2 1.5E-08 5.2E-13 93.2 24.2 244 113-379 20-282 (310)
92 2fo7_A Synthetic consensus TPR 99.1 2.3E-09 8E-14 87.1 16.7 130 108-239 3-132 (136)
93 3qky_A Outer membrane assembly 99.1 3.9E-09 1.3E-13 97.3 19.0 101 103-204 12-126 (261)
94 2fo7_A Synthetic consensus TPR 99.1 4.8E-09 1.6E-13 85.2 17.2 129 423-554 4-132 (136)
95 3qky_A Outer membrane assembly 99.1 3.2E-09 1.1E-13 97.9 17.4 195 139-334 13-251 (261)
96 2r5s_A Uncharacterized protein 99.1 2.8E-09 9.6E-14 91.6 15.8 163 107-272 7-171 (176)
97 3dra_A Protein farnesyltransfe 99.1 7.8E-08 2.7E-12 89.5 25.8 171 121-295 48-235 (306)
98 3urz_A Uncharacterized protein 99.1 4.6E-09 1.6E-13 93.0 16.7 94 108-203 6-116 (208)
99 3urz_A Uncharacterized protein 99.1 6.6E-09 2.2E-13 92.0 17.7 135 426-566 60-196 (208)
100 3dra_A Protein farnesyltransfe 99.1 9.7E-08 3.3E-12 88.8 26.1 233 156-392 48-300 (306)
101 2pzi_A Probable serine/threoni 99.0 2.6E-09 9E-14 112.6 15.9 171 152-327 402-580 (681)
102 2pzi_A Probable serine/threoni 99.0 2.6E-09 9E-14 112.6 15.6 173 117-295 402-583 (681)
103 2uy1_A Cleavage stimulation fa 99.0 1.5E-06 5.3E-11 87.3 35.1 357 120-518 28-412 (493)
104 3rjv_A Putative SEL1 repeat pr 99.0 5.2E-08 1.8E-12 86.4 21.5 176 369-556 5-199 (212)
105 3qou_A Protein YBBN; thioredox 99.0 1.4E-08 4.9E-13 94.8 18.6 162 142-306 118-281 (287)
106 2r5s_A Uncharacterized protein 99.0 6.4E-09 2.2E-13 89.4 14.5 161 144-307 9-171 (176)
107 3rjv_A Putative SEL1 repeat pr 99.0 4.6E-08 1.6E-12 86.8 20.4 175 194-380 5-198 (212)
108 4ga2_A E3 SUMO-protein ligase 99.0 1.2E-09 4.2E-14 91.0 9.4 143 114-259 5-148 (150)
109 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.3E-08 1.1E-12 88.7 19.1 185 106-312 4-216 (225)
110 4ga2_A E3 SUMO-protein ligase 99.0 2.1E-09 7.3E-14 89.5 9.8 121 151-273 7-128 (150)
111 2yhc_A BAMD, UPF0169 lipoprote 99.0 7.1E-08 2.4E-12 86.5 19.9 186 141-345 4-214 (225)
112 3qou_A Protein YBBN; thioredox 99.0 1.5E-08 5.1E-13 94.7 15.9 167 172-342 114-282 (287)
113 2vsy_A XCC0866; transferase, g 98.9 2.9E-08 9.9E-13 102.7 18.1 154 119-275 2-158 (568)
114 2vsy_A XCC0866; transferase, g 98.9 3.1E-08 1.1E-12 102.5 17.9 148 102-252 19-169 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 4.5E-08 1.5E-12 92.5 17.0 130 387-517 78-222 (307)
116 3q7a_A Farnesyltransferase alp 98.9 1.3E-06 4.4E-11 82.1 25.0 150 108-260 56-216 (349)
117 2ifu_A Gamma-SNAP; membrane fu 98.8 1.4E-07 4.8E-12 89.1 18.1 225 118-372 3-254 (307)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.4E-07 8.3E-12 82.1 18.4 132 106-241 6-152 (213)
119 3q7a_A Farnesyltransferase alp 98.8 2E-06 6.8E-11 80.8 24.6 237 121-379 52-331 (349)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.8E-07 1.3E-11 80.7 18.5 129 386-519 7-150 (213)
121 3u3w_A Transcriptional activat 98.8 2E-06 6.9E-11 80.5 23.4 163 391-553 81-265 (293)
122 4f3v_A ESX-1 secretion system 98.8 7.9E-08 2.7E-12 87.3 13.0 192 115-311 16-239 (282)
123 2qfc_A PLCR protein; TPR, HTH, 98.8 2E-06 6.9E-11 80.4 23.0 166 387-552 77-264 (293)
124 1a17_A Serine/threonine protei 98.7 3.3E-07 1.1E-11 77.3 15.6 130 106-237 13-144 (166)
125 1na0_A Designed protein CTPR3; 98.7 3.3E-07 1.1E-11 72.9 14.7 113 106-220 9-121 (125)
126 4gco_A Protein STI-1; structur 98.7 1.7E-07 5.9E-12 75.1 12.9 99 105-204 12-110 (126)
127 3u3w_A Transcriptional activat 98.7 3.1E-06 1.1E-10 79.1 23.4 163 356-518 81-265 (293)
128 2c2l_A CHIP, carboxy terminus 98.7 6.9E-08 2.4E-12 89.8 11.4 99 105-204 3-101 (281)
129 4gco_A Protein STI-1; structur 98.7 3.2E-07 1.1E-11 73.5 13.8 97 143-240 15-111 (126)
130 2c2l_A CHIP, carboxy terminus 98.7 7.8E-08 2.7E-12 89.4 11.5 97 141-238 4-100 (281)
131 3gyz_A Chaperone protein IPGC; 98.7 1.7E-07 5.7E-12 77.6 11.5 102 102-204 32-133 (151)
132 2lni_A Stress-induced-phosphop 98.7 4E-07 1.4E-11 73.5 13.7 120 103-224 13-132 (133)
133 2qfc_A PLCR protein; TPR, HTH, 98.7 1.1E-06 3.7E-11 82.3 18.5 164 107-271 76-263 (293)
134 1a17_A Serine/threonine protei 98.7 8.9E-07 3E-11 74.6 16.3 128 422-552 15-144 (166)
135 3gyz_A Chaperone protein IPGC; 98.7 9.2E-08 3.1E-12 79.2 9.4 102 171-274 32-133 (151)
136 3gw4_A Uncharacterized protein 98.7 2.3E-07 7.8E-12 81.4 12.4 119 117-236 3-133 (203)
137 2vyi_A SGTA protein; chaperone 98.7 4.5E-07 1.5E-11 72.8 13.3 121 104-226 10-130 (131)
138 1na0_A Designed protein CTPR3; 98.6 1E-06 3.4E-11 70.0 14.8 96 142-238 10-105 (125)
139 2lni_A Stress-induced-phosphop 98.6 7.6E-07 2.6E-11 71.8 14.2 116 140-257 15-130 (133)
140 4f3v_A ESX-1 secretion system 98.6 1.1E-06 3.9E-11 79.7 16.0 198 362-567 18-248 (282)
141 2vgx_A Chaperone SYCD; alterna 98.6 1.6E-07 5.3E-12 77.8 9.6 94 423-518 24-117 (148)
142 2e2e_A Formate-dependent nitri 98.6 3.7E-07 1.3E-11 78.2 12.4 122 117-240 21-145 (177)
143 3gw4_A Uncharacterized protein 98.6 3.5E-07 1.2E-11 80.2 12.3 120 153-272 4-134 (203)
144 2e2e_A Formate-dependent nitri 98.6 4.1E-07 1.4E-11 77.9 12.2 121 396-519 21-144 (177)
145 3dss_A Geranylgeranyl transfer 98.6 4E-05 1.4E-09 71.7 26.2 139 117-258 40-192 (331)
146 1p5q_A FKBP52, FK506-binding p 98.6 8.6E-07 3E-11 84.7 15.2 124 105-229 146-283 (336)
147 2vyi_A SGTA protein; chaperone 98.6 1.6E-06 5.5E-11 69.4 14.6 116 422-540 14-129 (131)
148 1p5q_A FKBP52, FK506-binding p 98.6 1.4E-07 4.7E-12 90.2 9.3 142 156-299 128-283 (336)
149 4gcn_A Protein STI-1; structur 98.6 9.9E-07 3.4E-11 70.7 12.8 105 457-564 10-120 (127)
150 2vgx_A Chaperone SYCD; alterna 98.6 4.2E-07 1.4E-11 75.2 10.7 98 174-273 20-117 (148)
151 3dss_A Geranylgeranyl transfer 98.6 7E-05 2.4E-09 70.0 26.7 167 153-323 41-235 (331)
152 3upv_A Heat shock protein STI1 98.5 2.2E-06 7.5E-11 68.5 13.4 98 106-204 4-101 (126)
153 2kck_A TPR repeat; tetratricop 98.5 1.4E-06 4.7E-11 67.7 11.9 101 104-205 4-107 (112)
154 3upv_A Heat shock protein STI1 98.5 3.4E-06 1.2E-10 67.4 13.9 96 457-554 6-101 (126)
155 1elw_A TPR1-domain of HOP; HOP 98.5 5.1E-06 1.8E-10 65.0 14.5 98 106-204 4-101 (118)
156 2fbn_A 70 kDa peptidylprolyl i 98.5 3.8E-07 1.3E-11 79.8 8.5 146 151-298 14-174 (198)
157 2xcb_A PCRH, regulatory protei 98.5 1.8E-06 6.2E-11 70.8 12.0 100 104-204 16-115 (142)
158 2xcb_A PCRH, regulatory protei 98.4 1.9E-06 6.6E-11 70.6 11.9 98 174-273 17-114 (142)
159 4gcn_A Protein STI-1; structur 98.4 3.5E-06 1.2E-10 67.5 13.0 104 422-528 10-119 (127)
160 3sz7_A HSC70 cochaperone (SGT) 98.4 4.5E-06 1.5E-10 70.3 14.2 101 103-204 8-108 (164)
161 1elw_A TPR1-domain of HOP; HOP 98.4 6.3E-06 2.1E-10 64.5 14.1 96 143-239 6-101 (118)
162 1elr_A TPR2A-domain of HOP; HO 98.4 1.7E-06 5.8E-11 69.4 10.4 109 106-217 4-119 (131)
163 2fbn_A 70 kDa peptidylprolyl i 98.4 4.8E-06 1.6E-10 72.7 13.7 123 106-230 38-176 (198)
164 3q49_B STIP1 homology and U bo 98.4 5.5E-06 1.9E-10 67.2 13.1 99 104-203 7-105 (137)
165 2kck_A TPR repeat; tetratricop 98.4 4.6E-06 1.6E-10 64.6 12.2 99 454-554 5-106 (112)
166 1elr_A TPR2A-domain of HOP; HO 98.4 5E-06 1.7E-10 66.5 12.4 95 423-518 7-107 (131)
167 2dba_A Smooth muscle cell asso 98.4 1.5E-05 5E-10 65.4 15.1 100 103-204 25-128 (148)
168 3sz7_A HSC70 cochaperone (SGT) 98.3 9.2E-06 3.1E-10 68.4 13.8 99 419-519 10-108 (164)
169 3q49_B STIP1 homology and U bo 98.3 1.4E-05 4.9E-10 64.7 14.2 98 419-518 8-105 (137)
170 1hxi_A PEX5, peroxisome target 98.3 4.7E-06 1.6E-10 66.1 10.3 96 108-204 19-114 (121)
171 2dba_A Smooth muscle cell asso 98.3 2.9E-05 9.8E-10 63.6 15.4 98 454-554 27-128 (148)
172 1hxi_A PEX5, peroxisome target 98.3 7.4E-06 2.5E-10 64.9 11.0 95 458-554 20-114 (121)
173 4b4t_Q 26S proteasome regulato 98.2 6.7E-05 2.3E-09 74.4 19.9 197 322-518 11-244 (434)
174 4b4t_Q 26S proteasome regulato 98.2 8.9E-05 3.1E-09 73.4 20.7 124 113-236 11-161 (434)
175 3ro3_A PINS homolog, G-protein 98.2 6.1E-06 2.1E-10 68.8 10.2 97 106-202 9-116 (164)
176 2xev_A YBGF; tetratricopeptide 98.2 3.8E-05 1.3E-09 61.3 14.0 90 427-518 9-104 (129)
177 2xev_A YBGF; tetratricopeptide 98.2 4.4E-05 1.5E-09 60.9 13.9 95 109-204 5-105 (129)
178 1wao_1 Serine/threonine protei 98.2 1.5E-06 5E-11 87.3 5.5 124 109-234 9-134 (477)
179 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 4.2E-10 66.9 10.5 131 423-553 12-157 (164)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.4E-05 8.2E-10 78.1 13.7 138 106-265 268-405 (457)
181 3k9i_A BH0479 protein; putativ 98.1 5.2E-06 1.8E-10 65.3 6.7 87 118-204 2-90 (117)
182 3rkv_A Putative peptidylprolyl 98.1 4.8E-05 1.7E-09 63.7 12.9 97 421-518 12-125 (162)
183 3rkv_A Putative peptidylprolyl 98.1 4.5E-05 1.5E-09 63.9 12.6 99 385-484 11-126 (162)
184 1wao_1 Serine/threonine protei 98.1 8.6E-06 2.9E-10 81.7 9.3 119 149-269 14-134 (477)
185 1ihg_A Cyclophilin 40; ppiase 98.1 3.2E-05 1.1E-09 74.6 12.8 138 107-265 224-361 (370)
186 3k9i_A BH0479 protein; putativ 98.1 9.2E-06 3.2E-10 63.8 7.5 84 434-518 4-89 (117)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 5.4E-05 1.9E-09 75.5 14.4 154 153-308 246-414 (457)
188 1klx_A Cysteine rich protein B 98.0 0.00016 5.6E-09 58.5 14.7 111 434-555 9-127 (138)
189 2hr2_A Hypothetical protein; a 98.0 5E-05 1.7E-09 62.1 11.4 30 107-136 12-41 (159)
190 1dce_A Protein (RAB geranylger 98.0 0.00025 8.7E-09 72.4 19.3 137 191-331 89-242 (567)
191 1ihg_A Cyclophilin 40; ppiase 98.0 5.4E-05 1.9E-09 73.0 13.4 140 385-546 223-362 (370)
192 2hr2_A Hypothetical protein; a 98.0 0.0001 3.5E-09 60.2 12.7 110 458-567 14-149 (159)
193 2if4_A ATFKBP42; FKBP-like, al 98.0 1.2E-05 4.1E-10 76.7 8.3 149 106-274 179-328 (338)
194 1dce_A Protein (RAB geranylger 98.0 0.00039 1.3E-08 71.0 18.8 176 118-297 40-243 (567)
195 2if4_A ATFKBP42; FKBP-like, al 97.9 3E-05 1E-09 74.0 9.3 152 384-559 178-331 (338)
196 2l6j_A TPR repeat-containing p 97.8 1.6E-05 5.6E-10 61.5 5.2 93 106-199 4-102 (111)
197 1na3_A Designed protein CTPR2; 97.8 0.00014 4.7E-09 53.7 9.9 83 105-188 8-90 (91)
198 1klx_A Cysteine rich protein B 97.8 0.00061 2.1E-08 55.1 13.6 16 121-136 10-25 (138)
199 2l6j_A TPR repeat-containing p 97.8 2.4E-05 8.1E-10 60.5 5.0 90 455-547 4-100 (111)
200 3n71_A Histone lysine methyltr 97.8 0.00015 5.2E-09 72.2 11.7 97 457-553 353-463 (490)
201 1zu2_A Mitochondrial import re 97.8 6.4E-05 2.2E-09 61.3 7.4 98 432-533 14-132 (158)
202 2kat_A Uncharacterized protein 97.7 0.00015 5E-09 56.5 8.4 79 124-203 3-81 (115)
203 2kat_A Uncharacterized protein 97.7 0.0002 6.8E-09 55.8 9.0 81 158-239 2-82 (115)
204 1zu2_A Mitochondrial import re 97.7 9.2E-05 3.2E-09 60.4 6.9 99 117-218 13-132 (158)
205 3n71_A Histone lysine methyltr 97.6 0.0003 1E-08 70.0 11.2 126 394-519 318-464 (490)
206 1na3_A Designed protein CTPR2; 97.5 0.0008 2.8E-08 49.3 10.3 60 458-518 12-71 (91)
207 3ma5_A Tetratricopeptide repea 97.5 0.00044 1.5E-08 52.2 8.3 66 103-169 4-69 (100)
208 3ma5_A Tetratricopeptide repea 97.2 0.0012 4.2E-08 49.7 8.2 65 173-238 5-69 (100)
209 3ly7_A Transcriptional activat 97.2 0.0085 2.9E-07 56.2 15.1 74 489-566 276-349 (372)
210 3qww_A SET and MYND domain-con 97.1 0.0032 1.1E-07 61.6 11.3 85 468-552 311-409 (433)
211 3ly7_A Transcriptional activat 97.1 0.0089 3.1E-07 56.1 13.6 135 138-274 191-339 (372)
212 3qwp_A SET and MYND domain-con 96.9 0.0068 2.3E-07 59.3 12.0 88 465-552 297-398 (429)
213 2kc7_A BFR218_protein; tetratr 96.9 0.002 6.8E-08 48.2 6.3 66 112-178 6-72 (99)
214 2kc7_A BFR218_protein; tetratr 96.8 0.0015 5.3E-08 48.8 5.0 56 149-204 8-64 (99)
215 3mkq_A Coatomer beta'-subunit; 96.7 0.11 3.8E-06 55.7 20.9 27 350-376 681-707 (814)
216 3qww_A SET and MYND domain-con 96.7 0.0063 2.1E-07 59.5 9.7 86 433-518 311-410 (433)
217 1pc2_A Mitochondria fission pr 96.6 0.028 9.4E-07 45.3 11.2 81 436-518 14-99 (152)
218 3qwp_A SET and MYND domain-con 96.6 0.0091 3.1E-07 58.4 10.1 91 428-518 295-399 (429)
219 3bee_A Putative YFRE protein; 96.6 0.016 5.6E-07 42.6 9.1 67 452-519 3-72 (93)
220 3mkq_A Coatomer beta'-subunit; 96.4 0.061 2.1E-06 57.8 16.2 98 117-237 610-708 (814)
221 3u64_A Protein TP_0956; tetrat 96.4 0.15 5.2E-06 45.8 15.6 92 191-284 179-281 (301)
222 1pc2_A Mitochondria fission pr 96.4 0.035 1.2E-06 44.7 10.4 86 471-560 14-104 (152)
223 3lvg_A Clathrin heavy chain 1; 96.3 3.8E-06 1.3E-10 80.0 -15.0 205 104-328 52-276 (624)
224 3bee_A Putative YFRE protein; 96.3 0.044 1.5E-06 40.2 9.9 46 158-203 26-71 (93)
225 1wy6_A Hypothetical protein ST 96.1 0.33 1.1E-05 37.6 16.3 137 187-345 19-155 (172)
226 3mkq_B Coatomer subunit alpha; 96.1 0.18 6E-06 41.7 13.4 43 153-200 17-59 (177)
227 3u64_A Protein TP_0956; tetrat 96.1 0.043 1.5E-06 49.3 10.5 83 436-520 179-270 (301)
228 2v5f_A Prolyl 4-hydroxylase su 95.8 0.11 3.7E-06 39.1 10.6 70 454-525 4-79 (104)
229 3mkq_B Coatomer subunit alpha; 95.7 0.73 2.5E-05 38.0 17.4 127 116-271 15-141 (177)
230 2v5f_A Prolyl 4-hydroxylase su 95.7 0.069 2.4E-06 40.2 9.0 72 106-177 5-82 (104)
231 4h7y_A Dual specificity protei 95.5 0.14 5E-06 40.5 10.0 104 102-206 9-125 (161)
232 1wy6_A Hypothetical protein ST 95.3 0.73 2.5E-05 35.7 16.3 66 490-556 91-156 (172)
233 1nzn_A CGI-135 protein, fissio 95.1 0.12 4E-06 40.0 8.3 85 472-560 18-107 (126)
234 4ady_A RPN2, 26S proteasome re 95.1 4.3 0.00015 43.2 31.4 254 289-552 383-656 (963)
235 3lvg_A Clathrin heavy chain 1; 94.9 0.00025 8.5E-09 67.8 -8.6 217 104-335 81-324 (624)
236 1nzn_A CGI-135 protein, fissio 94.7 0.17 5.9E-06 39.1 8.4 87 434-524 15-106 (126)
237 4h7y_A Dual specificity protei 94.7 0.26 8.7E-06 39.2 9.3 100 419-520 12-124 (161)
238 4gns_B Protein CSD3, chitin bi 92.9 0.46 1.6E-05 49.4 10.3 129 108-237 250-398 (754)
239 2wpv_A GET4, UPF0363 protein Y 92.4 6.4 0.00022 36.0 18.6 80 279-377 133-215 (312)
240 4b4t_P 26S proteasome regulato 92.4 8.7 0.0003 37.4 19.9 50 294-343 30-84 (445)
241 4ady_A RPN2, 26S proteasome re 92.3 14 0.00046 39.5 35.5 276 253-536 382-672 (963)
242 1v54_E Cytochrome C oxidase po 91.4 1 3.5E-05 32.8 7.4 62 470-532 25-86 (109)
243 2ff4_A Probable regulatory pro 90.9 1.1 3.8E-05 42.9 9.9 55 496-551 177-231 (388)
244 4b4t_P 26S proteasome regulato 90.8 13 0.00043 36.3 18.9 241 328-572 29-305 (445)
245 4fhn_B Nucleoporin NUP120; pro 90.1 7.7 0.00026 43.2 17.1 148 147-300 818-991 (1139)
246 4fhn_B Nucleoporin NUP120; pro 90.1 5.6 0.00019 44.3 16.0 151 179-336 816-992 (1139)
247 3o48_A Mitochondria fission 1 90.1 3.3 0.00011 32.1 9.8 72 487-560 37-111 (134)
248 2ff4_A Probable regulatory pro 89.4 1.3 4.3E-05 42.6 8.9 128 104-249 110-249 (388)
249 4gns_B Protein CSD3, chitin bi 89.4 2.2 7.6E-05 44.4 11.1 49 501-551 348-397 (754)
250 3o48_A Mitochondria fission 1 89.3 4.8 0.00016 31.2 10.1 72 452-525 37-111 (134)
251 2y69_E Cytochrome C oxidase su 87.8 2.4 8.2E-05 32.8 7.4 61 471-532 69-129 (152)
252 1v54_E Cytochrome C oxidase po 87.7 6.5 0.00022 28.7 9.2 59 508-567 28-86 (109)
253 1y8m_A FIS1; mitochondria, unk 87.5 9.1 0.00031 30.1 12.0 66 453-518 37-105 (144)
254 1y8m_A FIS1; mitochondria, unk 85.6 12 0.0004 29.5 12.7 73 487-561 36-111 (144)
255 3ffl_A Anaphase-promoting comp 85.2 3.9 0.00013 33.2 7.9 120 106-238 20-150 (167)
256 2y69_E Cytochrome C oxidase su 83.6 11 0.00038 29.1 9.2 59 509-568 72-130 (152)
257 3lpz_A GET4 (YOR164C homolog); 81.2 33 0.0011 31.5 23.1 80 349-447 135-214 (336)
258 3lpz_A GET4 (YOR164C homolog); 81.1 34 0.0012 31.5 22.4 111 144-268 38-159 (336)
259 2uwj_G Type III export protein 80.4 14 0.00049 26.8 8.3 78 435-520 21-98 (115)
260 3ffl_A Anaphase-promoting comp 80.4 4.3 0.00015 32.9 6.4 115 425-552 25-149 (167)
261 2p58_C Putative type III secre 80.0 15 0.00051 26.7 9.1 78 435-520 22-99 (116)
262 2wpv_A GET4, UPF0363 protein Y 79.4 37 0.0013 30.9 21.3 80 349-447 133-215 (312)
263 4b4t_R RPN7, 26S proteasome re 79.0 12 0.00043 36.1 10.7 97 422-518 133-236 (429)
264 1qsa_A Protein (soluble lytic 78.9 60 0.002 33.0 31.6 227 103-343 99-347 (618)
265 1zbp_A Hypothetical protein VP 78.4 4.5 0.00015 35.8 6.4 52 152-203 8-59 (273)
266 4b4t_R RPN7, 26S proteasome re 76.4 30 0.001 33.4 12.6 61 177-237 133-195 (429)
267 3txn_A 26S proteasome regulato 75.6 56 0.0019 31.0 20.5 27 281-307 20-46 (394)
268 2p58_C Putative type III secre 73.7 23 0.0008 25.7 8.2 13 290-302 50-62 (116)
269 2uwj_G Type III export protein 72.5 22 0.00075 25.8 7.4 12 290-301 49-60 (115)
270 3eu9_A Huntingtin-interacting 70.9 9.1 0.00031 33.0 6.9 47 116-166 16-64 (240)
271 1wdy_A 2-5A-dependent ribonucl 70.0 23 0.00079 31.4 9.6 11 113-123 9-19 (285)
272 3esl_A Checkpoint serine/threo 68.6 47 0.0016 27.9 10.0 53 436-488 95-148 (202)
273 3esl_A Checkpoint serine/threo 68.3 43 0.0015 28.1 9.7 57 468-524 92-149 (202)
274 1wdy_A 2-5A-dependent ribonucl 67.0 49 0.0017 29.1 11.2 48 326-373 190-239 (285)
275 3ltm_A Alpha-REP4; protein eng 63.9 64 0.0022 27.0 18.0 185 367-574 18-202 (211)
276 3eu9_A Huntingtin-interacting 61.1 18 0.00063 31.0 6.9 15 216-230 45-59 (240)
277 3eiq_C Programmed cell death p 59.7 1.1E+02 0.0036 28.6 11.8 26 317-342 56-81 (358)
278 1zbp_A Hypothetical protein VP 58.8 97 0.0033 27.4 15.0 113 429-554 6-129 (273)
279 1k1a_A B-cell lymphoma 3-encod 58.6 81 0.0028 26.8 10.7 23 185-207 16-38 (241)
280 1n11_A Ankyrin; clathrin, BAND 58.1 73 0.0025 30.4 11.3 81 148-233 18-100 (437)
281 1n11_A Ankyrin; clathrin, BAND 56.7 1.1E+02 0.0037 29.2 12.2 208 112-338 17-232 (437)
282 1k1a_A B-cell lymphoma 3-encod 56.1 66 0.0023 27.4 9.7 86 216-305 12-101 (241)
283 4b4t_S RPN3, 26S proteasome re 55.5 1.5E+02 0.0051 29.2 12.4 65 106-170 231-299 (523)
284 3kea_A K1L; tropism, ANK repea 53.9 70 0.0024 28.5 9.7 12 116-127 38-49 (285)
285 3t8k_A Uncharacterized protein 53.7 85 0.0029 25.8 9.4 26 254-279 44-69 (186)
286 3jxi_A Vanilloid receptor-rela 50.6 22 0.00075 31.2 5.6 53 184-236 11-72 (260)
287 4a1g_A Mitotic checkpoint seri 48.3 1E+02 0.0035 24.5 9.1 50 509-558 84-134 (152)
288 2d2s_A Exocyst complex compone 48.1 1.1E+02 0.0038 26.4 9.4 21 182-202 25-45 (235)
289 3kea_A K1L; tropism, ANK repea 48.0 74 0.0025 28.3 8.8 6 327-332 170-175 (285)
290 2zu6_B Programmed cell death p 47.7 1.4E+02 0.0048 27.1 10.3 27 144-170 6-32 (307)
291 3t8k_A Uncharacterized protein 47.4 1.2E+02 0.004 24.9 9.7 65 216-280 41-109 (186)
292 4a1g_A Mitotic checkpoint seri 47.3 1.1E+02 0.0036 24.4 9.7 50 474-523 84-134 (152)
293 3txn_A 26S proteasome regulato 47.2 1.9E+02 0.0065 27.3 25.8 297 245-556 19-345 (394)
294 2d2s_A Exocyst complex compone 45.6 1.3E+02 0.0045 26.0 9.4 91 425-518 23-119 (235)
295 4b4t_S RPN3, 26S proteasome re 44.4 64 0.0022 31.7 7.9 65 175-239 231-299 (523)
296 2nsz_A Programmed cell death p 43.9 1E+02 0.0035 23.6 7.7 66 457-523 9-76 (129)
297 4g8k_A 2-5A-dependent ribonucl 43.9 1.9E+02 0.0063 26.2 12.5 27 110-140 26-52 (337)
298 4gq2_M Nucleoporin NUP120; bet 41.9 3.2E+02 0.011 29.5 13.8 131 147-294 816-950 (950)
299 2wvi_A Mitotic checkpoint seri 41.0 1.4E+02 0.0048 24.0 9.4 53 473-525 78-131 (164)
300 3hra_A Ankyrin repeat family p 40.7 97 0.0033 25.4 7.9 14 220-233 79-92 (201)
301 2wvi_A Mitotic checkpoint seri 40.5 1.4E+02 0.0049 24.0 9.5 55 437-491 77-132 (164)
302 2qx5_A Nucleoporin NIC96; mRNA 40.3 3.2E+02 0.011 28.0 18.2 80 286-376 300-382 (661)
303 2r9g_A AAA ATPase, central reg 40.0 1.6E+02 0.0056 24.5 9.8 53 398-451 27-84 (204)
304 3hra_A Ankyrin repeat family p 39.7 83 0.0028 25.8 7.4 12 222-233 14-25 (201)
305 3mv2_A Coatomer subunit alpha; 39.2 2.2E+02 0.0077 25.9 10.1 50 471-520 186-237 (325)
306 3b7b_A Euchromatic histone-lys 39.0 1.1E+02 0.0039 25.8 8.3 11 113-123 15-25 (237)
307 3b7b_A Euchromatic histone-lys 36.8 1.2E+02 0.0039 25.7 8.0 22 357-378 214-235 (237)
308 2zu6_B Programmed cell death p 36.4 2.2E+02 0.0075 25.8 9.7 25 213-237 6-30 (307)
309 2ion_A PDCD4, programmed cell 36.2 89 0.003 24.8 6.3 67 457-524 11-79 (152)
310 3bge_A Predicted ATPase; struc 34.8 2E+02 0.0068 24.0 8.5 24 399-422 21-44 (201)
311 2rfa_A Transient receptor pote 34.3 1.9E+02 0.0065 24.2 9.0 23 289-311 160-182 (232)
312 1qsa_A Protein (soluble lytic 34.2 3.9E+02 0.013 27.1 38.1 338 145-514 76-437 (618)
313 2etb_A Transient receptor pote 33.8 84 0.0029 27.2 6.7 57 182-238 6-71 (256)
314 2b7e_A PRE-mRNA processing pro 33.7 28 0.00097 22.4 2.4 34 122-155 2-36 (59)
315 4aez_C MAD3, mitotic spindle c 32.6 1.5E+02 0.0052 25.3 7.4 51 473-523 132-183 (223)
316 3jxi_A Vanilloid receptor-rela 31.6 32 0.0011 30.1 3.4 28 113-140 9-36 (260)
317 2rfa_A Transient receptor pote 31.3 2.3E+02 0.0079 23.7 9.9 22 324-345 160-181 (232)
318 1ug3_A EIF4GI, eukaryotic prot 31.0 3.1E+02 0.011 25.1 10.4 25 248-272 14-38 (339)
319 3pvs_A Replication-associated 30.9 3.7E+02 0.013 25.9 12.9 140 295-450 166-325 (447)
320 2ion_A PDCD4, programmed cell 30.7 1E+02 0.0036 24.4 5.9 24 109-132 12-35 (152)
321 4gq2_M Nucleoporin NUP120; bet 30.1 5E+02 0.017 28.0 13.0 131 112-259 816-950 (950)
322 2xig_A Ferric uptake regulatio 30.0 1.9E+02 0.0066 22.7 7.5 58 201-259 18-75 (150)
323 3ctd_A Putative ATPase, AAA fa 29.9 2.5E+02 0.0086 23.6 9.0 52 399-450 49-105 (213)
324 4aez_C MAD3, mitotic spindle c 29.7 1.3E+02 0.0045 25.7 6.5 54 507-560 131-185 (223)
325 2fe3_A Peroxide operon regulat 29.7 2E+02 0.0068 22.4 7.5 58 201-259 13-70 (145)
326 4g8k_A 2-5A-dependent ribonucl 28.0 2.8E+02 0.0096 25.0 9.5 12 15-26 28-39 (337)
327 3aji_A 26S proteasome non-ATPa 28.0 1.4E+02 0.0049 25.0 7.1 13 153-165 15-27 (231)
328 2nsz_A Programmed cell death p 27.8 2E+02 0.0069 21.9 9.4 23 284-306 11-33 (129)
329 1bpo_A Protein (clathrin); cla 27.7 3.7E+02 0.013 26.0 9.8 65 210-275 361-425 (494)
330 3twr_A Tankyrase-2; ankyrin re 27.6 1.6E+02 0.0055 23.0 6.9 6 222-227 84-89 (165)
331 3eiq_C Programmed cell death p 27.6 3.7E+02 0.013 24.9 14.9 27 107-133 55-81 (358)
332 2cos_A Serine/threonine protei 26.1 64 0.0022 20.2 2.9 34 513-551 13-48 (54)
333 2xig_A Ferric uptake regulatio 25.3 2E+02 0.007 22.5 6.8 43 358-400 34-76 (150)
334 1bd8_A P19INK4D CDK4/6 inhibit 24.0 1E+02 0.0034 23.9 4.9 152 179-341 3-156 (156)
335 3ljn_A Hypothetical protein; a 24.0 3.7E+02 0.013 24.5 9.6 16 220-235 91-106 (364)
336 1mzb_A Ferric uptake regulatio 23.8 1.9E+02 0.0064 22.2 6.2 58 201-259 9-67 (136)
337 2fe3_A Peroxide operon regulat 23.7 1.9E+02 0.0064 22.6 6.2 34 366-399 37-70 (145)
338 2o03_A Probable zinc uptake re 23.6 1.3E+02 0.0045 22.9 5.3 49 110-158 14-62 (131)
339 2pnn_A Transient receptor pote 23.5 1.3E+02 0.0045 26.2 6.1 21 185-205 20-40 (273)
340 3mv2_A Coatomer subunit alpha; 23.5 4.2E+02 0.014 24.1 12.4 15 60-74 41-55 (325)
341 2etb_A Transient receptor pote 23.4 88 0.003 27.0 4.8 28 113-140 6-33 (256)
342 3bu8_A Telomeric repeat-bindin 23.0 3.5E+02 0.012 22.9 11.4 20 121-140 34-53 (235)
343 2f6m_A Suppressor protein STP2 22.9 1.3E+02 0.0045 19.8 4.1 46 108-154 4-49 (65)
344 1bpo_A Protein (clathrin); cla 22.7 5.3E+02 0.018 25.0 12.5 110 120-233 343-452 (494)
345 3mwm_A ZUR, putative metal upt 22.3 1.2E+02 0.004 23.6 4.7 50 109-158 16-65 (139)
346 2f8y_A Notch homolog 1, transl 22.0 3.3E+02 0.011 22.4 8.3 50 112-165 28-79 (223)
347 3twr_A Tankyrase-2; ankyrin re 21.9 2.3E+02 0.0077 22.0 6.8 12 221-232 16-27 (165)
348 3us6_A Histidine-containing ph 21.8 3E+02 0.01 21.7 10.7 26 213-238 96-121 (153)
349 1wgl_A TOLL-interacting protei 21.5 1E+02 0.0035 19.8 3.4 17 223-239 36-52 (59)
350 1ug3_A EIF4GI, eukaryotic prot 21.4 3.5E+02 0.012 24.8 8.6 26 212-237 13-38 (339)
351 3eyy_A Putative iron uptake re 21.0 1.9E+02 0.0065 22.5 5.8 57 201-259 10-66 (145)
352 4fke_A Aminopeptidase N; zinc 21.0 7.8E+02 0.027 26.3 16.9 86 286-376 692-784 (909)
353 3t5v_B Nuclear mRNA export pro 20.8 4.4E+02 0.015 25.4 9.3 64 107-170 177-249 (455)
354 3pvs_A Replication-associated 20.1 5.8E+02 0.02 24.4 13.5 20 329-348 269-288 (447)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-42 Score=364.68 Aligned_cols=456 Identities=11% Similarity=0.028 Sum_probs=402.5
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHH
Q 043999 102 PVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGIL 181 (574)
Q Consensus 102 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (574)
+.+++..|+.++..|.+.|++++|+.+|++|.+. .|+..++..++.++.+.|++++|..+|+++... +++..+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l 156 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLA 156 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHH
Confidence 3467889999999999999999999999999864 578899999999999999999999999998653 7799999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC---------------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEM---------------GFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQH 246 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 246 (574)
+.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|.+.|+++.+.++. +..
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 235 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYE 235 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhH
Confidence 99999999999999999953321 23346889999999999999999999999999887643 333
Q ss_pred hHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 043999 247 TYTVL--------------------------------------ICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIH 288 (574)
Q Consensus 247 ~~~~l--------------------------------------i~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 288 (574)
.+..+ +..|.+.|++++|.++|+++.+. +++..+++.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 33333 55666789999999999999875 579999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 043999 289 EYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDK 368 (574)
Q Consensus 289 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 368 (574)
.|.+.|++++|.++|+++.+.++. +..+|+.++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999987655 88899999999999999999999999998764 6678899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 369 AFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQK 448 (574)
Q Consensus 369 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 448 (574)
|.++|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998763 3468899999999999999999999999999874 34788999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 449 SGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWET----KLEPN--DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLV 522 (574)
Q Consensus 449 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 522 (574)
.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 65 567899999999999999999999999999876 66777 7899999999999999999999999999864 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHhhhh
Q 043999 523 PNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPS-VSLYNILYRAKN 571 (574)
Q Consensus 523 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 571 (574)
.+..+|..+..+|.+.|++++|.++++++++. .|+ ...|..|...|.
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRALE 595 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHh
Confidence 47899999999999999999999999999976 565 457777777664
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-39 Score=342.61 Aligned_cols=452 Identities=12% Similarity=0.030 Sum_probs=392.9
Q ss_pred CCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCCcchhHHHHHHHHHHhcCC
Q 043999 42 HTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPVTKSRLYESIIDAHLKSRL 121 (574)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 121 (574)
++...++.+++.+.+ .+++++|..++.+++.. .|+..+|..++.+|.+.|+
T Consensus 82 ~~~~~~~~~~~~~~~---~g~~~~A~~~~~~~~~~--------------------------~p~~~~~~~l~~~~~~~g~ 132 (597)
T 2xpi_A 82 SREDYLRLWRHDALM---QQQYKCAAFVGEKVLDI--------------------------TGNPNDAFWLAQVYCCTGD 132 (597)
T ss_dssp CHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH--------------------------HCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH---ccCchHHHHHHHHHHhh--------------------------CCCchHHHHHHHHHHHcCc
Confidence 456678899999998 99999999999887631 1355788999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCC----------------CCCHHHHHHHHHHH
Q 043999 122 SDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKV----------------ELDVYSFGILIKGC 185 (574)
Q Consensus 122 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~li~~~ 185 (574)
+++|+.+|+++... +++..+++.++.+|.+.|++++|+++|+++.... +.++.+|+.++.+|
T Consensus 133 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 133 YARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp HHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence 99999999998753 5789999999999999999999999999644332 34689999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHH--------------------------------------HHHHHHhcCCHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIYTS--------------------------------------LIDGCCKNGDIE 227 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--------------------------------------li~~~~~~g~~~ 227 (574)
.+.|++++|.+.|++|.+.+.. +...+.. ++..|.+.|+++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR 289 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHH
Confidence 9999999999999999986422 3333332 355667889999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 228 RAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMR 307 (574)
Q Consensus 228 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 307 (574)
+|.++|+++.+. .++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++++++.
T Consensus 290 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 290 RAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999875 4789999999999999999999999999999875 3478899999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043999 308 HREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVT 387 (574)
Q Consensus 308 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 387 (574)
+..+. +..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+
T Consensus 367 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 443 (597)
T 2xpi_A 367 DRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLP 443 (597)
T ss_dssp HHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHH
T ss_pred hhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHH
Confidence 76543 88999999999999999999999999998864 4568899999999999999999999999999874 347889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHH
Q 043999 388 YNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKS----GFSPD--VYTYGVL 461 (574)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l 461 (574)
|+.++..|.+.|++++|..+|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..+
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999999874 347899999999999999999999999999775 66777 7899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 043999 462 IHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVP-NIASYSSTIGVL 535 (574)
Q Consensus 462 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~ 535 (574)
+.+|.+.|++++|.+.++++.+.++ .+..+|..++.+|.+.|++++|.+.++++.+. .| +...+..+..+|
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 9999999999999999999998753 37899999999999999999999999999995 44 456666655544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.2e-29 Score=249.42 Aligned_cols=363 Identities=13% Similarity=0.042 Sum_probs=211.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCCh
Q 043999 112 IIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDL 191 (574)
Q Consensus 112 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 191 (574)
+...+.+.|++++|++.++++.+.. +.+...+..+...+.+.|++++|...++......|.+..+|..++..+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3456677788888888888877653 334555666666677777777777777777666667777777777777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 192 NKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKM 271 (574)
Q Consensus 192 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 271 (574)
++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.++. +...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777643 223456777777777777777777777777665432 3445555666666666666666666666
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 043999 272 QLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVI 351 (574)
Q Consensus 272 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 351 (574)
.+.. +.+..+|..+...+.+.|++++|...|+++.+.++. +...|..+...+...|++++|...+++..+.. +.+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 6542 223455666666666666666666666666555433 44555555555555666666665555555442 22344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 043999 352 TYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFV 431 (574)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 431 (574)
++..+...+.+.|++++|.+.|+++.+.+. .+..+|..+...+.+.|++++|...++++.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 555555555555555555555555555421 134445555555555555555555555554432 223444444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 432 RSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWE 483 (574)
Q Consensus 432 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 483 (574)
+.|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.|+++.+
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444444444432 22334444444444444444444444444443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.3e-29 Score=246.62 Aligned_cols=377 Identities=16% Similarity=0.065 Sum_probs=185.4
Q ss_pred HHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 043999 150 FVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERA 229 (574)
Q Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 229 (574)
.+.+.|++++|.+.++++....|.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 34445555555555555544444455555555555555555555555555544432 22444555555555555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 230 KMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR 309 (574)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 309 (574)
++.|+++.+..+. +..+|..+..++.+.|++++|.+.|+++.+ .
T Consensus 87 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------~ 130 (388)
T 1w3b_A 87 IEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQ-----------------------------------Y 130 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-----------------------------------H
T ss_pred HHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------------h
Confidence 5555555443221 233444555555555555555555555444 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043999 310 EVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYN 389 (574)
Q Consensus 310 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 389 (574)
.+. +...+..+...+...|++++|...|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+. .+...|.
T Consensus 131 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 207 (388)
T 1w3b_A 131 NPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYI 207 (388)
T ss_dssp CTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHH
Confidence 222 23334444444444444444444444444432 22334444444455555555555555555444321 1344444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043999 390 VLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKG 469 (574)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 469 (574)
.+...+...|++++|...+++..+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Confidence 55555555555555555555554432 1134445555555555555555555555555442 233445555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 470 NMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLN 549 (574)
Q Consensus 470 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 549 (574)
++++|.+.++++.+.. +.+..+++.++..+...|++++|.+.++++.+. .+.+..++..+..++.+.|++++|...++
T Consensus 286 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555442 224555555555555555555555555555553 12234555555555555555555555555
Q ss_pred HHHHcCCCCC-HHHHHHHHhhhhc
Q 043999 550 QMLKLGLKPS-VSLYNILYRAKNN 572 (574)
Q Consensus 550 ~m~~~g~~p~-~~~~~~l~~~~~~ 572 (574)
++++. .|+ ...|..+...+..
T Consensus 364 ~a~~~--~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 364 EAIRI--SPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHhh--CCCCHHHHHhHHHHHHH
Confidence 55532 343 2344444444433
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.8e-31 Score=268.80 Aligned_cols=204 Identities=23% Similarity=0.311 Sum_probs=109.5
Q ss_pred HHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHH
Q 043999 334 AERLLDQMKMAGISPNV-ITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGN---------SKM 403 (574)
Q Consensus 334 A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~~ 403 (574)
+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. .++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44444555555544332 34556666666666666666666666666666666666666666665443 345
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 404 ASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWE 483 (574)
Q Consensus 404 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 483 (574)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043999 484 TKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQ 537 (574)
Q Consensus 484 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 537 (574)
.|+.||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=5.1e-31 Score=265.48 Aligned_cols=188 Identities=15% Similarity=0.230 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCChh
Q 043999 176 YSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGD---------IERAKMLFRKIGELGLVATQH 246 (574)
Q Consensus 176 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~ 246 (574)
..++.+|++|++.|++++|+++|++|.+.|++||..+||+||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35677788888888888888888888888888888888888888876554 567777888887777777888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 247 TYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLC 326 (574)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 326 (574)
||++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888887777778888888888888888888888888888877788888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 043999 327 KEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDA 363 (574)
Q Consensus 327 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 363 (574)
+.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888887777778888887777777653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.9e-26 Score=232.18 Aligned_cols=440 Identities=11% Similarity=-0.034 Sum_probs=271.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
...|..+...+.+.|++++|+..|+++++.+ |+..++..+..++.+.|++++|.+.|+++....|.+..++..++.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4568888999999999999999999999875 78999999999999999999999999999888788899999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGF 265 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (574)
.+.|++++|.+.|+++.+.+. ++......++..+.+......+.+.+..+...+..|+...+..-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998753 4555555666655554444444444433322221111111111100001111111111
Q ss_pred HHHHHHHHCCC---------CCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----C--CC------CCCHHHHHH
Q 043999 266 EFYEKMQLNGV---------SPSLYTYNCLIHEYCN---EGKVSEGFKLFDEMRH-----R--EV------ACNVVTYNT 320 (574)
Q Consensus 266 ~~~~~~~~~g~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~--~~------~~~~~~~~~ 320 (574)
.+...+..... +.+...+......+.. .|++++|...|+++.+ . .+ +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111100 1112333333333333 5667777777766655 2 11 112445566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043999 321 LICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGN 400 (574)
Q Consensus 321 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 400 (574)
+...+...|++++|...++.+.+.. |+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 6666667777777777777766653 225566666666777777777777777666553 2245566666666777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 401 SKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNS 480 (574)
Q Consensus 401 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 480 (574)
+++|...++++.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.+++
T Consensus 320 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777666532 245566666666677777777777777666543 33455666666677777777777777776
Q ss_pred HHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 481 MWETKLE-PN----DVVYNMMIFGYCK---EGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 481 ~~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
+.+.... ++ ...+..+...+.. .|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...+++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6653211 11 2366666666776 677777777777766642 2345566666677777777777777777776
Q ss_pred Hc
Q 043999 553 KL 554 (574)
Q Consensus 553 ~~ 554 (574)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=5e-24 Score=215.24 Aligned_cols=329 Identities=10% Similarity=0.024 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 124 QALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 124 ~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
.+...+.+..... +.+..++..+...+.+.|++++|+..|+++....|.+..+|..++..+.+.|++++|.+.|+++.+
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444332 234455555566666666666666666665554455566666666666666666666666666655
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043999 204 MGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQ---HTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSL 280 (574)
Q Consensus 204 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 280 (574)
.+. .+..++..+...|.+.|++++|.+.|+++.+.++. +. ..+..++..+..
T Consensus 89 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----------------------- 143 (450)
T 2y4t_A 89 LKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM----------------------- 143 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------
T ss_pred cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------
Confidence 431 23455555666666666666666666665554321 22 344444332000
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 043999 281 YTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGF 360 (574)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 360 (574)
..+..+...+.+.|++++|...|+++.+..+. +...+..+...|.+.|++++|...|+++.+.. +.+..++..+...|
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 00111222344455555555555555443322 44445555555555555555555555544432 23444455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HhHH
Q 043999 361 CDAGETDKAFRLFNQLKSNGQSPSVVTYNVL------------IRAFSKAGNSKMASDLVREMEERGITPS-----EVTY 423 (574)
Q Consensus 361 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~ 423 (574)
...|++++|...|+++.+... .+...+..+ ...+.+.|++++|...++++.+.. |+ ...+
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~ 298 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSK 298 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHH
Confidence 555555555555555544311 122222222 455555666666666666655532 22 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 424 TILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWET 484 (574)
Q Consensus 424 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 484 (574)
..+...+.+.|++++|...++.+.+.. +.+...|..+..+|...|++++|.+.++++++.
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 555555666666666666666555432 334555556666666666666666666666553
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.2e-24 Score=218.39 Aligned_cols=443 Identities=9% Similarity=-0.020 Sum_probs=322.6
Q ss_pred HHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCCcchhHHHHHHHHHHhcCChHHH
Q 043999 46 SISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPVTKSRLYESIIDAHLKSRLSDQA 125 (574)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 125 (574)
.+......+.. .+++++|...+.+++... |++.+|..+..+|.+.|++++|
T Consensus 8 ~~~~~g~~~~~---~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~la~~~~~~g~~~~A 58 (514)
T 2gw1_A 8 ALKDKGNQFFR---NKKYDDAIKYYNWALELK--------------------------EDPVFYSNLSACYVSVGDLKKV 58 (514)
T ss_dssp HHHHHHHHHHH---TSCHHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHH---hccHHHHHHHHHHHHhcC--------------------------ccHHHHHhHHHHHHHHhhHHHH
Confidence 44555566667 899999999998886432 3677899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043999 126 LFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMG 205 (574)
Q Consensus 126 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 205 (574)
+..|+++++.+ +.+..++..+..++.+.|++++|...|+++....+++......++..+.+......+.+.+..+...+
T Consensus 59 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (514)
T 2gw1_A 59 VEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT 137 (514)
T ss_dssp HHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 44678899999999999999999999999887766666666666666665555555555554443333
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 043999 206 FSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGL---------VATQHTYTVLICGLFK---NGLQKDGFEFYEKMQL 273 (574)
Q Consensus 206 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~ 273 (574)
..|+...+..-...............+...+..... +.+...+......+.. .|++++|...|+++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp -------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 223222222211111112222222222222211111 1124445555555554 7899999999998887
Q ss_pred -----CCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 274 -----NGVS--------PSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQ 340 (574)
Q Consensus 274 -----~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 340 (574)
.... .+..++..+...+...|++++|...|+++.+..+. ...+..+...+...|++++|...++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3111 23456778888899999999999999998887654 78888899999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043999 341 MKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSE 420 (574)
Q Consensus 341 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 420 (574)
+.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+.
T Consensus 296 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 296 ALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp HHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred HhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 88764 45677888899999999999999999999988643 356788888999999999999999999998763 3356
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH
Q 043999 421 VTYTILIDSFVRSDDMEKAFEMYSLMQKSGF-SPD----VYTYGVLIHGLCM---KGNMKEASKLFNSMWETKLEPNDVV 492 (574)
Q Consensus 421 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~ 492 (574)
..+..+...+...|++++|...++.+.+... .++ ...+..+...+.. .|++++|.+.++++.+.... +..+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 451 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQA 451 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHH
Confidence 7888889999999999999999998876421 111 3378888999999 99999999999999886433 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043999 493 YNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIA 526 (574)
Q Consensus 493 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 526 (574)
+..+...|.+.|++++|.+.++++.+. .|+..
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 899999999999999999999999984 45543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=9.1e-24 Score=213.33 Aligned_cols=316 Identities=12% Similarity=0.053 Sum_probs=203.0
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHH
Q 043999 102 PVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGIL 181 (574)
Q Consensus 102 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (574)
.+.++..|..++..|.+.|++++|+.+|+++++.. +.+..++..+..++.+.|++++|...|+++....|.+..++..+
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 35667899999999999999999999999999864 45788999999999999999999999999988878889999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC-H---HhHHHHHHH------------HHhcCCHHHHHHHHHHHHhCCCCCCh
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEMGFSPN-V---VIYTSLIDG------------CCKNGDIERAKMLFRKIGELGLVATQ 245 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li~~------------~~~~g~~~~A~~~~~~~~~~~~~~~~ 245 (574)
+..|.+.|++++|.+.|+++.+.. |+ . ..+..++.. +.+.|++++|...|+++.+..+. +.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 999999999999999999999854 43 3 566666554 44555555555555555443322 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043999 246 HTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGL 325 (574)
Q Consensus 246 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 325 (574)
..+..++.+|.+.|++++|++.|+++.+.. +.+..++..+...|...|++++|...|+++.+..+. +...+..+...
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~- 254 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV- 254 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH-
Confidence 445555555555555555555555544331 223444455555555555555555555554433221 22222222000
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCC
Q 043999 326 CKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPS-----VVTYNVLIRAFSKAGN 400 (574)
Q Consensus 326 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~ 400 (574)
. ....+..+...+.+.|++++|.+.|+++.+. .|+ ...|..+...+.+.|+
T Consensus 255 ----------------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 255 ----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp ----------------H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred ----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCC
Confidence 0 0000111255666666666666666666654 222 2355666666666667
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 401 SKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKS 449 (574)
Q Consensus 401 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 449 (574)
+++|...++++.+.. +.+...+..+..+|...|++++|...++++.+.
T Consensus 311 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 311 PVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 777766666666542 224566666666666777777777777666654
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=8.9e-24 Score=218.53 Aligned_cols=434 Identities=10% Similarity=0.008 Sum_probs=260.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
...|..+...+.+.|++++|+..|+++++.. +.+..++..+..++.+.|++++|++.|+++....|.+..++..++..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4678999999999999999999999999875 457889999999999999999999999999888788999999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLV--ATQHTYTVLICGLFKNGLQKD 263 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 263 (574)
...|++++|.+.|+.+ .. .|+ .....+..+...+...+|...++++....+. +........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 9999999999999743 32 233 2233355666677778899999988654210 111112223333444444444
Q ss_pred HHHHHHHHHHCCCCCCHh-hHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHh
Q 043999 264 GFEFYEKMQLNGVSPSLY-TYNCLIHEYC--------NEGKVSEGFKLFDEMRHREVACNV-------VTYNTLICGLCK 327 (574)
Q Consensus 264 a~~~~~~~~~~g~~p~~~-~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~ 327 (574)
+...+...... .+... ....+...+. ..|++++|..+++++.+..+. +. .++..+...+..
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHh
Confidence 44333222211 11111 1122221111 123566666666666554333 22 234444555556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043999 328 EMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDL 407 (574)
Q Consensus 328 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 407 (574)
.|++++|...++.+.+. .|+...+..+...+...|++++|.+.++++.+.. +.+..+|..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 66666666666666654 3345556666666666666666666666665543 22455666666666666666666666
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-
Q 043999 408 VREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKL- 486 (574)
Q Consensus 408 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 486 (574)
++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+...
T Consensus 333 ~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 666665432 234556666666666666666666666665543 34455666666666666666666666666654311
Q ss_pred ----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 487 ----EPNDVVYNMMIFGYCKE----------GNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 487 ----~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
......+......+... |++++|...++++.+.. +.+..++..+..++.+.|++++|...+++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 01112233344455555 66666666666666542 2344556666666666666666666666666
Q ss_pred Hc
Q 043999 553 KL 554 (574)
Q Consensus 553 ~~ 554 (574)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=5.4e-22 Score=205.16 Aligned_cols=432 Identities=12% Similarity=0.009 Sum_probs=321.7
Q ss_pred HHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCCCCcchhHHHHHHHHHHhcCChHH
Q 043999 45 QSISIILRLLLSKMSSHSHAAAQTLILKIISGRITSSSFTPRSLLCHLTQLFPSSSNPVTKSRLYESIIDAHLKSRLSDQ 124 (574)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 124 (574)
..+..+...+.. .+++++|...+.+.+.. .|.++.+|..+..+|.+.|++++
T Consensus 26 ~~~~~~g~~~~~---~g~~~~A~~~~~~al~~-------------------------~p~~~~~~~~la~~~~~~g~~~~ 77 (537)
T 3fp2_A 26 VQLKNRGNHFFT---AKNFNEAIKYYQYAIEL-------------------------DPNEPVFYSNISACYISTGDLEK 77 (537)
T ss_dssp HHHHHHHHHHHH---TTCCC-CHHHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHH---hccHHHHHHHHHHHHhh-------------------------CCCCcHHHHHHHHHHHHcCCHHH
Confidence 445566666777 88999999888887643 23567889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043999 125 ALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 125 A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 204 (574)
|++.|+++++.+ +.+..++..+..++...|++++|+..|+.+... |+ .....+..+...+...+|.+.++++...
T Consensus 78 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 152 (537)
T 3fp2_A 78 VIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSK 152 (537)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999875 446888999999999999999999999744322 22 2222345566667778999999998653
Q ss_pred C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHh--------cCCHHHHHHHHHHHHH
Q 043999 205 G--FSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQ-HTYTVLICGLFK--------NGLQKDGFEFYEKMQL 273 (574)
Q Consensus 205 g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~--------~g~~~~a~~~~~~~~~ 273 (574)
. ..+........+..+....+.+.+...+.+..... +.. .....+...+.. .|++++|..+++++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~ 230 (537)
T 3fp2_A 153 DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD--TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS 230 (537)
T ss_dssp ------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC--SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccccccccchHhHHHHHHHhcChHHHHHHHhhccccc--cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1 01111122334555666777776665554433211 111 122223222222 2578999999999987
Q ss_pred CCCCCC--------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 274 NGVSPS--------LYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAG 345 (574)
Q Consensus 274 ~g~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 345 (574)
.. |+ ..++..+...+...|++++|.+.|+++.+..+ +...+..+...+...|++++|...++.+.+..
T Consensus 231 ~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 231 AN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 63 33 23466777888899999999999999988754 47888889999999999999999999998874
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 043999 346 ISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTI 425 (574)
Q Consensus 346 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 425 (574)
+.+..++..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 383 (537)
T 3fp2_A 307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTF 383 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 45678899999999999999999999999988643 356788899999999999999999999998874 336678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCH
Q 043999 426 LIDSFVRSDDMEKAFEMYSLMQKSGF-----SPDVYTYGVLIHGLCMK----------GNMKEASKLFNSMWETKLEPND 490 (574)
Q Consensus 426 li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~ 490 (574)
+...+...|++++|...++++.+... ......+..+...+... |++++|...++++.+..+. +.
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~ 462 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SE 462 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CH
Confidence 99999999999999999999876421 11122244455667777 9999999999999986433 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 491 VVYNMMIFGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 491 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
.++..+...|.+.|++++|.+.|+++.+.
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88999999999999999999999999984
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=8.7e-20 Score=177.87 Aligned_cols=329 Identities=11% Similarity=0.021 Sum_probs=197.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG 184 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 184 (574)
++..|..+...+.+.|++++|+..|+++++.. +.+..++..+...+...|++++|...|+++....|.+..++..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 35678888999999999999999999998864 34678888888899999999999999999887767788889999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC----CHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 043999 185 CCEAGDLNKAFEVLNQLEEMGFSP----NVVIYTSL------------IDGCCKNGDIERAKMLFRKIGELGLVATQHTY 248 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 248 (574)
+...|++++|.+.++++.+.. | +...+..+ ...+...|++++|.+.++++.+..+. +...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHH
Confidence 999999999999999988753 4 33344433 34455555555555555555444322 34445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043999 249 TVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKE 328 (574)
Q Consensus 249 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 328 (574)
..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+...+..+. +...+..+...
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH----
Confidence 555555555555555555555555432 223444455555555555555555555554443222 22211111000
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHH
Q 043999 329 MRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSV----VTYNVLIRAFSKAGNSKMA 404 (574)
Q Consensus 329 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A 404 (574)
. .......+...+.+.|++++|.+.++++.+.... +. ..+..+...+.+.|++++|
T Consensus 232 -------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 232 -------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp -------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 0 0000112244556666666666666666554221 22 1233455566666666666
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 405 SDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGL 465 (574)
Q Consensus 405 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 465 (574)
...+++..+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+.
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 66666666542 2255566666666666666666666666666543 33344444444443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.9e-19 Score=175.49 Aligned_cols=325 Identities=13% Similarity=0.041 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 043999 177 SFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLF 256 (574)
Q Consensus 177 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 256 (574)
.+..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHH
Confidence 33444444444444444444444444332 113334444444444444444444444444433221 3334444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC----CHhhHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043999 257 KNGLQKDGFEFYEKMQLNGVSP----SLYTYN------------CLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNT 320 (574)
Q Consensus 257 ~~g~~~~a~~~~~~~~~~g~~p----~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 320 (574)
..|++++|...++++.+. .| +...+. .+...+...|++++|.+.++++.+..+. +...+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 444444444444444433 12 111221 2234455555555555555555544332 4455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043999 321 LICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGN 400 (574)
Q Consensus 321 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 400 (574)
+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+... .+...+..+..
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~------- 230 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQ------- 230 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH-------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHH-------
Confidence 5555555555555555555555442 33445555555555555555555555555554321 11221111100
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 043999 401 SKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDV----YTYGVLIHGLCMKGNMKEASK 476 (574)
Q Consensus 401 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~ 476 (574)
+. .......+...+.+.|++++|...++.+.+.. +.+. ..+..+...+.+.|++++|.+
T Consensus 231 ----------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 231 ----------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp ----------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 00 00011122445566666666666666665542 1222 123345566666777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 043999 477 LFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN-IASYSSTIGVL 535 (574)
Q Consensus 477 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~ 535 (574)
.++++.+..+. +..+|..+...|...|++++|.+.++++.+. .|+ ...+..+..+.
T Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 294 ICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 77766664221 5566666777777777777777777777664 333 44444444443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=4.1e-18 Score=173.65 Aligned_cols=363 Identities=16% Similarity=0.070 Sum_probs=243.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 043999 126 LFYFHQMLDSGVRPRSNTFNSLLIFVIK----SCSFDKGWLFFSENRCKVELDVYSFGILIKGCCE----AGDLNKAFEV 197 (574)
Q Consensus 126 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 197 (574)
+..+++..+.| +..+...+...|.. .+++++|...|++.... .+..++..|...|.. .+++++|.+.
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 44444444433 45555556666655 66666777666665543 455666666666666 6677777777
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 043999 198 LNQLEEMGFSPNVVIYTSLIDGCCK----NGDIERAKMLFRKIGELGLVATQHTYTVLICGLFK----NGLQKDGFEFYE 269 (574)
Q Consensus 198 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~ 269 (574)
|++..+.| +...+..|...|.. .+++++|++.|++..+.| +...+..|...|.. .++.++|+++|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 77766643 45556666666666 667777777777766654 45566666666665 667777777777
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 043999 270 KMQLNGVSPSLYTYNCLIHEYCN----EGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCK----EMRVQEAERLLDQM 341 (574)
Q Consensus 270 ~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m 341 (574)
+..+.| +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|+..
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 776653 55666666666666 677777777777776654 45566666666664 67777777777777
Q ss_pred HHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHH
Q 043999 342 KMAGISPNVITYNKLIDGFCD----AGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKA-----GNSKMASDLVREME 412 (574)
Q Consensus 342 ~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~ 412 (574)
.+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|... +++++|...+++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 6654 44556666666666 677777777777776653 455666666666665 77778888777777
Q ss_pred HCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 043999 413 ERGITPSEVTYTILIDSFVRSD---DMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCM----KGNMKEASKLFNSMWETK 485 (574)
Q Consensus 413 ~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 485 (574)
+.| +...+..+...|...| +.++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 764 3455666666666555 6777888888777753 45667777777777 778888888888877754
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 043999 486 LEPNDVVYNMMIFGYCK----EGNSYRALRLLGEMNEKG 520 (574)
Q Consensus 486 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 520 (574)
+...+..|...|.. .+++++|..+|++..+.+
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 56677777777777 778888888888887764
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=5.1e-18 Score=172.94 Aligned_cols=383 Identities=13% Similarity=0.054 Sum_probs=318.7
Q ss_pred cchhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHcccCCCCCH
Q 043999 104 TKSRLYESIIDAHLK----SRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIK----SCSFDKGWLFFSENRCKVELDV 175 (574)
Q Consensus 104 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 175 (574)
.++.++..|...|.. .+++++|+..|++..+.| +..++..|...|.. .+++++|.+.|++.... .+.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 466778888888988 899999999999999876 67788889999998 89999999999998764 577
Q ss_pred HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhh
Q 043999 176 YSFGILIKGCCE----AGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCK----NGDIERAKMLFRKIGELGLVATQHT 247 (574)
Q Consensus 176 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 247 (574)
.++..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|++.|++..+.+ +..+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 888899999998 899999999999998875 67788888888987 889999999999998875 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043999 248 YTVLICGLFK----NGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCN----EGKVSEGFKLFDEMRHREVACNVVTYN 319 (574)
Q Consensus 248 ~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 319 (574)
+..+...|.. .++.++|.++|++..+.| +...+..+...|.. .++.++|.+.|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 9999999998 899999999999999865 66788888888886 889999999999998775 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043999 320 TLICGLCK----EMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDA-----GETDKAFRLFNQLKSNGQSPSVVTYNV 390 (574)
Q Consensus 320 ~li~~~~~----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~ 390 (574)
.+...|.. .++.++|+..|+...+.| +...+..+...|... +++++|...|++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 78888877 899999999999998875 566778888888887 89999999999999874 5667788
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 391 LIRAFSKAG---NSKMASDLVREMEERGITPSEVTYTILIDSFVR----SDDMEKAFEMYSLMQKSGFSPDVYTYGVLIH 463 (574)
Q Consensus 391 li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 463 (574)
+...|.+.| +.++|...|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887766 7899999999999874 67788888888888 899999999999999865 5677888888
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 464 GLCM----KGNMKEASKLFNSMWETKLE-P-NDVVYNMMIFGYCKEGNSYRALRLLGEMN 517 (574)
Q Consensus 464 ~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 517 (574)
.|.+ .++.++|...|++..+.+.. | +......+...+.. +.+.|.+..++..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~ 465 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYI 465 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHH
Confidence 8888 89999999999999987643 2 33344444333322 2344444444433
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=1.9e-18 Score=177.96 Aligned_cols=422 Identities=10% Similarity=0.038 Sum_probs=287.0
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILI 182 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 182 (574)
|.+..+|..++. +.+.|++++|..+|+++++. .+.+...|..++..+.+.|++++|..+|+++.... |++..|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHH
Confidence 456778888888 47788888888888888876 34467778888888888888888888888888765 4777777777
Q ss_pred HHH-HhcCChhHHHH----HHHHHHH-CCCCC-CHHhHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCChh
Q 043999 183 KGC-CEAGDLNKAFE----VLNQLEE-MGFSP-NVVIYTSLIDGCCK---------NGDIERAKMLFRKIGELGLVATQH 246 (574)
Q Consensus 183 ~~~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~ 246 (574)
... ...|+.++|.+ +|++... .|..| +...|...+....+ .|++++|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 34577777665 6666554 24443 45567777766554 677888888888877621111112
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH------HhCC---CCCC---
Q 043999 247 TYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEM------RHRE---VACN--- 314 (574)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~~---~~~~--- 314 (574)
.|..........|. .+...++. .+.+++++|..++.++ .+.. ++|+
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 22222211100110 01111111 1234456666666552 2221 2333
Q ss_pred -----HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------cCCHH-------
Q 043999 315 -----VVTYNTLICGLCKE----MRV----QEAERLLDQMKMAGISPNVITYNKLIDGFCD-------AGETD------- 367 (574)
Q Consensus 315 -----~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~------- 367 (574)
...|...+...... ++. +.+..+|++++... +.+...|..++..+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 24555555433221 222 47778888888763 5567788888887775 68876
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-hHHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 368 KAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPS-E-VTYTILIDSFVRSDDMEKAFEMYSL 445 (574)
Q Consensus 368 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~ 445 (574)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999999886323346888889999999999999999999999885 443 2 4788888888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 043999 446 MQKSGFSPDVYTYGVLIHG-LCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKG-LVP 523 (574)
Q Consensus 446 ~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 523 (574)
..+.. +.+...|...... +...|+.++|..+|++.++..+ .+...|..++..+.+.|+.++|..+|++....+ ..|
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 98763 2233333332222 3468999999999999987642 267889999999999999999999999999863 223
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 524 N--IASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 524 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
+ ...|...+......|+.+.+.++.+++.+.
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 347888888888899999999999999865
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=4.6e-18 Score=175.09 Aligned_cols=386 Identities=12% Similarity=0.036 Sum_probs=270.0
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHcccC---CCC
Q 043999 102 PVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFV-IKSCSFDKGWL----FFSENRCK---VEL 173 (574)
Q Consensus 102 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~-~~~g~~~~A~~----~~~~~~~~---~~~ 173 (574)
.|.+...|..++..+.+.|++++|..+|+++++.. |+...|..++... ...|++++|.+ +|+..... .++
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~ 119 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 119 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc
Confidence 35677899999999999999999999999999863 6877888777533 45688888766 77766543 345
Q ss_pred CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043999 174 DVYSFGILIKGCCE---------AGDLNKAFEVLNQLEEMGFSPNV---VIYTSLIDGCCKNGDIERAKMLFRKIGELGL 241 (574)
Q Consensus 174 ~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 241 (574)
+...|...+....+ .|++++|.++|++..+. |+. ..|..........|. ..+..++.
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~------- 188 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI-HLAKKMIE------- 188 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-------
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch-hHHHHHHH-------
Confidence 67888888887665 78999999999999873 332 233322221111110 00111110
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC--------HhhHHHHHHHHHhc----CCH----
Q 043999 242 VATQHTYTVLICGLFKNGLQKDGFEFYEKM------QLNG---VSPS--------LYTYNCLIHEYCNE----GKV---- 296 (574)
Q Consensus 242 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~------~~~g---~~p~--------~~~~~~li~~~~~~----g~~---- 296 (574)
.+.+++.+|..++.+. .+.. ++|+ ...|...+...... ++.
T Consensus 189 --------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~ 254 (530)
T 2ooe_A 189 --------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLIT 254 (530)
T ss_dssp --------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHH
T ss_pred --------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHH
Confidence 0123345555544442 2111 2332 13444444332221 222
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 043999 297 SEGFKLFDEMRHREVACNVVTYNTLICGLCK-------EMRVQ-------EAERLLDQMKMAGISPNVITYNKLIDGFCD 362 (574)
Q Consensus 297 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 362 (574)
+++..+|++.....+. +...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 3677788888776443 77888888887775 68876 899999998863234467888889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHhcCCHHHH
Q 043999 363 AGETDKAFRLFNQLKSNGQSPS-V-VTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDS-FVRSDDMEKA 439 (574)
Q Consensus 363 ~g~~~~A~~~~~~~~~~g~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A 439 (574)
.|++++|..+|+++.+. .|+ . ..|..++..+.+.|+.++|..+|++..+... .+...+...... +...|+.++|
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHH
Confidence 99999999999999885 443 3 5788888888889999999999999987632 223333322222 3468999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 440 FEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKL-EPN--DVVYNMMIFGYCKEGNSYRALRLLGEM 516 (574)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 516 (574)
..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.+.... .|+ ...|...+......|+.+.+..+.+++
T Consensus 411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988763 45678899999999999999999999999998643 332 457888888888899999999999999
Q ss_pred HHC
Q 043999 517 NEK 519 (574)
Q Consensus 517 ~~~ 519 (574)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=4.1e-19 Score=171.02 Aligned_cols=201 Identities=13% Similarity=-0.002 Sum_probs=109.9
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 043999 208 PNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLI 287 (574)
Q Consensus 208 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 287 (574)
.+...+..+...+...|++++|.++|+++.+..+. +...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34445555566666666666666666666554332 34445555555566666666666666655542 22444555555
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 043999 288 HEYCNEG-KVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGET 366 (574)
Q Consensus 288 ~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 366 (574)
..+...| ++++|.+.|+++.+..+. +...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 6666666 566666666665554333 44555555666666666666666666655542 22334444455555556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043999 367 DKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEE 413 (574)
Q Consensus 367 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 413 (574)
++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 66666665555542 22344555555555555555555555555543
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=5.6e-19 Score=170.06 Aligned_cols=286 Identities=9% Similarity=-0.045 Sum_probs=211.2
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
.++..+..++..+...|++++|+++|+++++.. +.+..++..++..+...|++++|...++++....+.+..+|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 455667888899999999999999999998764 3355667777888889999999999999888777778888888999
Q ss_pred HHHhcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 043999 184 GCCEAG-DLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQK 262 (574)
Q Consensus 184 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 262 (574)
.+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 999998 8999999999888754 235677888888888888888888888888776533 4566677788888888888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 263 DGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHRE--------VACNVVTYNTLICGLCKEMRVQEA 334 (574)
Q Consensus 263 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~~~~~~A 334 (574)
+|.+.+++..+.. +.+..++..+...+...|++++|...++++.+.. .+.+..++..+...+.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887653 3356677777778888888888888877776531 122345666777777777777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 335 ERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAF 395 (574)
Q Consensus 335 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 395 (574)
...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 77777766653 3355566666666777777777777776666542 22455555555555
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=2.4e-19 Score=175.70 Aligned_cols=309 Identities=10% Similarity=-0.041 Sum_probs=186.4
Q ss_pred HHHhcCCHHHHHH-HHHHHHhCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 043999 219 GCCKNGDIERAKM-LFRKIGELGLV---ATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEG 294 (574)
Q Consensus 219 ~~~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 294 (574)
.+...|++++|.+ .+++..+.... .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3344455555555 55543332111 123445555555556666666666666555542 224445555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043999 295 KVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFN 374 (574)
Q Consensus 295 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 374 (574)
++++|.+.|+++.+..+. +..++..+...+...|++++|...++++.+.. +.+...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh------
Confidence 666665555555554332 45555555555555555555555555555542 1111111111000 00
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043999 375 QLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITP-SEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSP 453 (574)
Q Consensus 375 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 453 (574)
. ..+ ...+. .+..+...|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.
T Consensus 178 -~----~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AGL-GPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hcc-cHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 000 00111 2233337888899999998888763221 46788888888999999999999998887764 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------
Q 043999 454 DVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVP---------- 523 (574)
Q Consensus 454 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------- 523 (574)
+..++..+...+...|++++|.+.++++.+..+ .+..++..+...|.+.|++++|...++++.+.....
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 677888899999999999999999999887643 267788899999999999999999999887742110
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 524 NIASYSSTIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 524 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
...+|..+..++.+.|++++|..++++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 15788899999999999999998876543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=6.5e-19 Score=172.54 Aligned_cols=303 Identities=11% Similarity=-0.027 Sum_probs=143.3
Q ss_pred hcCChHHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhH
Q 043999 118 KSRLSDQALF-YFHQMLDSGVR-P--RSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNK 193 (574)
Q Consensus 118 ~~g~~~~A~~-~~~~~~~~g~~-p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 193 (574)
..|++++|++ .|++.++.... | +...+..+...+.+.|++++|...|+++....|.+..++..++..+.+.|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3456666666 66554432110 1 233455566666666666666666666665555566666666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 194 AFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQL 273 (574)
Q Consensus 194 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 273 (574)
|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+..+. +...+..+... .. .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h--
Confidence 666666666543 224556666666666666666666666666554322 11111110000 00 0
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 043999 274 NGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVAC-NVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVIT 352 (574)
Q Consensus 274 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~ 352 (574)
..+. ..+.. +..+...|++++|...|+++.+..+.. +..++..+...+.+.|++++|+..++++.+.. +.+..+
T Consensus 179 --~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 179 --AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp ----------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 0000 00001 111224455555555555554432221 34445555555555555555555555554432 223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----------CHhH
Q 043999 353 YNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITP----------SEVT 422 (574)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~ 422 (574)
+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+..... ...+
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 5555555555555555555555554432 1234455555555555555555555555554321110 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 043999 423 YTILIDSFVRSDDMEKAFEMYS 444 (574)
Q Consensus 423 ~~~li~~~~~~g~~~~A~~~~~ 444 (574)
|..+..++...|+.++|..++.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHhCChHhHHHhHH
Confidence 5555555666666665555554
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.7e-15 Score=161.68 Aligned_cols=462 Identities=12% Similarity=0.087 Sum_probs=262.0
Q ss_pred HHHHHHhhCC--CCCCHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCC--CCCCCHHHHHHHHHhhCCCCC---CC
Q 043999 30 SLFNWASRQG--LQHTPQSISIILRLLLSKMSSHSHAAAQTLILKIISGRIT--SSSFTPRSLLCHLTQLFPSSS---NP 102 (574)
Q Consensus 30 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~---~~ 102 (574)
++.+|..... -..+|.-.+...+.+.. .+.+.++..++++++...-. .+...-+.++....+.-.+.. ..
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf~~---aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~ 1045 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAFMT---ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYIN 1045 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHHHh---CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHH
Confidence 4566654322 24456666778888887 99999999999998733210 111111122222222100000 00
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILI 182 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 182 (574)
..+......+...+...|.+++|..+|++... .....+.++ ...|++++|.+++++.. +..+|..+.
T Consensus 1046 kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn-----~p~vWsqLA 1112 (1630)
T 1xi4_A 1046 RLDNYDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN-----EPAVWSQLA 1112 (1630)
T ss_pred HhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC-----CHHHHHHHH
Confidence 01122234456666777777777777776421 122222232 25667777777776553 466677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQK 262 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 262 (574)
+++.+.|++++|++.|.+. -|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.++++
T Consensus 1113 KAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH
Confidence 7777777777777777543 256666777777777777777777777665543 23223334677777777766
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 263 DGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMK 342 (574)
Q Consensus 263 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 342 (574)
+...+. + .++...|..+...|...|++++|...|... ..|..+...+++.|++++|.+.+++..
T Consensus 1185 ele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1185 ELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 433332 1 345556666777777777777777777764 367777777777777777777776652
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH
Q 043999 343 MAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVT 422 (574)
Q Consensus 343 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 422 (574)
+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +-....
T Consensus 1249 ------n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1249 ------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred ------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 55677777777777777777766554322 245556677777777777777777776665442 223334
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHH
Q 043999 423 YTILIDSFVR--SDDMEKAFEMYSLMQKSGFSP------DVYTYGVLIHGLCMKGNMKEASKLF-------------NSM 481 (574)
Q Consensus 423 ~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~-------------~~~ 481 (574)
|+-+...+++ -+++.++.+.|..-. +++| +...|..++..|.+.|+++.|.... .+.
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~ 1394 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 1394 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHH
Confidence 5444444443 334445555544322 2222 3455677777777777777776221 111
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 482 WETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 482 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
+. ...|...|...+.-|.. ...+++.-+...+...+. +...+..+.+.|++.-+..+++.....
T Consensus 1395 i~--kv~n~elyykai~Fyl~--~~P~~lndLl~~l~~rlD-----~~R~V~l~~~~~~l~lik~yl~~vq~~ 1458 (1630)
T 1xi4_A 1395 IT--KVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNH 1458 (1630)
T ss_pred hc--ccccHHHHHHHHHHHHh--hChHHHHHHHHHhhhcCC-----hHHHHHHHHHcCChHHhHHHHHHHHHh
Confidence 11 12355566666666552 223333333333321111 234566667777777777777766543
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=4.3e-16 Score=166.21 Aligned_cols=381 Identities=15% Similarity=0.167 Sum_probs=289.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSG--VRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
+.--...+++|...|.+.+|++++++..-.+ +.-+....+.++.+..+. +..+..+..++.... ...-+..
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------d~~eIA~ 1057 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------DAPDIAN 1057 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc------cHHHHHH
Confidence 3334667889999999999999999988432 113445666666666555 445555555554421 1344778
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 043999 184 GCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKD 263 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 263 (574)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHH
Confidence 88899999999999998531 2233344433 7788999999998762 57789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 264 GFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKM 343 (574)
Q Consensus 264 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 343 (574)
|++.|.+. -|...|..++..+.+.|++++|.+.+...++... ++...+.++.+|++.+++++...+ ++
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~f----I~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF----IN 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHH----Hh
Confidence 99999764 3778888999999999999999999998877653 333344588999999998864433 22
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH
Q 043999 344 AGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTY 423 (574)
Q Consensus 344 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 423 (574)
.++...|..+.+.|...|++++|..+|... ..|..+...+++.|++++|.+.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 356677778999999999999999999885 37899999999999999999999877 266889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043999 424 TILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKE 503 (574)
Q Consensus 424 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 503 (574)
..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... .-....|+-+...|++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 99999999999999998876542 3456677799999999999999999999887654 22455677777777664
Q ss_pred --CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 043999 504 --GNSYRALRLLGEMNEKGLVP------NIASYSSTIGVLCQDGKWPEAE 545 (574)
Q Consensus 504 --g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~ 545 (574)
++..++.++|..-.. ++| +...|..++..|.+.|+++.|.
T Consensus 1328 ~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred CHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 456666666664433 333 4577999999999999999998
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.3e-18 Score=170.16 Aligned_cols=235 Identities=9% Similarity=-0.032 Sum_probs=160.0
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
.+...|..+...+.+.|++++|+..|+++++.. +.+..++..+..++.+.|++++|+..|+++....|.+..++..++.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 445668899999999999999999999998864 4468888889999999999999999999888777778888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-----------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHH
Q 043999 184 GCCEAGDLNKAFEVLNQLEEMGFSPNV-----------VIYTSLIDGCCKNGDIERAKMLFRKIGELGLV-ATQHTYTVL 251 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 251 (574)
.|...|++++|.+.++++.+.. |+. ..+..+...+.+.|++++|.+.++++.+..+. ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999998888742 221 12223456666677777777777776665432 145566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043999 252 ICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRV 331 (574)
Q Consensus 252 i~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 331 (574)
...+.+.|++++|++.|+++.+.. +.+..+|..+...|.+.|++++|...|+++.+..+. +..+|..+...|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 666666666666666666666542 224556666666666666666666666666554333 455566666666666666
Q ss_pred HHHHHHHHHHHH
Q 043999 332 QEAERLLDQMKM 343 (574)
Q Consensus 332 ~~A~~~~~~m~~ 343 (574)
++|...|+++.+
T Consensus 298 ~~A~~~~~~al~ 309 (365)
T 4eqf_A 298 REAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=6.9e-19 Score=172.26 Aligned_cols=265 Identities=10% Similarity=-0.052 Sum_probs=184.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 043999 280 LYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDG 359 (574)
Q Consensus 280 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 359 (574)
...+..+...+.+.|++++|.+.|+++.+..+. +..+|..+...+.+.|++++|+..|+++.+.. +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 334566666666666666666666666655433 55666666666666666666666666666553 3345666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhHHHHHHHH
Q 043999 360 FCDAGETDKAFRLFNQLKSNGQS---------PSVVTYNVLIRAFSKAGNSKMASDLVREMEERGIT-PSEVTYTILIDS 429 (574)
Q Consensus 360 ~~~~g~~~~A~~~~~~~~~~g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~ 429 (574)
|...|++++|.+.++++.+.... .....+..+...+.+.|++++|...++++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 66677777777766666553110 01223344567788888888898888888876322 157788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 430 FVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRA 509 (574)
Q Consensus 430 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 509 (574)
+...|++++|...++++.+.. +.+..+|..+...|.+.|++++|++.|+++++..+. +..++..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 889999999999998888764 556788899999999999999999999998876432 578888999999999999999
Q ss_pred HHHHHHHHHCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 510 LRLLGEMNEKGLVP-------------NIASYSSTIGVLCQDGKWPEAEVLLNQ 550 (574)
Q Consensus 510 ~~~~~~m~~~g~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 550 (574)
...++++.+. .| +...|..+..++...|+.+.+....++
T Consensus 301 ~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999998764 22 257788899999999999888877654
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.9e-18 Score=165.78 Aligned_cols=281 Identities=10% Similarity=0.087 Sum_probs=104.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043999 118 KSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEV 197 (574)
Q Consensus 118 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 197 (574)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|++.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4566777777777762 2236777777777777777777777543 3566777777777777777777776
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 198 LNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVS 277 (574)
Q Consensus 198 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 277 (574)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 6655553 3455667777777777777777776663 245567777777777777777777777755
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 043999 278 PSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLI 357 (574)
Q Consensus 278 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 357 (574)
..|..++.++.+.|++++|.+.+.++ . ++.+|..++.+|...|+++.|......+. ..+.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA--~----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA--N----STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH--T----CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc--C----CchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHH
Confidence 35777777777777777777777776 1 66777777777777777777755444322 2222244567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCC------CHhHHHHHHHH
Q 043999 358 DGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKA--GNSKMASDLVREMEERGITP------SEVTYTILIDS 429 (574)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li~~ 429 (574)
..|.+.|.+++|..+++...... +.....|+.+.-.|++- ++..+.+++|.. +.+++| +...|..++-.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776543 34556666666666554 233333333321 111121 34556677777
Q ss_pred HHhcCCHHHHHH
Q 043999 430 FVRSDDMEKAFE 441 (574)
Q Consensus 430 ~~~~g~~~~A~~ 441 (574)
|.+.++++.|..
T Consensus 292 y~~~~e~d~A~~ 303 (449)
T 1b89_A 292 YDKYEEYDNAII 303 (449)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHhhchHHHHHH
Confidence 777777776665
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1.1e-17 Score=160.73 Aligned_cols=280 Identities=9% Similarity=-0.045 Sum_probs=164.5
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
.+...|..+...+.+.|++++|+.+|+++++.. +.+..++..+...+...|++++|.+.|+++....+.+..++..++.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 345668888999999999999999999998864 3467788888888889999999999999888777778888888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-HH-HHHhcCCH
Q 043999 184 GCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVL-IC-GLFKNGLQ 261 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~ 261 (574)
.+...|++++|.+.++++.+.... +...+..+.... |+......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888899999999998888875321 222332220000 000000111 11 13344444
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 262 KDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQM 341 (574)
Q Consensus 262 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 341 (574)
++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++.+..+. +..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555554444432 123444455555555555555555555555444322 4445555555555555555555555555
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043999 342 KMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSP-----------SVVTYNVLIRAFSKAGNSKMASDLVRE 410 (574)
Q Consensus 342 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (574)
.+.. +.+...+..+...+.+.|++++|.+.++++.+..... +...|..+...+.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5442 2334455555555555556665555555554432111 244555566666666666666665543
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.4e-16 Score=161.67 Aligned_cols=383 Identities=9% Similarity=-0.058 Sum_probs=236.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC------
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDS--------GVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK------ 170 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------ 170 (574)
...+||.|...|...|++++|++.|++.++. ..+....+|+.+..+|...|++++|...++++...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4578999999999999999999999987642 11224678888999999999999999888876431
Q ss_pred --CCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHHhHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCC
Q 043999 171 --VELDVYSFGILIKGCCEA--GDLNKAFEVLNQLEEMGFSPNVVIYTSLIDG---CCKNGDIERAKMLFRKIGELGLVA 243 (574)
Q Consensus 171 --~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~ 243 (574)
......++..+..++.+. +++++|++.|++..+... -+...+..+..+ +...++.++|++.+++..+.++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 123456677666666554 468999999999887532 234455555444 34567788899888888776543
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043999 244 TQHTYTVLICGLFK----NGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYN 319 (574)
Q Consensus 244 ~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 319 (574)
+..++..+...+.. .|+.++|.+.+++..... +.+..++..+...|.+.|++++|...+++..+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 55566655555444 466788888888887653 346677888888899999999999999988877554 566676
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043999 320 TLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAG 399 (574)
Q Consensus 320 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 399 (574)
.+...|...+... .... ...........+..+.|...+++..+... .+..++..+...+...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhc
Confidence 6666553221110 0000 00000011112335667777777766532 24456667777777888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHh--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 400 NSKMASDLVREMEERGITPSEV--TYTILID-SFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASK 476 (574)
Q Consensus 400 ~~~~A~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 476 (574)
++++|...|++..+....+... .+..+.. .....|+.++|+..|.+..+. .|+..... +..+.+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHH
Confidence 8888888887777654332221 1222222 234677888888888887765 34432221 12334455
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 477 LFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKG 520 (574)
Q Consensus 477 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 520 (574)
+++..+...+ .+..+|..+...|...|++++|++.|++.++.|
T Consensus 418 ~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5666555432 266788888888888888888888888888753
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.6e-16 Score=159.64 Aligned_cols=391 Identities=12% Similarity=-0.031 Sum_probs=236.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHcccC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 043999 140 RSNTFNSLLIFVIKSCSFDKGWLFFSENRCK---------VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEM-----G 205 (574)
Q Consensus 140 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 205 (574)
....||.+...+...|++++|++.|++.... .+....+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556888888888888888888888875431 2345677888888888888888888888876542 1
Q ss_pred -CCC-CHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCC
Q 043999 206 -FSP-NVVIYTSLIDGCCKN--GDIERAKMLFRKIGELGLVATQHTYTVLICG---LFKNGLQKDGFEFYEKMQLNGVSP 278 (574)
Q Consensus 206 -~~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~~~~~g~~p 278 (574)
..+ ...++..+..++.+. +++++|++.|++..+..+. ++..+..+... +...++.++|++.+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 111 234555555555543 4678888888887776533 44455554444 334566777888887777653 22
Q ss_pred CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 043999 279 SLYTYNCLIHEYCN----EGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYN 354 (574)
Q Consensus 279 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~ 354 (574)
+..++..+...+.. .|++++|.+.+++.....+. +..++..+...|.+.|++++|+..+++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 44555555544443 35667788888777766544 66777777888888888888888888877653 33455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 043999 355 KLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSD 434 (574)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 434 (574)
.+...|...+.... ... ...........+..++|...+++..+.. +.+..++..+...+...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 66555532211111 000 0000011112234678888888887764 335667888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 435 DMEKAFEMYSLMQKSGFSPDVY--TYGVLIH-GLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALR 511 (574)
Q Consensus 435 ~~~~A~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 511 (574)
++++|...|++..+....+... .+..+.. .+...|+.++|+..|++.++. .|+..... +....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHH
Confidence 9999999999998865333221 2223322 345789999999999999885 44433222 22344556
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHH
Q 043999 512 LLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLG-LKPSVSLY 563 (574)
Q Consensus 512 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 563 (574)
++++..+.+ +.+..+|..+..++...|++++|.+.|++.++.| ..|+..+|
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 666666642 4467899999999999999999999999999764 34555444
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.6e-18 Score=166.26 Aligned_cols=354 Identities=13% Similarity=0.074 Sum_probs=164.1
Q ss_pred HhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 043999 152 IKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKM 231 (574)
Q Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 231 (574)
-+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 14 ~~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 36788999999999984 3359999999999999999999999653 577799999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043999 232 LFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREV 311 (574)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 311 (574)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77776653 3467889999999999999999998885 477789999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043999 312 ACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVL 391 (574)
Q Consensus 312 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 391 (574)
..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 47999999999999999999999988 278999999999999999999966555432 244445578
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 043999 392 IRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRS--DDMEKAFEMYSLMQKSGFSP------DVYTYGVLIH 463 (574)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~ 463 (574)
+..|.+.|++++|..+++...... +-....|+-+.-.|++- +++.+.++.|.. +.+++| +...|..+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988654 34566777777667654 344455554432 223333 4567899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043999 464 GLCMKGNMKEASKLFNSMWETK-----------LEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTI 532 (574)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~~~~-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 532 (574)
.|.+.++++.|....-+-.... -..+...|-..+.-|... .+ .++.-+-..+...+ | .+..+
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~p-~~l~~ll~~l~~~l--d---~~r~v 363 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KP-LLLNDLLMVLSPRL--D---HTRAV 363 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CG-GGHHHHHHHHGGGC--C---HHHHH
T ss_pred HHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-CH-HHHHHHHHHHHhcc--C---cHHHH
Confidence 9999999999876433221100 012455555555555521 11 12222222221101 1 23455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 043999 533 GVLCQDGKWPEAEVLLNQMLKLG 555 (574)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~g 555 (574)
..+.+.|.+.-+..+++.....+
T Consensus 364 ~~~~~~~~l~l~~~yl~~v~~~n 386 (449)
T 1b89_A 364 NYFSKVKQLPLVKPYLRSVQNHN 386 (449)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTTC
T ss_pred HHHHHcCCcHHHHHHHHHHHHhh
Confidence 55666676666666666665443
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.5e-17 Score=159.79 Aligned_cols=278 Identities=10% Similarity=-0.011 Sum_probs=197.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043999 143 TFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCK 222 (574)
Q Consensus 143 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 222 (574)
.+..+...+...|++++|...|+++....+.+..++..++..+...|++++|.+.++++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 344555566666666777666666665555566666666666666666666666666666542 2245566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH-HH-HHHhcCCHHHHH
Q 043999 223 NGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCL-IH-EYCNEGKVSEGF 300 (574)
Q Consensus 223 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l-i~-~~~~~g~~~~A~ 300 (574)
.|++++|.+.++++.+..+. +...+..+... .|+......+ .. .+...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 66666666666666554322 12222211100 0111111122 22 377889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 301 KLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNG 380 (574)
Q Consensus 301 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 380 (574)
+.++++.+..+. +...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+..
T Consensus 159 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 159 TLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999887655 78899999999999999999999999998874 4567889999999999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 381 QSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITP-----------SEVTYTILIDSFVRSDDMEKAFEMYSLMQ 447 (574)
Q Consensus 381 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 447 (574)
+.+...+..+...+.+.|++++|...++++.+..... +...+..+..++.+.|+.++|..+++...
T Consensus 237 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 -PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3468889999999999999999999999998753221 46788999999999999999999987543
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=6e-17 Score=152.26 Aligned_cols=256 Identities=12% Similarity=0.107 Sum_probs=171.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043999 253 CGLFKNGLQKDGFEFYEKMQLNGVSPSL--YTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMR 330 (574)
Q Consensus 253 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 330 (574)
+-....|++.+|+..+++.... .|+. .....+.++|...|++++|+..++. ..+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3344567777777766654432 2332 2444556777777777777765543 234456667777777777777
Q ss_pred HHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043999 331 VQEAERLLDQMKMAGISP-NVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVR 409 (574)
Q Consensus 331 ~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 409 (574)
.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777777665433 444555566777777777777777766 3466777777777888888888888888
Q ss_pred HHHHCCCCCCHhHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043999 410 EMEERGITPSEVTY---TILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKL 486 (574)
Q Consensus 410 ~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 486 (574)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|++.++++++..+
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 877653 443211 122233445578888888888887763 66777888888888888888888888888877643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHH
Q 043999 487 EPNDVVYNMMIFGYCKEGNSYR-ALRLLGEMNEKGLVPNIA 526 (574)
Q Consensus 487 ~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~ 526 (574)
. +..++..++..+...|+.++ +.++++++.+. .|+..
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 3 67778888888888888765 56788888773 45543
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=6.3e-17 Score=152.10 Aligned_cols=251 Identities=12% Similarity=0.020 Sum_probs=167.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCCh
Q 043999 114 DAHLKSRLSDQALFYFHQMLDSGVRPRS--NTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDL 191 (574)
Q Consensus 114 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 191 (574)
+-....|++..|+..+++.... .|+. .....+..+|...|++++|+..++. ..+|+..++..++..+...|+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 4445678888888877766443 2332 3445566778888888888775544 2456777777788888888888
Q ss_pred hHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 192 NKAFEVLNQLEEMGFSP-NVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEK 270 (574)
Q Consensus 192 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 270 (574)
++|++.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..+.+.|+.++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888877665434 445566666777888888888887776 24666777777777778888888888777
Q ss_pred HHHCCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 271 MQLNGVSPSLYTY---NCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGIS 347 (574)
Q Consensus 271 ~~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 347 (574)
+.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...|+++.+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 77653 443211 1223334445677777777777776633 366677777777777777777777777766653 3
Q ss_pred CChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 043999 348 PNVITYNKLIDGFCDAGETDK-AFRLFNQLKSN 379 (574)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~ 379 (574)
-+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 456666677777777776654 45666666654
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=183.75 Aligned_cols=164 Identities=14% Similarity=0.132 Sum_probs=129.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 043999 172 ELDVYSFGILIKGCCEAGDLNKAFEVLNQLEE---MGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTY 248 (574)
Q Consensus 172 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 248 (574)
..-..|||++|++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44567899999999999999999999988764 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 043999 249 TVLICGLFKNGLQ-KDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACN------VVTYNTL 321 (574)
Q Consensus 249 ~~li~~~~~~g~~-~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~l 321 (574)
+++|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+.+-+ +..+++ ..+..|+ +.+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH----HHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999984 78899999999999999999999998766554333 333333 2233333 4455666
Q ss_pred HHHHHhcCC---------HHHHHHHHHH
Q 043999 322 ICGLCKEMR---------VQEAERLLDQ 340 (574)
Q Consensus 322 i~~~~~~~~---------~~~A~~~~~~ 340 (574)
.+.|.+.+. .++-..+|++
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHH
Confidence 677776552 4555555554
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=9e-19 Score=181.06 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=110.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043999 418 PSEVTYTILIDSFVRSDDMEKAFEMYSLMQK---SGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYN 494 (574)
Q Consensus 418 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 494 (574)
.-..||+++|++||+.|++++|.++|+.|.+ .|+.||+.+||+||++||+.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999987754 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043999 495 MMIFGYCKEGN-SYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPS 559 (574)
Q Consensus 495 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 559 (574)
++|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++.++++ ..++.|+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 99999999887 478889999999999999999998888766553 333444444 3345554
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.73 E-value=1.7e-15 Score=151.81 Aligned_cols=347 Identities=12% Similarity=0.038 Sum_probs=212.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHcccCCCCCHHHHHHHHHHHHh
Q 043999 111 SIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSF---DKGWLFFSENRCKVELDVYSFGILIKGCCE 187 (574)
Q Consensus 111 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 187 (574)
.+...+.+.|++++|++.|++..+.| +..++..|...+...|+. ++|...|++.... ++.++..+...+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 46777889999999999999998876 334555566677778888 8999999888754 66677777775665
Q ss_pred cC-----ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043999 188 AG-----DLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIER---AKMLFRKIGELGLVATQHTYTVLICGLFKNG 259 (574)
Q Consensus 188 ~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 259 (574)
.| ++++|.+.|++..+.|. ...+..|...|...+..++ +.+.+.+....| +...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55 77899999999888653 3367777777777665443 444555544444 4567777778888777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHH
Q 043999 260 LQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEG---KVSEGFKLFDEMRHREVACNVVTYNTLICGLCKE----MRVQ 332 (574)
Q Consensus 260 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~ 332 (574)
.++++.+....+.+.-...++..+..|...|.+.| +.++|++.|++..+.|.. +...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 55554444333322211223447777888888888 788888888888877654 555555666666544 6788
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHH
Q 043999 333 EAERLLDQMKMAGISPNVITYNKLIDG-F--CDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAG-----NSKMA 404 (574)
Q Consensus 333 ~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-----~~~~A 404 (574)
+|+..|+... .| +...+..|... + ...+++++|.+.|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 8888888877 33 55566666666 3 45778888888888887765 5666666666665 44 77788
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 043999 405 SDLVREMEERGITPSEVTYTILIDSFVR----SDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCM----KGNMKEASK 476 (574)
Q Consensus 405 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 476 (574)
...|++.. .| +......|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 87777766 32 45555566655554 3377777777777776552 2334444444443 346777777
Q ss_pred HHHHHHhCC
Q 043999 477 LFNSMWETK 485 (574)
Q Consensus 477 ~~~~~~~~~ 485 (574)
.|+...+.|
T Consensus 380 ~~~~A~~~g 388 (452)
T 3e4b_A 380 FSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHCC
Confidence 777776654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.8e-15 Score=135.85 Aligned_cols=225 Identities=13% Similarity=0.062 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHH
Q 043999 316 VTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQS--PS----VVTYN 389 (574)
Q Consensus 316 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~----~~~~~ 389 (574)
..|..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|.+.++++.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555555566666666665555544 45555555555666666666666666555443111 11 35566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043999 390 VLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKG 469 (574)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 469 (574)
.+...+...|++++|...+++..+.. |+. ..+.+.|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666666542 232 23555667777777777777653 334556777777777888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 470 NMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLN 549 (574)
Q Consensus 470 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 549 (574)
++++|.+.++++.+.... +..+|..+...|...|++++|.+.++++.+.. +.+..+|..+..++.+.|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888887765433 56777778888888888888888888887752 3346777777888888888888888888
Q ss_pred HHHHc
Q 043999 550 QMLKL 554 (574)
Q Consensus 550 ~m~~~ 554 (574)
++++.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87754
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=2.2e-15 Score=151.04 Aligned_cols=374 Identities=11% Similarity=0.009 Sum_probs=251.6
Q ss_pred HHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 043999 147 LLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDL---NKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKN 223 (574)
Q Consensus 147 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 223 (574)
+...+.+.|++++|.++|++.... .+..++..|...|...|+. ++|.+.|++..+. +...+..|...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 556677899999999999988654 3455666777778888888 8999999988853 556677777766665
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 043999 224 G-----DIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQK---DGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGK 295 (574)
Q Consensus 224 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 295 (574)
+ ++++|+..|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5 78899999999988763 347888888888766543 4555555555544 45567778888888775
Q ss_pred HHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----C
Q 043999 296 VSEGFK----LFDEMRHREVACNVVTYNTLICGLCKEM---RVQEAERLLDQMKMAGISPNVITYNKLIDGFCDA----G 364 (574)
Q Consensus 296 ~~~A~~----~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g 364 (574)
++++.. +++..... ++..+..+...|.+.| +.++|+..|+...+.| +++...+..|...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 554444 44444333 5558888999999999 8999999999999887 55666556777777655 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-----CH
Q 043999 365 ETDKAFRLFNQLKSNGQSPSVVTYNVLIRA-F--SKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSD-----DM 436 (574)
Q Consensus 365 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~ 436 (574)
++++|.++|++.. . -+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 3 355666667666 3 46899999999999999876 5667777777776 45 99
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 043999 437 EKAFEMYSLMQKSGFSPDVYTYGVLIHGLCM----KGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCK----EGNSYR 508 (574)
Q Consensus 437 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 508 (574)
++|...|++.. . .+...+..|...|.. ..+.++|.+.|++..+.| +......|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHH
Confidence 99999999887 3 456677777777766 448999999999998865 34456667776664 458999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 509 ALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 509 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
|..+++...+.|. ++.......+......++.++|..+.++-.+
T Consensus 377 A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 377 AYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999873 2332222222222233466777777766553
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.8e-15 Score=136.28 Aligned_cols=224 Identities=11% Similarity=0.017 Sum_probs=154.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCC-------HHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELD-------VYSF 178 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~ 178 (574)
...|..+...+.+.|++++|+..|+++++.. .+..++..+..++...|++++|...++++....+.+ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4568888889999999999999999988876 677888888888888888888888888876542222 5777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043999 179 GILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKN 258 (574)
Q Consensus 179 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 258 (574)
..+...+.+.|++++|.+.|++..+. .|+. ..+.+.|++++|...++++....+. +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 88888888888888888888887774 2442 3455566777777777777665322 445566666666677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043999 259 GLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLL 338 (574)
Q Consensus 259 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 338 (574)
|++++|.+.+++..+.. +.+..++..+...|.+.|++++|.+.|++..+..+. +...|..+...+.+.|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777776666543 224556666666666666666666666666555333 4555666666666666666666666
Q ss_pred HHHHH
Q 043999 339 DQMKM 343 (574)
Q Consensus 339 ~~m~~ 343 (574)
+...+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=3e-15 Score=134.33 Aligned_cols=195 Identities=13% Similarity=0.023 Sum_probs=88.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG 184 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 184 (574)
++..|..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++.....|.+..++..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44555566666666666666666666665543 23455555555555666666666666665555545555555555555
Q ss_pred HHhc-----------CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043999 185 CCEA-----------GDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLIC 253 (574)
Q Consensus 185 ~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 253 (574)
+.+. |++++|++.+++..+... -+...+..+...+...|++++|+..|++..+.+ .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 5555 444444444444443221 123334444444444444444444444444333 23344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043999 254 GLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFD 304 (574)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 304 (574)
.+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|+
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444444444444444321 1123333334444444444444444333
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=3.3e-15 Score=134.02 Aligned_cols=201 Identities=12% Similarity=0.020 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043999 138 RPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLI 217 (574)
Q Consensus 138 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 217 (574)
+++...+..+...+.+.|++++|...|++.....|.+..++..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45777888899999999999999999999998888999999999999999999999999999999864 23677899999
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 043999 218 DGCCKN-----------GDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCL 286 (574)
Q Consensus 218 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 286 (574)
..+.+. |++++|+..+++..+..+. +...|..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 999999 9999999999999987654 67889999999999999999999999999886 688899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 287 IHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKM 343 (574)
Q Consensus 287 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 343 (574)
...|...|++++|+..|++..+..+. +...+..+...+.+.|++++|+..+++...
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999987655 788899999999999999999999987653
No 43
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=2.1e-12 Score=133.78 Aligned_cols=439 Identities=10% Similarity=0.031 Sum_probs=275.7
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHcccCC--CCCHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCS---FDKGWLFFSENRCKV--ELDVYS 177 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~--~~~~~~ 177 (574)
+.|..+|..++..+.+.+.++.+..+|++++.. ++.....|...+..-.+.|. ++.+..+|++..... +|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 456777888888777777888888888887765 45566677777777777777 778888888777765 377777
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CCC-HHhHHHHHHHHH---------hcCCHHHHHHHHHHHH
Q 043999 178 FGILIKGCCEAGDL--------NKAFEVLNQLEE-MGF-SPN-VVIYTSLIDGCC---------KNGDIERAKMLFRKIG 237 (574)
Q Consensus 178 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~~~ 237 (574)
|..-+....+.++. +...++|+.... .|. .|+ ...|...+.... .+++++.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 77777666555543 223466666443 354 443 356666665433 2344666777777776
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCC----
Q 043999 238 ELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRH--REV---- 311 (574)
Q Consensus 238 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~---- 311 (574)
......-..+|......-...+ ..+...++.- ...+++.|...+.++.. .++
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~--------------------~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVN--------------------QLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHC--------------------TTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hCccHHHHHHHHHHHHHHHhcC--------------------cchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 4211111122221111100000 0011111111 01123344444443321 011
Q ss_pred C-----------C--C------HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 043999 312 A-----------C--N------VVTYNTLICGLCKEM-------RVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGE 365 (574)
Q Consensus 312 ~-----------~--~------~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 365 (574)
+ | + ...|...+..--..+ ..+.+..+|++++.. ++-+...|-..+..+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCc
Confidence 0 1 0 134555544332222 133456778887765 35577788888888888888
Q ss_pred HHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC------------HhHH
Q 043999 366 TDKAF-RLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERG---------ITPS------------EVTY 423 (574)
Q Consensus 366 ~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~ 423 (574)
.++|. ++|++.... ++.+...|-..+...-+.|++++|..+|+++.+.. ..|+ ..+|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88896 999998875 44566677778888888999999999999887631 0131 2357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 424 TILIDSFVRSDDMEKAFEMYSLMQKS-GFSPDVYTYGVLIHGLCMK-GNMKEASKLFNSMWETKLEPNDVVYNMMIFGYC 501 (574)
Q Consensus 424 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 501 (574)
...+....+.|..+.|..+|....+. + ......|...+..-.+. ++.+.|.++|+..++. ..-+...|...+....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 77777778889999999999999875 2 22233443333333344 4589999999999886 2335667778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHhhh
Q 043999 502 KEGNSYRALRLLGEMNEKGLVP--NIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYRAK 570 (574)
Q Consensus 502 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 570 (574)
..|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.++.+++.+. .|+......+..-|
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 8999999999999998863211 3467888888888899999999999999976 56655555555444
No 44
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=3.2e-12 Score=132.44 Aligned_cols=403 Identities=9% Similarity=0.030 Sum_probs=255.1
Q ss_pred CcchhHHHHHHHHHHhcCC---hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh----hH----HHHHHHHcccC
Q 043999 103 VTKSRLYESIIDAHLKSRL---SDQALFYFHQMLDSG-VRPRSNTFNSLLIFVIKSCSF----DK----GWLFFSENRCK 170 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~g~~----~~----A~~~~~~~~~~ 170 (574)
|.....|...+..-.+.|+ ++.+..+|++.+... .+|++..|...+....+.++. ++ ..++|+.....
T Consensus 97 P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~ 176 (679)
T 4e6h_A 97 PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK 176 (679)
T ss_dssp TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4566789999999899999 999999999999863 148888999988877766654 33 44788876653
Q ss_pred --C--CCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 171 --V--ELDVYSFGILIKGCCE---------AGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIG 237 (574)
Q Consensus 171 --~--~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 237 (574)
. +.+...|...+..... .++++.+.++|++.+......-..+|......--..+. ..+.+++.+.
T Consensus 177 vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~- 254 (679)
T 4e6h_A 177 CAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL- 254 (679)
T ss_dssp TTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-
T ss_pred hCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-
Confidence 2 2345788888876542 44678899999998863211112233322211111111 1122222111
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCC----C-----------C--C------HhhHHHHHHHHHh
Q 043999 238 ELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQL--NGV----S-----------P--S------LYTYNCLIHEYCN 292 (574)
Q Consensus 238 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~g~----~-----------p--~------~~~~~~li~~~~~ 292 (574)
...++.|...+.++.. .++ + | + ...|...+..--.
T Consensus 255 --------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~ 314 (679)
T 4e6h_A 255 --------------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESD 314 (679)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHT
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHh
Confidence 1122223333322211 011 0 1 0 1233344433222
Q ss_pred cC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 043999 293 EG-------KVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAE-RLLDQMKMAGISPNVITYNKLIDGFCDAG 364 (574)
Q Consensus 293 ~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g 364 (574)
.+ ..+.+..+|++.+..-+. +...|-..+..+.+.|+.++|. .+|++.... ++.+...|-..+....+.|
T Consensus 315 ~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~ 392 (679)
T 4e6h_A 315 NKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNT 392 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred CCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhC
Confidence 22 123455677777765333 7788888888888888888886 899888764 4556666777888888889
Q ss_pred CHHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhH
Q 043999 365 ETDKAFRLFNQLKSNGQ---------SP------------SVVTYNVLIRAFSKAGNSKMASDLVREMEER-GITPSEVT 422 (574)
Q Consensus 365 ~~~~A~~~~~~~~~~g~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~ 422 (574)
+++.|.++|+.+.+... .| ....|...+....+.|..+.|..+|.+..+. +. +....
T Consensus 393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~l 471 (679)
T 4e6h_A 393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDI 471 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHH
Confidence 99999999988875310 13 1235777777777888899999999998875 21 12333
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 043999 423 YTILIDSFVRS-DDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEP--NDVVYNMMIFG 499 (574)
Q Consensus 423 ~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~ 499 (574)
|...+..-.+. ++.+.|.++|+...+. ++.+...+...+......|+.+.|..+|+..+.....+ ....|...+.-
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 43333333333 4589999999988776 45566777788888888899999999999988764322 34678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 500 YCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIG 533 (574)
Q Consensus 500 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 533 (574)
-.+.|+.+.+.++.+++.+. .|+......+++
T Consensus 551 E~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 88899999999999999885 344433334443
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=7.5e-14 Score=125.80 Aligned_cols=205 Identities=9% Similarity=-0.065 Sum_probs=141.4
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILI 182 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 182 (574)
+.++.+|..+...+...|++++|++.|+++++.. +.+..++..+...+...|++++|.+.|+++....+.+..++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3456778888888888899999999888888764 335677777778888888888888888877766666777777788
Q ss_pred HHHHhc-CChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 043999 183 KGCCEA-GDLNKAFEVLNQLEEMGFSPN-VVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGL 260 (574)
Q Consensus 183 ~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 260 (574)
..+... |++++|.+.++++.+.+..|+ ...+..+...+.+.|++++|...++++.+..+. +...+..+...+.+.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCC
Confidence 888888 888888888887776322232 456667777777777777777777777665432 45566666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 261 QKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR 309 (574)
Q Consensus 261 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 309 (574)
+++|.+.++++.+.....+...+..+...+...|+.++|...++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666666666665432134455555555566666666666666665543
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=2.8e-14 Score=138.60 Aligned_cols=234 Identities=7% Similarity=-0.020 Sum_probs=180.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCS-FDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
+..+|+.+...+.+.|++++|+..|+++++.. +-+..+|+.+..++.+.|+ +++|+..|+++....|.+..+|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 45778889999999999999999999998864 3367788888888999996 999999999988877888889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHH
Q 043999 184 GCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFK-NGLQK 262 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 262 (574)
.+.+.|++++|+..|+++++... -+...|..+..++.+.|++++|+..|+++++.++. +...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999888643 36778888888888999999999999998887654 67788888888888 56556
Q ss_pred HH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC------
Q 043999 263 DG-----FEFYEKMQLNGVSPSLYTYNCLIHEYCNEG--KVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEM------ 329 (574)
Q Consensus 263 ~a-----~~~~~~~~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~------ 329 (574)
+| ++.+++.++.. +-+...|+.+...+.+.| ++++|.+.+.++ +..+ .+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccc
Confidence 66 47777777653 225567777777777766 577777777776 3322 25666777777776653
Q ss_pred ---CHHHHHHHHHHH-HHC
Q 043999 330 ---RVQEAERLLDQM-KMA 344 (574)
Q Consensus 330 ---~~~~A~~~~~~m-~~~ 344 (574)
..++|+.+++++ .+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 247777777777 443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=6.9e-14 Score=128.68 Aligned_cols=202 Identities=10% Similarity=-0.009 Sum_probs=146.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
...|..+...|...|++++|++.|+++++.. +.+..++..+...+...|++++|.+.|+++....+.+..++..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5778888899999999999999999988764 346777777888888888888888888887766666777888888888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSP-NVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDG 264 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 264 (574)
...|++++|.+.++++.+.+..| +...+..+...+.+.|++++|.+.+++..+.... +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888877632233 4456677777777777777777777777665432 456666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043999 265 FEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHRE 310 (574)
Q Consensus 265 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 310 (574)
...++++.+.. +.+...+..+...+.+.|+.++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777766543 2345556666666666777777777766666553
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=7.1e-13 Score=123.54 Aligned_cols=224 Identities=13% Similarity=0.003 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043999 314 NVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCD----AGETDKAFRLFNQLKSNGQSPSVVTYN 389 (574)
Q Consensus 314 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~ 389 (574)
++.++..+...+...|++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555666666666666666666666532 44555556666666 666666666666666653 555666
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043999 390 VLIRAFSK----AGNSKMASDLVREMEERGITPSEVTYTILIDSFVR----SDDMEKAFEMYSLMQKSGFSPDVYTYGVL 461 (574)
Q Consensus 390 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 461 (574)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666777777776666653 45566666666666 677777777777776654 44555666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 462 IHGLCM----KGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCK----EGNSYRALRLLGEMNEKGLVPNIASYSSTIG 533 (574)
Q Consensus 462 i~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 533 (574)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 777777777777777653 45666777777777 777777887777777753 2556666777
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 043999 534 VLCQ----DGKWPEAEVLLNQMLKLG 555 (574)
Q Consensus 534 ~~~~----~g~~~~A~~~~~~m~~~g 555 (574)
.|.+ .+++++|.+++++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777 777788888888777663
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=7.8e-13 Score=123.28 Aligned_cols=223 Identities=10% Similarity=-0.024 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 043999 174 DVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCK----NGDIERAKMLFRKIGELGLVATQHTYT 249 (574)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 249 (574)
+..++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455555555566666666666666655552 234455555555555 566666666666655543 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043999 250 VLICGLFK----NGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCN----EGKVSEGFKLFDEMRHREVACNVVTYNTL 321 (574)
Q Consensus 250 ~li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 321 (574)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 556666666665555543 44555555555555 555666666665555543 34445555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 322 ICGLCK----EMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCD----AGETDKAFRLFNQLKSNGQSPSVVTYNVLIR 393 (574)
Q Consensus 322 i~~~~~----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 393 (574)
...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555554 555566666655555543 33445555555555 555555655555555542 2444444555
Q ss_pred HHHh----cCChHHHHHHHHHHHHC
Q 043999 394 AFSK----AGNSKMASDLVREMEER 414 (574)
Q Consensus 394 ~~~~----~g~~~~A~~~~~~m~~~ 414 (574)
.|.+ .+++++|...+++..+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555 55555555555555544
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.2e-14 Score=135.56 Aligned_cols=247 Identities=9% Similarity=-0.067 Sum_probs=162.5
Q ss_pred hcCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHH
Q 043999 118 KSRLSDQALFYFHQMLDSGVR---PRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKA 194 (574)
Q Consensus 118 ~~g~~~~A~~~~~~~~~~g~~---p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 194 (574)
..|++++|+..|+++++.... .+..++..+...+...|++++|...|+++....+.+..+|..++..+...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 457889999999998876321 13566777788888888888888888888777677788888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 195 FEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLN 274 (574)
Q Consensus 195 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 274 (574)
.+.|+++.+.. +.+..++..+...+.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+.+....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888887753 2356778888888888888888888888887654 33333444444556667777888777666654
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 043999 275 GVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVAC---NVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVI 351 (574)
Q Consensus 275 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 351 (574)
. +++...+ .++..+...++.++|.+.++...+..... +..++..+...+.+.|++++|...|+++.+.. |+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 2 2233333 35666666777777777777665442210 13556666666666777777777777666542 321
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 043999 352 TYNKLIDGFCDAGETDKAFRLF 373 (574)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~ 373 (574)
+......+...|++++|.+.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 122233445556666655544
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=7.1e-14 Score=135.74 Aligned_cols=247 Identities=11% Similarity=0.021 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043999 141 SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGD-LNKAFEVLNQLEEMGFSPNVVIYTSLIDG 219 (574)
Q Consensus 141 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 219 (574)
..+|..+...+.+.|++++|++.|+++....|.+..+|+.+...+.+.|+ +++|++.|+++++... -+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 45677788888899999999999999888888889999999999999996 9999999999988643 367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHH
Q 043999 220 CCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCN-EGKVSE 298 (574)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~g~~~~ 298 (574)
+.+.|++++|+..|+++++.++. +..+|..+..++.+.|++++|+..++++++... -+...|+.+...+.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999887655 788899999999999999999999999988743 367788888888888 566577
Q ss_pred H-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-------
Q 043999 299 G-----FKLFDEMRHREVACNVVTYNTLICGLCKEM--RVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAG------- 364 (574)
Q Consensus 299 A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g------- 364 (574)
| ++.|++.++..+. +...|+.+...+.+.| ++++|+..+..+ +. .+.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 4778888776555 6778888888888877 578888888887 33 3456677788888888764
Q ss_pred --CHHHHHHHHHHH-HHCCCCC-CHHHHHHHHHHH
Q 043999 365 --ETDKAFRLFNQL-KSNGQSP-SVVTYNVLIRAF 395 (574)
Q Consensus 365 --~~~~A~~~~~~~-~~~g~~~-~~~~~~~li~~~ 395 (574)
..++|.++++++ .+. .| ....|..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 257888888888 554 33 334555555444
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=2e-14 Score=131.37 Aligned_cols=211 Identities=8% Similarity=0.021 Sum_probs=150.3
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
..+..|..+...+.+.|++++|+..|+++++.. +.+..++..+...+.+.|++++|...|+++....+.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 456788999999999999999999999998864 4467888888889999999999999999888776778888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 043999 184 GCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKD 263 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 263 (574)
.+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.... +...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999888764 336777888888888899999999988888776433 56677788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043999 264 GFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYN 319 (574)
Q Consensus 264 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 319 (574)
|.+.++++.+.. +.+..++..+...|.+.|++++|.+.++++.+..+. +...+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 231 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALH 231 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHH
Confidence 888888877653 335667777778888888888888888887766443 333333
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=1.6e-13 Score=127.87 Aligned_cols=229 Identities=13% Similarity=0.058 Sum_probs=98.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcC
Q 043999 322 ICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPS--VVTYNVLIRAFSKAG 399 (574)
Q Consensus 322 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g 399 (574)
...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+..++ ...|..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 333444444444444444444332 12222344444444444444444444444443211111 122444444444444
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 400 NSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFN 479 (574)
Q Consensus 400 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 479 (574)
++++|...+++..+... .+..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.|+
T Consensus 89 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444321 133444444555555555555555555444432 2333444444422222335555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 480 SMWETKLEPNDVVYNMMIFGYCKEGN---SYRALRLLGEMNEKG-LVPN------IASYSSTIGVLCQDGKWPEAEVLLN 549 (574)
Q Consensus 480 ~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~ 549 (574)
++.+..+. +...+..+...+...|+ +++|...++++.+.. -.|+ ..+|..+...+.+.|++++|...++
T Consensus 167 ~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55543211 24444444555554454 444555555544320 0122 1344445555555555555555555
Q ss_pred HHHHc
Q 043999 550 QMLKL 554 (574)
Q Consensus 550 ~m~~~ 554 (574)
++++.
T Consensus 246 ~al~~ 250 (272)
T 3u4t_A 246 NILAL 250 (272)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=1.3e-13 Score=128.48 Aligned_cols=194 Identities=11% Similarity=0.044 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHh
Q 043999 215 SLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPS--LYTYNCLIHEYCN 292 (574)
Q Consensus 215 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~~~~~ 292 (574)
.....+...|++++|+..|++..+..+. +...+..+...+...|++++|++.+++..+.+..|+ ...|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344444444555555554444443321 233444444444445555555555544444211111 1124444455555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043999 293 EGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRL 372 (574)
Q Consensus 293 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 372 (574)
.|++++|.+.|++..+..+. +..+|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554443322 33445555555555555555555555544431 22333444444122223355555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHH
Q 043999 373 FNQLKSNGQSPSVVTYNVLIRAFSKAGN---SKMASDLVREME 412 (574)
Q Consensus 373 ~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 412 (574)
|+++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 55554432 1123444444444444444 444444444443
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=2.4e-14 Score=133.59 Aligned_cols=245 Identities=10% Similarity=-0.068 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043999 294 GKVSEGFKLFDEMRHREVA---CNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAF 370 (574)
Q Consensus 294 g~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 370 (574)
|++++|++.|+++.+.... .+..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555543211 123445555555555555555555555555542 234555555555566666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 371 RLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSG 450 (574)
Q Consensus 371 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 450 (574)
+.++++.+.. +.+...+..+...+.+.|++++|...++++.+. .|+.......+..+...|++++|...++......
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666555542 123455555666666666666666666666554 2233333333334455566667776666555442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043999 451 FSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEP---NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIAS 527 (574)
Q Consensus 451 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 527 (574)
+++...+ .++..+...++.++|.+.++++....... +..++..+...|...|++++|...++++.+. .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 3333333 35555666666677777777665432110 1456677777777777888888877777764 3422
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 043999 528 YSSTIGVLCQDGKWPEAEVLL 548 (574)
Q Consensus 528 ~~~l~~~~~~~g~~~~A~~~~ 548 (574)
+.....++...|++++|.+.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222344566667777776654
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=2.4e-13 Score=125.00 Aligned_cols=211 Identities=15% Similarity=0.032 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 043999 351 ITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSF 430 (574)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 430 (574)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344555555666666666666666655542 2245556666666666666666666666666543 22455666666667
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 431 VRSDDMEKAFEMYSLMQKSGFSP-DVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRA 509 (574)
Q Consensus 431 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 509 (574)
...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766522233 3456666777777777777777777777765322 466777777777777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043999 510 LRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILY 567 (574)
Q Consensus 510 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 567 (574)
...++++.+. .+.+...+..+...+.+.|++++|.++++++.+. .|+...+..++
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 249 (252)
T 2ho1_A 195 RQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHHH
T ss_pred HHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 8877777764 2345566777777777778888888888877765 45555444433
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=3.6e-13 Score=121.31 Aligned_cols=213 Identities=8% Similarity=-0.067 Sum_probs=134.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 043999 350 VITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDS 429 (574)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 429 (574)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555556666666666666666655542 2245556666666666666666666666666542 2245566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043999 430 FVRS-DDMEKAFEMYSLMQKSGFSPD-VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSY 507 (574)
Q Consensus 430 ~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 507 (574)
+... |++++|...++.+.+.+..|+ ...+..+...+...|++++|.+.++++.+.... +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 6777 777777777777665222222 456666777777777777777777777765322 4667777777777778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043999 508 RALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILY 567 (574)
Q Consensus 508 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 567 (574)
+|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+...+..++
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 88887777776421135566666666777778888887777777654 46655544443
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=7.6e-14 Score=127.54 Aligned_cols=200 Identities=14% Similarity=0.071 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043999 141 SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGC 220 (574)
Q Consensus 141 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 220 (574)
..++..+...+...|++++|...|+++....+.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 44455566666677777777777777666656666777777777777777777777777766543 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043999 221 CKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGF 300 (574)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 300 (574)
...|++++|.+.++++.+.... +...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 6777777777777666654432 45556666666666666666666666665542 224555555666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 301 KLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMA 344 (574)
Q Consensus 301 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 344 (574)
+.++++.+.... +..++..+...+.+.|++++|...++++.+.
T Consensus 180 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666665554332 4455555555555666666666666555554
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=1.5e-13 Score=136.06 Aligned_cols=237 Identities=12% Similarity=0.020 Sum_probs=140.8
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHcccC------CCC
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR----SNTFNSLLIFVIKSCSFDKGWLFFSENRCK------VEL 173 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~ 173 (574)
.....+..+...+.+.|++++|+..|+++++.+ +.+ ..++..+...+...|++++|...+++.... .+.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 445677888899999999999999999998864 223 246777788888999999999888876432 122
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCC--------------------HHH
Q 043999 174 DVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFS-PN----VVIYTSLIDGCCKNGD--------------------IER 228 (574)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~ 228 (574)
...++..+...+...|++++|.+.+++..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 3556778888888888888888888877652100 11 3366777777777777 777
Q ss_pred HHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCCHHH
Q 043999 229 AKMLFRKIGEL----GLV-ATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGV-SPS----LYTYNCLIHEYCNEGKVSE 298 (574)
Q Consensus 229 A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~p~----~~~~~~li~~~~~~g~~~~ 298 (574)
|.+.+++..+. +.. ....++..+...+...|++++|.+.+++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 77776665331 100 1123455555566666666666666655543200 011 1244445555555555555
Q ss_pred HHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 299 GFKLFDEMRHREVA----C-NVVTYNTLICGLCKEMRVQEAERLLDQM 341 (574)
Q Consensus 299 A~~~~~~m~~~~~~----~-~~~~~~~li~~~~~~~~~~~A~~~~~~m 341 (574)
|...+++..+.... + ...++..+...+.+.|++++|...+++.
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 55555544321100 0 0233444444444444444444444443
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.3e-13 Score=136.91 Aligned_cols=275 Identities=14% Similarity=0.043 Sum_probs=153.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHH
Q 043999 248 YTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSL----YTYNCLIHEYCNEGKVSEGFKLFDEMRHR----E-VACNVVTY 318 (574)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~ 318 (574)
+..+...+...|++++|+..|+++.+.+.. +. ..+..+...|...|++++|...+++..+. + ......++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334445555666666666666665554211 21 24455555555556666666555554332 0 01122344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh
Q 043999 319 NTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNG-QSPSVVTYNVLIRAFSK 397 (574)
Q Consensus 319 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~ 397 (574)
..+...|...|++++|...++++.+.. ...+ ......++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHH
Confidence 444444555555555555554443220 0000 00112344444555555
Q ss_pred cCC-----------------hHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC
Q 043999 398 AGN-----------------SKMASDLVREMEER----GIT-PSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGF-SPD 454 (574)
Q Consensus 398 ~g~-----------------~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 454 (574)
.|+ +++|...+++..+. +.. ....++..+...+...|++++|...+++..+... .++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 55555555544321 111 1223566666677777777777777776654210 011
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 043999 455 ----VYTYGVLIHGLCMKGNMKEASKLFNSMWETKL--E---PNDVVYNMMIFGYCKEGNSYRALRLLGEMNEK----GL 521 (574)
Q Consensus 455 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~ 521 (574)
...+..+...|...|++++|.+.+++..+... . ....++..+...|...|++++|.+.+++..+. +.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 23667777788888888888888887765311 0 11456777888888888888888888887653 10
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 522 VP-NIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 522 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
.+ ...++..+...+.+.|++++|..++++.++.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 1346777788888889999998888888754
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.4e-13 Score=136.71 Aligned_cols=277 Identities=12% Similarity=0.012 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHcccC------CCCCH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRS----NTFNSLLIFVIKSCSFDKGWLFFSENRCK------VELDV 175 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~ 175 (574)
...+..+...+...|++++|+..|+++++.+ +.+. .++..+...+...|++++|...|++.... .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4556678889999999999999999998864 2233 46777888888999999999988876543 23345
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCC-----------------HHHHHHHH
Q 043999 176 YSFGILIKGCCEAGDLNKAFEVLNQLEEM----GF-SPNVVIYTSLIDGCCKNGD-----------------IERAKMLF 233 (574)
Q Consensus 176 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 233 (574)
.++..+...|...|++++|.+.+++..+. +- +....++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888888888888888888888876653 11 1123466777777777777 67776666
Q ss_pred HHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHH
Q 043999 234 RKIGEL----GL-VATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVS-PS----LYTYNCLIHEYCNEGKVSEGFKLF 303 (574)
Q Consensus 234 ~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~ 303 (574)
++..+. +. .....++..+...+...|++++|.+.+++..+.... ++ ..++..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 654331 10 011234455555555555555555555554432100 01 113444444444455555554444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 043999 304 DEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGIS-PNVITYNKLIDGFCDAGETDKAFRLFNQLKSNG-- 380 (574)
Q Consensus 304 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-- 380 (574)
++..+.... .+.. ....++..+...|...|++++|.+.+++..+..
T Consensus 287 ~~al~~~~~-------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 287 KRTLALAVE-------------------------------LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHH-------------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 443321100 0000 012344445555555555555555555443320
Q ss_pred --C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043999 381 --Q-SPSVVTYNVLIRAFSKAGNSKMASDLVREMEER 414 (574)
Q Consensus 381 --~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 414 (574)
. .....++..+...|.+.|++++|...+++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0 001234555555666666666666666665543
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=2.5e-13 Score=130.51 Aligned_cols=276 Identities=13% Similarity=0.028 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHcccC------CCCCHH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR----SNTFNSLLIFVIKSCSFDKGWLFFSENRCK------VELDVY 176 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~ 176 (574)
..+......+.+.|++++|+..|+++++.. +.+ ...+..+...+...|++++|...+++.... .+....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 445667788889999999999999988864 223 356677778888888888888888775432 122355
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCC--------------------HHHHHH
Q 043999 177 SFGILIKGCCEAGDLNKAFEVLNQLEEMGF-SPN----VVIYTSLIDGCCKNGD--------------------IERAKM 231 (574)
Q Consensus 177 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~ 231 (574)
++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 677777888888888888888877654210 011 2356667777777777 666666
Q ss_pred HHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 232 LFRKIGEL----GLV-ATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGV-SPSLYTYNCLIHEYCNEGKVSEGFKLFDE 305 (574)
Q Consensus 232 ~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 305 (574)
.+++..+. +.. ....++..+...+...|++++|.+.+++..+... .++.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------------- 219 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK------------------------- 219 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH-------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh-------------------------
Confidence 66554321 100 0122344444555555555555555554432100 0000
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 306 MRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGI-SPN----VITYNKLIDGFCDAGETDKAFRLFNQLKSNG 380 (574)
Q Consensus 306 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 380 (574)
.....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+..
T Consensus 220 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 220 ------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp ------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 00112344444455555555555555544432110 001 2344455555556666666665555544320
Q ss_pred ----C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043999 381 ----Q-SPSVVTYNVLIRAFSKAGNSKMASDLVREMEER 414 (574)
Q Consensus 381 ----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 414 (574)
. .....++..+...+.+.|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0 001234555666666666666666666666543
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=4.7e-13 Score=132.46 Aligned_cols=121 Identities=13% Similarity=0.018 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-C
Q 043999 244 TQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPS----LYTYNCLIHEYCNEGKVSEGFKLFDEMRHR----EVAC-N 314 (574)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~ 314 (574)
....+......+...|++++|...|++..+.+.. + ..++..+...|...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4445556666777777777777777777665211 2 245666667777777777777777665332 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhcCC
Q 043999 315 VVTYNTLICGLCKEMRVQEAERLLDQMKMAGI-SPN----VITYNKLIDGFCDAGE 365 (574)
Q Consensus 315 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~ 365 (574)
..++..+...+...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 34555566666666666666666666554310 011 2244555555555555
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=2.1e-12 Score=112.43 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=133.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG 184 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 184 (574)
++.+|..|...|.+.|++++|++.|++.++.. +-+..++..+..++.+.|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678889999999999999999999988864 33677888888888888888888888888877777778888888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043999 185 CCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDG 264 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 264 (574)
+...++++.|.+.+++..+.. +.+...+..+...+.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 888888888888888877653 235677788888888888888888888888776543 667778888888888888888
Q ss_pred HHHHHHHHHC
Q 043999 265 FEFYEKMQLN 274 (574)
Q Consensus 265 ~~~~~~~~~~ 274 (574)
++.|++.++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888887764
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=1.4e-11 Score=116.99 Aligned_cols=80 Identities=9% Similarity=0.094 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHcccC-CCCCHHHHHHHHHHHHh
Q 043999 123 DQALFYFHQMLDSGVRPRSNTFNSLLIFVIK-------SCSF-------DKGWLFFSENRCK-VELDVYSFGILIKGCCE 187 (574)
Q Consensus 123 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~-------~g~~-------~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~ 187 (574)
++|+..|+++++.. +.+...|..++..+.. .|++ ++|..+|++.... .|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34555555555432 2234444444444432 2333 4444444444432 23333344444444444
Q ss_pred cCChhHHHHHHHHHHH
Q 043999 188 AGDLNKAFEVLNQLEE 203 (574)
Q Consensus 188 ~g~~~~A~~~~~~m~~ 203 (574)
.|++++|.++|++..+
T Consensus 112 ~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4444444444444443
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=1.5e-11 Score=116.78 Aligned_cols=219 Identities=10% Similarity=0.068 Sum_probs=180.6
Q ss_pred hHHHHHHHHcccCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 043999 158 DKGWLFFSENRCKVELDVYSFGILIKGCCE-------AGDL-------NKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKN 223 (574)
Q Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 223 (574)
++|...|+++....|.++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 678889998888778899999999988864 5886 99999999999731123566899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCCHHHHHH
Q 043999 224 GDIERAKMLFRKIGELGLVATQH-TYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYC-NEGKVSEGFK 301 (574)
Q Consensus 224 g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~ 301 (574)
|++++|.++|++..+..+. +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|+.++|.+
T Consensus 113 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999985432 343 89999999999999999999999999864 234455554443322 3699999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 302 LFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAG-ISP--NVITYNKLIDGFCDAGETDKAFRLFNQLKS 378 (574)
Q Consensus 302 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 378 (574)
+|+...+..+. +...|..++..+.+.|++++|..+|++..... .+| ....|..++....+.|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999877544 78899999999999999999999999999863 354 456888899999999999999999999987
Q ss_pred C
Q 043999 379 N 379 (574)
Q Consensus 379 ~ 379 (574)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 6
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=3.8e-12 Score=110.76 Aligned_cols=174 Identities=13% Similarity=0.034 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 384 SVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIH 463 (574)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 463 (574)
+...|..+...|.+.|++++|+..|++..+... -+...+..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 445566666666666666666666666665532 245556666666666677777766666665543 344555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043999 464 GLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPE 543 (574)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 543 (574)
.+...++++.|.+.+.+.....+. +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 666777777777777776664322 55666677777777777777777777776642 2345666677777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 043999 544 AEVLLNQMLKLGLKPSVSLY 563 (574)
Q Consensus 544 A~~~~~~m~~~g~~p~~~~~ 563 (574)
|...|++.++. .|+...|
T Consensus 160 A~~~~~~al~~--~p~~a~~ 177 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKKAKY 177 (184)
T ss_dssp HHHHHHHHHHT--THHHHHH
T ss_pred HHHHHHHHHhC--CccCHHH
Confidence 77777777754 5655443
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=9.8e-13 Score=126.29 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=132.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCC--------------------HHHHHH
Q 043999 247 TYTVLICGLFKNGLQKDGFEFYEKMQLNGV-SPS----LYTYNCLIHEYCNEGK--------------------VSEGFK 301 (574)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~ 301 (574)
++..+...+...|++++|.+.+++..+... .++ ..++..+...|...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 444444555555555555555544432100 011 2245555555666666 666666
Q ss_pred HHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCChhhHHHHHHHHHhcCCHHHHHH
Q 043999 302 LFDEMRHR----EV-ACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAG----I-SPNVITYNKLIDGFCDAGETDKAFR 371 (574)
Q Consensus 302 ~~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----~-~~~~~~~~~li~~~~~~g~~~~A~~ 371 (574)
.+++..+. +. .....++..+...+...|++++|...+++..+.. . .....++..+...+...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66554321 11 1123467777788888888888888888765431 0 1112377888899999999999999
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CC-CCHhHHHHHHHHHHhcCCHHHHHH
Q 043999 372 LFNQLKSNGQS-PS----VVTYNVLIRAFSKAGNSKMASDLVREMEERG----IT-PSEVTYTILIDSFVRSDDMEKAFE 441 (574)
Q Consensus 372 ~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~-p~~~~~~~li~~~~~~g~~~~A~~ 441 (574)
.+++..+.... .+ ..++..+...+...|++++|...+++..+.. .. ....++..+...+.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99987653111 11 5677888899999999999999999886531 11 113467788999999999999999
Q ss_pred HHHHHHHC
Q 043999 442 MYSLMQKS 449 (574)
Q Consensus 442 ~~~~~~~~ 449 (574)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998875
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=6.3e-12 Score=123.46 Aligned_cols=129 Identities=8% Similarity=-0.021 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC-CHHH
Q 043999 422 TYTILIDSFVRSDDMEKAFEMYSLMQKS----GF-SPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKL---EP-NDVV 492 (574)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~ 492 (574)
++..+...|...|++++|...+++..+. +. +....++..+...|.+.|++++|.+.+++..+... .| ....
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444455555555555555555554431 11 22234455555555555555555555555543200 11 1222
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 493 YNMMIFGYCKEGN---SYRALRLLGEMNEKGLVPN-IASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 493 ~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
+..+...|...|+ +++|+.++++. +..|+ ...+..+...|.+.|++++|..++++..+
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555555665 55555555544 12222 23455556666666666666666666653
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=1.2e-12 Score=132.06 Aligned_cols=213 Identities=11% Similarity=-0.057 Sum_probs=104.7
Q ss_pred hHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 158 DKGWLFFSENRCKVELDVYSFGILIKGCCEAGDL-NKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKI 236 (574)
Q Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 236 (574)
++++..+++.....+.+...+..+...+...|++ ++|.+.|++..+... .+...|..+...|.+.|++++|.+.|++.
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444443333334444555555555555555 555555555444321 13444555555555555555555555555
Q ss_pred HhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--------CCHHHH
Q 043999 237 GELGLVATQHTYTVLICGLFKN---------GLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNE--------GKVSEG 299 (574)
Q Consensus 237 ~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~--------g~~~~A 299 (574)
.+.. |+...+..+...+... |++++|++.|++..+.. +.+...|..+...|... |++++|
T Consensus 164 l~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 164 LTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 4433 3334444455555554 55555555555555432 12344455555555555 555555
Q ss_pred HHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 300 FKLFDEMRHREVA--CNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQ 375 (574)
Q Consensus 300 ~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 375 (574)
.+.|++..+..+. -+...|..+...|.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555555544220 145555555555555555555555555555442 22344455555555555555555554433
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=4.5e-12 Score=124.52 Aligned_cols=294 Identities=11% Similarity=-0.009 Sum_probs=212.8
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CC--CCChhhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCCCHhh
Q 043999 220 CCKNGDIERAKMLFRKIGEL--GL--VATQHTYTVLICG--LFKNGLQKDGF-----------EFYEKMQLNGVSPSLYT 282 (574)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~--~~~~g~~~~a~-----------~~~~~~~~~g~~p~~~~ 282 (574)
+.+.+++++|..+++++.+. .. .++...|..++.. ....+..+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45799999999999998653 22 2233344444432 22334455555 6777765431 12222
Q ss_pred HH------HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-
Q 043999 283 YN------CLIHEYCNEGKVSEGFKLFDEMRHR----EVAC-NVVTYNTLICGLCKEMRVQEAERLLDQMKMAGI-SPN- 349 (574)
Q Consensus 283 ~~------~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~~~- 349 (574)
+. .....+...|++++|...|++..+. +-.+ ...++..+...|...|++++|+..+++..+.-. .++
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 22 2556678899999999999998764 2111 346788899999999999999999999875321 111
Q ss_pred ----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC
Q 043999 350 ----VITYNKLIDGFCDAGETDKAFRLFNQLKSNGQS-PSV----VTYNVLIRAFSKAGNSKMASDLVREMEER----GI 416 (574)
Q Consensus 350 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 416 (574)
..+++.+...|...|++++|.+.+++..+.... ++. .++..+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 346788899999999999999999998764211 222 36888899999999999999999998762 23
Q ss_pred -CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC
Q 043999 417 -TPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKS----GFSPDVYTYGVLIHGLCMKGN---MKEASKLFNSMWETKLEP 488 (574)
Q Consensus 417 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p 488 (574)
+....++..+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++.. ..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHH
Confidence 334567888999999999999999999988653 112222345678888889999 888888888762 223
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 489 -NDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 489 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
....+..+...|...|++++|.+.+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345678899999999999999999999876
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=2.2e-13 Score=129.53 Aligned_cols=170 Identities=13% Similarity=0.102 Sum_probs=127.9
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC------
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDS-------GVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK------ 170 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------ 170 (574)
.+..+|..+...|...|++++|+.+|+++++. ..+....++..+...+...|++++|...++++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34688999999999999999999999999873 22334566778888899999999999988887643
Q ss_pred --CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 043999 171 --VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEM------GFSP-NVVIYTSLIDGCCKNGDIERAKMLFRKIGEL-- 239 (574)
Q Consensus 171 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 239 (574)
.+....++..+...|...|++++|.+.+++..+. +..| ...++..+...+...|++++|.+.+++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2334667888888888999999999888887763 2122 3456777888888888888888888887653
Q ss_pred ----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 240 ----GLVA-TQHTYTVLICGLFKNGLQKDGFEFYEKMQL 273 (574)
Q Consensus 240 ----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 273 (574)
+..| ...++..+...+...|++++|.+.++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 244677777788888888888888877764
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=4.8e-12 Score=127.63 Aligned_cols=211 Identities=11% Similarity=-0.007 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043999 296 VSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRV-QEAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFN 374 (574)
Q Consensus 296 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 374 (574)
++++.+.+++...... .+...+..+...+...|++ ++|+..|++..+.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444433322 2445555555555555555 55555555555442 2234555555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc--------CCHH
Q 043999 375 QLKSNGQSPSVVTYNVLIRAFSKA---------GNSKMASDLVREMEERGITPSEVTYTILIDSFVRS--------DDME 437 (574)
Q Consensus 375 ~~~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~ 437 (574)
+..+. .|+...+..+...+... |++++|...+++..+... .+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55554 24445555555555555 555666666655555421 2445555555555555 5566
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043999 438 KAFEMYSLMQKSGFS---PDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLL 513 (574)
Q Consensus 438 ~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 513 (574)
+|...|++..+.. + .+...|..+...|...|++++|.+.|+++.+..+. +...+..+...+...|++++|++.+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666665542 2 35555666666666666666666666666554322 4445555666666666666665543
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.1e-12 Score=124.68 Aligned_cols=245 Identities=13% Similarity=0.063 Sum_probs=113.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 043999 280 LYTYNCLIHEYCNEGKVSEGFKLFDEMRHR-------EVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMA------GI 346 (574)
Q Consensus 280 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~ 346 (574)
..++..+...+...|++++|...++++.+. ..+....++..+...+...|++++|...++++.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344556666666666666666666665542 11223344555555666666666666666555432 11
Q ss_pred -CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHH
Q 043999 347 -SPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITP-SEVTYT 424 (574)
Q Consensus 347 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~ 424 (574)
+....++..+...|...|++++|.+.++++.+... +.. .+..| ....+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~-~~~~~~~~~~~~ 157 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVL-GKDHPDVAKQLN 157 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHH-CTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------Hhc-CCCChHHHHHHH
Confidence 11233444455555555555555555554443200 000 01111 223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-
Q 043999 425 ILIDSFVRSDDMEKAFEMYSLMQKS------GFSP-DVYTYGVLIHGLCMKGNMKEASKLFNSMWET-------KLEPN- 489 (574)
Q Consensus 425 ~li~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p~- 489 (574)
.+...+...|++++|..+++++.+. +..| ...++..+...|...|++++|.+.++++.+. ...+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4445555555555555555554432 1011 2234555555566666666666666655532 00111
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 490 ------DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 490 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
...+..+...+...+.+.+|...++..... .+.+..++..+..+|.+.|++++|..++++.++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 112222233334445555566666665543 1224466777778888888888888888877653
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=2.4e-10 Score=111.66 Aligned_cols=235 Identities=10% Similarity=-0.010 Sum_probs=136.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHcccC--CCCC----HHH
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSN----TFNSLLIFVIKSCSFDKGWLFFSENRCK--VELD----VYS 177 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~ 177 (574)
.+..+...+...|++++|...+++.++.....+.. +++.+...+...|++++|...+++.... ...+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44555667778999999999999988754222222 4555666777888888888888876543 1122 233
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----Chh
Q 043999 178 FGILIKGCCEAGDLNKAFEVLNQLEEM----GFS--P-NVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVA----TQH 246 (574)
Q Consensus 178 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ 246 (574)
+..+...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566777777888888888888776542 211 2 23355566677777788888887777765432211 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHH
Q 043999 247 TYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSL-YTYN-----CLIHEYCNEGKVSEGFKLFDEMRHREVACN---VVT 317 (574)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~ 317 (574)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|+.++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 4555666666777777777777666532111111 1111 122335566666666666666544322111 113
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 318 YNTLICGLCKEMRVQEAERLLDQMK 342 (574)
Q Consensus 318 ~~~li~~~~~~~~~~~A~~~~~~m~ 342 (574)
+..+...+...|++++|...++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555566666655555543
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=2.8e-10 Score=111.17 Aligned_cols=300 Identities=12% Similarity=0.047 Sum_probs=203.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HH
Q 043999 247 TYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLY----TYNCLIHEYCNEGKVSEGFKLFDEMRHREVA-CNV----VT 317 (574)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~----~~ 317 (574)
........+...|++++|...+++........+.. +++.+...+...|++++|.+.+++....... .+. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445566778999999999999988754222222 4566777888899999999999887653111 122 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHH
Q 043999 318 YNTLICGLCKEMRVQEAERLLDQMKMA----GIS--P-NVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQS--P--SVV 386 (574)
Q Consensus 318 ~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~--~~~ 386 (574)
+..+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566777888899999999999887653 222 2 2345666788888999999999999988764221 1 235
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-hHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHH
Q 043999 387 TYNVLIRAFSKAGNSKMASDLVREMEERGITPSE-VTYT-----ILIDSFVRSDDMEKAFEMYSLMQKSGFSPD---VYT 457 (574)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~ 457 (574)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6777788888999999999999988754212111 1121 233447788999999999988775432211 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043999 458 YGVLIHGLCMKGNMKEASKLFNSMWET----KLEPND-VVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTI 532 (574)
Q Consensus 458 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 532 (574)
+..+...+...|++++|...+++.... +..++. .++..+..++...|+.++|...+++..... +.. -.+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~~----g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NRT----GFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH----CCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--ccc----cHH
Confidence 567778888899999999999887653 211222 356677788888999999999999988741 111 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043999 533 GVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
..+...| +....+++.+...
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHcc--HHHHHHHHHHHhC
Confidence 3344445 6777788888765
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=1.1e-10 Score=114.39 Aligned_cols=228 Identities=13% Similarity=0.047 Sum_probs=146.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CC-CHHHHHH
Q 043999 322 ICGLCKEMRVQEAERLLDQMKMAGI-SPN----VITYNKLIDGFCDAGETDKAFRLFNQLKSN----GQ-SP-SVVTYNV 390 (574)
Q Consensus 322 i~~~~~~~~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~-~~~~~~~ 390 (574)
...+...|++++|+..|+++.+... .++ ..++..+...|...|+++.|...+++..+. +. .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445567777777777777654310 111 345566677777777777777777766542 10 11 1345666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 043999 391 LIRAFSKAGNSKMASDLVREMEER----GITP-SEVTYTILIDSFVRSDDMEKAFEMYSLMQK-----SGFSPDVYTYGV 460 (574)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 460 (574)
+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 777777788888887777776542 1111 124566777778888888888888887765 32 333567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 043999 461 LIHGLCMKGNMKEASKLFNSMWETKL---EP-NDVVYNMMIFGYCKEGN---SYRALRLLGEMNEKGLVPN-IASYSSTI 532 (574)
Q Consensus 461 li~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 532 (574)
+...+.+.|++++|...+++..+... .| ....+..+...+...|+ +++|+..+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 88888888888888888888776421 12 23345556666667777 67777777652 22222 34566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 043999 533 GVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~ 553 (574)
..|...|++++|..++++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888764
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=3.6e-11 Score=104.28 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++....+.+..++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456666677777777777777777766543 234556666666666666666666666666555555666666666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGF 265 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (574)
...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.+++..+.... +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665542 224455555666666666666666666665554322 3445555555555555555555
Q ss_pred HHHHHHHH
Q 043999 266 EFYEKMQL 273 (574)
Q Consensus 266 ~~~~~~~~ 273 (574)
+.+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.8e-10 Score=112.80 Aligned_cols=229 Identities=8% Similarity=-0.029 Sum_probs=154.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CC-ChhhHH
Q 043999 286 LIHEYCNEGKVSEGFKLFDEMRHREVA-C----NVVTYNTLICGLCKEMRVQEAERLLDQMKMAGI-----SP-NVITYN 354 (574)
Q Consensus 286 li~~~~~~g~~~~A~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----~~-~~~~~~ 354 (574)
....+...|++++|...|++..+.-.. + ...++..+...|...|++++|...+++..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344556777788888777776543110 1 234666777777788888888887777654210 11 234567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHhHHH
Q 043999 355 KLIDGFCDAGETDKAFRLFNQLKSN----GQSP-SVVTYNVLIRAFSKAGNSKMASDLVREMEE-----RGITPSEVTYT 424 (574)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 424 (574)
.+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7777888888888888888776542 1111 134567777888888888888888888776 32 22356677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 043999 425 ILIDSFVRSDDMEKAFEMYSLMQKSG----FSPDVYTYGVLIHGLCMKGN---MKEASKLFNSMWETKLEP-NDVVYNMM 496 (574)
Q Consensus 425 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l 496 (574)
.+...+.+.|++++|...+++..+.. -+.....+..+...+...++ +++|+..+++.. ..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHH
Confidence 78888888999999999988876531 11223345566666777777 777777777632 222 24456778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043999 497 IFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 497 i~~~~~~g~~~~A~~~~~~m~~ 518 (574)
...|...|++++|.+.|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999988865
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=2.7e-11 Score=127.11 Aligned_cols=168 Identities=12% Similarity=0.034 Sum_probs=151.5
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILI 182 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 182 (574)
|.++.+|+.|...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|++.|++.....|.+..+|+.+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4557899999999999999999999999999864 335889999999999999999999999999887788999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQK 262 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 262 (574)
..|.+.|++++|++.|++..+... -+...|+.+..+|.+.|++++|++.|++..+..+. +...|..+...+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 999999999999999999998642 25789999999999999999999999999887654 6789999999999999999
Q ss_pred HHHHHHHHHHH
Q 043999 263 DGFEFYEKMQL 273 (574)
Q Consensus 263 ~a~~~~~~~~~ 273 (574)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888764
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=1.8e-10 Score=99.80 Aligned_cols=164 Identities=14% Similarity=0.066 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 043999 142 NTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCC 221 (574)
Q Consensus 142 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 221 (574)
..+..+...+...|++++|...|+++....+.+..++..++..+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455566677777888888888877776666677777777777777777777777777776653 235566667777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043999 222 KNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFK 301 (574)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 301 (574)
..|++++|.+.++++.+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776655332 45556666666666666666666666665542 2244555566666666666666666
Q ss_pred HHHHHHh
Q 043999 302 LFDEMRH 308 (574)
Q Consensus 302 ~~~~m~~ 308 (574)
.++.+.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=2.3e-10 Score=103.25 Aligned_cols=202 Identities=12% Similarity=0.060 Sum_probs=155.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 043999 348 PNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILI 427 (574)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 427 (574)
.|+..+......+...|++++|.+.|++..+....++...+..+...+...|++++|...+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888888999999999999999999988754467788888899999999999999999999887432 567788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 043999 428 DSFVRSDDMEKAFEMYSLMQKSGFSPDV-------YTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN---DVVYNMMI 497 (574)
Q Consensus 428 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li 497 (574)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|+++++. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998764 3444 45777888888999999999999999875 454 46677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043999 498 FGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLY 563 (574)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 563 (574)
.+|...| ..+++++...+ ..+...|.... ....+.+++|...+++.++. .|+....
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~ 216 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEI 216 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHH
Confidence 7776554 44556665542 23444444433 33457789999999999976 6765543
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=9.8e-11 Score=122.88 Aligned_cols=165 Identities=9% Similarity=0.001 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043999 141 SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGC 220 (574)
Q Consensus 141 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 220 (574)
..+++.|...+.+.|++++|++.|++..+..|.+..+|+.+...|.+.|++++|++.|++..+... -+...|..+..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 556666777777777777777777776665566667777777777777777777777777666431 2455666677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043999 221 CKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGF 300 (574)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 300 (574)
.+.|++++|++.|++..+.++. +..+|..+...|.+.|++++|++.|++.++.. +-+...+..+...|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 7777777777777766665433 45566666666666666666666666666542 124556666666666666666666
Q ss_pred HHHHHHHh
Q 043999 301 KLFDEMRH 308 (574)
Q Consensus 301 ~~~~~m~~ 308 (574)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=4.1e-10 Score=101.50 Aligned_cols=207 Identities=11% Similarity=0.005 Sum_probs=162.3
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
.++..|..+...+.+.|++++|+..|++.++...+++...+..+..++.+.|++++|++.|++.....|.+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678999999999999999999999999987644778888889999999999999999999999887888999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHH
Q 043999 184 GCCEAGDLNKAFEVLNQLEEMGFSPNV-------VIYTSLIDGCCKNGDIERAKMLFRKIGELGLVAT---QHTYTVLIC 253 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~ 253 (574)
.+...|++++|.+.+++..+... .+. ..|..+...+.+.|++++|++.|++..+.+ |+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 99999999999999999988532 234 457888889999999999999999998864 43 467777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043999 254 GLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLI 322 (574)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 322 (574)
.+...| ...++++...+ ..+...|.... ....+.+++|...|++..+..+. +..+...+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~ 221 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 776554 34455555443 22444444443 23456789999999999887554 455544443
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=8.6e-11 Score=109.59 Aligned_cols=156 Identities=14% Similarity=0.119 Sum_probs=96.8
Q ss_pred hcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC--------CCCCHHHHHHHH
Q 043999 118 KSRLSDQALFYFHQMLDS-------GVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK--------VELDVYSFGILI 182 (574)
Q Consensus 118 ~~g~~~~A~~~~~~~~~~-------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~li 182 (574)
..|++++|+..|++.++. +.+....++..+...+...|++++|...|+++... .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 356666666666665541 21223556667777777788888887777766532 233455677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHC------CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhH
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEM------GF-SPNVVIYTSLIDGCCKNGDIERAKMLFRKIGEL------GLVA-TQHTY 248 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~ 248 (574)
..|...|++++|.+.+++..+. .. +....++..+...|...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777778888777777776653 11 123456666777777777777777777776543 1011 23456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 249 TVLICGLFKNGLQKDGFEFYEKMQL 273 (574)
Q Consensus 249 ~~li~~~~~~g~~~~a~~~~~~~~~ 273 (574)
..+...+...|++++|.+.+++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666666554
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=1.2e-10 Score=108.53 Aligned_cols=227 Identities=15% Similarity=0.029 Sum_probs=155.5
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 043999 327 KEMRVQEAERLLDQMKM-------AGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSN------GQSP-SVVTYNVLI 392 (574)
Q Consensus 327 ~~~~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~~~-~~~~~~~li 392 (574)
..|++++|+.++++..+ ...+....++..+...|...|++++|...++++.+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666666554 222334567888999999999999999999988764 2222 356788889
Q ss_pred HHHHhcCChHHHHHHHHHHHHC------CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHH
Q 043999 393 RAFSKAGNSKMASDLVREMEER------GI-TPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKS------G-FSPDVYTY 458 (574)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~ 458 (574)
..+...|++++|...+++..+. .. +....++..+...+...|++++|...++++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 11 223567788888999999999999999988764 1 12235678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCC
Q 043999 459 GVLIHGLCMKGNMKEASKLFNSMWET-------KLEP-NDVVYNMMIFGYCKEGNS------YRALRLLGEMNEKGLVPN 524 (574)
Q Consensus 459 ~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~ 524 (574)
..+...|...|++++|.+.++++.+. ...+ ....|..+...+...+.. .++...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88899999999999999999998763 1122 223344444444333332 2222222222111 1223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 525 IASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 525 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
..++..+...|.+.|++++|..++++.++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888899999999999999999998753
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=7.4e-10 Score=104.02 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 043999 422 TYTILIDSFVRS-DDMEKAFEMYSLMQKSGFS-PD----VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPND----- 490 (574)
Q Consensus 422 ~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----- 490 (574)
++..+...|... |++++|...|++..+.... .+ ..++..+...+.+.|++++|+..|+++.+..+....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 344455555553 6666666555555432100 00 234555555666666666666666666554322111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043999 491 -VVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIA------SYSSTIGVLC--QDGKWPEAEVLLNQML 552 (574)
Q Consensus 491 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~m~ 552 (574)
..|..++.++...|++++|...+++..+ +.|+.. .+..++.++. ..+++++|...|+++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 1345555556666666666666666554 223211 1223333333 2345666666655554
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.21 E-value=5.8e-08 Score=97.69 Aligned_cols=203 Identities=8% Similarity=0.031 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043999 333 EAERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREME 412 (574)
Q Consensus 333 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 412 (574)
.+..+|++++... +.+...|-..+..+.+.|+++.|..++++.... +.+...|.. |....+.++. ++.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHH
Confidence 4556666666542 444556666666666667777777777776665 222222221 1111111111 22221
Q ss_pred HCC---------C---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHH
Q 043999 413 ERG---------I---TPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCM-KGNMKEASKLFN 479 (574)
Q Consensus 413 ~~~---------~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~ 479 (574)
+.- . ......|...+....+.+..+.|..+|+.. +.. ..+...|......-.. .++.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0 001244666666666778899999999988 321 2233444332222222 336999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 480 SMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 480 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
...+.... ++..|...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 345 ~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98875322 35556677777788899999999999873 2567888888877888999999998888874
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=1.3e-08 Score=93.67 Aligned_cols=183 Identities=13% Similarity=0.043 Sum_probs=115.2
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043999 334 AERLLDQMKMAGISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQ-SPSVVTYNVLIRAFSKAGNSKMASDLVREME 412 (574)
Q Consensus 334 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 412 (574)
|+..+++..+.+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 44555556677777777888888888777765543 1255666677777778888888888888776
Q ss_pred HCCCCC-----CHhHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 413 ERGITP-----SEVTYTILIDSF--VRSD--DMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWE 483 (574)
Q Consensus 413 ~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 483 (574)
+. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 44 245555555553 2223 778888888887654 34433333444467778888888888876554
Q ss_pred CC-----C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043999 484 TK-----L----EPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNI 525 (574)
Q Consensus 484 ~~-----~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 525 (574)
.. . .-++.++..+|......|+ +|.++++++.+. .|+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 21 0 1255566455555555666 777888888774 4553
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=1.5e-09 Score=101.92 Aligned_cols=95 Identities=12% Similarity=-0.125 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHcccCC--CCC----HH
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDS----GVRPR-SNTFNSLLIFVIKSCSFDKGWLFFSENRCKV--ELD----VY 176 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~ 176 (574)
.|......|...|++++|++.|++.++. |.+++ ..+++.+..+|.+.|++++|+..|++..... ..+ ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444455555666666666666655432 11111 2345555555555555555555555443220 001 22
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHHHHH
Q 043999 177 SFGILIKGCCEA-GDLNKAFEVLNQLE 202 (574)
Q Consensus 177 ~~~~li~~~~~~-g~~~~A~~~~~~m~ 202 (574)
+++.+...|... |++++|++.|++..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 344444444443 44444444444443
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=1.5e-08 Score=93.24 Aligned_cols=244 Identities=10% Similarity=-0.031 Sum_probs=148.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChh
Q 043999 113 IDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLN 192 (574)
Q Consensus 113 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 192 (574)
|+-..-.|++..++.-...+. ........-.+.+++...|+++.. ....|....+..+...+ . ++
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~--------~~~~~~~~a~~~la~~~-~-~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ--------DPTSKLGKVLDLYVQFL-D-TK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC--------CSSSTTHHHHHHHHHHH-T-TT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC--------CCCCHHHHHHHHHHHHh-c-cc--
Confidence 344446788888877333221 111223333345777777776642 11234444555444443 2 22
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 193 KAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGL-VATQHTYTVLICGLFKNGLQKDGFEFYEKM 271 (574)
Q Consensus 193 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 271 (574)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677777776654 34556666777888888888888888888766553 125667777788888888888888888888
Q ss_pred HHCCCCC-----CHhhHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 272 QLNGVSP-----SLYTYNCLIHE--YCNEG--KVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMK 342 (574)
Q Consensus 272 ~~~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 342 (574)
.+. .| +..+...++.+ ....| +..+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 764 45 24555555555 22233 7888888888876552 232233344447777888888888887655
Q ss_pred HC-----C----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 343 MA-----G----ISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSN 379 (574)
Q Consensus 343 ~~-----g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 379 (574)
+. . -+.|..+...+|......|+ +|.++++++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 42 0 03355555455555555665 677777777775
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=2.3e-09 Score=87.08 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHh
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCE 187 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 187 (574)
+|..+...+...|++++|..+|+++.+.+ +.+..++..+...+...|++++|...|+++....+.+...+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46777888888888888888888887654 33566677777777777777777777777766556666777777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 188 AGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGEL 239 (574)
Q Consensus 188 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 239 (574)
.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777776643 224556666777777777777777777766554
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=3.9e-09 Score=97.27 Aligned_cols=101 Identities=11% Similarity=-0.039 Sum_probs=68.3
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHcccCCC---CCHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR---SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVE---LDVY 176 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~ 176 (574)
+.++..+-.+...+.+.|++++|+..|+++++.. +.+ ..++..+..++.+.|++++|+..|++.....| ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456677777778888888888888888887753 112 45566667777777777777777777665422 2245
Q ss_pred HHHHHHHHHHh--------cCChhHHHHHHHHHHHC
Q 043999 177 SFGILIKGCCE--------AGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 177 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~ 204 (574)
++..+..++.+ .|++++|.+.|+++.+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 56666666666 67777777777776654
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=4.8e-09 Score=85.20 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043999 423 YTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCK 502 (574)
Q Consensus 423 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 502 (574)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++..... .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 4455555666666666666666665543 33455566666666666677777777666665432 245566666666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 503 EGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 503 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
.|++++|.++++++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777766642 334556666677777777777777777777654
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=3.2e-09 Score=97.91 Aligned_cols=195 Identities=7% Similarity=-0.070 Sum_probs=151.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC-HHhH
Q 043999 139 PRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELD---VYSFGILIKGCCEAGDLNKAFEVLNQLEEMGF-SPN-VVIY 213 (574)
Q Consensus 139 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 213 (574)
.+...+-.+...+.+.|++++|...|+++....|.+ ..++..+...|.+.|++++|.+.|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 356677778888999999999999999998876666 78899999999999999999999999998532 112 4567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHhcCCHHHHHHHH
Q 043999 214 TSLIDGCCK--------NGDIERAKMLFRKIGELGLVATQHTY-----------------TVLICGLFKNGLQKDGFEFY 268 (574)
Q Consensus 214 ~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~ 268 (574)
..+..++.+ .|++++|+..|+++.+..+. +.... ..+...|.+.|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 788888888 99999999999999886543 33344 55688999999999999999
Q ss_pred HHHHHCCCCC--CHhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 043999 269 EKMQLNGVSP--SLYTYNCLIHEYCNE----------GKVSEGFKLFDEMRHREVACN--VVTYNTLICGLCKEMRVQEA 334 (574)
Q Consensus 269 ~~~~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A 334 (574)
+++.+..... ....+..+..+|... |++++|...|+++.+..+... ......+...+.+.++++++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 9998763221 234677788888866 899999999999988754422 23445555555555555543
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=2.8e-09 Score=91.62 Aligned_cols=163 Identities=14% Similarity=0.032 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH-H
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG-C 185 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~-~ 185 (574)
..+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|+++....| +...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 346677778888888889988888877653 33567788888888888888888888888776655 55544433322 1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVA-TQHTYTVLICGLFKNGLQKDG 264 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a 264 (574)
...++..+|.+.+++..+... .+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222334456777777776432 246677777788888888888888888877765432 345677777777777777777
Q ss_pred HHHHHHHH
Q 043999 265 FEFYEKMQ 272 (574)
Q Consensus 265 ~~~~~~~~ 272 (574)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=7.8e-08 Score=89.47 Aligned_cols=171 Identities=9% Similarity=-0.013 Sum_probs=93.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHcccCCCCCHHHHHHHHHHH----Hhc---CCh
Q 043999 121 LSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSC--SFDKGWLFFSENRCKVELDVYSFGILIKGC----CEA---GDL 191 (574)
Q Consensus 121 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~ 191 (574)
..++|+..++.++..+ +-+..+|+.-..++...| ++++++..++.+....|.+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3356777777777653 224555666666666666 677777777766666666666666665555 444 556
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC------HHH
Q 043999 192 NKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIE--RAKMLFRKIGELGLVATQHTYTVLICGLFKNGL------QKD 263 (574)
Q Consensus 192 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~ 263 (574)
+++++.++++.+... .|..+|+.-.-.+.+.|+++ ++++.++++.+.++. |..+|+.-...+.+.+. +++
T Consensus 127 ~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 666666666665432 25555555555555556555 666666666555443 44555544444444443 444
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 043999 264 GFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGK 295 (574)
Q Consensus 264 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 295 (574)
+++.+++++... +-|...|+-+-..+.+.|+
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 444444444332 1234444444444444443
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=4.6e-09 Score=92.99 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHHHhcCChhHHHHHHHHcccC
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR-SNTFNS----------------LLIFVIKSCSFDKGWLFFSENRCK 170 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~----------------ll~~~~~~g~~~~A~~~~~~~~~~ 170 (574)
.+......+.+.|++++|+..|++.++.. |+ ...+.. +..++.+.|++++|+..|++....
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34455667778899999999999988753 33 334443 444444444444444444444444
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 171 VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 171 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
.|.+..++..+...+...|++++|.+.|++..+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=6.6e-09 Score=92.00 Aligned_cols=135 Identities=11% Similarity=0.092 Sum_probs=79.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043999 426 LIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGN 505 (574)
Q Consensus 426 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 505 (574)
+..++.+.|++++|...|++..+.. +.+...+..+...+...|++++|+..|+++++..+. +..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 5666677777777777777776653 445666777777777777777777777777765332 56666666666655443
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043999 506 --SYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNIL 566 (574)
Q Consensus 506 --~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 566 (574)
.+.+...++.... ..|....+.....++...|++++|...|++.++. .|+......|
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 3344444444432 2222223333444555667777777777777643 5665554444
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=9.7e-08 Score=88.85 Aligned_cols=233 Identities=10% Similarity=-0.009 Sum_probs=186.6
Q ss_pred ChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH----Hhc---CCH
Q 043999 156 SFDKGWLFFSENRCKVELDVYSFGILIKGCCEAG--DLNKAFEVLNQLEEMGFSPNVVIYTSLIDGC----CKN---GDI 226 (574)
Q Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---g~~ 226 (574)
..++|+.+++.+....|.+..+|+.-...+...| +++++++.++.+.....+ +..+|+.--..+ .+. +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 3468899999988878889999999999999999 999999999999986533 566777665555 555 789
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC------HHH
Q 043999 227 ERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQK--DGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGK------VSE 298 (574)
Q Consensus 227 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~------~~~ 298 (574)
++++++++++.+.++. +..+|+.-.-.+.+.|.++ ++++.++++++.... |-..|+.-...+.+.+. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999999988765 8888988888888899888 999999999987543 77788877777777776 899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043999 299 GFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQE-AERLLDQMKMAG--ISPNVITYNKLIDGFCDAGETDKAFRLFNQ 375 (574)
Q Consensus 299 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 375 (574)
+++.++.+....+. |...|+-+-..+.+.|+..+ +..+.+.+.+.+ -+.+...+..+.+.|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999988777 99999999888888888444 555666665432 245778899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHH
Q 043999 376 LKSNGQSPSVVTYNVLI 392 (574)
Q Consensus 376 ~~~~g~~~~~~~~~~li 392 (574)
+.+.--+.....|+..+
T Consensus 284 l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHTTCGGGHHHHHHHH
T ss_pred HHhccChHHHHHHHHHH
Confidence 98731122444555443
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=2.6e-09 Score=112.58 Aligned_cols=171 Identities=14% Similarity=0.005 Sum_probs=93.6
Q ss_pred HhcCChhHHHHHHHHcc--------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 043999 152 IKSCSFDKGWLFFSENR--------CKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKN 223 (574)
Q Consensus 152 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 223 (574)
...|++++|++.+++.. ...+.+...+..+...+.+.|++++|.+.|++..+... .+...|..+..++.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 45566666666666655 33455555666666666666666666666666655421 2445555666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 043999 224 GDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLF 303 (574)
Q Consensus 224 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 303 (574)
|++++|++.|++..+..+. +...|..+..++.+.|++++ ++.|++..+.. +.+...|..+...+.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666554432 44555555566666666666 66665555442 124445555555566666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh
Q 043999 304 DEMRHREVACNVVTYNTLICGLCK 327 (574)
Q Consensus 304 ~~m~~~~~~~~~~~~~~li~~~~~ 327 (574)
++..+..+. +...+..+..++..
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HhhcccCcc-cHHHHHHHHHHHHc
Confidence 555444322 33444444444433
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=2.6e-09 Score=112.61 Aligned_cols=173 Identities=7% Similarity=-0.122 Sum_probs=147.4
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhc
Q 043999 117 LKSRLSDQALFYFHQML--------DSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEA 188 (574)
Q Consensus 117 ~~~g~~~~A~~~~~~~~--------~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 188 (574)
...|++++|++.|++.+ +.. +.+...+..+...+.+.|++++|+..|+++....+.+...|..+...+.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 432 346778888999999999999999999999888788999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 043999 189 GDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFY 268 (574)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 268 (574)
|++++|.+.|++..+... .+...+..+..++.+.|++++ ++.|++..+.++. +...|..+..++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998642 267789999999999999999 9999999887654 6788999999999999999999999
Q ss_pred HHHHHCCCCCC-HhhHHHHHHHHHhcCC
Q 043999 269 EKMQLNGVSPS-LYTYNCLIHEYCNEGK 295 (574)
Q Consensus 269 ~~~~~~g~~p~-~~~~~~li~~~~~~g~ 295 (574)
++..+. .|+ ...+..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 998875 444 5677777777766554
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.03 E-value=1.5e-06 Score=87.31 Aligned_cols=357 Identities=10% Similarity=-0.031 Sum_probs=204.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHcccC---CCCCHHHHHHHHHHHH----hcCCh
Q 043999 120 RLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCS-FDKGWLFFSENRCK---VELDVYSFGILIKGCC----EAGDL 191 (574)
Q Consensus 120 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~~~~li~~~~----~~g~~ 191 (574)
|+++.+..+|++.+.. .|+...|...+....+.+. .+....+|+..... .+.+...|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7788888888888774 4688888888777766653 34556677766553 2446677777776544 24567
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 192 NKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKM 271 (574)
Q Consensus 192 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 271 (574)
+.+.++|++.+......-...|...... .+......+..+..+.. +.+..|...++.+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHH
Confidence 7788888888763111001112111111 11111112222221111 1222233333332
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 272 QLNGVSPSLYTYNCLIHEYCNEG--K-----VSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMA 344 (574)
Q Consensus 272 ~~~g~~p~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 344 (574)
...-...+...|...+..-...+ - .+.+..+|+++....+. +...|...+..+.+.|+.+.|..++++....
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 21100012334444444322211 0 23456777777765333 5777887888788888888888888888876
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043999 345 GISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSNG---------Q---SPSVVTYNVLIRAFSKAGNSKMASDLVREME 412 (574)
Q Consensus 345 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 412 (574)
+.+...+.. |....+.++. ++.+.+.- . ......|...+....+.+..+.|..+|.+.
T Consensus 243 --P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A- 312 (493)
T 2uy1_A 243 --SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL- 312 (493)
T ss_dssp --CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-
T ss_pred --CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 333332221 2221111111 22222110 0 011245666777777788899999999999
Q ss_pred HCCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 043999 413 ERGITPSEVTYTILIDSFVR-SDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDV 491 (574)
Q Consensus 413 ~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 491 (574)
+. ...+...|......-.. .++.+.|..+|+...+.. +.++..+...++...+.|+.+.|..+|+.+. ....
T Consensus 313 ~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~ 385 (493)
T 2uy1_A 313 GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSR 385 (493)
T ss_dssp TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHH
T ss_pred hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHH
Confidence 32 12244444432222222 336999999999988753 3345556667787888999999999999973 2577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 492 VYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 492 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
.|...+.--...|+.+.+..+++++.+
T Consensus 386 lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 386 MWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888877888999999998888874
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=5.2e-08 Score=86.41 Aligned_cols=176 Identities=13% Similarity=0.048 Sum_probs=91.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC----CHHHHHHHHH
Q 043999 369 AFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSD----DMEKAFEMYS 444 (574)
Q Consensus 369 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~ 444 (574)
|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 44444445555555555555555555555443 33344444444444 3 5555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 043999 445 LMQKSGFSPDVYTYGVLIHGLCM----KGNMKEASKLFNSMWETKLE-PNDVVYNMMIFGYCK----EGNSYRALRLLGE 515 (574)
Q Consensus 445 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 515 (574)
+..+.| +...+..|...|.. .+++++|.+.|++..+.+.. .+...+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555433 34444555555544 55666666666666554321 014555566666655 5566666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 043999 516 MNEKGLVPNIASYSSTIGVLCQD-G-----KWPEAEVLLNQMLKLGL 556 (574)
Q Consensus 516 m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 556 (574)
..+. .++...+..+...|... | +.++|..++++..+.|.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6654 12333445555555432 2 56666666666666553
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=1.4e-08 Score=94.78 Aligned_cols=162 Identities=7% Similarity=-0.067 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH-HHHHH
Q 043999 142 NTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTS-LIDGC 220 (574)
Q Consensus 142 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~ 220 (574)
..+..+...+.+.|++++|...|++.....|.+...+..+...+.+.|++++|.+.++++.+. .|+...... ....+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHH
Confidence 344444455555566666665555555555555555555555566666666666665555443 233222221 12224
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHH
Q 043999 221 CKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSP-SLYTYNCLIHEYCNEGKVSEG 299 (574)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 299 (574)
.+.++.++|...+++.....+. +...+..+...+...|++++|++.|.++.+..... +...+..++..+...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 4455555555555555554432 45555555566666666666666666555542111 134555566666666666666
Q ss_pred HHHHHHH
Q 043999 300 FKLFDEM 306 (574)
Q Consensus 300 ~~~~~~m 306 (574)
...|++.
T Consensus 275 ~~~~r~a 281 (287)
T 3qou_A 275 ASXYRRQ 281 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=6.4e-09 Score=89.36 Aligned_cols=161 Identities=5% Similarity=-0.109 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH-HHh
Q 043999 144 FNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDG-CCK 222 (574)
Q Consensus 144 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~ 222 (574)
+..+...+.+.|++++|...|++.....|.+...+..+...+.+.|++++|.+.+++..+.. |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44556677788888888888888877767788888888888888888888888888876643 343333222211 122
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHH
Q 043999 223 NGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSP-SLYTYNCLIHEYCNEGKVSEGFK 301 (574)
Q Consensus 223 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~ 301 (574)
.++..+|...+++..+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22333466667766665433 45666667777777777777777777776653222 24456666677777777777776
Q ss_pred HHHHHH
Q 043999 302 LFDEMR 307 (574)
Q Consensus 302 ~~~~m~ 307 (574)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=4.6e-08 Score=86.78 Aligned_cols=175 Identities=16% Similarity=0.049 Sum_probs=80.7
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHH
Q 043999 194 AFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNG----LQKDGFEFYE 269 (574)
Q Consensus 194 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~ 269 (574)
|.+.|++..+.| +...+..|...|...+++++|++.|++..+.| +...+..|...|.. + +.++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444432 44444445555555555555555555554433 33444444444444 3 4555555555
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 043999 270 KMQLNGVSPSLYTYNCLIHEYCN----EGKVSEGFKLFDEMRHREVA-CNVVTYNTLICGLCK----EMRVQEAERLLDQ 340 (574)
Q Consensus 270 ~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~ 340 (574)
+..+.| +...+..|...|.. .+++++|.+.|++..+.+.. .++..+..|...|.. .+++++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554432 33444444444443 44555555555555444321 013444444444444 4455555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 043999 341 MKMAGISPNVITYNKLIDGFCDA-G-----ETDKAFRLFNQLKSNG 380 (574)
Q Consensus 341 m~~~g~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~g 380 (574)
..+. +.+...+..|..+|... | ++++|.++|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5443 12333444444444432 1 4555555555554443
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=1.2e-09 Score=91.02 Aligned_cols=143 Identities=13% Similarity=-0.002 Sum_probs=82.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhH
Q 043999 114 DAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNK 193 (574)
Q Consensus 114 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 193 (574)
..+...|++++|+..+++..... +.+...+-.+...|.+.|++++|++.|++.....|.+..+|..+...|.+.|++++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 34445566677777666665431 11233444566666666777777666666666556666666666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043999 194 AFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKML-FRKIGELGLVATQHTYTVLICGLFKNG 259 (574)
Q Consensus 194 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 259 (574)
|+..|++..+... -+..++..+...|.+.|++++|.+. +++..+..+. ++.+|......+...|
T Consensus 84 A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666666665431 1455666666666666666555443 3555554432 4445555555544444
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=3.3e-08 Score=88.69 Aligned_cols=185 Identities=10% Similarity=-0.051 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCH---HHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVR-PR-SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDV---YSFGI 180 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 180 (574)
+..+..+...+.+.|++++|+..|+++++.... |. ...+..+..++.+.|++++|+..|+++....|.+. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445667788899999999999999999875321 11 35677788899999999999999999887644443 25555
Q ss_pred HHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043999 181 LIKGCCE------------------AGDLNKAFEVLNQLEEMGFSPNVV-IYTSLIDGCCKNGDIERAKMLFRKIGELGL 241 (574)
Q Consensus 181 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 241 (574)
+..++.+ .|++++|...|+++.+.. |+.. .+...... ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH----
Confidence 6665554 456666666666666532 3221 11111000 00000000
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043999 242 VATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPS----LYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVA 312 (574)
Q Consensus 242 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 312 (574)
.....+...|.+.|++++|+..|+++++.. |+ ...+..+..+|.+.|+.++|.+.++.+...++.
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 012345677888899999999999888763 33 246777888899999999999999888776544
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=2.1e-09 Score=89.52 Aligned_cols=121 Identities=11% Similarity=-0.052 Sum_probs=61.9
Q ss_pred HHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 043999 151 VIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAK 230 (574)
Q Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 230 (574)
+...|++++|++.++......|.+...+..+...|.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHH
Confidence 33445555555555555444333444445555555555555555555555555421 24445555555555555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHHH
Q 043999 231 MLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEF-YEKMQL 273 (574)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~ 273 (574)
..|++..+.++. +..+|..+...|.+.|+.++|.+. +++..+
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555554332 344555555555555555444333 344443
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=7.1e-08 Score=86.47 Aligned_cols=186 Identities=9% Similarity=-0.045 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CH-HhHHH
Q 043999 141 SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELD---VYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSP-NV-VIYTS 215 (574)
Q Consensus 141 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-~~~~~ 215 (574)
...+..+...+.+.|++++|...|+++....|.+ ..++..++.++.+.|++++|++.|+++.+..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556667788888888888888877653333 3567778888888888888888888887753221 11 13444
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043999 216 LIDGCCK------------------NGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVS 277 (574)
Q Consensus 216 li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 277 (574)
+..++.+ .|++++|...|+++.+..+. +...+....... .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~~----- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHHH-----
Confidence 4444443 45666666666666654322 222222111100 0000000
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 278 PSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACN--VVTYNTLICGLCKEMRVQEAERLLDQMKMAG 345 (574)
Q Consensus 278 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 345 (574)
.....+...|.+.|++++|...|+++.+..+... ...+..+..++.+.|+.++|...++.+...+
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123567789999999999999999988754421 2568889999999999999999999988874
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=1.5e-08 Score=94.67 Aligned_cols=167 Identities=10% Similarity=-0.021 Sum_probs=114.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHH
Q 043999 172 ELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHT-YTV 250 (574)
Q Consensus 172 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 250 (574)
+.+...+..+...+.+.|++++|...|++..+... -+...+..+...+.+.|++++|...++++.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 45566677777777778888888888887776532 255677777777888888888888887776554 33322 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 043999 251 LICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVAC-NVVTYNTLICGLCKEM 329 (574)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~ 329 (574)
....+.+.++.++|...+++..... +.+...+..+...|...|++++|...|+++.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2233556677777777777777653 3356677777777888888888888888777765442 2566777777777778
Q ss_pred CHHHHHHHHHHHH
Q 043999 330 RVQEAERLLDQMK 342 (574)
Q Consensus 330 ~~~~A~~~~~~m~ 342 (574)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8777777777654
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=2.9e-08 Score=102.74 Aligned_cols=154 Identities=10% Similarity=-0.090 Sum_probs=115.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043999 119 SRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVL 198 (574)
Q Consensus 119 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 198 (574)
.|++++|++.|++.++.. +.+...+..+...+.+.|++++|.+.|++.....+.+..++..+...|.+.|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 578899999999988763 3357788888889999999999999999988877788889999999999999999999999
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 043999 199 NQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKN---GLQKDGFEFYEKMQLNG 275 (574)
Q Consensus 199 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~g 275 (574)
++..+.. +.+...+..+...|.+.|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9988764 235778888999999999999999999998876543 677888888889888 99999999999888764
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=3.1e-08 Score=102.52 Aligned_cols=148 Identities=9% Similarity=-0.030 Sum_probs=126.7
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHH
Q 043999 102 PVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGIL 181 (574)
Q Consensus 102 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (574)
.+.+...|..+...|.+.|++++|++.|++.++.. +.+..++..+...+.+.|++++|.+.|++.....+.+...+..+
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 97 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL 97 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34567899999999999999999999999999874 34688899999999999999999999999988778889999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKN---GDIERAKMLFRKIGELGLVATQHTYTVLI 252 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li 252 (574)
...|.+.|++++|.+.+++..+... .+...+..+...+... |+.++|.+.+++..+.+.. +...|..+.
T Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 169 (568)
T 2vsy_A 98 GHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG-AVEPFAFLS 169 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC-CSCHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc-ccChHHHhC
Confidence 9999999999999999999988642 3677889999999999 9999999999999887644 344444443
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=4.5e-08 Score=92.48 Aligned_cols=130 Identities=10% Similarity=-0.011 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHH
Q 043999 387 TYNVLIRAFSKAGNSKMASDLVREMEER----GITP-SEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGF---SP--DVY 456 (574)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~ 456 (574)
+|+.+...|.+.|++++|...+++..+. |-.. -..++..+...|.. |++++|...|++..+... .+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4445555555566666666666554432 1000 12345555566656 777777776666543210 00 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 457 TYGVLIHGLCMKGNMKEASKLFNSMWET----KLEPN-DVVYNMMIFGYCKEGNSYRALRLLGEMN 517 (574)
Q Consensus 457 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 517 (574)
++..+...|.+.|++++|+..|++.++. +..+. ...+..++.++...|++++|...|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5666667777777777777777776652 11111 2245555566666677777777777776
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=1.3e-06 Score=82.10 Aligned_cols=150 Identities=7% Similarity=-0.106 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSC-SFDKGWLFFSENRCKVELDVYSFGILIKGCC 186 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 186 (574)
+++.+-....+.+..++|++++++++..+ +-+..+|+.--.++...| .+++++.+++.+....|.+..+|+.-...+.
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 33444444444455567778777777754 224556676666666666 4777777777777666777777777766666
Q ss_pred hc-C-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 043999 187 EA-G-DLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIE--------RAKMLFRKIGELGLVATQHTYTVLICGLF 256 (574)
Q Consensus 187 ~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 256 (574)
+. + +++++++.++++.+... .|..+|+.-.-.+.+.|.++ ++++.++++.+.++. |..+|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 65 5 66777777777766532 25556655555555544444 566666666555443 5555555555554
Q ss_pred hcCC
Q 043999 257 KNGL 260 (574)
Q Consensus 257 ~~g~ 260 (574)
+.++
T Consensus 213 ~l~~ 216 (349)
T 3q7a_A 213 SRPG 216 (349)
T ss_dssp TSTT
T ss_pred hccc
Confidence 4443
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=1.4e-07 Score=89.07 Aligned_cols=225 Identities=9% Similarity=-0.017 Sum_probs=142.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043999 118 KSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIK-SCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFE 196 (574)
Q Consensus 118 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 196 (574)
..|++++|.+++++..+.. +.. +.+ .+++++|...|++. +..|...|++++|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHH
Confidence 4577888888888776532 111 112 46677777666553 345667788888877
Q ss_pred HHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHH
Q 043999 197 VLNQLEEM----GFSP-NVVIYTSLIDGCCKNGDIERAKMLFRKIGEL----GLV-ATQHTYTVLICGLFKNGLQKDGFE 266 (574)
Q Consensus 197 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~ 266 (574)
.|.+..+. |-.+ -..+|+.+...|.+.|++++|+..|++..+. |-. ....++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77776542 1110 1346777777888888888888888776432 111 113467777777777 88888888
Q ss_pred HHHHHHHCCCC---C--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 043999 267 FYEKMQLNGVS---P--SLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR----EVACN-VVTYNTLICGLCKEMRVQEAER 336 (574)
Q Consensus 267 ~~~~~~~~g~~---p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~~~~~A~~ 336 (574)
.|++..+.... + ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877643111 0 1356777888888888888888888887653 21111 2356666777777889999999
Q ss_pred HHHHHHHCCCCCCh------hhHHHHHHHHHhcCCHHHHHHH
Q 043999 337 LLDQMKMAGISPNV------ITYNKLIDGFCDAGETDKAFRL 372 (574)
Q Consensus 337 ~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~ 372 (574)
.|++.. . .|+. .....++..+ ..|+.+.+.++
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 988887 4 2221 1244455555 56777766664
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=2.4e-07 Score=82.06 Aligned_cols=132 Identities=8% Similarity=-0.119 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
...+..+...+.+.|++++|+..|++.+ .|+..++..+...+.+.|++++|+..|++.....+.+..++..+...+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3456778888889999999999998874 467888999999999999999999999998877778889999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCC--------------C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFS--------------P-NVVIYTSLIDGCCKNGDIERAKMLFRKIGELGL 241 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 241 (574)
.+.|++++|.+.|++..+.... | ....+..+...+.+.|++++|.+.|++..+..+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999998875321 1 126778888889999999999999999887654
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.81 E-value=2e-06 Score=80.82 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=183.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHH
Q 043999 121 LSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAG-DLNKAFEVLN 199 (574)
Q Consensus 121 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~ 199 (574)
++.+|...++.+++.+ +..++|+++++.+....|.+..+|+.-...+...| +++++++.++
T Consensus 52 ~y~~~~~~~r~~~~~~------------------e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~ 113 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE------------------EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMN 113 (349)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4556666666665543 34568899999998888889999999999998888 5999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhc-C-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHH
Q 043999 200 QLEEMGFSPNVVIYTSLIDGCCKN-G-DIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQK--------DGFEFYE 269 (574)
Q Consensus 200 ~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~ 269 (574)
.+.....+ +..+|+.-...+.+. + ++++++++++++.+.++. +..+|+.-.-.+.+.|.++ ++++.++
T Consensus 114 ~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 114 EFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 99987543 777888888887776 7 899999999999988765 7788887776666666666 9999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-----------
Q 043999 270 KMQLNGVSPSLYTYNCLIHEYCNEGK-------VSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRV----------- 331 (574)
Q Consensus 270 ~~~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~----------- 331 (574)
++++..+ -|...|+.....+.+.+. ++++++.+++.....+. |...|+-+-..+.+.|+.
T Consensus 192 k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 192 EMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccccc
Confidence 9998754 378888888888877776 78999999999888766 888998877777766653
Q ss_pred ---------HHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 332 ---------QEAERLLDQMKMAG-----ISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSN 379 (574)
Q Consensus 332 ---------~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 379 (574)
.+.......+...+ -.++...+..|++.|...|+.++|.++++.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 33444444443322 1467888899999999999999999999999754
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=3.8e-07 Score=80.75 Aligned_cols=129 Identities=12% Similarity=-0.062 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043999 386 VTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGL 465 (574)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 465 (574)
..+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345566777788888888888887763 4577788888888888888888888888887764 45667788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 466 CMKGNMKEASKLFNSMWETKLEP---------------NDVVYNMMIFGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~~~~p---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
...|++++|.+.|+++.+..... ....+..+..+|...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888888888753221 1267777888888888888888888888874
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=2e-06 Score=80.46 Aligned_cols=163 Identities=12% Similarity=0.012 Sum_probs=117.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 043999 391 LIRAFSKAGNSKMASDLVREMEERGI-TPSEV----TYTILIDSFVRSDDMEKAFEMYSLMQKSGFS-PD----VYTYGV 460 (574)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 460 (574)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888876422 22211 2334666677778899999999888874222 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 043999 461 LIHGLCMKGNMKEASKLFNSMWET-----KLEP-NDVVYNMMIFGYCKEGNSYRALRLLGEMNEK----GLVPN-IASYS 529 (574)
Q Consensus 461 li~~~~~~g~~~~A~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 529 (574)
+...|...|++++|...++++++. +..+ ...+|..+...|.+.|++++|++.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999988741 1122 2347888899999999999999999887753 22222 56788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 043999 530 STIGVLCQDGK-WPEAEVLLNQMLK 553 (574)
Q Consensus 530 ~l~~~~~~~g~-~~~A~~~~~~m~~ 553 (574)
.+..++.+.|+ +++|...+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88889999994 6999999988874
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=7.9e-08 Score=87.29 Aligned_cols=192 Identities=7% Similarity=-0.047 Sum_probs=121.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHcccC--------CC-CC----
Q 043999 115 AHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSL-------LIFVIKSCSFDKGWLFFSENRCK--------VE-LD---- 174 (574)
Q Consensus 115 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l-------l~~~~~~g~~~~A~~~~~~~~~~--------~~-~~---- 174 (574)
++ ..+++..|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+...... +. ..
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 44 6789999999999998864 2356778777 45666666666666665554331 00 00
Q ss_pred --------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 043999 175 --------VYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVAT-- 244 (574)
Q Consensus 175 --------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 244 (574)
...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 2234445667777888888888887776543 443355566667777888888888876544321 111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043999 245 QHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPS--LYTYNCLIHEYCNEGKVSEGFKLFDEMRHREV 311 (574)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 311 (574)
...+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++....+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 23566667777777777777777777764322143 23455566667777777777777777776643
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=2e-06 Score=80.44 Aligned_cols=166 Identities=10% Similarity=-0.010 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 043999 387 TYNVLIRAFSKAGNSKMASDLVREMEERGITPSE-----VTYTILIDSFVRSDDMEKAFEMYSLMQKSGF---SPD--VY 456 (574)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 456 (574)
.+...+..+...|++++|...+.+..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566677788888888888777665322111 1233455566778888899888888765321 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CH
Q 043999 457 TYGVLIHGLCMKGNMKEASKLFNSMWE---TKL-EP--NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKG----LVP-NI 525 (574)
Q Consensus 457 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~ 525 (574)
+++.+...|...|++++|...++++.+ ... .+ ...++..+...|...|++++|++.+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888889999999999999988873 211 11 12578888889999999999999998877531 111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 043999 526 ASYSSTIGVLCQDGKWPEA-EVLLNQML 552 (574)
Q Consensus 526 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 552 (574)
.+|..+..++.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6778888899999999999 77787775
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.74 E-value=3.3e-07 Score=77.34 Aligned_cols=130 Identities=7% Similarity=-0.011 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
...|..+...+...|++++|...|++.++.. +.+..++..+...+...|++++|...+++.....+.+..++..+...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4568888888999999999999999988764 336777888888888888888888888887776677788888888888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIY--TSLIDGCCKNGDIERAKMLFRKIG 237 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~ 237 (574)
...|++++|.+.+++..+... .+...+ ..+...+.+.|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888877532 233444 333334667778888877776653
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=3.3e-07 Score=72.90 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
...|..+...+.+.|++++|++.|+++++.. +.+..++..+...+.+.|++++|...|+++....+.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 5677888888888888888888888887653 335666777777777777777777777777665566667777777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGC 220 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 220 (574)
.+.|++++|.+.++++.+... .+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 777777777777777666431 2334444444443
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=1.7e-07 Score=75.10 Aligned_cols=99 Identities=6% Similarity=-0.067 Sum_probs=76.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG 184 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 184 (574)
....|......|.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|+..|++.....|.+..+|..+..+
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34667788888888888888888888887764 34677777777788888888888888887776666777778888888
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 043999 185 CCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~ 204 (574)
+...|++++|.+.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 88888888888888877764
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=3.1e-06 Score=79.11 Aligned_cols=163 Identities=8% Similarity=-0.019 Sum_probs=114.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HhHHHH
Q 043999 356 LIDGFCDAGETDKAFRLFNQLKSNGQ-SPSV----VTYNVLIRAFSKAGNSKMASDLVREMEERGIT-PS----EVTYTI 425 (574)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 425 (574)
.+..+...|++++|.+.+++..+... .|+. ..+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567777888888888887766421 1221 12334555666777888888888888774222 22 225788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHH
Q 043999 426 LIDSFVRSDDMEKAFEMYSLMQK----S-GFSPD-VYTYGVLIHGLCMKGNMKEASKLFNSMWET----KLEP-NDVVYN 494 (574)
Q Consensus 426 li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~ 494 (574)
+...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|.+.+++.++. +..+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888999999988888763 1 11222 236788888999999999999999987753 2122 267888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 043999 495 MMIFGYCKEGN-SYRALRLLGEMNE 518 (574)
Q Consensus 495 ~li~~~~~~g~-~~~A~~~~~~m~~ 518 (574)
.+..+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999988764
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=6.9e-08 Score=89.79 Aligned_cols=99 Identities=8% Similarity=-0.037 Sum_probs=79.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG 184 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 184 (574)
+...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++.....+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45667788888888899999999998888763 33677778888888888888888888888887777778888888888
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 043999 185 CCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~ 204 (574)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888887663
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.71 E-value=3.2e-07 Score=73.48 Aligned_cols=97 Identities=5% Similarity=-0.037 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043999 143 TFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCK 222 (574)
Q Consensus 143 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 222 (574)
.+......+.+.|++++|++.|++.....|.+..+|..+..+|.+.|++++|++.+++.++... .+...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 3444555555556666666666555554455555555555555555555555555555555321 234455555555555
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 043999 223 NGDIERAKMLFRKIGELG 240 (574)
Q Consensus 223 ~g~~~~A~~~~~~~~~~~ 240 (574)
.|++++|++.|++..+..
T Consensus 94 ~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD 111 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 555555555555555543
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=7.8e-08 Score=89.42 Aligned_cols=97 Identities=6% Similarity=-0.069 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043999 141 SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGC 220 (574)
Q Consensus 141 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 220 (574)
...+..+...+.+.|++++|...|++.....+.+...|..+...|.+.|++++|.+.+++..+.. +.+...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44555556666666666666666666655555566666666666666666666666666666542 12445566666666
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 043999 221 CKNGDIERAKMLFRKIGE 238 (574)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~ 238 (574)
...|++++|...|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666544
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.68 E-value=1.7e-07 Score=77.62 Aligned_cols=102 Identities=10% Similarity=-0.104 Sum_probs=82.8
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHH
Q 043999 102 PVTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGIL 181 (574)
Q Consensus 102 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (574)
.|.+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..|++.....|.++..|..+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 34456778888888888888888888888888764 34677888888888888888888888888877777778888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~ 204 (574)
..+|.+.|++++|.+.|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888888775
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=4e-07 Score=73.46 Aligned_cols=120 Identities=8% Similarity=-0.051 Sum_probs=87.9
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILI 182 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 182 (574)
+.+...|..+...+.+.|++++|+..|++.++.. +.+..++..+...+...|++++|++.+++.....+.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 4456888899999999999999999999988763 335677777777788888888888888877766666777777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNG 224 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 224 (574)
..+.+.|++++|.+.|++..+... .+...+..+...+.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 788888888888888877766421 23345555555555443
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=1.1e-06 Score=82.31 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHcccC----CCCC--
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSN------TFNSLLIFVIKSCSFDKGWLFFSENRCK----VELD-- 174 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~-- 174 (574)
..+...+..+...|++++|.+.+++.++.... ... .+..+...+...|++++|+..+++.... ..+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 45566777888888888888888887765322 211 1223444455666777777777665432 1111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH---C-CCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-
Q 043999 175 VYSFGILIKGCCEAGDLNKAFEVLNQLEE---M-GFSP--NVVIYTSLIDGCCKNGDIERAKMLFRKIGELG----LVA- 243 (574)
Q Consensus 175 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~- 243 (574)
..+++.+...|...|++++|.+.+++..+ . +..+ ...++..+...|.+.|++++|+..+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34666677777777777777777766652 1 1011 11356666666666666666666666654321 000
Q ss_pred ChhhHHHHHHHHHhcCCHHHH-HHHHHHH
Q 043999 244 TQHTYTVLICGLFKNGLQKDG-FEFYEKM 271 (574)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 271 (574)
-..+|..+...|.+.|+.++| ...+++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 133455555555566666555 4444443
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=8.9e-07 Score=74.63 Aligned_cols=128 Identities=12% Similarity=0.002 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 422 TYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYC 501 (574)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 501 (574)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 35555566666777777777777666543 345666666777777777777777777777665322 5666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 043999 502 KEGNSYRALRLLGEMNEKGLVPNIASYS--STIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 502 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
..|++++|.+.++++.+.. +.+...+. ..+..+.+.|++++|...+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777642 22333442 23333566677777777776654
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=9.2e-08 Score=79.20 Aligned_cols=102 Identities=13% Similarity=-0.042 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 043999 171 VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTV 250 (574)
Q Consensus 171 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 250 (574)
.|.+...+..+...+.+.|++++|.+.|++..+... .+...|..+..+|.+.|++++|+..|++..+..+. +...|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 344566677777777777777777777777776532 25667777777777777777777777777766543 5666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 251 LICGLFKNGLQKDGFEFYEKMQLN 274 (574)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~~~~~ 274 (574)
+..+|.+.|++++|...|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777765
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=2.3e-07 Score=81.43 Aligned_cols=119 Identities=13% Similarity=-0.001 Sum_probs=58.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccC------CCCCHHHHHHHHHHHHhcCC
Q 043999 117 LKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCK------VELDVYSFGILIKGCCEAGD 190 (574)
Q Consensus 117 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~ 190 (574)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... .+....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456677776644443321 1123445555666666666666666666655431 12233445555555666666
Q ss_pred hhHHHHHHHHHHHC----CCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 191 LNKAFEVLNQLEEM----GFSP--NVVIYTSLIDGCCKNGDIERAKMLFRKI 236 (574)
Q Consensus 191 ~~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 236 (574)
+++|.+.+++..+. +-.| ...++..+...+...|++++|...+++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666655554432 1011 1223444555555555555555555554
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.65 E-value=4.5e-07 Score=72.80 Aligned_cols=121 Identities=9% Similarity=0.018 Sum_probs=87.0
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
.+...|..+...+...|++++|+..|++.++.. +.+...+..+...+...|++++|...+++.....+.+...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 345678888888888888888888888887753 3356677777777778888888888877776665666777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 043999 184 GCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDI 226 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 226 (574)
.+.+.|++++|.+.+++..+... .+...+..+...+.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 77777777777777777766532 2455666666666665543
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=1e-06 Score=70.01 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 043999 142 NTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCC 221 (574)
Q Consensus 142 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 221 (574)
.++..+...+...|++++|.+.|+++....+.+..++..++..+.+.|++++|...++++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3444444455555555555555555444334444455555555555555555555555544432 123344444444555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 043999 222 KNGDIERAKMLFRKIGE 238 (574)
Q Consensus 222 ~~g~~~~A~~~~~~~~~ 238 (574)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555554444
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=7.6e-07 Score=71.79 Aligned_cols=116 Identities=8% Similarity=-0.019 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043999 140 RSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDG 219 (574)
Q Consensus 140 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 219 (574)
+...+..+...+.+.|++++|...|++.....+.+..++..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344555556666666666666666666655555556666666666666666666666666665542 1244555556666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043999 220 CCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFK 257 (574)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 257 (574)
+.+.|++++|.+.|++..+.... +...+..+...+.+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 66666666666666665544322 23344444444433
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=1.1e-06 Score=79.70 Aligned_cols=198 Identities=12% Similarity=-0.042 Sum_probs=120.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCC---------------
Q 043999 362 DAGETDKAFRLFNQLKSNGQSPSVVTYNVL-------IRAFSKAGNSKMASDLVREMEERGITPS--------------- 419 (574)
Q Consensus 362 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------- 419 (574)
..++...|.+.|.++...... ....|..+ ...+...++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 456666677777666665322 45556555 3444444444444444444332 1111
Q ss_pred -------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 043999 420 -------EVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN--D 490 (574)
Q Consensus 420 -------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~ 490 (574)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1123345556777788888888887776543 433355555667778888888888887655421 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043999 491 VVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN--IASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILY 567 (574)
Q Consensus 491 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 567 (574)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|+...+..|.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL~ 248 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHh
Confidence 3567777888888888888888888775332143 235556677778888888888888888865 56644555443
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=1.6e-07 Score=77.83 Aligned_cols=94 Identities=13% Similarity=-0.090 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043999 423 YTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCK 502 (574)
Q Consensus 423 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 502 (574)
+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|+..|++++...+. +...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3344444445555555555555444432 334444444444555555555555555554443221 33444444455555
Q ss_pred cCCHHHHHHHHHHHHH
Q 043999 503 EGNSYRALRLLGEMNE 518 (574)
Q Consensus 503 ~g~~~~A~~~~~~m~~ 518 (574)
.|++++|.+.|++..+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554444
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=3.7e-07 Score=78.20 Aligned_cols=122 Identities=9% Similarity=0.115 Sum_probs=70.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH-HHhcCCh--hH
Q 043999 117 LKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG-CCEAGDL--NK 193 (574)
Q Consensus 117 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 193 (574)
...|++++|+..|++.++.. +.+...+..+...+...|++++|...|++.....+.+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 35666677777777666543 23555666666666666666666666666655545556666666666 5566665 66
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043999 194 AFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELG 240 (574)
Q Consensus 194 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 240 (574)
|.+.+++..+... .+...+..+...+...|++++|...|++..+..
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 6666666655421 234555556666666666666666666655543
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=3.5e-07 Score=80.20 Aligned_cols=120 Identities=11% Similarity=-0.076 Sum_probs=62.4
Q ss_pred hcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHhHHHHHHHHHhcCCHH
Q 043999 153 KSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEM----GFS-PNVVIYTSLIDGCCKNGDIE 227 (574)
Q Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~ 227 (574)
..|++++|.+.++.+.........++..+...+...|++++|.+.+++..+. +.. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777433333222235566666777777777777777777665541 111 12335555666666666666
Q ss_pred HHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 228 RAKMLFRKIGEL----GLVA--TQHTYTVLICGLFKNGLQKDGFEFYEKMQ 272 (574)
Q Consensus 228 ~A~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 272 (574)
+|.+.+++..+. +..+ ....+..+...+...|++++|...+++..
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666655432 1010 12234445555555555555555555544
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=4.1e-07 Score=77.93 Aligned_cols=121 Identities=7% Similarity=0.110 Sum_probs=74.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 043999 396 SKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHG-LCMKGNM--K 472 (574)
Q Consensus 396 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 472 (574)
...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34566667777777666553 2355666666667777777777777777766543 3455566666666 5566666 7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 473 EASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 473 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
+|...++++++..+. +...+..+...|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777776665322 4556666666777777777777777776664
No 145
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.59 E-value=4e-05 Score=71.69 Aligned_cols=139 Identities=8% Similarity=-0.070 Sum_probs=94.9
Q ss_pred HhcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 117 LKSRLSD-QALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCS----------FDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 117 ~~~g~~~-~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
.+.|.++ +|+.+++.++..+ +-+..+|+.--..+...+. +++++.+++.+....|.+..+|+.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3556655 7899999988864 2245556665444443333 56777777777776777888888777777
Q ss_pred HhcCC--hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043999 186 CEAGD--LNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGD-IERAKMLFRKIGELGLVATQHTYTVLICGLFKN 258 (574)
Q Consensus 186 ~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 258 (574)
.+.|+ ++++++.++++.+... .|..+|+.-.-.+.+.|. ++++++.++++.+.++. |..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 77773 7788888888877643 366777777777777777 57888888887776654 666776666555544
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=8.6e-07 Score=84.67 Aligned_cols=124 Identities=10% Similarity=-0.056 Sum_probs=75.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHcccC
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR--------------SNTFNSLLIFVIKSCSFDKGWLFFSENRCK 170 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 170 (574)
+...|..+...|.+.|++++|+..|++.++...... ..++..+..++.+.|++++|+..|+++...
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346677788888888888888888888776532211 345555556666666666666666665555
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 043999 171 VELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERA 229 (574)
Q Consensus 171 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 229 (574)
.|.+..+|..+..+|...|++++|++.|++..+... .+...+..+..++.+.|+.++|
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666666666555421 2344555555555555555555
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=1.6e-06 Score=69.43 Aligned_cols=116 Identities=10% Similarity=-0.009 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 422 TYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYC 501 (574)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 501 (574)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 34444444455555555555555544432 233444445555555555555555555555543211 3444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043999 502 KEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGK 540 (574)
Q Consensus 502 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 540 (574)
..|++++|.+.+++..+.. +.+...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555555431 1233444444444444443
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.57 E-value=1.4e-07 Score=90.23 Aligned_cols=142 Identities=10% Similarity=-0.154 Sum_probs=76.4
Q ss_pred ChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHhHHHHHHHHH
Q 043999 156 SFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPN--------------VVIYTSLIDGCC 221 (574)
Q Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~ 221 (574)
++++|...++......+.+...+..+...+.+.|++++|.+.|++..+...... ..+|..+..+|.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433322233556677777777777777777777777766432111 245555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 043999 222 KNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEG 299 (574)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 299 (574)
+.|++++|+..+++..+..+. +...|..+..+|...|++++|+..|++.++.. +.+...+..+...+.+.|+.++|
T Consensus 208 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 556666665555555554322 44455555555555555555555555555432 12344445555555555555554
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.57 E-value=9.9e-07 Score=70.74 Aligned_cols=105 Identities=13% Similarity=0.067 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 043999 457 TYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKG--LVPN----IASYSS 530 (574)
Q Consensus 457 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ 530 (574)
.+..+...+.+.|++++|++.|+++++..+. +...|..+..+|...|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3445566666666666666666666654322 45566666666666666666666666665421 0111 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043999 531 TIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYN 564 (574)
Q Consensus 531 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 564 (574)
+..++...|++++|++.|++.++. .||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 566666677777777777776654 45544443
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=4.2e-07 Score=75.20 Aligned_cols=98 Identities=11% Similarity=-0.020 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043999 174 DVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLIC 253 (574)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 253 (574)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++....++. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 33444444444445555555555555444432 113444444444455555555555555544443322 3344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 043999 254 GLFKNGLQKDGFEFYEKMQL 273 (574)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~ 273 (574)
++...|++++|.+.|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555544443
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=7e-05 Score=70.02 Aligned_cols=167 Identities=5% Similarity=-0.079 Sum_probs=110.1
Q ss_pred hcCChh-HHHHHHHHcccCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 043999 153 KSCSFD-KGWLFFSENRCKVELDVYSFGILIKGCCEAGD----------LNKAFEVLNQLEEMGFSPNVVIYTSLIDGCC 221 (574)
Q Consensus 153 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 221 (574)
+.|.++ +|+.+++.+....|.+..+|+.--..+...+. +++++..++.+..... -+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHh
Confidence 455555 78899988888777788888877666655544 5677788887776543 36677777777777
Q ss_pred hcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----
Q 043999 222 KNG--DIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGL-QKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNE----- 293 (574)
Q Consensus 222 ~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~----- 293 (574)
+.| ++++++..++++.+.++. +..+|+.-.-.+...|. .+++++.++++++..+ -|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccc
Confidence 777 377888888888777654 66777777666677776 4777777777776643 3666666555544443
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043999 294 ---------GKVSEGFKLFDEMRHREVACNVVTYNTLIC 323 (574)
Q Consensus 294 ---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 323 (574)
+.++++++.++......+. |...|+-+-.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ 235 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRW 235 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 2355555555555554444 5555544333
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=2.2e-06 Score=68.51 Aligned_cols=98 Identities=10% Similarity=-0.022 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
...|..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++.....|.+..+|..+...+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3567777788888888888888888887764 335677777777788888888888888877766666777777778888
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 043999 186 CEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~ 204 (574)
...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888877777663
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.51 E-value=1.4e-06 Score=67.71 Aligned_cols=101 Identities=6% Similarity=-0.110 Sum_probs=73.8
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCC--CHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVEL--DVYSFGIL 181 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l 181 (574)
.+...|..+...+.+.|++++|+..|++.++.. +.+..++..+...+...|++++|.+.|++.....+. +...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 345667778888888888888888888887754 335666777777777777777777777777666555 67777777
Q ss_pred HHHHHhc-CChhHHHHHHHHHHHCC
Q 043999 182 IKGCCEA-GDLNKAFEVLNQLEEMG 205 (574)
Q Consensus 182 i~~~~~~-g~~~~A~~~~~~m~~~g 205 (574)
...+.+. |++++|.+.+++..+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 7777777 77777777777776643
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.4e-06 Score=67.38 Aligned_cols=96 Identities=14% Similarity=0.011 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043999 457 TYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLC 536 (574)
Q Consensus 457 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 536 (574)
.+..+...+.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4445555566666666666666666654322 45566666666666666666666666666532 223455666666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 043999 537 QDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~ 554 (574)
..|++++|...+++.++.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666666643
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=5.1e-06 Score=65.01 Aligned_cols=98 Identities=7% Similarity=-0.103 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
+..|..+...+...|++++|...|++.++.. +.+...+..+...+...|++++|...+++.....+.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456677777777778888887777777653 235566666666677777777777777766655555666666666666
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 043999 186 CEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~ 204 (574)
.+.|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6777777777777666654
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.47 E-value=3.8e-07 Score=79.80 Aligned_cols=146 Identities=10% Similarity=-0.059 Sum_probs=68.1
Q ss_pred HHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC--------------HHhHHH
Q 043999 151 VIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFS-PN--------------VVIYTS 215 (574)
Q Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--------------~~~~~~ 215 (574)
....|+++++.+.++............+..+...+.+.|++++|.+.|++..+.... |+ ..++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 334455555554444322222224445666666777777777777777776653211 10 144555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 043999 216 LIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGK 295 (574)
Q Consensus 216 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 295 (574)
+..+|.+.|++++|+..+++..+.... +...+..+..++...|++++|.+.|++..+.. +.+...+..+...+...++
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544321 34445555555555555555555555554432 1133344444444444443
Q ss_pred HHH
Q 043999 296 VSE 298 (574)
Q Consensus 296 ~~~ 298 (574)
.++
T Consensus 172 ~~~ 174 (198)
T 2fbn_A 172 ARK 174 (198)
T ss_dssp HHC
T ss_pred HHH
Confidence 333
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=1.8e-06 Score=70.76 Aligned_cols=100 Identities=10% Similarity=-0.084 Sum_probs=73.1
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
.+...+..+...+.+.|++++|+..|++.++.+ +.+...|..+..++.+.|++++|+..|++.....|.+...+..+..
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 345566777777888888888888888877754 3356667777777777777777777777777666667777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 043999 184 GCCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~ 204 (574)
+|...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776653
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=1.9e-06 Score=70.59 Aligned_cols=98 Identities=10% Similarity=-0.053 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043999 174 DVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLIC 253 (574)
Q Consensus 174 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 253 (574)
+...+..+...+.+.|++++|.+.|++..+... .+...|..+..++.+.|++++|+..|++..+.++. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 444444555555555555555555555554321 24445555555555555555555555555554332 3444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 043999 254 GLFKNGLQKDGFEFYEKMQL 273 (574)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~ 273 (574)
++...|++++|.+.|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555544
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.45 E-value=3.5e-06 Score=67.47 Aligned_cols=104 Identities=11% Similarity=0.025 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 043999 422 TYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKL--EPN----DVVYNM 495 (574)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 495 (574)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++.++..+ .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666777777777777777776653 44566677777777777777777777777665311 111 235667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043999 496 MIFGYCKEGNSYRALRLLGEMNEKGLVPNIASY 528 (574)
Q Consensus 496 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 528 (574)
+..++...|++++|++.|++.++ ..||+.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 77777788888888888888776 34565443
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=4.5e-06 Score=70.31 Aligned_cols=101 Identities=13% Similarity=-0.043 Sum_probs=86.3
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILI 182 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 182 (574)
+.+...|..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++.....+.+...|..+.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456788899999999999999999999998864 336778888888899999999999999988877777888899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~ 204 (574)
..|.+.|++++|.+.|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999888774
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=6.3e-06 Score=64.50 Aligned_cols=96 Identities=13% Similarity=-0.010 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043999 143 TFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCK 222 (574)
Q Consensus 143 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 222 (574)
.+..+...+...|++++|...|++.....+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344444555555555555555555544444455555555555555555555555555555432 1134444555555555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 043999 223 NGDIERAKMLFRKIGEL 239 (574)
Q Consensus 223 ~g~~~~A~~~~~~~~~~ 239 (574)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 55555555555555443
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.41 E-value=1.7e-06 Score=69.38 Aligned_cols=109 Identities=6% Similarity=-0.015 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCC-------HHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELD-------VYSF 178 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~ 178 (574)
...|..+...+...|++++|...|++.++.. +.+...+..+...+...|++++|...+++.....+.+ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3567778888888888888888888887764 3456677777777778888888888777766542222 6667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043999 179 GILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLI 217 (574)
Q Consensus 179 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 217 (574)
..+...+.+.|++++|.+.|++..+.. |+......+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 777777777777777777777776642 4444444333
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=4.8e-06 Score=72.69 Aligned_cols=123 Identities=15% Similarity=0.001 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCChhHHHHHHHHccc
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRS----------------NTFNSLLIFVIKSCSFDKGWLFFSENRC 169 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 169 (574)
...+..+...+.+.|++++|+..|++.++.... +. .++..+..++.+.|++++|+..+++...
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456778888889999999999999998875311 21 4455555555566666666666665555
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 043999 170 KVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAK 230 (574)
Q Consensus 170 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 230 (574)
..+.+..++..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++.
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666666555432 113444444555554444444444
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=5.5e-06 Score=67.15 Aligned_cols=99 Identities=8% Similarity=-0.046 Sum_probs=70.0
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
.++..|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...|++.....+.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 456677777788888888888888888877653 3346666667777777777777777777766655666667777777
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 043999 184 GCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~ 203 (574)
.+...|++++|.+.|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777766654
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.39 E-value=4.6e-06 Score=64.60 Aligned_cols=99 Identities=16% Similarity=-0.008 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 043999 454 DVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVP--NIASYSST 531 (574)
Q Consensus 454 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l 531 (574)
+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 3445666667777777777777777777765332 56667777777777788888888887777742 22 45677777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHc
Q 043999 532 IGVLCQD-GKWPEAEVLLNQMLKL 554 (574)
Q Consensus 532 ~~~~~~~-g~~~~A~~~~~~m~~~ 554 (574)
..++.+. |++++|.+.+++..+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777778 8888888888777755
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=5e-06 Score=66.55 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 043999 423 YTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLE--PN----DVVYNMM 496 (574)
Q Consensus 423 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~l 496 (574)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.... ++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444445555555555555444432 233444444444444555555555555444432110 01 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043999 497 IFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 497 i~~~~~~g~~~~A~~~~~~m~~ 518 (574)
...+...|++++|.+.++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.5e-05 Score=65.45 Aligned_cols=100 Identities=16% Similarity=0.009 Sum_probs=81.3
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHH
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPR----SNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSF 178 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (574)
+.+...+..+...+.+.|++++|++.|++.++.. |+ ...+..+...+.+.|++++|+..+++.....+.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 3456889999999999999999999999998864 55 56677777788888888888888888776666677788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 043999 179 GILIKGCCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 179 ~~li~~~~~~g~~~~A~~~~~~m~~~ 204 (574)
..+...+...|++++|.+.|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888888888888888888887764
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=9.2e-06 Score=68.37 Aligned_cols=99 Identities=7% Similarity=-0.019 Sum_probs=79.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043999 419 SEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIF 498 (574)
Q Consensus 419 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 498 (574)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++.++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777788888888888888888887764 456778888888888888888888888888876433 5777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 043999 499 GYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 499 ~~~~~g~~~~A~~~~~~m~~~ 519 (574)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888874
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=1.4e-05 Score=64.65 Aligned_cols=98 Identities=8% Similarity=-0.136 Sum_probs=48.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043999 419 SEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIF 498 (574)
Q Consensus 419 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 498 (574)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++.++..+. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34444455555555555555555555554432 233444555555555555555555555555543222 3444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 043999 499 GYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 499 ~~~~~g~~~~A~~~~~~m~~ 518 (574)
+|...|++++|...+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555444
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=4.7e-06 Score=66.05 Aligned_cols=96 Identities=14% Similarity=-0.004 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHh
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCE 187 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 187 (574)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..|++.....|.+...+..+...+.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45667777888888888888888888764 33667777777777888888888888877776666677777777778888
Q ss_pred cCChhHHHHHHHHHHHC
Q 043999 188 AGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 188 ~g~~~~A~~~~~~m~~~ 204 (574)
.|++++|++.+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777653
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=2.9e-05 Score=63.64 Aligned_cols=98 Identities=14% Similarity=0.023 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043999 454 DVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN----DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYS 529 (574)
Q Consensus 454 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 529 (574)
+...+..+...+...|++++|.+.|++..+. .|+ ...|..+...|...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4455566666666666666666666666654 333 4556666666666777777777776666641 22455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 043999 530 STIGVLCQDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 530 ~l~~~~~~~g~~~~A~~~~~~m~~~ 554 (574)
.+..++...|++++|...+++.++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666777777777777776654
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.27 E-value=7.4e-06 Score=64.86 Aligned_cols=95 Identities=13% Similarity=0.005 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043999 458 YGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQ 537 (574)
Q Consensus 458 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 537 (574)
+..+...+.+.|++++|+..++++++..+. +...|..+..++...|++++|+..+++..+.. +.+...+..+..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344555666777777777777777765332 56667777777777777777777777777642 2245666667777777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 043999 538 DGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 538 ~g~~~~A~~~~~~m~~~ 554 (574)
.|++++|...+++.++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777643
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=6.7e-05 Score=74.35 Aligned_cols=197 Identities=11% Similarity=-0.001 Sum_probs=108.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 043999 322 ICGLCKEMRVQEAERLLDQMKMAGISPNV----------------ITYNKLIDGFCDAGETDKAFRLFNQLKSNG-QSPS 384 (574)
Q Consensus 322 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~ 384 (574)
...+.+.|++++|++.|..+.+....... ..+..++..|.+.|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44567788888888888888775422111 125566777777777777777776654421 0111
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-
Q 043999 385 VV----TYNVLIRAFSKAGNSKMASDLVREMEE----RGITPS-EVTYTILIDSFVRSDDMEKAFEMYSLMQKS--GFS- 452 (574)
Q Consensus 385 ~~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~- 452 (574)
.. +.+.+...+...|+.+.|..++++... .+..+. ..++..+...+...|++++|..+++.+... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 122222233345667777776666542 222222 334556666666777777777776665432 111
Q ss_pred -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 453 -P-DVYTYGVLIHGLCMKGNMKEASKLFNSMWET---KLEP-N--DVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 453 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
+ ...++..++..|...|++++|..++++.... ...| . ...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1235566666666777777777776665532 1111 1 23445555556666677777666666655
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=8.9e-05 Score=73.43 Aligned_cols=124 Identities=11% Similarity=-0.025 Sum_probs=64.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCChhHHHHHHHHcccC--CCCC
Q 043999 113 IDAHLKSRLSDQALFYFHQMLDSGVRPRS----------------NTFNSLLIFVIKSCSFDKGWLFFSENRCK--VELD 174 (574)
Q Consensus 113 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~ 174 (574)
.+.+.+.|++++|++.|.++++....... .++..+...|.+.|++++|.+.+..+... .-++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677899999999999999875422111 12445566666666666666666655432 0111
Q ss_pred H----HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 175 V----YSFGILIKGCCEAGDLNKAFEVLNQLEE----MGFSPN-VVIYTSLIDGCCKNGDIERAKMLFRKI 236 (574)
Q Consensus 175 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 236 (574)
. .+.+.+...+...|+.++|.+++++... .+..+. ..++..+...|...|++++|..+++++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 1 1222233333344555555555554432 111111 224444555555555555555555544
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.23 E-value=6.1e-06 Score=68.84 Aligned_cols=97 Identities=13% Similarity=0.008 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHcccCC--CC----C
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVR-PR----SNTFNSLLIFVIKSCSFDKGWLFFSENRCKV--EL----D 174 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~----~ 174 (574)
..++..+...|...|++++|+..+++.++.... ++ ..++..+...+...|++++|...+++..... .. .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 457888889999999999999999988753111 11 1245556666666677777766666654320 01 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043999 175 VYSFGILIKGCCEAGDLNKAFEVLNQLE 202 (574)
Q Consensus 175 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 202 (574)
..++..+...+...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3345555555555666666655555544
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.20 E-value=3.8e-05 Score=61.29 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=42.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 043999 427 IDSFVRSDDMEKAFEMYSLMQKSGFSPDV---YTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN---DVVYNMMIFGY 500 (574)
Q Consensus 427 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~ 500 (574)
...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...++++.+..+. + ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 344445555555555555554432 1111 24444444555555555555555555443211 1 33444445555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 043999 501 CKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 501 ~~~g~~~~A~~~~~~m~~ 518 (574)
...|++++|...|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=4.4e-05 Score=60.90 Aligned_cols=95 Identities=16% Similarity=0.003 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHcccCCCCC---HHHHHHHH
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPRS---NTFNSLLIFVIKSCSFDKGWLFFSENRCKVELD---VYSFGILI 182 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li 182 (574)
+..+...+.+.|++++|+..|++.++... .+. ..+..+..++.+.|++++|...|+++....|.+ ..++..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 44566777788888888888888877532 122 356666777777788888877777776654555 56677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 043999 183 KGCCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~ 204 (574)
..+.+.|++++|.+.|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777664
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=1.5e-06 Score=87.30 Aligned_cols=124 Identities=7% Similarity=0.006 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhc
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEA 188 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 188 (574)
|..+...+.+.|++++|++.|++.++.. +.+..++..+..++.+.|++++|++.+++.....+.+..++..+..+|.+.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444555668899999999999988864 335778888888899999999999999888877777888888889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 043999 189 GDLNKAFEVLNQLEEMGFSPNVVIYTSLIDG--CCKNGDIERAKMLFR 234 (574)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 234 (574)
|++++|.+.|++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999988887532 134455555555 777888888888887
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.15 E-value=1.2e-05 Score=66.92 Aligned_cols=131 Identities=11% Similarity=-0.052 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHH
Q 043999 423 YTILIDSFVRSDDMEKAFEMYSLMQKSGF-SPD----VYTYGVLIHGLCMKGNMKEASKLFNSMWETK----LEP-NDVV 492 (574)
Q Consensus 423 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~ 492 (574)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|.+.+++..+.. ..+ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 44444445555555555555554433200 011 1345556666666677777776666655421 000 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 493 YNMMIFGYCKEGNSYRALRLLGEMNEK----GLVP-NIASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 493 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++.++
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666677777777777777777776542 1111 124566677777788888888888887764
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=2.4e-05 Score=78.10 Aligned_cols=138 Identities=12% Similarity=-0.034 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
...|..+...|.+.|++++|+..|++.++.. |+...+ .-++..+ .. +....+|..+..+|
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~------~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SE------SFLLAAFLNLAMCY 327 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HH------HHHHHHHHHHHHHH
Confidence 3567777777777778888877777777642 211000 0000000 00 00133444455555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGF 265 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (574)
.+.|++++|+..+++.++... .+...|..+..+|...|++++|+..|++..+..+. +...+..+..++.+.++.+++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544321 23444555555555555555555555555444322 3344555555555555554443
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=5.2e-06 Score=65.31 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=60.2
Q ss_pred hcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043999 118 KSRLSDQALFYFHQMLDSG--VRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAF 195 (574)
Q Consensus 118 ~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 195 (574)
..|++++|+..|++.++.+ -+.+..++..+..++.+.|++++|+..|++.....|.+..++..+..++.+.|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3577788888888887753 12235566677777777888888888887777666667777777777777888888888
Q ss_pred HHHHHHHHC
Q 043999 196 EVLNQLEEM 204 (574)
Q Consensus 196 ~~~~~m~~~ 204 (574)
+.+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877777664
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=4.8e-05 Score=63.69 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 421 VTYTILIDSFVRSDDMEKAFEMYSLMQKS-------GF----------SPDVYTYGVLIHGLCMKGNMKEASKLFNSMWE 483 (574)
Q Consensus 421 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 483 (574)
..+......+.+.|++++|...|....+. .- +.+...|..+..+|.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44566666777777777777777776553 00 11123455555566666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 484 TKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 484 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
..+. +...|..+..+|...|++++|...|++..+
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4322 455566666666666666666666666655
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=4.5e-05 Score=63.89 Aligned_cols=99 Identities=14% Similarity=0.038 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--------CC---------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 385 VVTYNVLIRAFSKAGNSKMASDLVREMEER--------GI---------TPSEVTYTILIDSFVRSDDMEKAFEMYSLMQ 447 (574)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 447 (574)
...+......+.+.|++++|+..|.+..+. .. +.+...|..+..+|.+.|++++|...++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666677777777888887777776653 00 1123456667777777778888877777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 448 KSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWET 484 (574)
Q Consensus 448 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 484 (574)
+.. +.+...|..+..+|...|++++|...|++.++.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 455667777777777778888888777777764
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=8.6e-06 Score=81.69 Aligned_cols=119 Identities=9% Similarity=-0.030 Sum_probs=85.1
Q ss_pred HHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 043999 149 IFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIER 228 (574)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 228 (574)
..+.+.|++++|.+.|++.....+.+..+|..+...|.+.|++++|++.+++..+... .+..++..+..+|.+.|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 3455778888888888887776677788888888888888888888888888887632 356677888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 043999 229 AKMLFRKIGELGLVATQHTYTVLICG--LFKNGLQKDGFEFYE 269 (574)
Q Consensus 229 A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 269 (574)
|++.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888887775433 34455555555 777788888888777
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=3.2e-05 Score=74.63 Aligned_cols=138 Identities=14% Similarity=0.010 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCC 186 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 186 (574)
..|..+...+.+.|++++|+..|++.++.- +... ..... ++.....+.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888888877620 0000 00000 0000011224455666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043999 187 EAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGF 265 (574)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (574)
+.|++++|++.+++.++.. +.+...+..+..+|.+.|++++|++.|++..+..+. +...+..+...+.+.++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666542 124455666666666666666666666666554332 4445555555555555555544
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=9.2e-06 Score=63.85 Aligned_cols=84 Identities=13% Similarity=0.031 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 434 DDMEKAFEMYSLMQKSG--FSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALR 511 (574)
Q Consensus 434 g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 511 (574)
|++++|...|++..+.+ -+.+...+..+...|...|++++|++.|+++++..+. +..++..+..++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44455555555554432 1122334444444555555555555555555443222 34444445555555555555555
Q ss_pred HHHHHHH
Q 043999 512 LLGEMNE 518 (574)
Q Consensus 512 ~~~~m~~ 518 (574)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.05 E-value=5.4e-05 Score=75.51 Aligned_cols=154 Identities=9% Similarity=-0.104 Sum_probs=114.6
Q ss_pred hcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHhHHHHHH
Q 043999 153 KSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPN--------------VVIYTSLID 218 (574)
Q Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~ 218 (574)
..+++++|...|+......+.....+..+...+.+.|++++|...|++..+...... ..+|..+..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 344555565555444333344677777777888888888888888887776421111 578999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043999 219 GCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSE 298 (574)
Q Consensus 219 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 298 (574)
+|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|+..|++.++.. +-+...+..+...+.+.++.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887654 78899999999999999999999999999864 2356788888899999999887
Q ss_pred HHH-HHHHHHh
Q 043999 299 GFK-LFDEMRH 308 (574)
Q Consensus 299 A~~-~~~~m~~ 308 (574)
+.+ .+..|..
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 764 4555543
No 188
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.04 E-value=0.00016 Score=58.50 Aligned_cols=111 Identities=11% Similarity=-0.046 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 043999 434 DDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCK----EGNSYRA 509 (574)
Q Consensus 434 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 509 (574)
+++++|.+.|++..+.| .|+.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566777777766665 33333 5555556666677777777776643 55666666666666 6677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 043999 510 LRLLGEMNEKGLVPNIASYSSTIGVLCQ----DGKWPEAEVLLNQMLKLG 555 (574)
Q Consensus 510 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 555 (574)
.++|++..+.| +...+..+...|.. .++.++|..++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777754 45566666666666 677777777777777665
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.04 E-value=5e-05 Score=62.13 Aligned_cols=30 Identities=17% Similarity=0.031 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSG 136 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 136 (574)
..+......+.+.|++++|+..|++.++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~ 41 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS 41 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 456777888889999999999999988753
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=0.00025 Score=72.37 Aligned_cols=137 Identities=6% Similarity=-0.047 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHH
Q 043999 191 LNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNG--DIERAKMLFRKIGELGLVATQHTYTVLICGLFKNG-LQKDGFEF 267 (574)
Q Consensus 191 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~ 267 (574)
++++++.++++.+...+ +..+|+.-...+.+.| +++++++.++++.+.++. +..+|+.-...+.+.| ..+++++.
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 44444444444443221 3344444444444444 334444444444444333 4444444444444444 44444444
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043999 268 YEKMQLNGVSPSLYTYNCLIHEYCNE--------------GKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRV 331 (574)
Q Consensus 268 ~~~~~~~g~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 331 (574)
++++++..+ -|...|+.....+.+. +.++++++.+++.....+. |...|+-.-..+.+.++.
T Consensus 167 ~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 167 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 444444322 1344444433333331 3456677777666665544 666666666666555553
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.02 E-value=5.4e-05 Score=73.01 Aligned_cols=140 Identities=12% Similarity=-0.056 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043999 385 VVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHG 464 (574)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 464 (574)
...+..+...+.+.|++++|...|++..+.- +... .....+++ .+.. +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~~~-------~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDADG-------AKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHHHH-------GGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChHHH-------HHHH-HHHHHHHHHHHHH
Confidence 4456666777777777777777777766520 0000 00011111 1010 2234567777778
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 465 LCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEA 544 (574)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 544 (574)
|.+.|++++|++.++++++.... +...|..+..+|...|++++|++.|++..+.. +.+...+..+..++.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888875432 56777788888888888888888888887742 22455666666666666666665
Q ss_pred HH
Q 043999 545 EV 546 (574)
Q Consensus 545 ~~ 546 (574)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=0.0001 Score=60.24 Aligned_cols=110 Identities=13% Similarity=-0.024 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC
Q 043999 458 YGVLIHGLCMKGNMKEASKLFNSMWETKLEP------N-----DVVYNMMIFGYCKEGNSYRALRLLGEMNEK-----GL 521 (574)
Q Consensus 458 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 521 (574)
+......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344445556666666666666666532220 1 237888888888888888888888888873 01
Q ss_pred CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHH
Q 043999 522 VPNI-ASY----SSTIGVLCQDGKWPEAEVLLNQMLKL-----GLKPSVSLYNILY 567 (574)
Q Consensus 522 ~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~l~ 567 (574)
.|+. ..| .....++...|++++|+..|++.++. |+.+........+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 5654 567 78888899999999999999988743 5555554444333
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=1.2e-05 Score=76.71 Aligned_cols=149 Identities=10% Similarity=-0.044 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGC 185 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 185 (574)
...|..+...+.+.|++++|+..|++.++.. |+... +...|+.+++...+. ...|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 4567788888888999999999999888753 44321 112233333332221 13667777788
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHH
Q 043999 186 CEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICG-LFKNGLQKDG 264 (574)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a 264 (574)
.+.|++++|++.+++.++.. +.+...|..+..+|...|++++|...|++..+..+. +...+..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877653 235667777888888888888888888877665432 44455555544 3344566677
Q ss_pred HHHHHHHHHC
Q 043999 265 FEFYEKMQLN 274 (574)
Q Consensus 265 ~~~~~~~~~~ 274 (574)
...|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777777654
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=0.00039 Score=71.04 Aligned_cols=176 Identities=7% Similarity=-0.047 Sum_probs=143.7
Q ss_pred hcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 043999 118 KSR-LSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCS----------FDKGWLFFSENRCKVELDVYSFGILIKGCC 186 (574)
Q Consensus 118 ~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 186 (574)
+.| ..++|++.++++++.+ +-+..+|+.--.++.+.|+ ++++++.++.+....|.+..+|+.-...+.
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344 4468899999999875 3356778887777777777 899999999999888899999999999999
Q ss_pred hcC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----
Q 043999 187 EAG--DLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNG-DIERAKMLFRKIGELGLVATQHTYTVLICGLFKN----- 258 (574)
Q Consensus 187 ~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 258 (574)
+.| +++++++.++++.+.... |..+|+.-...+.+.| .++++++.++++.+.++. +..+|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccc
Confidence 999 779999999999997643 7889999888888999 899999999999988765 788898888777763
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 043999 259 ---------GLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVS 297 (574)
Q Consensus 259 ---------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 297 (574)
+.++++++.+.+..... +-|...|+-+-..+.+.++.+
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 55789999999988764 336777887777776666633
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=3e-05 Score=73.96 Aligned_cols=152 Identities=9% Similarity=-0.075 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 384 SVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIH 463 (574)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 463 (574)
....+..+...+.+.|++++|...|++..+. .|+... +...++.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3556777777788888888888888887765 233321 223333444332221 136778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCH
Q 043999 464 GLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN-IASYSSTIGV-LCQDGKW 541 (574)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~~ 541 (574)
+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999886432 6788999999999999999999999998874 444 3444444444 2345677
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 043999 542 PEAEVLLNQMLKLGLKPS 559 (574)
Q Consensus 542 ~~A~~~~~~m~~~g~~p~ 559 (574)
+++...|++|... .|+
T Consensus 316 ~~a~~~~~~~l~~--~p~ 331 (338)
T 2if4_A 316 QKQKEMYKGIFKG--KDE 331 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhhCC--CCC
Confidence 8888899988854 454
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=1.6e-05 Score=61.47 Aligned_cols=93 Identities=9% Similarity=0.035 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCC------HHHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELD------VYSFG 179 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~ 179 (574)
...|..+...+.+.|++++|++.|++.++.. +.+...+..+..++.+.|++++|++.|++.....|.+ ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567777777778888888888888777653 3356666677777777777777777777766654444 55555
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 043999 180 ILIKGCCEAGDLNKAFEVLN 199 (574)
Q Consensus 180 ~li~~~~~~g~~~~A~~~~~ 199 (574)
.+..++...|+.+.|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 56666666665555554443
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.83 E-value=0.00014 Score=53.65 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=58.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHH
Q 043999 105 KSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKG 184 (574)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 184 (574)
+...|..+...+.+.|++++|+..|++.++.. +.+..++..+..++.+.|++++|...|++.....|.+..++..+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45677778888888888888888888887753 33566667777777777777777777777766555666666666665
Q ss_pred HHhc
Q 043999 185 CCEA 188 (574)
Q Consensus 185 ~~~~ 188 (574)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.78 E-value=0.00061 Score=55.07 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=8.0
Q ss_pred ChHHHHHHHHHHHhCC
Q 043999 121 LSDQALFYFHQMLDSG 136 (574)
Q Consensus 121 ~~~~A~~~~~~~~~~g 136 (574)
++++|++.|++..+.|
T Consensus 10 d~~~A~~~~~~aa~~g 25 (138)
T 1klx_A 10 DLKKAIQYYVKACELN 25 (138)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCC
Confidence 4445555555555444
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=2.4e-05 Score=60.51 Aligned_cols=90 Identities=13% Similarity=0.018 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHH
Q 043999 455 VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN-------IAS 527 (574)
Q Consensus 455 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~ 527 (574)
...+..+...+...|++++|++.|++.++..+. +...|..+..++...|++++|++.+++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 445566666677777777777777777665322 5666777777777777777777777777763 343 334
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 043999 528 YSSTIGVLCQDGKWPEAEVL 547 (574)
Q Consensus 528 ~~~l~~~~~~~g~~~~A~~~ 547 (574)
+..+..++...|+.++|...
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHhHhhhHhH
Confidence 44445555555555554443
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00015 Score=72.18 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC
Q 043999 457 TYGVLIHGLCMKGNMKEASKLFNSMWET-----KL-EPN-DVVYNMMIFGYCKEGNSYRALRLLGEMNEK-----GL-VP 523 (574)
Q Consensus 457 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p 523 (574)
+++.|...|...|++++|+.++++.++. |. .|+ ..+++.|...|...|++++|..++++.++. |- .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4555555555555555555555554421 11 111 234555555555555555555555554421 21 11
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 524 NI-ASYSSTIGVLCQDGKWPEAEVLLNQMLK 553 (574)
Q Consensus 524 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 553 (574)
+. .+...+..++...|++++|..++.++++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2223333444455556666666665553
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.76 E-value=6.4e-05 Score=61.34 Aligned_cols=98 Identities=15% Similarity=0.015 Sum_probs=61.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043999 432 RSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGN----------MKEASKLFNSMWETKLEPNDVVYNMMIFGYC 501 (574)
Q Consensus 432 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 501 (574)
+.+.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++.++..+. +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445566666666665543 4455556555555555544 45777777777775433 5667777777777
Q ss_pred hcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043999 502 KEG-----------NSYRALRLLGEMNEKGLVPNIASYSSTIG 533 (574)
Q Consensus 502 ~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 533 (574)
..| ++++|++.|++.++ +.|+...|...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 654 67777777777777 4666555544443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.69 E-value=0.00015 Score=56.52 Aligned_cols=79 Identities=14% Similarity=-0.074 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 124 QALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 124 ~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
+|++.|++.++.. +.+...+..+...+...|++++|+..|++.....+.+..+|..+...+.+.|++++|.+.|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666543 235566666666677777777777777766655556666777777777777777777777776654
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.67 E-value=0.0002 Score=55.76 Aligned_cols=81 Identities=12% Similarity=-0.050 Sum_probs=61.7
Q ss_pred hHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 158 DKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIG 237 (574)
Q Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 237 (574)
++|+..|++.....|.+...+..+...|...|++++|.+.|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356677777776667778888888888888888888888888887754 2356677788888888888888888888776
Q ss_pred hC
Q 043999 238 EL 239 (574)
Q Consensus 238 ~~ 239 (574)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.66 E-value=9.2e-05 Score=60.40 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=74.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 043999 117 LKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSF----------DKGWLFFSENRCKVELDVYSFGILIKGCC 186 (574)
Q Consensus 117 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 186 (574)
.+.+.+++|++.+++.++.. +.+...|..+..++...+++ ++|+..|++.....|.+..+|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 35677899999999988875 44788888888888887765 48888888888777778888888888888
Q ss_pred hcC-----------ChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043999 187 EAG-----------DLNKAFEVLNQLEEMGFSPNVVIYTSLID 218 (574)
Q Consensus 187 ~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 218 (574)
..| ++++|++.|++..+. .|+...|...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 764 788888888887774 466555544433
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.61 E-value=0.0003 Score=70.04 Aligned_cols=126 Identities=11% Similarity=-0.030 Sum_probs=86.2
Q ss_pred HHHhcCChHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHH
Q 043999 394 AFSKAGNSKMASDLVREMEER---GITPS----EVTYTILIDSFVRSDDMEKAFEMYSLMQK-----SG-FSPD-VYTYG 459 (574)
Q Consensus 394 ~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~-~~~~~ 459 (574)
.+...|++++|..++++..+. -+.|+ ..+++.|...|...|++++|..++++.++ .| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888887776542 11121 34577788888888888888888877653 12 1122 35678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 460 VLIHGLCMKGNMKEASKLFNSMWET-----KLE-PN-DVVYNMMIFGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 460 ~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
.|...|...|++++|+.+++++++. |.. |+ ..+.+.+..++...|.+++|..++.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999888887642 322 22 334566677778888899999999888763
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.54 E-value=0.0008 Score=49.33 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 458 YGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 458 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
+..+...+...|++++|+..+++..+.... +...+..+...+...|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333334444444444444444444432211 233344444444444444444444444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.49 E-value=0.00044 Score=52.22 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=51.1
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHccc
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRC 169 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 169 (574)
+.++..|..+...|.+.|++++|+..|++.++.+ +.+..+|..+..++.+.|++++|.+.|++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3466778888888888888888888888888764 33566777788888888888888888877653
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.24 E-value=0.0012 Score=49.66 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 173 LDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGE 238 (574)
Q Consensus 173 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 238 (574)
.+..++..+...|.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555555555555554321 1334455555555555555555555555443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.22 E-value=0.0085 Score=56.24 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043999 489 NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNIL 566 (574)
Q Consensus 489 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 566 (574)
+..+|..+...+...|++++|...+++++.. .|+...|..+...+.-.|++++|...++++... .|...||...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 5666666666666667777777777777764 366666666666666777777777777777655 5666665443
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.08 E-value=0.0032 Score=61.61 Aligned_cols=85 Identities=9% Similarity=-0.074 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHH
Q 043999 468 KGNMKEASKLFNSMWET---KLEPN----DVVYNMMIFGYCKEGNSYRALRLLGEMNEK-----G-LVPNI-ASYSSTIG 533 (574)
Q Consensus 468 ~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~~~~~l~~ 533 (574)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++.++- | -.|+. .+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666665532 11222 345666667777777777777766666532 1 12222 45666777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 043999 534 VLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~ 552 (574)
.|...|++++|..++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777765
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.0089 Score=56.09 Aligned_cols=135 Identities=9% Similarity=-0.026 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHH--hcCC---hhHHHHHHHHcccCCCCCHHHHHHHHHHHHhc---C-----ChhHHHHHHHHHHH-
Q 043999 138 RPRSNTFNSLLIFVI--KSCS---FDKGWLFFSENRCKVELDVYSFGILIKGCCEA---G-----DLNKAFEVLNQLEE- 203 (574)
Q Consensus 138 ~p~~~~~~~ll~~~~--~~g~---~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~---g-----~~~~A~~~~~~m~~- 203 (574)
+.+..+|...+.+.. ..++ ..+|+.+|++.....|.....|..+.-+|... + ......+.++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 445566666665433 2222 35667777777666555566665555444310 0 00000111111110
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 204 MGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLN 274 (574)
Q Consensus 204 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 274 (574)
...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|+.++|.+.+++....
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 0112334444444444444455555555555555443 34444444445555555555555555555443
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0068 Score=59.34 Aligned_cols=88 Identities=14% Similarity=0.014 Sum_probs=47.9
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 043999 465 LCMKGNMKEASKLFNSMWET---KLEPN----DVVYNMMIFGYCKEGNSYRALRLLGEMNEK-----G-LVPN-IASYSS 530 (574)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~ 530 (574)
+.+.|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++++- | -.|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455566666666655532 11121 334566666666666666666666655432 1 1122 245566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 043999 531 TIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 531 l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
+...|...|++++|..++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666777777766666665
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.88 E-value=0.002 Score=48.21 Aligned_cols=66 Identities=9% Similarity=-0.049 Sum_probs=36.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHH
Q 043999 112 IIDAHLKSRLSDQALFYFHQMLDSGVRPRSN-TFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSF 178 (574)
Q Consensus 112 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (574)
....+.+.|++++|+..|++.++.. +.+.. .+..+..++.+.|++++|.+.|++.....|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3445556666666666666666543 22344 555555556666666666666665554434444333
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.79 E-value=0.0015 Score=48.82 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=33.7
Q ss_pred HHHHhcCChhHHHHHHHHcccCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043999 149 IFVIKSCSFDKGWLFFSENRCKVELDVY-SFGILIKGCCEAGDLNKAFEVLNQLEEM 204 (574)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 204 (574)
..+.+.|++++|...|+++....+.+.. .+..+...|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445566666666666665555455555 6666666666666666666666666554
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.11 Score=55.68 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 350 VITYNKLIDGFCDAGETDKAFRLFNQL 376 (574)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 376 (574)
...|..+...+.+.++++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 334444444444444444444444433
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.68 E-value=0.0063 Score=59.51 Aligned_cols=86 Identities=12% Similarity=-0.003 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHH
Q 043999 433 SDDMEKAFEMYSLMQKS---GFSPD----VYTYGVLIHGLCMKGNMKEASKLFNSMWET-----KL-EPN-DVVYNMMIF 498 (574)
Q Consensus 433 ~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~li~ 498 (574)
.|++++|..++++..+. -+.|+ ..+++.|...|...|++++|+.+++++++. |. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777766431 11222 356777888888888888888888877642 21 222 446788888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 043999 499 GYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 499 ~~~~~g~~~~A~~~~~~m~~ 518 (574)
.|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888887764
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.60 E-value=0.028 Score=45.27 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 043999 436 MEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKG---NMKEASKLFNSMWETKLEP--NDVVYNMMIFGYCKEGNSYRAL 510 (574)
Q Consensus 436 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 510 (574)
...+.+-|.+....+ +++..+...+..++++.+ ++++++.++++..+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 444555555555544 355555555666666655 4556666666666543 13 2344444555556666666666
Q ss_pred HHHHHHHH
Q 043999 511 RLLGEMNE 518 (574)
Q Consensus 511 ~~~~~m~~ 518 (574)
++++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666666
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.58 E-value=0.0091 Score=58.45 Aligned_cols=91 Identities=13% Similarity=0.007 Sum_probs=62.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHH
Q 043999 428 DSFVRSDDMEKAFEMYSLMQKSG---FSPD----VYTYGVLIHGLCMKGNMKEASKLFNSMWET-----K-LEPN-DVVY 493 (574)
Q Consensus 428 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~ 493 (574)
..+.+.|++++|..++++..+.. +.|+ ..+++.+...|...|++++|+.++++++.. | -.|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33456677777777777765431 1222 346777888888888888888888877642 2 1222 4467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 494 NMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 494 ~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
+.|...|...|++++|..++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888888888888888888887764
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.57 E-value=0.016 Score=42.60 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043999 452 SPDVYTYGVLIHGLCMKGN---MKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEK 519 (574)
Q Consensus 452 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 519 (574)
+.+...+..+..++...++ .++|..++++.++..+. +......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555555555543333 46666666666654333 4555555666666666666666666666654
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.38 E-value=0.061 Score=57.76 Aligned_cols=98 Identities=10% Similarity=0.098 Sum_probs=52.4
Q ss_pred HhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043999 117 LKSRLSDQALF-YFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAF 195 (574)
Q Consensus 117 ~~~g~~~~A~~-~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 195 (574)
...+++++|.+ ++..+ |+......++..+.+.|..++|+++.+... .-.....+.|++++|.
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-----------~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD-----------QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH-----------HHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc-----------hheehhhhcCCHHHHH
Confidence 45667776655 33111 111122555666666666666665442111 0112334556666666
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 196 EVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIG 237 (574)
Q Consensus 196 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 237 (574)
++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 664332 245666667777777777777777666653
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.37 E-value=0.15 Score=45.81 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCH
Q 043999 191 LNKAFEVLNQLEEMGFSPN---VVIYTSLIDGCCKN-----GDIERAKMLFRKIGELGLVATQHTYTVLICGLFKN-GLQ 261 (574)
Q Consensus 191 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 261 (574)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++.++.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45777777777774 455 45788888888884 89999999999988876543577788888888884 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHhhHH
Q 043999 262 KDGFEFYEKMQLNGVS--PSLYTYN 284 (574)
Q Consensus 262 ~~a~~~~~~~~~~g~~--p~~~~~~ 284 (574)
+++.+.+++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9999999988887555 5544333
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.36 E-value=0.035 Score=44.68 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 043999 471 MKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEG---NSYRALRLLGEMNEKGLVP--NIASYSSTIGVLCQDGKWPEAE 545 (574)
Q Consensus 471 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~ 545 (574)
+..+.+-|.+....+. ++..+...+.+++++.+ +.++++.++++..+.+ .| +...+..+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555443 45666666666666665 4456666666666642 23 2233444555566666666666
Q ss_pred HHHHHHHHcCCCCCH
Q 043999 546 VLLNQMLKLGLKPSV 560 (574)
Q Consensus 546 ~~~~~m~~~g~~p~~ 560 (574)
++++.+++. +|+.
T Consensus 92 ~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 92 KYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHhc--CCCC
Confidence 666666654 5554
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.29 E-value=3.8e-06 Score=79.99 Aligned_cols=205 Identities=14% Similarity=0.180 Sum_probs=133.2
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
..+.+|..|..++.+.++..+|++-|-+. + |+..|..++....+.|.+++-++.+.-.++. ..++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---D---DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC---S---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC---C---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHH
Confidence 44567999999999999999988765432 2 4556778899999999999999888777665 334455567888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------CCC
Q 043999 184 GCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELG--------------------LVA 243 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~ 243 (574)
+|++.++..+-.+.+. .||..-...+.+-|...|.++.|.-+|..+.... -..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998776544431 3677777888888888888888887776543210 012
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043999 244 TQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLIC 323 (574)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 323 (574)
++.||.-+..+|...+.+.-|.-.--.+.-. || -...++..|-..|.+++-+.+++.-... -......|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 4556666666666666665554443333321 11 1223455566667777766666665432 1225556666666
Q ss_pred HHHhc
Q 043999 324 GLCKE 328 (574)
Q Consensus 324 ~~~~~ 328 (574)
.|++-
T Consensus 272 LYsKY 276 (624)
T 3lvg_A 272 LYSKF 276 (624)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 66554
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.26 E-value=0.044 Score=40.24 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=21.4
Q ss_pred hHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 158 DKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
++|..++++.....|.++.+...+...+.+.|++++|++.|+++.+
T Consensus 26 ~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444443344444444444444444555555555444444
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.14 E-value=0.33 Score=37.63 Aligned_cols=137 Identities=14% Similarity=0.041 Sum_probs=60.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043999 187 EAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFE 266 (574)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 266 (574)
-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. -|.. ..|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHH
Confidence 345666666666665542 24445555555544444545555555544331 0110 1122222222
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 267 FYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAG 345 (574)
Q Consensus 267 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 345 (574)
.+-.+- .+.......++.+...|+-++-.+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 221110 1222333344444555555555555555432 223344444455555555555555555555555544
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.18 Score=41.71 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=19.5
Q ss_pred hcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043999 153 KSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQ 200 (574)
Q Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 200 (574)
+.|+++.|+++.+++. +...|..|.+...+.|+++-|.+.|.+
T Consensus 17 ~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4444444444444331 344444444444444444444444444
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.08 E-value=0.043 Score=49.31 Aligned_cols=83 Identities=14% Similarity=0.030 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 043999 436 MEKAFEMYSLMQKSGFSPD---VYTYGVLIHGLCMK-----GNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKE-GNS 506 (574)
Q Consensus 436 ~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~ 506 (574)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++..+.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34555556666554 344 34566666666663 66777777777666643322355666666666663 666
Q ss_pred HHHHHHHHHHHHCC
Q 043999 507 YRALRLLGEMNEKG 520 (574)
Q Consensus 507 ~~A~~~~~~m~~~g 520 (574)
++|.+.+++.+...
T Consensus 257 ~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 257 AGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 77777777666643
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.82 E-value=0.11 Score=39.05 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043999 454 DVYTYGVLIHGLCMKGNMKEASKLFNSMWETK------LEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNI 525 (574)
Q Consensus 454 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 525 (574)
+..-+..+...+.+.|+++.|...|+.+.+.. -.+....+..+..+|.+.|++++|...++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 33444556666666777777777766665431 122455667777777777777777777777766 34443
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.73 Score=38.02 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=91.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043999 116 HLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAF 195 (574)
Q Consensus 116 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 195 (574)
..+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.++-.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 45789999999998876 2678999999999999999999999999874 445555667778888877
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 196 EVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKM 271 (574)
Q Consensus 196 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 271 (574)
++-+.....| -++.....+.-.|+++++.++|.+..+ |.--+-.....|..+.|.++.+.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 7766665544 256666777788999999998865432 111111222356666777776654
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.68 E-value=0.069 Score=40.17 Aligned_cols=72 Identities=10% Similarity=-0.039 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHH
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSG------VRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYS 177 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (574)
..-+..|...+.+.|++..|...|+..++.- -.+....+..+..++.+.|++++|+..++++....|.+..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3445678888888888888888888876531 11234455566666666666666666666665544444444
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.48 E-value=0.14 Score=40.53 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=57.6
Q ss_pred CCcchhHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH-HHHHHHHHH------HhcCChhHHHHHHHHcc
Q 043999 102 PVTKSRLYESIIDAHLKSRLS------DQALFYFHQMLDSGVRPRSN-TFNSLLIFV------IKSCSFDKGWLFFSENR 168 (574)
Q Consensus 102 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~------~~~g~~~~A~~~~~~~~ 168 (574)
.+.|..+|-..+...-+.|++ ++.+++|++.... ++|+.. .|...+..+ ...++.++|..+|+.+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356777888888888888998 8888999988875 566421 222222211 12245555555555543
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043999 169 CKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGF 206 (574)
Q Consensus 169 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 206 (574)
...+.=...|......-.++|++..|++++.+.+..+.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 22111144444444445555555555555555555443
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.33 E-value=0.73 Score=35.73 Aligned_cols=66 Identities=15% Similarity=0.038 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043999 490 DVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGL 556 (574)
Q Consensus 490 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 556 (574)
....+..++.+...|+-+.-.+++..+... -+|++.....+..+|.+.|+..+|.+++.++.++|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444555555566666655555554332 345555555556666666666666666666665554
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.10 E-value=0.12 Score=40.01 Aligned_cols=85 Identities=13% Similarity=0.015 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 043999 472 KEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYR---ALRLLGEMNEKGLVP--NIASYSSTIGVLCQDGKWPEAEV 546 (574)
Q Consensus 472 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~ 546 (574)
..+.+-|.+....+. |+..+--.+.+++.+..+... ++.++++..+.+ .| .....-.+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444433332 445555555555555554443 555555555542 12 11222334445556666666666
Q ss_pred HHHHHHHcCCCCCH
Q 043999 547 LLNQMLKLGLKPSV 560 (574)
Q Consensus 547 ~~~~m~~~g~~p~~ 560 (574)
+++.+++. +|+.
T Consensus 96 ~~~~lL~~--eP~n 107 (126)
T 1nzn_A 96 YVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHH--CTTC
T ss_pred HHHHHHHh--CCCC
Confidence 66666644 4543
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.08 E-value=4.3 Score=43.22 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=136.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCChhhHHHHHHH
Q 043999 289 EYCNEGKVSEGFKLFDEMRHREVACN--VVTYNTLICGLCKEMRVQEAERLLDQMKMAGI-------SPNVITYNKLIDG 359 (574)
Q Consensus 289 ~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-------~~~~~~~~~li~~ 359 (574)
+....|+.++++.+++.....+...+ ...-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 35566777777777766554211112 22333444556666666677777776554321 0111112222223
Q ss_pred H--HhcCCHHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH--HHHH
Q 043999 360 F--CDAGETDKAFRLFNQLKSNGQSPSVVT--YN--VLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILI--DSFV 431 (574)
Q Consensus 360 ~--~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~ 431 (574)
+ .-.++ +++.+.+..+... .+... .. ++...++..|+.+....++..+.+.. +..+...+. -++.
T Consensus 463 la~~GS~~-eev~e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHhcCCCC-HHHHHHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 3 33344 3555555555543 12211 22 23334556777777777877776542 222333333 3445
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043999 432 RSDDMEKAFEMYSLMQKSGFSPDVYTY--GVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRA 509 (574)
Q Consensus 432 ~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 509 (574)
..|+.+.+..+.+.+.... .|....- .++.-+|+..|+.....+++..+.+. ...+..-...+.-++...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 7788888888888887642 2322222 23445677888887777788888763 222333333334445556777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 043999 510 LRLLGEMNEKGLVPNIASYSSTIGVLCQDGKW-PEAEVLLNQML 552 (574)
Q Consensus 510 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~ 552 (574)
.++++.+.+.+ .|....-..+.-+....|+. .++...+..+.
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 77777666653 44444333344444445543 57777888776
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.85 E-value=0.00025 Score=67.84 Aligned_cols=217 Identities=12% Similarity=0.067 Sum_probs=140.5
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHH
Q 043999 104 TKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIK 183 (574)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 183 (574)
.|+..|..+|....+.|.+++-+..+....+..- ++..=+.|+-+|++.++..+-.+++ ..||+.-...+.+
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI------NGPNNAHIQQVGD 152 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT------SCCSSSCTHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH------cCCCcccHHHHHH
Confidence 4667788999999999999999888776665432 3444557888999998866432221 2355555566667
Q ss_pred HHHhcCChhHHHHHHHHHHHCC--------------------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043999 184 GCCEAGDLNKAFEVLNQLEEMG--------------------FSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVA 243 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 243 (574)
-|...|.++.|.-+|..+.... -..++.||-.+-.+|...+++.-|...--.+.-
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv----- 227 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----- 227 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----
Confidence 7777777777766665432110 123677899999999999988877654444432
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHH
Q 043999 244 TQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHR-EVAC------NVV 316 (574)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~------~~~ 316 (574)
.+.-...++..|-..|.+++-+.+++.-... -+.....|+-|.-.|++- +.++-.+.++....+ +++- ...
T Consensus 228 hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 228 HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 2223345677789999999999999988743 234677888888888875 345444444433222 1110 234
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 043999 317 TYNTLICGLCKEMRVQEAE 335 (574)
Q Consensus 317 ~~~~li~~~~~~~~~~~A~ 335 (574)
.|.-++-.|++-.+++.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 5666666666666666554
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.70 E-value=0.17 Score=39.05 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 043999 434 DDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKE---ASKLFNSMWETKLEP--NDVVYNMMIFGYCKEGNSYR 508 (574)
Q Consensus 434 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 508 (574)
..+..+.+-|......| .++..+--.+..++.+..+... ++.++++....+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 33445555555555544 3666666667777777766544 778888777653 13 33444556667788888888
Q ss_pred HHHHHHHHHHCCCCCC
Q 043999 509 ALRLLGEMNEKGLVPN 524 (574)
Q Consensus 509 A~~~~~~m~~~g~~p~ 524 (574)
|.+.++.+++ +.|+
T Consensus 93 A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHH--hCCC
Confidence 8888888887 4554
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.68 E-value=0.26 Score=39.16 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=43.3
Q ss_pred CHhHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHHH------HHhcCCHHHHHHHHHHHHhCC
Q 043999 419 SEVTYTILIDSFVRSDDM------EKAFEMYSLMQKSGFSPDVY-TYGVLIHG------LCMKGNMKEASKLFNSMWETK 485 (574)
Q Consensus 419 ~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~li~~------~~~~g~~~~A~~~~~~~~~~~ 485 (574)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.++...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555655 5555566555543 344321 11111111 112244455555555544321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 486 LEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKG 520 (574)
Q Consensus 486 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 520 (574)
-+- ...|.....--.++|+.++|.+++.+....+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 111 3333333333344555555555555555443
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.89 E-value=0.46 Score=49.42 Aligned_cols=129 Identities=13% Similarity=0.043 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHccc-------CCC-CCH--
Q 043999 108 LYESIIDAHLKSRL-SDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSF-DKGWLFFSENRC-------KVE-LDV-- 175 (574)
Q Consensus 108 ~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~-------~~~-~~~-- 175 (574)
.-.+|+..+...|+ .+.|+.+|+++.+....-+......++..+.+.++- -+|.++..+... ..+ .+.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34555555555666 588999999998864221222223334443333322 245555544331 111 121
Q ss_pred --------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 176 --------YSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIG 237 (574)
Q Consensus 176 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 237 (574)
.....-++.+...|+++-|+++-++..... +-+-.+|..|..+|.+.|+++.|+-.+..++
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 123333556777899999999999988753 2356799999999999999999998888774
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.43 E-value=6.4 Score=36.01 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=42.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHH
Q 043999 279 SLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKE---MRVQEAERLLDQMKMAGISPNVITYNK 355 (574)
Q Consensus 279 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~g~~~~~~~~~~ 355 (574)
|+.....+...|.+.|++.+|+..|-.-... +...+..++.-+... |...++--+. -.+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~----s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHD----SMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH----HHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc----cHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHH
Confidence 6667777778888888888877766411111 234444444333333 3333322111 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 043999 356 LIDGFCDAGETDKAFRLFNQLK 377 (574)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~~~ 377 (574)
++ .|.-.++...|..+++...
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHH
Confidence 22 2445677777777777654
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.38 E-value=8.7 Score=37.45 Aligned_cols=50 Identities=6% Similarity=0.117 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 294 GKVSEGFKLFDEMRHR-----EVACNVVTYNTLICGLCKEMRVQEAERLLDQMKM 343 (574)
Q Consensus 294 g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 343 (574)
|++++|++.+-.+.+. +..........++..|...++++.....+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777766555432 2223445566677777777777777666655543
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.32 E-value=14 Score=39.54 Aligned_cols=276 Identities=11% Similarity=0.074 Sum_probs=155.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHH
Q 043999 253 CGLFKNGLQKDGFEFYEKMQLNGVSPS--LYTYNCLIHEYCNEGKVSEGFKLFDEMRHREV-------ACNVVTYNTLIC 323 (574)
Q Consensus 253 ~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~~~~~li~ 323 (574)
-+....|+.++++.++...+..+-..+ ...-..+.-+....|..+++...+.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 456678888888888877664211122 22334444556667776778887776654321 011222233333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043999 324 GLCKEMR-VQEAERLLDQMKMAGISPNV--ITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGN 400 (574)
Q Consensus 324 ~~~~~~~-~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 400 (574)
++.-.|. -+++...+..+.... .+.. ..--+|...+...|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 4443343 245566666655532 1111 112234445567788888888888777642 2122223333444557899
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043999 401 SKMASDLVREMEERGITPSEVTY--TILIDSFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLF 478 (574)
Q Consensus 401 ~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 478 (574)
.+.+..+++.+... ..|....- .++.-+|+..|+.....++++.+.+.. ..++.....+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999998888764 12222222 233456788899888888999888642 233333333334455567777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043999 479 NSMWETKLEPNDVVYNMMIFGYCKEGNS-YRALRLLGEMNEKGLVPNIASYSSTIGVLC 536 (574)
Q Consensus 479 ~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 536 (574)
+.+.+.+ .|....-..+.-+....|.. .+|++.+..+... +|..+-...+.++.
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALS 672 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHH
Confidence 7666543 45554444455555555554 6788899998763 45544444444443
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.41 E-value=1 Score=32.78 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043999 470 NMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTI 532 (574)
Q Consensus 470 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 532 (574)
+.=+..+-++.+...++.|++....+.+.+|.+.+++..|.++++-...+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34456666666666667777777777777777777777777777776654 233334455444
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.90 E-value=1.1 Score=42.93 Aligned_cols=55 Identities=7% Similarity=-0.042 Sum_probs=25.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 496 MIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQM 551 (574)
Q Consensus 496 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 551 (574)
++..+...|++++|+..++.+... .+-+...|..++.++.+.|+..+|.+.|+++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444455555555544444443 1224444455555555555555555554443
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.82 E-value=13 Score=36.27 Aligned_cols=241 Identities=12% Similarity=0.085 Sum_probs=138.5
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH----h
Q 043999 328 EMRVQEAERLLDQMKMA-----GISPNVITYNKLIDGFCDAGETDKAFRLFNQLKSN-GQSPSVVTYNVLIRAFS----K 397 (574)
Q Consensus 328 ~~~~~~A~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~----~ 397 (574)
.+++++|++.+-.+.+. ...........++..|...++++...+.+..+.+. |..+ .....+++.+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 36788888877665542 23444566778889999999999988877766543 3222 22334444332 2
Q ss_pred cCChHHHHHHHHHHHH--CCCC-----C---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHH
Q 043999 398 AGNSKMASDLVREMEE--RGIT-----P---SEVTYTILIDSFVRSDDMEKAFEMYSLMQK--SGFSPD---VYTYGVLI 462 (574)
Q Consensus 398 ~g~~~~A~~~~~~m~~--~~~~-----p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~~~~~li 462 (574)
....+.... ....+ ..+. . .......|...+...|++.+|..++..+.. .|..+. ...+...+
T Consensus 107 ~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 232222111 11111 1111 1 112235567778888999999998888753 232221 24566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH---
Q 043999 463 HGLCMKGNMKEASKLFNSMWE----TKLEPN--DVVYNMMIFGYCKEGNSYRALRLLGEMNEK-GLVPNIASYSSTI--- 532 (574)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~--- 532 (574)
..|...+++.+|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++.+. ....|...+...+
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 788888999999888887642 222232 335667777788888888888888877653 1122333332222
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHhhhhc
Q 043999 533 -GVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYRAKNN 572 (574)
Q Consensus 533 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 572 (574)
.+..-.+..++-..++.........++...|..|+.+|.+
T Consensus 265 v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~ 305 (445)
T 4b4t_P 265 VYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 305 (445)
T ss_dssp HHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHh
Confidence 2223334444444444444444444556677777777754
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.12 E-value=7.7 Score=43.16 Aligned_cols=148 Identities=7% Similarity=-0.077 Sum_probs=88.3
Q ss_pred HHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--------------------CC-
Q 043999 147 LLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEE--------------------MG- 205 (574)
Q Consensus 147 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------------~g- 205 (574)
++..+.+.+..+-+.++..... .+...--.++.++...|++++|.+.|++... ..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4444555555555544433222 2333444455555555666666655544311 00
Q ss_pred -CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043999 206 -FSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQ----HTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSL 280 (574)
Q Consensus 206 -~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 280 (574)
...-..-|..++..+-+.+.++.+.++-....+.....+. ..|..+.+.+...|++++|...+..+..... -.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KK 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HH
Confidence 0111234677888888888888888877766543222121 2577788888888999999888888876543 35
Q ss_pred hhHHHHHHHHHhcCCHHHHH
Q 043999 281 YTYNCLIHEYCNEGKVSEGF 300 (574)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~ 300 (574)
.....|+...|..|..+.-.
T Consensus 972 ~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhh
Confidence 56777777778777766544
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.12 E-value=5.6 Score=44.27 Aligned_cols=151 Identities=12% Similarity=0.074 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-------------
Q 043999 179 GILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGEL----GL------------- 241 (574)
Q Consensus 179 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~------------- 241 (574)
..++..+.+.+..+-+.++..-. +.+....-.+..++...|++++|.+.|++.... +.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34667788889998887765433 235555566778899999999999999775210 00
Q ss_pred -----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043999 242 -----VATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSL----YTYNCLIHEYCNEGKVSEGFKLFDEMRHREVA 312 (574)
Q Consensus 242 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 312 (574)
..-..-|..++..+.+.+.++.+.++-...++....-+. ..|..+.+.+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 001234778899999999999999988877754322221 2578889999999999999999988876644
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 313 CNVVTYNTLICGLCKEMRVQEAER 336 (574)
Q Consensus 313 ~~~~~~~~li~~~~~~~~~~~A~~ 336 (574)
-......++...|..|+.+.-..
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhC
Confidence 45678888888888887765443
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.11 E-value=3.3 Score=32.11 Aligned_cols=72 Identities=7% Similarity=0.033 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043999 487 EPNDVVYNMMIFGYCKEGNS---YRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSV 560 (574)
Q Consensus 487 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 560 (574)
.|+..+--.+.+++.+..+. .+++.+++++.+.+..-....+-.+.-++.+.|++++|+++.+.+++. .|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 34444444445555554432 345555555554321011233334444555556666666665555533 4543
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.39 E-value=1.3 Score=42.55 Aligned_cols=128 Identities=14% Similarity=0.089 Sum_probs=74.3
Q ss_pred cchhHHHHHHHHHH---hcCChHHHHHHHHHHHhC--CCC-CCHHHHHHHHHHHHhcCCh-hHHHHHHHHcccCCCCCHH
Q 043999 104 TKSRLYESIIDAHL---KSRLSDQALFYFHQMLDS--GVR-PRSNTFNSLLIFVIKSCSF-DKGWLFFSENRCKVELDVY 176 (574)
Q Consensus 104 ~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~--g~~-p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~ 176 (574)
.|...|..++..-. ..|+++.|.+.+++++.. |.. ++... ..+ ......+++.. ..
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~-----------~~w~~~~r~~l~~~~------~~ 172 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-----------FQFVEPFATALVEDK------VL 172 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-----------STTHHHHHHHHHHHH------HH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc-----------hhHHHHHHHHHHHHH------HH
Confidence 35566777665433 458999999999998763 321 11100 011 11111222211 12
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCChhhHH
Q 043999 177 SFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIG-----ELGLVATQHTYT 249 (574)
Q Consensus 177 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~ 249 (574)
+...++..+...|+.++|...++.+.... +-+...+..+|.++.+.|+..+|++.|++.. +.|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 33445666677777777777777766542 3366677777777777777777777777653 347777665543
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.38 E-value=2.2 Score=44.40 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 501 CKEGNSYRALRLLGEMNEKGLVPN-IASYSSTIGVLCQDGKWPEAEVLLNQM 551 (574)
Q Consensus 501 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 551 (574)
...|+++-|+++.++.+.. .|+ -.+|..|..+|.+.|+++.|+-.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3345555555555555542 232 345555555555555555555554444
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.26 E-value=4.8 Score=31.20 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043999 452 SPDVYTYGVLIHGLCMKGN---MKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNI 525 (574)
Q Consensus 452 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 525 (574)
.|+..+--.+..++.+..+ ..+++.++++..+.+..-....+-.|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 4566555555566666554 456777777777654222345555666677788888888888888877 45553
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.84 E-value=2.4 Score=32.75 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043999 471 MKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTI 532 (574)
Q Consensus 471 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 532 (574)
.=+..+-++.+...++.|++......+.+|.+.+++..|.++|+-...+ ..+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3455666666666677777777777777777777777777777777665 333444555554
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.69 E-value=6.5 Score=28.67 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043999 508 RALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILY 567 (574)
Q Consensus 508 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 567 (574)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++++-.+.+ ..+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 44444555555555566666666666666666666666666555533 122233454444
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.46 E-value=9.1 Score=30.10 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 453 PDVYTYGVLIHGLCMKGN---MKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 453 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
|+..+--.+..++.+..+ ..+++.++++....+..-.....-.|.-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444344444444433 334555555555432221233333444455555555555555555555
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.57 E-value=12 Score=29.49 Aligned_cols=73 Identities=7% Similarity=0.033 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043999 487 EPNDVVYNMMIFGYCKEGNS---YRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVS 561 (574)
Q Consensus 487 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 561 (574)
.|+..+--.+.+++.+..+. .+++.+++++...+..-.....-.+.-++.+.|++++|+++.+.+++. +|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 57788877888889887754 578999999988532212344456667999999999999999999976 78764
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.19 E-value=3.9 Score=33.15 Aligned_cols=120 Identities=5% Similarity=-0.068 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHcccC---CCCC
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDS-GVRPRS-------NTFNSLLIFVIKSCSFDKGWLFFSENRCK---VELD 174 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~ 174 (574)
...+-.=++.+...|.++.|+-+.+.++.. +..|+. .++..+.+++...|++.+|...|++.... .+.+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666678888899999999888876532 123332 24556678888999999999999885432 1111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 175 VYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGE 238 (574)
Q Consensus 175 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 238 (574)
..+...+. ....... .....++...--.+..+|.+.+++++|+.+++.+..
T Consensus 100 ~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 100 SKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred CCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 11111110 0000000 001122344445577778888888888888877644
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.64 E-value=11 Score=29.13 Aligned_cols=59 Identities=12% Similarity=0.154 Sum_probs=33.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Q 043999 509 ALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYR 568 (574)
Q Consensus 509 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 568 (574)
..+-++.+...++.|++.+....+.+|.+.+++..|.++++-.+.+ ..+...+|..+++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3444555555556666666666666666666666666666666543 2333444555543
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.24 E-value=33 Score=31.54 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=43.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 043999 349 NVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILID 428 (574)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 428 (574)
|......+...|.+.+++.+|...|- .|..++...+..++.-+.+.+...++ |...-.+++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL- 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL- 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-
Confidence 55666777788888888888877762 23333345555554444443332222 222222222
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 043999 429 SFVRSDDMEKAFEMYSLMQ 447 (574)
Q Consensus 429 ~~~~~g~~~~A~~~~~~~~ 447 (574)
.|...+++..|..+++...
T Consensus 196 ~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 2455677777777665543
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.09 E-value=34 Score=31.50 Aligned_cols=111 Identities=8% Similarity=-0.020 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCCCHHhHHHHHHH
Q 043999 144 FNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVL----NQLEEMGFSPNVVIYTSLIDG 219 (574)
Q Consensus 144 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~li~~ 219 (574)
+.++..-|.+++++++|++++..-. ..+.+.|+...|.++- +-..+.++++|......++..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4445566778888888887764422 3455666666655544 444556777777776677766
Q ss_pred HHhcCCHH-HHHHHHHHHH----hCC--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 043999 220 CCKNGDIE-RAKMLFRKIG----ELG--LVATQHTYTVLICGLFKNGLQKDGFEFY 268 (574)
Q Consensus 220 ~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 268 (574)
+.....-+ +=..+.+++. +.| ..-|+.....+...|.+.+++.+|..-|
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 65544311 1111222221 111 2224455555556666666666655544
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.44 E-value=14 Score=26.75 Aligned_cols=78 Identities=17% Similarity=0.081 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 435 DMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLG 514 (574)
Q Consensus 435 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 514 (574)
..++|..|-+-+...+. ...+--+-+..+.+.|++++|..+.+.. +.||...|-.|-. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555554431 2222222334456667777766655443 3566666655543 35666666666666
Q ss_pred HHHHCC
Q 043999 515 EMNEKG 520 (574)
Q Consensus 515 ~m~~~g 520 (574)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666554
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.42 E-value=4.3 Score=32.92 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHH
Q 043999 425 ILIDSFVRSDDMEKAFEMYSLMQKSG-FSPDV-------YTYGVLIHGLCMKGNMKEASKLFNSMWETK-LEP-NDVVYN 494 (574)
Q Consensus 425 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~ 494 (574)
.=+..+...+.++.|.-+.+.+.... ..|+. .++..+.+++...|++..|...|++.++.. .-+ +..+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33555667777777777776654321 12331 245556677777777777777777765320 001 111110
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 495 MMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGVLCQDGKWPEAEVLLNQML 552 (574)
Q Consensus 495 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 552 (574)
.+. ....... .....++...---+..+|.+.|++++|+.+++.+.
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 000 0000000 00112233333446678888888888888877654
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.03 E-value=15 Score=26.71 Aligned_cols=78 Identities=13% Similarity=0.042 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 435 DMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLG 514 (574)
Q Consensus 435 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 514 (574)
..++|..|-+-+...+. ...+--+-+..+.+.|++++|..+.+.. +.||...|-.|-. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45566666555555432 2222223334566677777777665544 3566666665543 35566666666666
Q ss_pred HHHHCC
Q 043999 515 EMNEKG 520 (574)
Q Consensus 515 ~m~~~g 520 (574)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 666554
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.42 E-value=37 Score=30.95 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=43.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHhHHHH
Q 043999 349 NVITYNKLIDGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKA---GNSKMASDLVREMEERGITPSEVTYTI 425 (574)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ 425 (574)
++.....+...|.+.|++.+|...|- .|-.-|...+..++.-+.+. |...++--.+ -.+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHH
Confidence 56667777788888888888877663 11111344454444444333 4333322111 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 043999 426 LIDSFVRSDDMEKAFEMYSLMQ 447 (574)
Q Consensus 426 li~~~~~~g~~~~A~~~~~~~~ 447 (574)
++ .|...++...|..+++...
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHH
Confidence 22 2445677777777776553
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.98 E-value=12 Score=36.13 Aligned_cols=97 Identities=7% Similarity=-0.080 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHH--HH
Q 043999 422 TYTILIDSFVRSDDMEKAFEMYSLMQKSG--FSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWET---KLEPNDVV--YN 494 (574)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~--~~ 494 (574)
+...+.+.|.+.|++++|.+++.++...- ...-...+-.++..+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45566677777777777777777776532 1222345666666677777777777777665432 22222211 01
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 043999 495 MMIFGYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 495 ~li~~~~~~g~~~~A~~~~~~m~~ 518 (574)
.-+..+...+++.+|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223345667766666665544
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.88 E-value=60 Score=33.03 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=123.9
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH--HHHHHHcccC----------
Q 043999 103 VTKSRLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKG--WLFFSENRCK---------- 170 (574)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A--~~~~~~~~~~---------- 170 (574)
+.+...-.....+....|+..+|....+.+...|. ..+..+..++..+.+.|..... +.-++.+...
T Consensus 99 p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~ 177 (618)
T 1qsa_A 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLA 177 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555566677788889999889998888887763 3566788888888887766542 2222222211
Q ss_pred --CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 043999 171 --VELDVYS-FGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVI---YTSLIDGCCKNGDIERAKMLFRKIGELGLVAT 244 (574)
Q Consensus 171 --~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 244 (574)
++++... ...++..+. +...+...... ..++... +...+.-+.+ .+.+.|...+....+.... +
T Consensus 178 ~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~-~ 247 (618)
T 1qsa_A 178 GQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL-N 247 (618)
T ss_dssp HTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC-C
T ss_pred HhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC-C
Confidence 1111111 111111111 11111111110 1122221 1112223333 3778899988887654322 3
Q ss_pred hhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043999 245 QHTY----TVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTYNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNT 320 (574)
Q Consensus 245 ~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 320 (574)
.... ..+...+...+...++...+....... ++.....-.+....+.|+++.|...|+.|...... .....--
T Consensus 248 ~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW 324 (618)
T 1qsa_A 248 EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYW 324 (618)
T ss_dssp HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHH
Confidence 2222 222233333453556677776655442 33333444445556779999999999888653221 3333445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 043999 321 LICGLCKEMRVQEAERLLDQMKM 343 (574)
Q Consensus 321 li~~~~~~~~~~~A~~~~~~m~~ 343 (574)
+..++.+.|+.++|..+|+.+..
T Consensus 325 ~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 325 QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc
Confidence 56677788999999999888764
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.36 E-value=4.5 Score=35.83 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=29.5
Q ss_pred HhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043999 152 IKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEE 203 (574)
Q Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 203 (574)
.+.|++++|++....-.+..|.|...-..++..+|-.|++++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3555555555555554444455555555666666666666666665555554
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.41 E-value=30 Score=33.37 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 177 SFGILIKGCCEAGDLNKAFEVLNQLEEMG--FSPNVVIYTSLIDGCCKNGDIERAKMLFRKIG 237 (574)
Q Consensus 177 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 237 (574)
+...+...|.+.|++++|.+.+.++.... ...-...+-.++..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34556666666777777777766666532 12223455556666666667766666666653
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.65 E-value=56 Score=30.99 Aligned_cols=27 Identities=26% Similarity=0.089 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 281 YTYNCLIHEYCNEGKVSEGFKLFDEMR 307 (574)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 307 (574)
.....|...|.+.|+.++..+++...+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455667777777787777777776653
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.71 E-value=23 Score=25.72 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=5.4
Q ss_pred HHhcCCHHHHHHH
Q 043999 290 YCNEGKVSEGFKL 302 (574)
Q Consensus 290 ~~~~g~~~~A~~~ 302 (574)
+...|++++|..+
T Consensus 50 LmNrG~Yq~Al~l 62 (116)
T 2p58_C 50 LMNRGDYASALQQ 62 (116)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHcchhHHHHHHh
Confidence 3344444444433
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.49 E-value=22 Score=25.79 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=5.1
Q ss_pred HHhcCCHHHHHH
Q 043999 290 YCNEGKVSEGFK 301 (574)
Q Consensus 290 ~~~~g~~~~A~~ 301 (574)
+...|++++|..
T Consensus 49 LmNrG~Yq~Al~ 60 (115)
T 2uwj_G 49 LANQGRYQEALA 60 (115)
T ss_dssp HHHTTCHHHHHG
T ss_pred HHcchhHHHHHH
Confidence 334444444443
No 270
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=70.87 E-value=9.1 Score=33.04 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=21.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHH
Q 043999 116 HLKSRLSDQALFYFHQMLDSGVRPRSN--TFNSLLIFVIKSCSFDKGWLFFSE 166 (574)
Q Consensus 116 ~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~ 166 (574)
.++.|+.+.... +++.|..++.. .-.+.+...++.|+.+-...+++.
T Consensus 16 A~~~g~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 16 ATQYGIYERCRE----LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCChHHHHH----HHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 346666554443 34444433221 111234445566666655555544
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.03 E-value=23 Score=31.36 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=4.8
Q ss_pred HHHHHhcCChH
Q 043999 113 IDAHLKSRLSD 123 (574)
Q Consensus 113 i~~~~~~g~~~ 123 (574)
+...++.|+.+
T Consensus 9 L~~A~~~g~~~ 19 (285)
T 1wdy_A 9 LIKAVQNEDVD 19 (285)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHcCCHH
Confidence 33344455543
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.55 E-value=47 Score=27.89 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043999 436 MEKAFEMYSLMQKSGFSPD-VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEP 488 (574)
Q Consensus 436 ~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 488 (574)
..++..+|..|...|+.-. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555554443322 2334444445555555555555555555544444
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.33 E-value=43 Score=28.08 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=44.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043999 468 KGNMKEASKLFNSMWETKLEP-NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPN 524 (574)
Q Consensus 468 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 524 (574)
++...++.++|..|...|+.- -...|......+-..|++++|.++|+.-.+.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 455778888999888776543 456678888888888999999999999888877774
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.03 E-value=49 Score=29.06 Aligned_cols=48 Identities=13% Similarity=-0.020 Sum_probs=24.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHHHH
Q 043999 326 CKEMRVQEAERLLDQMKMAGISPNVIT--YNKLIDGFCDAGETDKAFRLF 373 (574)
Q Consensus 326 ~~~~~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~ 373 (574)
+..+.......+.+.+.+.|..++... -.+.+...++.|+.+-+..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 344554444556666666665544321 123344455667766544444
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.89 E-value=64 Score=26.97 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 367 DKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLM 446 (574)
Q Consensus 367 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 446 (574)
.++...+-...+. ++...-...+..+.+.+..+....+.+.+.+. +...-...+.++.+.+..+....+.+.+
T Consensus 18 ~~~~~~L~~~L~~---~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQD---DSYYVRRAAAYALGKIGDERAVEPLIKALKDE----DAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----CHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HhHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCC----CHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043999 447 QKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIA 526 (574)
Q Consensus 447 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 526 (574)
. .++..+-...+.++.+.|+ .++...+.++.+ .++..+-...+.++...|. .++...+.++.+ .++..
T Consensus 91 ~----~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~ 158 (211)
T 3ltm_A 91 K----DEDGWVRQSAAVALGQIGD-ERAVEPLIKALK---DEDWFVRIAAAFALGEIGD-ERAVEPLIKALK---DEDGW 158 (211)
T ss_dssp T----CSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHH
T ss_pred c----CCCHHHHHHHHHHHHHhCc-HHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHc---CCCHH
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHhhhhcCC
Q 043999 527 SYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSVSLYNILYRAKNNIE 574 (574)
Q Consensus 527 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 574 (574)
+-...+.++.+.|. +++...+.++.+. ++...-..-+.+..+++
T Consensus 159 vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 159 VRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
No 276
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=61.09 E-value=18 Score=30.98 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=6.9
Q ss_pred HHHHHHhcCCHHHHH
Q 043999 216 LIDGCCKNGDIERAK 230 (574)
Q Consensus 216 li~~~~~~g~~~~A~ 230 (574)
.+...++.|+.+-+.
T Consensus 45 ~L~~A~~~~~~~~v~ 59 (240)
T 3eu9_A 45 LLHWAAINNRIDLVK 59 (240)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCHHHHH
Confidence 344445555554333
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.69 E-value=1.1e+02 Score=28.58 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 317 TYNTLICGLCKEMRVQEAERLLDQMK 342 (574)
Q Consensus 317 ~~~~li~~~~~~~~~~~A~~~~~~m~ 342 (574)
....++.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 44667888888999999999888865
No 278
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.84 E-value=97 Score=27.41 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=70.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcC
Q 043999 429 SFVRSDDMEKAFEMYSLMQKSGFSPDVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPN----DVVYNMMIFGYCKEG 504 (574)
Q Consensus 429 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g 504 (574)
...+.|++++|++....-++.. +.|...-..++..+|-.|+++.|.+-++...+. .|+ ...|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 4567788888888887777765 667777778888888888888888888877764 333 2234444432
Q ss_pred CHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 043999 505 NSYRALRLLGEMNEKGLVP-----NIASYSSTIGVLC--QDGKWPEAEVLLNQMLKL 554 (574)
Q Consensus 505 ~~~~A~~~~~~m~~~g~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 554 (574)
...-.+...-+-.| ...-...++.++. ..|+.++|..+-+++.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333322222 1222334444443 458889998888888754
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=58.57 E-value=81 Score=26.79 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=11.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC
Q 043999 185 CCEAGDLNKAFEVLNQLEEMGFS 207 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~g~~ 207 (574)
.++.|+.+....+++.+.+.|..
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Confidence 34455555555555544444433
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=58.13 E-value=73 Score=30.44 Aligned_cols=81 Identities=12% Similarity=-0.014 Sum_probs=34.8
Q ss_pred HHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCC
Q 043999 148 LIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVV--IYTSLIDGCCKNGD 225 (574)
Q Consensus 148 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~ 225 (574)
+..-+..|+.+-...+++.-......+.... ..+...+..|+.+-+.-++ +.|..++.. .-.+.+...++.|+
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 4444566777666666654222111121111 2233445556655444333 334333221 11234444556666
Q ss_pred HHHHHHHH
Q 043999 226 IERAKMLF 233 (574)
Q Consensus 226 ~~~A~~~~ 233 (574)
.+-..-++
T Consensus 93 ~~~v~~Ll 100 (437)
T 1n11_A 93 TNMVKLLL 100 (437)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444333
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=56.66 E-value=1.1e+02 Score=29.19 Aligned_cols=208 Identities=13% Similarity=0.078 Sum_probs=94.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcC
Q 043999 112 IIDAHLKSRLSDQALFYFHQMLDSGVRPRSN--TFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAG 189 (574)
Q Consensus 112 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 189 (574)
.+...+..|+.+-+.. +++.|..|+.. ...+.+...+..|+.+-+..+++.-......+....+ .+...++.|
T Consensus 17 ~L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCC
Confidence 3444456777664444 44455554422 1123455556778877776666643221111211122 233445667
Q ss_pred ChhHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043999 190 DLNKAFEVLNQLEEMGFSPNVV--IYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEF 267 (574)
Q Consensus 190 ~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 267 (574)
+.+-.. .+.+.|..|+.. .-.+.+...++.|+.+-...+++.-..... .+..-+ +.+...+..|+.+ +
T Consensus 92 ~~~~v~----~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~-t~L~~A~~~g~~~----~ 161 (437)
T 1n11_A 92 HTNMVK----LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGF-TPLHVAAKYGKVR----V 161 (437)
T ss_dssp CHHHHH----HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSC-CHHHHHHHTTCHH----H
T ss_pred CHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCC-CHHHHHHHcCCHH----H
Confidence 765443 444445444422 112344556677887766665543211111 111112 2344455666654 4
Q ss_pred HHHHHHCCCCCCHhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHH
Q 043999 268 YEKMQLNGVSPSLYT--YNCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTY--NTLICGLCKEMRVQEAERLL 338 (574)
Q Consensus 268 ~~~~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~~~~A~~~~ 338 (574)
.+.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++...+ .+.+...++.|+.+-+..++
T Consensus 162 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 444555555544321 112233445566654 34444455544433211 12333445566655444333
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.11 E-value=66 Score=27.39 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=41.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHH
Q 043999 216 LIDGCCKNGDIERAKMLFRKIGELGLVATQHT--YTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSLYTY--NCLIHEYC 291 (574)
Q Consensus 216 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~--~~li~~~~ 291 (574)
.+...++.|+.+....+++.+.+.+..++... -.+.+...+..|+.+ +++.+.+.|..++.... .+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 44556677888777777776665554433221 112334445556543 34444455554433211 12233344
Q ss_pred hcCCHHHHHHHHHH
Q 043999 292 NEGKVSEGFKLFDE 305 (574)
Q Consensus 292 ~~g~~~~A~~~~~~ 305 (574)
..|+.+-...+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 55665544444433
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.48 E-value=1.5e+02 Score=29.21 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH--HHHH-HHHHHHHhcCChhHHHHHHHHcccC
Q 043999 106 SRLYESIIDAHLKSRLSDQALFYFHQMLDSGV-RPRS--NTFN-SLLIFVIKSCSFDKGWLFFSENRCK 170 (574)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~~--~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~ 170 (574)
..++|.|++.|...+.++.|..+..+..-.-. .+|. .+|. .+.....-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46677777777777777777777776531100 0111 1121 1234555667777777766665544
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.88 E-value=70 Score=28.47 Aligned_cols=12 Identities=0% Similarity=-0.194 Sum_probs=5.8
Q ss_pred HHhcCChHHHHH
Q 043999 116 HLKSRLSDQALF 127 (574)
Q Consensus 116 ~~~~g~~~~A~~ 127 (574)
.++.|+.+-+..
T Consensus 38 A~~~g~~~~v~~ 49 (285)
T 3kea_A 38 AIADNNVRLVCT 49 (285)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCCHHHHHH
Confidence 345566554433
No 285
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=53.70 E-value=85 Score=25.78 Aligned_cols=26 Identities=8% Similarity=0.157 Sum_probs=11.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043999 254 GLFKNGLQKDGFEFYEKMQLNGVSPS 279 (574)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~~g~~p~ 279 (574)
..+..|..+.-.++.+.+++.|..++
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33344444444444444555554443
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=50.62 E-value=22 Score=31.18 Aligned_cols=53 Identities=13% Similarity=-0.009 Sum_probs=28.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHh-------HHHHHHHHH--hcCCHHHHHHHHHHH
Q 043999 184 GCCEAGDLNKAFEVLNQLEEMGFSPNVVI-------YTSLIDGCC--KNGDIERAKMLFRKI 236 (574)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~li~~~~--~~g~~~~A~~~~~~~ 236 (574)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34566777777777776666555444322 222332221 456666666665543
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.29 E-value=1e+02 Score=24.50 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043999 509 ALRLLGEMNEKGLVPN-IASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKP 558 (574)
Q Consensus 509 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 558 (574)
+.++|..|..+|+--. ...|......+...|++.+|..+++.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555443322 2334444445555555555555555555544444
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.09 E-value=1.1e+02 Score=26.42 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=10.6
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 043999 182 IKGCCEAGDLNKAFEVLNQLE 202 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~ 202 (574)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 344445555555555555443
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.99 E-value=74 Score=28.30 Aligned_cols=6 Identities=33% Similarity=0.307 Sum_probs=2.3
Q ss_pred hcCCHH
Q 043999 327 KEMRVQ 332 (574)
Q Consensus 327 ~~~~~~ 332 (574)
..|..+
T Consensus 170 ~~g~~~ 175 (285)
T 3kea_A 170 KNGHVD 175 (285)
T ss_dssp HTTCHH
T ss_pred HcChHH
Confidence 334433
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=47.74 E-value=1.4e+02 Score=27.07 Aligned_cols=27 Identities=0% Similarity=-0.066 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHcccC
Q 043999 144 FNSLLIFVIKSCSFDKGWLFFSENRCK 170 (574)
Q Consensus 144 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 170 (574)
...++.-|...|+.++|...++++...
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 456777788888888888888887643
No 291
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=47.45 E-value=1.2e+02 Score=24.92 Aligned_cols=65 Identities=9% Similarity=-0.027 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCH
Q 043999 216 LIDGCCKNGDIERAKMLFRKIGELGLVATQH---TYTVLICGLFK-NGLQKDGFEFYEKMQLNGVSPSL 280 (574)
Q Consensus 216 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~-~g~~~~a~~~~~~~~~~g~~p~~ 280 (574)
.+...+..|+.+.-.++.+-+.+.|..++.. -++.|..++.. ..+.....++.+.+++.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 4444455555555455555555555444322 12222222111 12233344555556666655543
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.34 E-value=1.1e+02 Score=24.41 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043999 474 ASKLFNSMWETKLEP-NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVP 523 (574)
Q Consensus 474 A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 523 (574)
+.++|..|...|+-- -...|......+-..|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556666666554432 24445555566666666666666666666655555
No 293
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.24 E-value=1.9e+02 Score=27.33 Aligned_cols=297 Identities=11% Similarity=-0.038 Sum_probs=152.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC---CHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH-
Q 043999 245 QHTYTVLICGLFKNGLQKDGFEFYEKMQLNG-VSP---SLYTYNCLIHEYCNE-GKVSEGFKLFDEMRHREVACNVVTY- 318 (574)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~p---~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~- 318 (574)
..+...|...|.+.|+.++..+++......= .-| .......+++.+... +..+.-.++..+..+..-. +-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4567788999999999999999988765320 011 123356677777664 3344444444444332100 12233
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHH
Q 043999 319 -----NTLICGLCKEMRVQEAERLLDQMKMAGISPNV-----ITYNKLIDGFCDAGETDKAFRLFNQLKSN--GQSPSVV 386 (574)
Q Consensus 319 -----~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~ 386 (574)
.-++..|...|++.+|.+++..+.+.=-..|. ..+..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25678888899999998888887764212221 23445566777888888888888776542 1223333
Q ss_pred HHHHH----HHHHH-hcCChHHHHHHHHHHHHCCCCCCHhHHH-----HHHHHHHhcCCHHHHHHHHH-H-HHHCCCCCC
Q 043999 387 TYNVL----IRAFS-KAGNSKMASDLVREMEERGITPSEVTYT-----ILIDSFVRSDDMEKAFEMYS-L-MQKSGFSPD 454 (574)
Q Consensus 387 ~~~~l----i~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~-~-~~~~~~~~~ 454 (574)
.-..+ ...+. ..+++..|...|-+..+.--..+...+. .++.+.. .++..+...++. . .... ..|+
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-LGQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-cCCHHHHHHHhcccccccc-CCcc
Confidence 22111 22345 6788888888777664321111111111 1111112 222222222221 1 1222 2455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043999 455 VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNIASYSSTIGV 534 (574)
Q Consensus 455 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 534 (574)
...+..++.++ ..+++.+..++++.... .+..|......+-..+-+ -. ...+.++.+ +-...++..+...
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~--Ir---~~~L~~i~~---pYsrIsl~~iA~~ 325 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT--ML---EQNLCRIIE---PYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH--HH---HHHHHHHHT---TCSEEEHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH--HH---HHHHHHHhH---hhceeeHHHHHHH
Confidence 55555666554 45677776666665432 233344321111100000 00 111112221 1133555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC
Q 043999 535 LCQDGKWPEAEVLLNQMLKLGL 556 (574)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~g~ 556 (574)
+. . ..+++...+-+|+..|.
T Consensus 326 l~-l-s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 326 IQ-L-PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HT-C-CHHHHHHHHHHHHHTTS
T ss_pred HC-c-CHHHHHHHHHHHHHCCC
Confidence 43 2 67899999999987653
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.55 E-value=1.3e+02 Score=25.99 Aligned_cols=91 Identities=20% Similarity=0.023 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043999 425 ILIDSFVRSDDMEKAFEMYSLMQKS--GFSP----DVYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIF 498 (574)
Q Consensus 425 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 498 (574)
--++.+....++++|..+.++..+. +.++ +.......+..-.....-.-+..+.+++ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3467777888888888888776532 1121 1112222233223333333344444444 22 345555666667
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 043999 499 GYCKEGNSYRALRLLGEMNE 518 (574)
Q Consensus 499 ~~~~~g~~~~A~~~~~~m~~ 518 (574)
.+.+.|+.++|.++|=+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 77777777777777766554
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.40 E-value=64 Score=31.74 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH--Hh-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043999 175 VYSFGILIKGCCEAGDLNKAFEVLNQLEEMGF-SPNV--VI-YTSLIDGCCKNGDIERAKMLFRKIGEL 239 (574)
Q Consensus 175 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~-~~~li~~~~~~g~~~~A~~~~~~~~~~ 239 (574)
...+|.+++.|...+.++.|..+..+..---. .+|. .. +-.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45688888888888888888888887641000 0111 11 122445566678888887777776654
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.88 E-value=1e+02 Score=23.59 Aligned_cols=66 Identities=15% Similarity=0.305 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 043999 457 TYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGN--SYRALRLLGEMNEKGLVP 523 (574)
Q Consensus 457 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 523 (574)
....++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+....++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567788888889999999999887421111 22334444445444332 355777777777766543
No 297
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=43.86 E-value=1.9e+02 Score=26.25 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 043999 110 ESIIDAHLKSRLSDQALFYFHQMLDSGVRPR 140 (574)
Q Consensus 110 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 140 (574)
++.+...++.|+.+-+..+ ++.|..+|
T Consensus 26 ~t~L~~Av~~g~~~~V~~L----L~~Gadvn 52 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQL----LEGGANVN 52 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHH----HHHTCCTT
T ss_pred ChHHHHHHHcCCHHHHHHH----HHCCCCCC
Confidence 4455555677776544443 34454443
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.93 E-value=3.2e+02 Score=29.48 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=70.5
Q ss_pred HHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 043999 147 LLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDI 226 (574)
Q Consensus 147 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 226 (574)
++..+...|.++-|.++... .+.+...--.++.+|...|++++|.+.|++.- .|+..+...... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~ 880 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------L 880 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------G
T ss_pred HHHHHHHhcHHHHHHHHHhh----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------h
Confidence 45555666666655543322 33455555567777777788888877777643 233221111000 0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcC
Q 043999 227 ERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNGVSPSL----YTYNCLIHEYCNEG 294 (574)
Q Consensus 227 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g 294 (574)
+....++.... .. .....-|..++..+.+.+.++.+.++-+..++.--.-|. ..|+.+.++.+..|
T Consensus 881 ~~~~~ll~~~e-~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 REFQEIAEKYH-HQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHTT-TC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccCccc-cc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01111111110 00 012236788888899999999998888888764222233 25666777766654
No 299
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.99 E-value=1.4e+02 Score=24.05 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043999 473 EASKLFNSMWETKLEP-NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVPNI 525 (574)
Q Consensus 473 ~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 525 (574)
++.++|..|...++-- -...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3556677666665433 3445666666666677777777777777776655543
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.66 E-value=97 Score=25.36 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=5.9
Q ss_pred HHhcCCHHHHHHHH
Q 043999 220 CCKNGDIERAKMLF 233 (574)
Q Consensus 220 ~~~~g~~~~A~~~~ 233 (574)
.+..|+.+-+..++
T Consensus 79 A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 79 AGAQGRTEILAYML 92 (201)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 33445544433333
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.50 E-value=1.4e+02 Score=24.00 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 043999 437 EKAFEMYSLMQKSGFSPD-VYTYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDV 491 (574)
Q Consensus 437 ~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 491 (574)
++...+|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 346678888888776544 3456677777888889999999998888877777533
No 302
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.28 E-value=3.2e+02 Score=27.95 Aligned_cols=80 Identities=6% Similarity=0.099 Sum_probs=37.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---
Q 043999 286 LIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCD--- 362 (574)
Q Consensus 286 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--- 362 (574)
....+.-.|+++.|++.+-.. ...+.+.+...+..| |-+... +.+......-....+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKID----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCC----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 445555678888888876643 222444444443332 222211 111111000012335667777764
Q ss_pred cCCHHHHHHHHHHH
Q 043999 363 AGETDKAFRLFNQL 376 (574)
Q Consensus 363 ~g~~~~A~~~~~~~ 376 (574)
..++.+|.++|-.+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 46777777777665
No 303
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.99 E-value=1.6e+02 Score=24.53 Aligned_cols=53 Identities=9% Similarity=0.166 Sum_probs=27.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 043999 398 AGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDD-----MEKAFEMYSLMQKSGF 451 (574)
Q Consensus 398 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~ 451 (574)
-.+++.|+..+-+|++.| .|..+.-..++-+.--.|. +..|...++.....|.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 356666666666666666 5554444444444433332 2334444454555553
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=39.67 E-value=83 Score=25.79 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=5.2
Q ss_pred hcCCHHHHHHHH
Q 043999 222 KNGDIERAKMLF 233 (574)
Q Consensus 222 ~~g~~~~A~~~~ 233 (574)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444433
No 305
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.21 E-value=2.2e+02 Score=25.86 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 471 MKEASKLFNSMWETKLEPND--VVYNMMIFGYCKEGNSYRALRLLGEMNEKG 520 (574)
Q Consensus 471 ~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 520 (574)
.....++-.-+..-.+.|.. .+...-+....+.+++..|..+.+++++.+
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34444444444444555432 234555666677777777777777777753
No 306
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=38.97 E-value=1.1e+02 Score=25.80 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=5.0
Q ss_pred HHHHHhcCChH
Q 043999 113 IDAHLKSRLSD 123 (574)
Q Consensus 113 i~~~~~~g~~~ 123 (574)
+...++.|+.+
T Consensus 15 L~~A~~~g~~~ 25 (237)
T 3b7b_A 15 LHAAAEAGHVD 25 (237)
T ss_dssp HHHHHHHTCHH
T ss_pred HHHHHHcCcHH
Confidence 33344555544
No 307
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=36.79 E-value=1.2e+02 Score=25.74 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=13.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043999 357 IDGFCDAGETDKAFRLFNQLKS 378 (574)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~~~~ 378 (574)
+......|+...+.++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444556666677776666654
No 308
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.43 E-value=2.2e+02 Score=25.79 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 213 YTSLIDGCCKNGDIERAKMLFRKIG 237 (574)
Q Consensus 213 ~~~li~~~~~~g~~~~A~~~~~~~~ 237 (574)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567888888889988888888764
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.18 E-value=89 Score=24.85 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 043999 457 TYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGN--SYRALRLLGEMNEKGLVPN 524 (574)
Q Consensus 457 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 524 (574)
....++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888888999999999999988421111 22334444445544322 3457777777777665433
No 310
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.81 E-value=2e+02 Score=23.97 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=11.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhH
Q 043999 399 GNSKMASDLVREMEERGITPSEVT 422 (574)
Q Consensus 399 g~~~~A~~~~~~m~~~~~~p~~~~ 422 (574)
.+++.|+..+-+|++.|-.|..+.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~Ia 44 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVA 44 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 344444444455544444433333
No 311
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=34.25 E-value=1.9e+02 Score=24.19 Aligned_cols=23 Identities=0% Similarity=-0.048 Sum_probs=11.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC
Q 043999 289 EYCNEGKVSEGFKLFDEMRHREV 311 (574)
Q Consensus 289 ~~~~~g~~~~A~~~~~~m~~~~~ 311 (574)
..+..|+.+-+..+++.+.+.|.
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCC
Confidence 33445555555555555555443
No 312
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=34.16 E-value=3.9e+02 Score=27.10 Aligned_cols=338 Identities=9% Similarity=-0.013 Sum_probs=162.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 043999 145 NSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNG 224 (574)
Q Consensus 145 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 224 (574)
+.-+..+.+.+++...+.++.. .+.+...-.....+....|+-.+|....+.+-..|. .....+..++..+.+.|
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCC
Confidence 3345566677777766664443 255676677777778888887777777777665553 34556777888887777
Q ss_pred CHHHHH--HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCCHhh---HHHHHHHH
Q 043999 225 DIERAK--MLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNG---------VSPSLYT---YNCLIHEY 290 (574)
Q Consensus 225 ~~~~A~--~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g---------~~p~~~~---~~~li~~~ 290 (574)
.+.... .=++.+...| +...-..++... . .......+.+..+.+.. ..++... +...+.-+
T Consensus 151 ~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rl 225 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASV 225 (618)
T ss_dssp CSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHH
Confidence 654432 2223333332 111111111111 0 01111111111111110 0112111 11112222
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 043999 291 CNEGKVSEGFKLFDEMRHREVACNVVTYNTL----ICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLIDGFCDAGET 366 (574)
Q Consensus 291 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 366 (574)
.+ .+.+.|...+....+...- +......+ ...+...+...++...+...... ..+.....-.+....+.|++
T Consensus 226 ar-~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 226 AR-QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HH-HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCH
T ss_pred Hh-cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCH
Confidence 32 3667777777776543322 32222222 22223344244555555554443 23333333344444566888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043999 367 DKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDDMEKAFEMYSLM 446 (574)
Q Consensus 367 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 446 (574)
+.|...|+.|..... .......-+..++...|+.++|..+|.++.+. .+ -|..+. ..+.|.....
T Consensus 302 ~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~~~~~------- 366 (618)
T 1qsa_A 302 RGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEYEL------- 366 (618)
T ss_dssp HHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCCCC-------
T ss_pred HHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCCCCCC-------
Confidence 888888877654311 12332334455666778888888888777642 11 233222 1222221000
Q ss_pred HHCCCCCC---HH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043999 447 QKSGFSPD---VY---TYGVLIHGLCMKGNMKEASKLFNSMWETKLEPNDVVYNMMIFGYCKEGNSYRALRLLG 514 (574)
Q Consensus 447 ~~~~~~~~---~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 514 (574)
......+. .. .--.-+..+...|....|...|..+.+. . +......+.......|..+.++....
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 00000010 00 0112345577889999999888887753 2 33333344444556777777665544
No 313
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=33.83 E-value=84 Score=27.17 Aligned_cols=57 Identities=11% Similarity=-0.085 Sum_probs=31.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH------HhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 043999 182 IKGCCEAGDLNKAFEVLNQLEEMGFSPNV------VIYTSLIDGCCKN---GDIERAKMLFRKIGE 238 (574)
Q Consensus 182 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 238 (574)
+...++.|+.+....+++.+.+.|..++. ..-.+.+...+.. |+.+-+..+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence 33445667777777777766666654443 1112233444444 666666666655433
No 314
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=33.71 E-value=28 Score=22.40 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcC
Q 043999 122 SDQALFYFHQMLDSGVRPRSNTFNSLLIFV-IKSC 155 (574)
Q Consensus 122 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~-~~~g 155 (574)
.++|...|.+|++..-.+...||...+..+ ++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 468888999988654445667888888777 5443
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.63 E-value=1.5e+02 Score=25.27 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043999 473 EASKLFNSMWETKLEP-NDVVYNMMIFGYCKEGNSYRALRLLGEMNEKGLVP 523 (574)
Q Consensus 473 ~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 523 (574)
++.++|..|...|+.- -...|......+-..|++++|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444555554443322 23334444444555555555555555555444343
No 316
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.62 E-value=32 Score=30.07 Aligned_cols=28 Identities=11% Similarity=-0.063 Sum_probs=18.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 043999 113 IDAHLKSRLSDQALFYFHQMLDSGVRPR 140 (574)
Q Consensus 113 i~~~~~~g~~~~A~~~~~~~~~~g~~p~ 140 (574)
+...++.|+.+....+++.+.+.|..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3444577888887777777776665544
No 317
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.32 E-value=2.3e+02 Score=23.65 Aligned_cols=22 Identities=9% Similarity=-0.121 Sum_probs=10.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 043999 324 GLCKEMRVQEAERLLDQMKMAG 345 (574)
Q Consensus 324 ~~~~~~~~~~A~~~~~~m~~~g 345 (574)
..+..|+.+-+..+++.+.+.|
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcC
Confidence 3344555555545555555544
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.99 E-value=3.1e+02 Score=25.11 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 248 YTVLICGLFKNGLQKDGFEFYEKMQ 272 (574)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~~~ 272 (574)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556666666666666666666653
No 319
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.92 E-value=3.7e+02 Score=25.87 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C---CChhhHHHHHHHHHh
Q 043999 295 KVSEGFKLFDEMRHR--------EVACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGI-S---PNVITYNKLIDGFCD 362 (574)
Q Consensus 295 ~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~---~~~~~~~~li~~~~~ 362 (574)
..++...+++..... ++..+......++.. -.|+..++..+++.+..... . ....+...+-....+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 356666677666543 233455555555554 46888888888887765321 0 012222222222111
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC----
Q 043999 363 AGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAF---SKAGNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDD---- 435 (574)
Q Consensus 363 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---- 435 (574)
... ....+......++.++ .+..+.+.|+..+.+|.+.|..|....-..++.+.-.-|.
T Consensus 244 ~~~--------------~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 244 RSA--------------RFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp CCC--------------C---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred hhh--------------ccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 100 0001111222334443 3457889999999999998887766665555555544443
Q ss_pred -HHHHHHHHHHHHHCC
Q 043999 436 -MEKAFEMYSLMQKSG 450 (574)
Q Consensus 436 -~~~A~~~~~~~~~~~ 450 (574)
..-|...++.....|
T Consensus 310 a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 310 AMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 334555555555555
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.66 E-value=1e+02 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQM 132 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~ 132 (574)
.+.++.-|...|+.++|.+.++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 455666666666666666666665
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.09 E-value=5e+02 Score=27.97 Aligned_cols=131 Identities=8% Similarity=-0.023 Sum_probs=76.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCCh
Q 043999 112 IIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDL 191 (574)
Q Consensus 112 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 191 (574)
++..+...|.++-|.++... .+.++..--.+..++...|++++|...|+++-.....+..... ..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~----------~~ 880 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA----------VL 880 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG----------GG
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc----------ch
Confidence 66777778888766554322 2334444344667889999999999999997755221110000 00
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcC
Q 043999 192 NKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQ----HTYTVLICGLFKNG 259 (574)
Q Consensus 192 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 259 (574)
+....++..... ......-|..++..+-+.+.++.+.++-+...+.--.-|. ..|..+.++.+..|
T Consensus 881 ~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 REFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111122221110 1112347888888999999999988888877654222232 35666777666554
No 322
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.03 E-value=1.9e+02 Score=22.67 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=28.5
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043999 201 LEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNG 259 (574)
Q Consensus 201 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 259 (574)
+.+.|++++ .--..++..+...+..-.|.++++.+.+.++..+..|..--+..+...|
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555433 2333444555555555666666666665554444444444444444444
No 323
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.94 E-value=2.5e+02 Score=23.64 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCC
Q 043999 399 GNSKMASDLVREMEERGITPSEVTYTILIDSFVRSDD-----MEKAFEMYSLMQKSG 450 (574)
Q Consensus 399 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~ 450 (574)
.+++.|+..+-+|++.|-.|..+.-..++-+.---|. +..|...++.....|
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 105 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVG 105 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 4555555555555555554444444444443333222 233444444444445
No 324
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.70 E-value=1.3e+02 Score=25.67 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043999 507 YRALRLLGEMNEKGLVPN-IASYSSTIGVLCQDGKWPEAEVLLNQMLKLGLKPSV 560 (574)
Q Consensus 507 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 560 (574)
+.+.++|..|..+|+--. ...|......+...|++.+|..+|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 467889999999877544 467788888999999999999999999988777744
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.66 E-value=2e+02 Score=22.41 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=30.3
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043999 201 LEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNG 259 (574)
Q Consensus 201 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 259 (574)
+.+.|++++. .-..++..+...+..-.|.++++.+.+.++..+..|..--+..+...|
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4455655443 233444455455555666667766666554445555444444444444
No 326
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=28.04 E-value=2.8e+02 Score=24.98 Aligned_cols=12 Identities=17% Similarity=-0.069 Sum_probs=5.9
Q ss_pred HHHHHhccCChH
Q 043999 15 NLISRMAKLPPL 26 (574)
Q Consensus 15 ~~~~~~~~~~~~ 26 (574)
.|+....+.+.+
T Consensus 28 ~L~~Av~~g~~~ 39 (337)
T 4g8k_A 28 LLIKAVQNEDVD 39 (337)
T ss_dssp HHHHHHHTTCHH
T ss_pred HHHHHHHcCCHH
Confidence 455555455443
No 327
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.00 E-value=1.4e+02 Score=24.96 Aligned_cols=13 Identities=15% Similarity=-0.225 Sum_probs=5.7
Q ss_pred hcCChhHHHHHHH
Q 043999 153 KSCSFDKGWLFFS 165 (574)
Q Consensus 153 ~~g~~~~A~~~~~ 165 (574)
+.|+.+....+++
T Consensus 15 ~~g~~~~v~~ll~ 27 (231)
T 3aji_A 15 YSGKLDELKERIL 27 (231)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 4444444444443
No 328
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.76 E-value=2e+02 Score=21.89 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 043999 284 NCLIHEYCNEGKVSEGFKLFDEM 306 (574)
Q Consensus 284 ~~li~~~~~~g~~~~A~~~~~~m 306 (574)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34555555566666666666555
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.67 E-value=3.7e+02 Score=26.01 Aligned_cols=65 Identities=11% Similarity=0.172 Sum_probs=30.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043999 210 VVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNGLQKDGFEFYEKMQLNG 275 (574)
Q Consensus 210 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 275 (574)
...|..-.+.+...|++++|-++--.-.+ |+-.+..|.+.+-..-...|...--+.+|..+.+.|
T Consensus 361 d~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 361 EELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 33444455566666777666665544332 223344444333332223344444444555554443
No 330
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=27.64 E-value=1.6e+02 Score=23.00 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.3
Q ss_pred hcCCHH
Q 043999 222 KNGDIE 227 (574)
Q Consensus 222 ~~g~~~ 227 (574)
..|+.+
T Consensus 84 ~~~~~~ 89 (165)
T 3twr_A 84 SYGHYE 89 (165)
T ss_dssp HTTCHH
T ss_pred HcCcHH
Confidence 334433
No 331
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.64 E-value=3.7e+02 Score=24.90 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQML 133 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 133 (574)
....++|.-|...|+.++|...++++.
T Consensus 55 k~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 55 KTLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 356677888888888888888877764
No 332
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.07 E-value=64 Score=20.20 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=17.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHH
Q 043999 513 LGEMNEKGLVPNIASYSSTIGVLCQDGK--WPEAEVLLNQM 551 (574)
Q Consensus 513 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m 551 (574)
++.+++.|+.++ ....++.+.|. ++.|.+++.+|
T Consensus 13 lq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 13 LQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 444445454432 22234444555 66666666665
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.34 E-value=2e+02 Score=22.53 Aligned_cols=43 Identities=7% Similarity=0.136 Sum_probs=19.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043999 358 DGFCDAGETDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAGN 400 (574)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 400 (574)
..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 34 ~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 34 SVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3333333444455555555444444444444444444444443
No 334
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=24.00 E-value=1e+02 Score=23.94 Aligned_cols=152 Identities=14% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043999 179 GILIKGCCEAGDLNKAFEVLNQLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKN 258 (574)
Q Consensus 179 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 258 (574)
...+...++.|+.+....+++. ....+......-.+.+.. +..|+.+-+..+++. ...+......-.+.+...+..
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHT
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043999 259 GLQKDGFEFYEKMQLNGVSPSLYTY--NCLIHEYCNEGKVSEGFKLFDEMRHREVACNVVTYNTLICGLCKEMRVQEAER 336 (574)
Q Consensus 259 g~~~~a~~~~~~~~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 336 (574)
|+.+ +++.+.+.|..++.... .+.+...+..|+.+-+.-+++. ..+......-.+.+...++.|+.+-+..
T Consensus 79 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~~ 151 (156)
T 1bd8_A 79 GFLD----TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDI 151 (156)
T ss_dssp TCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred CcHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHHH
Q ss_pred HHHHH
Q 043999 337 LLDQM 341 (574)
Q Consensus 337 ~~~~m 341 (574)
+++.+
T Consensus 152 Ll~~~ 156 (156)
T 1bd8_A 152 LQGHM 156 (156)
T ss_dssp HHTTC
T ss_pred HHhhC
No 335
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.97 E-value=3.7e+02 Score=24.50 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=7.0
Q ss_pred HHhcCCHHHHHHHHHH
Q 043999 220 CCKNGDIERAKMLFRK 235 (574)
Q Consensus 220 ~~~~g~~~~A~~~~~~ 235 (574)
.+..|+.+-+..+++.
T Consensus 91 A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 91 AVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHh
Confidence 3344444444444443
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.78 E-value=1.9e+02 Score=22.23 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=27.5
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043999 201 LEEMGFSPNVVIYTSLIDGCCKNG-DIERAKMLFRKIGELGLVATQHTYTVLICGLFKNG 259 (574)
Q Consensus 201 m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 259 (574)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+.+.|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455544332 333444444444 45556666666665554444444444444444443
No 337
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.68 E-value=1.9e+02 Score=22.57 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043999 366 TDKAFRLFNQLKSNGQSPSVVTYNVLIRAFSKAG 399 (574)
Q Consensus 366 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 399 (574)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344444444444333333444333444444433
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.65 E-value=1.3e+02 Score=22.91 Aligned_cols=49 Identities=14% Similarity=-0.067 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043999 110 ESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFD 158 (574)
Q Consensus 110 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~ 158 (574)
..++..+...+.+-.|.++++.+.+.+...+..|.-..|..+...|-+.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 4566666677778899999999988876667777777788888777643
No 339
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.53 E-value=1.3e+02 Score=26.21 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=11.8
Q ss_pred HHhcCChhHHHHHHHHHHHCC
Q 043999 185 CCEAGDLNKAFEVLNQLEEMG 205 (574)
Q Consensus 185 ~~~~g~~~~A~~~~~~m~~~g 205 (574)
.++.|+.+....+++...+.+
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHhhcc
Confidence 345566666666666555444
No 340
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.49 E-value=4.2e+02 Score=24.09 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=12.7
Q ss_pred cCChHHHHHHHHHHH
Q 043999 60 SHSHAAAQTLILKII 74 (574)
Q Consensus 60 ~~~~~~a~~~~~~~~ 74 (574)
.|.|+.|.+++.+.+
T Consensus 41 AGsFetAm~lLnrQv 55 (325)
T 3mv2_A 41 AGAFDAAVQALSKQV 55 (325)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHh
Confidence 899999998887765
No 341
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.35 E-value=88 Score=27.04 Aligned_cols=28 Identities=0% Similarity=-0.135 Sum_probs=18.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 043999 113 IDAHLKSRLSDQALFYFHQMLDSGVRPR 140 (574)
Q Consensus 113 i~~~~~~g~~~~A~~~~~~~~~~g~~p~ 140 (574)
+...++.|+.+....+++.+++.|..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 4445677888877777777776665443
No 342
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.05 E-value=3.5e+02 Score=22.93 Aligned_cols=20 Identities=10% Similarity=-0.119 Sum_probs=10.5
Q ss_pred ChHHHHHHHHHHHhCCCCCC
Q 043999 121 LSDQALFYFHQMLDSGVRPR 140 (574)
Q Consensus 121 ~~~~A~~~~~~~~~~g~~p~ 140 (574)
++.+-+.+++.++..++.-.
T Consensus 34 dFrq~rdi~eall~~~l~~~ 53 (235)
T 3bu8_A 34 DFRQIRDIMQALLVRPLGKE 53 (235)
T ss_dssp HHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHhCccccc
Confidence 34455556666654554444
No 343
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.91 E-value=1.3e+02 Score=19.76 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043999 108 LYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKS 154 (574)
Q Consensus 108 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 154 (574)
.++.++..+....-.++++..+.++++.|. .+..+|-.-...+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 367788888888888999999999998884 4666666666665543
No 344
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.69 E-value=5.3e+02 Score=24.96 Aligned_cols=110 Identities=9% Similarity=0.023 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043999 120 RLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFDKGWLFFSENRCKVELDVYSFGILIKGCCEAGDLNKAFEVLN 199 (574)
Q Consensus 120 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 199 (574)
.+.+-|.++..+ .|.+--...|..-...+...|++++|.++-...+...-.+..|.+.+-..=...|+..--+.+|.
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 667766665443 44443445566667778899999999999988877655677776655554445566666777777
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 043999 200 QLEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLF 233 (574)
Q Consensus 200 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 233 (574)
.+.+.| +.+..----++..-..+|+.+-..+++
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHHH
Confidence 777665 234433333444444455544444433
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.27 E-value=1.2e+02 Score=23.57 Aligned_cols=50 Identities=12% Similarity=-0.032 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043999 109 YESIIDAHLKSRLSDQALFYFHQMLDSGVRPRSNTFNSLLIFVIKSCSFD 158 (574)
Q Consensus 109 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~ 158 (574)
-..++..+...+.+-.|.++++.+.+.+...+..|.-..|..+...|-+.
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 45566777677778889999999988876777777777788888877653
No 346
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=22.00 E-value=3.3e+02 Score=22.36 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=22.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHH
Q 043999 112 IIDAHLKSRLSDQALFYFHQMLDSGVRPRSNT--FNSLLIFVIKSCSFDKGWLFFS 165 (574)
Q Consensus 112 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~--~~~ll~~~~~~g~~~~A~~~~~ 165 (574)
.+...++.|+.+-+ +.+++.|..++... -.+.+...+..|+.+-...+++
T Consensus 28 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 28 ALHLAARYSRSDAA----KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34444567775543 34444554443211 1123334445566555554444
No 347
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.95 E-value=2.3e+02 Score=22.05 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=4.9
Q ss_pred HhcCCHHHHHHH
Q 043999 221 CKNGDIERAKML 232 (574)
Q Consensus 221 ~~~g~~~~A~~~ 232 (574)
++.|+.+....+
T Consensus 16 ~~~g~~~~v~~l 27 (165)
T 3twr_A 16 AKAGDVETVKKL 27 (165)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHhCCHHHHHHH
Confidence 334444444333
No 348
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=21.81 E-value=3e+02 Score=21.73 Aligned_cols=26 Identities=8% Similarity=0.326 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043999 213 YTSLIDGCCKNGDIERAKMLFRKIGE 238 (574)
Q Consensus 213 ~~~li~~~~~~g~~~~A~~~~~~~~~ 238 (574)
...-+..+++.|+.+.+...+..+..
T Consensus 96 ~c~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 96 SCVAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445556677777777766666654
No 349
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.50 E-value=1e+02 Score=19.80 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=8.1
Q ss_pred cCCHHHHHHHHHHHHhC
Q 043999 223 NGDIERAKMLFRKIGEL 239 (574)
Q Consensus 223 ~g~~~~A~~~~~~~~~~ 239 (574)
.|+++.|+..+-.|...
T Consensus 36 ~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEE 52 (59)
T ss_dssp TTCHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHHcCcCC
Confidence 44455555555444433
No 350
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.37 E-value=3.5e+02 Score=24.79 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043999 212 IYTSLIDGCCKNGDIERAKMLFRKIG 237 (574)
Q Consensus 212 ~~~~li~~~~~~g~~~~A~~~~~~~~ 237 (574)
....++.-|...|+.++|.+.++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35678888999999999999888874
No 351
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.02 E-value=1.9e+02 Score=22.54 Aligned_cols=57 Identities=9% Similarity=-0.001 Sum_probs=26.3
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043999 201 LEEMGFSPNVVIYTSLIDGCCKNGDIERAKMLFRKIGELGLVATQHTYTVLICGLFKNG 259 (574)
Q Consensus 201 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 259 (574)
+.+.|++++.. -..++..+...+ .-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34455554432 233333343444 4456666666655554444444444444444443
No 352
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.98 E-value=7.8e+02 Score=26.29 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=35.1
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043999 286 LIHEYCNEGK---VSEGFKLFDEMRHRE----VACNVVTYNTLICGLCKEMRVQEAERLLDQMKMAGISPNVITYNKLID 358 (574)
Q Consensus 286 li~~~~~~g~---~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 358 (574)
++...|+.|. .++|.+.|+.....+ ++||. -..+...-.+.|..++-..+++...... +..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHH
Confidence 4444555554 344555555544321 22222 2222222233444444444444444321 2222233444
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 043999 359 GFCDAGETDKAFRLFNQL 376 (574)
Q Consensus 359 ~~~~~g~~~~A~~~~~~~ 376 (574)
+++...+.....++++..
T Consensus 767 aL~~~~d~~~l~~~L~~~ 784 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYT 784 (909)
T ss_dssp HHTTCCCHHHHHHHHHHT
T ss_pred HhCCCCCHHHHHHHHHHH
Confidence 444444444444444443
No 353
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.76 E-value=4.4e+02 Score=25.41 Aligned_cols=64 Identities=8% Similarity=0.088 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--------HHHHH-HHHHHHhcCChhHHHHHHHHcccC
Q 043999 107 RLYESIIDAHLKSRLSDQALFYFHQMLDSGVRPRS--------NTFNS-LLIFVIKSCSFDKGWLFFSENRCK 170 (574)
Q Consensus 107 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--------~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~ 170 (574)
..-|.|.+.|.+.|++..+..+++.+...+..|+. .+|.. +...+.-.+++.+|.+.+.++...
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 56788899999999999999999988776553322 23333 334556778888887777665443
No 354
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.14 E-value=5.8e+02 Score=24.44 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 043999 329 MRVQEAERLLDQMKMAGISP 348 (574)
Q Consensus 329 ~~~~~A~~~~~~m~~~g~~~ 348 (574)
.+.+.|+.++.+|.+.|..|
T Consensus 269 sd~daAl~~la~ml~~Gedp 288 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGDP 288 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44444444444444444333
Done!