BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044000
(420 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZ00|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4
OS=Arabidopsis thaliana GN=MED4 PE=1 SV=1
Length = 426
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 272/413 (65%), Positives = 320/413 (77%), Gaps = 17/413 (4%)
Query: 1 MLQHQIVQSPARLGLTNPNSPSLQNPNP--NPSPTKFPTSATHHHLRSATP--------P 50
MLQHQIVQSPARLGLT P SPS+QNP P + PT +S + H P
Sbjct: 1 MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60
Query: 51 TAPITTGTTACTSSTLLSLLPPLPRAQALLLQMASLASKLFEVSPNRSLWISAFRGSLPT 110
A + + A +SS LLSLLPPLPRAQALL QMA L SKLF+VSPNR++W+SAFRGSLP+
Sbjct: 61 AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120
Query: 111 FLSSQAQSQPPPPIDSSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIK 170
FLSS + PPP + SPS+ KEI++ F SLQTQLFEAV ELQEILDLQDAKQK+AREIK
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180
Query: 171 AKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRVK-SEGGDGNDDDSGSCSTTVESRL 229
+KDS++LAFANK+K+AERVLD+LVDDYSDYR+PKR K E + ND++S S STTV S+L
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240
Query: 230 NLSDILSYAHRISYTTFAPPEFGAGQGPLRGALPPAPQEEQMRASQLYTFADLDVGLPKV 289
L DIL+YAH+ISYTTFAPPEFGAGQ PLRGALPPAPQ+EQMRASQLYTFADLD+GLPK
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300
Query: 290 VETKEKTIEAIIEPPPLQPVDANPLKDLAGLLPPNITVPSGWKPGMPVELPKDFPLVPPP 349
VE EK +EA+IEPPP P +A + + LLPPNI VPSGWKPGMPVEL +PPP
Sbjct: 301 VENMEKKVEALIEPPP--PPEAMDISAIHNLLPPNIAVPSGWKPGMPVEL-PRDLPLPPP 357
Query: 350 GWKPGDAVPLPPLDALPMPRIEE-QQLRPVPPQGLHKPPEPIQVRHVELDILD 401
GWKPGD V LPPL+++ PR E+ Q +R P QGLH+PP+ IQVR V+LDIL+
Sbjct: 358 GWKPGDPVVLPPLESIAAPRAEDHQHMR--PSQGLHRPPDVIQVRAVQLDILE 408
>sp|Q54D00|MED4_DICDI Putative mediator of RNA polymerase II transcription subunit 4
OS=Dictyostelium discoideum GN=med4 PE=3 SV=1
Length = 343
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 24/169 (14%)
Query: 125 DSSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIK 184
+++P+ + +++ + + +L++ +Q +I +EI+ KD I A +K
Sbjct: 62 NATPNMVLQLMNHLIDVDKIYQNTLKKLEKHQKIQKEITEIQKEIEEKDKLISTLALNLK 121
Query: 185 EAERVLDILVDDYSDYRRPKRVKSEGGDGND-------------DDSGSCSTTVESRLNL 231
+ E L+ + V G+ +D DD+ S V ++
Sbjct: 122 DIESFLE-------NELSQDNVNINNGNASDGIVNEVLIDLKQPDDAASMDNIVNREVSP 174
Query: 232 SDILSYAHRISYTTFAPPEFGAG-QGPLRGAL-PPAPQEEQMRASQLYT 278
D++SYAH+IS TT AP FG PL PPAPQ+E MR+S L+T
Sbjct: 175 EDLISYAHKISGTTSAP--FGYQPNAPLASLFKPPAPQDEMMRSSVLFT 221
>sp|B3CLB3|LON_WOLPP Lon protease OS=Wolbachia pipientis subsp. Culex pipiens (strain
wPip) GN=lon PE=3 SV=1
Length = 818
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 32 PTKFPTSATHHHL-RSATPPTAPITTGTTACTSSTLLSLLPPLPRAQALLLQ-MASLASK 89
P KF + H H+ A P P + G+ CTS ++SL+ +P +++ + +L +
Sbjct: 669 PEKFQNNDIHLHVPEGAVPKDGP-SAGSAVCTS--IVSLMTNIPVNKSVAMTGEVTLRGR 725
Query: 90 LFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKEIIACFTSLQTQLFEAV 149
+ + R ++A RGS+ T + S+ + P+ IKE I + V
Sbjct: 726 VLAIGGLREKLLAALRGSIKTVI---IPSENEKDMQEIPANIKEEINVIFAENIDEVIKV 782
Query: 150 AELQEILDLQDAKQ-KIAREIKAKDS 174
A + I + D + ++ I+ KD+
Sbjct: 783 ALMHPITSIDDNNEISVSTSIENKDN 808
>sp|Q561X3|MED4_DANRE Mediator of RNA polymerase II transcription subunit 4 OS=Danio
rerio GN=med4 PE=2 SV=1
Length = 254
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%)
Query: 114 SQAQSQPPPPIDSSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKD 173
S++Q PPP D+ I+ + E + E + Q + +E++ +D
Sbjct: 35 SRSQKLPPPGEDTL------ILELLIQRDKEFQELMQTALEQGRVHQEMQSLEKEVEKRD 88
Query: 174 SAILAFANKIKEAERVLDILVDDYSDYRRPKRVKSEGGDGNDDDSGSCSTTVESRLNLSD 233
S I ++KEAE +L V Y+ +++KS + GS S+ +
Sbjct: 89 SDIQQLQKQLKEAEHILATAV-----YQAKEKLKS----IDKARKGSISS--------KE 131
Query: 234 ILSYAHRISYTT--FAPPEFGAGQGPLRGALPPAPQEEQMRASQLYTFADL 282
I+ YAHRIS + AP + G P R P P + +MR+ L +++
Sbjct: 132 IIKYAHRISASNAVCAPLNWVPGD-PRR----PYPTDLEMRSGMLGNMSNM 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,792,846
Number of Sequences: 539616
Number of extensions: 8395045
Number of successful extensions: 34631
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 566
Number of HSP's that attempted gapping in prelim test: 30400
Number of HSP's gapped (non-prelim): 3578
length of query: 420
length of database: 191,569,459
effective HSP length: 120
effective length of query: 300
effective length of database: 126,815,539
effective search space: 38044661700
effective search space used: 38044661700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)