Query 044000
Match_columns 420
No_of_seqs 65 out of 67
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 10:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4552 Vitamin-D-receptor int 100.0 7.3E-32 1.6E-36 254.0 10.6 125 132-278 46-172 (272)
2 PF10018 Med4: Vitamin-D-recep 100.0 4.2E-29 9E-34 225.3 14.3 137 133-287 2-148 (188)
3 PF05983 Med7: MED7 protein; 94.7 0.59 1.3E-05 42.8 11.9 92 73-191 71-162 (162)
4 PRK11637 AmiB activator; Provi 88.9 2.9 6.2E-05 42.6 9.7 38 159-196 95-132 (428)
5 PF14817 HAUS5: HAUS augmin-li 85.6 1.8 3.9E-05 47.5 6.5 53 150-202 76-128 (632)
6 PF10417 1-cysPrx_C: C-termina 84.2 0.41 8.9E-06 34.9 0.6 18 347-364 12-29 (40)
7 PF05600 DUF773: Protein of un 83.5 5.8 0.00013 42.4 8.9 124 66-194 343-494 (507)
8 PF04859 DUF641: Plant protein 83.2 3.7 8.1E-05 37.1 6.4 46 147-192 80-126 (131)
9 PF08317 Spc7: Spc7 kinetochor 83.1 7 0.00015 38.9 8.8 64 131-194 175-243 (325)
10 PRK11637 AmiB activator; Provi 81.4 13 0.00029 37.9 10.3 37 159-195 88-124 (428)
11 PF05384 DegS: Sensor protein 80.7 21 0.00045 33.2 10.4 72 131-202 4-76 (159)
12 PF12329 TMF_DNA_bd: TATA elem 80.2 24 0.00052 28.7 9.4 62 134-195 3-68 (74)
13 PF06005 DUF904: Protein of un 77.5 31 0.00068 28.2 9.4 58 134-194 2-66 (72)
14 KOG0804 Cytoplasmic Zn-finger 76.2 13 0.00027 40.2 8.5 56 137-192 383-453 (493)
15 PF07889 DUF1664: Protein of u 75.9 24 0.00051 31.9 9.0 67 130-198 40-106 (126)
16 PF00261 Tropomyosin: Tropomyo 75.9 36 0.00078 32.4 10.8 41 159-199 196-236 (237)
17 PRK14160 heat shock protein Gr 75.2 5 0.00011 38.8 4.9 42 161-202 55-96 (211)
18 TIGR02894 DNA_bind_RsfA transc 74.9 25 0.00054 33.2 9.2 17 127-143 78-94 (161)
19 PF08317 Spc7: Spc7 kinetochor 74.4 29 0.00062 34.6 10.1 55 138-192 211-269 (325)
20 cd07627 BAR_Vps5p The Bin/Amph 73.6 37 0.0008 31.8 10.1 69 130-198 92-167 (216)
21 PF05546 She9_MDM33: She9 / Md 73.4 23 0.00049 34.6 8.8 64 132-196 5-68 (207)
22 PHA01750 hypothetical protein 73.4 27 0.00058 29.3 8.0 59 128-191 15-73 (75)
23 PF08549 SWI-SNF_Ssr4: Fungal 73.1 20 0.00044 40.1 9.4 81 159-240 377-459 (669)
24 PF09766 FimP: Fms-interacting 72.6 23 0.0005 36.1 9.1 58 137-194 92-149 (355)
25 PF11932 DUF3450: Protein of u 72.0 43 0.00093 32.0 10.3 67 128-194 23-90 (251)
26 PF13815 Dzip-like_N: Iguana/D 72.0 19 0.00042 31.0 7.3 44 140-183 73-117 (118)
27 PF13863 DUF4200: Domain of un 71.9 39 0.00084 28.5 9.0 55 145-199 66-123 (126)
28 COG4942 Membrane-bound metallo 71.6 21 0.00045 38.0 8.7 58 136-193 38-99 (420)
29 PRK13182 racA polar chromosome 70.9 25 0.00053 33.0 8.2 63 126-188 78-146 (175)
30 PRK10803 tol-pal system protei 70.7 37 0.00081 33.1 9.7 41 155-195 63-103 (263)
31 PRK10884 SH3 domain-containing 69.6 48 0.001 31.8 10.0 64 129-192 93-157 (206)
32 PF10186 Atg14: UV radiation r 69.5 46 0.001 31.1 9.8 33 159-191 76-108 (302)
33 cd07596 BAR_SNX The Bin/Amphip 69.4 44 0.00095 29.5 9.1 24 174-197 145-168 (218)
34 PF01923 Cob_adeno_trans: Coba 69.3 49 0.0011 30.0 9.5 45 131-175 48-98 (163)
35 TIGR02338 gimC_beta prefoldin, 69.1 57 0.0012 27.7 9.4 36 159-194 73-108 (110)
36 PF02403 Seryl_tRNA_N: Seryl-t 69.1 66 0.0014 26.7 10.1 66 128-194 25-101 (108)
37 PF04156 IncA: IncA protein; 68.9 54 0.0012 29.5 9.7 38 159-196 129-166 (191)
38 PRK04654 sec-independent trans 67.9 55 0.0012 32.3 10.1 40 153-192 47-86 (214)
39 PRK14148 heat shock protein Gr 67.8 8 0.00017 36.9 4.4 36 167-202 40-75 (195)
40 PF11853 DUF3373: Protein of u 67.1 8.2 0.00018 41.6 4.8 33 156-188 27-59 (489)
41 TIGR03185 DNA_S_dndD DNA sulfu 67.0 46 0.001 36.0 10.4 11 231-241 478-488 (650)
42 PF10046 BLOC1_2: Biogenesis o 66.9 46 0.001 28.1 8.3 26 159-184 72-97 (99)
43 smart00787 Spc7 Spc7 kinetocho 66.8 40 0.00087 34.1 9.3 61 132-192 171-236 (312)
44 PF00846 Hanta_nucleocap: Hant 66.4 50 0.0011 35.3 10.1 68 129-196 2-71 (428)
45 PRK10884 SH3 domain-containing 66.4 36 0.00079 32.6 8.5 34 160-193 118-151 (206)
46 PRK11519 tyrosine kinase; Prov 66.3 29 0.00063 38.1 8.8 97 74-190 304-400 (719)
47 PF12777 MT: Microtubule-bindi 65.9 35 0.00075 34.3 8.6 44 159-202 255-298 (344)
48 PF12302 DUF3629: Protein of u 65.1 20 0.00043 35.3 6.5 56 129-192 81-136 (253)
49 PF04977 DivIC: Septum formati 64.6 39 0.00083 26.0 6.9 21 157-177 28-48 (80)
50 PF06637 PV-1: PV-1 protein (P 64.4 1.5E+02 0.0033 31.9 13.1 37 158-194 354-390 (442)
51 PRK09841 cryptic autophosphory 64.4 38 0.00082 37.3 9.3 98 74-191 304-401 (726)
52 KOG3850 Predicted membrane pro 64.0 88 0.0019 33.6 11.3 75 125-201 32-123 (455)
53 PF09325 Vps5: Vps5 C terminal 63.8 71 0.0015 29.2 9.6 66 131-196 113-185 (236)
54 PF05600 DUF773: Protein of un 63.8 31 0.00068 37.0 8.3 70 128-197 94-168 (507)
55 cd07596 BAR_SNX The Bin/Amphip 63.8 98 0.0021 27.4 10.2 34 161-194 146-179 (218)
56 PF08700 Vps51: Vps51/Vps67; 63.6 72 0.0016 25.2 10.0 63 130-192 20-83 (87)
57 PF10211 Ax_dynein_light: Axon 63.5 65 0.0014 30.2 9.4 39 156-194 116-154 (189)
58 PF10805 DUF2730: Protein of u 63.4 91 0.002 26.8 9.6 37 159-195 64-100 (106)
59 PF11559 ADIP: Afadin- and alp 63.1 1E+02 0.0022 27.2 10.1 32 163-194 83-114 (151)
60 COG4550 Predicted membrane pro 63.0 68 0.0015 29.2 9.0 63 131-194 40-104 (120)
61 PRK14011 prefoldin subunit alp 62.9 44 0.00096 30.5 8.0 44 129-172 84-128 (144)
62 COG1579 Zn-ribbon protein, pos 62.5 77 0.0017 31.4 10.1 47 150-196 107-153 (239)
63 KOG2264 Exostosin EXT1L [Signa 62.5 52 0.0011 37.1 9.7 104 86-195 36-149 (907)
64 cd04776 HTH_GnyR Helix-Turn-He 62.4 35 0.00077 29.4 7.0 29 159-187 86-114 (118)
65 cd00176 SPEC Spectrin repeats, 61.9 87 0.0019 26.6 9.2 75 127-201 31-113 (213)
66 PRK09343 prefoldin subunit bet 61.8 97 0.0021 27.1 9.6 39 159-197 77-115 (121)
67 PF12998 ING: Inhibitor of gro 61.7 85 0.0018 25.4 9.0 23 75-97 30-52 (105)
68 PF10186 Atg14: UV radiation r 61.5 90 0.0019 29.2 10.0 34 159-192 69-102 (302)
69 PF10018 Med4: Vitamin-D-recep 61.4 52 0.0011 30.5 8.3 51 143-193 5-55 (188)
70 smart00787 Spc7 Spc7 kinetocho 61.4 53 0.0012 33.3 9.0 32 159-190 231-262 (312)
71 PF14282 FlxA: FlxA-like prote 61.2 90 0.002 26.8 9.2 58 132-189 18-80 (106)
72 TIGR00634 recN DNA repair prot 60.7 36 0.00078 36.2 8.1 64 130-193 267-341 (563)
73 KOG2685 Cystoskeletal protein 60.5 60 0.0013 34.8 9.5 40 163-202 347-386 (421)
74 COG1340 Uncharacterized archae 60.3 79 0.0017 32.4 10.0 75 128-202 130-207 (294)
75 PF11932 DUF3450: Protein of u 60.2 94 0.002 29.7 10.1 6 236-241 163-168 (251)
76 PF05278 PEARLI-4: Arabidopsis 60.1 66 0.0014 32.6 9.3 71 127-197 147-230 (269)
77 PF01920 Prefoldin_2: Prefoldi 60.0 37 0.00079 27.4 6.3 38 156-193 1-38 (106)
78 COG1579 Zn-ribbon protein, pos 59.5 46 0.00099 33.0 8.0 55 133-190 28-82 (239)
79 PF13747 DUF4164: Domain of un 59.1 88 0.0019 26.4 8.6 48 134-188 13-60 (89)
80 COG3883 Uncharacterized protei 59.1 59 0.0013 32.8 8.8 29 127-155 36-64 (265)
81 COG3883 Uncharacterized protei 59.0 89 0.0019 31.6 10.0 82 159-243 58-141 (265)
82 PF01920 Prefoldin_2: Prefoldi 58.7 74 0.0016 25.6 7.9 34 159-192 68-101 (106)
83 PF10779 XhlA: Haemolysin XhlA 58.6 65 0.0014 25.7 7.4 33 159-191 19-51 (71)
84 PF09325 Vps5: Vps5 C terminal 58.5 1.2E+02 0.0026 27.7 10.1 70 129-198 121-201 (236)
85 PF06785 UPF0242: Uncharacteri 58.0 70 0.0015 33.8 9.3 56 142-197 129-185 (401)
86 PRK14145 heat shock protein Gr 57.8 10 0.00023 36.3 3.2 10 348-357 177-186 (196)
87 TIGR03007 pepcterm_ChnLen poly 57.7 57 0.0012 33.5 8.7 32 157-188 352-383 (498)
88 PF14193 DUF4315: Domain of un 57.3 27 0.00059 29.5 5.2 32 161-192 2-33 (83)
89 PRK09039 hypothetical protein; 57.0 51 0.0011 33.5 8.1 28 167-194 158-185 (343)
90 PF13864 Enkurin: Calmodulin-b 56.7 51 0.0011 27.6 6.8 56 126-181 34-95 (98)
91 cd07664 BAR_SNX2 The Bin/Amphi 56.3 1.2E+02 0.0025 29.6 10.1 70 129-198 109-183 (234)
92 KOG0570 Transcriptional coacti 56.0 56 0.0012 32.3 7.8 64 126-193 103-166 (223)
93 COG2433 Uncharacterized conser 56.0 64 0.0014 36.2 9.1 34 165-198 472-505 (652)
94 PF04156 IncA: IncA protein; 55.9 1.2E+02 0.0027 27.2 9.6 25 163-187 126-150 (191)
95 PF05667 DUF812: Protein of un 55.2 45 0.00097 36.7 7.8 27 157-183 451-477 (594)
96 PF03148 Tektin: Tektin family 55.0 95 0.0021 31.9 9.7 43 150-192 261-304 (384)
97 PF04576 Zein-binding: Zein-bi 54.5 72 0.0016 27.9 7.4 58 126-183 28-93 (94)
98 COG2433 Uncharacterized conser 54.4 87 0.0019 35.2 9.8 29 159-187 480-508 (652)
99 PF04102 SlyX: SlyX; InterPro 54.2 80 0.0017 25.2 7.2 22 162-183 20-41 (69)
100 PF11594 Med28: Mediator compl 53.8 1.4E+02 0.0031 26.6 9.3 62 133-194 12-76 (106)
101 PF08826 DMPK_coil: DMPK coile 53.8 64 0.0014 26.0 6.6 37 160-196 11-47 (61)
102 PF15035 Rootletin: Ciliary ro 53.6 1.5E+02 0.0032 28.0 10.0 74 127-200 58-135 (182)
103 PF05529 Bap31: B-cell recepto 53.2 83 0.0018 28.8 8.2 30 168-197 155-184 (192)
104 PF14257 DUF4349: Domain of un 53.0 40 0.00087 32.1 6.3 8 180-187 168-175 (262)
105 KOG0614 cGMP-dependent protein 52.7 44 0.00096 37.4 7.2 60 126-188 14-73 (732)
106 cd04769 HTH_MerR2 Helix-Turn-H 52.6 28 0.0006 29.6 4.7 25 159-183 85-109 (116)
107 PRK13729 conjugal transfer pil 52.5 56 0.0012 35.4 7.9 87 96-193 28-116 (475)
108 PRK05431 seryl-tRNA synthetase 52.3 64 0.0014 33.6 8.1 31 164-194 70-100 (425)
109 PF08614 ATG16: Autophagy prot 52.3 42 0.00091 31.0 6.2 40 159-198 115-154 (194)
110 PF10241 KxDL: Uncharacterized 52.0 1.4E+02 0.003 24.9 8.6 25 132-156 21-45 (88)
111 PF12718 Tropomyosin_1: Tropom 51.8 1.5E+02 0.0033 26.8 9.4 36 158-193 78-113 (143)
112 COG3679 Regulatory protein inv 51.8 66 0.0014 29.0 7.0 35 159-198 67-101 (118)
113 PRK14143 heat shock protein Gr 51.5 18 0.00039 35.5 3.8 13 347-359 202-214 (238)
114 PHA02562 46 endonuclease subun 51.5 1.3E+02 0.0029 31.1 10.2 11 105-115 284-294 (562)
115 COG4345 Uncharacterized protei 51.4 64 0.0014 31.1 7.2 39 157-195 129-167 (181)
116 TIGR01843 type_I_hlyD type I s 51.3 76 0.0017 31.0 8.1 30 159-188 150-179 (423)
117 PF12999 PRKCSH-like: Glucosid 51.3 1.1E+02 0.0024 29.2 8.8 83 103-187 80-173 (176)
118 TIGR00998 8a0101 efflux pump m 51.2 73 0.0016 30.6 7.8 38 164-201 98-135 (334)
119 PF10779 XhlA: Haemolysin XhlA 50.7 52 0.0011 26.2 5.7 38 157-194 3-40 (71)
120 KOG0933 Structural maintenance 50.3 63 0.0014 38.2 8.2 80 128-208 707-791 (1174)
121 PF05529 Bap31: B-cell recepto 50.2 1.1E+02 0.0024 28.0 8.4 27 159-185 160-186 (192)
122 PF06810 Phage_GP20: Phage min 50.2 74 0.0016 29.1 7.3 48 130-177 21-68 (155)
123 cd04776 HTH_GnyR Helix-Turn-He 50.0 1.2E+02 0.0026 26.2 8.2 27 162-188 82-108 (118)
124 PF07889 DUF1664: Protein of u 50.0 2E+02 0.0043 26.1 9.8 62 132-193 53-115 (126)
125 TIGR00414 serS seryl-tRNA synt 49.7 75 0.0016 33.1 8.1 33 162-194 71-103 (418)
126 PF14772 NYD-SP28: Sperm tail 49.0 1.6E+02 0.0034 24.7 9.3 35 159-193 61-95 (104)
127 PF05565 Sipho_Gp157: Siphovir 49.0 2.1E+02 0.0046 26.1 10.1 64 132-195 25-89 (162)
128 PRK13922 rod shape-determining 48.6 1.8E+02 0.004 27.9 10.0 57 137-194 53-109 (276)
129 PF04799 Fzo_mitofusin: fzo-li 48.3 1.1E+02 0.0024 29.1 8.3 62 133-197 102-163 (171)
130 PF04977 DivIC: Septum formati 48.3 90 0.0019 23.9 6.6 35 152-186 16-50 (80)
131 KOG1003 Actin filament-coating 48.3 1.1E+02 0.0023 30.1 8.4 38 159-196 164-201 (205)
132 KOG2659 LisH motif-containing 48.3 1.6E+02 0.0034 29.3 9.6 94 130-254 79-187 (228)
133 PF14235 DUF4337: Domain of un 48.1 98 0.0021 28.6 7.8 45 156-200 69-113 (157)
134 PF02388 FemAB: FemAB family; 47.6 90 0.002 32.1 8.2 59 131-192 240-298 (406)
135 PF05531 NPV_P10: Nucleopolyhe 47.6 1E+02 0.0023 25.9 7.1 52 137-191 15-66 (75)
136 cd07623 BAR_SNX1_2 The Bin/Amp 47.5 1.9E+02 0.0041 27.4 9.8 18 231-248 202-221 (224)
137 PTZ00421 coronin; Provisional 47.4 51 0.0011 35.0 6.6 44 138-184 448-491 (493)
138 PF09969 DUF2203: Uncharacteri 47.2 1.4E+02 0.003 26.5 8.3 64 130-198 4-67 (120)
139 PF13805 Pil1: Eisosome compon 47.2 52 0.0011 33.2 6.3 135 66-241 48-214 (271)
140 cd07667 BAR_SNX30 The Bin/Amph 47.2 1.1E+02 0.0023 30.4 8.3 20 83-102 81-100 (240)
141 PRK01919 tatB sec-independent 47.2 2.3E+02 0.0049 27.2 10.1 64 131-194 25-88 (169)
142 PF10168 Nup88: Nuclear pore c 47.0 1.7E+02 0.0037 33.0 10.8 9 131-139 534-542 (717)
143 cd07307 BAR The Bin/Amphiphysi 46.7 1.7E+02 0.0038 24.4 10.0 40 159-198 100-145 (194)
144 COG4372 Uncharacterized protei 46.6 1.5E+02 0.0032 32.2 9.7 39 154-192 232-270 (499)
145 PRK03947 prefoldin subunit alp 46.5 1E+02 0.0022 26.8 7.4 23 130-152 91-113 (140)
146 PRK09039 hypothetical protein; 46.5 1.1E+02 0.0023 31.3 8.5 19 270-289 290-308 (343)
147 PF12329 TMF_DNA_bd: TATA elem 46.4 82 0.0018 25.7 6.3 26 159-184 46-71 (74)
148 PRK14162 heat shock protein Gr 46.4 22 0.00048 34.0 3.5 11 348-358 175-185 (194)
149 PRK14158 heat shock protein Gr 46.3 25 0.00055 33.6 3.9 9 349-357 176-184 (194)
150 PRK14139 heat shock protein Gr 46.3 24 0.00052 33.5 3.7 11 348-358 164-174 (185)
151 PF00769 ERM: Ezrin/radixin/mo 46.2 1.1E+02 0.0024 29.8 8.2 40 155-194 84-123 (246)
152 KOG4515 Uncharacterized conser 46.1 2.3E+02 0.005 28.0 10.2 46 107-158 61-106 (217)
153 PF08647 BRE1: BRE1 E3 ubiquit 46.0 1.8E+02 0.0039 24.5 9.7 47 138-187 12-58 (96)
154 PF04728 LPP: Lipoprotein leuc 45.9 1.6E+02 0.0034 23.7 8.3 43 155-197 12-54 (56)
155 PF15556 Zwint: ZW10 interacto 45.9 1.1E+02 0.0024 30.6 8.1 50 145-194 139-189 (252)
156 PF05130 FlgN: FlgN protein; 45.7 1.4E+02 0.0031 24.4 7.7 24 160-183 44-67 (143)
157 PF02731 SKIP_SNW: SKIP/SNW do 45.7 1E+02 0.0022 29.1 7.6 52 134-185 103-156 (158)
158 PF07200 Mod_r: Modifier of ru 45.6 1.8E+02 0.0038 25.5 8.7 42 156-197 51-92 (150)
159 PF13807 GNVR: G-rich domain o 45.6 40 0.00087 27.0 4.4 33 158-190 2-34 (82)
160 TIGR02338 gimC_beta prefoldin, 45.2 84 0.0018 26.7 6.5 36 158-193 8-43 (110)
161 PF03938 OmpH: Outer membrane 45.2 1.6E+02 0.0036 25.5 8.4 21 162-182 78-98 (158)
162 PF15290 Syntaphilin: Golgi-lo 45.0 1.2E+02 0.0027 31.2 8.6 60 127-191 61-127 (305)
163 cd07665 BAR_SNX1 The Bin/Amphi 45.0 2.2E+02 0.0048 28.0 10.0 66 129-194 109-179 (234)
164 PF12777 MT: Microtubule-bindi 44.9 1.3E+02 0.0028 30.3 8.7 35 159-193 248-282 (344)
165 PRK10803 tol-pal system protei 44.9 82 0.0018 30.8 7.1 41 153-193 54-94 (263)
166 PRK11546 zraP zinc resistance 44.8 1.2E+02 0.0025 28.2 7.7 32 144-175 69-104 (143)
167 PF02996 Prefoldin: Prefoldin 44.8 86 0.0019 26.1 6.4 24 129-152 73-96 (120)
168 PF06476 DUF1090: Protein of u 44.7 64 0.0014 28.5 5.8 46 144-189 47-92 (115)
169 KOG1962 B-cell receptor-associ 44.6 56 0.0012 32.1 5.9 46 157-202 162-207 (216)
170 PRK03918 chromosome segregatio 44.6 1.7E+02 0.0036 32.2 10.1 8 105-112 134-141 (880)
171 COG3937 Uncharacterized conser 44.6 99 0.0022 27.7 6.9 26 159-184 82-107 (108)
172 PF13094 CENP-Q: CENP-Q, a CEN 44.6 2.3E+02 0.005 25.3 10.6 63 129-194 20-82 (160)
173 KOG2264 Exostosin EXT1L [Signa 44.4 1E+02 0.0023 34.9 8.5 38 156-193 96-133 (907)
174 PRK10780 periplasmic chaperone 44.4 1.7E+02 0.0038 26.3 8.7 45 133-177 47-100 (165)
175 PF09302 XLF: XLF (XRCC4-like 44.1 30 0.00065 30.9 3.8 42 137-184 129-170 (171)
176 PF10774 DUF4226: Domain of un 44.0 2.1E+02 0.0046 25.4 8.9 59 135-193 21-94 (112)
177 PRK14161 heat shock protein Gr 43.9 40 0.00087 31.7 4.7 9 349-357 158-166 (178)
178 PRK10476 multidrug resistance 43.3 1E+02 0.0022 30.3 7.6 44 159-202 99-142 (346)
179 PF06103 DUF948: Bacterial pro 43.2 1.8E+02 0.0039 23.6 9.5 34 159-192 53-86 (90)
180 PF00038 Filament: Intermediat 43.0 2.6E+02 0.0057 26.9 10.2 38 159-196 222-259 (312)
181 KOG1937 Uncharacterized conser 43.0 74 0.0016 34.8 7.0 47 160-209 345-394 (521)
182 PRK05561 DNA topoisomerase IV 42.8 84 0.0018 35.4 7.7 36 159-194 436-471 (742)
183 TIGR03185 DNA_S_dndD DNA sulfu 42.7 1.7E+02 0.0037 31.8 9.8 32 159-190 434-465 (650)
184 TIGR01834 PHA_synth_III_E poly 42.6 89 0.0019 32.3 7.2 50 138-187 254-316 (320)
185 PRK03947 prefoldin subunit alp 42.6 1E+02 0.0022 26.9 6.7 38 156-193 9-46 (140)
186 TIGR01843 type_I_hlyD type I s 42.5 1.9E+02 0.0042 28.3 9.3 40 159-198 143-182 (423)
187 PF13747 DUF4164: Domain of un 42.4 2.1E+02 0.0045 24.2 9.4 66 129-194 11-80 (89)
188 PRK04325 hypothetical protein; 42.3 1.9E+02 0.0041 23.6 8.1 28 159-186 22-49 (74)
189 cd07623 BAR_SNX1_2 The Bin/Amp 41.8 2.3E+02 0.0051 26.8 9.5 67 132-198 102-173 (224)
190 PRK00295 hypothetical protein; 41.8 1.8E+02 0.004 23.3 7.9 30 159-188 18-47 (68)
191 PRK14140 heat shock protein Gr 41.7 30 0.00065 33.0 3.6 10 349-358 173-182 (191)
192 COG5509 Uncharacterized small 41.7 41 0.00089 27.7 3.8 26 149-174 27-53 (65)
193 cd07666 BAR_SNX7 The Bin/Amphi 41.6 1.6E+02 0.0035 29.1 8.6 16 164-179 181-196 (243)
194 PF12240 Angiomotin_C: Angiomo 41.3 51 0.0011 32.3 5.1 38 147-184 130-167 (205)
195 PF07352 Phage_Mu_Gam: Bacteri 41.2 1.2E+02 0.0027 27.0 7.1 9 230-238 92-100 (149)
196 PF04111 APG6: Autophagy prote 41.1 3E+02 0.0066 27.8 10.6 47 131-177 45-95 (314)
197 PF04102 SlyX: SlyX; InterPro 41.1 1.2E+02 0.0026 24.2 6.4 36 159-194 10-45 (69)
198 KOG4603 TBP-1 interacting prot 41.0 1.1E+02 0.0024 29.8 7.2 49 156-209 89-142 (201)
199 PRK02793 phi X174 lysis protei 40.9 2E+02 0.0043 23.4 8.1 45 147-191 8-53 (72)
200 PF10458 Val_tRNA-synt_C: Valy 40.7 54 0.0012 25.7 4.3 26 158-183 2-27 (66)
201 PF14931 IFT20: Intraflagellar 40.6 2.7E+02 0.0059 24.9 9.6 70 131-200 29-106 (120)
202 TIGR00293 prefoldin, archaeal 40.5 1E+02 0.0022 26.2 6.3 40 129-168 82-122 (126)
203 PF10392 COG5: Golgi transport 40.4 2.5E+02 0.0055 24.6 9.5 34 159-192 85-118 (132)
204 PRK04325 hypothetical protein; 40.3 2.1E+02 0.0044 23.4 7.9 33 161-193 17-49 (74)
205 PF03148 Tektin: Tektin family 40.1 1.3E+02 0.0027 31.0 8.0 64 129-195 251-352 (384)
206 PRK04406 hypothetical protein; 40.0 2.1E+02 0.0046 23.5 8.4 46 146-191 10-56 (75)
207 TIGR00999 8a0102 Membrane Fusi 39.9 1.4E+02 0.003 27.5 7.5 61 134-194 21-81 (265)
208 PF10234 Cluap1: Clusterin-ass 39.7 1.9E+02 0.0042 29.2 8.9 25 70-94 116-140 (267)
209 PRK04778 septation ring format 39.7 1.1E+02 0.0024 32.9 7.8 87 130-240 401-511 (569)
210 PF09304 Cortex-I_coil: Cortex 39.7 1.9E+02 0.0041 25.9 7.9 34 159-192 43-76 (107)
211 PRK14154 heat shock protein Gr 39.6 82 0.0018 30.6 6.2 27 161-187 53-79 (208)
212 PF04912 Dynamitin: Dynamitin 39.5 4.4E+02 0.0095 27.0 11.7 66 129-194 295-363 (388)
213 PF05278 PEARLI-4: Arabidopsis 39.4 2.9E+02 0.0063 28.1 10.1 56 138-193 185-240 (269)
214 PLN02678 seryl-tRNA synthetase 39.3 1.3E+02 0.0028 32.1 8.1 32 163-194 74-105 (448)
215 PRK04654 sec-independent trans 39.2 1.5E+02 0.0032 29.4 7.8 58 131-192 36-93 (214)
216 PF07200 Mod_r: Modifier of ru 39.2 94 0.002 27.2 6.0 38 160-197 96-133 (150)
217 PF08172 CASP_C: CASP C termin 39.2 1.6E+02 0.0034 29.2 8.1 56 129-184 75-131 (248)
218 cd00584 Prefoldin_alpha Prefol 39.0 1.3E+02 0.0028 25.7 6.7 24 129-152 83-106 (129)
219 PF06008 Laminin_I: Laminin Do 38.9 3.3E+02 0.0071 26.2 10.1 30 163-192 223-252 (264)
220 PRK10997 yieM hypothetical pro 38.8 1.8E+02 0.0038 31.7 9.0 78 139-242 134-211 (487)
221 cd01107 HTH_BmrR Helix-Turn-He 38.8 1.2E+02 0.0026 25.5 6.4 16 160-175 82-97 (108)
222 KOG2911 Uncharacterized conser 38.8 56 0.0012 35.1 5.3 34 149-182 236-269 (439)
223 PHA02562 46 endonuclease subun 38.6 2.7E+02 0.0059 28.9 10.1 17 128-144 298-314 (562)
224 PRK02119 hypothetical protein; 38.6 2.2E+02 0.0047 23.3 8.1 44 147-190 9-53 (73)
225 PF02346 Vac_Fusion: Chordopox 38.5 2.1E+02 0.0045 23.0 7.3 51 130-183 2-52 (57)
226 PF06476 DUF1090: Protein of u 38.4 1.2E+02 0.0026 26.8 6.5 19 174-192 96-114 (115)
227 cd07627 BAR_Vps5p The Bin/Amph 38.4 2.9E+02 0.0062 26.0 9.4 70 129-198 101-181 (216)
228 PF05667 DUF812: Protein of un 38.3 6E+02 0.013 28.3 13.1 34 159-192 355-388 (594)
229 KOG1937 Uncharacterized conser 38.2 1.8E+02 0.0039 31.9 8.9 32 78-110 171-202 (521)
230 PF05266 DUF724: Protein of un 38.2 2.2E+02 0.0047 27.1 8.6 50 143-192 93-149 (190)
231 KOG4403 Cell surface glycoprot 38.2 1.6E+02 0.0035 32.4 8.5 19 174-192 309-327 (575)
232 PF04420 CHD5: CHD5-like prote 38.1 1.4E+02 0.0031 27.2 7.2 30 165-194 71-100 (161)
233 KOG3003 Molecular chaperone of 38.1 3.4E+02 0.0074 27.3 10.2 66 129-195 71-138 (236)
234 PF04949 Transcrip_act: Transc 38.1 3.6E+02 0.0079 25.7 9.9 73 126-198 24-122 (159)
235 TIGR02231 conserved hypothetic 38.1 1.5E+02 0.0032 31.3 8.2 22 75-96 72-93 (525)
236 PF15619 Lebercilin: Ciliary p 38.1 3.5E+02 0.0075 25.8 10.0 43 152-194 117-159 (194)
237 PF11559 ADIP: Afadin- and alp 38.0 2.8E+02 0.0061 24.4 9.5 64 127-193 29-92 (151)
238 PF12210 Hrs_helical: Hepatocy 38.0 2.9E+02 0.0062 24.5 9.0 71 129-205 5-91 (96)
239 COG4694 Uncharacterized protei 37.6 1.8E+02 0.0038 33.1 8.9 48 145-192 437-484 (758)
240 COG3334 Uncharacterized conser 37.5 2.7E+02 0.0058 27.1 9.1 70 131-209 65-134 (192)
241 PF07106 TBPIP: Tat binding pr 37.4 1.8E+02 0.0039 26.1 7.7 22 159-180 115-136 (169)
242 PRK00736 hypothetical protein; 37.3 2.2E+02 0.0047 22.9 7.8 28 159-186 18-45 (68)
243 COG1730 GIM5 Predicted prefold 37.3 2.1E+02 0.0045 26.5 8.1 52 128-185 89-140 (145)
244 TIGR02051 MerR Hg(II)-responsi 37.3 83 0.0018 27.1 5.3 20 89-109 7-26 (124)
245 PRK06569 F0F1 ATP synthase sub 37.2 2.7E+02 0.0059 26.0 8.9 54 171-242 85-138 (155)
246 PF11570 E2R135: Coiled-coil r 37.2 3.5E+02 0.0075 25.3 9.4 59 131-190 31-107 (136)
247 cd00890 Prefoldin Prefoldin is 37.1 1.5E+02 0.0032 24.7 6.7 14 130-143 84-97 (129)
248 cd00632 Prefoldin_beta Prefold 37.0 1.1E+02 0.0024 25.6 5.9 33 159-191 69-101 (105)
249 TIGR00293 prefoldin, archaeal 37.0 1.2E+02 0.0025 25.9 6.1 37 157-193 3-39 (126)
250 KOG4360 Uncharacterized coiled 36.9 2.2E+02 0.0048 31.8 9.4 18 272-289 387-404 (596)
251 PF09802 Sec66: Preprotein tra 36.7 1.8E+02 0.004 28.0 7.9 60 143-202 77-139 (190)
252 PRK15396 murein lipoprotein; P 36.6 2.5E+02 0.0054 23.7 7.7 42 156-197 35-76 (78)
253 COG3879 Uncharacterized protei 36.5 1.4E+02 0.003 30.0 7.3 40 153-192 57-96 (247)
254 PF07544 Med9: RNA polymerase 36.5 1.4E+02 0.0029 24.7 6.2 21 159-179 58-78 (83)
255 COG4980 GvpP Gas vesicle prote 36.4 1.2E+02 0.0026 27.3 6.2 39 143-183 75-113 (115)
256 PF09726 Macoilin: Transmembra 35.9 77 0.0017 35.6 6.1 11 268-278 630-640 (697)
257 PF06008 Laminin_I: Laminin Do 35.9 2.7E+02 0.0058 26.8 9.0 17 177-193 123-139 (264)
258 TIGR01730 RND_mfp RND family e 35.6 2E+02 0.0043 27.0 7.9 28 167-194 102-129 (322)
259 TIGR03752 conj_TIGR03752 integ 35.6 1.8E+02 0.0039 31.7 8.5 56 130-185 67-141 (472)
260 COG3074 Uncharacterized protei 35.4 2.2E+02 0.0047 24.3 7.2 8 138-145 6-13 (79)
261 PF14362 DUF4407: Domain of un 35.4 2.7E+02 0.0058 27.1 9.0 35 159-193 134-168 (301)
262 PF05701 WEMBL: Weak chloropla 35.3 1.4E+02 0.0031 31.9 7.7 35 159-193 40-74 (522)
263 PLN02320 seryl-tRNA synthetase 35.2 1.4E+02 0.003 32.5 7.7 33 162-194 132-164 (502)
264 PF06698 DUF1192: Protein of u 35.2 74 0.0016 25.6 4.3 30 159-188 27-56 (59)
265 PRK14153 heat shock protein Gr 35.1 63 0.0014 31.0 4.6 11 348-358 168-178 (194)
266 PF00261 Tropomyosin: Tropomyo 35.0 1.2E+02 0.0025 29.0 6.4 40 159-198 77-116 (237)
267 PF04568 IATP: Mitochondrial A 34.5 2.3E+02 0.0049 24.9 7.5 54 130-183 46-99 (100)
268 KOG0996 Structural maintenance 34.5 1.8E+02 0.0039 35.2 8.8 60 135-194 509-569 (1293)
269 COG4026 Uncharacterized protei 34.5 2.5E+02 0.0054 28.6 8.7 49 145-193 133-182 (290)
270 PF04880 NUDE_C: NUDE protein, 34.4 69 0.0015 30.2 4.6 40 137-176 4-47 (166)
271 PRK14150 heat shock protein Gr 34.3 60 0.0013 30.8 4.3 11 192-202 63-73 (193)
272 PRK00888 ftsB cell division pr 34.3 1.4E+02 0.003 25.8 6.1 22 155-176 29-50 (105)
273 TIGR00636 PduO_Nterm ATP:cob(I 34.2 1.8E+02 0.0038 27.4 7.3 44 133-176 49-96 (171)
274 KOG3915 Transcription regulato 34.2 1.7E+02 0.0037 32.4 8.0 31 137-168 504-536 (641)
275 PF06698 DUF1192: Protein of u 34.2 1.2E+02 0.0025 24.5 5.2 27 149-175 23-50 (59)
276 TIGR00998 8a0101 efflux pump m 34.2 3.3E+02 0.0072 26.2 9.3 53 137-192 81-133 (334)
277 KOG0971 Microtubule-associated 34.1 2.1E+02 0.0046 34.0 9.1 43 152-194 395-437 (1243)
278 PF12718 Tropomyosin_1: Tropom 34.0 3.6E+02 0.0078 24.4 9.7 27 168-194 74-100 (143)
279 PF07303 Occludin_ELL: Occludi 33.8 1.1E+02 0.0023 26.4 5.4 53 145-198 14-66 (101)
280 PRK14144 heat shock protein Gr 33.7 43 0.00093 32.3 3.3 9 349-357 180-188 (199)
281 PF03234 CDC37_N: Cdc37 N term 33.6 1.3E+02 0.0028 28.6 6.3 38 156-193 35-72 (177)
282 TIGR01005 eps_transp_fam exopo 33.5 1.8E+02 0.0039 31.9 8.3 21 74-94 288-308 (754)
283 PRK10636 putative ABC transpor 33.5 2.1E+02 0.0045 31.1 8.7 24 175-198 599-622 (638)
284 TIGR02169 SMC_prok_A chromosom 33.5 2.7E+02 0.0059 31.1 9.7 8 391-398 638-645 (1164)
285 cd04787 HTH_HMRTR_unk Helix-Tu 33.4 1.4E+02 0.003 26.0 6.1 11 161-171 87-97 (133)
286 PF05130 FlgN: FlgN protein; 33.4 2.7E+02 0.0058 22.8 8.3 31 161-191 35-65 (143)
287 KOG3501 Molecular chaperone Pr 33.3 3.4E+02 0.0073 24.7 8.4 39 156-194 70-108 (114)
288 PF06156 DUF972: Protein of un 33.3 3.2E+02 0.0069 24.0 8.2 23 132-154 4-26 (107)
289 TIGR02169 SMC_prok_A chromosom 33.1 2.3E+02 0.0051 31.6 9.1 13 133-145 678-690 (1164)
290 PRK13729 conjugal transfer pil 33.1 1.5E+02 0.0032 32.3 7.4 41 143-183 79-120 (475)
291 TIGR03017 EpsF chain length de 33.1 1.8E+02 0.0038 29.4 7.6 34 159-192 163-196 (444)
292 TIGR00219 mreC rod shape-deter 33.0 5E+02 0.011 25.8 11.2 44 151-194 64-107 (283)
293 cd00890 Prefoldin Prefoldin is 33.0 1.3E+02 0.0028 25.1 5.7 34 159-192 93-126 (129)
294 COG4942 Membrane-bound metallo 32.9 3.7E+02 0.0079 29.0 10.1 37 159-195 86-122 (420)
295 KOG2004 Mitochondrial ATP-depe 32.8 1.8E+02 0.0039 33.9 8.2 76 106-192 251-331 (906)
296 PF08537 NBP1: Fungal Nap bind 32.7 1.3E+02 0.0028 31.4 6.6 42 157-198 179-223 (323)
297 PRK10698 phage shock protein P 32.6 1.4E+02 0.0031 28.6 6.6 42 157-198 103-144 (222)
298 COG5293 Predicted ATPase [Gene 32.6 2.2E+02 0.0047 31.6 8.4 69 130-198 306-382 (591)
299 cd04790 HTH_Cfa-like_unk Helix 32.6 1.6E+02 0.0035 27.0 6.7 13 229-241 116-128 (172)
300 PF03961 DUF342: Protein of un 32.6 3.4E+02 0.0074 28.2 9.8 34 160-193 375-408 (451)
301 cd03016 PRX_1cys Peroxiredoxin 32.6 23 0.0005 32.6 1.2 16 347-362 163-178 (203)
302 cd00632 Prefoldin_beta Prefold 32.5 2.3E+02 0.0049 23.8 7.0 49 145-193 48-96 (105)
303 PF04849 HAP1_N: HAP1 N-termin 32.5 3.5E+02 0.0076 28.0 9.6 67 127-193 60-130 (306)
304 PF02388 FemAB: FemAB family; 32.5 2.3E+02 0.005 29.2 8.4 19 174-192 273-291 (406)
305 PRK13902 alaS alanyl-tRNA synt 32.4 3.1E+02 0.0066 31.9 10.1 56 132-187 732-788 (900)
306 TIGR02971 heterocyst_DevB ABC 32.3 2.2E+02 0.0048 27.5 7.9 37 166-202 89-125 (327)
307 KOG0980 Actin-binding protein 32.3 2.4E+02 0.0052 33.2 9.2 51 133-183 431-482 (980)
308 PF04350 PilO: Pilus assembly 32.1 24 0.00052 29.8 1.2 46 139-184 2-47 (144)
309 PRK12802 flagellin; Provisiona 32.1 2.6E+02 0.0056 27.2 8.3 55 127-181 64-128 (282)
310 PRK09841 cryptic autophosphory 32.0 1.6E+02 0.0035 32.5 7.7 47 146-192 246-292 (726)
311 PRK11578 macrolide transporter 32.0 5E+02 0.011 25.9 10.4 34 161-194 145-178 (370)
312 PF09371 Tex_N: Tex-like prote 32.0 1.8E+02 0.0038 27.8 7.0 81 128-209 9-107 (193)
313 PF15290 Syntaphilin: Golgi-lo 31.8 1.9E+02 0.0041 30.0 7.5 74 121-194 60-151 (305)
314 PF12004 DUF3498: Domain of un 31.6 16 0.00034 39.5 0.0 14 174-187 383-396 (495)
315 PRK14163 heat shock protein Gr 31.6 49 0.0011 32.3 3.3 13 347-359 167-179 (214)
316 TIGR03017 EpsF chain length de 31.5 3.3E+02 0.0071 27.6 9.2 17 77-93 257-273 (444)
317 cd04770 HTH_HMRTR Helix-Turn-H 31.3 1.8E+02 0.0039 24.6 6.3 7 89-95 8-14 (123)
318 PF02609 Exonuc_VII_S: Exonucl 31.3 1.8E+02 0.0038 22.0 5.6 29 130-158 7-35 (53)
319 cd01109 HTH_YyaN Helix-Turn-He 31.2 1.7E+02 0.0037 24.6 6.2 20 88-109 7-27 (113)
320 cd04772 HTH_TioE_rpt1 First He 31.2 82 0.0018 26.3 4.2 7 89-95 8-14 (99)
321 PF09340 NuA4: Histone acetylt 31.2 48 0.001 27.5 2.8 46 157-202 6-51 (80)
322 PRK14155 heat shock protein Gr 31.1 40 0.00087 32.5 2.6 48 168-238 14-61 (208)
323 KOG4191 Histone acetyltransfer 31.1 2.2E+02 0.0049 31.2 8.2 68 131-205 403-470 (516)
324 KOG3335 Predicted coiled-coil 31.1 1.2E+02 0.0027 29.3 5.8 46 151-196 97-142 (181)
325 PF02646 RmuC: RmuC family; I 31.0 2E+02 0.0044 28.6 7.6 13 185-197 73-85 (304)
326 PF06657 Cep57_MT_bd: Centroso 30.9 3.1E+02 0.0067 22.7 8.5 19 137-155 18-36 (79)
327 TIGR00344 alaS alanine--tRNA l 30.9 3.6E+02 0.0077 31.1 10.3 54 132-185 697-751 (851)
328 TIGR00606 rad50 rad50. This fa 30.8 2.2E+02 0.0048 33.7 8.9 44 155-198 883-926 (1311)
329 PF08654 DASH_Dad2: DASH compl 30.8 2.9E+02 0.0062 24.2 7.5 52 141-192 2-53 (103)
330 COG5374 Uncharacterized conser 30.6 3.4E+02 0.0073 26.6 8.6 91 90-192 61-175 (192)
331 cd00584 Prefoldin_alpha Prefol 30.6 1.7E+02 0.0037 25.0 6.1 35 158-192 4-38 (129)
332 PRK09343 prefoldin subunit bet 30.5 2E+02 0.0044 25.1 6.7 43 141-193 5-47 (121)
333 PRK15422 septal ring assembly 30.5 2.7E+02 0.0058 23.9 7.0 29 136-167 4-32 (79)
334 cd01279 HTH_HspR-like Helix-Tu 30.5 89 0.0019 26.0 4.3 84 87-181 7-93 (98)
335 PF04111 APG6: Autophagy prote 30.4 5.3E+02 0.012 26.1 10.4 14 264-277 149-162 (314)
336 PF04625 DEC-1_N: DEC-1 protei 30.4 6E+02 0.013 27.2 10.9 17 67-83 154-170 (407)
337 PRK04863 mukB cell division pr 30.4 2.8E+02 0.0061 34.1 9.7 12 232-243 411-422 (1486)
338 PF00804 Syntaxin: Syntaxin; 30.3 2E+02 0.0044 22.5 6.1 20 164-183 42-61 (103)
339 KOG4643 Uncharacterized coiled 30.1 4.1E+02 0.0089 32.0 10.5 60 129-191 177-236 (1195)
340 PF07989 Microtub_assoc: Micro 30.1 3.2E+02 0.0068 22.6 9.3 26 165-190 48-73 (75)
341 PRK04406 hypothetical protein; 30.0 3.2E+02 0.0069 22.6 8.0 35 159-193 17-51 (75)
342 TIGR02047 CadR-PbrR Cd(II)/Pb( 30.0 1.5E+02 0.0032 25.8 5.7 21 88-109 7-27 (127)
343 KOG0994 Extracellular matrix g 30.0 2.1E+02 0.0045 35.0 8.3 51 147-197 1697-1747(1758)
344 PRK05431 seryl-tRNA synthetase 29.8 2E+02 0.0044 30.1 7.6 22 175-196 74-95 (425)
345 TIGR00634 recN DNA repair prot 29.8 2.1E+02 0.0045 30.7 7.9 13 267-279 304-316 (563)
346 PF07989 Microtub_assoc: Micro 29.6 1.3E+02 0.0029 24.8 5.0 31 153-183 43-73 (75)
347 PF05266 DUF724: Protein of un 29.6 4.1E+02 0.0088 25.3 8.9 27 168-194 153-179 (190)
348 PF15397 DUF4618: Domain of un 29.5 2.6E+02 0.0056 28.3 7.9 44 141-184 61-105 (258)
349 KOG4677 Golgi integral membran 29.5 3E+02 0.0064 30.5 8.8 35 166-200 237-271 (554)
350 PRK10869 recombination and rep 29.3 2.1E+02 0.0046 30.9 7.8 57 130-186 318-378 (553)
351 PRK02119 hypothetical protein; 29.3 3.2E+02 0.0069 22.3 7.9 26 162-187 32-57 (73)
352 PF08781 DP: Transcription fac 29.2 2.1E+02 0.0045 26.6 6.7 38 153-194 1-38 (142)
353 PF10226 DUF2216: Uncharacteri 29.1 2.9E+02 0.0064 27.1 8.0 24 174-197 108-131 (195)
354 PF11853 DUF3373: Protein of u 29.1 53 0.0011 35.7 3.4 41 149-191 27-67 (489)
355 PF13744 HTH_37: Helix-turn-he 29.0 2.7E+02 0.0058 22.2 6.6 57 159-243 17-73 (80)
356 PF03962 Mnd1: Mnd1 family; I 28.8 1.4E+02 0.0031 28.1 5.7 10 128-137 29-38 (188)
357 COG1730 GIM5 Predicted prefold 28.7 1.9E+02 0.0042 26.7 6.5 31 159-193 19-49 (145)
358 PRK14147 heat shock protein Gr 28.7 52 0.0011 30.7 2.9 9 349-357 152-160 (172)
359 PF04201 TPD52: Tumour protein 28.5 1.5E+02 0.0034 28.1 5.9 40 154-193 37-81 (162)
360 cd04785 HTH_CadR-PbrR-like Hel 28.4 1.4E+02 0.003 25.8 5.3 20 89-109 8-27 (126)
361 PF14193 DUF4315: Domain of un 28.4 1.8E+02 0.004 24.6 5.8 33 156-188 4-36 (83)
362 COG1344 FlgL Flagellin and rel 28.3 2.7E+02 0.0058 28.1 8.0 58 125-182 60-127 (360)
363 PF06632 XRCC4: DNA double-str 28.3 4.6E+02 0.01 27.2 9.7 24 168-191 188-211 (342)
364 TIGR02044 CueR Cu(I)-responsiv 28.2 1.4E+02 0.0029 25.8 5.1 9 162-170 88-96 (127)
365 PRK14149 heat shock protein Gr 28.2 50 0.0011 31.6 2.7 30 173-202 42-71 (191)
366 cd04783 HTH_MerR1 Helix-Turn-H 28.1 1.5E+02 0.0031 25.6 5.3 14 182-195 95-108 (126)
367 PRK11281 hypothetical protein; 28.1 1.8E+02 0.0039 34.6 7.5 67 127-193 37-106 (1113)
368 PF06005 DUF904: Protein of un 28.1 3.4E+02 0.0074 22.3 8.6 31 155-185 41-71 (72)
369 PRK12805 flagellin; Provisiona 28.1 3.2E+02 0.007 26.8 8.3 58 125-182 60-127 (287)
370 PF04011 LemA: LemA family; I 28.1 4.3E+02 0.0093 24.1 8.6 25 173-197 117-141 (186)
371 PF06133 DUF964: Protein of un 28.0 2.9E+02 0.0062 22.7 6.8 18 179-196 79-96 (108)
372 PLN02939 transferase, transfer 27.7 1.3E+02 0.0028 35.5 6.2 85 86-170 255-341 (977)
373 PRK14159 heat shock protein Gr 27.7 56 0.0012 30.8 2.9 12 347-358 156-167 (176)
374 cd00187 TOP4c DNA Topoisomeras 27.7 3.4E+02 0.0074 29.0 8.9 23 66-88 229-251 (445)
375 PF13097 CENP-U: CENP-A nucleo 27.5 1.8E+02 0.004 27.9 6.2 29 144-172 143-171 (175)
376 smart00338 BRLZ basic region l 27.5 2.9E+02 0.0062 21.2 9.3 48 137-184 10-57 (65)
377 COG1340 Uncharacterized archae 27.4 5.7E+02 0.012 26.4 10.0 35 159-193 213-247 (294)
378 PF02601 Exonuc_VII_L: Exonucl 27.4 5.2E+02 0.011 25.3 9.6 36 159-194 171-211 (319)
379 PF08614 ATG16: Autophagy prot 27.4 5E+02 0.011 24.0 10.2 64 133-196 116-180 (194)
380 PF04012 PspA_IM30: PspA/IM30 27.4 2.9E+02 0.0063 25.6 7.5 39 159-197 104-142 (221)
381 PF13514 AAA_27: AAA domain 27.4 3.1E+02 0.0068 31.9 9.2 63 130-192 151-213 (1111)
382 TIGR03007 pepcterm_ChnLen poly 27.3 1.6E+02 0.0035 30.3 6.4 20 170-189 327-346 (498)
383 PF00517 GP41: Retroviral enve 27.2 4.4E+02 0.0096 25.1 8.8 55 129-185 10-64 (204)
384 cd04766 HTH_HspR Helix-Turn-He 27.1 1.4E+02 0.0029 24.3 4.7 29 148-176 60-88 (91)
385 PRK13979 DNA topoisomerase IV 27.1 1.3E+02 0.0029 35.0 6.2 20 68-87 266-285 (957)
386 PRK00846 hypothetical protein; 27.0 3.8E+02 0.0083 22.5 7.9 43 144-186 10-53 (77)
387 COG0497 RecN ATPase involved i 26.9 2.2E+02 0.0049 31.5 7.6 30 129-158 262-291 (557)
388 PF14712 Snapin_Pallidin: Snap 26.9 3.4E+02 0.0074 21.9 8.9 28 128-155 16-43 (92)
389 PF04100 Vps53_N: Vps53-like, 26.9 2.7E+02 0.0057 28.9 7.8 37 161-197 58-94 (383)
390 COG3206 GumC Uncharacterized p 26.8 3.2E+02 0.0069 28.3 8.4 19 176-194 375-393 (458)
391 COG1382 GimC Prefoldin, chaper 26.7 2.3E+02 0.0051 25.6 6.5 40 156-195 73-112 (119)
392 PF02996 Prefoldin: Prefoldin 26.6 2.3E+02 0.005 23.5 6.1 35 159-193 83-117 (120)
393 PF02403 Seryl_tRNA_N: Seryl-t 26.5 3.7E+02 0.0081 22.2 7.9 36 159-194 49-94 (108)
394 PRK14064 exodeoxyribonuclease 26.4 2.1E+02 0.0046 23.6 5.7 49 131-196 15-63 (75)
395 PRK12584 flagellin A; Reviewed 26.4 2.9E+02 0.0064 29.9 8.3 58 125-182 62-129 (510)
396 PRK14156 heat shock protein Gr 26.4 2.4E+02 0.0053 26.7 6.8 45 147-191 21-65 (177)
397 PF02646 RmuC: RmuC family; I 26.3 3.1E+02 0.0066 27.4 7.9 47 154-200 227-273 (304)
398 KOG2115 Vacuolar sorting prote 26.3 3.6E+02 0.0077 31.9 9.2 29 159-187 295-323 (951)
399 TIGR03495 phage_LysB phage lys 26.3 5E+02 0.011 23.8 8.6 29 173-201 67-95 (135)
400 PF05010 TACC: Transforming ac 26.2 6.2E+02 0.013 24.7 10.0 62 130-191 101-178 (207)
401 KOG4672 Uncharacterized conser 26.2 1.3E+02 0.0029 32.6 5.5 20 343-362 193-212 (487)
402 PF08946 Osmo_CC: Osmosensory 26.1 1.1E+02 0.0025 23.8 3.8 28 147-174 5-33 (46)
403 PRK15178 Vi polysaccharide exp 26.1 1.8E+02 0.004 31.1 6.6 44 129-172 279-333 (434)
404 PF08581 Tup_N: Tup N-terminal 26.1 1.5E+02 0.0033 24.8 4.8 15 159-173 63-77 (79)
405 PF07352 Phage_Mu_Gam: Bacteri 25.9 3.7E+02 0.0081 23.9 7.6 19 180-198 41-59 (149)
406 KOG0994 Extracellular matrix g 25.9 5.6E+02 0.012 31.7 10.7 111 127-244 1406-1523(1758)
407 PF12010 DUF3502: Domain of un 25.7 1.7E+02 0.0037 25.8 5.4 14 173-186 100-113 (134)
408 KOG2685 Cystoskeletal protein 25.6 2.3E+02 0.0049 30.6 7.1 55 138-192 276-331 (421)
409 PRK13676 hypothetical protein; 25.6 2.3E+02 0.005 24.0 6.0 34 159-197 67-100 (114)
410 TIGR01062 parC_Gneg DNA topois 25.6 2.1E+02 0.0045 32.6 7.2 41 159-199 430-470 (735)
411 PRK00846 hypothetical protein; 25.6 4.1E+02 0.0089 22.4 8.6 29 159-187 33-61 (77)
412 PRK09578 periplasmic multidrug 25.5 5.2E+02 0.011 25.9 9.4 10 329-338 284-293 (385)
413 PRK05771 V-type ATP synthase s 25.5 4.5E+02 0.0098 28.7 9.5 34 159-192 92-125 (646)
414 PRK02793 phi X174 lysis protei 25.4 3.7E+02 0.0081 21.8 7.9 22 166-187 35-56 (72)
415 PRK15030 multidrug efflux syst 25.4 5.5E+02 0.012 26.1 9.6 9 330-338 286-294 (397)
416 PRK12807 flagellin; Provisiona 25.3 3.9E+02 0.0085 26.2 8.3 55 126-180 61-125 (287)
417 smart00545 JmjN Small domain f 25.3 28 0.0006 26.0 0.4 10 265-274 6-15 (42)
418 PF12325 TMF_TATA_bd: TATA ele 25.2 5E+02 0.011 23.2 8.8 25 170-194 64-88 (120)
419 PF15456 Uds1: Up-regulated Du 25.1 2.2E+02 0.0047 25.6 6.0 31 159-190 21-51 (124)
420 PRK14127 cell division protein 25.1 1.7E+02 0.0036 26.0 5.2 26 159-184 43-68 (109)
421 PRK00373 V-type ATP synthase s 25.1 5.8E+02 0.013 24.0 9.6 82 104-192 99-190 (204)
422 PF15619 Lebercilin: Ciliary p 25.1 3.6E+02 0.0077 25.7 7.7 42 159-200 138-183 (194)
423 TIGR01845 outer_NodT efflux tr 25.1 5.9E+02 0.013 25.3 9.6 31 164-194 212-242 (454)
424 PRK08411 flagellin; Reviewed 25.0 3.1E+02 0.0068 30.6 8.2 58 125-182 62-129 (572)
425 PF03310 Cauli_DNA-bind: Cauli 25.0 3.4E+02 0.0073 24.9 7.1 59 129-193 3-67 (121)
426 PRK11519 tyrosine kinase; Prov 24.9 2.5E+02 0.0054 31.1 7.6 34 159-192 259-292 (719)
427 COG0172 SerS Seryl-tRNA synthe 24.9 2.9E+02 0.0062 29.8 7.8 32 163-194 71-102 (429)
428 PRK00409 recombination and DNA 24.9 5.1E+02 0.011 29.5 10.1 65 132-196 516-592 (782)
429 PF05377 FlaC_arch: Flagella a 24.9 2.9E+02 0.0063 22.1 6.0 38 159-196 6-43 (55)
430 cd07624 BAR_SNX7_30 The Bin/Am 24.9 5.7E+02 0.012 23.8 10.1 31 74-104 35-65 (200)
431 PRK13588 flagellin B; Provisio 24.9 3.1E+02 0.0068 30.0 8.1 58 125-182 62-129 (514)
432 KOG0250 DNA repair protein RAD 24.7 4.2E+02 0.0091 31.8 9.5 44 159-202 740-783 (1074)
433 PF04012 PspA_IM30: PspA/IM30 24.7 2.5E+02 0.0055 26.0 6.6 42 153-194 91-132 (221)
434 PF13935 Ead_Ea22: Ead/Ea22-li 24.7 3.1E+02 0.0066 24.5 6.8 43 148-190 69-113 (139)
435 PF04394 DUF536: Protein of un 24.7 2.6E+02 0.0056 21.4 5.4 33 139-171 6-42 (45)
436 PRK09514 zntR zinc-responsive 24.6 1.7E+02 0.0037 25.9 5.2 12 183-194 100-111 (140)
437 PRK10722 hypothetical protein; 24.6 4.4E+02 0.0096 26.7 8.5 64 127-193 139-202 (247)
438 PF05615 THOC7: Tho complex su 24.6 4.7E+02 0.01 22.8 10.1 73 125-198 42-118 (139)
439 PRK09859 multidrug efflux syst 24.5 5.5E+02 0.012 25.8 9.4 11 329-339 281-291 (385)
440 PF08232 Striatin: Striatin fa 24.5 2.5E+02 0.0055 25.2 6.3 40 154-193 26-65 (134)
441 cd07625 BAR_Vps17p The Bin/Amp 24.5 3.1E+02 0.0066 27.0 7.3 102 128-241 114-227 (230)
442 PF03234 CDC37_N: Cdc37 N term 24.4 2.9E+02 0.0062 26.3 6.9 48 136-189 28-75 (177)
443 PF09766 FimP: Fms-interacting 24.4 4.2E+02 0.0091 27.2 8.6 54 141-194 89-142 (355)
444 PF07888 CALCOCO1: Calcium bin 24.3 3.6E+02 0.0078 30.0 8.5 54 139-192 335-389 (546)
445 PF12128 DUF3584: Protein of u 24.3 6.5E+02 0.014 29.9 11.0 14 229-242 768-781 (1201)
446 PF09969 DUF2203: Uncharacteri 24.3 4.1E+02 0.0088 23.6 7.4 23 162-184 45-67 (120)
447 cd01478 Sec23-like Sec23-like: 24.3 40 0.00087 33.0 1.3 66 177-256 106-180 (267)
448 PF04906 Tweety: Tweety; Inte 24.3 5.7E+02 0.012 26.8 9.7 88 127-241 94-181 (406)
449 COG1394 NtpD Archaeal/vacuolar 24.2 4.5E+02 0.0097 25.8 8.3 82 103-192 97-188 (211)
450 PRK09174 F0F1 ATP synthase sub 24.1 6.3E+02 0.014 24.1 10.1 31 127-157 96-126 (204)
451 PRK12803 flagellin; Provisiona 24.0 4E+02 0.0087 27.4 8.4 57 126-182 61-127 (335)
452 TIGR02894 DNA_bind_RsfA transc 23.9 3.2E+02 0.007 26.0 7.1 37 160-196 104-140 (161)
453 PLN02678 seryl-tRNA synthetase 23.9 3E+02 0.0064 29.5 7.7 18 177-194 81-98 (448)
454 PF11740 KfrA_N: Plasmid repli 23.9 4.3E+02 0.0092 22.0 9.2 33 158-190 86-118 (120)
455 cd04779 HTH_MerR-like_sg4 Heli 23.8 3.6E+02 0.0079 24.1 7.2 33 160-192 81-113 (134)
456 COG5493 Uncharacterized conser 23.8 5.8E+02 0.013 25.6 9.0 21 126-146 24-44 (231)
457 KOG0804 Cytoplasmic Zn-finger 23.7 5.7E+02 0.012 28.2 9.6 59 136-194 378-448 (493)
458 PF15030 DUF4527: Protein of u 23.6 3.1E+02 0.0067 28.1 7.3 45 139-183 50-102 (277)
459 KOG3130 Uncharacterized conser 23.6 45 0.00097 36.0 1.6 25 395-419 257-281 (514)
460 KOG2669 Regulator of nuclear m 23.6 7.8E+02 0.017 25.8 10.3 23 172-194 217-239 (325)
461 KOG4552 Vitamin-D-receptor int 23.6 4.9E+02 0.011 26.3 8.6 7 132-138 25-31 (272)
462 cd01111 HTH_MerD Helix-Turn-He 23.6 2.7E+02 0.0058 23.7 6.1 11 129-139 61-71 (107)
463 PF15556 Zwint: ZW10 interacto 23.6 6.7E+02 0.015 25.3 9.4 29 108-136 35-63 (252)
464 PF07851 TMPIT: TMPIT-like pro 23.5 4.5E+02 0.0098 27.4 8.7 20 173-192 67-86 (330)
465 PF10198 Ada3: Histone acetylt 23.5 5.5E+02 0.012 23.2 8.9 60 127-193 31-90 (131)
466 PF12958 DUF3847: Protein of u 23.4 2.2E+02 0.0047 24.4 5.4 31 157-187 5-35 (86)
467 PF10475 DUF2450: Protein of u 23.4 6.9E+02 0.015 24.5 9.6 15 182-196 126-140 (291)
468 TIGR02131 phaP_Bmeg polyhydrox 23.4 3.3E+02 0.0071 25.9 7.0 31 131-161 109-139 (165)
469 TIGR00763 lon ATP-dependent pr 23.4 1.7E+02 0.0037 32.6 6.1 22 74-95 120-141 (775)
470 COG1382 GimC Prefoldin, chaper 23.4 4.4E+02 0.0095 23.9 7.5 34 159-192 69-102 (119)
471 PF13874 Nup54: Nucleoporin co 23.3 5.3E+02 0.012 22.9 8.8 53 132-184 43-96 (141)
472 PF09006 Surfac_D-trimer: Lung 23.3 2.2E+02 0.0047 22.3 4.8 28 162-189 1-28 (46)
473 COG1538 TolC Outer membrane pr 23.3 6.4E+02 0.014 25.7 9.7 32 163-194 202-233 (457)
474 PF13166 AAA_13: AAA domain 23.3 5E+02 0.011 28.0 9.3 43 234-282 508-555 (712)
475 cd04784 HTH_CadR-PbrR Helix-Tu 23.3 2.6E+02 0.0057 23.9 6.0 10 185-194 100-109 (127)
476 cd01106 HTH_TipAL-Mta Helix-Tu 23.2 2.5E+02 0.0053 23.2 5.6 24 87-111 6-29 (103)
477 KOG2185 Predicted RNA-processi 23.2 1.9E+02 0.0041 31.5 6.0 45 154-198 414-468 (486)
478 PF04508 Pox_A_type_inc: Viral 23.2 86 0.0019 21.3 2.3 20 168-187 2-21 (23)
479 PRK10929 putative mechanosensi 23.1 4E+02 0.0086 31.9 9.1 64 130-193 27-91 (1109)
480 PF09403 FadA: Adhesion protei 23.1 5.7E+02 0.012 23.2 9.6 43 130-172 21-64 (126)
481 PF03233 Cauli_AT: Aphid trans 23.1 4.5E+02 0.0097 25.2 7.8 75 119-193 80-161 (163)
482 PF15254 CCDC14: Coiled-coil d 23.0 2.8E+02 0.0061 32.3 7.6 30 159-188 493-522 (861)
483 TIGR02785 addA_Gpos recombinat 23.0 2.8E+02 0.0061 32.9 7.9 18 225-242 354-371 (1232)
484 PRK00736 hypothetical protein; 22.9 4.1E+02 0.0088 21.4 7.6 33 161-193 13-45 (68)
485 COG3599 DivIVA Cell division i 22.9 6.2E+02 0.013 24.7 9.0 41 132-175 26-66 (212)
486 KOG2074 RNA polymerase II tran 22.8 2E+02 0.0044 31.9 6.3 66 137-207 478-545 (548)
487 PF10037 MRP-S27: Mitochondria 22.8 6.6E+02 0.014 26.9 9.9 13 73-85 262-274 (429)
488 PF14389 Lzipper-MIP1: Leucine 22.8 4.6E+02 0.01 22.0 7.4 48 138-185 6-86 (88)
489 TIGR03545 conserved hypothetic 22.8 3E+02 0.0065 30.2 7.6 68 126-196 188-255 (555)
490 PRK04863 mukB cell division pr 22.8 4.3E+02 0.0093 32.6 9.4 69 130-201 349-417 (1486)
491 PF01519 DUF16: Protein of unk 22.8 5.5E+02 0.012 22.9 8.7 56 138-193 39-100 (102)
492 PRK14063 exodeoxyribonuclease 22.8 3.8E+02 0.0082 22.2 6.5 52 145-196 7-62 (76)
493 COG1722 XseB Exonuclease VII s 22.7 4E+02 0.0087 22.4 6.7 53 147-199 14-70 (81)
494 PF05816 TelA: Toxic anion res 22.6 8E+02 0.017 24.7 10.2 65 129-193 84-149 (333)
495 TIGR03319 YmdA_YtgF conserved 22.6 4.5E+02 0.0097 28.5 8.8 60 138-200 85-144 (514)
496 PHA02675 ORF104 fusion protein 22.6 5.1E+02 0.011 22.7 7.4 53 125-183 29-81 (90)
497 PF09486 HrpB7: Bacterial type 22.6 6.5E+02 0.014 23.6 10.1 70 130-199 76-146 (158)
498 TIGR00833 actII Transport prot 22.5 7.9E+02 0.017 28.1 11.0 106 76-193 528-633 (910)
499 PF12325 TMF_TATA_bd: TATA ele 22.5 5.6E+02 0.012 22.9 9.3 65 132-196 51-118 (120)
500 PF15361 RIC3: Resistance to i 22.5 99 0.0021 28.5 3.4 23 173-195 130-152 (152)
No 1
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=99.97 E-value=7.3e-32 Score=254.02 Aligned_cols=125 Identities=22% Similarity=0.367 Sum_probs=118.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCC
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRVKSEGG 211 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KRlKs~~~ 211 (420)
-+||+||.++|..+.+.++..-|.+++++.|+.|+++||.||+.|++++|+||+||.+|.++| ||++.|+|++
T Consensus 46 v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~-----fqA~qKLksi-- 118 (272)
T KOG4552|consen 46 VNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTAC-----FQANQKLKSI-- 118 (272)
T ss_pred HHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH--
Confidence 489999999999998888888889999999999999999999999999999999999999999 9998888886
Q ss_pred CCCCCCCCCcccccccCCChHHHHHHHhhhhccc--CCCCCCCCCCCCCCCCCCCCCcHHHHhhhhhhh
Q 044000 212 DGNDDDSGSCSTTVESRLNLSDILSYAHRISYTT--FAPPEFGAGQGPLRGALPPAPQEEQMRASQLYT 278 (420)
Q Consensus 212 ~~~~e~~~~~~~A~~~~V~~eDLIsYAHRIS~TT--sAPp~wqpGq~PlR~~~PPaPQEeeMRaG~L~~ 278 (420)
++|++++|++|+||+||||||.+| |||++|++| ||+| |||||+|||+|+|+.
T Consensus 119 ----------~~A~krpvsSEelIKyAHrIS~~NaVsAPLTW~~G-DprR----PyPtd~EmR~GLlGk 172 (272)
T KOG4552|consen 119 ----------KEAEKRPVSSEELIKYAHRISKHNAVSAPLTWQMG-DPRR----PYPTDHEMRAGLLGK 172 (272)
T ss_pred ----------HHHhcCCCCHHHHHHHHHHhhhcccccCccccccC-CCCC----CCCchhHHhccCccc
Confidence 689999999999999999999866 999999999 9999 999999999999984
No 2
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=99.96 E-value=4.2e-29 Score=225.34 Aligned_cols=137 Identities=31% Similarity=0.387 Sum_probs=124.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCC
Q 044000 133 EIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRVKSEGGD 212 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KRlKs~~~~ 212 (420)
+++..|..+|.+|.+.+++|++|++++++|++|++|++++|..|++++++|++|++.|.++++ +.+++++.
T Consensus 2 ~~~~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~-----~~~~~~~~---- 72 (188)
T PF10018_consen 2 ELAEDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPD-----QADEKLKS---- 72 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhhcccc----
Confidence 688999999999999999999999999999999999999999999999999999999999993 23234333
Q ss_pred CCCCCCCCcccccccCCChHHHHHHHhhhhcccCC----------CCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhcccc
Q 044000 213 GNDDDSGSCSTTVESRLNLSDILSYAHRISYTTFA----------PPEFGAGQGPLRGALPPAPQEEQMRASQLYTFADL 282 (420)
Q Consensus 213 ~~~e~~~~~~~A~~~~V~~eDLIsYAHRIS~TTsA----------Pp~wqpGq~PlR~~~PPaPQEeeMRaG~L~~~Adl 282 (420)
+.++++++|+++|||+||||||++|+| |.+|.+| +|...+++|||+|++||+|+|+.++.+
T Consensus 73 --------~~~~~~~~v~~~eLL~YA~rISk~t~~p~~~~~~~~~P~~~~~~-~~~~~~~~PwP~Ed~mR~G~L~~~~~~ 143 (188)
T PF10018_consen 73 --------IPKAEKRPVDYEELLSYAHRISKFTSAPPTFPSGSIAPNNWQPG-PPSGDFFRPWPQEDQMRRGMLAQLQLL 143 (188)
T ss_pred --------ccccccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcCCcccccc-cccccccCCCCCHHHHHHhHHHhhhhh
Confidence 357789999999999999999999999 9999999 999999999999999999999999887
Q ss_pred cCCCc
Q 044000 283 DVGLP 287 (420)
Q Consensus 283 ~vg~p 287 (420)
..++.
T Consensus 144 ~~~~~ 148 (188)
T PF10018_consen 144 AEEGI 148 (188)
T ss_pred hhcCC
Confidence 76443
No 3
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=94.75 E-value=0.59 Score=42.80 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHHhhhhhhcccCCcchhhhhcccCcccccccCCCCCCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHH
Q 044000 73 LPRAQALLLQMASLASKLFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKEIIACFTSLQTQLFEAVAEL 152 (420)
Q Consensus 73 l~raq~ll~~ma~las~lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~keil~lf~s~QtqL~eAV~EL 152 (420)
.-|...|...+-||--+++||- +... . .| ......+++|-.+|.+.+ -.++++
T Consensus 71 ~d~~~eLkkL~~sll~nfleLl-------------------~~l~-~--~P-~~~~~ki~~i~~L~~Nmh----hllNey 123 (162)
T PF05983_consen 71 VDRKKELKKLNKSLLLNFLELL-------------------DILS-K--NP-SQYERKIEDIRLLFINMH----HLLNEY 123 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-------------------TSS------C-CCHHHHHHHHHHHHHHHH----HHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHH-------------------HHHH-h--CC-ccHHHHHHHHHHHHHHHH----HHHHHh
Confidence 5799999999999999999964 1111 0 11 344557777777776654 567889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 153 QEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 153 QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
+-||-++.-|.-|+++|+.|.+.|.++.+.+.+|+..|+
T Consensus 124 RPhQARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~le 162 (162)
T PF05983_consen 124 RPHQARETLIMMMEEQLEEKREEIEEIRKVCEKAREVLE 162 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999885
No 4
>PRK11637 AmiB activator; Provisional
Probab=88.95 E-value=2.9 Score=42.62 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+++|..++++|......|.++.++|++.+..|...+..
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666666666666666666665543
No 5
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=85.63 E-value=1.8 Score=47.51 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 150 AELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 150 ~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
.++++..+++++|++|+.||...|+.|....+++..-|..++.++++..+++.
T Consensus 76 ~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~ 128 (632)
T PF14817_consen 76 NEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH 128 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777777777777777777777777777766666555544
No 6
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=84.17 E-value=0.41 Score=34.90 Aligned_cols=18 Identities=50% Similarity=1.075 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 044000 347 PPPGWKPGDAVPLPPLDA 364 (420)
Q Consensus 347 pPpgWKpGDPi~lpp~~~ 364 (420)
-|.+|+|||.+-+||--+
T Consensus 12 tPanW~pGd~~ivpp~~s 29 (40)
T PF10417_consen 12 TPANWKPGDDVIVPPPVS 29 (40)
T ss_dssp BCTTTCTTSGEBE-TTSS
T ss_pred cCcCCCCCCCeEcCCCCC
Confidence 577888888888766543
No 7
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=83.53 E-value=5.8 Score=42.37 Aligned_cols=124 Identities=31% Similarity=0.437 Sum_probs=72.3
Q ss_pred hhccCC-CchHHHH---HHHHHHHhhhhhhcccC--CcchhhhhcccCcccccccCCCCCCCCCCCCCchhHHHHHHHHH
Q 044000 66 LLSLLP-PLPRAQA---LLLQMASLASKLFEVSP--NRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKEIIACFT 139 (420)
Q Consensus 66 ll~llp-pl~raq~---ll~~ma~las~lfe~s~--nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~keil~lf~ 139 (420)
-+.||- +--|.+- |+..-|=|..||.|++- +-.+-++.|-. .|+-|.+++. --+..--..+.+|++.|+
T Consensus 343 a~tlLe~~~~R~~fldeL~EL~aFL~qRl~El~~~~~~~l~~~~~~~-ap~~lq~~t~----~~i~~ml~~V~~ii~~Lt 417 (507)
T PF05600_consen 343 ALTLLENPETRNQFLDELLELEAFLKQRLYELSNEESSSLSFSQFQN-APSILQQQTA----ESIEEMLSAVEEIISQLT 417 (507)
T ss_pred hhhhcCCHhHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHhhh-ccHHHHhcCH----HHHHHHHHHHHHHHHHhc
Confidence 346777 8888774 56666889999999983 23333333332 3555554431 222334456677788888
Q ss_pred hhHHH-HH----------HHHHHHHHHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 140 SLQTQ-LF----------EAVAELQEILDL-----------QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 140 s~Qtq-L~----------eAV~ELQE~l~l-----------Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+.+++ |+ ..+..|+..++. +++++.++.|+.+....+..+.++=|+.+..++..|
T Consensus 418 ~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~I 494 (507)
T PF05600_consen 418 NPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADI 494 (507)
T ss_pred CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877 22 223333333222 444555666666666666666666666666666654
No 8
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=83.23 E-value=3.7 Score=37.13 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 147 EAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 147 eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.-+.|+|..++- +..+++|+.|++.||..|..+-++|.++.+.=..
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~ 126 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKS 126 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455444443 7778899999999999999999999999865443
No 9
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.07 E-value=7 Score=38.87 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDL-----QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~l-----Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+.+++.-+..+...|.+.+..|++...- +.+++++++++...+..|..+.++|.+.+.-|..+-
T Consensus 175 l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~ 243 (325)
T PF08317_consen 175 LDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELE 243 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555554432 555666666666666666655555555555554443
No 10
>PRK11637 AmiB activator; Provisional
Probab=81.38 E-value=13 Score=37.86 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
+++|..++++|...+..|..+.+++++.+..|+..-+
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666543
No 11
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=80.67 E-value=21 Score=33.21 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQ-EILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQ-E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
++++++.+++-..++|+-....+ |...++++++.++.+|..-=..+-.+.++-+.|..-|..+-.+|..|-.
T Consensus 4 i~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE 76 (159)
T PF05384_consen 4 IKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSE 76 (159)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCH
Confidence 57888888888899888776654 5556699999999999999999999999999999999999888887744
No 12
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=80.22 E-value=24 Score=28.73 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=48.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 134 IIACFTSLQTQLFEAVAELQEI----LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 134 il~lf~s~QtqL~eAV~ELQE~----l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
+...+..++.++.+...|-+.. ++....|.+|++.+...+..|..+.+++.+.+..++.+-+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777887777766665443 3336778889999999999999999999999999988753
No 13
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.52 E-value=31 Score=28.24 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 134 IIACFTSLQTQLFEAVAELQEILDLQDAKQKIARE-------IKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 134 il~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~E-------Ie~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
++.+|+.++++...||..+.. +|.+++.|+.+ .+..-....++...-...+.-|+.++
T Consensus 2 ~~E~l~~LE~ki~~aveti~~---Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 2 SLELLEQLEEKIQQAVETIAL---LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777776666655532 25555555554 55555555555555555555666655
No 14
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.24 E-value=13 Score=40.18 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=36.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 137 CFTSLQTQLFEAVAELQEILDL---------------QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~l---------------Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.+..+|+.+-+..+|+++..++ ....+++++.+.++|..|.+|+.||++.=-.|++
T Consensus 383 k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 4555555555444444443332 4555667888889999999999999886655554
No 15
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=75.91 E-value=24 Score=31.88 Aligned_cols=67 Identities=10% Similarity=0.233 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
+..++...+...-.++-+++...++|+ .++|+.+...+++..+...++.+++.+++..++++=+|..
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhL--sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~ 106 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHL--SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD 106 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345556666666667777777777774 5889999999999999999999999999888888766544
No 16
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=75.88 E-value=36 Score=32.41 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSD 199 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~ 199 (420)
++.+..|+++|......|...-.+.+.+...|+..+.+.+.
T Consensus 196 E~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 196 ERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 77777888888888888888888888888888887766553
No 17
>PRK14160 heat shock protein GrpE; Provisional
Probab=75.21 E-value=5 Score=38.79 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
.+..+++++...+..+..+.+++++....+-++..||.+|++
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666777777777777777777877866
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=74.90 E-value=25 Score=33.21 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=13.2
Q ss_pred CchhHHHHHHHHHhhHH
Q 044000 127 SPSTIKEIIACFTSLQT 143 (420)
Q Consensus 127 ~~~s~keil~lf~s~Qt 143 (420)
..-++.++|.+|.+++.
T Consensus 78 ~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKT 94 (161)
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 34678999999987764
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.45 E-value=29 Score=34.65 Aligned_cols=55 Identities=22% Similarity=0.394 Sum_probs=34.3
Q ss_pred HHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 138 FTSLQTQLFEAVAELQ----EILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 138 f~s~QtqL~eAV~ELQ----E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
|..+..+|.+...++. +..+++.++++++.+|++....+.++..++++++++++.
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555 445556677777777777777777777777777766653
No 20
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=73.61 E-value=37 Score=31.83 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAK-------DSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~k-------D~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
++++.+.+..+.-.-|...++.++..+.+++.+.+.+..+++. ..++.++.+.++++|+....+-.+|.
T Consensus 92 ~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e 167 (216)
T cd07627 92 TLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFE 167 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777776666666666555553 35666677777777766666665544
No 21
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=73.45 E-value=23 Score=34.60 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=50.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+.+=..++++|..++.+-..|-..-= =..|++|++.|...+..+......+++|....+.+|..
T Consensus 5 ~~~~~~~d~lq~~i~~as~~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~ 68 (207)
T PF05546_consen 5 KKLSFYMDSLQETIFTASQALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQ 68 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445777888887777666543322 57899999999999999999999999999999998854
No 22
>PHA01750 hypothetical protein
Probab=73.45 E-value=27 Score=29.28 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 128 PSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 128 ~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
++++=-|+++.-..-+.|-.||+|. .+++...|+.||++....+-+++.|.+|..+-++
T Consensus 15 aTtlFaIiqlYlKIKq~lkdAvkeI-----V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 15 ATTLFAIIQLYLKIKQALKDAVKEI-----VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3444455555555555566666665 3678888888888888888888888888776654
No 23
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=73.06 E-value=20 Score=40.06 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc-ccccccCCCCCCCCCCCCccc-ccccCCChHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR-PKRVKSEGGDGNDDDSGSCST-TVESRLNLSDILS 236 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa-~KRlKs~~~~~~~e~~~~~~~-A~~~~V~~eDLIs 236 (420)
+.||++||++=.+|=.++... .-||+||+.|..++.|-++-.. .=|+.+-...+..|+...... .++.+-+++|||+
T Consensus 377 ~AEIekmK~~Hak~m~k~k~~-s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~~~~ee~~~~~~~~~~k~k~~VDDIV~ 455 (669)
T PF08549_consen 377 NAEIEKMKARHAKRMAKFKRN-SLLKDAEKELRDAVEDPSETGPEIWRLEGRLDTPDEEDESPVEQSENKPKYKVDDIVA 455 (669)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHhccCCccccCccceeecccccCCccCCCCcccccCccccccHHHHHH
Confidence 666777776666555555443 4599999999998863221100 012222110011222222222 3345567999997
Q ss_pred HHhh
Q 044000 237 YAHR 240 (420)
Q Consensus 237 YAHR 240 (420)
=-.+
T Consensus 456 eVE~ 459 (669)
T PF08549_consen 456 EVEK 459 (669)
T ss_pred HHHH
Confidence 4433
No 24
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=72.57 E-value=23 Score=36.06 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=49.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 137 CFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.|..++-+|.+.-....+..++++++++|.+||..|-..+..|..+|+.-.....-+-
T Consensus 92 ml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq 149 (355)
T PF09766_consen 92 MLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQ 149 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5677778888888888888888999999999999999999999999997777766543
No 25
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.99 E-value=43 Score=31.97 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=42.8
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 128 PSTIKEIIACFTSLQTQLFEAVAEL-QEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 128 ~~s~keil~lf~s~QtqL~eAV~EL-QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
..++.+...-......+..+.+.++ .+..+++++++.|++|++.....+.++.+.+..-++.++.+-
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455444444 345556778888888888888888888777777777777764
No 26
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=71.99 E-value=19 Score=31.02 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 140 SLQTQLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 140 s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
..|..|..-+..+++.++. +++++++++.+.+.+..|..+-+++
T Consensus 73 ~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 73 HCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555554442 5566666666666666665554443
No 27
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=71.90 E-value=39 Score=28.50 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHhhhhcc
Q 044000 145 LFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKE---AERVLDILVDDYSD 199 (420)
Q Consensus 145 L~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKe---AE~~Ld~~VdD~~~ 199 (420)
+-.+..+...+..++.+|..|..+|......|..+..+|.. .+.+|+.+++.+..
T Consensus 66 ~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~~~e 123 (126)
T PF13863_consen 66 EKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVPKSPE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 34444455555666777777777777777777776665544 45667777654433
No 28
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.59 E-value=21 Score=37.98 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=38.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 136 ACFTSLQTQLFEAVAELQEIL----DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 136 ~lf~s~QtqL~eAV~ELQE~l----~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
.-|++.|.++.+..+++.+.. +++++|..++.+|...+..|.++++.|++.++-|+.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 556677777777766665543 3366666677777777777777777766666666554
No 29
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=70.92 E-value=25 Score=32.99 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=43.4
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 126 SSPSTIKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQK-----IAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 126 ~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~-----Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
.+.+++.+-+.+|..+.+.|.+..++|+++++. .++|.. =++||++.-..|..+..+++.-|.
T Consensus 78 ~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 78 IVQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667788889999999999999999888776 333322 356666666666666666665443
No 30
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=70.74 E-value=37 Score=33.12 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 155 ILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 155 ~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
..++|++|.+|+.+||+..-.|.++.++-++--..||+.+.
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34558999999999999999999999999998889998763
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.58 E-value=48 Score=31.80 Aligned_cols=64 Identities=11% Similarity=0.140 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEIL-DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l-~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
....++-.-++.++.+|.+...++..+. ++++++++.+.+|.+.++.-.++.++|..++..++.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333222 234444444445554555555555555554444443
No 32
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=69.49 E-value=46 Score=31.10 Aligned_cols=33 Identities=9% Similarity=0.293 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
+.++++++++|+.+-+.|..+..+|..-+..|.
T Consensus 76 ~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 76 RERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 33
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.37 E-value=44 Score=29.54 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 174 SAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 174 ~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
..|..+..++.++|..+..+-.+|
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~~ 168 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKRY 168 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544443
No 34
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=69.32 E-value=49 Score=29.99 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhHH
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEIL------DLQDAKQKIAREIKAKDSA 175 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l------~lQ~eIq~Lk~EIe~kD~~ 175 (420)
..++-+.|...|..|+..-.++.--. -.+..++.|+++|++.++.
T Consensus 48 ~~~~~~~L~~iq~~L~~l~~~la~~~~~~~~~i~~~~v~~Le~~i~~~~~~ 98 (163)
T PF01923_consen 48 EEELREILERIQNELFDLGAELATPEEDEEPEITEEDVQELEEEIDEYSEE 98 (163)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTTTSSSCS--HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHHHHHHHHHhc
Confidence 35666778888888888888776531 2367777788887777744
No 35
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=69.13 E-value=57 Score=27.73 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.++++.|+..|+..++.+..+.+++++.+.-|..++
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666677777777777777777777777776665
No 36
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=69.07 E-value=66 Score=26.71 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HH----------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 128 PSTIKEIIACFTSLQTQLFEAVAELQEILDL-QD----------AKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 128 ~~s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~----------eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
...+.+|+.+.... ++|...+.+|+..... .+ +.+.|.+++......|..+..++++++..|..++
T Consensus 25 ~~~vd~i~~ld~~~-r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 25 EEDVDEIIELDQER-RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777664433 4455555555554433 22 2445666788888888888888888888887765
No 37
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.94 E-value=54 Score=29.54 Aligned_cols=38 Identities=11% Similarity=0.262 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+.+++.++.+++...+.+.++.+.+++.+..++....+
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 166 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQ 166 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666665555554555544433
No 38
>PRK04654 sec-independent translocase; Provisional
Probab=67.92 E-value=55 Score=32.26 Aligned_cols=40 Identities=5% Similarity=0.262 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 153 QEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 153 QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++.+..+-+++.|++++++....|+++..+||+..+.|..
T Consensus 47 k~El~~El~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q 86 (214)
T PRK04654 47 KQELERELEAEELKRSLQDVQASLREAEDQLRNTQQQVEQ 86 (214)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444455555555554444443
No 39
>PRK14148 heat shock protein GrpE; Provisional
Probab=67.85 E-value=8 Score=36.93 Aligned_cols=36 Identities=6% Similarity=0.109 Sum_probs=16.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 167 REIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 167 ~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
.+++.....|..+..++++.+..+-++..|+.+|++
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rK 75 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRK 75 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444455555555654
No 40
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=67.09 E-value=8.2 Score=41.59 Aligned_cols=33 Identities=9% Similarity=0.318 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
++++|+|++|++||++..+++..+.+++.+.|+
T Consensus 27 ~~~~qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 27 IDLLQKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 344448888888888888777777777766554
No 41
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.00 E-value=46 Score=36.01 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=6.0
Q ss_pred hHHHHHHHhhh
Q 044000 231 LSDILSYAHRI 241 (420)
Q Consensus 231 ~eDLIsYAHRI 241 (420)
....|.||.++
T Consensus 478 ~~~~~~~~~~~ 488 (650)
T TIGR03185 478 LERAITIADKA 488 (650)
T ss_pred HHHHHHHHHHH
Confidence 44555555554
No 42
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=66.86 E-value=46 Score=28.08 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
++++.+|+.-+...|..+.++..|+|
T Consensus 72 e~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 72 EEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444443
No 43
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.79 E-value=40 Score=34.11 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEILDL-----QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l~l-----Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.+++--+..+...|...+..|+...+- +.+..+++.+|.+.+..|..+.++|.+.+..|..
T Consensus 171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~ 236 (312)
T smart00787 171 NSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQE 236 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433332 3334444444444444444444444444444433
No 44
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=66.44 E-value=50 Score=35.31 Aligned_cols=68 Identities=24% Similarity=0.253 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQ-KIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq-~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
++++|+.+-++.+..||..|-.+|+.-.+. ++.=. -=++-+..|...+..++.||.+-++.|...|..
T Consensus 2 ~~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~v~~ 71 (428)
T PF00846_consen 2 STLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADRVAA 71 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999988877654332 11111 134557788889999999999999999998854
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.40 E-value=36 Score=32.60 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+....+++++...+..|.++.++.++.++.|+.+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555444443
No 46
>PRK11519 tyrosine kinase; Provisional
Probab=66.29 E-value=29 Score=38.08 Aligned_cols=97 Identities=12% Similarity=0.187 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHhhhhhhcccCCcchhhhhcccCcccccccCCCCCCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 74 PRAQALLLQMASLASKLFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKEIIACFTSLQTQLFEAVAELQ 153 (420)
Q Consensus 74 ~raq~ll~~ma~las~lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~keil~lf~s~QtqL~eAV~ELQ 153 (420)
-.|++++.+++.|-+++.++.-..+-+-+.|. .. |+ .++++..-...+++++-+.-.++.
T Consensus 304 ~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~-------~~-----------hP--~v~~l~~~~~~L~~~~~~l~~~~~ 363 (719)
T PRK11519 304 LEAKAVLDSMVNIDAQLNELTFKEAEISKLYT-------KE-----------HP--AYRTLLEKRKALEDEKAKLNGRVT 363 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cc-----------Cc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888777776444433322211 11 11 244555555666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 154 EILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 154 E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
..-+.|++..+|+++++.....-..|.++++|++...
T Consensus 364 ~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~ 400 (719)
T PRK11519 364 AMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITE 400 (719)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 7777799999999999999999999999999987444
No 47
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.87 E-value=35 Score=34.27 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
+.+.+...+|.......+.....+|..|++.++.+-++..++..
T Consensus 255 ~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 255 QKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Confidence 55555556666666677777888888888888888776655533
No 48
>PF12302 DUF3629: Protein of unknown function (DUF3629); InterPro: IPR022079 This family of proteins is found in eukaryotes. Proteins in this family are typically between 256 and 292 amino acids in length.
Probab=65.09 E-value=20 Score=35.31 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+...|.++.|+ +|....|+.++|++|..|..|..++|+.|++-.-++-.-|...++
T Consensus 81 ~ds~evISALd--------kVRrieERRkiqnKMr~LMeeQ~~~DeriQEe~Dr~irkevlver 136 (253)
T PF12302_consen 81 TDSEEVISALD--------KVRRIEERRKIQNKMRALMEEQHEKDERIQEEKDRVIRKEVLVER 136 (253)
T ss_pred cchHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcc
Confidence 44567887764 678889999999999999999999999999888777666655544
No 49
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=64.62 E-value=39 Score=25.98 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHH
Q 044000 157 DLQDAKQKIAREIKAKDSAIL 177 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~ 177 (420)
+++++++++++|++.....|.
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 50
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=64.43 E-value=1.5e+02 Score=31.86 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 158 LQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+++++..|.+|+++|.+.+.++..++..--..|++-|
T Consensus 354 Lrkerd~L~keLeekkreleql~~q~~v~~saLdtCi 390 (442)
T PF06637_consen 354 LRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCI 390 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3778888999999999999999999999999999987
No 51
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.37 E-value=38 Score=37.25 Aligned_cols=98 Identities=14% Similarity=0.176 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHhhhhhhcccCCcchhhhhcccCcccccccCCCCCCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 74 PRAQALLLQMASLASKLFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKEIIACFTSLQTQLFEAVAELQ 153 (420)
Q Consensus 74 ~raq~ll~~ma~las~lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~keil~lf~s~QtqL~eAV~ELQ 153 (420)
-.|++++.+++.|-..+-++.-.++...+-| .+--+ .++++-....++++++.+...++.
T Consensus 304 ~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~-----------------~~~hP---~v~~l~~~~~~L~~~~~~l~~~~~ 363 (726)
T PRK09841 304 LEAKAVLEQIVNVDNQLNELTFREAEISQLY-----------------KKDHP---TYRALLEKRQTLEQERKRLNKRVS 363 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------cccCc---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666666655543333222222 11111 224444445666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 154 EILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 154 E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
+.-..|++..+|+++++.+...-..|-++.+|++....
T Consensus 364 ~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a 401 (726)
T PRK09841 364 AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS 401 (726)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77778999999999999999999999999998875544
No 52
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=64.01 E-value=88 Score=33.63 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=54.6
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHH-----HHHHHHHHHHHHHhhH----HHHHHHHHHHHHH
Q 044000 125 DSSPSTIKEIIACFTSLQTQLFEAVAELQE--------ILDL-----QDAKQKIAREIKAKDS----AILAFANKIKEAE 187 (420)
Q Consensus 125 ~~~~~s~keil~lf~s~QtqL~eAV~ELQE--------~l~l-----Q~eIq~Lk~EIe~kD~----~I~~lakkLKeAE 187 (420)
+.....+|+|.+-|..+--.+.|-++..|. .+++ .++..+|++.-|++++ .|.+++|||..+|
T Consensus 32 a~~~qk~~~~~D~lr~kilk~teqikie~~srd~n~~sylkl~~~ADk~Q~~rIkq~FEkkNqksahtiaqlqkkL~~y~ 111 (455)
T KOG3850|consen 32 AKDVQKLKEIKDSLRQKILKRTEQIKIEQSSRDGNVASYLKLVNNADKQQVARIKQVFEKKNQKSAHTIAQLQKKLEQYH 111 (455)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHhhccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 355677888888887776666666655554 4555 5667788888888875 5999999999999
Q ss_pred HHHHHHhhhhcccc
Q 044000 188 RVLDILVDDYSDYR 201 (420)
Q Consensus 188 ~~Ld~~VdD~~~yq 201 (420)
+-|..+ +.+. |+
T Consensus 112 ~rLkei-eng~-~r 123 (455)
T KOG3850|consen 112 RRLKEI-ENGE-SR 123 (455)
T ss_pred HHHHHH-hcCC-CC
Confidence 999886 3333 54
No 53
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=63.83 E-value=71 Score=29.16 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREI-------KAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EI-------e~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
.+|.+..+.+...-|-..+..+.+.+..++.+++.+.++ ..+...+..+..++++++...+.+=++
T Consensus 113 L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~ 185 (236)
T PF09325_consen 113 LREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDE 185 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333333332 223344455555555555544444333
No 54
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=63.82 E-value=31 Score=37.02 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=58.3
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 128 PSTIKEIIACFTSLQTQLFEAVAELQEILDL-----QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 128 ~~s~keil~lf~s~QtqL~eAV~ELQE~l~l-----Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
...-.+|+++++...--|.|+-..|.....- ++.|+++++.+.+.+++..++.+..+.++......|.+|
T Consensus 94 mk~W~~Iv~~yeK~n~~L~E~a~~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~l 168 (507)
T PF05600_consen 94 MKDWQEIVKLYEKDNLYLAEAAQILVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQL 168 (507)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788888888888899998888766553 888888899999999999999999999998888888765
No 55
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.81 E-value=98 Score=27.36 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+|..++.+|......+....+++..+...+..-+
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El 179 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEISERLKEEL 179 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555544444444444433
No 56
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=63.61 E-value=72 Score=25.18 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++++|..+...+..+..++..+||...=- -++.-...++|......+..+...|.+-...+..
T Consensus 20 s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~ 83 (87)
T PF08700_consen 20 SIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQS 83 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778877777777777777777654322 3444445555555555555565665555555544
No 57
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=63.46 E-value=65 Score=30.23 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
++.++.+..++.+|...+..+..+.+++.+.+.-++.+-
T Consensus 116 l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 116 LQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666666666666666666666555555544
No 58
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=63.43 E-value=91 Score=26.76 Aligned_cols=37 Identities=14% Similarity=0.356 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
++++.+|+-+|.+....+..+..+|+-..+.++.+++
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999984
No 59
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=63.14 E-value=1e+02 Score=27.18 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 163 QKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 163 q~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+.+++++.......+++.++++.++..+...-
T Consensus 83 ~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 83 EELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444433
No 60
>COG4550 Predicted membrane protein [Function unknown]
Probab=62.95 E-value=68 Score=29.20 Aligned_cols=63 Identities=13% Similarity=0.220 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 131 IKEIIACFTSLQTQ--LFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 131 ~keil~lf~s~Qtq--L~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
++.+++-+..+|++ +++.-.+.+..-+-+.+|+.|++||... ..|.+|.....+|-.+|.-+.
T Consensus 40 v~~~~~~iK~lQKeAVn~q~y~K~eAlkqses~i~~le~ei~~~-PlVeefr~sq~daNdLlQ~it 104 (120)
T COG4550 40 VKTKVDEIKKLQKEAVNLQHYDKEEALKQSESKIDELEAEIDHL-PLVEEFRTSQEDANDLLQYIT 104 (120)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHhHHHHHHHHH
Confidence 34444444444433 3333333333333367777788887665 578889999999988887765
No 61
>PRK14011 prefoldin subunit alpha; Provisional
Probab=62.87 E-value=44 Score=30.52 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIAREIKAK 172 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~k 172 (420)
-++.+++..|+.+=+.|-+...++.+.++. .+.+++|+++++.|
T Consensus 84 k~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k 128 (144)
T PRK14011 84 KDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKR 128 (144)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888777777766666555433 55555555554444
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=62.50 E-value=77 Score=31.45 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 150 AELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 150 ~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+.=.+..+++.+++.|+.+|...-..+....++|.+++..++..|..
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~ 153 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE 153 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456688888889999999999999999999999999887744
No 63
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=62.49 E-value=52 Score=37.12 Aligned_cols=104 Identities=24% Similarity=0.358 Sum_probs=57.7
Q ss_pred hhhhhhcccCCcchhhhhcccCcccccccCCCCCCCCCCCCC------chhHHHHHHHHHhhHHHHHHHHHHHHH----H
Q 044000 86 LASKLFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSS------PSTIKEIIACFTSLQTQLFEAVAELQE----I 155 (420)
Q Consensus 86 las~lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~------~~s~keil~lf~s~QtqL~eAV~ELQE----~ 155 (420)
|---||-||=.---|++...--++--+--. .|...+ ---+.|..+++.+.--+|.|.-.+-|| +
T Consensus 36 l~iil~~vs~~a~~~lt~~qdA~~~~~~~~------~p~~~s~~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI 109 (907)
T KOG2264|consen 36 LYIILYNVSFSAPSWLTTLQDALKQNIENL------DPYDASCSGYSIGRILREQKRILASVSLELTELEVKRQELNSEI 109 (907)
T ss_pred HHHHHhhcccccceeeecccccchhccccc------CcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334567777777778886655555433322 222221 112344444444444444443332222 2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
-++..+|++|+++|..+...+.++-.....|++.++.+++
T Consensus 110 ~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 110 EEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 2335666667777777777777777777778888887774
No 64
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=62.41 E-value=35 Score=29.38 Aligned_cols=29 Identities=7% Similarity=0.229 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
+++++.|+++++.....+..+..++..++
T Consensus 86 ~~~~~~l~~~~~~l~~~~~~L~~~~~~~~ 114 (118)
T cd04776 86 EKRRAELEQQRRDIDAALAELDAAEERCR 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 65
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=61.93 E-value=87 Score=26.56 Aligned_cols=75 Identities=11% Similarity=0.202 Sum_probs=51.9
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILDLQD--------AKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~--------eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
....+++.++-+...+..+...-..+......-+ ....|...+......|..|.+.+.+=+..|+..++...
T Consensus 31 d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~ 110 (213)
T cd00176 31 DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQ 110 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888877776433333333332222 34568888888899999999999988888888876555
Q ss_pred ccc
Q 044000 199 DYR 201 (420)
Q Consensus 199 ~yq 201 (420)
.|+
T Consensus 111 ~~~ 113 (213)
T cd00176 111 FFR 113 (213)
T ss_pred HHH
Confidence 443
No 66
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.83 E-value=97 Score=27.12 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
..+++.|+.+|...++....+.++|++.+.-|..++..+
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667777888888888888888888888888888888543
No 67
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=61.69 E-value=85 Score=25.39 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhhhhhcccCCc
Q 044000 75 RAQALLLQMASLASKLFEVSPNR 97 (420)
Q Consensus 75 raq~ll~~ma~las~lfe~s~nr 97 (420)
+++.++.++.....++|......
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~ 52 (105)
T PF12998_consen 30 KSQDLLEELDQQIQKFIKNHGSP 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTS-
T ss_pred hHHHHHHHHHHHHHHHHhhcccc
Confidence 35666666666666666655444
No 68
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=61.52 E-value=90 Score=29.22 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+.++..|+.+|+...+.|.+..+++.+..+.|..
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555554
No 69
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=61.36 E-value=52 Score=30.45 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 143 TQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 143 tqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
..|++++.+|.+.++.=++-+.+.+.|......+..+-.++++.-..|..+
T Consensus 5 ~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~ 55 (188)
T PF10018_consen 5 EDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEA 55 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999998888887777764
No 70
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.36 E-value=53 Score=33.25 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
++++++++..|++....+.++..++.+||+++
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 71
>PF14282 FlxA: FlxA-like protein
Probab=61.24 E-value=90 Score=26.77 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=37.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEI-----LDLQDAKQKIAREIKAKDSAILAFANKIKEAERV 189 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~-----l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~ 189 (420)
...+.-|...-..|.+.+.+|..- -..+.+++.|+.+|......|.++..+..+...-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444455555555541 2337788889999998888888888777666543
No 72
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=60.66 E-value=36 Score=36.21 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDL-----------QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~l-----------Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+.+++...|++...+|-++..+++...+- +.++..+++-.++....+.++.+.+++.+..|+.+
T Consensus 267 ~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l 341 (563)
T TIGR00634 267 SLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQL 341 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777664433 55555566655555556666666666666666654
No 73
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=60.46 E-value=60 Score=34.77 Aligned_cols=40 Identities=28% Similarity=0.481 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 163 QKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 163 q~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
.+|-.||++.+..+..|..+|.+|+..|..++....+.++
T Consensus 347 ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~ 386 (421)
T KOG2685|consen 347 YRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLER 386 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788889999999999999999999999976554443
No 74
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=60.31 E-value=79 Score=32.42 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 128 PSTIKEIIACFTSLQTQLFEAVAELQEILDL---QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 128 ~~s~keil~lf~s~QtqL~eAV~ELQE~l~l---Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
+.--++++.-+..+..+|-.+-+-+..+.++ ..++..++.+.++.-..|..++++..+++..+..+....+.+++
T Consensus 130 ~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rk 207 (294)
T COG1340 130 PEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRK 207 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666555555555444 47888888888888899999999999999999888776665544
No 75
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=60.22 E-value=94 Score=29.69 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=2.5
Q ss_pred HHHhhh
Q 044000 236 SYAHRI 241 (420)
Q Consensus 236 sYAHRI 241 (420)
.|...|
T Consensus 163 ~yg~~i 168 (251)
T PF11932_consen 163 EYGRTI 168 (251)
T ss_pred HhCCce
Confidence 344444
No 76
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=60.13 E-value=66 Score=32.58 Aligned_cols=71 Identities=20% Similarity=0.342 Sum_probs=45.3
Q ss_pred CchhHHHHHHHHHhhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 127 SPSTIKEIIACFTSLQ-------------TQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 127 ~~~s~keil~lf~s~Q-------------tqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+-..++++++.+.-+. .++.++++-+..+..+..+++..++.++.+...+..+..+|+++|+.+..+
T Consensus 147 S~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~ 226 (269)
T PF05278_consen 147 SESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEI 226 (269)
T ss_pred hHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666544443 234444444444555666777777777777777777888888888887776
Q ss_pred hhhh
Q 044000 194 VDDY 197 (420)
Q Consensus 194 VdD~ 197 (420)
-+..
T Consensus 227 ~~~i 230 (269)
T PF05278_consen 227 KERI 230 (269)
T ss_pred HHHH
Confidence 6443
No 77
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=60.02 E-value=37 Score=27.40 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
|+++.+.+.+.+++......|.++..++++++.+++.+
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577888888888888888888888888888888875
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.53 E-value=46 Score=32.98 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=27.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 133 EIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
++-..|...+.++..+.+.+. .++.+++.|+.+|......|+.+-.+++.++..|
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~---~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 28 EIRKALKKAKAELEALNKALE---ALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333332 2255555555555555555555555555555555
No 79
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=59.14 E-value=88 Score=26.38 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=22.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 134 IIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 134 il~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
|-..|++++..+-......+..- .++.+|...+..-..|+.+|..++.
T Consensus 13 L~~aid~LE~~v~~r~~~~~~~~-------~~e~ei~~l~~dr~rLa~eLD~~~a 60 (89)
T PF13747_consen 13 LEAAIDRLEKAVDRRLERDRKRD-------ELEEEIQRLDADRSRLAQELDQAEA 60 (89)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-------hHHHHHHHHHhhHHHHHHHHHhHHH
Confidence 33455555555555444444443 4444444444444444444444443
No 80
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.11 E-value=59 Score=32.80 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=14.6
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEI 155 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~ 155 (420)
.-+.++++.+-....|++|-..+..+.++
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~ 64 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEI 64 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555444444433
No 81
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.99 E-value=89 Score=31.57 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc--ccccccCCCCCCCCCCCCcccccccCCChHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR--PKRVKSEGGDGNDDDSGSCSTTVESRLNLSDILS 236 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa--~KRlKs~~~~~~~e~~~~~~~A~~~~V~~eDLIs 236 (420)
+.+|..+..++.+.+..|.+...+++..+..++.+=.+...-+. ++|.+++...+.. .+ .=...-+.=++.|+|+
T Consensus 58 ~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~--t~-Yidvil~SkSfsD~Is 134 (265)
T COG3883 58 DNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTA--TS-YIDVILNSKSFSDLIS 134 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--hH-HHHHHHccCcHHHHHH
Confidence 55555555555555555555555555555555443322221111 3566664211100 00 0011233345666666
Q ss_pred HHhhhhc
Q 044000 237 YAHRISY 243 (420)
Q Consensus 237 YAHRIS~ 243 (420)
-..-|+.
T Consensus 135 RvtAi~~ 141 (265)
T COG3883 135 RVTAISV 141 (265)
T ss_pred HHHHHHH
Confidence 5555543
No 82
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.70 E-value=74 Score=25.62 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+.+++.++.+|+.....+..+.++|++.+..|..
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554443
No 83
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=58.60 E-value=65 Score=25.67 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
++++..|++-....+..|..++++|++-+..+.
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777777777777665443
No 84
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=58.54 E-value=1.2e+02 Score=27.71 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDL-----------QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~l-----------Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
.++|++|.-=+.++.++..+..+|+..... +++++.++.||++-...+....+++.++...+-.-++.+
T Consensus 121 ~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf 200 (236)
T PF09325_consen 121 ESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERF 200 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777775555555555555555444322 467788888888888888888888888877777666554
Q ss_pred c
Q 044000 198 S 198 (420)
Q Consensus 198 ~ 198 (420)
+
T Consensus 201 ~ 201 (236)
T PF09325_consen 201 E 201 (236)
T ss_pred H
Confidence 4
No 85
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=58.04 E-value=70 Score=33.83 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 142 QTQLFEAVAELQ-EILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 142 QtqL~eAV~ELQ-E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
+.+|-+.+..+. |.+.+|-+.+.+.+|+.+|.+.-+.+-+.|+|+-+.-..+.++|
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ey 185 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEY 185 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444443 34555888899999999999999999999999999888887663
No 86
>PRK14145 heat shock protein GrpE; Provisional
Probab=57.76 E-value=10 Score=36.26 Aligned_cols=10 Identities=30% Similarity=0.405 Sum_probs=5.7
Q ss_pred CCCCCCCCCC
Q 044000 348 PPGWKPGDAV 357 (420)
Q Consensus 348 PpgWKpGDPi 357 (420)
=.||+-||-|
T Consensus 177 qkGY~l~dRV 186 (196)
T PRK14145 177 QKGYYLKDKV 186 (196)
T ss_pred eCCcEeCCEe
Confidence 3466666654
No 87
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=57.71 E-value=57 Score=33.54 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
+.+.+..+|++|++........+.+++++++.
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666666666653
No 88
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=57.35 E-value=27 Score=29.49 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++++|.+||++--..|..++.+||+.+.-...
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E 33 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTE 33 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666677666666655443
No 89
>PRK09039 hypothetical protein; Validated
Probab=57.01 E-value=51 Score=33.53 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=12.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 167 REIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 167 ~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.+|..-.....+...++.+-++.|..++
T Consensus 158 ~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 158 AALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444455555555554
No 90
>PF13864 Enkurin: Calmodulin-binding
Probab=56.67 E-value=51 Score=27.60 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=45.1
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 044000 126 SSPSTIKEIIACFTSLQTQLFEAVAELQE------ILDLQDAKQKIAREIKAKDSAILAFAN 181 (420)
Q Consensus 126 ~~~~s~keil~lf~s~QtqL~eAV~ELQE------~l~lQ~eIq~Lk~EIe~kD~~I~~lak 181 (420)
.---+-.|-..+|+.+.....+...+|+. ++...+.++.|++++...|..|.-|.+
T Consensus 34 ~~~l~eeER~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 34 MRLLSEEERQELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445678888999999999999999885 466688889999999999998887754
No 91
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=56.29 E-value=1.2e+02 Score=29.65 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKA-----KDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~-----kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
.+++|-++++.+...-+.+.++-++..+..++.+++.+....+ |...|.++...++++|.....+..+|.
T Consensus 109 e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe 183 (234)
T cd07664 109 ELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFE 183 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888777777777777777666655554444322 234566666666666666666655544
No 92
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=56.05 E-value=56 Score=32.29 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 126 SSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 126 ~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
.-...+.+|-.+|-++.- ..+|++=||-++--|--+++.|+.+...+..|.+.+++++..|+..
T Consensus 103 ~~e~Kvedi~tifvnlHH----LiNeyRPhQaResLi~lmE~Qi~~~~~~ve~~kk~~~~~~e~l~d~ 166 (223)
T KOG0570|consen 103 MREEKVEDIRTIFVNLHH----LINEYRPHQARESLIMLMERQIEQRSDIVEDFKKHLRQVREVLDDQ 166 (223)
T ss_pred hHHHHHHHHHHHHHHHHH----HHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777776553 4578888888888888899999999999999999999999888764
No 93
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.02 E-value=64 Score=36.23 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=26.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 165 IAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 165 Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
+.+||+.+|..|..|.++|++.....+.+=...+
T Consensus 472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 472 KDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888899999999999988887777654433
No 94
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.89 E-value=1.2e+02 Score=27.23 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 163 QKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 163 q~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
+..+.++..-|..+.++.+++++.+
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555
No 95
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=55.18 E-value=45 Score=36.73 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
.++++++.+..||+.|++.+.++.+.+
T Consensus 451 ~~r~~~k~~~~e~~~Kee~~~qL~~e~ 477 (594)
T PF05667_consen 451 ELREEIKEIEEEIRQKEELYKQLVKEL 477 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555544444433
No 96
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=55.01 E-value=95 Score=31.93 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=34.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 150 AELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 150 ~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.+|+.++.. .++|..++++|+.....|.+...-||-|+.-|++
T Consensus 261 ~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~ 304 (384)
T PF03148_consen 261 NELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLEN 304 (384)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 344433332 8889999999999999999999999999999887
No 97
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=54.47 E-value=72 Score=27.88 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=40.3
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 126 SSPSTIKEIIACFTSLQTQLFEAVAELQEILDL--------QDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 126 ~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l--------Q~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
.+++...|+++..+.+|..=...--|..-.+.. +..|+.|+.-|-.|+..|..+.++|
T Consensus 28 AaAsAA~EAMaMI~RLQ~EKAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~l~~rE~e~~~Le~el 93 (94)
T PF04576_consen 28 AAASAASEAMAMILRLQEEKAAVEMEARQYQRMAEEKAEYDQEAIESLKDILYKREKEIQSLEAEL 93 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778899999999998754444444333333 6677777777778887777776665
No 98
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.37 E-value=87 Score=35.22 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
+.+|..|+++++++++.|.+|.++|.+.+
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555
No 99
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=54.22 E-value=80 Score=25.18 Aligned_cols=22 Identities=5% Similarity=0.185 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH
Q 044000 162 KQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakkL 183 (420)
|+.|.+.|-.....|..+.++|
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333333333333333333
No 100
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=53.78 E-value=1.4e+02 Score=26.62 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=43.7
Q ss_pred HHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 133 EIIACFTSLQTQLFEAVAEL---QEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~EL---QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.+|++-+.+.+=++++..+| +=-+.++.++..|+.|+..||..|+.+-.++..-+++|..+-
T Consensus 12 ~FlD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~ 76 (106)
T PF11594_consen 12 SFLDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQ 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444 222345889999999999999999999999999998877764
No 101
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=53.76 E-value=64 Score=25.95 Aligned_cols=37 Identities=41% Similarity=0.454 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+.++.|..|+..--..-..+..+|++++.--..+..+
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~e 47 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQE 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666777777777655555443
No 102
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=53.59 E-value=1.5e+02 Score=28.01 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=54.8
Q ss_pred CchhHHHHHHHHHhhHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044000 127 SPSTIKEIIACFTSLQTQ---LFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDY 200 (420)
Q Consensus 127 ~~~s~keil~lf~s~Qtq---L~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~y 200 (420)
......+++.-|+.-|.. |.+...-|++.++- ...-++|..+|...-..+..+..+|..-|.....--.-|++|
T Consensus 58 ~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y 135 (182)
T PF15035_consen 58 HSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQY 135 (182)
T ss_pred CcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346788888888777665 88888889988887 566777888888888888888888877776666544444444
No 103
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.16 E-value=83 Score=28.78 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=21.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 168 EIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 168 EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
+....++.|.++-++|+.++..++++-.+.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888888888888888775443
No 104
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=52.99 E-value=40 Score=32.14 Aligned_cols=8 Identities=0% Similarity=0.223 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 044000 180 ANKIKEAE 187 (420)
Q Consensus 180 akkLKeAE 187 (420)
.++|.+.+
T Consensus 168 e~~L~~v~ 175 (262)
T PF14257_consen 168 ERELSRVR 175 (262)
T ss_pred HHHHHHHH
Confidence 33333333
No 105
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=52.68 E-value=44 Score=37.39 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=48.6
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 126 SSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 126 ~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
+.--+.+|...+...++..+..+++||+++ |-.+..+.+||.+++..|..+.++|..-..
T Consensus 14 ~g~~t~~~~~~~v~~l~~~v~~kd~elr~r---qt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 14 TGMGTARELQNLVPQLEEAVQRKDAELRQR---QTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred cCccchHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 445577888888888888888888888665 888899999999999999999997765444
No 106
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=52.65 E-value=28 Score=29.57 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
+++++.|+++|++.......+.+.+
T Consensus 85 ~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 85 EDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 107
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=52.54 E-value=56 Score=35.43 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=41.8
Q ss_pred CcchhhhhcccCcccccccCCCCCCCCCCCCCchhHHHHH-HHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 044000 96 NRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKEII-ACFTSLQTQLFEAVAELQ-EILDLQDAKQKIAREIKAKD 173 (420)
Q Consensus 96 nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~keil-~lf~s~QtqL~eAV~ELQ-E~l~lQ~eIq~Lk~EIe~kD 173 (420)
-..||++...+..= + ..+...++++. ...++ ..|+.+..+ .|+++.| ..-++|+++++|++|.+..-
T Consensus 28 ~g~~~~~~~~~~~~-----~---~~~~~~~~~~~-~~~vV~~~FddkVnq--SALteqQ~kasELEKqLaaLrqElq~~s 96 (475)
T PRK13729 28 GGALYLSDVDMSGN-----G---EAVAEQEPVPD-MTGVVDTTFDDKVRQ--HATTEMQVTAAQMQKQYEEIRRELDVLN 96 (475)
T ss_pred hceEEEeccccccc-----c---ccccccCCCCC-ccceecchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899987765421 1 11112222332 33333 366665443 2333333 22233666666666666444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044000 174 SAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 174 ~~I~~lakkLKeAE~~Ld~~ 193 (420)
....++..+|++-|..++.+
T Consensus 97 aq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 44555555565555555554
No 108
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=52.33 E-value=64 Score=33.64 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=20.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 164 KIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 164 ~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.|.+|+.+..+.|..+.+++++.+..|...+
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666654
No 109
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=52.30 E-value=42 Score=31.01 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
+..|..|+.++..+...|.++...|++=+..++.+-|++.
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666666665543
No 110
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=52.04 E-value=1.4e+02 Score=24.89 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=15.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEIL 156 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l 156 (420)
++++..|+++++.|.+...+.+.++
T Consensus 21 ~~~l~~ln~tn~~L~~~n~~s~~rl 45 (88)
T PF10241_consen 21 AQTLGRLNKTNEELLNLNDLSQQRL 45 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777766666665443
No 111
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=51.83 E-value=1.5e+02 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 158 LQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
++++|+-|+.+++.-|..+.....+|+++..-.+.+
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~ 113 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHF 113 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 356666666666666666666666666666555553
No 112
>COG3679 Regulatory protein involved in competence development and sporulation [Replication, recombination and repair; Signal transduction mechanisms]
Probab=51.79 E-value=66 Score=28.99 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
..+++.++++|+..+. ...+++||+.|..++++-+
T Consensus 67 ~~~~q~~~~~i~~~e~-----v~~f~eaE~~L~~~l~el~ 101 (118)
T COG3679 67 VTKAQELKQEIQLNEK-----VSAFMEAEQALSSLLDELN 101 (118)
T ss_pred HHHHHHHHHHHhhcHH-----HHHHHHHHHHHHHHHHHHH
Confidence 4477788888876654 4578999999999987754
No 113
>PRK14143 heat shock protein GrpE; Provisional
Probab=51.55 E-value=18 Score=35.54 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCC
Q 044000 347 PPPGWKPGDAVPL 359 (420)
Q Consensus 347 pPpgWKpGDPi~l 359 (420)
.=.||+-||-|-=
T Consensus 202 ~qkGY~l~~RVLR 214 (238)
T PRK14143 202 LQRGYHLGGRVLR 214 (238)
T ss_pred eeCCceeCCEecc
Confidence 3457888887653
No 114
>PHA02562 46 endonuclease subunit; Provisional
Probab=51.51 E-value=1.3e+02 Score=31.07 Aligned_cols=11 Identities=27% Similarity=0.292 Sum_probs=5.7
Q ss_pred ccCcccccccC
Q 044000 105 RGSLPTFLSSQ 115 (420)
Q Consensus 105 rgslptfl~s~ 115 (420)
.+..|+.-.+-
T Consensus 284 ~~~Cp~C~~~~ 294 (562)
T PHA02562 284 GGVCPTCTQQI 294 (562)
T ss_pred CCCCCCCCCcC
Confidence 45666654433
No 115
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.43 E-value=64 Score=31.08 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
+.+.+.++|++.|++.-..+-.++++||++-.++-.+|+
T Consensus 129 ~~~~Everi~~~ieE~v~eLe~~a~~lke~~~~i~~l~~ 167 (181)
T COG4345 129 DAMEEVERIEKTIEELVSELESLANKLKEVTDVINSLVE 167 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 338889999999999999999999999999999998884
No 116
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=51.33 E-value=76 Score=31.04 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
+.++..++.+++.....+.....+|+.++.
T Consensus 150 ~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 150 LAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 117
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=51.32 E-value=1.1e+02 Score=29.20 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=44.3
Q ss_pred hcccCcccccccCCCC-----------CCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044000 103 AFRGSLPTFLSSQAQS-----------QPPPPIDSSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKA 171 (420)
Q Consensus 103 ~~rgslptfl~s~~~~-----------~~~~p~~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~ 171 (420)
.-.|-+|.++++.--- .+=-....=+++++|+-..++....+..+.+++-.+. +++-|+.-++..++
T Consensus 80 ~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~~~C~N~C~e~~~~~~~~~~~~~~~~~~G~~~--r~~~i~~a~~~~~e 157 (176)
T PF12999_consen 80 ENKGHIPRYIPSSRVNDGICDYDICCDGSDESGGKCPNTCAELGKEYREELEEEEEIYKEGLKI--RQELIEEAKKKREE 157 (176)
T ss_pred ccCCCCCceeehhhhcCCcCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3457777777765210 1111234568999999988877766666665544222 23333333333444
Q ss_pred hhHHHHHHHHHHHHHH
Q 044000 172 KDSAILAFANKIKEAE 187 (420)
Q Consensus 172 kD~~I~~lakkLKeAE 187 (420)
....+.++.++|++.+
T Consensus 158 ~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 158 LEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444555555555444
No 118
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=51.18 E-value=73 Score=30.62 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=17.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044000 164 KIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYR 201 (420)
Q Consensus 164 ~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yq 201 (420)
.++.++......|.....+++.++..|..+-.+|.+|+
T Consensus 98 ~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~ 135 (334)
T TIGR00998 98 QLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRV 135 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333334444444444444555554444444444443
No 119
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=50.73 E-value=52 Score=26.18 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
++++++.+++..+++.++.+..+.+.....+..+.++.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~ 40 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLN 40 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555554444444444444444
No 120
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.26 E-value=63 Score=38.23 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHhhhhccccc
Q 044000 128 PSTIKEIIACFTSLQTQ--LFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVL---DILVDDYSDYRR 202 (420)
Q Consensus 128 ~~s~keil~lf~s~Qtq--L~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L---d~~VdD~~~yqa 202 (420)
...++.+-.-|+.++.. |++.-.+..++.+++++++.+..+|++-...|.+..+.+|.|+... +.-.-|+..+|.
T Consensus 707 ~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re 786 (1174)
T KOG0933|consen 707 SQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRE 786 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH
Confidence 34455555545444444 5666667777888889999999999999999999999999988765 444445444433
Q ss_pred cccccc
Q 044000 203 PKRVKS 208 (420)
Q Consensus 203 ~KRlKs 208 (420)
+|+|.
T Consensus 787 -~rlkd 791 (1174)
T KOG0933|consen 787 -RRLKD 791 (1174)
T ss_pred -hHHHH
Confidence 44443
No 121
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=50.19 E-value=1.1e+02 Score=28.03 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKE 185 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKe 185 (420)
..++++|++|+++++..+..+.+|.+.
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555443
No 122
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=50.17 E-value=74 Score=29.13 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAIL 177 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~ 177 (420)
.+.++-.-++++.+||.++.+.+....+....++.|+++|+.......
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 344556678888889988888877665532234444444444433333
No 123
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=50.00 E-value=1.2e+02 Score=26.19 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 162 KQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
++.|++++...+..+..+.+.++..+.
T Consensus 82 ~~~l~~~~~~l~~~~~~l~~~~~~L~~ 108 (118)
T cd04776 82 LEKIEKRRAELEQQRRDIDAALAELDA 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 124
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.96 E-value=2e+02 Score=26.12 Aligned_cols=62 Identities=15% Similarity=0.305 Sum_probs=38.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEILDLQDAKQK-IAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~-Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
.++-+.|....+.|.+.+..+-..++.+.++.+ ++.|+.+--..+.++-..++..++...++
T Consensus 53 ~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 53 EQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344445555666677777666666666666554 66666666666666666666666665554
No 125
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.74 E-value=75 Score=33.09 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 162 KQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.++|+.++.+..+.|..+.+++++.+..|...+
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKL 103 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666677776666666654
No 126
>PF14772 NYD-SP28: Sperm tail
Probab=49.04 E-value=1.6e+02 Score=24.67 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+...+...+-|..||..|..|...|++++.--...
T Consensus 61 e~q~~~~e~ii~~Kd~lI~~L~~eL~~~deqy~~~ 95 (104)
T PF14772_consen 61 EEQKQACERIIDRKDALIKELQQELKEADEQYVKA 95 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566678889999999999999999999655444
No 127
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=49.00 E-value=2.1e+02 Score=26.08 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=41.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEI-LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~-l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
..+...|++.+.++-+++.-+-.. ..++..++.++.|++........+.++.+.-+..|...+.
T Consensus 25 e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~ 89 (162)
T PF05565_consen 25 EAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAME 89 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666665544333 2336677777777777777777777777777777777663
No 128
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=48.59 E-value=1.8e+02 Score=27.88 Aligned_cols=57 Identities=12% Similarity=0.280 Sum_probs=37.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 137 CFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
..+..-..+.+....++...+++++.++|++|+.+....+.++. .|++--..|..++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~-~l~~en~~L~~lL 109 (276)
T PRK13922 53 VVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQELE-QLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 33333444556666677777888888899999888888777664 3444444555555
No 129
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=48.31 E-value=1.1e+02 Score=29.14 Aligned_cols=62 Identities=13% Similarity=0.260 Sum_probs=37.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 133 EIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
.+..=|.....+|...|.+.+ .+++.+|.+|.+||+..|.... -+|.||.==..|++-+++|
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~--~eL~~eI~~L~~~i~~le~~~~-~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTK--NELEDEIKQLEKEIQRLEEIQS-KSKTLRNKANWLESELERF 163 (171)
T ss_dssp --------HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 555566677777888887764 4568899999999998886554 3566665555555555554
No 130
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=48.30 E-value=90 Score=23.94 Aligned_cols=35 Identities=11% Similarity=0.196 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 044000 152 LQEILDLQDAKQKIAREIKAKDSAILAFANKIKEA 186 (420)
Q Consensus 152 LQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeA 186 (420)
+....++++++++|+++++.....+..+..+++..
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556777777777777777777776666665
No 131
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=48.29 E-value=1.1e+02 Score=30.14 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
++.+++|++++......+-.+-.+-+++...|+.++-+
T Consensus 164 ERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~ 201 (205)
T KOG1003|consen 164 ERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQE 201 (205)
T ss_pred HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888888888887643
No 132
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=48.27 E-value=1.6e+02 Score=29.34 Aligned_cols=94 Identities=26% Similarity=0.227 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------------HHHHHHHHHHHHHhhhh
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFA------------NKIKEAERVLDILVDDY 197 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~la------------kkLKeAE~~Ld~~VdD~ 197 (420)
.+.+++++++++.-++++...+|.=|++.|+-|+-|++.. -+...+|+ +++.+-|++|.-+|.+.
T Consensus 79 ~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~---~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~ 155 (228)
T KOG2659|consen 79 QIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGK---TEEALEFAQTKLAPFAEENPKKMEELERTLALLVFEL 155 (228)
T ss_pred cHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCC
Confidence 4677888999999999999999999999999998887654 22222332 45667788888888321
Q ss_pred cccccccccccCCCCCCCCCCCCcccccccCCChHHHHHHHhhh---hcccCCCCCCCCC
Q 044000 198 SDYRRPKRVKSEGGDGNDDDSGSCSTTVESRLNLSDILSYAHRI---SYTTFAPPEFGAG 254 (420)
Q Consensus 198 ~~yqa~KRlKs~~~~~~~e~~~~~~~A~~~~V~~eDLIsYAHRI---S~TTsAPp~wqpG 254 (420)
. ....+.+++.|-+|. +.-|.|=+.++.+
T Consensus 156 ~----------------------------~~sp~~~l~~~s~R~kvA~~vN~aiL~~~~~ 187 (228)
T KOG2659|consen 156 S----------------------------QESPSAELLSQSLRQKVASEVNSAILASQEH 187 (228)
T ss_pred c----------------------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 123467788888876 3455665555544
No 133
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=48.14 E-value=98 Score=28.56 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDY 200 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~y 200 (420)
-..+++|++.++|+++-++.-.++.++=+++|+.=+.....+++|
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f 113 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRF 113 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchh
Confidence 345888888888888888888888888888888888776554433
No 134
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=47.58 E-value=90 Score=32.10 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+++.+.-++.+..+|...++++.+.+.... +.++.+++.+..+..+.+++++++..++.
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~---k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP---KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555544432211 33444444555555566666666665544
No 135
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=47.56 E-value=1e+02 Score=25.90 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 137 CFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
-++.|=..|..+|..+++- ...+..|...++.....+..+.+++.+...+|.
T Consensus 15 ~vd~KVdaLq~~V~~l~~~---~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 15 AVDDKVDALQTQVDDLESN---LPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333333344444444333 345555666777777777777777777776665
No 136
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=47.47 E-value=1.9e+02 Score=27.41 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=10.8
Q ss_pred hHHHHHHHhhhhc--ccCCC
Q 044000 231 LSDILSYAHRISY--TTFAP 248 (420)
Q Consensus 231 ~eDLIsYAHRIS~--TTsAP 248 (420)
.+..|.|++++.- -+|.|
T Consensus 202 le~~i~~q~~~~~~We~~~p 221 (224)
T cd07623 202 LESLLNTQQQLIKYWEAFLP 221 (224)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 5666777777742 44544
No 137
>PTZ00421 coronin; Provisional
Probab=47.40 E-value=51 Score=34.97 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=28.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 138 FTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 138 f~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
+..++.+|.+...+++.. |.+|+++++++++|+..+.+...+++
T Consensus 448 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (493)
T PTZ00421 448 LDERLGRLQALSEKLRTQ---HEEIKRCREALQKKESIVMETLEKIQ 491 (493)
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555555333 88888888888888887776655543
No 138
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=47.23 E-value=1.4e+02 Score=26.50 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
|.+|+=++|--++..+.+.+...++..++..+++.++..+ ....+..+++..+..+...|+...
T Consensus 4 Tl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~ 67 (120)
T PF09969_consen 4 TLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSL-----EVNGLEAELEELEARLRELIDEIE 67 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-----hHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555555555444444444444444433332 344455556666666666665443
No 139
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=47.23 E-value=52 Score=33.22 Aligned_cols=135 Identities=18% Similarity=0.244 Sum_probs=67.3
Q ss_pred hhccCCCchHHHH--------HHHHHHHhhhhhhcccCCcchhhhhcccCcccccccCCCCCCCCCCCCCchhHHHHHH-
Q 044000 66 LLSLLPPLPRAQA--------LLLQMASLASKLFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKEIIA- 136 (420)
Q Consensus 66 ll~llppl~raq~--------ll~~ma~las~lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~keil~- 136 (420)
..+.-|-+-|--. ++.-+..++.-...++-.=+.|=.. .+. .+++|..
T Consensus 48 ~~~~~pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~--------------------edd---dl~DIsDk 104 (271)
T PF13805_consen 48 AGSQQPELSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQ--------------------EDD---DLSDISDK 104 (271)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------------------S-H---HHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------CCc---hHHHHHHH
Confidence 4566666666432 3344556666666666666666322 122 3444433
Q ss_pred ------HHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHH
Q 044000 137 ------CFTSLQTQLFEAVAELQEILDL-----------QDAKQKIAREIKAK------DSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 137 ------lf~s~QtqL~eAV~ELQE~l~l-----------Q~eIq~Lk~EIe~k------D~~I~~lakkLKeAE~~Ld~~ 193 (420)
-+-..+.++......++.++|- .+.+++|..+|... ...|..+..+|..||....-.
T Consensus 105 lgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lva 184 (271)
T PF13805_consen 105 LGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVA 184 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHH
Confidence 3345566677778888777765 22233344443322 235777777887777654332
Q ss_pred hhhhcccccccccccCCCCCCCCCCCCcccccccCCChHHHHHHHhhh
Q 044000 194 VDDYSDYRRPKRVKSEGGDGNDDDSGSCSTTVESRLNLSDILSYAHRI 241 (420)
Q Consensus 194 VdD~~~yqa~KRlKs~~~~~~~e~~~~~~~A~~~~V~~eDLIsYAHRI 241 (420)
=.+..+|.+ +++|.. -.+.+.-++.||.++
T Consensus 185 EAqL~n~kR-~~lKEa-----------------~~~~f~Al~E~aEK~ 214 (271)
T PF13805_consen 185 EAQLSNIKR-QKLKEA-----------------YSLKFDALIERAEKQ 214 (271)
T ss_dssp HHHHHHHHH-HHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhH-HHHHHH-----------------HHHHHHHHHHHHHHH
Confidence 222333433 344443 234466666666665
No 140
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.20 E-value=1.1e+02 Score=30.44 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=9.9
Q ss_pred HHHhhhhhhcccCCcchhhh
Q 044000 83 MASLASKLFEVSPNRSLWIS 102 (420)
Q Consensus 83 ma~las~lfe~s~nr~~w~~ 102 (420)
...|...+=|+++--+.|.+
T Consensus 81 ~~~l~~d~~e~~~~f~~ws~ 100 (240)
T cd07667 81 EIEYLVELREYGPVYSTWSG 100 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555543
No 141
>PRK01919 tatB sec-independent translocase; Provisional
Probab=47.20 E-value=2.3e+02 Score=27.21 Aligned_cols=64 Identities=8% Similarity=0.034 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.=++.+-+-..-.++-..+.++++.++.+-+++.|++..++.+....++.+.+++.-..++.-+
T Consensus 25 LP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~e~dElrk~~~~~e~~~~~v~~si~~~~~~~~~~~ 88 (169)
T PRK01919 25 LPRVARTAGALFGRAQRYINDVKAEVSREIELDELRKMKTDFESAARDVENTIHDNLSEHESDL 88 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344444444445555555566655555545555555444444555555555555444444433
No 142
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.01 E-value=1.7e+02 Score=32.97 Aligned_cols=9 Identities=11% Similarity=0.231 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 044000 131 IKEIIACFT 139 (420)
Q Consensus 131 ~keil~lf~ 139 (420)
.+|.+++|.
T Consensus 534 ~~E~l~lL~ 542 (717)
T PF10168_consen 534 PQECLELLS 542 (717)
T ss_pred CHHHHHHHH
Confidence 445555444
No 143
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=46.70 E-value=1.7e+02 Score=24.45 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH------HHHHHHHHHHHHhhhhc
Q 044000 159 QDAKQKIAREIKAKDSAILAFAN------KIKEAERVLDILVDDYS 198 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lak------kLKeAE~~Ld~~VdD~~ 198 (420)
.++..+.+.+.+..-..+..+.+ +|.+++..+..+-++|.
T Consensus 100 ~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~ 145 (194)
T cd07307 100 RKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433 56677777777666655
No 144
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=46.63 E-value=1.5e+02 Score=32.21 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 154 EILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 154 E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+++.+-..|..+..+|..||+.|+.-..+|++.|..++.
T Consensus 232 ~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~ 270 (499)
T COG4372 232 AIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQAR 270 (499)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777788888888888888888887766544
No 145
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=46.50 E-value=1e+02 Score=26.77 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAEL 152 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~EL 152 (420)
++.|++.+|+.+-..|-+.++++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l 113 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKL 113 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788877777766666665555
No 146
>PRK09039 hypothetical protein; Validated
Probab=46.47 E-value=1.1e+02 Score=31.26 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=7.9
Q ss_pred HHhhhhhhhcccccCCCchh
Q 044000 270 QMRASQLYTFADLDVGLPKV 289 (420)
Q Consensus 270 eMRaG~L~~~Adl~vg~pk~ 289 (420)
..|+--..++=. .-|+|..
T Consensus 290 ~~RA~aV~~~Li-~~Gi~~~ 308 (343)
T PRK09039 290 SARAISVVKFLI-ALGVPAD 308 (343)
T ss_pred HHHHHHHHHHHH-HCCCCHH
Confidence 344444433322 3355544
No 147
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.42 E-value=82 Score=25.68 Aligned_cols=26 Identities=4% Similarity=0.339 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
+..+..+.+.++..+..+..+...|+
T Consensus 46 e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 46 EKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444444
No 148
>PRK14162 heat shock protein GrpE; Provisional
Probab=46.37 E-value=22 Score=33.95 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=6.6
Q ss_pred CCCCCCCCCCC
Q 044000 348 PPGWKPGDAVP 358 (420)
Q Consensus 348 PpgWKpGDPi~ 358 (420)
=.||+-||-|-
T Consensus 175 qkGY~l~dRVL 185 (194)
T PRK14162 175 QKGYQYKDRTL 185 (194)
T ss_pred eCCcEeCCEee
Confidence 34677776653
No 149
>PRK14158 heat shock protein GrpE; Provisional
Probab=46.35 E-value=25 Score=33.58 Aligned_cols=9 Identities=11% Similarity=0.372 Sum_probs=4.6
Q ss_pred CCCCCCCCC
Q 044000 349 PGWKPGDAV 357 (420)
Q Consensus 349 pgWKpGDPi 357 (420)
.||+-||-|
T Consensus 176 kGY~l~dRV 184 (194)
T PRK14158 176 KGYLLNERL 184 (194)
T ss_pred CCcEeCCEE
Confidence 455555544
No 150
>PRK14139 heat shock protein GrpE; Provisional
Probab=46.34 E-value=24 Score=33.51 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=6.2
Q ss_pred CCCCCCCCCCC
Q 044000 348 PPGWKPGDAVP 358 (420)
Q Consensus 348 PpgWKpGDPi~ 358 (420)
=.||+-||-|-
T Consensus 164 qkGY~l~dRVL 174 (185)
T PRK14139 164 QKGYTIADRVL 174 (185)
T ss_pred eCCcEeCCEec
Confidence 34666666553
No 151
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=46.23 E-value=1.1e+02 Score=29.83 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 155 ILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 155 ~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
...++.+|.+|..+++.|+.....++++|.+|+..+...-
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444788888999999999999999999999998887754
No 152
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.15 E-value=2.3e+02 Score=27.98 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=21.4
Q ss_pred CcccccccCCCCCCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 107 SLPTFLSSQAQSQPPPPIDSSPSTIKEIIACFTSLQTQLFEAVAELQEILDL 158 (420)
Q Consensus 107 slptfl~s~~~~~~~~p~~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l 158 (420)
.||+||+--- .... ...-..-.+++..|++. ++|..-..+|+|+-+
T Consensus 61 eIP~FlPvl~--~~i~--~qTn~~~a~~lekl~Sq--~~~~lctR~Q~Hl~~ 106 (217)
T KOG4515|consen 61 EIPRFLPVLP--AVIG--KQTNQGAAYTLEKLSSQ--PFFRLCTRLQEHLAV 106 (217)
T ss_pred ccchhhhhhH--HHhc--CCCCcchHHHHHHhcch--HHHHHHHHHHHHHHH
Confidence 5788876321 0011 02222334555555442 355555556666554
No 153
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=46.03 E-value=1.8e+02 Score=24.47 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=25.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 138 FTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 138 f~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
|+..+.++..++.+ +..+++++.+|..|+..-|...-+..+.-+.-.
T Consensus 12 ~~~~~~~~~~k~~~---~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~ 58 (96)
T PF08647_consen 12 FKELSEQADKKVKE---LTILEQKKLRLEAEKAKADQKYFAAMRSKDALD 58 (96)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333334333333 345577777777777766666655554444433
No 154
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.89 E-value=1.6e+02 Score=23.69 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 155 ILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 155 ~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
.+.|..++.+|..+|...-..+......-..|-+.|++...-|
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 3455788888888888888888888888999999999988553
No 155
>PF15556 Zwint: ZW10 interactor
Probab=45.88 E-value=1.1e+02 Score=30.58 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 145 LFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 145 L~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
|.+..+|+++.+.. ++++++|.+|++......-+-..+|..-+.+|.-++
T Consensus 139 Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~qtfLqLl~ 189 (252)
T PF15556_consen 139 LAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRHQTFLQLLY 189 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445444444 667777777888777777778888888887777764
No 156
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=45.70 E-value=1.4e+02 Score=24.43 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 160 DAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
.+++.+-.+|+..++...++..++
T Consensus 44 ~~k~~l~~~l~~le~~r~~~~~~~ 67 (143)
T PF05130_consen 44 EEKQELLEELRELEKQRQQLLAKL 67 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444333
No 157
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=45.67 E-value=1e+02 Score=29.07 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=37.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 134 IIACFTSLQTQLFEAVAELQEILDL--QDAKQKIAREIKAKDSAILAFANKIKE 185 (420)
Q Consensus 134 il~lf~s~QtqL~eAV~ELQE~l~l--Q~eIq~Lk~EIe~kD~~I~~lakkLKe 185 (420)
|=+-|-.+=..|..|..+.+|-+.+ +-+.+..++|.+++++.++++|.+.++
T Consensus 103 INd~Fa~LseAL~~Ad~~aReev~~R~~~~~~~a~ke~~~kEe~lr~lA~~aR~ 156 (158)
T PF02731_consen 103 INDKFAKLSEALYIADRKAREEVRQRAEMQKELAEKEKEEKEEKLRELAQRARE 156 (158)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3356666667777788777776666 334444678889999999999988764
No 158
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=45.62 E-value=1.8e+02 Score=25.50 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
+.++.++..++.++..+=..+..+..+..+-++.++.+...|
T Consensus 51 L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 51 LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY 92 (150)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 344555555555555555555555555555555555554443
No 159
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=45.55 E-value=40 Score=26.99 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 158 LQDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
.|++.-+|++|++.+.+.-..|.+++++++-..
T Consensus 2 ~qq~~l~L~R~~~~~~~~Y~~Ll~r~~e~~~~~ 34 (82)
T PF13807_consen 2 TQQEYLRLQRDVEIKRELYETLLQRYEEARLSK 34 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999999999999999999988664
No 160
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.18 E-value=84 Score=26.71 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 158 LQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+..+.+.++++++.....+..+..++++++.+++.+
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL 43 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEEL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666667777777777777888888777774
No 161
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=45.16 E-value=1.6e+02 Score=25.48 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 044000 162 KQKIAREIKAKDSAILAFANK 182 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakk 182 (420)
.++.++|+..+...++.++.+
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~ 98 (158)
T PF03938_consen 78 RQKRQQELQQKEQELQQFQQQ 98 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544433
No 162
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=45.02 E-value=1.2e+02 Score=31.23 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=40.0
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHH
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILA-------FANKIKEAERVLD 191 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~-------lakkLKeAE~~Ld 191 (420)
.|---||+ ..+++.+.|.|.+..|+++ +.+|..|+..+-..-+.|.. -+--||||++.+.
T Consensus 61 TPLQQKEV--~iRHLkakLkes~~~l~dR---etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIk 127 (305)
T PF15290_consen 61 TPLQQKEV--CIRHLKAKLKESENRLHDR---ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIK 127 (305)
T ss_pred ChHHHHHH--HHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554 6788888899999888764 88888888777666655542 2344666665443
No 163
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=44.96 E-value=2.2e+02 Score=27.97 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHh
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKA-----KDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~-----kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.+++|.++++.+...-+.+.++-++..+..+..+++.+....+ +..++.+....++++++..+.+=
T Consensus 109 e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~ 179 (234)
T cd07665 109 ELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYE 179 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888887777777777777776665555553333222 22345555555555555444443
No 164
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.93 E-value=1.3e+02 Score=30.27 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+.+++.|+++.+..-.....+..+.+.++.-|+++
T Consensus 248 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 248 EEKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 55555555555555555556666666666666653
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.91 E-value=82 Score=30.81 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 153 QEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 153 QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+..+++|++|+.|++||...--.|.++..+|....+.-..+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34478899999999999999999999999888877655554
No 166
>PRK11546 zraP zinc resistance protein; Provisional
Probab=44.83 E-value=1.2e+02 Score=28.20 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHH
Q 044000 144 QLFEAVAELQEILDL----QDAKQKIAREIKAKDSA 175 (420)
Q Consensus 144 qL~eAV~ELQE~l~l----Q~eIq~Lk~EIe~kD~~ 175 (420)
+|..+-.||+..+.- +++|.+|.+||......
T Consensus 69 qL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 69 QLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQS 104 (143)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344455555444333 56666666666554443
No 167
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=44.79 E-value=86 Score=26.06 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAEL 152 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~EL 152 (420)
-+..|++++|+.+-..|-+...++
T Consensus 73 ~s~~eA~~~l~~r~~~l~~~~~~l 96 (120)
T PF02996_consen 73 MSLEEAIEFLKKRIKELEEQLEKL 96 (120)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777766655555444444
No 168
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=44.72 E-value=64 Score=28.50 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044000 144 QLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERV 189 (420)
Q Consensus 144 qL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~ 189 (420)
.|-.|+.+++.|=.-..-+...+.+|+++...|......|++|+.-
T Consensus 47 GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~ 92 (115)
T PF06476_consen 47 GLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAK 92 (115)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3777777777664444444444555555555555555555555543
No 169
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=44.63 E-value=56 Score=32.11 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
+++.+.++.+.+.+..+....++.||..+-...-+++++||+..|.
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3466667777777777777777777777777788888877664443
No 170
>PRK03918 chromosome segregation protein; Provisional
Probab=44.62 E-value=1.7e+02 Score=32.22 Aligned_cols=8 Identities=25% Similarity=0.667 Sum_probs=3.3
Q ss_pred ccCccccc
Q 044000 105 RGSLPTFL 112 (420)
Q Consensus 105 rgslptfl 112 (420)
-|.+-.|+
T Consensus 134 Qg~~~~~~ 141 (880)
T PRK03918 134 QGEIDAIL 141 (880)
T ss_pred ccchHHHh
Confidence 34444443
No 171
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=44.59 E-value=99 Score=27.74 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
|.++..+..+|+...+.++++.++|+
T Consensus 82 ~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 82 QSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56667788888888888888888875
No 172
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=44.56 E-value=2.3e+02 Score=25.29 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
..+..++..-..+.++|. .++.-...+|.++.++++..+.-.+.|+.|.++.+..++.+....
T Consensus 20 ~~~e~ll~~~~~LE~qL~---~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLA---ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred ccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455554 333334556888999999999889999999999999888888865
No 173
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.42 E-value=1e+02 Score=34.88 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
.++|-+.|+|+.||++.+.+|.++.+.+-.++..|..+
T Consensus 96 ~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~L 133 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSAL 133 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44577777888888888888887777777777666553
No 174
>PRK10780 periplasmic chaperone; Provisional
Probab=44.36 E-value=1.7e+02 Score=26.34 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=24.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhHHHH
Q 044000 133 EIIACFTSLQTQLFEAVAELQEILDL---------QDAKQKIAREIKAKDSAIL 177 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~ELQE~l~l---------Q~eIq~Lk~EIe~kD~~I~ 177 (420)
++-..|...|+.|-....+++...+. +.+.+..++||..+...++
T Consensus 47 ~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q 100 (165)
T PRK10780 47 QLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFS 100 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 34446677777777666666643332 3344555666655544433
No 175
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=44.13 E-value=30 Score=30.93 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=29.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 137 CFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
+++++-..|+..+ ..++++++.|..-|.+||..|..+..+++
T Consensus 129 ~~~~L~~Pll~~~------~~l~~~~~~L~~~l~~KD~~i~~l~~~~~ 170 (171)
T PF09302_consen 129 FLSHLNSPLLRMS------SALQRQVESLKDLLKEKDKEIEKLRDKLE 170 (171)
T ss_dssp HHHHTHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444444 44477779999999999999999887764
No 176
>PF10774 DUF4226: Domain of unknown function (DUF4226); InterPro: IPR019710 This entry represents an uncharacterised family of proteins belonging to Mycobacteria. It was previously incorrectly annotated as Biofilm regulator BssS (also known as YliH).
Probab=44.04 E-value=2.1e+02 Score=25.38 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=37.2
Q ss_pred HHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHH----------HH----HHHHHHHHHHHHHH
Q 044000 135 IACFTSLQTQLFEAVAELQE-ILDLQDAKQKIAREIKAKDSAIL----------AF----ANKIKEAERVLDIL 193 (420)
Q Consensus 135 l~lf~s~QtqL~eAV~ELQE-~l~lQ~eIq~Lk~EIe~kD~~I~----------~l----akkLKeAE~~Ld~~ 193 (420)
++.+...+.+|..++..... +..-.+++..|.+||+..=..+. +| ..||+|+..+|...
T Consensus 21 ~~a~~eaD~~l~~~l~~A~~~~~~gr~~Ld~i~aeI~~Av~~~~~aldTPaG~r~f~~fL~~kl~ei~~Vv~~a 94 (112)
T PF10774_consen 21 LDASAEADRQLADALTNAHAAAAEGRRRLDAIQAEIEAAVAAQAPALDTPAGAREFQRFLRGKLREIHTVVADA 94 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667776666554 45558888889999887533332 33 45666666666664
No 177
>PRK14161 heat shock protein GrpE; Provisional
Probab=43.94 E-value=40 Score=31.73 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=4.7
Q ss_pred CCCCCCCCC
Q 044000 349 PGWKPGDAV 357 (420)
Q Consensus 349 pgWKpGDPi 357 (420)
.||+-||-|
T Consensus 158 ~GY~l~dRV 166 (178)
T PRK14161 158 SGYKIRDRL 166 (178)
T ss_pred CCcEeCCEe
Confidence 455555544
No 178
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=43.33 E-value=1e+02 Score=30.29 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
+.+++.+++.++.+...+.....+++.++..|+.+=.+|.+|+.
T Consensus 99 ~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~ 142 (346)
T PRK10476 99 DAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEP 142 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555666666777777777776666665543
No 179
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=43.24 E-value=1.8e+02 Score=23.57 Aligned_cols=34 Identities=3% Similarity=0.083 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
-++.+.+..+++.|-+.+..+....++.-+.+..
T Consensus 53 l~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 53 LHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444555555666666666666555555544443
No 180
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=43.01 E-value=2.6e+02 Score=26.92 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
...++.|+.++.........+.++|.+.++.++.-+++
T Consensus 222 r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~ 259 (312)
T PF00038_consen 222 RRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555554443
No 181
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.95 E-value=74 Score=34.76 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHhhhhcccccccccccC
Q 044000 160 DAKQKIAREIKAKDSAIL---AFANKIKEAERVLDILVDDYSDYRRPKRVKSE 209 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~---~lakkLKeAE~~Ld~~VdD~~~yqa~KRlKs~ 209 (420)
.+|++++++++..|+.|+ .++.+|+..=.-|...|..+. |-. |+|.+
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~-ytq--rikEi 394 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKV-YTQ--RIKEI 394 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHH-HHH--HHHHH
Confidence 788999999999999999 999999988877777666655 544 66665
No 182
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=42.77 E-value=84 Score=35.40 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.-++++|++|++++.+.|..+.+-|..-++....++
T Consensus 436 ~le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~ 471 (742)
T PRK05561 436 KLEEIEIRKEQDELRKEIAELEAILASERKLRKLIK 471 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 566677777777777777777777666554443333
No 183
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=42.72 E-value=1.7e+02 Score=31.79 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
++++.+++++++.....+..+.+++.+.++.+
T Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 434 QNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 184
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=42.59 E-value=89 Score=32.30 Aligned_cols=50 Identities=8% Similarity=0.170 Sum_probs=28.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 138 FTSLQTQLFEAVAELQEILDL-------------QDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 138 f~s~QtqL~eAV~ELQE~l~l-------------Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
|.....+|+++..+|+..++. ..+|..+-+.|.+..+.++++.++|++.+
T Consensus 254 fak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 254 NAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455566666666555443 55566666666666666666666655443
No 185
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.57 E-value=1e+02 Score=26.87 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
++++..++.++.+++.....+.++...+.+.+.+++.+
T Consensus 9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l 46 (140)
T PRK03947 9 EELAAQLQALQAQIEALQQQLEELQASINELDTAKETL 46 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466667777777777777777777777776666554
No 186
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=42.47 E-value=1.9e+02 Score=28.27 Aligned_cols=40 Identities=10% Similarity=0.309 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
+.+++.++++++.....|.++..+++.++..|...-+++.
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~ 182 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE 182 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666665554444
No 187
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=42.41 E-value=2.1e+02 Score=24.16 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 129 STIKEIIACFTSLQTQ----LFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 129 ~s~keil~lf~s~Qtq----L~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
..+...|.-|++.=.+ +-.....-.+.+.++..+.+|.+++...+.....+..-=++..+-|..++
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544433333 22223333445566778888888887777665544444444444455444
No 188
>PRK04325 hypothetical protein; Provisional
Probab=42.30 E-value=1.9e+02 Score=23.63 Aligned_cols=28 Identities=4% Similarity=0.146 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEA 186 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeA 186 (420)
++.|+.|.+.|-+..+.|..+.++|+.-
T Consensus 22 E~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 22 EDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544444444444444433
No 189
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=41.85 E-value=2.3e+02 Score=26.84 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=30.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKA-----KDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~-----kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
++-+.++.+.-.-|....+-++..+..++.+++.+.-+++ |-..|.++.+.++++|...+.+-.+|.
T Consensus 102 ~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe 173 (224)
T cd07623 102 KDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFE 173 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444334444444444444444333333333222 223455666666666666665554443
No 190
>PRK00295 hypothetical protein; Provisional
Probab=41.83 E-value=1.8e+02 Score=23.35 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
++.|+.|.+.|-...+.|..+.++|+.-..
T Consensus 18 E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 18 DDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444433
No 191
>PRK14140 heat shock protein GrpE; Provisional
Probab=41.69 E-value=30 Score=33.02 Aligned_cols=10 Identities=40% Similarity=0.494 Sum_probs=5.9
Q ss_pred CCCCCCCCCC
Q 044000 349 PGWKPGDAVP 358 (420)
Q Consensus 349 pgWKpGDPi~ 358 (420)
.||+-||-|-
T Consensus 173 kGY~l~dRVL 182 (191)
T PRK14140 173 KGYKLKDRVI 182 (191)
T ss_pred CCeEeCCEEe
Confidence 4666666553
No 192
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=41.67 E-value=41 Score=27.69 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=18.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhH
Q 044000 149 VAELQEILDL-QDAKQKIAREIKAKDS 174 (420)
Q Consensus 149 V~ELQE~l~l-Q~eIq~Lk~EIe~kD~ 174 (420)
|.||.++.-+ |.+|++|++|..+|+.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5666555443 8888888888877764
No 193
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.65 E-value=1.6e+02 Score=29.11 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=6.6
Q ss_pred HHHHHHHHhhHHHHHH
Q 044000 164 KIAREIKAKDSAILAF 179 (420)
Q Consensus 164 ~Lk~EIe~kD~~I~~l 179 (420)
+++.||++.+..+.+.
T Consensus 181 ~~~~ev~~~e~kve~a 196 (243)
T cd07666 181 LLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444443333
No 194
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=41.28 E-value=51 Score=32.28 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 147 EAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 147 eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
+....-..+++++..|..|..+|.+||..|..|+.+..
T Consensus 130 el~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~ 167 (205)
T PF12240_consen 130 ELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRSR 167 (205)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444456778899999999999999999998887654
No 195
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=41.20 E-value=1.2e+02 Score=26.98 Aligned_cols=9 Identities=11% Similarity=0.383 Sum_probs=4.1
Q ss_pred ChHHHHHHH
Q 044000 230 NLSDILSYA 238 (420)
Q Consensus 230 ~~eDLIsYA 238 (420)
+-++||.+.
T Consensus 92 ~~~~vl~~L 100 (149)
T PF07352_consen 92 DEEKVLEWL 100 (149)
T ss_dssp -HHHHHHHH
T ss_pred CHHHHHHHH
Confidence 445555554
No 196
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=41.11 E-value=3e+02 Score=27.78 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHH
Q 044000 131 IKEIIACFTSLQTQ---LFEAVAELQE-ILDLQDAKQKIAREIKAKDSAIL 177 (420)
Q Consensus 131 ~keil~lf~s~Qtq---L~eAV~ELQE-~l~lQ~eIq~Lk~EIe~kD~~I~ 177 (420)
++++..-+..++.+ |.+.+.+|+. ..++.+++..|++|.+..+....
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333 3333333332 23334555555555555544433
No 197
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.05 E-value=1.2e+02 Score=24.19 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
|-++.-.+.-|++.+..|.+-++++..-++.|..+.
T Consensus 10 E~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 10 EIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666666655555555554
No 198
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=40.99 E-value=1.1e+02 Score=29.78 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHhhhhcccccccccccC
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKI-----KEAERVLDILVDDYSDYRRPKRVKSE 209 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkL-----KeAE~~Ld~~VdD~~~yqa~KRlKs~ 209 (420)
+.++.+++.|++++..-|..|..|...| .+--+.|+..|..|. +|++.+
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~-----erl~~~ 142 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYR-----ERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 3345566666666666666666665543 344456777775543 355554
No 199
>PRK02793 phi X174 lysis protein; Provisional
Probab=40.88 E-value=2e+02 Score=23.42 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 147 EAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 147 eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
+.+.+|...+-- ++.|+.|.+.|-.....|..+.++|+.-..-|.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333332 455666666666666666666665555444443
No 200
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=40.66 E-value=54 Score=25.69 Aligned_cols=26 Identities=12% Similarity=0.364 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 158 LQDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
++.++.+|++++......|..+.++|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444
No 201
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=40.55 E-value=2.7e+02 Score=24.90 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhHHH---HHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044000 131 IKEIIACFTSLQTQ---LFEAVAELQEILDLQD-----AKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDY 200 (420)
Q Consensus 131 ~keil~lf~s~Qtq---L~eAV~ELQE~l~lQ~-----eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~y 200 (420)
|++.++-++..|+- +++.+..+-+..+.++ ....|+.+.+.|....++++..+.|=...|+++-.+|...
T Consensus 29 c~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL 106 (120)
T PF14931_consen 29 CKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRSEYESL 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433 4555554444433332 2345889999999999999999999999999988776544
No 202
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=40.47 E-value=1e+02 Score=26.23 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIARE 168 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~E 168 (420)
-+++|++++|+.+-..|.+...++++.+.. +++++.+..+
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888777776666666544332 4444444433
No 203
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=40.38 E-value=2.5e+02 Score=24.56 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+...++|+.||-+.=+.|....++|+..++..+-
T Consensus 85 ~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~L 118 (132)
T PF10392_consen 85 QSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDL 118 (132)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777777776665554
No 204
>PRK04325 hypothetical protein; Provisional
Probab=40.25 E-value=2.1e+02 Score=23.44 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
++.=.+.-|+..+..|.+-++++..-++.|..+
T Consensus 17 klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 17 QLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443333333333
No 205
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=40.10 E-value=1.3e+02 Score=31.04 Aligned_cols=64 Identities=27% Similarity=0.300 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQ--------------------------------------KIAREIK 170 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq--------------------------------------~Lk~EIe 170 (420)
..+.|.....+.++.+|.+...|+.+.. +.|. .|..||.
T Consensus 251 ~Ri~et~~ak~~Le~ql~~~~~ei~~~e---~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~ 327 (384)
T PF03148_consen 251 KRIHETQEAKNELEWQLKKTLQEIAEME---KNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVK 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHH
Confidence 4567777788888888887777665542 2222 2556777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 171 AKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 171 ~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
.....|..|..+|.+|+..|..++.
T Consensus 328 ~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 328 ELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888887764
No 206
>PRK04406 hypothetical protein; Provisional
Probab=40.02 E-value=2.1e+02 Score=23.55 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 146 FEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 146 ~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
-+.+.+|...+-- ++.|+.|.+.|-...+.|..+.++|+.-..-|.
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443332 455666666666666666666666665544443
No 207
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=39.86 E-value=1.4e+02 Score=27.53 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=35.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 134 IIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 134 il~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
...-+...+.+|..+-.+++...++.++-..-+.|++.....+.....+++.++..|+.+-
T Consensus 21 ~~a~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (265)
T TIGR00999 21 MAAELKVAQKRVELARKTYEREKKLFEQGVIPRQEFESAEYALEEAQAEVQAAKSELRSAR 81 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344555566666555555555444333223355666666677777777777777776643
No 208
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=39.75 E-value=1.9e+02 Score=29.19 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=18.9
Q ss_pred CCCchHHHHHHHHHHHhhhhhhccc
Q 044000 70 LPPLPRAQALLLQMASLASKLFEVS 94 (420)
Q Consensus 70 lppl~raq~ll~~ma~las~lfe~s 94 (420)
+==+..++.|-.+|...+..||++=
T Consensus 116 ~~dlk~~R~Laseit~~GA~LydlL 140 (267)
T PF10234_consen 116 IQDLKAARQLASEITQRGASLYDLL 140 (267)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888888888888753
No 209
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=39.74 E-value=1.1e+02 Score=32.86 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDL------------------------QDAKQKIAREIKAKDSAILAFANKIKE 185 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~l------------------------Q~eIq~Lk~EIe~kD~~I~~lakkLKe 185 (420)
.+++.+.-|..-.....+.+.+++..+.. +++|++|.++++...--+.++.+++.+
T Consensus 401 ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e 480 (569)
T PRK04778 401 KLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEE 480 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhcccccccccccCCCCCCCCCCCCcccccccCCChHHHHHHHhh
Q 044000 186 AERVLDILVDDYSDYRRPKRVKSEGGDGNDDDSGSCSTTVESRLNLSDILSYAHR 240 (420)
Q Consensus 186 AE~~Ld~~VdD~~~yqa~KRlKs~~~~~~~e~~~~~~~A~~~~V~~eDLIsYAHR 240 (420)
++..++.+.++..|. ..+.-..+.+|.|+.|
T Consensus 481 ~~~~~~~L~~q~~dL------------------------~~~a~~lE~~Iqy~nR 511 (569)
T PRK04778 481 ATEDVETLEEETEEL------------------------VENATLTEQLIQYANR 511 (569)
T ss_pred HHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHhc
No 210
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=39.69 E-value=1.9e+02 Score=25.92 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
....+.|+.+-.++...|..++.++.++.+.|+.
T Consensus 43 ~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 43 RNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677788888888888888888888877765
No 211
>PRK14154 heat shock protein GrpE; Provisional
Probab=39.61 E-value=82 Score=30.64 Aligned_cols=27 Identities=7% Similarity=0.282 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
++..|+.+|+...+.+.++..++..+.
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ 79 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQ 79 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655555555544443333
No 212
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=39.51 E-value=4.4e+02 Score=27.01 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 129 STIKEIIACFTSLQT---QLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 129 ~s~keil~lf~s~Qt---qL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+.|.++..++...+. .|=..|.-|+....+|.+...-..-+...|.....++..|+..+..|..+=
T Consensus 295 ~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve 363 (388)
T PF04912_consen 295 SKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVE 363 (388)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444433 344555555555666888888888888888888888888888888887764
No 213
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=39.45 E-value=2.9e+02 Score=28.13 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=30.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 138 FTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 138 f~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
++..++.-.++-..-+.......+++.++.|...+.+.+..+..++.++..-|..+
T Consensus 185 ~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 185 YDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333334455666666666666666666666666666665554
No 214
>PLN02678 seryl-tRNA synthetase
Probab=39.30 E-value=1.3e+02 Score=32.11 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 163 QKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 163 q~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+.|.+++....+.|..+..+|++.+..|..++
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666666554
No 215
>PRK04654 sec-independent translocase; Provisional
Probab=39.22 E-value=1.5e+02 Score=29.39 Aligned_cols=58 Identities=10% Similarity=0.244 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++++-+.|++.+.++.+-+. ..++++.++.++++|+.....+++..++|+++-+.+..
T Consensus 36 irk~R~~~~~vk~El~~El~----~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~~ 93 (214)
T PRK04654 36 VRRARMQWDSVKQELERELE----AEELKRSLQDVQASLREAEDQLRNTQQQVEQGARALHD 93 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333445555555444332 23456777888888888888899999999988887763
No 216
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.21 E-value=94 Score=27.19 Aligned_cols=38 Identities=8% Similarity=0.160 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
.-...|+..+.+-|..=..++.+.-+++..++.-|++|
T Consensus 96 ~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f 133 (150)
T PF07200_consen 96 ALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQF 133 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 33444555555555555555555555555555555543
No 217
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=39.15 E-value=1.6e+02 Score=29.17 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
+.-.-||..+++---++-+.+.||.+.+.. ++++..|++||++....=..|-.|.+
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777666788888888777655 78888999999988877666666654
No 218
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.98 E-value=1.3e+02 Score=25.68 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAEL 152 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~EL 152 (420)
-+++|++..|+.+-..|-+..+++
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l 106 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKL 106 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777766666655555555
No 219
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=38.94 E-value=3.3e+02 Score=26.20 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 163 QKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 163 q~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+.+++.++...+.-..+.+.|++|+..|+.
T Consensus 223 ~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 223 EDLEKKKQELSEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555566666666655
No 220
>PRK10997 yieM hypothetical protein; Provisional
Probab=38.84 E-value=1.8e+02 Score=31.68 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=41.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCCC
Q 044000 139 TSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRVKSEGGDGNDDDS 218 (420)
Q Consensus 139 ~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KRlKs~~~~~~~e~~ 218 (420)
+.-...|..++..+|.. .++++++++-+|+..|=+.+.++..-|.+-.....++-
T Consensus 134 ~~w~~~l~~~~~~~~~~-~~e~~re~~l~el~~r~e~~~~l~~v~~~~~~~~grlW------------------------ 188 (487)
T PRK10997 134 QRWRLSLVVQTTTLNQQ-LLEQEREQLLAELQQRMTLSGQLEPVLAENDEAAGRLW------------------------ 188 (487)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcccc------------------------
Confidence 33444566666655543 23666666666665554444444433333332111111
Q ss_pred CCcccccccCCChHHHHHHHhhhh
Q 044000 219 GSCSTTVESRLNLSDILSYAHRIS 242 (420)
Q Consensus 219 ~~~~~A~~~~V~~eDLIsYAHRIS 242 (420)
|+.+......+++.|.+||..|-
T Consensus 189 -d~s~g~l~~~d~~~~~~~a~~L~ 211 (487)
T PRK10997 189 -DMSAGQLKRGDYQLIVQYGEFLK 211 (487)
T ss_pred -ccccCcccccCHHHHHHHHHHHH
Confidence 13344555677888888887764
No 221
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=38.81 E-value=1.2e+02 Score=25.50 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhhHH
Q 044000 160 DAKQKIAREIKAKDSA 175 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~ 175 (420)
++++.|+++|......
T Consensus 82 ~~~~~l~~~i~~l~~~ 97 (108)
T cd01107 82 EKLAELEAEIEELQRI 97 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444433333
No 222
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.80 E-value=56 Score=35.15 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 044000 149 VAELQEILDLQDAKQKIAREIKAKDSAILAFANK 182 (420)
Q Consensus 149 V~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakk 182 (420)
+...|.+.+++++++.|++||+.-|...++..|.
T Consensus 236 ~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~ 269 (439)
T KOG2911|consen 236 ADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKE 269 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777888888888888888888865443
No 223
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.65 E-value=2.7e+02 Score=28.85 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=6.8
Q ss_pred chhHHHHHHHHHhhHHH
Q 044000 128 PSTIKEIIACFTSLQTQ 144 (420)
Q Consensus 128 ~~s~keil~lf~s~Qtq 144 (420)
+..+..+-.....++.+
T Consensus 298 ~~~~~~l~d~i~~l~~~ 314 (562)
T PHA02562 298 PDRITKIKDKLKELQHS 314 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344444444
No 224
>PRK02119 hypothetical protein; Provisional
Probab=38.58 E-value=2.2e+02 Score=23.27 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 147 EAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 147 eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
+.+.+|..++-- ++.|+.|.+.|-+..+.|..+.++|+.-..-|
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333322 44555566666665555555555555444333
No 225
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=38.53 E-value=2.1e+02 Score=23.00 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
.+|++..-|..+...+..+.+...+. ...+.+|+.++|..-+....+++|.
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~---~~~i~RLE~H~ETlRk~mv~L~kKi 52 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKEN---SEAIKRLEHHIETLRKYMVILAKKI 52 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666666666666666666666555 7778889999988888887777764
No 226
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=38.42 E-value=1.2e+02 Score=26.81 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044000 174 SAILAFANKIKEAERVLDI 192 (420)
Q Consensus 174 ~~I~~lakkLKeAE~~Ld~ 192 (420)
..|...++||.+|+..|..
T Consensus 96 ~KI~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 96 DKIAKRQKKLAEAKAELKE 114 (115)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5677778888888887764
No 227
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=38.36 E-value=2.9e+02 Score=25.99 Aligned_cols=70 Identities=11% Similarity=0.282 Sum_probs=45.0
Q ss_pred hhHHHHHHH-------HHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 129 STIKEIIAC-------FTSLQTQLFEAVAELQEILD----LQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 129 ~s~keil~l-------f~s~QtqL~eAV~ELQE~l~----lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
.++|.++.- +.+.+..|..+...+..... ..++++.++.||++-........++..++......-|.+|
T Consensus 101 ~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF 180 (216)
T cd07627 101 GSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERF 180 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666653 33334444444444433321 2578888888988888888888888888777777766665
Q ss_pred c
Q 044000 198 S 198 (420)
Q Consensus 198 ~ 198 (420)
+
T Consensus 181 ~ 181 (216)
T cd07627 181 E 181 (216)
T ss_pred H
Confidence 4
No 228
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=38.34 E-value=6e+02 Score=28.30 Aligned_cols=34 Identities=9% Similarity=0.338 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+.++.++..|++++......+.++++--++.++-
T Consensus 355 ~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l 388 (594)
T PF05667_consen 355 KSSLKQLEEELEEKEAENEELEEELKLKKKTVEL 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443333
No 229
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.24 E-value=1.8e+02 Score=31.94 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhhcccCCcchhhhhcccCccc
Q 044000 78 ALLLQMASLASKLFEVSPNRSLWISAFRGSLPT 110 (420)
Q Consensus 78 ~ll~~ma~las~lfe~s~nr~~w~~~~rgslpt 110 (420)
.+|++-.++-..+.--| ...-|+.+|--+.+|
T Consensus 171 ehfqq~~~~l~dpi~~s-d~~~~ld~wg~~~~t 202 (521)
T KOG1937|consen 171 EHFQQCNAVLNDPIPNS-DPRKWLDQWGNSSHT 202 (521)
T ss_pred HHHHHHHHHhcCccccc-chhhHHHHHhccCCc
Confidence 46777777766655322 346799999999998
No 230
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=38.21 E-value=2.2e+02 Score=27.13 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHH
Q 044000 143 TQLFEAVAELQEILDLQDAKQKIAREIKAK-------DSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 143 tqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~k-------D~~I~~lakkLKeAE~~Ld~ 192 (420)
.+|-+.+..-..+.++..++..++.+|+.+ |..|..+..++.+-++....
T Consensus 93 ~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~ 149 (190)
T PF05266_consen 93 SRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAK 149 (190)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555666666655 66777776666666655433
No 231
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=38.17 E-value=1.6e+02 Score=32.36 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044000 174 SAILAFANKIKEAERVLDI 192 (420)
Q Consensus 174 ~~I~~lakkLKeAE~~Ld~ 192 (420)
+.|.++-..|++||..|+.
T Consensus 309 kelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4677777777777777653
No 232
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=38.14 E-value=1.4e+02 Score=27.21 Aligned_cols=30 Identities=7% Similarity=0.243 Sum_probs=15.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 165 IAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 165 Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
|+|.+.+.++++..+.+.+...+...+..+
T Consensus 71 l~Rk~~kl~~el~~~~~~~~~~~~~~~~~~ 100 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLSSEKSSFDKSL 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554444443
No 233
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=38.14 E-value=3.4e+02 Score=27.28 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQE-ILDLQDAKQKIAREIK-AKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE-~l~lQ~eIq~Lk~EIe-~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
+-..++.+-+. ++++.++....++. .-+.+..++++++.++ .|+=.|+.||+.|=+.-..|+.++.
T Consensus 71 ae~~~l~~~~k-~~~e~~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~ 138 (236)
T KOG3003|consen 71 AEKALLEKVLK-LEKEEQELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATE 138 (236)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333 23333444333333 3367888888888887 6788999999999999999999874
No 234
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=38.13 E-value=3.6e+02 Score=25.71 Aligned_cols=73 Identities=7% Similarity=0.228 Sum_probs=44.9
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHhhHHHHHH
Q 044000 126 SSPSTIKEIIACFTSLQTQLFEAVAELQEILDL--------------------------QDAKQKIAREIKAKDSAILAF 179 (420)
Q Consensus 126 ~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l--------------------------Q~eIq~Lk~EIe~kD~~I~~l 179 (420)
-.-+...-+++.|..++..+-.+-.+..+.... -+++..+++-|+.-|..+.-+
T Consensus 24 ~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl 103 (159)
T PF04949_consen 24 EDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPL 103 (159)
T ss_pred hHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHH
Confidence 344566778888888776654443333322221 456666777777777777766
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 044000 180 ANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 180 akkLKeAE~~Ld~~VdD~~ 198 (420)
.+.-.-.|+.+..+++.|+
T Consensus 104 ~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 104 GQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666554
No 235
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.09 E-value=1.5e+02 Score=31.29 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhhhhcccCC
Q 044000 75 RAQALLLQMASLASKLFEVSPN 96 (420)
Q Consensus 75 raq~ll~~ma~las~lfe~s~n 96 (420)
+.+.|=.++..|-..+-++...
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~ 93 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDR 93 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777666666543
No 236
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=38.07 E-value=3.5e+02 Score=25.82 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 152 LQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 152 LQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
|-+.-++++++..++.+++..|..|..+.++|.-+......-+
T Consensus 117 L~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql 159 (194)
T PF15619_consen 117 LAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQL 159 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344555888888999999999999999998888877776644
No 237
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=38.03 E-value=2.8e+02 Score=24.40 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=29.3
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
...+...|+.++..+ |..........-.+..++.++..+++.....+..+..++.++++.+..+
T Consensus 29 ~~~~~~~vin~i~~L---l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 29 SEDNDVRVINCIYDL---LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred ccccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544332 2222222222223344555555555555555555555555555555443
No 238
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=37.96 E-value=2.9e+02 Score=24.45 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQ----------------LFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 129 ~s~keil~lf~s~Qtq----------------L~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++.+.-+.+|.+..+. ||..+..+ |-.+-+.|+.++ |-+..=+.+++--.+++||...|+.
T Consensus 5 ~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~~lt~m--H~~LL~~i~~~e-e~R~~~E~lQdkL~qi~eAR~AlDa 81 (96)
T PF12210_consen 5 NTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAM--HPQLLKYIQEQE-EKRVYYEGLQDKLAQIKEARAALDA 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhcccccccc
Q 044000 193 LVDDYSDYRRPKR 205 (420)
Q Consensus 193 ~VdD~~~yqa~KR 205 (420)
+=++ ++.|+|
T Consensus 82 lR~e---H~~klr 91 (96)
T PF12210_consen 82 LREE---HREKLR 91 (96)
T ss_dssp HHHH---HHHHHH
T ss_pred HHHH---HHHHHH
No 239
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.63 E-value=1.8e+02 Score=33.06 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 145 LFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 145 L~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
..+-|.|+-..+-++++++.|++|+..--+.|..+-+..++.|+.|-.
T Consensus 437 ~~~~VQe~~~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l~~ 484 (758)
T COG4694 437 FKSDVQEYNKYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFLVS 484 (758)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 445666666667779999999999999999999999999999988844
No 240
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=37.47 E-value=2.7e+02 Score=27.13 Aligned_cols=70 Identities=23% Similarity=0.264 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRVKSE 209 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KRlKs~ 209 (420)
.+++-+.+-.+|.++.++.+++.+.-+.-+.++..++|.+...+.=..|++. +.+ .++.+|+=| ++||..
T Consensus 65 ~da~~dq~~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~~e~re~~l~~-~qa--e~~klv~iY------~~Mkp~ 134 (192)
T COG3334 65 ADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGILRS-KQA--EDGKLVKIY------SKMKPD 134 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh--hhhHHHHHH------HcCChh
Confidence 3444456667777777777766665444444444444444444444444433 333 344455444 366664
No 241
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.36 E-value=1.8e+02 Score=26.14 Aligned_cols=22 Identities=9% Similarity=0.280 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFA 180 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~la 180 (420)
...|..|++|++.....+..|.
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 242
>PRK00736 hypothetical protein; Provisional
Probab=37.35 E-value=2.2e+02 Score=22.92 Aligned_cols=28 Identities=4% Similarity=0.187 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEA 186 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeA 186 (420)
++.|+.|.+.|-...+.|..+.++|+.-
T Consensus 18 e~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 18 EKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444443
No 243
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=37.33 E-value=2.1e+02 Score=26.51 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 128 PSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKE 185 (420)
Q Consensus 128 ~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKe 185 (420)
.-+..|+++.|..+=..|-++.. +++++++.|.+.+...+..+++++.+-+.
T Consensus 89 e~~~~eAie~l~k~~~~l~~~~~------~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 89 EKSADEAIEFLKKRIEELEKAIE------KLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred eecHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666554444433332 22555555555555555555555554443
No 244
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=37.32 E-value=83 Score=27.14 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=9.8
Q ss_pred hhhcccCCcchhhhhcccCcc
Q 044000 89 KLFEVSPNRSLWISAFRGSLP 109 (420)
Q Consensus 89 ~lfe~s~nr~~w~~~~rgslp 109 (420)
+.+.||++ +++.=--.|-|+
T Consensus 7 ~~~gvs~~-tlR~Ye~~GLl~ 26 (124)
T TIGR02051 7 KAAGVNVE-TIRYYERKGLLP 26 (124)
T ss_pred HHHCcCHH-HHHHHHHCCCCC
Confidence 45566654 333333356664
No 245
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=37.18 E-value=2.7e+02 Score=26.01 Aligned_cols=54 Identities=19% Similarity=0.083 Sum_probs=37.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCCCCCcccccccCCChHHHHHHHhhhh
Q 044000 171 AKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRVKSEGGDGNDDDSGSCSTTVESRLNLSDILSYAHRIS 242 (420)
Q Consensus 171 ~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KRlKs~~~~~~~e~~~~~~~A~~~~V~~eDLIsYAHRIS 242 (420)
.+|+.......+.+..|..|.+++.+.- +.+.... . +-+.=..++||+||.-|.
T Consensus 85 ~~~~~~a~~~~~~~~~ea~L~~~~~~~~-----~~~~~~~------------~-~~~~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 85 KIDSLESEFLIKKKNLEQDLKNSINQNI-----EDINLAA------------K-QFRTNKSEAIIKLAVNII 138 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH------------H-HHHHhHHHHHHHHHHHHH
Confidence 4788888888899999999999985432 3444431 1 222234789999988775
No 246
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=37.17 E-value=3.5e+02 Score=25.29 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDL------------------QDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~l------------------Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
.+..+-.+.+.-..|-+|.+.+.| -+. |.+++.++++|+.+...+..-++.|-+++..|
T Consensus 31 ~a~a~~~~~~r~seldqA~~~~~e-ae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv~nkq~~l~AA~~~l~~~~~el 107 (136)
T PF11570_consen 31 QASAEQALNGRRSELDQANKKVKE-AEIKQDEFFANNPPHEYGRGWQLKVRRAQKDVQNKQNKLKAAQKELNAADEEL 107 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-HHhcccccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344445567777777777777776 222 66777788888888888888888888888443
No 247
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.07 E-value=1.5e+02 Score=24.72 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=6.4
Q ss_pred hHHHHHHHHHhhHH
Q 044000 130 TIKEIIACFTSLQT 143 (420)
Q Consensus 130 s~keil~lf~s~Qt 143 (420)
+..|++..|+.+-.
T Consensus 84 ~~~eA~~~l~~r~~ 97 (129)
T cd00890 84 SLEEAIEFLKKRLE 97 (129)
T ss_pred cHHHHHHHHHHHHH
Confidence 44555544443333
No 248
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.05 E-value=1.1e+02 Score=25.61 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
.++++.|+.+|+..+..+..+.+++++.+.-|.
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 249
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=36.95 E-value=1.2e+02 Score=25.87 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+++..++.++++++.....+.++...+.+.+..++.+
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666677777766666666666554
No 250
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=36.90 E-value=2.2e+02 Score=31.79 Aligned_cols=18 Identities=44% Similarity=0.449 Sum_probs=13.1
Q ss_pred hhhhhhhcccccCCCchh
Q 044000 272 RASQLYTFADLDVGLPKV 289 (420)
Q Consensus 272 RaG~L~~~Adl~vg~pk~ 289 (420)
+.++...+++++|.+||-
T Consensus 387 y~~~~~tv~~~~v~tp~l 404 (596)
T KOG4360|consen 387 YSSQQQTVARLQVQTPKL 404 (596)
T ss_pred hhhhhhhhhhhhccchhH
Confidence 455666778888888864
No 251
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=36.69 E-value=1.8e+02 Score=28.03 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 143 TQLFEAVAELQEILDLQDAKQKIAREIK---AKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 143 tqL~eAV~ELQE~l~lQ~eIq~Lk~EIe---~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
+-|-.+++-++..++++....++..=.. --|..|++|+..-|+.|..|..+|.+.+.|+.
T Consensus 77 ALLrRavedIrR~~klre~k~~l~~L~q~GsIGDd~wqrf~~aeKe~E~El~eVv~EAn~l~p 139 (190)
T PF09802_consen 77 ALLRRAVEDIRRIIKLREDKPALNKLYQNGSIGDDLWQRFQRAEKEMEEELKEVVQEANALKP 139 (190)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3466778888888888776666555443 34999999999999999999999998887743
No 252
>PRK15396 murein lipoprotein; Provisional
Probab=36.65 E-value=2.5e+02 Score=23.67 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
..+..++.+|..++...-..+..-..+-..|-+.||+.+.-|
T Consensus 35 ~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 35 QTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344667777788888777778887788888888999988653
No 253
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.53 E-value=1.4e+02 Score=30.02 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 153 QEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 153 QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++.-++|++.++|+.||+..+..+..+.+.--+.+..|++
T Consensus 57 ~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~ 96 (247)
T COG3879 57 KELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALED 96 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 3334446777777777777777776666333334444444
No 254
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.52 E-value=1.4e+02 Score=24.69 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAF 179 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~l 179 (420)
+++|+.|+.+|+.|-..+..|
T Consensus 58 ~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 58 EEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444
No 255
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=36.41 E-value=1.2e+02 Score=27.31 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 143 TQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 143 tqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
-++.++|.+.+|-. |.++++|+.||+..-..|.+.++++
T Consensus 75 ~~ik~~v~~~~e~~--q~~~~~l~~ei~~~~~~~sd~~k~~ 113 (115)
T COG4980 75 GEIKESVKKWKEDI--QPEIERLKSEIEDLQEAISDETKTE 113 (115)
T ss_pred HHHHHHHHHhHhhc--chhHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555443 3336667777766666666666554
No 256
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=35.92 E-value=77 Score=35.56 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=7.5
Q ss_pred HHHHhhhhhhh
Q 044000 268 EEQMRASQLYT 278 (420)
Q Consensus 268 EeeMRaG~L~~ 278 (420)
+.|++-|+|..
T Consensus 630 q~ei~~~~~~~ 640 (697)
T PF09726_consen 630 QLEIAQGQLRK 640 (697)
T ss_pred HHHHHHHHHHH
Confidence 66777777765
No 257
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=35.89 E-value=2.7e+02 Score=26.82 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044000 177 LAFANKIKEAERVLDIL 193 (420)
Q Consensus 177 ~~lakkLKeAE~~Ld~~ 193 (420)
..|.+.|++|++.|+.+
T Consensus 123 ~~l~~~l~ea~~mL~em 139 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEM 139 (264)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555777777777765
No 258
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=35.62 E-value=2e+02 Score=27.00 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=14.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 167 REIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 167 ~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.+++.....+.....+|+.++..|+.+-
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 102 ADLDDAKAAVEAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555655555555543
No 259
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.61 E-value=1.8e+02 Score=31.71 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHH---HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQ---LFEAVAELQE----------------ILDLQDAKQKIAREIKAKDSAILAFANKIKE 185 (420)
Q Consensus 130 s~keil~lf~s~Qtq---L~eAV~ELQE----------------~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKe 185 (420)
..|++-+-+..+..+ |.+-.+.|++ +.++++++++|+.|+...-..|.+++++|+.
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 260
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.42 E-value=2.2e+02 Score=24.31 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=2.9
Q ss_pred HHhhHHHH
Q 044000 138 FTSLQTQL 145 (420)
Q Consensus 138 f~s~QtqL 145 (420)
|+.+....
T Consensus 6 ~ekLE~Ki 13 (79)
T COG3074 6 FEKLEAKV 13 (79)
T ss_pred HHHHHHHH
Confidence 33333333
No 261
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=35.36 E-value=2.7e+02 Score=27.14 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
..+++++..++..++..+.++.+++..+.+.+..-
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E 168 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCE 168 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555443
No 262
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=35.35 E-value=1.4e+02 Score=31.92 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
|.++.++++++...+..-.+.-+.|..+.++++.+
T Consensus 40 qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel 74 (522)
T PF05701_consen 40 QEELAKLKEQLEAAEREKAQALSELESAKRTVEEL 74 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555554443
No 263
>PLN02320 seryl-tRNA synthetase
Probab=35.24 E-value=1.4e+02 Score=32.54 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 162 KQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+++|.+|+.+..+.|..+..+|++.+..|..++
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666777777777777777666655
No 264
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.22 E-value=74 Score=25.57 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
+..|..|+.||......|..-......|+.
T Consensus 27 ~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 27 EERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555555555555444444444444443
No 265
>PRK14153 heat shock protein GrpE; Provisional
Probab=35.07 E-value=63 Score=31.03 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=7.1
Q ss_pred CCCCCCCCCCC
Q 044000 348 PPGWKPGDAVP 358 (420)
Q Consensus 348 PpgWKpGDPi~ 358 (420)
=.||+-||-|-
T Consensus 168 qkGY~l~dRVL 178 (194)
T PRK14153 168 KPGYALNSKVI 178 (194)
T ss_pred eCCcEeCCEEe
Confidence 35777777664
No 266
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=35.02 E-value=1.2e+02 Score=29.02 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
++.+..|+.....-|..|..+-.+|++|...++.+-..|.
T Consensus 77 er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~ 116 (237)
T PF00261_consen 77 ERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYE 116 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666677777777777776666654443
No 267
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=34.50 E-value=2.3e+02 Score=24.88 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
++.+.=..|....+.--+.--.-+|..+|++-+++|++||..+.+.|.++.++|
T Consensus 46 sir~ag~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 46 SIRAAGGAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCCccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444556555544322222222333334444444444444666666555554
No 268
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.48 E-value=1.8e+02 Score=35.19 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=37.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 135 IACFTSLQTQLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 135 l~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
|++|.++++++..+|.+++..+.. +..++..+.+|......|..+-.++++++..|..+.
T Consensus 509 l~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~ 569 (1293)
T KOG0996|consen 509 LDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR 569 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence 568889999999999999988766 333444444444444444444444444444444433
No 269
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.47 E-value=2.5e+02 Score=28.63 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=31.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 145 LFEAVAELQE-ILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 145 L~eAV~ELQE-~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
|-+...++++ .+.+|++...|.+|.+++.......+.+||+.+..+..+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 233477778888888888888777777777776655443
No 270
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.40 E-value=69 Score=30.24 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=11.7
Q ss_pred HHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHH
Q 044000 137 CFTSLQTQLFEAVAEL----QEILDLQDAKQKIAREIKAKDSAI 176 (420)
Q Consensus 137 lf~s~QtqL~eAV~EL----QE~l~lQ~eIq~Lk~EIe~kD~~I 176 (420)
-|+++=.+-+|....| +|.-.|+-+.|+|+.|++.....+
T Consensus 4 D~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544444433 333334444555555555444444
No 271
>PRK14150 heat shock protein GrpE; Provisional
Probab=34.31 E-value=60 Score=30.81 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=5.7
Q ss_pred HHhhhhccccc
Q 044000 192 ILVDDYSDYRR 202 (420)
Q Consensus 192 ~~VdD~~~yqa 202 (420)
++..|+.+|++
T Consensus 63 R~~AefeN~rk 73 (193)
T PRK14150 63 RARAEVENIRR 73 (193)
T ss_pred HHHHHHHHHHH
Confidence 34445555654
No 272
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.25 E-value=1.4e+02 Score=25.79 Aligned_cols=22 Identities=5% Similarity=-0.076 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH
Q 044000 155 ILDLQDAKQKIAREIKAKDSAI 176 (420)
Q Consensus 155 ~l~lQ~eIq~Lk~EIe~kD~~I 176 (420)
..+++++++.+++|+++.....
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n 50 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARN 50 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 273
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=34.18 E-value=1.8e+02 Score=27.37 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHhhHHH
Q 044000 133 EIIACFTSLQTQLFEAVAELQE---I-LDLQDAKQKIAREIKAKDSAI 176 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~ELQE---~-l~lQ~eIq~Lk~EIe~kD~~I 176 (420)
++...|...|.+||..-.++-- . .--+..++.|+++|....+.+
T Consensus 49 ~~~~~L~~iQ~~Lf~l~~~la~~~~~~~i~~~~v~~LE~~id~~~~~l 96 (171)
T TIGR00636 49 DLKEDLERIQNDLFDIGGDLATPGDTKKITEEDVKWLEERIDQYRKEL 96 (171)
T ss_pred HHHHHHHHHHHHHHHHhHHhcCCCcccCcCHHHHHHHHHHHHHHHhhC
Confidence 4556788899999998888762 1 112555666777766665544
No 274
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=34.17 E-value=1.7e+02 Score=32.42 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=13.2
Q ss_pred HHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 044000 137 CFTSLQTQLFEAVA--ELQEILDLQDAKQKIARE 168 (420)
Q Consensus 137 lf~s~QtqL~eAV~--ELQE~l~lQ~eIq~Lk~E 168 (420)
||++.|--|--|.. ++||. ++|.|+..|+.|
T Consensus 504 ll~niq~llkva~dnar~qek-Qiq~Ek~ELkmd 536 (641)
T KOG3915|consen 504 LLTNIQGLLKVAIDNARAQEK-QIQLEKTELKMD 536 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55555554443332 22322 234444444443
No 275
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.16 E-value=1.2e+02 Score=24.47 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=20.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhHH
Q 044000 149 VAELQEILDL-QDAKQKIAREIKAKDSA 175 (420)
Q Consensus 149 V~ELQE~l~l-Q~eIq~Lk~EIe~kD~~ 175 (420)
|.||+++..+ +.+|.+++.+|..|...
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665544 99999999999988654
No 276
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=34.15 E-value=3.3e+02 Score=26.19 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=26.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 137 CFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.++..+.+|..+..++.. ++..+..++.+++..+..+.....+|+.++..+++
T Consensus 81 ~l~~a~a~l~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r 133 (334)
T TIGR00998 81 ALAKAEANLAALVRQTKQ---LEITVQQLQAKVESLKIKLEQAREKLLQAELDLRR 133 (334)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444555444443322 24444455555555555555555555555555544
No 277
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.13 E-value=2.1e+02 Score=34.04 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 152 LQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 152 LQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
-|.||++++++++.+.|+++..+.-..+.+++..+|..++.+=
T Consensus 395 k~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 395 KQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888777788888888888777654
No 278
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=34.01 E-value=3.6e+02 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=14.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 168 EIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 168 EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
..+..++.|..+-..|..++..|..+.
T Consensus 74 ~~E~l~rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 74 NAEQLNRRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544
No 279
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=33.77 E-value=1.1e+02 Score=26.42 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 145 LFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 145 L~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
-.+-..++.|-..|+.+|..+.+.....|..+..+...-.+-+.+- .++++|.
T Consensus 14 k~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~ 66 (101)
T PF07303_consen 14 KAEFNDDYDEYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYN 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHH
Confidence 3445678888899999999999999999999999999888888887 8888765
No 280
>PRK14144 heat shock protein GrpE; Provisional
Probab=33.74 E-value=43 Score=32.31 Aligned_cols=9 Identities=44% Similarity=0.700 Sum_probs=4.8
Q ss_pred CCCCCCCCC
Q 044000 349 PGWKPGDAV 357 (420)
Q Consensus 349 pgWKpGDPi 357 (420)
.||+-||-|
T Consensus 180 kGY~l~dRV 188 (199)
T PRK14144 180 KGYKLSDRV 188 (199)
T ss_pred CCcEECCEE
Confidence 455555544
No 281
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=33.60 E-value=1.3e+02 Score=28.56 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+.++.+++..+++|+..........+.|+++++.|..+
T Consensus 35 ~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 72 (177)
T PF03234_consen 35 QARHERREERKQEIEELKYERKINEKLLKRIQKLLSAL 72 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555566666666666666666666666654
No 282
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=33.49 E-value=1.8e+02 Score=31.85 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHhhhhhhccc
Q 044000 74 PRAQALLLQMASLASKLFEVS 94 (420)
Q Consensus 74 ~raq~ll~~ma~las~lfe~s 94 (420)
++-|.|-.+++.|-.++.+++
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~ 308 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLS 308 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777766666654
No 283
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=33.49 E-value=2.1e+02 Score=31.13 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 175 AILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 175 ~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
.+..+.+++.+.+..|+.+.+++.
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~ 622 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWL 622 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888887765544
No 284
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=33.48 E-value=2.7e+02 Score=31.05 Aligned_cols=8 Identities=38% Similarity=0.575 Sum_probs=5.1
Q ss_pred eeeeeeec
Q 044000 391 QVRHVELD 398 (420)
Q Consensus 391 qv~~v~ld 398 (420)
.++.|.||
T Consensus 638 ~~~~vTld 645 (1164)
T TIGR02169 638 KYRMVTLE 645 (1164)
T ss_pred CCcEEEeC
Confidence 34567777
No 285
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=33.42 E-value=1.4e+02 Score=26.05 Aligned_cols=11 Identities=27% Similarity=0.305 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 044000 161 AKQKIAREIKA 171 (420)
Q Consensus 161 eIq~Lk~EIe~ 171 (420)
+++.|+++|.+
T Consensus 87 ~~~~l~~~i~~ 97 (133)
T cd04787 87 RLAETERRIKE 97 (133)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 286
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=33.39 E-value=2.7e+02 Score=22.78 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
.+..|..-+..+...+.++..--+.-.+.+.
T Consensus 35 d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~ 65 (143)
T PF05130_consen 35 DIDELEELVEEKQELLEELRELEKQRQQLLA 65 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444444443333333333
No 287
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.33 E-value=3.4e+02 Score=24.66 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
-.++.++...+..|++....=.=+.+.+++||+-|..++
T Consensus 70 s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nLrell 108 (114)
T KOG3501|consen 70 SHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNLRELL 108 (114)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666667777777777777778888999999999887
No 288
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.33 E-value=3.2e+02 Score=23.97 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=13.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQE 154 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE 154 (420)
++|...|..+..+|-+...++.+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~ 26 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEE 26 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666555555533
No 289
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=33.11 E-value=2.3e+02 Score=31.56 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=5.3
Q ss_pred HHHHHHHhhHHHH
Q 044000 133 EIIACFTSLQTQL 145 (420)
Q Consensus 133 eil~lf~s~QtqL 145 (420)
++..-++.++.+|
T Consensus 678 ~l~~~l~~l~~~l 690 (1164)
T TIGR02169 678 RLRERLEGLKREL 690 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 290
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.09 E-value=1.5e+02 Score=32.34 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 143 TQLFEAVAELQEILD-LQDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 143 tqL~eAV~ELQE~l~-lQ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
.+|.+.+++++..++ +.++.+.++++|++++..+.+|..++
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345555555532221 23677778888888888888888887
No 291
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=33.06 E-value=1.8e+02 Score=29.42 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+.+....++-++-.+..+..+.++|+++|..|..
T Consensus 163 ~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 163 ELKVEPAQKAALWFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666677777777777777777777666
No 292
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=33.02 E-value=5e+02 Score=25.82 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 151 ELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 151 ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.+....++++|-++|++|+.+.....+.....|+.=-+.|..++
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555666677777766665555544433444444455554
No 293
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.96 E-value=1.3e+02 Score=25.06 Aligned_cols=34 Identities=12% Similarity=0.280 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++++..|+++++..+..|..+.+++.+.+..|..
T Consensus 93 ~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 93 KKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666666555554
No 294
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=32.90 E-value=3.7e+02 Score=29.04 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
+..+.++++.|...+..|..+..+.++=...|..+|+
T Consensus 86 ~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~ 122 (420)
T COG4942 86 ADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLA 122 (420)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777888888888888888777778888774
No 295
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=32.79 E-value=1.8e+02 Score=33.88 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=55.7
Q ss_pred cCcccccccCCCCCCCCCCCCCchhHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HH
Q 044000 106 GSLPTFLSSQAQSQPPPPIDSSPSTIKEIIACFTSLQ--TQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILA---FA 180 (420)
Q Consensus 106 gslptfl~s~~~~~~~~p~~~~~~s~keil~lf~s~Q--tqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~---la 180 (420)
+-|..|..+.+ ....+|.++.|+..+ .+|..+...++++++.-+-.++|.++||+|.+.-.. +.
T Consensus 251 ~~LaD~~aai~-----------~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~ki~k~vE~k~~~~~r~ylL~ 319 (906)
T KOG2004|consen 251 IKLADFGAAIS-----------GAEFHELQEVLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKIKQDHREYLLR 319 (906)
T ss_pred hHHHHHHHHHh-----------ccCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Confidence 34556666655 246788888887654 568889999988888877778888888877665444 77
Q ss_pred HHHHHHHHHHHH
Q 044000 181 NKIKEAERVLDI 192 (420)
Q Consensus 181 kkLKeAE~~Ld~ 192 (420)
.|||...+.|..
T Consensus 320 eQlk~IKkeLg~ 331 (906)
T KOG2004|consen 320 EQLKAIKKELGI 331 (906)
T ss_pred HHHHHHHHhhCC
Confidence 788888887763
No 296
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=32.75 E-value=1.3e+02 Score=31.40 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHhhhhc
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAE---RVLDILVDDYS 198 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE---~~Ld~~VdD~~ 198 (420)
.+|++++.|+++|.+....+.-..++|+=|+ ..|+.++||.+
T Consensus 179 LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 179 LLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3488888888888888888888888888776 36777777643
No 297
>PRK10698 phage shock protein PspA; Provisional
Probab=32.65 E-value=1.4e+02 Score=28.63 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
.++.+++..+..++.....+..+.++|.+++.--..++-.+.
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666777777777778888777777775443
No 298
>COG5293 Predicted ATPase [General function prediction only]
Probab=32.62 E-value=2.2e+02 Score=31.64 Aligned_cols=69 Identities=17% Similarity=0.284 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--Hhhhhc
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILD------LQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI--LVDDYS 198 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~------lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~--~VdD~~ 198 (420)
=-.||.-+|...=.+=++.|.++...+- +|.+|.+|++.+.+++..++.+-+++.+.=++|.+ ++++|.
T Consensus 306 ~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~ 382 (591)
T COG5293 306 LYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQ 382 (591)
T ss_pred HHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555666666666777776654433 39999999999999999999999999999988876 555543
No 299
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=32.62 E-value=1.6e+02 Score=27.02 Aligned_cols=13 Identities=0% Similarity=-0.015 Sum_probs=6.1
Q ss_pred CChHHHHHHHhhh
Q 044000 229 LNLSDILSYAHRI 241 (420)
Q Consensus 229 V~~eDLIsYAHRI 241 (420)
|+.++.+..+|.+
T Consensus 116 V~~~~w~~l~~~~ 128 (172)
T cd04790 116 VTKEKWVAILKAA 128 (172)
T ss_pred CCHHHHHHHHHHc
Confidence 4444444444443
No 300
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.59 E-value=3.4e+02 Score=28.22 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
..++++++......+.+.++.++|++.+..|...
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666777777777777666666654
No 301
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=32.58 E-value=23 Score=32.58 Aligned_cols=16 Identities=56% Similarity=1.250 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCCCCC
Q 044000 347 PPPGWKPGDAVPLPPL 362 (420)
Q Consensus 347 pPpgWKpGDPi~lpp~ 362 (420)
-|.+|++||.+-.||.
T Consensus 163 ~p~~w~~g~~~~~~~~ 178 (203)
T cd03016 163 TPANWKPGDDVIVPPS 178 (203)
T ss_pred cCCCCCCCCceecCCC
Confidence 3556666666665443
No 302
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.50 E-value=2.3e+02 Score=23.82 Aligned_cols=49 Identities=10% Similarity=0.237 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 145 LFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 145 L~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
++..|...-...+....+..|+..++..+..|..+.+++++-+.-+..+
T Consensus 48 vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 48 VYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334455566666666666666666666666666665553
No 303
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=32.47 E-value=3.5e+02 Score=28.01 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=51.9
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEI----LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~----l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
.-..++-+.+||..+.+.|.-|..-=|.. .++..+...|++++......|.++.-.|.--...|...
T Consensus 60 ty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~y 130 (306)
T PF04849_consen 60 TYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIY 130 (306)
T ss_pred chhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678889999999998877766543443 44477788899999999999999999888777776663
No 304
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=32.46 E-value=2.3e+02 Score=29.21 Aligned_cols=19 Identities=5% Similarity=0.249 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044000 174 SAILAFANKIKEAERVLDI 192 (420)
Q Consensus 174 ~~I~~lakkLKeAE~~Ld~ 192 (420)
..+.++.++|...++.++.
T Consensus 273 ~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 273 NKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 305
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=32.44 E-value=3.1e+02 Score=31.92 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=37.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQE-ILDLQDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE-~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
+.+++.+...+..|.+..+.|.. .-++...+++|..|++++.+.|.++.++|.+.+
T Consensus 732 ~~A~~~~~~~~~~l~~~a~~L~~~~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~ 788 (900)
T PRK13902 732 DAAVEYIQELEDLLKEAAEILGVPPEQLPKTVERFFEEWKEQKKEIEKLRKELAELL 788 (900)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666555542 224567788888888888888888888774433
No 306
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=32.34 E-value=2.2e+02 Score=27.50 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=17.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 166 AREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 166 k~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
++.+..+...+..+..+++.++..|+.+=.+|.+|+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~ 125 (327)
T TIGR02971 89 ARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRS 125 (327)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555554444444433
No 307
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=32.31 E-value=2.4e+02 Score=33.24 Aligned_cols=51 Identities=10% Similarity=0.168 Sum_probs=21.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 133 EIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
|.+.-|...+..|+++....+..+.. ++.|..++++..+++..|.++.++.
T Consensus 431 ek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~ 482 (980)
T KOG0980|consen 431 EKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAA 482 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433333322 3444445555555555444444433
No 308
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=32.13 E-value=24 Score=29.81 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=24.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 139 TSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 139 ~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
.+.++++.+.-.++.+....-..++.++++++..+..+..+.++|=
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP 47 (144)
T PF04350_consen 2 KTLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLP 47 (144)
T ss_dssp ----------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555555556655555566677777777777777777777773
No 309
>PRK12802 flagellin; Provisional
Probab=32.10 E-value=2.6e+02 Score=27.25 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHH
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILDL----------QDAKQKIAREIKAKDSAILAFAN 181 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l----------Q~eIq~Lk~EIe~kD~~I~~lak 181 (420)
...++.+.++.+..-+.-|.+....|+...++ ...+..|..||+.+-+.|..+++
T Consensus 64 ~~~n~~~~~s~l~~ad~~l~~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~ei~~l~~~i~~~an 128 (282)
T PRK12802 64 AIKNANDGISIAQTAEGALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIAT 128 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777666555 44566666666666666655555
No 310
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.03 E-value=1.6e+02 Score=32.52 Aligned_cols=47 Identities=9% Similarity=0.178 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 146 FEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 146 ~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
..++.+.--...++++.++.++-++-.++.+..+.++|.++|..|..
T Consensus 246 lN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~ 292 (726)
T PRK09841 246 LNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNV 292 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444556666666666777777777777777777776655
No 311
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=31.97 E-value=5e+02 Score=25.85 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+.+..+.+.......+..+..+|+.++..|+.+-
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 178 (370)
T PRK11578 145 DLDTAATELAVKQAQIGTIDAQIKRNQASLDTAK 178 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555543
No 312
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=31.96 E-value=1.8e+02 Score=27.79 Aligned_cols=81 Identities=19% Similarity=0.330 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHhh------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044000 128 PSTIKEIIACFTSL------------------QTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERV 189 (420)
Q Consensus 128 ~~s~keil~lf~s~------------------QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~ 189 (420)
...++++|.||+.= ..+|-+....++....++++++.+-+-|+++...--++.+++..|...
T Consensus 9 ~~~v~~~i~Ll~eG~TvPFIARYRKe~TG~Lde~~lR~i~~~~~~~~~L~~Rk~~il~~i~eqgkLt~eL~~~I~~a~tl 88 (193)
T PF09371_consen 9 PKQVENVIKLLDEGNTVPFIARYRKEMTGGLDEVQLREIQDRYEYLRELEKRKESILKSIEEQGKLTPELKQAIENATTL 88 (193)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHH-HHHHTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHH--SH
T ss_pred HHHHHHHHHHHhCCCCcchhhhhhhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHhcCCH
Confidence 45677777777641 345667777777778889999999999999999999999999988743
Q ss_pred HHHHhhhhcccccccccccC
Q 044000 190 LDILVDDYSDYRRPKRVKSE 209 (420)
Q Consensus 190 Ld~~VdD~~~yqa~KRlKs~ 209 (420)
..+=|=|.-|+.|||.+..
T Consensus 89 -~elEdlY~PyK~kr~T~A~ 107 (193)
T PF09371_consen 89 -QELEDLYLPYKPKRKTRAT 107 (193)
T ss_dssp -HHHHHHHGGGS---S-HHH
T ss_pred -HHHHHHHhhhccCcCCHHH
Confidence 2222336667776665553
No 313
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.79 E-value=1.9e+02 Score=30.02 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=53.9
Q ss_pred CCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhhHHHHHHHHH
Q 044000 121 PPPIDSSPSTIKEIIACFTSLQTQLFEAVAELQEILDL------------------QDAKQKIAREIKAKDSAILAFANK 182 (420)
Q Consensus 121 ~~p~~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l------------------Q~eIq~Lk~EIe~kD~~I~~lakk 182 (420)
-+||-.--..|+-+-..|...+.+|.+...|..+.--. |-+...-++||.....+|..+-+.
T Consensus 60 LTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 60 LTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37889888999888888888888888888776553221 444455667777777777778888
Q ss_pred HHHHHHHHHHHh
Q 044000 183 IKEAERVLDILV 194 (420)
Q Consensus 183 LKeAE~~Ld~~V 194 (420)
|.+...-+..-.
T Consensus 140 L~ekDkGiQKYF 151 (305)
T PF15290_consen 140 LAEKDKGIQKYF 151 (305)
T ss_pred hchhhhhHHHHH
Confidence 877766666643
No 314
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=31.64 E-value=16 Score=39.53 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 044000 174 SAILAFANKIKEAE 187 (420)
Q Consensus 174 ~~I~~lakkLKeAE 187 (420)
+.+....++|.|.|
T Consensus 383 ErL~~S~rkLeEyE 396 (495)
T PF12004_consen 383 ERLRMSHRKLEEYE 396 (495)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 315
>PRK14163 heat shock protein GrpE; Provisional
Probab=31.61 E-value=49 Score=32.32 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCC
Q 044000 347 PPPGWKPGDAVPL 359 (420)
Q Consensus 347 pPpgWKpGDPi~l 359 (420)
.=.||+-||-|-=
T Consensus 167 ~qkGY~l~~RVLR 179 (214)
T PRK14163 167 LQPGYRIGERTIR 179 (214)
T ss_pred eeCCcCcCCEecc
Confidence 3457888887653
No 316
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.46 E-value=3.3e+02 Score=27.57 Aligned_cols=17 Identities=41% Similarity=0.391 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhhhhcc
Q 044000 77 QALLLQMASLASKLFEV 93 (420)
Q Consensus 77 q~ll~~ma~las~lfe~ 93 (420)
+.|..++..+-.+|-++
T Consensus 257 ~~l~~~l~~le~~l~~l 273 (444)
T TIGR03017 257 QNLKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666666666655
No 317
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.32 E-value=1.8e+02 Score=24.62 Aligned_cols=7 Identities=57% Similarity=0.577 Sum_probs=3.2
Q ss_pred hhhcccC
Q 044000 89 KLFEVSP 95 (420)
Q Consensus 89 ~lfe~s~ 95 (420)
++|.||+
T Consensus 8 ~~~gvs~ 14 (123)
T cd04770 8 KAAGVSP 14 (123)
T ss_pred HHHCcCH
Confidence 3444444
No 318
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=31.29 E-value=1.8e+02 Score=21.99 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDL 158 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~l 158 (420)
...+|+.-|++-+.-|-++++.+++=.++
T Consensus 7 ~Le~Iv~~Le~~~~sLdes~~lyeeg~~l 35 (53)
T PF02609_consen 7 RLEEIVEKLESGELSLDESLKLYEEGMEL 35 (53)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45666777777776677776666555333
No 319
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.24 E-value=1.7e+02 Score=24.57 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=10.0
Q ss_pred hhhhcccCCcc-hhhhhcccCcc
Q 044000 88 SKLFEVSPNRS-LWISAFRGSLP 109 (420)
Q Consensus 88 s~lfe~s~nr~-~w~~~~rgslp 109 (420)
+++|.||+.-= .|- =.|-|+
T Consensus 7 a~~~gvs~~tlr~ye--~~gll~ 27 (113)
T cd01109 7 AEKTGLSADTLRYYE--KEGLLP 27 (113)
T ss_pred HHHHCcCHHHHHHHH--HCCCCC
Confidence 45666666432 232 246664
No 320
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=31.21 E-value=82 Score=26.29 Aligned_cols=7 Identities=29% Similarity=0.634 Sum_probs=3.5
Q ss_pred hhhcccC
Q 044000 89 KLFEVSP 95 (420)
Q Consensus 89 ~lfe~s~ 95 (420)
++|.||+
T Consensus 8 ~~~gvs~ 14 (99)
T cd04772 8 RAIGLSP 14 (99)
T ss_pred HHHCcCH
Confidence 3555554
No 321
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=31.16 E-value=48 Score=27.47 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
++.+++++|++++...+..|-++....=+.+.-..++|.-++.|-+
T Consensus 6 ~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~GNiikGfd~y~k 51 (80)
T PF09340_consen 6 ELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYGNIIKGFDGYLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCeeChhhhhc
Confidence 3466667777777777888888887777788888889888888844
No 322
>PRK14155 heat shock protein GrpE; Provisional
Probab=31.11 E-value=40 Score=32.54 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCCCCCcccccccCCChHHHHHHH
Q 044000 168 EIKAKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRVKSEGGDGNDDDSGSCSTTVESRLNLSDILSYA 238 (420)
Q Consensus 168 EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KRlKs~~~~~~~e~~~~~~~A~~~~V~~eDLIsYA 238 (420)
+.+.....|..+.+++++.+..+-++..|+.+|++ |.+.. .+++.+||
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RK--R~~kE---------------------~e~~~~~a 61 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAENTKR--RAERE---------------------MNDARAYA 61 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---------------------HHHHHHHH
No 323
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=31.11 E-value=2.2e+02 Score=31.24 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRRPKR 205 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KR 205 (420)
..||+.-|+.+|++|-..-++=++ ++.+|.+ +....-.+++|+..|.++.+.++.+--.-.+|++|||
T Consensus 403 dDEvlaeLR~lqaeLk~vS~~N~k------~k~~Ll~-la~eE~a~qe~~q~lddlDkqI~qaYvKr~r~~kkrK 470 (516)
T KOG4191|consen 403 DDEVLAELRKLQAELKAVSAHNRK------KKHDLLR-LAPEEMARQEFQQVLDDLDKQIEQAYVKRNRSRKKRK 470 (516)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566666666666666544333322 2222221 1122334566777777776666665434445666444
No 324
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.06 E-value=1.2e+02 Score=29.27 Aligned_cols=46 Identities=9% Similarity=0.093 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 151 ELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 151 ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
|-..+.+.++++.+|+..++++...|.++.+.+.+.+..|.....+
T Consensus 97 e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~e 142 (181)
T KOG3335|consen 97 ERKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESE 142 (181)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 3333566678888888888888888888888888887666665433
No 325
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=31.02 E-value=2e+02 Score=28.58 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhhh
Q 044000 185 EAERVLDILVDDY 197 (420)
Q Consensus 185 eAE~~Ld~~VdD~ 197 (420)
=+|..|+++|++.
T Consensus 73 wGE~~Le~iLe~~ 85 (304)
T PF02646_consen 73 WGEMQLERILEDS 85 (304)
T ss_pred HHHHHHHHHHHHc
Confidence 3678888887663
No 326
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=30.93 E-value=3.1e+02 Score=22.72 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=9.1
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 044000 137 CFTSLQTQLFEAVAELQEI 155 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~ 155 (420)
+|..+|.+|..--.++++.
T Consensus 18 vl~~LqDE~~hm~~e~~~L 36 (79)
T PF06657_consen 18 VLKALQDEFGHMKMEHQEL 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555544444444333
No 327
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=30.91 E-value=3.6e+02 Score=31.14 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=37.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEI-LDLQDAKQKIAREIKAKDSAILAFANKIKE 185 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~-l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKe 185 (420)
+.+++.+...+..|.+....|... -++..++++|..|+.++.+.+.++.++|.+
T Consensus 697 ~~A~~~~~~~~~~l~~l~~~L~~~~~~i~~~v~~l~~e~k~l~k~~~~l~~~l~~ 751 (851)
T TIGR00344 697 NAAIEYLNEQEDKLKELADILKVTPNELPKKIERFFEEWKALQKELESLKLKIAD 751 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777766666666655532 245677888888888888888888887754
No 328
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.82 E-value=2.2e+02 Score=33.70 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 155 ILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 155 ~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
..+++.++..|..+++.....|..+..+|...+..|..+..++.
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34445666666666666666666666666666666655554443
No 329
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=30.76 E-value=2.9e+02 Score=24.18 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 141 LQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 141 ~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++.++.++-.||....++.+-=..|...++....++..+...-...-.+|.+
T Consensus 2 l~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~N 53 (103)
T PF08654_consen 2 LQARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLAN 53 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 4677888888888887777777777777777777776666655555555554
No 330
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=30.64 E-value=3.4e+02 Score=26.62 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=59.6
Q ss_pred hhcccCCcchhhhhcccCcccccccCCCCCCCCCCCCCchhHHHHHH---------------HHHhhH-HHHHHHHHHHH
Q 044000 90 LFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKEIIA---------------CFTSLQ-TQLFEAVAELQ 153 (420)
Q Consensus 90 lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~keil~---------------lf~s~Q-tqL~eAV~ELQ 153 (420)
||==|-+| -||||.=--|.+++.... +++--+++. ||=+++ -.-...|.|+-
T Consensus 61 LFiDS~~R-----v~rv~~~~nl~~a~~n~~-------~~~~i~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml 128 (192)
T COG5374 61 LFIDSWKR-----VYRVSKEANLYSASINNY-------AVTRIAVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEML 128 (192)
T ss_pred HHHHHhHH-----hhhhhhhhhhcccccccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556555 577777666877764221 333333332 111111 22445667776
Q ss_pred HHH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 154 EIL--------DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 154 E~l--------~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
|.+ +.+.....|++++++++..+.+++||.++-+..+|.
T Consensus 129 ~~~~~~~~k~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~ 175 (192)
T COG5374 129 EENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDK 175 (192)
T ss_pred HHhhhcccchhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 666 347777889999999999999999999998888887
No 331
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.63 E-value=1.7e+02 Score=24.98 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 158 LQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++..++.++.+|+.....+..+...+.+-+..+++
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~ 38 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKET 38 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555666555555555554
No 332
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.53 E-value=2e+02 Score=25.14 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 141 LQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 141 ~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
++.+|.+.+.+||. +++++..-+..+..+..++++++.+++.+
T Consensus 5 ~~~~~q~~~~~~q~----------lq~~l~~~~~q~~~le~q~~e~~~~~~EL 47 (121)
T PRK09343 5 IPPEVQAQLAQLQQ----------LQQQLERLLQQKSQIDLELREINKALEEL 47 (121)
T ss_pred hhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555533 34444444555556666666666666553
No 333
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.50 E-value=2.7e+02 Score=23.90 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=13.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044000 136 ACFTSLQTQLFEAVAELQEILDLQDAKQKIAR 167 (420)
Q Consensus 136 ~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~ 167 (420)
.+|+.+.+....||... .-+|-+|+.|+.
T Consensus 4 EvleqLE~KIqqAvdtI---~LLqmEieELKe 32 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTI---TLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45555555555555443 223444444443
No 334
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.48 E-value=89 Score=26.05 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=48.8
Q ss_pred hhhhhcccCCc-chhhhhcccCcccccccCCCCCCCCCCCCCchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 044000 87 ASKLFEVSPNR-SLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKEIIA--CFTSLQTQLFEAVAELQEILDLQDAKQ 163 (420)
Q Consensus 87 as~lfe~s~nr-~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~keil~--lf~s~QtqL~eAV~ELQE~l~lQ~eIq 163 (420)
+++++.||+.- -.|.. .|-++.- . ..-..---+.+++-. .+..++..+-=-++++++.+++.++++
T Consensus 7 va~~~gVs~~tLR~ye~--~Gli~p~---r------~~~g~R~Ys~~dv~~l~~I~~L~~~~G~~l~~i~~~l~l~~~~~ 75 (98)
T cd01279 7 AAELLGIHPQTLRVYDR--LGLVSPA---R------TNGGGRRYSNNDLELLRQVQRLSQDEGFNLAGIKRIIELYPQVL 75 (98)
T ss_pred HHHHHCcCHHHHHHHHH--CCCCCCC---c------CCCCCeeECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhhHHH
Confidence 45677777643 34543 5655331 1 111333344444433 333333333334566777788888888
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 044000 164 KIAREIKAKDSAILAFAN 181 (420)
Q Consensus 164 ~Lk~EIe~kD~~I~~lak 181 (420)
.+++++.+....|.+++|
T Consensus 76 ~l~~~~~~~~~~~~~~~~ 93 (98)
T cd01279 76 LLQCRSCEHATELIGCAK 93 (98)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 898888888888888775
No 335
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.39 E-value=5.3e+02 Score=26.09 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=7.0
Q ss_pred CCCcHHHHhhhhhh
Q 044000 264 PAPQEEQMRASQLY 277 (420)
Q Consensus 264 PaPQEeeMRaG~L~ 277 (420)
+|.+-+-+|.|.|.
T Consensus 149 ~fGTINGlRLGrl~ 162 (314)
T PF04111_consen 149 PFGTINGLRLGRLP 162 (314)
T ss_dssp TEEEETTEEE--BT
T ss_pred CeeeECCeeeccCC
Confidence 56666666666543
No 336
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=30.38 E-value=6e+02 Score=27.15 Aligned_cols=17 Identities=29% Similarity=0.086 Sum_probs=10.9
Q ss_pred hccCCCchHHHHHHHHH
Q 044000 67 LSLLPPLPRAQALLLQM 83 (420)
Q Consensus 67 l~llppl~raq~ll~~m 83 (420)
..+-|..--+.+||-|+
T Consensus 154 ~f~~p~nfd~~~lLgq~ 170 (407)
T PF04625_consen 154 SFFNPSNFDASSLLGQA 170 (407)
T ss_pred cccCccccchhhhhhcc
Confidence 34446666777777765
No 337
>PRK04863 mukB cell division protein MukB; Provisional
Probab=30.35 E-value=2.8e+02 Score=34.05 Aligned_cols=12 Identities=8% Similarity=0.354 Sum_probs=6.2
Q ss_pred HHHHHHHhhhhc
Q 044000 232 SDILSYAHRISY 243 (420)
Q Consensus 232 eDLIsYAHRIS~ 243 (420)
.++..|-..|+.
T Consensus 411 ~el~q~qq~i~~ 422 (1486)
T PRK04863 411 TRAIQYQQAVQA 422 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 344555555543
No 338
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=30.28 E-value=2e+02 Score=22.46 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=8.1
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 044000 164 KIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 164 ~Lk~EIe~kD~~I~~lakkL 183 (420)
.+++||+..=..|..+.+++
T Consensus 42 ~~~~el~~l~~~i~~~~~~~ 61 (103)
T PF00804_consen 42 ELKRELDELTDEIKQLFQKI 61 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 339
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=30.09 E-value=4.1e+02 Score=32.05 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
.++...=+-+..++.+|-|+...| +++..+++.+++||..+...+.+|...-+.|.+.-+
T Consensus 177 velAdle~kir~LrqElEEK~enl---l~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrd 236 (1195)
T KOG4643|consen 177 VELADLEKKIRTLRQELEEKFENL---LRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRD 236 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344444455666777777777666 556888888888888888888777666655554433
No 340
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=30.07 E-value=3.2e+02 Score=22.56 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=14.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 165 IAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 165 Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
|+-+++.....+..+.+.|++|++.+
T Consensus 48 LKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 48 LKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555666665544
No 341
>PRK04406 hypothetical protein; Provisional
Probab=30.03 E-value=3.2e+02 Score=22.55 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+-++.-.+.-|++.+..|.+-++++..-++.|..+
T Consensus 17 E~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 17 ECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443333333333
No 342
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=29.97 E-value=1.5e+02 Score=25.76 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=11.6
Q ss_pred hhhhcccCCcchhhhhcccCcc
Q 044000 88 SKLFEVSPNRSLWISAFRGSLP 109 (420)
Q Consensus 88 s~lfe~s~nr~~w~~~~rgslp 109 (420)
++++.||.. ++|.=--.|-|+
T Consensus 7 a~~~gvs~~-tlR~Ye~~GLl~ 27 (127)
T TIGR02047 7 AQKTGVSVE-TIRFYEKQGLLP 27 (127)
T ss_pred HHHHCcCHH-HHHHHHHCCCCC
Confidence 355666654 444444567664
No 343
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.96 E-value=2.1e+02 Score=35.05 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 147 EAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 147 eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
+|-+.|+..+..-+.++.|+.+.+.....|..++.+|..-|..|+.++++.
T Consensus 1697 eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1697 EAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444555555666666666666666666666666666665443
No 344
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.83 E-value=2e+02 Score=30.08 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 044000 175 AILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 175 ~I~~lakkLKeAE~~Ld~~VdD 196 (420)
.+.++-++|++.|..+..+-++
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 74 EVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666655555443
No 345
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=29.80 E-value=2.1e+02 Score=30.65 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=8.3
Q ss_pred cHHHHhhhhhhhc
Q 044000 267 QEEQMRASQLYTF 279 (420)
Q Consensus 267 QEeeMRaG~L~~~ 279 (420)
.+.+.|...+.++
T Consensus 304 ~ele~RL~~l~~L 316 (563)
T TIGR00634 304 NEIEERLAQIKRL 316 (563)
T ss_pred HHHHHHHHHHHHH
Confidence 5667777776553
No 346
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=29.62 E-value=1.3e+02 Score=24.75 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 153 QEILDLQDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 153 QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
++..++.-++..|++|+..+...|.+.++.+
T Consensus 43 keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 43 KENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344456666667777777776666666554
No 347
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=29.61 E-value=4.1e+02 Score=25.33 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=13.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 168 EIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 168 EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+-+..|..|..+.......++.+.++-
T Consensus 153 ~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 153 KKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 348
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.55 E-value=2.6e+02 Score=28.26 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 141 LQTQLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 141 ~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
..++|..+-.+||+.-+. +.++..|+++++..|..|....+.|.
T Consensus 61 ~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 61 NHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred ChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888888887665 66677777777777777766665553
No 349
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=29.52 E-value=3e+02 Score=30.47 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=18.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044000 166 AREIKAKDSAILAFANKIKEAERVLDILVDDYSDY 200 (420)
Q Consensus 166 k~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~y 200 (420)
.+-+..++..+++++..+.-|++-|-.-.-++.+|
T Consensus 237 ~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~ 271 (554)
T KOG4677|consen 237 LKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQ 271 (554)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666665554433333333
No 350
>PRK10869 recombination and repair protein; Provisional
Probab=29.28 E-value=2.1e+02 Score=30.91 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAIL----AFANKIKEA 186 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~----~lakkLKeA 186 (420)
++.+|+..++..+++|.+...--....++++++.+++++....=..|. ..|++|..+
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~ 378 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQL 378 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 351
>PRK02119 hypothetical protein; Provisional
Probab=29.28 E-value=3.2e+02 Score=22.34 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 162 KQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
+.+-+++|....+.++.+..+|++.+
T Consensus 32 v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 32 LIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444444555555555543
No 352
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=29.17 E-value=2.1e+02 Score=26.61 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 153 QEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 153 QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
|+..+|+.++++++..|+.|-+.++++..|.. .+.++|
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~v----a~knLv 38 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQELILQQV----AFKNLV 38 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 45667788888888888888888888777654 455555
No 353
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=29.15 E-value=2.9e+02 Score=27.07 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 174 SAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 174 ~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
+.+..|++||++.|.-.+.++.+.
T Consensus 108 ~eV~~Y~~KL~eLE~kq~~L~rEN 131 (195)
T PF10226_consen 108 QEVAQYQQKLKELEDKQEELIREN 131 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 356778889999988888877653
No 354
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.11 E-value=53 Score=35.68 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 149 VAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 149 V~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
+..+|++.+|++++++|++++.+.+++|....+ +.+-.-|.
T Consensus 27 ~~~~qkie~L~kql~~Lk~q~~~l~~~v~k~e~--~s~~d~lk 67 (489)
T PF11853_consen 27 IDLLQKIEALKKQLEELKAQQDDLNDRVDKVEK--HSAGDNLK 67 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccccccchhhH--hhhcCcEE
Confidence 345667777888888999888888877755444 44544443
No 355
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=29.02 E-value=2.7e+02 Score=22.23 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCCCCCcccccccCCChHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRVKSEGGDGNDDDSGSCSTTVESRLNLSDILSYA 238 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KRlKs~~~~~~~e~~~~~~~A~~~~V~~eDLIsYA 238 (420)
-+-+..|.+.+++++-.=.++|+.|.-.+..+.++... +...++++.|++|+
T Consensus 17 ~~l~~~i~~~~~~~~ltQ~e~A~~lgisq~~vS~l~~g----------------------------~~~~~sl~~L~~~l 68 (80)
T PF13744_consen 17 AQLMAAIRELREERGLTQAELAERLGISQPRVSRLENG----------------------------KIDDFSLDTLLRYL 68 (80)
T ss_dssp HHHHHHHHHHHHCCT--HHHHHHHHTS-HHHHHHHHTT-----------------------------GCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCChhHHHHHHcC----------------------------cccCCCHHHHHHHH
Confidence 45566688888889888889999999888888887620 12347799999999
Q ss_pred hhhhc
Q 044000 239 HRISY 243 (420)
Q Consensus 239 HRIS~ 243 (420)
+++-+
T Consensus 69 ~aLG~ 73 (80)
T PF13744_consen 69 EALGG 73 (80)
T ss_dssp HHTTE
T ss_pred HHcCC
Confidence 99865
No 356
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.83 E-value=1.4e+02 Score=28.06 Aligned_cols=10 Identities=10% Similarity=0.511 Sum_probs=5.2
Q ss_pred chhHHHHHHH
Q 044000 128 PSTIKEIIAC 137 (420)
Q Consensus 128 ~~s~keil~l 137 (420)
..++||+|..
T Consensus 29 ~~~VKdvlq~ 38 (188)
T PF03962_consen 29 SMSVKDVLQS 38 (188)
T ss_pred hhhHHHHHHH
Confidence 3455665553
No 357
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=28.69 E-value=1.9e+02 Score=26.69 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+.+++.|+++|...+..|..| ..|...|.++
T Consensus 19 ~~qie~L~~~i~~l~~~~~e~----~~~~~tl~~l 49 (145)
T COG1730 19 QSQIESLQAQIAALNAAISEL----QTAIETLENL 49 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 666666666666555544433 3344444443
No 358
>PRK14147 heat shock protein GrpE; Provisional
Probab=28.69 E-value=52 Score=30.72 Aligned_cols=9 Identities=11% Similarity=0.372 Sum_probs=4.7
Q ss_pred CCCCCCCCC
Q 044000 349 PGWKPGDAV 357 (420)
Q Consensus 349 pgWKpGDPi 357 (420)
.||+-||-|
T Consensus 152 kGY~l~~Rv 160 (172)
T PRK14147 152 KGYLLNERL 160 (172)
T ss_pred CCcEeCCEe
Confidence 455555544
No 359
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=28.48 E-value=1.5e+02 Score=28.08 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHH
Q 044000 154 EILDLQDAKQKIAREIKAKDSAILAFANKI-----KEAERVLDIL 193 (420)
Q Consensus 154 E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkL-----KeAE~~Ld~~ 193 (420)
|.-+++.+|+.|++.+..|.+....|-++| .+-.+.|..-
T Consensus 37 EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg 81 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKG 81 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHH
Confidence 345568999999999999999998888884 5666666654
No 360
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=28.41 E-value=1.4e+02 Score=25.78 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=8.8
Q ss_pred hhhcccCCcchhhhhcccCcc
Q 044000 89 KLFEVSPNRSLWISAFRGSLP 109 (420)
Q Consensus 89 ~lfe~s~nr~~w~~~~rgslp 109 (420)
++|.||+. +++.=--+|-|+
T Consensus 8 ~~~gvs~~-tlR~Ye~~Gll~ 27 (126)
T cd04785 8 RRTGVNVE-TIRYYESIGLLP 27 (126)
T ss_pred HHHCcCHH-HHHHHHHCCCCC
Confidence 35555542 333333355554
No 361
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=28.39 E-value=1.8e+02 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
.++.++|++.+.-|.+.+..+..|..+.+++|.
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888888888888888888888888884
No 362
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=28.28 E-value=2.7e+02 Score=28.13 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=38.1
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHH
Q 044000 125 DSSPSTIKEIIACFTSLQTQLFEAVAELQEILDL----------QDAKQKIAREIKAKDSAILAFANK 182 (420)
Q Consensus 125 ~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l----------Q~eIq~Lk~EIe~kD~~I~~lakk 182 (420)
......+...++.+..-+.-|-+..+-||...++ ...+.+|++||+.+-+.|..+++.
T Consensus 60 ~q~~~n~~~g~s~lqtae~aL~~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei~~l~~el~~iant 127 (360)
T COG1344 60 SQAKDNAQDGISKLQTAEGALSEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELDNIANT 127 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666777777777777777777766655 456666777776666666665554
No 363
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=28.25 E-value=4.6e+02 Score=27.25 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=17.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 168 EIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 168 EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
-+.+|..+|++++++|..++..-.
T Consensus 188 vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 188 VLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhcccc
Confidence 345677888888888888886433
No 364
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=28.20 E-value=1.4e+02 Score=25.83 Aligned_cols=9 Identities=33% Similarity=0.494 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 044000 162 KQKIAREIK 170 (420)
Q Consensus 162 Iq~Lk~EIe 170 (420)
++.|+++|+
T Consensus 88 ~~~l~~~i~ 96 (127)
T TIGR02044 88 VAEIERKIS 96 (127)
T ss_pred HHHHHHHHH
Confidence 333333333
No 365
>PRK14149 heat shock protein GrpE; Provisional
Probab=28.17 E-value=50 Score=31.65 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 173 DSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 173 D~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
++.|..+.+++++.+..+-++..|+.+|++
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rK 71 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKK 71 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455444445555555555644
No 366
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=28.13 E-value=1.5e+02 Score=25.55 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhh
Q 044000 182 KIKEAERVLDILVD 195 (420)
Q Consensus 182 kLKeAE~~Ld~~Vd 195 (420)
+|+..+..|+..++
T Consensus 95 ~L~~~~~~l~~~~~ 108 (126)
T cd04783 95 DLQRMRASLQELVS 108 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555553
No 367
>PRK11281 hypothetical protein; Provisional
Probab=28.08 E-value=1.8e+02 Score=34.60 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=48.7
Q ss_pred CchhHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 127 SPSTIKEIIACFTSLQ---TQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 127 ~~~s~keil~lf~s~Q---tqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
....++.-|+.+.... ++=...++.|+.+++.-+++++.+++.++.++.+.+..++++++.+.|+++
T Consensus 37 ~~~~iq~~l~~~~~~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~L 106 (1113)
T PRK11281 37 TEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL 106 (1113)
T ss_pred CHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444555555554321 112234677888888899999999999999999999999999999988864
No 368
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.08 E-value=3.4e+02 Score=22.30 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 155 ILDLQDAKQKIAREIKAKDSAILAFANKIKE 185 (420)
Q Consensus 155 ~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKe 185 (420)
...+.++.++|+.|-..-...|..+-.+|.+
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444566667777777777777777666653
No 369
>PRK12805 flagellin; Provisional
Probab=28.06 E-value=3.2e+02 Score=26.81 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=38.9
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHH
Q 044000 125 DSSPSTIKEIIACFTSLQTQLFEAVAELQEILDL----------QDAKQKIAREIKAKDSAILAFANK 182 (420)
Q Consensus 125 ~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l----------Q~eIq~Lk~EIe~kD~~I~~lakk 182 (420)
...-.++....+.|..-+..|.+....|+...++ ...+..|..||+.+-+.|..+++.
T Consensus 60 ~q~~~Ni~~~~s~l~~~e~~L~~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~Ei~~l~~~i~~~an~ 127 (287)
T PRK12805 60 DAASKNSSMGIDLLQTADSALSSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADT 127 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445567777777777777777777777666555 445666777777666666666653
No 370
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=28.05 E-value=4.3e+02 Score=24.15 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 173 DSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 173 D~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
|..+.+++.+|.+.|..|....+.|
T Consensus 117 ~~~~~~l~~~l~~~E~~I~~aR~~Y 141 (186)
T PF04011_consen 117 DENFQQLMAQLEETENRIAAARRAY 141 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777776655444
No 371
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=27.95 E-value=2.9e+02 Score=22.66 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 044000 179 FANKIKEAERVLDILVDD 196 (420)
Q Consensus 179 lakkLKeAE~~Ld~~VdD 196 (420)
..+...+|+..|..++.+
T Consensus 79 ~v~~y~~ae~~~~~ll~~ 96 (108)
T PF06133_consen 79 VVKEYLQAEQALQDLLQD 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566777777777654
No 372
>PLN02939 transferase, transferring glycosyl groups
Probab=27.71 E-value=1.3e+02 Score=35.47 Aligned_cols=85 Identities=19% Similarity=0.283 Sum_probs=55.0
Q ss_pred hhhhhhcccCCcchhhhhcccCcccccccCCCCCCCCCCC--CCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 044000 86 LASKLFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPID--SSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQ 163 (420)
Q Consensus 86 las~lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~--~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq 163 (420)
.-.++|-+--.|+.-=++.|+-=-.|+.++.-..--.|+. .--..+.++..||+..-.|--+|+..|+.++++++++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (977)
T PLN02939 255 TEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVD 334 (977)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3456777777888888888888788888876433333432 11234455555666666666667777777777777777
Q ss_pred HHHHHHH
Q 044000 164 KIAREIK 170 (420)
Q Consensus 164 ~Lk~EIe 170 (420)
+|+.-++
T Consensus 335 ~~~~~~~ 341 (977)
T PLN02939 335 KLEASLK 341 (977)
T ss_pred HHHHHHH
Confidence 7665444
No 373
>PRK14159 heat shock protein GrpE; Provisional
Probab=27.69 E-value=56 Score=30.84 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCC
Q 044000 347 PPPGWKPGDAVP 358 (420)
Q Consensus 347 pPpgWKpGDPi~ 358 (420)
.=.|||-||-|-
T Consensus 156 ~qkGY~l~dRVL 167 (176)
T PRK14159 156 LQKGYKIADRVI 167 (176)
T ss_pred eeCCcEeCCEee
Confidence 335666666553
No 374
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=27.67 E-value=3.4e+02 Score=28.99 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=17.5
Q ss_pred hhccCCCchHHHHHHHHHHHhhh
Q 044000 66 LLSLLPPLPRAQALLLQMASLAS 88 (420)
Q Consensus 66 ll~llppl~raq~ll~~ma~las 88 (420)
.+.=||.----+.+...++.|..
T Consensus 229 ~ItElP~~~~~~~~~e~i~~l~~ 251 (445)
T cd00187 229 EITELPYQVNKAKLKEKIAELVK 251 (445)
T ss_pred EEEeCCCcccHHHHHHHHHHHHh
Confidence 34557888888888888888775
No 375
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=27.47 E-value=1.8e+02 Score=27.92 Aligned_cols=29 Identities=34% Similarity=0.563 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044000 144 QLFEAVAELQEILDLQDAKQKIAREIKAK 172 (420)
Q Consensus 144 qL~eAV~ELQE~l~lQ~eIq~Lk~EIe~k 172 (420)
||++.+.+.|+.-.+.++-.++...|+.|
T Consensus 143 qL~~~i~evq~lK~lkrkNakv~~~i~kk 171 (175)
T PF13097_consen 143 QLIEMIKEVQELKNLKRKNAKVISDINKK 171 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 376
>smart00338 BRLZ basic region leucin zipper.
Probab=27.45 E-value=2.9e+02 Score=21.23 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=21.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 137 CFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
.+.+..+.---.....+....++.+++.|+.+....-..+..+..++.
T Consensus 10 ~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 10 RERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444455555555555544444444444433
No 377
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=27.42 E-value=5.7e+02 Score=26.44 Aligned_cols=35 Identities=14% Similarity=0.339 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+.++..+...|++.-..+..+++.|++.++.|-.+
T Consensus 213 he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l 247 (294)
T COG1340 213 HEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666666666666666666655543
No 378
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=27.39 E-value=5.2e+02 Score=25.26 Aligned_cols=36 Identities=8% Similarity=0.243 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHh
Q 044000 159 QDAKQKIAREIKAKD-----SAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD-----~~I~~lakkLKeAE~~Ld~~V 194 (420)
+++++.+.+.+.... ..+.+...+|.+.++.|...+
T Consensus 171 ~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~ 211 (319)
T PF02601_consen 171 RQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAI 211 (319)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544 456666666777666666654
No 379
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.39 E-value=5e+02 Score=24.03 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=33.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 133 EIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
.-|+-|+..-+.|-+.+..+.+.++- ++.++.|+.|+....-....+..+++..+..=..+|+.
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333332 55556666666666666666666666666555555543
No 380
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=27.38 E-value=2.9e+02 Score=25.58 Aligned_cols=39 Identities=8% Similarity=0.111 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
+..++.+...++.....|..+..+|.+.+.-.+.++...
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555555555433
No 381
>PF13514 AAA_27: AAA domain
Probab=27.38 E-value=3.1e+02 Score=31.86 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.+-..+.-|+.++++|-++-....+..+++++++.++++++..+..+..+..++..-++++..
T Consensus 151 ~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~ 213 (1111)
T PF13514_consen 151 EINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRA 213 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777788888877777777777777777777777777777777777776666655443
No 382
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=27.32 E-value=1.6e+02 Score=30.31 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=7.6
Q ss_pred HHhhHHHHHHHHHHHHHHHH
Q 044000 170 KAKDSAILAFANKIKEAERV 189 (420)
Q Consensus 170 e~kD~~I~~lakkLKeAE~~ 189 (420)
+..+..+..+.+++.+.++.
T Consensus 327 ~~l~~~~~~l~~~~~~~~~~ 346 (498)
T TIGR03007 327 ASLEARVAELTARIERLESL 346 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 383
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=27.24 E-value=4.4e+02 Score=25.07 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKE 185 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKe 185 (420)
..++++++-....+++|.++++..++.+ +..+..|++-|...-.++..+.+-||+
T Consensus 10 vq~~~~l~~i~q~~~~ll~~~e~~~~lL--~l~v~gik~~V~~L~aRV~alE~~l~d 64 (204)
T PF00517_consen 10 VQSAQLLNGIVQQQSNLLRAQEAQQHLL--QLTVWGIKQGVKQLQARVLALERYLKD 64 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhhhhhhhhhhhhHHHHHHHhhh
Confidence 3456666666666777777776666553 334555655555555555555555554
No 384
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=27.13 E-value=1.4e+02 Score=24.31 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 044000 148 AVAELQEILDLQDAKQKIAREIKAKDSAI 176 (420)
Q Consensus 148 AV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I 176 (420)
-.++.++.+++.++++.|+++|+..-+.+
T Consensus 60 ~l~~i~~~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 60 NLAGVKRILELEEELAELRAELDELRARL 88 (91)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666667777777777776655443
No 385
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=27.08 E-value=1.3e+02 Score=35.01 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=14.1
Q ss_pred ccCCCchHHHHHHHHHHHhh
Q 044000 68 SLLPPLPRAQALLLQMASLA 87 (420)
Q Consensus 68 ~llppl~raq~ll~~ma~la 87 (420)
.=+|..---..|+..|+.|.
T Consensus 266 tEiPy~~~~~~~~~~i~~l~ 285 (957)
T PRK13979 266 TEFPYRRNKAKLLQTISEMT 285 (957)
T ss_pred EccCCcccHHHHHHHHHHHH
Confidence 34677777777888887775
No 386
>PRK00846 hypothetical protein; Provisional
Probab=26.96 E-value=3.8e+02 Score=22.54 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 044000 144 QLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEA 186 (420)
Q Consensus 144 qL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeA 186 (420)
.+.+.+.+|...+-- ++-|+.|.+.|-.....|..+..+|+--
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444433 3445555555555555554444444433
No 387
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.94 E-value=2.2e+02 Score=31.55 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDL 158 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~l 158 (420)
...+++..+|..-..+|.++..+++..++-
T Consensus 262 ~~l~~~~~~l~ea~~~l~ea~~el~~~~~~ 291 (557)
T COG0497 262 GKLSELAELLEEALYELEEASEELRAYLDE 291 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 377888888888888888888888766543
No 388
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.88 E-value=3.4e+02 Score=21.90 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 128 PSTIKEIIACFTSLQTQLFEAVAELQEI 155 (420)
Q Consensus 128 ~~s~keil~lf~s~QtqL~eAV~ELQE~ 155 (420)
...+++-+.-+...|..|.+.+..+.+-
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~ 43 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEK 43 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444433
No 389
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=26.87 E-value=2.7e+02 Score=28.92 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
.++.++..|.+.-..|.++..+=.+.|..+..++.|.
T Consensus 58 ~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dI 94 (383)
T PF04100_consen 58 DLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDI 94 (383)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555544443
No 390
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=26.84 E-value=3.2e+02 Score=28.28 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 044000 176 ILAFANKIKEAERVLDILV 194 (420)
Q Consensus 176 I~~lakkLKeAE~~Ld~~V 194 (420)
.++|.+++..++..++..+
T Consensus 375 l~~L~Re~~~~r~~ye~lL 393 (458)
T COG3206 375 LRELEREAEAARSLYETLL 393 (458)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555
No 391
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.73 E-value=2.3e+02 Score=25.62 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
.+++++++.|+.+|....+....+..+|++-+..|...+.
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3446667777777777777777777778777777776653
No 392
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=26.57 E-value=2.3e+02 Score=23.53 Aligned_cols=35 Identities=11% Similarity=0.321 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
++++..|++.++.....+..+..+++..+..|+.+
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777777777777777766664
No 393
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.50 E-value=3.7e+02 Score=22.24 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHHHh
Q 044000 159 QDAKQKIAREIKAKDS----------AILAFANKIKEAERVLDILV 194 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~----------~I~~lakkLKeAE~~Ld~~V 194 (420)
+.++..+.++|..... .+..+-+++++.|..+..+-
T Consensus 49 r~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 49 RAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554443 34444555555555555543
No 394
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.43 E-value=2.1e+02 Score=23.58 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
..+|+..|++-+.-|-++++.+++= -..+..+.++|.+||+-+..++++
T Consensus 15 LE~IV~~LE~~~l~Leesl~~ye~G-----------------~~L~k~c~~~L~~ae~kv~~l~~~ 63 (75)
T PRK14064 15 LETIVEALENGSASLEDSLDMYQKG-----------------IELTKLCQDKLQSAEKRMAKVVTD 63 (75)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444455555555333 345677888999999999888754
No 395
>PRK12584 flagellin A; Reviewed
Probab=26.42 E-value=2.9e+02 Score=29.92 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=43.3
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHH
Q 044000 125 DSSPSTIKEIIACFTSLQTQLFEAVAELQEILDL----------QDAKQKIAREIKAKDSAILAFANK 182 (420)
Q Consensus 125 ~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l----------Q~eIq~Lk~EIe~kD~~I~~lakk 182 (420)
.....++.+.++++..-+..|.+....||...++ ...++.|++||+.+-+.|..++++
T Consensus 62 ~q~~~N~~~g~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dR~ai~~Ei~~L~~ei~~ian~ 129 (510)
T PRK12584 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNT 129 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667777888888888888888888777665 456777888888887777777774
No 396
>PRK14156 heat shock protein GrpE; Provisional
Probab=26.40 E-value=2.4e+02 Score=26.72 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 147 EAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 147 eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
+.|.+.-+...+..+++.++++++.....++.++..+....+.+.
T Consensus 21 ~~~~~~~~~~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 65 (177)
T PRK14156 21 ETVEEVVEETPEKSELELANERADEFENKYLRAHAEMQNIQRRAN 65 (177)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666666666544444444333333333333
No 397
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=26.34 E-value=3.1e+02 Score=27.38 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044000 154 EILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDY 200 (420)
Q Consensus 154 E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~y 200 (420)
....+.+..++|.+++.+.-..+..|...+.....-|+.++..|++.
T Consensus 227 ~~~~~~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~~ 273 (304)
T PF02646_consen 227 RQEAQNKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYNKA 273 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666666666666666666665543
No 398
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.33 E-value=3.6e+02 Score=31.92 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
-+.|..+.++...+-..|+.++-+-+..+
T Consensus 295 re~i~~vd~~~~~~s~~Ile~~~~r~n~~ 323 (951)
T KOG2115|consen 295 RENIKEVDAENVRKSIKILELALTRKNVE 323 (951)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444444445555544333333
No 399
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=26.28 E-value=5e+02 Score=23.84 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044000 173 DSAILAFANKIKEAERVLDILVDDYSDYR 201 (420)
Q Consensus 173 D~~I~~lakkLKeAE~~Ld~~VdD~~~yq 201 (420)
+....+....|...|+.+++++++.++|+
T Consensus 67 r~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 67 RQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 33444455566667777777776655553
No 400
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=26.22 E-value=6.2e+02 Score=24.66 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---------------HHhhHHHHHHHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIAREI---------------KAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EI---------------e~kD~~I~~lakkLKeAE~~Ld 191 (420)
..|+++.-|.....-|-..+.++.+.++. +++.++|+.+. .+....+..++.+||-.+--+.
T Consensus 101 k~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~ 178 (207)
T PF05010_consen 101 KQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQ 178 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888777666655 44444444433 3334445556666666554333
No 401
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=26.16 E-value=1.3e+02 Score=32.64 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 044000 343 FPLVPPPGWKPGDAVPLPPL 362 (420)
Q Consensus 343 ~p~~pPpgWKpGDPi~lpp~ 362 (420)
-.+..+-|-|-++.+.|||.
T Consensus 193 ~qv~~~~g~k~~~~l~lPP~ 212 (487)
T KOG4672|consen 193 PQLLAPAGIKRKVELQLPPG 212 (487)
T ss_pred ccccccccccccccCCCCCC
Confidence 33446677788888887765
No 402
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=26.11 E-value=1.1e+02 Score=23.80 Aligned_cols=28 Identities=29% Similarity=0.365 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhhH
Q 044000 147 EAVAELQEILD-LQDAKQKIAREIKAKDS 174 (420)
Q Consensus 147 eAV~ELQE~l~-lQ~eIq~Lk~EIe~kD~ 174 (420)
||-..||||-+ ++++|+.|.++|.+..+
T Consensus 5 EAkelLqe~~d~IEqkiedid~qIaeLe~ 33 (46)
T PF08946_consen 5 EAKELLQEHYDNIEQKIEDIDEQIAELEA 33 (46)
T ss_dssp ----------THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHH
Confidence 34444555433 25555555555444433
No 403
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=26.07 E-value=1.8e+02 Score=31.13 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHh
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDL-----------QDAKQKIAREIKAK 172 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~l-----------Q~eIq~Lk~EIe~k 172 (420)
.+..-++.++.++|.||.++-.+|...+.- +.+|.+|+++|.+.
T Consensus 279 ~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~e 333 (434)
T PRK15178 279 ETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQ 333 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 455667889999999999999888876542 55556666665543
No 404
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=26.06 E-value=1.5e+02 Score=24.80 Aligned_cols=15 Identities=13% Similarity=0.488 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhh
Q 044000 159 QDAKQKIAREIKAKD 173 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD 173 (420)
+.+|.+|++|++.||
T Consensus 63 EeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 63 EEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHhhC
Confidence 444444444444443
No 405
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=25.94 E-value=3.7e+02 Score=23.95 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 044000 180 ANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 180 akkLKeAE~~Ld~~VdD~~ 198 (420)
.+.|+.--..|...|..|.
T Consensus 41 ~~~l~~~i~~l~~~l~~y~ 59 (149)
T PF07352_consen 41 IAPLQNRIEYLEGLLQAYA 59 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555554
No 406
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=25.92 E-value=5.6e+02 Score=31.73 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=70.0
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAI----LAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I----~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
+.+...+++..-...+++|.++.+|+.+++++=++...-..|+..+-+++ .+...|..+.-+.|++++.+..+|+.
T Consensus 1406 a~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1406 AVTRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLT 1485 (1758)
T ss_pred hhcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566788889999999999999999999888444433334444443333 34445667788888888887777865
Q ss_pred ccccccCCCCCCCCCCCCcccc---cccCCChHHHHHHHhhhhcc
Q 044000 203 PKRVKSEGGDGNDDDSGSCSTT---VESRLNLSDILSYAHRISYT 244 (420)
Q Consensus 203 ~KRlKs~~~~~~~e~~~~~~~A---~~~~V~~eDLIsYAHRIS~T 244 (420)
.+. + +++++...... ..-+++++.|...+-.|--.
T Consensus 1486 ~~~---a----dp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~ 1523 (1758)
T KOG0994|consen 1486 QPD---A----DPDSIEEVAEEVLALELPLTPEQIQQLTGEIQER 1523 (1758)
T ss_pred CCC---C----CHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 111 1 11111111111 23457788888888877543
No 407
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=25.72 E-value=1.7e+02 Score=25.79 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHH
Q 044000 173 DSAILAFANKIKEA 186 (420)
Q Consensus 173 D~~I~~lakkLKeA 186 (420)
|..+.+|..+||+|
T Consensus 100 e~~~~~~~~kLk~A 113 (134)
T PF12010_consen 100 EEALPEFNEKLKAA 113 (134)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444444
No 408
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=25.62 E-value=2.3e+02 Score=30.65 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=32.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 138 FTSLQTQLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 138 f~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
|++.=....++..+|+-++.. -++|...+..|+.....|++.--=||-|+.-|++
T Consensus 276 f~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~ 331 (421)
T KOG2685|consen 276 FKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLEN 331 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHH
Confidence 333333345555555555444 5566666666666666666666667777766664
No 409
>PRK13676 hypothetical protein; Provisional
Probab=25.62 E-value=2.3e+02 Score=24.04 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
.++++.+.++|.. +. ..+.+.+||+.|..++.+-
T Consensus 67 ~~~l~~l~~~i~~-n~----~i~~y~~Ae~~l~~ll~~v 100 (114)
T PRK13676 67 QQKAQELGQKIQQ-NE----LLSKLMEAEQRLSVYINDI 100 (114)
T ss_pred HHHHHHHHHHHhc-CH----HHHHHHHHHHHHHHHHHHH
Confidence 4555556555533 22 3456677888888877553
No 410
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=25.61 E-value=2.1e+02 Score=32.61 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSD 199 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~ 199 (420)
++|...|++||+.....+..-.+..+-....|..+-+.|.+
T Consensus 430 ~~E~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~~~g~ 470 (735)
T TIGR01062 430 IDEQSELEKERAILEKILKSERELNQLVKKEIQADATKYGL 470 (735)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 44444455555554444444444444445555555555543
No 411
>PRK00846 hypothetical protein; Provisional
Probab=25.57 E-value=4.1e+02 Score=22.38 Aligned_cols=29 Identities=7% Similarity=0.007 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
.+.+.+.+++|...-+.++.+..+||+++
T Consensus 33 N~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 33 SEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444455555555555554
No 412
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=25.52 E-value=5.2e+02 Score=25.92 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=7.1
Q ss_pred CCCCCCCCCC
Q 044000 329 SGWKPGMPVE 338 (420)
Q Consensus 329 ~gWkpG~pv~ 338 (420)
..|+|||-|.
T Consensus 284 ~~L~pGm~~~ 293 (385)
T PRK09578 284 RELLPGAYVR 293 (385)
T ss_pred CcCCCCCEEE
Confidence 3578888766
No 413
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=25.45 E-value=4.5e+02 Score=28.66 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.....++.+||++.++++.++..++++.+..++.
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~ 125 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIER 125 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555443
No 414
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.39 E-value=3.7e+02 Score=21.84 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=9.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q 044000 166 AREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 166 k~EIe~kD~~I~~lakkLKeAE 187 (420)
+++|....+.++.+..+|++.+
T Consensus 35 q~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 35 EMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3333444444444555555544
No 415
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=25.35 E-value=5.5e+02 Score=26.08 Aligned_cols=9 Identities=44% Similarity=0.542 Sum_probs=5.7
Q ss_pred CCCCCCCCC
Q 044000 330 GWKPGMPVE 338 (420)
Q Consensus 330 gWkpG~pv~ 338 (420)
.|+|||-|.
T Consensus 286 ~L~pGm~~~ 294 (397)
T PRK15030 286 TLLPGMFVR 294 (397)
T ss_pred cccCCCEEE
Confidence 467777655
No 416
>PRK12807 flagellin; Provisional
Probab=25.34 E-value=3.9e+02 Score=26.17 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=31.3
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHH
Q 044000 126 SSPSTIKEIIACFTSLQTQLFEAVAELQEILDL----------QDAKQKIAREIKAKDSAILAFA 180 (420)
Q Consensus 126 ~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l----------Q~eIq~Lk~EIe~kD~~I~~la 180 (420)
....++.+..+.|..-+..|.+...-|+...++ ...+..|+.||+..-+.|..++
T Consensus 61 q~~~N~~~~~s~l~~ad~~L~~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~Ei~~l~~~i~~~a 125 (287)
T PRK12807 61 KASQNTQDGMSLIRTAESAMNSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIA 125 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666555444 3455555566555555555554
No 417
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=25.32 E-value=28 Score=26.03 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=5.1
Q ss_pred CCcHHHHhhh
Q 044000 265 APQEEQMRAS 274 (420)
Q Consensus 265 aPQEeeMRaG 274 (420)
+|+++||+.-
T Consensus 6 ~Pt~eEF~Dp 15 (42)
T smart00545 6 YPTMEEFKDP 15 (42)
T ss_pred cCCHHHHHCH
Confidence 4555555543
No 418
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.22 E-value=5e+02 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=14.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 170 KAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 170 e~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+.....+..+.++|++-+.-.++++
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666655
No 419
>PF15456 Uds1: Up-regulated During Septation
Probab=25.15 E-value=2.2e+02 Score=25.55 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
..+++.|++|+...|..|..+.++|. .|.-+
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~ 51 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKI 51 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 67788888888888888887776665 44433
No 420
>PRK14127 cell division protein GpsB; Provisional
Probab=25.12 E-value=1.7e+02 Score=25.98 Aligned_cols=26 Identities=8% Similarity=0.187 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
.+++.+|+.|+......+.++..++.
T Consensus 43 ~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 43 QKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555555555555555544444
No 421
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=25.12 E-value=5.8e+02 Score=23.98 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=41.8
Q ss_pred cccCccccccc-CC-CCCCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--
Q 044000 104 FRGSLPTFLSS-QA-QSQPPPPIDSSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAF-- 179 (420)
Q Consensus 104 ~rgslptfl~s-~~-~~~~~~p~~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~l-- 179 (420)
+=..+|.|-.. .. ....+-.+-.....+.++...|...=..+++ .-.+|..+..|..||+.=.+.++.|
T Consensus 99 ~GV~vP~~~~~~~~~~~~~~y~~~~t~~~~d~a~~~~~~~l~~li~-------lA~~e~~~~~L~~ei~kT~RRVNALE~ 171 (204)
T PRK00373 99 MGVVVPVIELSVKRTLPERGYGFLGTSAELDEAAEKFEELLEKILE-------LAEVEKTIQLLADEIEKTKRRVNALEY 171 (204)
T ss_pred EEEEeceEEeecccCCccCCcCcccCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44568888762 21 1111223334456677777666544333333 2333555556666666555555554
Q ss_pred ------HHHHHHHHHHHHH
Q 044000 180 ------ANKIKEAERVLDI 192 (420)
Q Consensus 180 ------akkLKeAE~~Ld~ 192 (420)
.+..|-.+..|+.
T Consensus 172 vvIP~le~~ik~I~~~LeE 190 (204)
T PRK00373 172 VIIPRLEETIKYIKMKLDE 190 (204)
T ss_pred ccccchHHHHHHHHHHHhh
Confidence 4455555555554
No 422
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=25.10 E-value=3.6e+02 Score=25.74 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044000 159 QDAKQKIAREIKA----KDSAILAFANKIKEAERVLDILVDDYSDY 200 (420)
Q Consensus 159 Q~eIq~Lk~EIe~----kD~~I~~lakkLKeAE~~Ld~~VdD~~~y 200 (420)
.++|+.|++.++- ....+....++.+++...+..+.+++..+
T Consensus 138 ~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L 183 (194)
T PF15619_consen 138 EKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRL 183 (194)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555442 33444555566666666666666555444
No 423
>TIGR01845 outer_NodT efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined.
Probab=25.09 E-value=5.9e+02 Score=25.25 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=16.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 164 KIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 164 ~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+.+.++......+.++.+++..++..|..++
T Consensus 212 ~a~~~l~~~~~~l~~~~~~~~~a~~~L~~Ll 242 (454)
T TIGR01845 212 QAEAAVASAEAELPSLDVQIAQARNALAALL 242 (454)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 3444444455555555555555555555555
No 424
>PRK08411 flagellin; Reviewed
Probab=25.02 E-value=3.1e+02 Score=30.63 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=43.3
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHH
Q 044000 125 DSSPSTIKEIIACFTSLQTQLFEAVAELQEILDL----------QDAKQKIAREIKAKDSAILAFANK 182 (420)
Q Consensus 125 ~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l----------Q~eIq~Lk~EIe~kD~~I~~lakk 182 (420)
.....++.+.++++..-+..|.+....||...++ ...+..|++||+.+-+.|..+++.
T Consensus 62 ~Qa~rNa~dgiS~LqtAEgAL~ei~diLqRiRELaVQAaNGT~S~~DR~AIq~EI~qL~eqI~~IANt 129 (572)
T PRK08411 62 GQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANT 129 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455677778888888888888888888777655 456777888888877777777765
No 425
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=24.99 E-value=3.4e+02 Score=24.87 Aligned_cols=59 Identities=27% Similarity=0.346 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEIL---DLQDAKQKIAREIKAKDSAILAFANKIKEA---ERVLDIL 193 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l---~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeA---E~~Ld~~ 193 (420)
+++|||-.+++.+++....-.+.+.+.. ..+..++.+.+-| |.++..++..| +++|+.+
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKI------IkDisdkIdkCeC~Kelle~L 67 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKI------IKDISDKIDKCECNKELLEAL 67 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHH------HHHHHHHHHT-TTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH------HHHHHHHHHhchhhHHHHHHH
Confidence 4567776666554443222111111111 1134444444443 44566666666 4555553
No 426
>PRK11519 tyrosine kinase; Provisional
Probab=24.95 E-value=2.5e+02 Score=31.10 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+++.+..++-++-.++.+..+.++|.++|+.|..
T Consensus 259 ~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 259 ERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555555555544
No 427
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.95 E-value=2.9e+02 Score=29.75 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 163 QKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 163 q~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
..|.+|++..-..|..+-.+|++.+..|+.++
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 71 EELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44555555555555555555555665555544
No 428
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.94 E-value=5.1e+02 Score=29.45 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHhhh
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKD------------SAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD------------~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
.++=.++..++++-.+.-.+.++...+.+++++++++++.+- +.-.+...-|++|++..+.++.+
T Consensus 516 ~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~ 592 (782)
T PRK00409 516 EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKE 592 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.91 E-value=2.9e+02 Score=22.13 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+.++.+|+-.|....+.+.++.+.+.+.++-+..+++=
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555443
No 430
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.90 E-value=5.7e+02 Score=23.83 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhhhhhhcccCCcchhhhhc
Q 044000 74 PRAQALLLQMASLASKLFEVSPNRSLWISAF 104 (420)
Q Consensus 74 ~raq~ll~~ma~las~lfe~s~nr~~w~~~~ 104 (420)
..++.|+..-..|++.+.|+.+.=..|-..=
T Consensus 35 kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E 65 (200)
T cd07624 35 RISQRIHKERIEYFDELKEYSPIFQLWSASE 65 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3466777777888888888888777776543
No 431
>PRK13588 flagellin B; Provisional
Probab=24.88 E-value=3.1e+02 Score=29.97 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=45.3
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHH
Q 044000 125 DSSPSTIKEIIACFTSLQTQLFEAVAELQEILDL----------QDAKQKIAREIKAKDSAILAFANK 182 (420)
Q Consensus 125 ~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l----------Q~eIq~Lk~EIe~kD~~I~~lakk 182 (420)
.....++.+.++++..-+.-|.+....||...++ ...++.|++||+.+-+.|..+++.
T Consensus 62 ~Qa~~N~~dgis~lqtae~aL~~i~~iLqrireLavqAaNgt~s~~dR~aiq~Ei~qL~~eI~~iant 129 (514)
T PRK13588 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANT 129 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455667778888888888888888888887666 567788888888888888887775
No 432
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.72 E-value=4.2e+02 Score=31.83 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
+++|....+||+++.....++.++++.+++....+...|+.++.
T Consensus 740 ~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~ 783 (1074)
T KOG0250|consen 740 AREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGRE 783 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667777777777888888888888888888776644
No 433
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=24.70 E-value=2.5e+02 Score=26.01 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 153 QEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 153 QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
++..+.+.++..+++.+......+..|-.+|++.+.-|..+-
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444777777777777777777777777777777777754
No 434
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=24.69 E-value=3.1e+02 Score=24.50 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHH
Q 044000 148 AVAELQEILDLQDAKQKIARE--IKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 148 AV~ELQE~l~lQ~eIq~Lk~E--Ie~kD~~I~~lakkLKeAE~~L 190 (420)
.+..|.|.-..|+.|..++++ .......+.++..+|..++..+
T Consensus 69 vLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 69 VLALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 435
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=24.67 E-value=2.6e+02 Score=21.45 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=15.3
Q ss_pred HhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 044000 139 TSLQTQLFEAVAELQEILDL----QDAKQKIAREIKA 171 (420)
Q Consensus 139 ~s~QtqL~eAV~ELQE~l~l----Q~eIq~Lk~EIe~ 171 (420)
+.++.++-+..+.|...+++ .+.++.|+.||++
T Consensus 6 ~~kd~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~E 42 (45)
T PF04394_consen 6 EEKDKQIEELQKLLDQQQQLALQDNKKLEELKAELEE 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333 4555556666554
No 436
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=24.63 E-value=1.7e+02 Score=25.95 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHh
Q 044000 183 IKEAERVLDILV 194 (420)
Q Consensus 183 LKeAE~~Ld~~V 194 (420)
|...++.|..++
T Consensus 100 L~~~~~~L~~~~ 111 (140)
T PRK09514 100 LQHMRRSLQRLN 111 (140)
T ss_pred HHHHHHHHHHHH
Confidence 444445555544
No 437
>PRK10722 hypothetical protein; Provisional
Probab=24.61 E-value=4.4e+02 Score=26.70 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=32.5
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
-|+++.=++.++...|.+.+....|=+..+.+|+.- ..+++..-+....++.+|..-.+-|+++
T Consensus 139 ~p~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQq~s---D~qlD~lrqq~~~Lq~~L~~t~rKLEnL 202 (247)
T PRK10722 139 IPAQVRPLYQLWRDGQALQLALAEERQRYQKLQQSS---DSELDALRQQQQRLQYQLELTTRKLENL 202 (247)
T ss_pred cchhhhHHHHHHHHhhHHHHhHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666555555555444552111 3444444444445555555555555543
No 438
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=24.60 E-value=4.7e+02 Score=22.79 Aligned_cols=73 Identities=15% Similarity=0.279 Sum_probs=50.1
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 125 DSSPSTIKEIIACFTSLQTQLFEAV----AELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 125 ~~~~~s~keil~lf~s~QtqL~eAV----~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
+........++..|...+..+.+.- ..-.+...-++...+|..+|+.-...|.++-.+|.+|+.++.+-. +|+
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~-eyd 118 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE-EYD 118 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4455566677777776666544332 112233344777788888888888899999999999999988854 444
No 439
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=24.52 E-value=5.5e+02 Score=25.79 Aligned_cols=11 Identities=36% Similarity=0.462 Sum_probs=7.6
Q ss_pred CCCCCCCCCCC
Q 044000 329 SGWKPGMPVEL 339 (420)
Q Consensus 329 ~gWkpG~pv~l 339 (420)
..|+|||.|..
T Consensus 281 ~~l~pGm~v~v 291 (385)
T PRK09859 281 GDLLPGMYVTA 291 (385)
T ss_pred CeECCCCEEEE
Confidence 35788887763
No 440
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=24.52 E-value=2.5e+02 Score=25.15 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 154 EILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 154 E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
|...++.+|..|+.|.+..+..-.++.+.+|--|..|...
T Consensus 26 ERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqE 65 (134)
T PF08232_consen 26 ERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQE 65 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667799999999999999999999999999988888874
No 441
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.47 E-value=3.1e+02 Score=26.98 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred chhHHHHHH----HHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 128 PSTIKEIIA----CFTSLQTQLFEAVAELQEILDL-------QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 128 ~~s~keil~----lf~s~QtqL~eAV~ELQE~l~l-------Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
...+||++. +|+..+..-.....+-...-++ ..++....+++++=.....++.++++.+-..+..-+..
T Consensus 114 ~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~r 193 (230)
T cd07625 114 AYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKE 193 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcccccccccccCCCCCCCCCCCCcccccccCCChH-HHHHHHhhh
Q 044000 197 YSDYRRPKRVKSEGGDGNDDDSGSCSTTVESRLNLS-DILSYAHRI 241 (420)
Q Consensus 197 ~~~yqa~KRlKs~~~~~~~e~~~~~~~A~~~~V~~e-DLIsYAHRI 241 (420)
|..++. +.++.. |..-..+.|.++ .+|+|=-+|
T Consensus 194 f~~~~~-~dl~~~-----------l~ey~~~~ie~erk~l~~lE~~ 227 (230)
T cd07625 194 WTDWTE-EDLQSA-----------IREYTLRKIEYERKKLSLLERI 227 (230)
T ss_pred HHHHHH-HHHHHH-----------HHHHHHHHHHHHHHHHHHHHhc
No 442
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=24.42 E-value=2.9e+02 Score=26.32 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=36.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044000 136 ACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERV 189 (420)
Q Consensus 136 ~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~ 189 (420)
+||+-+|.+..+...+ ++++|+.|+.+...-+..+..+.+.|......
T Consensus 28 S~~rwk~~~~~e~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 75 (177)
T PF03234_consen 28 SLFRWKHQARHERREE------RKQEIEELKYERKINEKLLKRIQKLLSALDKE 75 (177)
T ss_pred HHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6888888887766554 47788888888888888888888777665544
No 443
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=24.39 E-value=4.2e+02 Score=27.22 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 141 LQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 141 ~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
++.-|..---||.++..+..+.++|+++....-+.|....+.|..-..-|..++
T Consensus 89 H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~ 142 (355)
T PF09766_consen 89 HQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLK 142 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444443
No 444
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=24.32 E-value=3.6e+02 Score=30.02 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 139 TSLQTQLFEAVAELQEIL-DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 139 ~s~QtqL~eAV~ELQE~l-~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
..+-.+|.++..+|++.. +..+++++|+..++.....|..+...|..++..|..
T Consensus 335 aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqE 389 (546)
T PF07888_consen 335 AQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQE 389 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 445
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=24.32 E-value=6.5e+02 Score=29.87 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=10.6
Q ss_pred CChHHHHHHHhhhh
Q 044000 229 LNLSDILSYAHRIS 242 (420)
Q Consensus 229 V~~eDLIsYAHRIS 242 (420)
|+...|..|..+|.
T Consensus 768 vD~~~I~~l~~~i~ 781 (1201)
T PF12128_consen 768 VDPERIQQLKQEIE 781 (1201)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777877777775
No 446
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=24.29 E-value=4.1e+02 Score=23.62 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 044000 162 KQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakkLK 184 (420)
...++.+++.....++.+.+.+.
T Consensus 45 ~~~~~~~~~~~~~~~~~~i~~i~ 67 (120)
T PF09969_consen 45 VNGLEAELEELEARLRELIDEIE 67 (120)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444443
No 447
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=24.26 E-value=40 Score=32.98 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc----cccccccccCCCCCCCCCCCCcccccccCCChHHHHH-----HHhhhhcccCC
Q 044000 177 LAFANKIKEAERVLDILVDDYSD----YRRPKRVKSEGGDGNDDDSGSCSTTVESRLNLSDILS-----YAHRISYTTFA 247 (420)
Q Consensus 177 ~~lakkLKeAE~~Ld~~VdD~~~----yqa~KRlKs~~~~~~~e~~~~~~~A~~~~V~~eDLIs-----YAHRIS~TTsA 247 (420)
..|.-.|+|+|..|+.+|++-.. +...+|.+.. ++.|.+..+ .+++ +.=||..+++.
T Consensus 106 ~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~-----------~G~Al~~A~---~ll~~~~~~~gGki~~F~sg 171 (267)
T cd01478 106 SRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRC-----------TGVALSIAV---GLLEACFPNTGARIMLFAGG 171 (267)
T ss_pred ccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCc-----------hHHHHHHHH---HHHHhhcCCCCcEEEEEECC
Confidence 35777889999999998876421 1111222211 223332222 2332 34588889999
Q ss_pred CCCCCCCCC
Q 044000 248 PPEFGAGQG 256 (420)
Q Consensus 248 Pp~wqpGq~ 256 (420)
|++|++|..
T Consensus 172 ~pT~GpG~l 180 (267)
T cd01478 172 PCTVGPGAV 180 (267)
T ss_pred CCCCCCcee
Confidence 999999953
No 448
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=24.25 E-value=5.7e+02 Score=26.76 Aligned_cols=88 Identities=5% Similarity=0.084 Sum_probs=51.6
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRV 206 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KRl 206 (420)
..++..++-..|.+.+.+..+....+.+. +++.+.+|+....++.. +..-++..++.+++++.+-.
T Consensus 94 ~~~s~~~~n~t~~~i~~~v~~~~~~l~~~--v~~~l~~Le~~~~~~~~----~~~~~~~~~~~~~~v~~~l~-------- 159 (406)
T PF04906_consen 94 LIYSLRNANHTLSGIDNLVSDTTEALNST--VEQHLTRLEEIFAKRTD----LLQALQFLQQQAENVVQQLD-------- 159 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccc----HHHHHHHHHHHHHHHHHHHh--------
Confidence 35566677777777776666665555433 45667777777666654 44455555666666663322
Q ss_pred ccCCCCCCCCCCCCcccccccCCChHHHHHHHhhh
Q 044000 207 KSEGGDGNDDDSGSCSTTVESRLNLSDILSYAHRI 241 (420)
Q Consensus 207 Ks~~~~~~~e~~~~~~~A~~~~V~~eDLIsYAHRI 241 (420)
.+ ..-.+..++++++..+.+++
T Consensus 160 -~l------------~~~~~~~~~l~~~~~~~~~~ 181 (406)
T PF04906_consen 160 -EL------------PFWRNVSLSLEQLAEQVSFY 181 (406)
T ss_pred -cC------------cccccCCCCHHHHHHHHHHH
Confidence 11 11122367788888877765
No 449
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=24.24 E-value=4.5e+02 Score=25.80 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=44.7
Q ss_pred hcccCcccccccCCCCCCCCCC--CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---
Q 044000 103 AFRGSLPTFLSSQAQSQPPPPI--DSSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAIL--- 177 (420)
Q Consensus 103 ~~rgslptfl~s~~~~~~~~p~--~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~--- 177 (420)
-|.+.+|+|-..... .++... ..++..+.+.+..|... ++++-++.+. |..++.|..||+.=...+.
T Consensus 97 I~GV~vP~~~~~~~~-~~~~~~~~~~t~~~ld~a~~~~~el----le~li~lae~---e~~~~~L~~Ei~~T~RRVNalE 168 (211)
T COG1394 97 IMGVVVPTFELVELT-PPPYDLGILSTSAWLDEAIEKFEEL----LEKLIELAEL---ETTLRLLLEEIRKTKRRVNALE 168 (211)
T ss_pred eeeeeeeeeeeeccC-CCcccccccCCcHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Confidence 467889999887443 222222 45566667776666543 3333333222 4444444455544444444
Q ss_pred -----HHHHHHHHHHHHHHH
Q 044000 178 -----AFANKIKEAERVLDI 192 (420)
Q Consensus 178 -----~lakkLKeAE~~Ld~ 192 (420)
.+.+..|-.+..|+.
T Consensus 169 ~~iIP~l~~tikyI~~~LeE 188 (211)
T COG1394 169 YVIIPRLENTIKYIESKLEE 188 (211)
T ss_pred hhhcccHHHHHHHHHHHHHH
Confidence 445566667777766
No 450
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=24.12 E-value=6.3e+02 Score=24.08 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILD 157 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~ 157 (420)
+-..-.|+-.++...+.+|.++-.+.+++++
T Consensus 96 Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~ 126 (204)
T PRK09174 96 AARLKQEADAAVAAYEQELAQARAKAHSIAQ 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666677777777777776654
No 451
>PRK12803 flagellin; Provisional
Probab=23.96 E-value=4e+02 Score=27.41 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=35.2
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHH
Q 044000 126 SSPSTIKEIIACFTSLQTQLFEAVAELQEILDL----------QDAKQKIAREIKAKDSAILAFANK 182 (420)
Q Consensus 126 ~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l----------Q~eIq~Lk~EIe~kD~~I~~lakk 182 (420)
....++.+..++|..-+.-|.+...-||...++ ...++.|+.||+..-+.|..+++.
T Consensus 61 q~~~Ni~~a~s~lqtae~aL~~i~~~LqrirELavqA~Ngt~s~~dR~ai~~Ei~qL~~~i~~ian~ 127 (335)
T PRK12803 61 QASRNTSKAINFIQTTEGNLNEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQ 127 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666667777777777777766665554 345566666666666666555553
No 452
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.93 E-value=3.2e+02 Score=26.00 Aligned_cols=37 Identities=5% Similarity=0.204 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
.+-++|+.|+.+.-..+..+.+++..-+.-+..+-+|
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444
No 453
>PLN02678 seryl-tRNA synthetase
Probab=23.87 E-value=3e+02 Score=29.51 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 044000 177 LAFANKIKEAERVLDILV 194 (420)
Q Consensus 177 ~~lakkLKeAE~~Ld~~V 194 (420)
+++-+++++.|..|+.+-
T Consensus 81 ~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 81 KELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 454
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=23.87 E-value=4.3e+02 Score=21.99 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 158 LQDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
++...+.++++++..+....++...+...+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 118 (120)
T PF11740_consen 86 LEAARAELEQERAAAEAELAEAEAQAEELEAEL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666655555555555555554443
No 455
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.80 E-value=3.6e+02 Score=24.09 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++++.+++.++..+..+.++..-+...++.+.+
T Consensus 81 ~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~ 113 (134)
T cd04779 81 QEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRM 113 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333
No 456
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=23.75 E-value=5.8e+02 Score=25.56 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=12.0
Q ss_pred CCchhHHHHHHHHHhhHHHHH
Q 044000 126 SSPSTIKEIIACFTSLQTQLF 146 (420)
Q Consensus 126 ~~~~s~keil~lf~s~QtqL~ 146 (420)
+-+..+-|.+.-|+-.|..+.
T Consensus 24 ~Rpeilye~l~kL~pwq~lat 44 (231)
T COG5493 24 QRPEILYEVLAKLTPWQQLAT 44 (231)
T ss_pred hChHHHHHHHHhhchHHHHHH
Confidence 344556666666666665544
No 457
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.72 E-value=5.7e+02 Score=28.25 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=32.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 136 ACFTSLQTQLFEAVAELQEILDLQDAKQK------------IAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 136 ~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~------------Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
...+++-+||..+++++++.++-++++.+ |++..+...+.+.....+..+-+.-|..+.
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 35566666677777777777666666544 333344444444444444455555555544
No 458
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=23.65 E-value=3.1e+02 Score=28.08 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=23.1
Q ss_pred HhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 139 TSLQTQLFEAVAELQEILDL--------QDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 139 ~s~QtqL~eAV~ELQE~l~l--------Q~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
+.+|.+|..++.|||+.+-- +.++..|-+...+|+..|..+-..|
T Consensus 50 ~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llqel 102 (277)
T PF15030_consen 50 TRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLLQEL 102 (277)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666544321 4444555555555555555554444
No 459
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.65 E-value=45 Score=36.02 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=13.3
Q ss_pred eeeccCCCCCCCCCCCccCCCCCCC
Q 044000 395 VELDILDQDDDSSDYSSEEGSSEDD 419 (420)
Q Consensus 395 v~ld~~~~~~~s~~yss~~~ss~~~ 419 (420)
+++|+|+.-+-+|-|++|+|++||+
T Consensus 257 r~~~~n~sv~~~ss~~edD~Dddd~ 281 (514)
T KOG3130|consen 257 RNSQLNCSVNGSSSYHEDDDDDDDD 281 (514)
T ss_pred hhhcccccccCCCCccccccccccc
Confidence 4666665444455555555554444
No 460
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=23.61 E-value=7.8e+02 Score=25.82 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 044000 172 KDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 172 kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.+..+..+++.|.+++..|..+.
T Consensus 217 ~~~~~e~~~k~lee~~~lL~e~~ 239 (325)
T KOG2669|consen 217 LNSLIESLAKHLEEEEMLLREVN 239 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888889988888888765
No 461
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=23.61 E-value=4.9e+02 Score=26.33 Aligned_cols=7 Identities=43% Similarity=0.719 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 044000 132 KEIIACF 138 (420)
Q Consensus 132 keil~lf 138 (420)
||+++.|
T Consensus 25 kelie~l 31 (272)
T KOG4552|consen 25 KELIETL 31 (272)
T ss_pred HHHHHHH
Confidence 3333333
No 462
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=23.61 E-value=2.7e+02 Score=23.73 Aligned_cols=11 Identities=0% Similarity=0.208 Sum_probs=4.7
Q ss_pred hhHHHHHHHHH
Q 044000 129 STIKEIIACFT 139 (420)
Q Consensus 129 ~s~keil~lf~ 139 (420)
..+++++.+++
T Consensus 61 ~~I~~~l~~~~ 71 (107)
T cd01111 61 DELARLCRALD 71 (107)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 463
>PF15556 Zwint: ZW10 interactor
Probab=23.58 E-value=6.7e+02 Score=25.29 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=21.5
Q ss_pred cccccccCCCCCCCCCCCCCchhHHHHHH
Q 044000 108 LPTFLSSQAQSQPPPPIDSSPSTIKEIIA 136 (420)
Q Consensus 108 lptfl~s~~~~~~~~p~~~~~~s~keil~ 136 (420)
|=+||..--..+...||.+-.++-.+++.
T Consensus 35 LqnFLaqed~~QgldpLaSedtsRqkai~ 63 (252)
T PF15556_consen 35 LQNFLAQEDTAQGLDPLASEDTSRQKAIE 63 (252)
T ss_pred HHHHHhcCcccccCCcccchhHHHHHHHH
Confidence 45788887777778888887777666654
No 464
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.52 E-value=4.5e+02 Score=27.41 Aligned_cols=20 Identities=25% Similarity=0.094 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 044000 173 DSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 173 D~~I~~lakkLKeAE~~Ld~ 192 (420)
.+.|.++.+++++++..+..
T Consensus 67 ~~~i~~L~~~Ik~r~~~l~D 86 (330)
T PF07851_consen 67 RELIEKLEEDIKERRCQLFD 86 (330)
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 44555566666666655544
No 465
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=23.51 E-value=5.5e+02 Score=23.16 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=36.6
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
..---.||..-|..+|++|.+.+..=... +.+|.. |-...-.++.|++.|.++...++.+
T Consensus 31 ~~~eDDEI~aeLR~lQ~eLr~~~~~N~~r------k~rL~~-~~~e~ma~QE~~~~l~~lD~~V~~a 90 (131)
T PF10198_consen 31 DNREDDEISAELRRLQAELREQSAHNNAR------KKRLLK-IAKEEMARQEYKRILDDLDKQVEQA 90 (131)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999988776554333 222222 2222344566666666666655553
No 466
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=23.44 E-value=2.2e+02 Score=24.44 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
++++++..++.+|+.-+..+.++.+++|.-+
T Consensus 5 ~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 5 ELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777788888888888888877777654
No 467
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.42 E-value=6.9e+02 Score=24.49 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhhh
Q 044000 182 KIKEAERVLDILVDD 196 (420)
Q Consensus 182 kLKeAE~~Ld~~VdD 196 (420)
.+.+++..|+.++++
T Consensus 126 ~v~~~~~~l~~ll~~ 140 (291)
T PF10475_consen 126 TVQQTQSRLQELLEE 140 (291)
T ss_pred HHHHHHHHHHHHHhc
Confidence 333444444444433
No 468
>TIGR02131 phaP_Bmeg polyhydroxyalkanoic acid inclusion protein PhaP. This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Probab=23.42 E-value=3.3e+02 Score=25.91 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDLQDA 161 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~lQ~e 161 (420)
+|--+++|+..+.|.-+.++.+-|.+++|++
T Consensus 109 tKtSlSil~Qt~~QfeettkqfiEqqq~qRe 139 (165)
T TIGR02131 109 SKSSLSILKQAQEQFEETTKQFIEEQKKQRE 139 (165)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556889999999999999999888877654
No 469
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=23.39 E-value=1.7e+02 Score=32.65 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHhhhhhhcccC
Q 044000 74 PRAQALLLQMASLASKLFEVSP 95 (420)
Q Consensus 74 ~raq~ll~~ma~las~lfe~s~ 95 (420)
...+++...+..+..+++++++
T Consensus 120 ~e~~al~~~l~~~~~el~~l~~ 141 (775)
T TIGR00763 120 EEIKALTREIKETFRELISLSK 141 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 3467888888888888888777
No 470
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=4.4e+02 Score=23.92 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
...+..|+.-++..+-+|..+.++-+.-+.-|+.
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~e 102 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEE 102 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666665555555544
No 471
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=23.33 E-value=5.3e+02 Score=22.93 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=30.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEIL-DLQDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l-~lQ~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
++.+..+...=..+.+.+++|+.|. ....+++++++.-...-..+..++.++.
T Consensus 43 ~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 43 EEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666665551 2256666666666666666666666665
No 472
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.30 E-value=2.2e+02 Score=22.26 Aligned_cols=28 Identities=4% Similarity=0.191 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044000 162 KQKIAREIKAKDSAILAFANKIKEAERV 189 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakkLKeAE~~ 189 (420)
|.+|++.|+.+...++.|++.+.....+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777766555443
No 473
>COG1538 TolC Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=23.28 E-value=6.4e+02 Score=25.73 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 163 QKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 163 q~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.+.+..+..-...+.+...+++.++..|..++
T Consensus 202 ~qa~a~~~~a~~~l~~~~~~~~~a~~~L~~L~ 233 (457)
T COG1538 202 LQAEAQLASARAQLAAAQAQLAQARNALARLL 233 (457)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555556666666666666655
No 474
>PF13166 AAA_13: AAA domain
Probab=23.27 E-value=5e+02 Score=27.97 Aligned_cols=43 Identities=7% Similarity=0.073 Sum_probs=24.1
Q ss_pred HHHHHhhhhcccCCCCCC--CCC---CCCCCCCCCCCCcHHHHhhhhhhhcccc
Q 044000 234 ILSYAHRISYTTFAPPEF--GAG---QGPLRGALPPAPQEEQMRASQLYTFADL 282 (420)
Q Consensus 234 LIsYAHRIS~TTsAPp~w--qpG---q~PlR~~~PPaPQEeeMRaG~L~~~Adl 282 (420)
+|++|.-++-.....-+. ... +||... -|+.+|-++..++.++
T Consensus 508 ~iAf~yFla~l~~~~~~~~~~~iiViDDPISS------LD~~~~~~v~~~l~~~ 555 (712)
T PF13166_consen 508 AIAFAYFLAELKEDDEDINKKKIIVIDDPISS------LDHNRRFGVASRLKEE 555 (712)
T ss_pred HHHHHHHHHHHhhcccccCcCceEEECCCCCC------CCHHHHHHHHHHHHHH
Confidence 677777665433222222 111 477764 5778887777665554
No 475
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.25 E-value=2.6e+02 Score=23.94 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=3.9
Q ss_pred HHHHHHHHHh
Q 044000 185 EAERVLDILV 194 (420)
Q Consensus 185 eAE~~Ld~~V 194 (420)
..+..|..++
T Consensus 100 ~~~~~L~~~~ 109 (127)
T cd04784 100 ALEKQLQALR 109 (127)
T ss_pred HHHHHHHHHH
Confidence 3333344433
No 476
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=23.21 E-value=2.5e+02 Score=23.25 Aligned_cols=24 Identities=25% Similarity=0.103 Sum_probs=12.7
Q ss_pred hhhhhcccCCcchhhhhcccCcccc
Q 044000 87 ASKLFEVSPNRSLWISAFRGSLPTF 111 (420)
Q Consensus 87 as~lfe~s~nr~~w~~~~rgslptf 111 (420)
++++|.||++-=.|. .-.|-||.+
T Consensus 6 va~~~gvs~~tlR~y-e~~Gll~~~ 29 (103)
T cd01106 6 VAKLTGVSVRTLHYY-DEIGLLKPS 29 (103)
T ss_pred HHHHHCcCHHHHHHH-HHCCCCCCC
Confidence 345777776533222 236777543
No 477
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=23.18 E-value=1.9e+02 Score=31.47 Aligned_cols=45 Identities=16% Similarity=0.378 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHHHHhhhhc
Q 044000 154 EILDLQDAKQKIAREIKAKDSAI----------LAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 154 E~l~lQ~eIq~Lk~EIe~kD~~I----------~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
+..+.+++|+++++++.+..+.| .+++.+|+++.+.|+.+..+-+
T Consensus 414 ~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea 468 (486)
T KOG2185|consen 414 ALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEA 468 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666554433 4789999999999999875433
No 478
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=23.17 E-value=86 Score=21.28 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=12.9
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 044000 168 EIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 168 EIe~kD~~I~~lakkLKeAE 187 (420)
|++.+-..|.++-++|.+|.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45555566667777777664
No 479
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=23.10 E-value=4e+02 Score=31.94 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSL-QTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 130 s~keil~lf~s~-QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
.++.=|+.+.+. ..+=.+.++.|+.++..-+++++.+++.++.++.|.++.++++++++.|++.
T Consensus 27 ~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~ 91 (1109)
T PRK10929 27 QITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNE 91 (1109)
T ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 444444444332 1234556677888888888999999999999999999999999999888863
No 480
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=23.09 E-value=5.7e+02 Score=23.18 Aligned_cols=43 Identities=5% Similarity=0.062 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIAREIKAK 172 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~k 172 (420)
++..|.+-|+++..++-..+.+=.++-.. ++..+++++++.+.
T Consensus 21 ~~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~ 64 (126)
T PF09403_consen 21 ATASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAEL 64 (126)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888988888876665544333322 33333344444433
No 481
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=23.06 E-value=4.5e+02 Score=25.17 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=31.6
Q ss_pred CCCCCCCCCchhHHHHHHHH---HhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHH
Q 044000 119 QPPPPIDSSPSTIKEIIACF---TSLQTQLFEAVAELQE-ILDLQDAKQKIAREIKAK---DSAILAFANKIKEAERVLD 191 (420)
Q Consensus 119 ~~~~p~~~~~~s~keil~lf---~s~QtqL~eAV~ELQE-~l~lQ~eIq~Lk~EIe~k---D~~I~~lakkLKeAE~~Ld 191 (420)
...-|.+.-=...+.|++.- .+++..+++.+.|.+. ..++|.+++.|...|... ...|.+|-+.|++.+.-|.
T Consensus 80 ~~K~Pf~~~~k~~~~ifkegg~d~~k~~~~l~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK 159 (163)
T PF03233_consen 80 KSKSPFESFFKDLSKIFKEGGGDKQKQLKLLPTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIK 159 (163)
T ss_pred cCCCcHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443334444555444 3344444444444332 112233444444443322 2344555555555554444
Q ss_pred HH
Q 044000 192 IL 193 (420)
Q Consensus 192 ~~ 193 (420)
.+
T Consensus 160 ~I 161 (163)
T PF03233_consen 160 KI 161 (163)
T ss_pred hh
Confidence 43
No 482
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.04 E-value=2.8e+02 Score=32.30 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
+.++.+|+-|+++-=..+..++-+|.++|.
T Consensus 493 d~e~~rik~ev~eal~~~k~~q~kLe~sek 522 (861)
T PF15254_consen 493 DIETTRIKIEVEEALVNVKSLQFKLEASEK 522 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 456667777777766666666667766663
No 483
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=23.00 E-value=2.8e+02 Score=32.88 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=14.9
Q ss_pred cccCCChHHHHHHHhhhh
Q 044000 225 VESRLNLSDILSYAHRIS 242 (420)
Q Consensus 225 ~~~~V~~eDLIsYAHRIS 242 (420)
+++-|++.||+.+|++|=
T Consensus 354 ~~~~lDF~DL~~~a~~lL 371 (1232)
T TIGR02785 354 EKNVLDFSDLEHYALQIL 371 (1232)
T ss_pred HcCCCCHHHHHHHHHHHH
Confidence 345689999999999974
No 484
>PRK00736 hypothetical protein; Provisional
Probab=22.94 E-value=4.1e+02 Score=21.40 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
++.-.+.-|++.+..|.+-++++..-++-|..+
T Consensus 13 klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 13 RVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333333333
No 485
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=22.87 E-value=6.2e+02 Score=24.73 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=27.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSA 175 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~ 175 (420)
.|+..+|+-....+-. .+++..+++++|..|+++|..+...
T Consensus 26 eEVdeFLD~V~~dye~---~l~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 26 EEVDEFLDDVIDDYEQ---LLDENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555566655555433 3366777788888888888888774
No 486
>KOG2074 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB1 [Transcription; Replication, recombination and repair]
Probab=22.84 E-value=2e+02 Score=31.87 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=47.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 044000 137 CFTSLQTQLFEAVAELQEILDL-QDAKQ-KIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRVK 207 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~l-Q~eIq-~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KRlK 207 (420)
.|-....-+.++|..|+-+|.. +.++. ++++.|+.++- .-+-|+.+.+.++++++.|+.|.. +|++
T Consensus 478 ~fp~~t~~~~~~v~klk~~L~~~~~~~~~~~~q~ir~q~~----~t~lv~p~~q~i~~A~~k~~s~~~-rr~~ 545 (548)
T KOG2074|consen 478 RFPVNTKFLEEKVVKLKNALSNFQVKLDCAFQQDIRNQNL----STLLVRPMQQMIDTAIDKYESYLQ-RRMA 545 (548)
T ss_pred hCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 3344455588899999888875 44455 78888887442 234578999999999999988866 4543
No 487
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=22.84 E-value=6.6e+02 Score=26.95 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=8.3
Q ss_pred chHHHHHHHHHHH
Q 044000 73 LPRAQALLLQMAS 85 (420)
Q Consensus 73 l~raq~ll~~ma~ 85 (420)
+-|+...++.|++
T Consensus 262 ~~k~~~~~e~l~~ 274 (429)
T PF10037_consen 262 YGKALDAMELLAS 274 (429)
T ss_pred HHHHHHHHHHHHh
Confidence 5666666666666
No 488
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=22.81 E-value=4.6e+02 Score=21.99 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 138 FTSLQTQLFEAVAELQEILDL---------------------------------QDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 138 f~s~QtqL~eAV~ELQE~l~l---------------------------------Q~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
+......|.+-|.+||+.++- =.+|..|+.||-..+..|..+..+|-
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 044000 185 E 185 (420)
Q Consensus 185 e 185 (420)
+
T Consensus 86 ~ 86 (88)
T PF14389_consen 86 Q 86 (88)
T ss_pred h
No 489
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.80 E-value=3e+02 Score=30.25 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 126 SSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 126 ~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+.-..++++-.-++.++.. .++-..+.++..+++++|++|++..-..|+.+-+.|..+...+..-+++
T Consensus 188 p~~~~~~~yk~~v~~i~~~---~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 255 (555)
T TIGR03545 188 PNKQDLEEYKKRLEAIKKK---DIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAE 255 (555)
T ss_pred CCchhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 490
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.80 E-value=4.3e+02 Score=32.57 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYR 201 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yq 201 (420)
.+.....-+..++.++.+...++.+. +.++..++++++.....+..+.+++.+.++.++.+-.+...|+
T Consensus 349 ei~~l~~~LeELee~Lee~eeeLeel---eeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~q 417 (1486)
T PRK04863 349 KIERYQADLEELEERLEEQNEVVEEA---DEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQ 417 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=22.77 E-value=5.5e+02 Score=22.91 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 138 FTSLQTQLF------EAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 138 f~s~QtqL~------eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
|+...+.|. +-...-+.....-.+|..|+.|+...++.+.-+.+.|......||.+
T Consensus 39 L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 39 LTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 492
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.75 E-value=3.8e+02 Score=22.16 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 145 LFEAVAELQEILDL----QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 145 L~eAV~ELQE~l~l----Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+-+++.+|.++... +--++..-+..++--..++.+.++|.+||+-+..++.+
T Consensus 7 fEeal~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C~~~L~~aE~ki~~l~~~ 62 (76)
T PRK14063 7 FEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVILGE 62 (76)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 493
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=22.72 E-value=4e+02 Score=22.44 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044000 147 EAVAELQEILDL----QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSD 199 (420)
Q Consensus 147 eAV~ELQE~l~l----Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~ 199 (420)
+++++|.++... +-..+.--+.-+.--...+.+..+|..||+.++.++.++..
T Consensus 14 ~~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~Ae~~v~~l~~~~~~ 70 (81)
T COG1722 14 EALAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQAEQRVEKLLEEDEE 70 (81)
T ss_pred HHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 494
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=22.63 E-value=8e+02 Score=24.74 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
.++++++.-|.+.+.++-.-+.+|..+++. .+.+..|+...+.--..+.++......++..++.+
T Consensus 84 ~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l 149 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEEL 149 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=22.62 E-value=4.5e+02 Score=28.50 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044000 138 FTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDY 200 (420)
Q Consensus 138 f~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~y 200 (420)
|+.+..+|-+....|... ++++.+.+++++.+.+.+..+.+++.+........++..+.+
T Consensus 85 L~qRee~Lekr~e~Lekr---e~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~l 144 (514)
T TIGR03319 85 LLQREETLDRKMESLDKK---EENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGL 144 (514)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
No 496
>PHA02675 ORF104 fusion protein; Provisional
Probab=22.62 E-value=5.1e+02 Score=22.72 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 125 DSSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 125 ~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
++.-.++++=|.-|....+.+++.-.++.+. +.+|+++++..-+.+..|+||+
T Consensus 29 ~~~~esle~RL~~L~k~~~~i~~cC~~~~~~------L~RLE~H~ETLRk~Ml~L~KKI 81 (90)
T PHA02675 29 APSKESVEERLVSLLDSYKTITDCCRETGAR------LDRLERHLETLREALLKLNTKI 81 (90)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhc
No 497
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=22.59 E-value=6.5e+02 Score=23.65 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSD 199 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~ 199 (420)
.+......|...-.++...+.-++..+.- +++|....+.|-..|..|.-+.+++......++..-+|..|
T Consensus 76 ~~~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~eda~D 146 (158)
T PF09486_consen 76 ALRRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAAEDAQD 146 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHhcc
No 498
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=22.54 E-value=7.9e+02 Score=28.15 Aligned_cols=106 Identities=8% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhcccCCcchhhhhcccCcccccccCCCCCCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 76 AQALLLQMASLASKLFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKEIIACFTSLQTQLFEAVAELQEI 155 (420)
Q Consensus 76 aq~ll~~ma~las~lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~keil~lf~s~QtqL~eAV~ELQE~ 155 (420)
++.+.+.+..|-+++=+++- |++..|+-+...=-... .+.-...++.++.++....++-+..+.+++.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (910)
T TIGR00833 528 VRLMQQAISKLQGSAGDVFD----IFDPLRRFVAAIPECRA--------NPVCSVAREIVQAADTVVSSAAKLADAAGQL 595 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccCCCccc--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
......+.+..+.+....+.+.++.++|++..+.+..+
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (910)
T TIGR00833 596 ARGIADVASALSQVSGLPNALDGIGTQLAQMRESAAGV 633 (910)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.52 E-value=5.6e+02 Score=22.91 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 132 KEIIACFTSL---QTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 132 keil~lf~s~---QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
.||+++.+.. .....+.-..-+++.+++.+-+.+=.=+.+|.+.+..+..-+.+-+.....-|++
T Consensus 51 ~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 51 EEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=22.46 E-value=99 Score=28.45 Aligned_cols=23 Identities=13% Similarity=0.453 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 044000 173 DSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 173 D~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
|.++.+|+.+|++-|+.++.+|+
T Consensus 130 ~~eL~qLq~rL~qTE~~m~kil~ 152 (152)
T PF15361_consen 130 DYELAQLQERLAQTERAMEKILS 152 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Done!