Query 044000
Match_columns 420
No_of_seqs 65 out of 67
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 18:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 95.2 0.032 1.1E-06 44.9 5.7 48 138-188 21-68 (72)
2 2l5g_B Putative uncharacterize 91.2 0.44 1.5E-05 35.0 5.5 32 158-189 7-38 (42)
3 3ghg_A Fibrinogen alpha chain; 88.4 1 3.6E-05 47.3 7.9 139 60-238 35-182 (562)
4 3nmd_A CGMP dependent protein 87.3 1.6 5.4E-05 35.1 6.6 46 156-201 22-67 (72)
5 3gp4_A Transcriptional regulat 84.5 6.3 0.00022 33.6 9.5 33 159-191 87-119 (142)
6 1zxa_A CGMP-dependent protein 82.0 1.6 5.3E-05 34.6 4.3 36 159-194 24-59 (67)
7 1ykh_A RNA polymerase II media 81.2 13 0.00045 31.6 10.0 88 77-191 20-107 (108)
8 2k48_A Nucleoprotein; viral pr 80.4 15 0.00053 31.5 10.1 65 128-195 34-103 (107)
9 3oja_A Leucine-rich immune mol 79.4 12 0.00041 36.4 10.5 38 159-196 441-478 (487)
10 2ic6_A Nucleocapsid protein; h 78.2 23 0.00079 28.8 10.1 66 127-195 3-73 (78)
11 3hnw_A Uncharacterized protein 77.2 8.2 0.00028 33.5 7.8 54 145-198 60-113 (138)
12 2qyw_A Vesicle transport throu 75.7 6.8 0.00023 32.1 6.5 53 135-193 14-68 (102)
13 2xdj_A Uncharacterized protein 71.6 28 0.00095 28.1 9.0 39 156-194 30-68 (83)
14 4e61_A Protein BIM1; EB1-like 71.6 28 0.00096 29.7 9.4 58 135-195 3-60 (106)
15 4fi5_A Nucleoprotein; structur 71.1 27 0.00091 30.2 9.2 68 125-195 18-90 (113)
16 2ic9_A Nucleocapsid protein; h 71.1 30 0.001 29.1 9.4 67 127-196 3-74 (96)
17 3mq9_A Bone marrow stromal ant 71.1 16 0.00055 35.3 9.0 28 165-192 434-461 (471)
18 3oja_B Anopheles plasmodium-re 70.1 30 0.001 34.1 10.8 33 161-193 538-570 (597)
19 2pih_A Protein YMCA; regulate 69.0 17 0.00058 31.5 7.8 61 132-197 43-105 (151)
20 1jth_B Syntaxin 1A; coiled-coi 68.6 18 0.00061 27.9 7.1 12 182-193 53-64 (77)
21 3uun_A Dystrophin; triple heli 68.3 38 0.0013 25.9 11.2 75 124-198 31-116 (119)
22 3oja_B Anopheles plasmodium-re 65.7 38 0.0013 33.4 10.5 23 174-196 544-566 (597)
23 3gpv_A Transcriptional regulat 65.3 13 0.00044 31.7 6.2 9 88-96 23-31 (148)
24 2bp3_S Platelet glycoprotein I 63.8 1.8 6E-05 28.8 0.4 11 104-114 1-11 (26)
25 3t98_B Nucleoporin NUP58/NUP45 63.1 33 0.0011 28.2 8.0 69 134-202 13-86 (93)
26 2jee_A YIIU; FTSZ, septum, coi 62.8 61 0.0021 26.4 10.2 28 167-194 48-75 (81)
27 2lw1_A ABC transporter ATP-bin 61.7 33 0.0011 27.2 7.6 41 157-197 33-79 (89)
28 3gp4_A Transcriptional regulat 61.1 37 0.0013 28.8 8.2 70 128-197 62-132 (142)
29 1t3j_A Mitofusin 1; coiled coi 60.8 40 0.0014 28.2 8.2 61 134-197 30-90 (96)
30 3hnw_A Uncharacterized protein 60.8 64 0.0022 27.9 9.8 38 159-196 81-118 (138)
31 3qfl_A MLA10; coiled-coil, (CC 60.7 55 0.0019 26.7 9.0 30 172-202 53-82 (115)
32 4emc_A Monopolin complex subun 60.6 14 0.00049 34.3 5.9 59 137-198 21-79 (190)
33 1deq_A Fibrinogen (alpha chain 59.4 40 0.0014 34.3 9.4 96 62-184 40-144 (390)
34 1wt6_A Myotonin-protein kinase 57.6 39 0.0013 27.7 7.4 39 160-198 24-62 (81)
35 2efr_A General control protein 56.8 73 0.0025 28.4 9.7 44 159-202 97-140 (155)
36 3na7_A HP0958; flagellar bioge 56.6 24 0.00082 32.4 6.8 27 226-252 170-199 (256)
37 1zxa_A CGMP-dependent protein 56.0 11 0.00037 29.8 3.8 34 163-196 14-47 (67)
38 3tnu_B Keratin, type II cytosk 55.7 29 0.00099 29.1 6.6 26 171-196 79-104 (129)
39 2zqm_A Prefoldin beta subunit 54.8 78 0.0027 25.1 9.4 34 159-192 69-102 (117)
40 1gmj_A ATPase inhibitor; coile 54.4 36 0.0012 28.0 6.7 30 159-188 50-79 (84)
41 2v4h_A NF-kappa-B essential mo 54.4 40 0.0014 29.0 7.2 37 137-176 25-61 (110)
42 1lrz_A FEMA, factor essential 54.0 33 0.0011 33.3 7.6 20 169-188 283-302 (426)
43 2jee_A YIIU; FTSZ, septum, coi 53.4 58 0.002 26.6 7.7 15 136-150 6-20 (81)
44 2w83_C C-JUN-amino-terminal ki 53.3 67 0.0023 26.2 8.0 42 145-192 35-76 (77)
45 3tnu_A Keratin, type I cytoske 52.1 26 0.00088 29.6 5.7 26 171-196 81-106 (131)
46 3qne_A Seryl-tRNA synthetase, 51.9 86 0.0029 32.3 10.6 31 164-194 75-105 (485)
47 2dq0_A Seryl-tRNA synthetase; 51.8 89 0.0031 31.5 10.6 63 131-194 30-103 (455)
48 2zqm_A Prefoldin beta subunit 51.1 46 0.0016 26.5 6.9 35 159-193 12-46 (117)
49 1d7m_A Cortexillin I; coiled-c 50.6 1.1E+02 0.0039 25.8 9.3 37 156-192 28-64 (101)
50 2b9c_A Striated-muscle alpha t 50.2 57 0.0019 28.6 7.8 55 141-198 22-76 (147)
51 1deq_A Fibrinogen (alpha chain 49.4 60 0.0021 33.0 8.8 31 164-194 117-147 (390)
52 4ani_A Protein GRPE; chaperone 49.3 11 0.00038 35.1 3.3 8 350-357 196-203 (213)
53 4emc_A Monopolin complex subun 49.3 80 0.0027 29.4 8.9 46 142-190 12-57 (190)
54 1m1j_B Fibrinogen beta chain; 49.2 88 0.003 32.2 10.1 20 133-152 86-105 (464)
55 1vcs_A Vesicle transport throu 48.8 10 0.00035 31.0 2.7 51 137-192 6-56 (102)
56 2w6a_A ARF GTPase-activating p 48.3 52 0.0018 25.9 6.4 10 127-136 8-17 (63)
57 1fxk_C Protein (prefoldin); ar 47.6 64 0.0022 26.5 7.4 28 128-155 83-110 (133)
58 1wle_A Seryl-tRNA synthetase; 47.3 1E+02 0.0036 31.6 10.4 34 161-194 117-150 (501)
59 3oja_A Leucine-rich immune mol 46.9 1.4E+02 0.0047 29.0 10.7 29 159-187 448-476 (487)
60 1fxk_A Prefoldin; archaeal pro 46.8 1E+02 0.0035 24.1 8.9 35 159-193 64-98 (107)
61 1fio_A SSO1 protein; four heli 46.5 1.1E+02 0.0039 26.1 9.1 28 165-192 160-187 (196)
62 3na7_A HP0958; flagellar bioge 46.2 1.2E+02 0.0042 27.7 9.8 45 157-201 36-80 (256)
63 2oeq_A Protein of unknown func 46.2 33 0.0011 28.4 5.4 62 131-197 41-103 (122)
64 2aze_B Transcription factor E2 46.2 38 0.0013 28.3 5.8 33 156-188 9-41 (106)
65 3mtu_A Tropomyosin alpha-1 cha 46.1 44 0.0015 26.3 5.8 35 158-192 7-48 (75)
66 2zvf_A Alanyl-tRNA synthetase; 45.8 14 0.00048 31.3 3.2 52 135-186 6-58 (171)
67 2dfs_A Myosin-5A; myosin-V, in 45.0 85 0.0029 35.0 9.9 33 160-192 984-1016(1080)
68 1n7s_B Syntaxin 1A; neuronal s 44.9 82 0.0028 23.6 7.0 41 153-193 5-45 (68)
69 3hd7_B Syntaxin-1A; membrane p 43.9 80 0.0027 25.9 7.4 23 131-153 9-31 (109)
70 2f1m_A Acriflavine resistance 43.6 1.3E+02 0.0043 26.8 9.2 34 159-192 97-130 (277)
71 1lwu_C Fibrinogen gamma chain; 43.6 61 0.0021 31.8 7.6 29 159-187 25-53 (323)
72 3vkg_A Dynein heavy chain, cyt 43.3 87 0.003 39.2 10.4 71 130-200 2015-2089(3245)
73 2ke4_A CDC42-interacting prote 43.3 1.4E+02 0.0047 24.7 8.6 62 127-188 13-90 (98)
74 1m1j_C Fibrinogen gamma chain; 43.2 1.3E+02 0.0043 30.5 10.0 37 157-193 88-124 (409)
75 3hd7_B Syntaxin-1A; membrane p 43.0 84 0.0029 25.8 7.4 35 156-190 17-51 (109)
76 3iv1_A Tumor susceptibility ge 43.0 58 0.002 26.4 6.2 31 165-195 33-63 (78)
77 1ses_A Seryl-tRNA synthetase; 42.5 1.4E+02 0.0048 29.6 10.2 63 131-194 27-98 (421)
78 2v71_A Nuclear distribution pr 41.5 1.9E+02 0.0065 26.6 10.1 23 172-194 121-143 (189)
79 1q08_A Zn(II)-responsive regul 41.4 53 0.0018 25.2 5.7 9 162-170 48-56 (99)
80 3fpp_A Macrolide-specific effl 41.4 89 0.003 28.6 8.0 35 159-193 113-147 (341)
81 3v47_C Flagellin; innate immun 41.4 91 0.0031 31.8 8.7 60 122-181 18-87 (425)
82 3plt_A Sphingolipid long chain 41.2 76 0.0026 30.2 7.7 54 137-190 77-147 (234)
83 2ve7_A Kinetochore protein HEC 41.1 35 0.0012 32.8 5.5 20 157-176 189-208 (315)
84 2ve7_C Kinetochore protein NUF 40.9 28 0.00097 32.6 4.7 62 126-187 117-182 (250)
85 2aze_A Transcription factor DP 40.5 69 0.0024 28.9 6.9 37 152-188 4-40 (155)
86 3cve_A Homer protein homolog 1 40.4 1.4E+02 0.0047 23.8 8.1 47 156-202 17-63 (72)
87 3b5n_B Protein SSO1; snare com 40.1 1.1E+02 0.0036 23.1 7.0 38 155-192 5-42 (69)
88 3cvf_A Homer-3, homer protein 40.1 1.1E+02 0.0037 24.7 7.4 47 156-202 23-69 (79)
89 1joc_A EEA1, early endosomal a 40.0 83 0.0029 26.4 7.0 25 168-192 19-43 (125)
90 4dk0_A Putative MACA; alpha-ha 39.4 75 0.0026 29.3 7.2 35 160-194 115-149 (369)
91 3gpv_A Transcriptional regulat 39.4 55 0.0019 27.8 5.9 16 161-176 103-118 (148)
92 3viq_B Mating-type switching p 38.7 24 0.00081 29.1 3.3 16 180-195 50-65 (85)
93 3ljc_A ATP-dependent protease 38.5 1.3E+02 0.0044 27.2 8.5 24 75-98 133-156 (252)
94 3mq7_A Bone marrow stromal ant 37.9 2.1E+02 0.007 25.0 10.0 31 166-196 70-100 (121)
95 2aze_B Transcription factor E2 37.6 58 0.002 27.1 5.6 38 159-196 5-42 (106)
96 1fxk_A Prefoldin; archaeal pro 37.1 73 0.0025 24.9 5.9 35 159-193 7-41 (107)
97 3uul_A Utrophin; spectrin repe 37.0 1.4E+02 0.0047 22.8 11.6 74 123-196 30-114 (118)
98 2zdi_C Prefoldin subunit alpha 36.9 35 0.0012 29.0 4.3 38 156-193 12-52 (151)
99 1lwu_B Fibrinogen beta chain; 36.9 46 0.0016 32.5 5.6 43 143-185 9-53 (323)
100 3efg_A Protein SLYX homolog; x 36.6 74 0.0025 25.2 5.8 44 141-184 8-52 (78)
101 3m91_A Proteasome-associated A 36.6 1E+02 0.0035 23.0 6.2 27 145-171 21-48 (51)
102 2dfs_A Myosin-5A; myosin-V, in 36.5 1.7E+02 0.0058 32.7 10.6 13 182-194 1027-1039(1080)
103 4dzn_A Coiled-coil peptide CC- 36.3 56 0.0019 22.6 4.3 20 158-177 7-26 (33)
104 1fxk_C Protein (prefoldin); ar 36.1 78 0.0027 26.0 6.2 38 156-193 4-41 (133)
105 1lwu_C Fibrinogen gamma chain; 35.9 99 0.0034 30.3 7.8 6 390-395 304-309 (323)
106 2z5i_A TM, general control pro 35.9 91 0.0031 23.1 5.8 38 159-196 11-48 (52)
107 2zxx_A Geminin; coiled-coil, c 35.9 1.8E+02 0.006 23.7 8.1 46 139-187 23-68 (79)
108 3haj_A Human pacsin2 F-BAR; pa 35.8 1.8E+02 0.0063 28.8 9.9 25 131-155 131-155 (486)
109 3a7p_A Autophagy protein 16; c 35.7 65 0.0022 29.0 5.9 37 159-195 95-131 (152)
110 3s9g_A Protein hexim1; cyclin 35.7 1.5E+02 0.005 25.4 7.7 48 147-194 31-78 (104)
111 1ic2_A Tropomyosin alpha chain 35.5 1.6E+02 0.0053 22.9 10.0 33 160-192 34-66 (81)
112 3vmx_A Voltage-gated hydrogen 35.1 1.1E+02 0.0039 22.9 6.2 35 135-169 6-41 (48)
113 3onj_A T-snare VTI1; helix, HA 34.9 1.8E+02 0.006 23.4 9.0 19 137-155 2-20 (97)
114 2zdi_C Prefoldin subunit alpha 34.9 81 0.0028 26.8 6.2 24 129-152 94-117 (151)
115 4ghu_A TNF receptor-associated 34.9 48 0.0016 29.4 5.0 32 157-188 4-35 (198)
116 3swy_A Cyclic nucleotide-gated 34.4 1E+02 0.0036 22.7 5.8 37 131-167 7-44 (46)
117 1gmj_A ATPase inhibitor; coile 34.3 1.9E+02 0.0066 23.7 9.0 28 165-192 49-76 (84)
118 2wvr_A Geminin; DNA replicatio 34.2 2E+02 0.007 27.1 9.2 53 139-194 104-159 (209)
119 2p22_C Protein SRN2; endosome, 34.2 74 0.0025 29.0 6.2 34 163-196 131-166 (192)
120 2v71_A Nuclear distribution pr 34.1 2.8E+02 0.0095 25.5 10.6 33 160-192 88-120 (189)
121 3lay_A Zinc resistance-associa 34.1 2.2E+02 0.0076 25.5 9.2 21 174-194 113-133 (175)
122 2no2_A HIP-I, huntingtin-inter 33.5 2.1E+02 0.0071 23.8 9.9 30 159-188 53-82 (107)
123 1jcd_A Major outer membrane li 33.4 1.5E+02 0.0052 22.2 7.0 35 159-193 17-51 (52)
124 1sfc_B Protein (syntaxin 1A), 33.4 1.6E+02 0.0053 23.0 7.2 25 159-183 20-44 (83)
125 3swf_A CGMP-gated cation chann 33.2 1.4E+02 0.0049 24.0 6.9 24 133-156 11-34 (74)
126 1wle_A Seryl-tRNA synthetase; 33.1 2.4E+02 0.0084 28.9 10.5 23 174-196 123-145 (501)
127 2zvf_A Alanyl-tRNA synthetase; 33.0 45 0.0015 28.2 4.3 40 130-169 15-55 (171)
128 1io1_A Phase 1 flagellin; beta 32.9 1.5E+02 0.0053 29.2 8.7 53 128-180 12-74 (398)
129 3hh0_A Transcriptional regulat 32.7 56 0.0019 27.8 4.9 7 89-95 12-18 (146)
130 1r8e_A Multidrug-efflux transp 32.5 1.2E+02 0.0041 26.9 7.2 31 158-188 84-114 (278)
131 2xkj_E Topoisomerase IV; type 32.3 72 0.0025 34.9 6.7 22 67-88 522-543 (767)
132 1f6f_A Placental lactogen; 4-h 32.3 1.2E+02 0.0041 27.5 7.3 97 74-177 23-129 (199)
133 2oee_A UPF0342 protein YHEA; M 32.3 53 0.0018 26.5 4.4 34 159-197 67-100 (117)
134 2b5u_A Colicin E3; high resolu 32.2 1.5E+02 0.005 31.5 8.6 32 159-190 320-351 (551)
135 1wt6_A Myotonin-protein kinase 32.2 1.6E+02 0.0056 24.1 7.2 7 158-164 29-35 (81)
136 2ocy_A RAB guanine nucleotide 31.5 2.8E+02 0.0097 24.7 9.4 20 174-193 115-134 (154)
137 3rrk_A V-type ATPase 116 kDa s 31.3 1.1E+02 0.0036 28.7 7.0 38 156-193 229-270 (357)
138 1m1j_A Fibrinogen alpha subuni 31.1 2.9E+02 0.0098 29.0 10.5 103 61-190 37-148 (491)
139 1wp7_A Fusion protein; fusion 31.0 57 0.002 27.2 4.4 32 162-193 51-82 (89)
140 1t6f_A Geminin; coiled-coil, c 30.8 73 0.0025 22.8 4.3 22 161-182 8-29 (37)
141 1i84_S Smooth muscle myosin he 30.8 1.8E+02 0.0061 32.3 9.6 18 175-192 921-938 (1184)
142 3a7o_A Autophagy protein 16; c 30.5 1.3E+02 0.0043 24.5 6.2 19 162-180 20-38 (75)
143 1ic2_A Tropomyosin alpha chain 30.3 1.9E+02 0.0066 22.4 10.3 36 159-194 26-61 (81)
144 1flk_A TNF receptor associated 30.2 66 0.0023 28.9 5.2 37 151-187 32-70 (228)
145 3a7p_A Autophagy protein 16; c 30.0 3.1E+02 0.01 24.7 10.5 18 159-176 102-119 (152)
146 2dq3_A Seryl-tRNA synthetase; 29.9 1.1E+02 0.0039 30.2 7.3 30 165-194 73-102 (425)
147 4g2k_A General control protein 29.9 2.5E+02 0.0085 24.7 8.4 56 137-192 11-67 (125)
148 2hy6_A General control protein 29.7 76 0.0026 22.4 4.2 28 142-169 3-31 (34)
149 2xdj_A Uncharacterized protein 29.6 2.2E+02 0.0075 22.9 9.4 44 153-196 20-63 (83)
150 3vkg_A Dynein heavy chain, cyt 29.6 1.4E+02 0.0049 37.4 9.3 34 159-192 2041-2074(3245)
151 2w6b_A RHO guanine nucleotide 29.5 2E+02 0.0067 22.3 7.8 36 159-194 16-51 (56)
152 2k48_A Nucleoprotein; viral pr 28.9 88 0.003 26.8 5.3 33 160-192 35-67 (107)
153 1m1j_B Fibrinogen beta chain; 28.8 3.4E+02 0.012 27.9 10.6 13 230-242 215-227 (464)
154 2c0s_A Conserved domain protei 28.7 84 0.0029 24.2 4.8 41 162-202 3-50 (64)
155 4dnd_A Syntaxin-10, SYN10; str 28.7 2.7E+02 0.0094 23.7 8.8 59 129-190 67-128 (130)
156 2lw1_A ABC transporter ATP-bin 28.7 69 0.0024 25.3 4.5 25 159-183 21-45 (89)
157 2c5k_T Syntaxin TLG1, T-snare 28.5 1.3E+02 0.0044 24.5 6.2 53 129-191 36-92 (95)
158 2d4x_A Flagellar HOOK-associat 28.2 2E+02 0.0069 25.7 8.0 26 130-155 27-52 (248)
159 1sig_A Sigma70, RNA polymerase 27.6 56 0.0019 30.6 4.4 44 154-197 227-274 (339)
160 1zvu_A Topoisomerase IV subuni 27.6 90 0.0031 33.9 6.4 22 67-88 228-249 (716)
161 1c3g_A Heat shock protein 40; 27.5 18 0.00061 31.5 0.9 32 325-357 40-71 (170)
162 3qb5_K Translin-associated pro 27.4 3.7E+02 0.013 25.6 10.0 38 132-169 33-70 (290)
163 2p22_C Protein SRN2; endosome, 27.4 97 0.0033 28.2 5.7 22 130-151 39-60 (192)
164 1nkp_B MAX protein, MYC proto- 27.3 1.8E+02 0.0062 22.3 6.6 25 159-183 53-77 (83)
165 1xaw_A Occludin; coiled-coil, 27.2 36 0.0012 30.2 2.7 49 148-200 54-102 (140)
166 1xcc_A 1-Cys peroxiredoxin; un 27.1 17 0.00057 32.2 0.6 9 99-107 23-31 (220)
167 2iaz_A Hypothetical protein SP 27.1 48 0.0016 26.6 3.3 34 159-197 67-100 (113)
168 2ic6_A Nucleocapsid protein; h 27.0 1E+02 0.0035 25.1 5.1 32 161-192 6-37 (78)
169 2bzb_A Conserved domain protei 26.8 1.5E+02 0.0052 22.6 5.9 38 162-199 3-47 (62)
170 2akf_A Coronin-1A; coiled coil 26.8 1.3E+02 0.0043 20.9 4.8 20 165-184 4-23 (32)
171 2p22_A Suppressor protein STP2 26.6 1.9E+02 0.0066 26.2 7.5 32 163-194 48-79 (174)
172 3axj_A GM27569P, translin; tra 26.6 2.8E+02 0.0097 25.8 8.9 41 129-169 15-55 (249)
173 1q08_A Zn(II)-responsive regul 26.6 2.1E+02 0.0073 21.8 6.9 22 163-184 42-63 (99)
174 1nog_A Conserved hypothetical 26.5 1.6E+02 0.0054 26.5 6.9 45 132-176 49-97 (177)
175 3lss_A Seryl-tRNA synthetase; 26.4 2.4E+02 0.0082 29.0 9.0 26 169-194 113-138 (484)
176 2gkw_A TNF receptor-associated 26.1 1E+02 0.0035 26.8 5.5 31 157-187 4-34 (192)
177 3u59_A Tropomyosin beta chain; 26.1 2.6E+02 0.0088 22.5 8.6 62 140-201 10-71 (101)
178 3mq7_A Bone marrow stromal ant 25.8 3.3E+02 0.011 23.7 8.9 29 159-187 70-98 (121)
179 3kqg_A Langerin, C-type lectin 25.6 1.2E+02 0.004 25.2 5.6 40 159-198 15-54 (182)
180 3vp9_A General transcriptional 25.6 67 0.0023 26.7 3.9 17 159-175 74-90 (92)
181 1ik9_A DNA repair protein XRCC 25.5 3.8E+02 0.013 24.6 9.4 29 159-187 145-173 (213)
182 2e50_A Protein SET; histone ch 25.4 2E+02 0.0067 26.5 7.5 52 125-176 22-74 (225)
183 3uun_A Dystrophin; triple heli 25.4 2E+02 0.0069 21.7 6.5 50 130-179 10-62 (119)
184 4etp_A Kinesin-like protein KA 25.3 1.4E+02 0.0048 29.5 6.9 29 159-187 16-44 (403)
185 3k8w_A Flagellin homolog; flag 25.2 2.6E+02 0.0089 27.6 8.7 28 130-157 47-74 (326)
186 1l8d_A DNA double-strand break 25.1 2.5E+02 0.0087 22.1 10.7 38 160-197 64-101 (112)
187 3q0x_A Centriole protein; cent 25.0 3.5E+02 0.012 25.4 9.2 48 145-192 169-217 (228)
188 4fi5_A Nucleoprotein; structur 24.8 1.1E+02 0.0036 26.5 5.1 31 162-192 24-54 (113)
189 1ci6_A Transcription factor AT 24.8 2.2E+02 0.0076 21.3 6.8 27 157-183 27-53 (63)
190 1joc_A EEA1, early endosomal a 24.6 3E+02 0.01 23.0 7.9 25 148-172 13-37 (125)
191 3uul_A Utrophin; spectrin repe 24.6 1.3E+02 0.0043 23.0 5.2 49 130-178 10-61 (118)
192 3axj_B TRAX, translin associat 24.3 2E+02 0.0068 27.6 7.5 62 133-194 29-94 (298)
193 2w6a_A ARF GTPase-activating p 24.2 2.2E+02 0.0076 22.4 6.4 38 131-168 18-56 (63)
194 3qh9_A Liprin-beta-2; coiled-c 24.2 3E+02 0.01 22.6 8.3 15 165-179 59-73 (81)
195 1prx_A HORF6; peroxiredoxin, h 23.7 21 0.00072 31.6 0.6 15 347-361 177-191 (224)
196 2yy0_A C-MYC-binding protein; 23.6 1.3E+02 0.0044 22.3 4.8 29 161-189 20-48 (53)
197 3lss_A Seryl-tRNA synthetase; 23.4 3.2E+02 0.011 28.1 9.3 21 176-196 113-133 (484)
198 3ghg_C Fibrinogen gamma chain; 23.2 5.1E+02 0.017 26.3 10.6 36 159-194 90-125 (411)
199 3u1c_A Tropomyosin alpha-1 cha 23.1 3E+02 0.01 22.3 10.0 34 159-192 29-62 (101)
200 3twe_A Alpha4H; unknown functi 23.0 1.1E+02 0.0037 20.4 3.8 21 149-169 4-24 (27)
201 2ic9_A Nucleocapsid protein; h 22.8 1.2E+02 0.0041 25.5 5.0 32 161-192 6-37 (96)
202 1q06_A Transcriptional regulat 22.8 1.7E+02 0.0057 24.3 6.0 8 88-95 7-14 (135)
203 3o6x_A Glutamine synthetase; t 22.7 1.9E+02 0.0064 31.6 7.7 65 132-196 650-714 (729)
204 2yf2_A C4B binding protein; im 22.7 1.5E+02 0.005 23.2 5.1 24 149-172 30-53 (65)
205 2p4v_A Transcription elongatio 22.7 98 0.0034 26.9 4.7 44 144-187 28-73 (158)
206 2v2g_A Peroxiredoxin 6; oxidor 22.6 23 0.00077 32.0 0.6 15 347-361 173-187 (233)
207 3sbc_A Peroxiredoxin TSA1; alp 22.5 36 0.0012 31.2 2.0 15 99-114 45-59 (216)
208 2ocy_A RAB guanine nucleotide 22.5 4.2E+02 0.014 23.7 9.1 55 138-192 88-147 (154)
209 3jsv_C NF-kappa-B essential mo 22.5 2.2E+02 0.0077 23.8 6.5 37 138-177 4-40 (94)
210 1i84_S Smooth muscle myosin he 22.5 1.9E+02 0.0067 32.0 8.0 29 162-190 915-943 (1184)
211 3ilw_A DNA gyrase subunit A; D 22.5 1.4E+02 0.0047 30.9 6.4 38 159-196 415-452 (470)
212 3q8t_A Beclin-1; autophagy, AT 22.3 3.1E+02 0.011 22.2 8.5 13 180-192 66-78 (96)
213 1x4t_A Hypothetical protein LO 22.2 3.4E+02 0.012 22.6 8.8 51 122-172 14-64 (92)
214 4fm3_A Uncharacterized hypothe 22.2 97 0.0033 26.0 4.3 13 159-171 84-96 (98)
215 3he4_B Synzip5; heterodimeric 21.9 2E+02 0.0067 21.1 5.3 29 166-194 12-40 (46)
216 3pwx_A Putative flagellar HOOK 21.7 1.8E+02 0.0061 26.6 6.4 26 130-155 29-54 (239)
217 4abx_A DNA repair protein RECN 21.5 1.1E+02 0.0039 26.4 4.9 88 134-241 68-155 (175)
218 2inr_A DNA topoisomerase 4 sub 21.5 1.5E+02 0.005 31.1 6.4 30 159-188 453-482 (514)
219 2pnv_A Small conductance calci 21.5 1.1E+02 0.0038 22.2 4.0 25 142-166 4-29 (43)
220 3fs3_A Nucleosome assembly pro 21.5 3.1E+02 0.01 27.5 8.5 45 126-170 46-91 (359)
221 2p32_A Heat shock 70 kDa prote 21.4 1.1E+02 0.0038 24.9 4.5 66 129-194 11-88 (120)
222 3ke4_A Hypothetical cytosolic 21.4 1.6E+02 0.0053 27.5 6.0 61 132-192 73-150 (213)
223 2q2g_A HSP40 protein, heat sho 21.3 28 0.00095 30.6 0.9 32 325-357 46-77 (180)
224 3a6m_A Protein GRPE, HSP-70 co 21.3 2 6.8E-05 38.8 -6.5 8 193-200 45-52 (177)
225 1sum_B Phosphate transport sys 21.2 3.3E+02 0.011 23.7 7.8 52 132-183 14-66 (235)
226 2p2u_A HOST-nuclease inhibitor 21.1 4.2E+02 0.014 23.2 8.7 56 130-185 17-77 (171)
227 1gl2_B Syntaxin 7; membrane pr 21.1 2E+02 0.0069 21.4 5.6 35 158-192 7-41 (65)
228 2v66_B Nuclear distribution pr 20.9 3.9E+02 0.013 22.7 9.7 63 131-193 1-68 (111)
229 2yf2_A C4B binding protein; im 20.9 2E+02 0.0068 22.4 5.5 29 143-171 31-59 (65)
230 3c9i_A Tail needle protein GP2 20.9 5.5E+02 0.019 24.5 10.2 61 138-198 79-150 (242)
231 3okq_A BUD site selection prot 20.9 4.4E+02 0.015 23.4 9.4 24 159-182 53-76 (141)
232 4b6x_A AVRRPS4, avirulence pro 20.8 2.8E+02 0.0097 23.0 6.7 48 153-200 29-81 (90)
233 3aon_A V-type sodium ATPase su 20.8 4.7E+02 0.016 23.6 11.3 81 105-192 106-198 (217)
234 2oxj_A Hybrid alpha/beta pepti 20.7 1.9E+02 0.0064 20.4 4.8 25 142-166 3-28 (34)
235 4etp_A Kinesin-like protein KA 20.7 3E+02 0.01 27.2 8.2 34 159-192 23-56 (403)
236 2i0m_A Phosphate transport sys 20.7 3E+02 0.01 23.4 7.3 52 132-183 14-66 (216)
237 3u06_A Protein claret segregat 20.7 3.3E+02 0.011 27.1 8.6 33 159-191 23-55 (412)
238 3nr7_A DNA-binding protein H-N 20.6 3.4E+02 0.012 21.9 7.2 9 229-237 73-81 (86)
239 1woz_A 177AA long conserved hy 20.4 1.6E+02 0.0053 26.5 5.6 45 132-176 48-96 (177)
240 1j1j_A Translin; testis/brain 20.4 5.1E+02 0.017 23.9 10.4 36 134-169 15-50 (240)
241 3r6n_A Desmoplakin; spectrin r 20.3 5.9E+02 0.02 25.6 10.4 42 130-171 10-60 (450)
242 2fic_A Bridging integrator 1; 20.3 3.6E+02 0.012 23.8 8.0 65 136-200 108-198 (251)
243 1a93_B MAX protein, coiled coi 20.3 1.2E+02 0.004 21.4 3.7 21 159-179 13-33 (34)
244 3iv1_A Tumor susceptibility ge 20.3 3.4E+02 0.012 21.9 8.8 35 156-190 42-76 (78)
245 3caz_A BAR protein; thermo-aci 20.2 4.7E+02 0.016 24.9 9.0 23 174-196 149-171 (294)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=95.21 E-value=0.032 Score=44.86 Aligned_cols=48 Identities=23% Similarity=0.332 Sum_probs=39.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 138 FTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 138 f~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
+..+|..|.+++.|++.. +..|+.|+++|.+||..|+.|.++|..-+.
T Consensus 21 i~eLq~~L~~K~eELr~k---d~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQR---DALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 677788888888887554 778999999999999999999998865443
No 2
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=91.19 E-value=0.44 Score=35.02 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044000 158 LQDAKQKIAREIKAKDSAILAFANKIKEAERV 189 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~ 189 (420)
+=++|+++.+||..-.+.|..|+++|++.|..
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999998854
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.45 E-value=1 Score=47.29 Aligned_cols=139 Identities=18% Similarity=0.219 Sum_probs=95.9
Q ss_pred ccccchhhccCCCchHHHHHH--------HHHHHhhhhhhcccCCcchhhhhcccCcccccccCCCCCCCCCCCCCchhH
Q 044000 60 ACTSSTLLSLLPPLPRAQALL--------LQMASLASKLFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTI 131 (420)
Q Consensus 60 ~~~s~~ll~llppl~raq~ll--------~~ma~las~lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~ 131 (420)
.|...-+=.|-|===|-|-|| ..|.-|-++|++++-|+.-= -+-+
T Consensus 35 fCaDeDwGvkCPSGCrLQglLdkqErDltkrINELKnqLEdlsKnsKds---------------------------eqy~ 87 (562)
T 3ghg_A 35 FCSDEDWNYKCPSGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDS---------------------------HSLT 87 (562)
T ss_dssp BCCSSSBTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH---------------------------HHHH
T ss_pred cccccccCCCCCcccchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhH---------------------------HHHH
Confidence 455555556666666777665 45788889999996665421 1225
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEIL-DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRVKSEG 210 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l-~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KRlKs~~ 210 (420)
+++...|...|++-.+-...+.+.- +|++.|+.|+++|..+-..|+.|++.|++-...+.++=-|.+ . |+..-
T Consensus 88 k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId---i--qirsC- 161 (562)
T 3ghg_A 88 TNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID---I--KIRSC- 161 (562)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHG-
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHhc-
Confidence 7788888888888777777666666 889999999999999999999999998887766655432222 1 22221
Q ss_pred CCCCCCCCCCcccccccCCChHHHHHHH
Q 044000 211 GDGNDDDSGSCSTTVESRLNLSDILSYA 238 (420)
Q Consensus 211 ~~~~~e~~~~~~~A~~~~V~~eDLIsYA 238 (420)
-+.|.++...+|+.++-..+=
T Consensus 162 -------KgsCsr~~~~~vd~~sY~~~Q 182 (562)
T 3ghg_A 162 -------RGSCSRALAREVDLKDYEDQQ 182 (562)
T ss_dssp -------GGTBSCCCCCCCCHHHHHHHH
T ss_pred -------cccccchheeecchHHHHHHH
Confidence 134888888999876654443
No 4
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.33 E-value=1.6 Score=35.10 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYR 201 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yq 201 (420)
.++|..++.-..||..||..|..+.++|.+=+..+..+-.+.+.||
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4557777888888999999999999999998888888766665554
No 5
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=84.52 E-value=6.3 Score=33.56 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
+++++.|+++|+.....+..+..++..++..+.
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444554444444444444444444443
No 6
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=82.03 E-value=1.6 Score=34.63 Aligned_cols=36 Identities=14% Similarity=0.371 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+-.|..|+.+++.||..|+.+.++|.....+|....
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~~ 59 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLPVPS 59 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 556788999999999999999999998888887543
No 7
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=81.17 E-value=13 Score=31.62 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhhhhhcccCCcchhhhhcccCcccccccCCCCCCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 77 QALLLQMASLASKLFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKEIIACFTSLQTQLFEAVAELQEIL 156 (420)
Q Consensus 77 q~ll~~ma~las~lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l 156 (420)
+.|....-||.-+++|+--.=.. . | .....++++|--+|.+..- .+++|+-||
T Consensus 20 ~ELkkLn~SlL~nfLeLl~~l~~----------------~-----P--~~~~~kv~di~~lfiNmHh----LlNeyRPhQ 72 (108)
T 1ykh_A 20 QELRKLLKSLLLNYLELIGVLSI----------------N-----P--DMYERKVENIRTILVNIHH----LLNEYRPHQ 72 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCC----------------C-----G--GGHHHHHHHHHHHHHHHHH----HHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----------------C-----C--chHHHHHHHHHHHHHHHHH----HHHHhChHH
Confidence 47888888999998887432111 0 1 1235677777777777654 457999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
-++.-|.-|+..|+.|.+.|.++-+...+++..|+
T Consensus 73 ARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~~L~ 107 (108)
T 1ykh_A 73 SRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKLT 107 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998875
No 8
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=80.44 E-value=15 Score=31.45 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 128 PSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQK-----IAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 128 ~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~-----Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
-++++|+..-++....||..|-.+|++- ++..+. =++-+..|-..+..++.||.+-++.|...|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdA---e~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDA---EKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999988777544 222222 2456777888899999999999999888774
No 9
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.37 E-value=12 Score=36.37 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+.++++|++|-+...+.|.++-+++.+|.+.|..+|.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 77788888888888899999999999999988888743
No 10
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=78.20 E-value=23 Score=28.82 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=50.0
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQK-----IAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~-----Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
.-++++|+..-++.+..||..|-.+|+.-- +..+. =+.-+..|-..+..++.||.+-++.|...|.
T Consensus 3 ~M~~l~eLq~e~~~~E~QL~~A~QKLkdA~---~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 3 HMSTLKEVQDNITLHEQRLVTTRQKLKDAE---RAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999887775442 22221 2455777888899999999999999988874
No 11
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.23 E-value=8.2 Score=33.53 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 145 LFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 145 L~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
.+-|+.-..+.++++++.+.|+++++.+++.|..+=.+|..++--++.+-.+..
T Consensus 60 VLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~ 113 (138)
T 3hnw_A 60 DMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIK 113 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777777777777776666666665555555544433
No 12
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=75.65 E-value=6.8 Score=32.13 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=40.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 135 IACFTSLQTQLFEAVAELQEILDLQDAKQKIAR--EIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 135 l~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~--EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
-++|++...++.....++... +.+|.. .-++|...|+++.+.|.||+.+|+.+
T Consensus 14 SelFe~YE~df~~l~~~i~~k------l~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qM 68 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGV------PERLLGTAGTEEKKKLVRDFDEKQQEANETLAEM 68 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999988888877444 444432 23788888999999999999998884
No 13
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=71.56 E-value=28 Score=28.15 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.+++++|.+|+..||...-.|.++.++.|+.-..||+.+
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl 68 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777777777778888888888888777777776543
No 14
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=71.55 E-value=28 Score=29.66 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=44.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 135 IACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 135 l~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
|..+-++|++|.++-.++. ++++++..|+..|+...+.=--+=.||++.|-.+....+
T Consensus 3 ~~s~~al~~eL~~~~~ei~---~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~ 60 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIG---SLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888887777664 457788888888887777766788999999999988764
No 15
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=71.12 E-value=27 Score=30.24 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=51.5
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 125 DSSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQK-----IAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 125 ~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~-----Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
.++.-+++||..-++....||..|-.+|++- ++..+. =+.-+..|-..+..++.||.+-++.|...|.
T Consensus 18 ~~~~~~ieeLq~Ei~~~E~QL~~ArQKLkdA---~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 18 GPGSMTMEELQREINAHEGQLVIARQKVRDA---EKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999998777554 222222 2456778888999999999999999998874
No 16
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=71.11 E-value=30 Score=29.13 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=51.4
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQK-----IAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~-----Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
.-++++|+..-++.+..||..|-.+|+.- ++..+. =+.-+..|-..+..|+.||.+-++.|...|..
T Consensus 3 ~M~~i~eLq~e~~~~E~QL~~A~QKLkdA---~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~ 74 (96)
T 2ic9_A 3 HMSTLKEVQDNITLHEQRLVTTRQKLKDA---ERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAA 74 (96)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34689999999999999999988777544 222222 24557788888999999999999999998853
No 17
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.07 E-value=16 Score=35.33 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=11.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 165 IAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 165 Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
|++++....++|.++..++++-++.|.+
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444443
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.12 E-value=30 Score=34.14 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+.+++++|+++.++.+....+++++..+.++..
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 333344444455555555555555555554444
No 19
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=68.97 E-value=17 Score=31.46 Aligned_cols=61 Identities=10% Similarity=0.158 Sum_probs=32.6
Q ss_pred HHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 132 KEIIACFTSLQTQLFEAVAE--LQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~E--LQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
++++.-|..+|.++.++-.- .....+..+++++++++|..-+ ..+.+++||+.|..++++.
T Consensus 43 q~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~~np-----~V~~y~~Ae~~l~~LL~~I 105 (151)
T 2pih_A 43 STIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEEIP-----VIQEFRDSQMEVNDLLQLV 105 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHSH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHHHHHHH
Confidence 44444555555554443211 1123334566666666665433 4456777777777777553
No 20
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=68.59 E-value=18 Score=27.91 Aligned_cols=12 Identities=8% Similarity=-0.111 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 044000 182 KIKEAERVLDIL 193 (420)
Q Consensus 182 kLKeAE~~Ld~~ 193 (420)
..+.|...|..+
T Consensus 53 ~v~~g~~~L~kA 64 (77)
T 1jth_B 53 YVERAVSDTKKA 64 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 21
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=68.26 E-value=38 Score=25.88 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=51.7
Q ss_pred CCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 124 IDSSPSTIKEIIACFTSLQTQLFEAVAELQEILDL-----------QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 124 ~~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l-----------Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.+....++++.+.-+..++..+...-..+....+. ......|+..+......|..+.....+=.+.|+.
T Consensus 31 ~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~ 110 (119)
T 3uun_A 31 ISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHR 110 (119)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777776666666655444444333332 2234568888888999999999999999999999
Q ss_pred Hhhhhc
Q 044000 193 LVDDYS 198 (420)
Q Consensus 193 ~VdD~~ 198 (420)
++.+.-
T Consensus 111 aL~~~Q 116 (119)
T 3uun_A 111 VLMDLQ 116 (119)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 886543
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.69 E-value=38 Score=33.40 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 044000 174 SAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 174 ~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+.+.++.+++++.++.+..+-++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHH
Confidence 33334444444444444444444
No 23
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=65.25 E-value=13 Score=31.73 Aligned_cols=9 Identities=11% Similarity=0.243 Sum_probs=4.5
Q ss_pred hhhhcccCC
Q 044000 88 SKLFEVSPN 96 (420)
Q Consensus 88 s~lfe~s~n 96 (420)
++++.||+.
T Consensus 23 A~~~gvs~~ 31 (148)
T 3gpv_A 23 AKMQHLTIS 31 (148)
T ss_dssp HHHTTCCHH
T ss_pred HHHHCcCHH
Confidence 345555543
No 24
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=63.82 E-value=1.8 Score=28.81 Aligned_cols=11 Identities=82% Similarity=1.174 Sum_probs=9.5
Q ss_pred cccCccccccc
Q 044000 104 FRGSLPTFLSS 114 (420)
Q Consensus 104 ~rgslptfl~s 114 (420)
++||||||-+|
T Consensus 1 lqgslptfrss 11 (26)
T 2bp3_S 1 LRGSLPTFRSS 11 (26)
T ss_pred CCccccchhhe
Confidence 58999999876
No 25
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=63.14 E-value=33 Score=28.21 Aligned_cols=69 Identities=19% Similarity=0.353 Sum_probs=50.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 134 IIACFTSLQTQLFEAVAELQEILDLQDA-----KQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 134 il~lf~s~QtqL~eAV~ELQE~l~lQ~e-----Iq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
.+.-|+..-.....-++++..|+..+.. -+.|..-+....+....+|.++...+..++.+-++|-+||+
T Consensus 13 lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr 86 (93)
T 3t98_B 13 LVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRK 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455556666666555332 26788889999999999999999999999999999988866
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=62.81 E-value=61 Score=26.41 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=19.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 167 REIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 167 ~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
...+.++..+.++......-+..|+.++
T Consensus 48 ~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 48 HQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333377777777777777777777776
No 27
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.73 E-value=33 Score=27.17 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHH-----hh-HHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 157 DLQDAKQKIAREIKA-----KD-SAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~-----kD-~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
+++.+|..|+.++.. .| ..+..+.++|.+++..|+.+.+..
T Consensus 33 ~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 33 DLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666643 23 356778888888888888876554
No 28
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=61.06 E-value=37 Score=28.81 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 128 PSTIKEIIACFTSLQTQLFEAVAELQEIL-DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 128 ~~s~keil~lf~s~QtqL~eAV~ELQE~l-~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
-..+++++.+++.-+..+.+....|++++ .++++|+.|++-++..+..|..+...+...+..+...=-+|
T Consensus 62 L~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~ 132 (142)
T 3gp4_A 62 IEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVER 132 (142)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Confidence 34555555555443333444444454443 34788888888888888888888888888877776643333
No 29
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=60.82 E-value=40 Score=28.23 Aligned_cols=61 Identities=11% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 134 IIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 134 il~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
+..=|...=++|...|.+.+ .+++.+|.+|.+||...|..+ .-+|.||.==..|++-+++|
T Consensus 30 VQqELs~tfarLc~~Vd~t~--~eL~~EI~~L~~eI~~LE~iq-s~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 30 VQQEMATTFARLCQQVDMTQ--KHLEEEIARLSKEIDQLEKMQ-NNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp -----CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHH
Confidence 33344455566777777765 446889999999999988654 45688887556666666654
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.81 E-value=64 Score=27.93 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+++++.+++|+...-..+.....++.++++.++.+-++
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333
No 31
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=60.73 E-value=55 Score=26.70 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 172 KDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 172 kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
.|..++...++|+++=...+.+||+|. |+.
T Consensus 53 ~d~~vk~W~~~vrdlaYD~ED~iD~f~-~~~ 82 (115)
T 3qfl_A 53 LDSQDKLWADEVRELSYVIEDVVDKFL-VQV 82 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 588899999999999999999999987 643
No 32
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.57 E-value=14 Score=34.29 Aligned_cols=59 Identities=10% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 137 CFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
|..+++.+....-.+++ .++++|.+|++++.+....+..+..++......+....|=|.
T Consensus 21 LV~~L~~En~~L~~ql~---~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e 79 (190)
T 4emc_A 21 LVANLVNENFVLSEKLD---TKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYE 79 (190)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHH
Confidence 34444444433333333 336677777777777776666666666555554444444333
No 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.44 E-value=40 Score=34.31 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=48.9
Q ss_pred ccchhhccCCCchHHHHHH--------HHHHHhhhhhhcccCCcchhhhhcccCcccccccCCCCCCCCCCCCCchhHHH
Q 044000 62 TSSTLLSLLPPLPRAQALL--------LQMASLASKLFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIKE 133 (420)
Q Consensus 62 ~s~~ll~llppl~raq~ll--------~~ma~las~lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~ke 133 (420)
...-+=.+-|===|-|-+| ..|..|-.+||+++-+-. ..-+-+++
T Consensus 40 ~DeDwG~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~---------------------------~~~~y~~~ 92 (390)
T 1deq_A 40 SDEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSK---------------------------DSNTLTKN 92 (390)
T ss_pred chhhccCCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh---------------------------HHHHHHHH
Confidence 3444555555555666555 457788888888764321 12245666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 134 IIACFTSLQTQLFEAVAELQEI-LDLQDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 134 il~lf~s~QtqL~eAV~ELQE~-l~lQ~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
|..++...|++.-+-...+.+. .+|+++|.-|++-|+.+=..|+.|++.|+
T Consensus 93 ~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~ 144 (390)
T 1deq_A 93 IVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVR 144 (390)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 7777777766633333222222 12344444444444444444444444433
No 34
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=57.58 E-value=39 Score=27.72 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
+.++.|..|+..--.....++++|+++|..-..+..+..
T Consensus 24 qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~ 62 (81)
T 1wt6_A 24 LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVR 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666778888899999988888876643
No 35
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=56.82 E-value=73 Score=28.40 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
++.+..|+++|...+..+..--.+.+.....|+..+.+...|+.
T Consensus 97 ERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~ 140 (155)
T 2efr_A 97 ERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLS 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67777888888888888888888888888888887766655533
No 36
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.62 E-value=24 Score=32.41 Aligned_cols=27 Identities=7% Similarity=-0.114 Sum_probs=15.9
Q ss_pred ccCCChHHHHHHHhhhh---cccCCCCCCC
Q 044000 226 ESRLNLSDILSYAHRIS---YTTFAPPEFG 252 (420)
Q Consensus 226 ~~~V~~eDLIsYAHRIS---~TTsAPp~wq 252 (420)
...|+.+-|-.|=+-.. +...+|..=+
T Consensus 170 ~~~i~~~lL~~Yerir~~~~g~avv~v~~~ 199 (256)
T 3na7_A 170 VEKTEPKIYSFYERIRRWAKNTSIVTIKKQ 199 (256)
T ss_dssp HHTSCHHHHHHHHHHHHHHGGGSEEECBTT
T ss_pred HhcCCHHHHHHHHHHHHhCCCceEEEeeCC
Confidence 34687777777754332 3457777633
No 37
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=56.04 E-value=11 Score=29.82 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 163 QKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 163 q~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+.+.+.|..||..|.+++..|.+.+..+..+=..
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~ 47 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRK 47 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777666654433
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.66 E-value=29 Score=29.13 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=11.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 171 AKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 171 ~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
.....|..+...|..+...++.-+.+
T Consensus 79 ~~q~~i~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 39
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=54.82 E-value=78 Score=25.09 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
...+..|++.++..+..|..+.++++..+..+..
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555444444444
No 40
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=54.37 E-value=36 Score=28.00 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
+.+|..-++||+.....|....+++++.+.
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444445555555555555555554443
No 41
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=54.37 E-value=40 Score=29.02 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=29.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 044000 137 CFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAI 176 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I 176 (420)
-++.+..+|..|-+.|.+ +|++|..|++||..++..+
T Consensus 25 ei~~L~~~L~~AEeaL~~---Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVA---KQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 467777888888777755 5999999999999998854
No 42
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=53.98 E-value=33 Score=33.29 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=9.0
Q ss_pred HHHhhHHHHHHHHHHHHHHH
Q 044000 169 IKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 169 Ie~kD~~I~~lakkLKeAE~ 188 (420)
+++.++.|..+.+++.+++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~ 302 (426)
T 1lrz_A 283 RDNLQQQLDANEQKIEEGKR 302 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444544443
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=53.40 E-value=58 Score=26.58 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=6.6
Q ss_pred HHHHhhHHHHHHHHH
Q 044000 136 ACFTSLQTQLFEAVA 150 (420)
Q Consensus 136 ~lf~s~QtqL~eAV~ 150 (420)
++|+.+.+...+||.
T Consensus 6 ElleqLE~KIq~avd 20 (81)
T 2jee_A 6 EVFEKLEAKVQQAID 20 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 44
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=53.35 E-value=67 Score=26.17 Aligned_cols=42 Identities=31% Similarity=0.328 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 145 LFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 145 L~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
|+..|.|| --+...|+.|+++.-.....+..++++.|..|..
T Consensus 35 LI~rvdEL------t~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 35 LIAKVDEL------TCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555544 5667788888888888888888888888877653
No 45
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.07 E-value=26 Score=29.59 Aligned_cols=26 Identities=4% Similarity=0.052 Sum_probs=11.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 171 AKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 171 ~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
.....|..+...|..+...+...+.+
T Consensus 81 ~~q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 46
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.85 E-value=86 Score=32.31 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=21.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 164 KIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 164 ~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.|.+|+......|.++..+|++.+..|..++
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777776655
No 47
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=51.84 E-value=89 Score=31.46 Aligned_cols=63 Identities=11% Similarity=0.173 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILD-LQDAK----------QKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~-lQ~eI----------q~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+.+|+++- ..-++|...+.+|+.... +.++| ++|.+++......|.++.+++++.+..|..++
T Consensus 30 ~~~~~~l~-~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 30 VDEILKLD-TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 333444444444443332 23333 34666777777777777777777777777765
No 48
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=51.09 E-value=46 Score=26.46 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
..+.+++++++......+..+..++++++.+++.+
T Consensus 12 i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 12 LGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666677777777777664
No 49
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=50.65 E-value=1.1e+02 Score=25.76 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.+++.....|+.|-+.|+..|++++.++.++=+-|+.
T Consensus 28 ~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~ 64 (101)
T 1d7m_A 28 DQLNSLLASLESEGAEREKRLRELEAKLDETLKNLEL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 3446667889999999999999999999988776663
No 50
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=50.18 E-value=57 Score=28.57 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 141 LQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 141 ~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
.+..|.++-+...+. ++.+..|+..-..-|..|..+-.+||+|..+...+-..|.
T Consensus 22 a~~kLeeaek~adE~---eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKye 76 (147)
T 2b9c_A 22 ALQKLEEAEKAADES---ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 76 (147)
T ss_dssp HHHHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444333 4445555555556677788888888888777777665554
No 51
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=49.36 E-value=60 Score=33.04 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=20.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 164 KIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 164 ~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.|++.|+..++.|..-..+|+.-+.+|+..+
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~ 147 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQL 147 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5666666666666554447877777755554
No 52
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=49.28 E-value=11 Score=35.07 Aligned_cols=8 Identities=50% Similarity=0.750 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 044000 350 GWKPGDAV 357 (420)
Q Consensus 350 gWKpGDPi 357 (420)
||+-||-|
T Consensus 196 GY~l~dRV 203 (213)
T 4ani_A 196 GYKLKDRV 203 (213)
T ss_dssp CCEETTSC
T ss_pred CeEECCEE
Confidence 44444443
No 53
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=49.27 E-value=80 Score=29.37 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 142 QTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 142 QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
|.||-.+..+. .+++.+...|..+++.|+..|.++.++|..++...
T Consensus 12 q~ql~~ad~LV---~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 12 KQQIDSADLLV---ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp --------CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444443 33355666666666666666666666665555544
No 54
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=49.24 E-value=88 Score=32.23 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=8.3
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 044000 133 EIIACFTSLQTQLFEAVAEL 152 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~EL 152 (420)
.|+..|.+.|+.+-+.+.+|
T Consensus 86 ~l~D~L~k~q~~V~~~LqeL 105 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKPVLRDL 105 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHhHHHHH
Confidence 34444444444333333333
No 55
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=48.81 E-value=10 Score=31.03 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=24.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 137 CFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+|++...++.....++...+.. +..+ .-+.|...|+++.+.|.||+.+|+.
T Consensus 6 lFe~YE~df~~l~~~i~~kl~~---i~~~--~geerk~~i~~ie~~l~EA~ell~q 56 (102)
T 1vcs_A 6 SGEGYEQDFAVLTAEITSKIAR---VPRL--PPDEKKQMVANVEKQLEEARELLEQ 56 (102)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHH---GGGS--CTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhcc--CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555433331 1111 1234455555555555555555554
No 56
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=48.33 E-value=52 Score=25.90 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=4.5
Q ss_pred CchhHHHHHH
Q 044000 127 SPSTIKEIIA 136 (420)
Q Consensus 127 ~~~s~keil~ 136 (420)
++.+..|.++
T Consensus 8 gpit~qeyle 17 (63)
T 2w6a_A 8 GAVTLQEYLE 17 (63)
T ss_dssp CSSCHHHHHH
T ss_pred CcchHHHHHH
Confidence 3444555444
No 57
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=47.57 E-value=64 Score=26.53 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 128 PSTIKEIIACFTSLQTQLFEAVAELQEI 155 (420)
Q Consensus 128 ~~s~keil~lf~s~QtqL~eAV~ELQE~ 155 (420)
-.+.+|++++|+.+-..|-+..+.+++.
T Consensus 83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~ 110 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNELESTLQKMGEN 110 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999988877776666666443
No 58
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=47.35 E-value=1e+02 Score=31.59 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
++++|.+|+......|.++..++++.+..|..++
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666667777777777777777776655
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.93 E-value=1.4e+02 Score=29.00 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
.++.+++++++++.|..|...-.+|++|-
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 448 AEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 33445555555555555555555555543
No 60
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=46.76 E-value=1e+02 Score=24.08 Aligned_cols=35 Identities=3% Similarity=0.116 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
...+..|++.++..+..|..+.++++..+..+..+
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666655555543
No 61
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=46.51 E-value=1.1e+02 Score=26.11 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=21.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 165 IAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 165 Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.-.+|++|+..|+++.+.+.|-+++.-.
T Consensus 160 ~l~~i~eR~~eI~~IE~sI~EL~qiF~D 187 (196)
T 1fio_A 160 ALAEVQARHQELLKLEKSMAELTQLFND 187 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888887766443
No 62
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=46.23 E-value=1.2e+02 Score=27.68 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYR 201 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yq 201 (420)
++++++..++..+......+.++.++++..+..++.+-....+|+
T Consensus 36 ~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 36 KALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555555555555555544444343
No 63
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=46.22 E-value=33 Score=28.35 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQ-EILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQ-E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
.+.++.-|..+|.++.++-.-=+ -+.+..+++++++++|..-+ ..+.+++||+.|..++++-
T Consensus 41 a~~li~~F~~~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~~n~-----~v~~~~~Ae~~l~~ll~~I 103 (122)
T 2oeq_A 41 AYRMFANVRDIQLRLHEKQMRGAAILPDEIEQAQKAMALAQQNE-----KLARLMALEQQMSITIAEV 103 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTSH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544321110 11233566666666665433 4567788888888888664
No 64
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=46.21 E-value=38 Score=28.26 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
..+++++..|.++-+..|+.|..++.+|+..-.
T Consensus 9 ~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 9 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677777777777777777777777666553
No 65
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=46.10 E-value=44 Score=26.25 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHH
Q 044000 158 LQDAKQKIAREIKAKDSAILAFAN-------KIKEAERVLDI 192 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~~lak-------kLKeAE~~Ld~ 192 (420)
++++|+.|+.|.++--..+..+.+ ||+++|.....
T Consensus 7 iKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~ 48 (75)
T 3mtu_A 7 IKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQE 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 367788888888888888888888 99999877665
No 66
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=45.83 E-value=14 Score=31.32 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=30.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 044000 135 IACFTSLQTQLFEAVAELQEI-LDLQDAKQKIAREIKAKDSAILAFANKIKEA 186 (420)
Q Consensus 135 l~lf~s~QtqL~eAV~ELQE~-l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeA 186 (420)
+..|...+..|-+.-..|... -++-.++++|..|+.+..+.|.++..+|...
T Consensus 6 ~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 6 IEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp THHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444311 2456667777777777777777777766554
No 67
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.02 E-value=85 Score=35.02 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.++..|+.|+++.++.+....+.+++.|..++.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~ 1016 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544444433
No 68
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=44.87 E-value=82 Score=23.64 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 153 QEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 153 QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
.+.+.++++|.+|++.|.+...-..+|+.-..+=...|+++
T Consensus 5 ~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~I 45 (68)
T 1n7s_B 5 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI 45 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34455577777777777777777777777666666666554
No 69
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=43.91 E-value=80 Score=25.90 Aligned_cols=23 Identities=4% Similarity=0.203 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQ 153 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQ 153 (420)
+|..+......+.++.+--+.+.
T Consensus 9 a~~~l~~i~eR~~eI~~Ie~~I~ 31 (109)
T 3hd7_B 9 SKQALSEIETRHSEIIKLENSIR 31 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444443
No 70
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=43.58 E-value=1.3e+02 Score=26.76 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++++++.+.+++.....+.+...+|+.++..|+.
T Consensus 97 ~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~ 130 (277)
T 2f1m_A 97 KQEYDQALADAQQANAAVTAAKAAVETARINLAY 130 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555555555555555555555554443
No 71
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=43.55 E-value=61 Score=31.81 Aligned_cols=29 Identities=3% Similarity=0.160 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
+.+|+.|+..++..+..|.++..++.+-+
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666655444
No 72
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.29 E-value=87 Score=39.24 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEIL----DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDY 200 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l----~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~y 200 (420)
..+++-.-|...+++|.++-++|++.. +++++.++..+|.+.....+...+++|..|++.+..+-++..+.
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 344444455555555655555554432 23555555566666677778888899999999999887766554
No 73
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=43.27 E-value=1.4e+02 Score=24.68 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=40.8
Q ss_pred CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 127 SPSTIKEIIACFTSLQTQLFEAVAELQEILDL----------------QDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 127 ~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l----------------Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
+-...|-|...++.+++++......-.-..++ +.++......|+.+...+..|+.-|.++|.
T Consensus 13 peqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677888888888888877766654444443 556666666666666666666666666654
No 74
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=43.16 E-value=1.3e+02 Score=30.46 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
++..+|.+|+.-|...+..|+.++.+|+..+.-|+.+
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHH
Confidence 3455666666666667777777777777666555543
No 75
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=42.96 E-value=84 Score=25.77 Aligned_cols=35 Identities=9% Similarity=0.150 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
+.++++|.+|++.|.+...-..+++.-..+=...|
T Consensus 17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~I 51 (109)
T 3hd7_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMI 51 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34466666665555555555554444444333333
No 76
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=42.96 E-value=58 Score=26.40 Aligned_cols=31 Identities=6% Similarity=0.216 Sum_probs=16.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 165 IAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 165 Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
.+.|+..-...|..+.++|+.=+..|+..|+
T Consensus 33 T~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~ 63 (78)
T 3iv1_A 33 TEEDLKKGHQKLEEMVTRLDQEVAEVDKNIE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555543
No 77
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=42.45 E-value=1.4e+02 Score=29.61 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDL-Q--------DAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~l-Q--------~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+.+|+++- ..-+++...+.+|+..... . .+.++|.+++......|.++..++++.+..|..++
T Consensus 27 ~~~~~~~~-~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 27 LEALLALD-REVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543 3344444445555444332 1 34566778888888888888888888888887765
No 78
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=41.48 E-value=1.9e+02 Score=26.56 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 044000 172 KDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 172 kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.....+..+..|.+.+.-|..+|
T Consensus 121 lEr~~R~~~~SleD~e~kln~ai 143 (189)
T 2v71_A 121 LERAKRATIMSLEDFEQRLNQAI 143 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333344444444444444443
No 79
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=41.44 E-value=53 Score=25.23 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 044000 162 KQKIAREIK 170 (420)
Q Consensus 162 Iq~Lk~EIe 170 (420)
++.|+++|+
T Consensus 48 ~~~l~~~i~ 56 (99)
T 1q08_A 48 LQEVEARIA 56 (99)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 80
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=41.43 E-value=89 Score=28.56 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+++++..+.+++.....+.....+|+.++..|+.+
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a 147 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTA 147 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666667777777777777666654
No 81
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=41.42 E-value=91 Score=31.78 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHH
Q 044000 122 PPIDSSPSTIKEIIACFTSLQTQLFEAVAELQEILDL----------QDAKQKIAREIKAKDSAILAFAN 181 (420)
Q Consensus 122 ~p~~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l----------Q~eIq~Lk~EIe~kD~~I~~lak 181 (420)
--+.....++.+.+++|..-+..|-+...-||...+| ...++.|+.||+.+-..|..+++
T Consensus 18 ~gl~Qa~rN~~dgiS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian 87 (425)
T 3v47_C 18 KGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSN 87 (425)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778889999999999999999888888877766 45566777777776666666665
No 82
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=41.19 E-value=76 Score=30.17 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHH
Q 044000 137 CFTSLQTQLFEAVAELQEILDL-----------QDAKQKIAREIKAKD------SAILAFANKIKEAERVL 190 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~l~l-----------Q~eIq~Lk~EIe~kD------~~I~~lakkLKeAE~~L 190 (420)
-+-..+.++......++.++|- -+.+++|..+|.... ..|..+..+|..||...
T Consensus 77 e~ge~e~~~a~~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~ 147 (234)
T 3plt_A 77 ELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAES 147 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHh
Confidence 3445566677778877777765 222333444444332 45666666776666554
No 83
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=41.14 E-value=35 Score=32.78 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q 044000 157 DLQDAKQKIAREIKAKDSAI 176 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I 176 (420)
.++.++++|++||++.++.+
T Consensus 189 ~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 189 SLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 84
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=40.90 E-value=28 Score=32.57 Aligned_cols=62 Identities=6% Similarity=0.038 Sum_probs=26.2
Q ss_pred CCchhHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 126 SSPSTIKEIIACFTSL----QTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 126 ~~~~s~keil~lf~s~----QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
+.+.+++.+||.|-+- +.++....+.+++.-.+..+++++++|..+....|.++.+++++.+
T Consensus 117 P~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 117 PKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567778887754432 2333322233333333455555555555555555555555554444
No 85
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=40.49 E-value=69 Score=28.87 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 152 LQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 152 LQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
+|+..+++.++++++..|+.|.+.+++|..|...-+.
T Consensus 4 ~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafkn 40 (155)
T 2aze_A 4 AQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKN 40 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999999999999888888877554433
No 86
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=40.41 E-value=1.4e+02 Score=23.80 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
..++.+++.+++.++.--..=..+...|+.+-.+|+.=|++-++++.
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq 63 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44577777788888777777777888888888888888887777755
No 87
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=40.15 E-value=1.1e+02 Score=23.13 Aligned_cols=38 Identities=8% Similarity=0.154 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 155 ILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 155 ~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.+.++++|.+|++.|.+...-..+|+.-..+=...|++
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~ 42 (69)
T 3b5n_B 5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDV 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445555555555555555555555544444444443
No 88
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.13 E-value=1.1e+02 Score=24.74 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa 202 (420)
..++.+++.|++.++.--..=..+...|+.+-.+|+.=|++-++++.
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRq 69 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELRE 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34577777777777777777777778888888888887777776654
No 89
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.03 E-value=83 Score=26.39 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=10.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 168 EIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 168 EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
||+.....+..+.++|.+.+..+..
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~e 43 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQE 43 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443
No 90
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=39.43 E-value=75 Score=29.32 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
++++..+.+++.....+.....+|+.++..|+.+-
T Consensus 115 ~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~ 149 (369)
T 4dk0_A 115 DTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAE 149 (369)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666677777777777777777654
No 91
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=39.41 E-value=55 Score=27.78 Aligned_cols=16 Identities=6% Similarity=0.268 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhHHH
Q 044000 161 AKQKIAREIKAKDSAI 176 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I 176 (420)
+++.|+++|+.....+
T Consensus 103 ~~~~l~~~i~~L~~~~ 118 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNL 118 (148)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444333333
No 92
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=38.65 E-value=24 Score=29.06 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 044000 180 ANKIKEAERVLDILVD 195 (420)
Q Consensus 180 akkLKeAE~~Ld~~Vd 195 (420)
=|.+|++=+.|-..|.
T Consensus 50 YNeiKD~gq~L~g~iA 65 (85)
T 3viq_B 50 YNEIRDIALGMIGKVA 65 (85)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3566666666666653
No 93
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=38.52 E-value=1.3e+02 Score=27.16 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhhhhhcccCCcc
Q 044000 75 RAQALLLQMASLASKLFEVSPNRS 98 (420)
Q Consensus 75 raq~ll~~ma~las~lfe~s~nr~ 98 (420)
...+|...+..+..+++++++.-+
T Consensus 133 e~~al~~~l~~~~~~~~~l~~~~~ 156 (252)
T 3ljc_A 133 EQEVLVRTAISQFEGYIKLNKKIP 156 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC
Confidence 345566566666666666655443
No 94
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.92 E-value=2.1e+02 Score=25.05 Aligned_cols=31 Identities=13% Similarity=0.346 Sum_probs=19.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 166 AREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 166 k~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
++.|++....|..+-.+|++++..++++-.+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345556666666666777777777776443
No 95
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=37.60 E-value=58 Score=27.13 Aligned_cols=38 Identities=8% Similarity=0.199 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
..+++.|++||+..+..-+.|=..++.+.+.|.++.+|
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45688999999999999999999999999999998865
No 96
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=37.08 E-value=73 Score=24.94 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
..+.+++++++......+..+..++++++.+++.+
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555566666677777777777664
No 97
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=36.95 E-value=1.4e+02 Score=22.76 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=50.3
Q ss_pred CCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 123 PIDSSPSTIKEIIACFTSLQTQLFEAVAELQEILDL-----------QDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 123 p~~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~l-----------Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
|.+....++++.+.-+..++..|...-..+....+. ......|+..+......|..+..+..+=.+.|+
T Consensus 30 ~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~ 109 (118)
T 3uul_A 30 DISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLH 109 (118)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777776666666554433333333222 234566888888999999999999999999999
Q ss_pred HHhhh
Q 044000 192 ILVDD 196 (420)
Q Consensus 192 ~~VdD 196 (420)
.++..
T Consensus 110 ~aL~~ 114 (118)
T 3uul_A 110 DALME 114 (118)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 98
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=36.94 E-value=35 Score=29.05 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAF---ANKIKEAERVLDIL 193 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~l---akkLKeAE~~Ld~~ 193 (420)
++++..++.++.+++..-..+..+ ..++.|++..|+.+
T Consensus 12 ~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l 52 (151)
T 2zdi_C 12 EKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENL 52 (151)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888888 99999999999884
No 99
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=36.93 E-value=46 Score=32.54 Aligned_cols=43 Identities=7% Similarity=0.158 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 143 TQLFEAVAELQEILD--LQDAKQKIAREIKAKDSAILAFANKIKE 185 (420)
Q Consensus 143 tqL~eAV~ELQE~l~--lQ~eIq~Lk~EIe~kD~~I~~lakkLKe 185 (420)
++|-+.....+++++ ..+.|+.|+.+++..+++|.+|..++.+
T Consensus 9 ~~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~ 53 (323)
T 1lwu_B 9 KEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKT 53 (323)
T ss_dssp HHHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444432 3557778888888888888888777654
No 100
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.65 E-value=74 Score=25.24 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 044000 141 LQTQLFEAVAELQEILDL-QDAKQKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 141 ~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EIe~kD~~I~~lakkLK 184 (420)
++..|-+.+.+|...+-- ++.|+.|...|-.....|..+.++|+
T Consensus 8 ~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 8 RDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444333 34445555555555444444444443
No 101
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=36.55 E-value=1e+02 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 044000 145 LFEAVAELQEILDL-QDAKQKIAREIKA 171 (420)
Q Consensus 145 L~eAV~ELQE~l~l-Q~eIq~Lk~EIe~ 171 (420)
|.+...+|.+.++. .++|.+|+.||+.
T Consensus 21 L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 21 LAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433 5667777777664
No 102
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.50 E-value=1.7e+02 Score=32.67 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 044000 182 KIKEAERVLDILV 194 (420)
Q Consensus 182 kLKeAE~~Ld~~V 194 (420)
+|++.-+.|+.-+
T Consensus 1027 ~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1027 ELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 103
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.27 E-value=56 Score=22.60 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 044000 158 LQDAKQKIAREIKAKDSAIL 177 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~ 177 (420)
+.++|.+|++||....-.|.
T Consensus 7 lkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444443
No 104
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.05 E-value=78 Score=26.02 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
++++..++.++.+++..-..+..+..++.+.+..++.+
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l 41 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555566666666666666666666666555553
No 105
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.94 E-value=99 Score=30.32 Aligned_cols=6 Identities=0% Similarity=0.229 Sum_probs=2.4
Q ss_pred eeeeee
Q 044000 390 IQVRHV 395 (420)
Q Consensus 390 iqv~~v 395 (420)
|-||.+
T Consensus 304 M~IRp~ 309 (323)
T 1lwu_C 304 MKLLPM 309 (323)
T ss_dssp EEEEES
T ss_pred EEEeeC
Confidence 334443
No 106
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=35.91 E-value=91 Score=23.10 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
++.+++|+++|......+..--.+-+...+.|+..+.+
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~e 48 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALND 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665566666666777776644
No 107
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=35.87 E-value=1.8e+02 Score=23.67 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=29.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 139 TSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 139 ~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
+..+..|.++++ |..+++++|..++.||....+....+..=+.+++
T Consensus 23 E~RR~AL~eaL~---EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 23 EQRRKALYEALK---ENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556776654 4466788888888888777666555544444444
No 108
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=35.75 E-value=1.8e+02 Score=28.78 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEI 155 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~ 155 (420)
.|++..-+...|+.|.+..+++.+.
T Consensus 131 rK~~~~~~~k~qk~l~~~~~~l~Ka 155 (486)
T 3haj_A 131 TKEAEDGFRKAQKPWAKKLKEVEAA 155 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777666665555443
No 109
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.71 E-value=65 Score=29.00 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVD 195 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~Vd 195 (420)
.+.++.|+.|+....-....+..+|+..+..=+.+|+
T Consensus 95 ~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 95 NKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554444443
No 110
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=35.65 E-value=1.5e+02 Score=25.36 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 147 EAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 147 eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.+-...||.+++++.+.+++.|-...-..-..+..++.+-+..|+.+-
T Consensus 31 SKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~ 78 (104)
T 3s9g_A 31 SKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLR 78 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 345667888888888888876665555555555555555555555543
No 111
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.51 E-value=1.6e+02 Score=22.94 Aligned_cols=33 Identities=9% Similarity=0.187 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++..++..||...-+.|+.+...|..++..|..
T Consensus 34 ~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 34 ERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443
No 112
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=35.08 E-value=1.1e+02 Score=22.88 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=19.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 044000 135 IACFTSLQTQLFEAVAELQEILD-LQDAKQKIAREI 169 (420)
Q Consensus 135 l~lf~s~QtqL~eAV~ELQE~l~-lQ~eIq~Lk~EI 169 (420)
|+-|....-+|..+|.+|++.=+ ++++|++|++=+
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 34455556677788888765432 255555555433
No 113
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=34.95 E-value=1.8e+02 Score=23.41 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=9.7
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 044000 137 CFTSLQTQLFEAVAELQEI 155 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQE~ 155 (420)
+|++...++.....++...
T Consensus 2 lF~~YE~df~~~~~~i~~~ 20 (97)
T 3onj_A 2 LLISYESDFKTTLEQAKAS 20 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544433
No 114
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=34.90 E-value=81 Score=26.76 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAEL 152 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~EL 152 (420)
.+.+|++++|+.+-..|-+..+.+
T Consensus 94 ~~~~eA~~~l~~ri~~l~~~l~~l 117 (151)
T 2zdi_C 94 RSIDEAISFLEKRLKEYDEAIKKT 117 (151)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777766554444444433
No 115
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=34.89 E-value=48 Score=29.40 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
.++++++++++.+..+|..|..+.++|++.|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35777889999999999999999888888774
No 116
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=34.38 E-value=1e+02 Score=22.68 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILD-LQDAKQKIAR 167 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~-lQ~eIq~Lk~ 167 (420)
+..+-+-++.+|+.+..-+.|+...+. +.++|..|+.
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445677778887777777766543 3555555554
No 117
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=34.34 E-value=1.9e+02 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=13.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 165 IAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 165 Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
|..||..+-+.|..+.+++..-...|..
T Consensus 49 l~~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 49 KENEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444444433
No 118
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=34.16 E-value=2e+02 Score=27.07 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=30.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHh
Q 044000 139 TSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAI---LAFANKIKEAERVLDILV 194 (420)
Q Consensus 139 ~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I---~~lakkLKeAE~~Ld~~V 194 (420)
+..+..|.+++.|= .+|+++|..|+.||....+.. +.++.+++.--.+|+.++
T Consensus 104 E~RR~AL~eaLeEN---~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 104 EKRRKALYEALKEN---EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555676665544 666888888887777664443 444444444444444443
No 119
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=34.15 E-value=74 Score=28.97 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHhhh
Q 044000 163 QKIAREIKAKDSAILAFANKIKEA--ERVLDILVDD 196 (420)
Q Consensus 163 q~Lk~EIe~kD~~I~~lakkLKeA--E~~Ld~~VdD 196 (420)
++|+..|.+-|..-.+++.+..+. +..++..|.+
T Consensus 131 ~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~ 166 (192)
T 2p22_C 131 KKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKN 166 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 344555555555555555555543 4555555544
No 120
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=34.12 E-value=2.8e+02 Score=25.47 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
..+..|++||...-.....+.++|++-|+.-|.
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDd 120 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 347777777777777777777777777765554
No 121
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=34.07 E-value=2.2e+02 Score=25.53 Aligned_cols=21 Identities=24% Similarity=0.204 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 044000 174 SAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 174 ~~I~~lakkLKeAE~~Ld~~V 194 (420)
..|+++++++.+.+..|...-
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777776666644
No 122
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=33.48 E-value=2.1e+02 Score=23.82 Aligned_cols=30 Identities=3% Similarity=0.250 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
...++.|++||..++..+..|...|...++
T Consensus 53 ~~~le~lk~eL~~~~~el~~lq~~l~~~~~ 82 (107)
T 2no2_A 53 LEVLESLKQELATSQRELQVLQGSLETSAQ 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888999988888887776666554
No 123
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=33.43 E-value=1.5e+02 Score=22.21 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
-.++.+|..+|...-..|.+-...-..|-+.||++
T Consensus 17 ~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN~ 51 (52)
T 1jcd_A 17 NAKADQASNDANAARSDAQAAKDDAARANQRADNA 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55566666666666666666666666666666653
No 124
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=33.38 E-value=1.6e+02 Score=22.97 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
+++|.+|++.|.+...-..+|+.=.
T Consensus 20 ~~ei~~ie~~i~eL~~iF~dla~lV 44 (83)
T 1sfc_B 20 HSEIIKLENSIRELHDMFMDMAMLV 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554444444444444444333
No 125
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=33.22 E-value=1.4e+02 Score=24.01 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=14.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 133 EIIACFTSLQTQLFEAVAELQEIL 156 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~ELQE~l 156 (420)
.+-+-|+.+|+.|...+.|+...|
T Consensus 11 ~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 11 RMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777766666665553
No 126
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=33.14 E-value=2.4e+02 Score=28.89 Aligned_cols=23 Identities=4% Similarity=-0.130 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 044000 174 SAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 174 ~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
..+.++..+|++.|..+..+-++
T Consensus 123 ~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 123 ARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666655433
No 127
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=33.03 E-value=45 Score=28.20 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIAREI 169 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~EI 169 (420)
..+++-.+|.....+|.++|+.|++.++. ++++++|++++
T Consensus 15 ~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 15 LLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566665555777777777655432 44555555443
No 128
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=32.92 E-value=1.5e+02 Score=29.19 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=36.5
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHH
Q 044000 128 PSTIKEIIACFTSLQTQLFEAVAELQEILDL----------QDAKQKIAREIKAKDSAILAFA 180 (420)
Q Consensus 128 ~~s~keil~lf~s~QtqL~eAV~ELQE~l~l----------Q~eIq~Lk~EIe~kD~~I~~la 180 (420)
..++.+.++++..-+..|-+...-||...++ ...++.|++||+.+-+.|..++
T Consensus 12 ~~N~~~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia 74 (398)
T 1io1_A 12 SRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVS 74 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888777777666 4556667777766666555443
No 129
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=32.72 E-value=56 Score=27.81 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=2.9
Q ss_pred hhhcccC
Q 044000 89 KLFEVSP 95 (420)
Q Consensus 89 ~lfe~s~ 95 (420)
+++.||+
T Consensus 12 ~~~Gvs~ 18 (146)
T 3hh0_A 12 SVGDVTV 18 (146)
T ss_dssp HHHTCCH
T ss_pred HHHCcCH
Confidence 3444443
No 130
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=32.49 E-value=1.2e+02 Score=26.93 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 158 LQDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
++++++.|+++|+.....+..+.+.+...+.
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (278)
T 1r8e_A 84 YTEQERQIREKLDFLSALEQTISLVKKRMKR 114 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666555555555554443
No 131
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=32.31 E-value=72 Score=34.86 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=15.5
Q ss_pred hccCCCchHHHHHHHHHHHhhh
Q 044000 67 LSLLPPLPRAQALLLQMASLAS 88 (420)
Q Consensus 67 l~llppl~raq~ll~~ma~las 88 (420)
+.=||..---+.|+..|+.|..
T Consensus 522 ITElPy~v~~~~~ie~I~~l~~ 543 (767)
T 2xkj_E 522 ITELPYQVSGSKVITQIADQMQ 543 (767)
T ss_dssp EEECCTTCCHHHHHHHHHHHHH
T ss_pred EEeCCCcCcHHHHHHHHHHHHh
Confidence 3446777777788888887753
No 132
>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} SCOP: a.26.1.1
Probab=32.28 E-value=1.2e+02 Score=27.50 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhhhhhhc---ccCCcchhhhhcccCcccccccCCCCCCCCCCC---CCchhHHH----HHHHHHhhHH
Q 044000 74 PRAQALLLQMASLASKLFE---VSPNRSLWISAFRGSLPTFLSSQAQSQPPPPID---SSPSTIKE----IIACFTSLQT 143 (420)
Q Consensus 74 ~raq~ll~~ma~las~lfe---~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~---~~~~s~ke----il~lf~s~Qt 143 (420)
-||-.+=+.|-.||+.+|. -.=-..-| |+...++ --+.+. ++|.. +--.+.++ ++.|+.+-..
T Consensus 23 d~Av~~s~~ih~Ls~~~~~eFe~~~~~~~~---~~~~~~~-ChT~si---~tP~~keeaqq~s~~~LL~~~l~Ll~sW~~ 95 (199)
T 1f6f_A 23 DRATTVANYNSKLAGEMVNRFDEQYGQGIN---SESKVIN-CHTSSI---TTPNSKAEAINTEDKILFKLVISLLHSWDE 95 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC------------CCC-CGGGGS---CCCCSHHHHHHSCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccc---cccCCCC-CccCCc---CCCCCHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3888888888889888873 32222222 5445444 333333 22222 22233444 4446666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 044000 144 QLFEAVAELQEILDLQDAKQKIAREIKAKDSAIL 177 (420)
Q Consensus 144 qL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~ 177 (420)
=|.-.+.++.........|-.-.+||++|-+.++
T Consensus 96 PL~~L~~~~~~~~~~p~~ilska~~I~ek~~~L~ 129 (199)
T 1f6f_A 96 PLHHAVTELANSKGTSPALLTKAQEIKEKAKVLV 129 (199)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccCcchhcchHHHHHHHHHHHH
Confidence 6777777765544444444444455555544433
No 133
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein structure in midwest center for structural genomics, unknown function; HET: MSE; 1.96A {Bacillus subtilis} SCOP: a.281.1.2
Probab=32.27 E-value=53 Score=26.47 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
.+++++++++|.... ..+.+++||+.|..++.+-
T Consensus 67 ~~~~~~l~~~i~~~p-----~v~~y~~Ae~~l~~ll~~I 100 (117)
T 2oee_A 67 VTQAQKTVALVQQHE-----KISQLMEAEQRMSMLIGEL 100 (117)
T ss_dssp --CHHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHH
Confidence 455666666665433 4566778888888887654
No 134
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=32.24 E-value=1.5e+02 Score=31.49 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
+++.+++++|++.-++.+...+.++.-+++++
T Consensus 320 er~~e~a~ael~~a~k~~a~~~er~~~t~~~~ 351 (551)
T 2b5u_A 320 ERNYERARAELNQANEDVARNQERQAKAVQVY 351 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333
No 135
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.21 E-value=1.6e+02 Score=24.08 Aligned_cols=7 Identities=14% Similarity=0.183 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 044000 158 LQDAKQK 164 (420)
Q Consensus 158 lQ~eIq~ 164 (420)
++.++.+
T Consensus 29 i~EELs~ 35 (81)
T 1wt6_A 29 LSREMEA 35 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 136
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.53 E-value=2.8e+02 Score=24.75 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044000 174 SAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 174 ~~I~~lakkLKeAE~~Ld~~ 193 (420)
....++.++|++.+..|+.+
T Consensus 115 ~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 115 ILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666554
No 137
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=31.28 E-value=1.1e+02 Score=28.75 Aligned_cols=38 Identities=3% Similarity=-0.011 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANK----IKEAERVLDIL 193 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakk----LKeAE~~Ld~~ 193 (420)
.+++++|+.|+++++..+..+.+++++ |..+...|...
T Consensus 229 ~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 270 (357)
T 3rrk_A 229 ARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDE 270 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777777888888877777777776 55555444443
No 138
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=31.09 E-value=2.9e+02 Score=29.00 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=68.7
Q ss_pred cccchhhccCCCchHHHHHHH--------HHHHhhhhhhcccCCcchhhhhcccCcccccccCCCCCCCCCCCCCchhHH
Q 044000 61 CTSSTLLSLLPPLPRAQALLL--------QMASLASKLFEVSPNRSLWISAFRGSLPTFLSSQAQSQPPPPIDSSPSTIK 132 (420)
Q Consensus 61 ~~s~~ll~llppl~raq~ll~--------~ma~las~lfe~s~nr~~w~~~~rgslptfl~s~~~~~~~~p~~~~~~s~k 132 (420)
|+..-+=.+-|=-=|-|-+|. -|.-|-.+||+++-+-. ..-+-++
T Consensus 37 CaDeDwGvkCPSGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~---------------------------~s~~y~~ 89 (491)
T 1m1j_A 37 CVDDDWGTKCPSGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYK---------------------------TSNRVIV 89 (491)
T ss_dssp CCTTSTTTEECCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---------------------------HHHHHHH
T ss_pred CccccccCCCCCccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcc---------------------------hHHHHHH
Confidence 566667777777778887765 47778888888864321 1224678
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 133 EIIACFTSLQTQLFEAVAELQEIL-DLQDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~ELQE~l-~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
++..++...|++.-+-...+.+.. +|+++|.-|++-|..+=..|+.|++.|++-...+
T Consensus 90 ~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skI 148 (491)
T 1m1j_A 90 ETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEM 148 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888665555544432 4567777777777776677777777666654433
No 139
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=31.00 E-value=57 Score=27.19 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 162 KQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+-+|--+|...+..+++--.-+|||++.|+++
T Consensus 51 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (89)
T 1wp7_A 51 KVDISSQISSMNQSLQQSKDYIKEAQRLLDTV 82 (89)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44588899999999999999999999999985
No 140
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=30.83 E-value=73 Score=22.83 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH
Q 044000 161 AKQKIAREIKAKDSAILAFANK 182 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakk 182 (420)
+-++|-++|+.||..|..+..+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~e 29 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777788777765543
No 141
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=30.83 E-value=1.8e+02 Score=32.33 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044000 175 AILAFANKIKEAERVLDI 192 (420)
Q Consensus 175 ~I~~lakkLKeAE~~Ld~ 192 (420)
.+.++..++++.+..|+.
T Consensus 921 ~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 921 KKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 142
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=30.45 E-value=1.3e+02 Score=24.46 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 044000 162 KQKIAREIKAKDSAILAFA 180 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~la 180 (420)
+..|+.|+.+||..|+.+.
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~ 38 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLK 38 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 143
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=30.25 E-value=1.9e+02 Score=22.41 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+.++...+......+..|..+.+++...|..|+.+-
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 144
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=30.19 E-value=66 Score=28.91 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=24.0
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 151 ELQEILD--LQDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 151 ELQE~l~--lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
+++.|++ +++.+..+...|..++..|.++.++|++.|
T Consensus 32 ~~~~h~~~~~~~h~~~~~~~i~~~~~~i~~~~~~l~~l~ 70 (228)
T 1flk_A 32 GQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLE 70 (228)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445554 356666666677777777777777776644
No 145
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.04 E-value=3.1e+02 Score=24.67 Aligned_cols=18 Identities=11% Similarity=-0.077 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 044000 159 QDAKQKIAREIKAKDSAI 176 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I 176 (420)
++++..|+-+.......+
T Consensus 102 ~DEl~aLqlq~n~lE~kl 119 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKL 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444333333
No 146
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=29.94 E-value=1.1e+02 Score=30.24 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=19.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 165 IAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 165 Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
|.+++......|.++..++++.+..|..++
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666667777776666655
No 147
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=29.86 E-value=2.5e+02 Score=24.65 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=38.8
Q ss_pred HHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 137 CFTSLQTQLFEAVAELQ-EILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 137 lf~s~QtqL~eAV~ELQ-E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.|....+||-.+|+|+- +.--++.+|.+|++-|......++.++|.=.++=..|..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~L~~ 67 (125)
T 4g2k_A 11 YFQGNMKQIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKSLELLLR 67 (125)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788888888753 334459999999999999999999888876655554443
No 148
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=29.70 E-value=76 Score=22.39 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=17.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 044000 142 QTQLFEAVAEL-QEILDLQDAKQKIAREI 169 (420)
Q Consensus 142 QtqL~eAV~EL-QE~l~lQ~eIq~Lk~EI 169 (420)
..||-++|+|| .+--.+++++.+|+.-+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 56888888876 33444566666665443
No 149
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=29.61 E-value=2.2e+02 Score=22.87 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 153 QEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 153 QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+..++++.+|+.|+.||...--.|..+..+|....+-....-.|
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578899999999999999999999999999988877665433
No 150
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.58 E-value=1.4e+02 Score=37.41 Aligned_cols=34 Identities=6% Similarity=-0.001 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++++++|+++.++.-.....+..++..+++-|++
T Consensus 2041 e~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2041 EKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444445555555444
No 151
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=29.54 E-value=2e+02 Score=22.26 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.++++.|++|.....+.+..-++-=|+-|+++..++
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~ 51 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVL 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555555555555555555554
No 152
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.95 E-value=88 Score=26.85 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
..|++|++||...+..+.--..||++|++.-+.
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~ 67 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEV 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456666777777777777777777777766544
No 153
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.83 E-value=3.4e+02 Score=27.92 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=6.3
Q ss_pred ChHHHHHHHhhhh
Q 044000 230 NLSDILSYAHRIS 242 (420)
Q Consensus 230 ~~eDLIsYAHRIS 242 (420)
+-.||..-.++.|
T Consensus 215 dC~di~~~g~~~S 227 (464)
T 1m1j_B 215 ECEDIYRKGGETS 227 (464)
T ss_dssp SHHHHHHTTCCSC
T ss_pred CHHHHHhcCCCCC
Confidence 4455555444444
No 154
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=28.74 E-value=84 Score=24.24 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHhhhhccccc
Q 044000 162 KQKIAREIKAKDSAILAFANK-------IKEAERVLDILVDDYSDYRR 202 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakk-------LKeAE~~Ld~~VdD~~~yqa 202 (420)
++.|..+||.+-+.+..++++ .=++-+.||.+|-.|.....
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~ 50 (64)
T 2c0s_A 3 VTKLNDRIEAKKKELIYLVEKYGFTHHKVISFSQELDRLLNLLIELKT 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666543 34577889999987764433
No 155
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=28.73 E-value=2.7e+02 Score=23.71 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQK--I-AREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~--L-k~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
...+|+...|.+...+|-+..+-.... ++.-.+ | ..||..|..-|.++-+++++.+..|
T Consensus 67 ~~~~EL~~~l~sie~dLeDLe~sI~iv---E~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 67 WTTNELRNGLRSIEWDLEDLEETIGIV---EANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666654333332221 111111 1 4578888888888888888887665
No 156
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.71 E-value=69 Score=25.26 Aligned_cols=25 Identities=8% Similarity=0.263 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
|++++.|.++|+..+..|..+..+|
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 157
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=28.50 E-value=1.3e+02 Score=24.49 Aligned_cols=53 Identities=9% Similarity=0.230 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQK----IAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~----Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
...+|+...+..++..| . +|.+.|.. -..||..|...+.++-++|+..+..+.
T Consensus 36 ~~~~El~~~l~el~e~l----~------DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETI----V------DLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp TTHHHHHHHHHHHHHHH----H------HHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----H------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555544443 2 22333333 445677777777777777777766553
No 158
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=28.21 E-value=2e+02 Score=25.66 Aligned_cols=26 Identities=8% Similarity=-0.041 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEI 155 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~ 155 (420)
++.+..+.+..-+..|-+...-||..
T Consensus 27 n~~~~~s~l~~ae~aL~~i~~~l~r~ 52 (248)
T 2d4x_A 27 ARTFATQKVSLEESVLSQVTTAIQTA 52 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444444443
No 159
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=27.57 E-value=56 Score=30.65 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHhhhh
Q 044000 154 EILDLQDAKQKIAREIKAKDSAILAFANKIKEAE----RVLDILVDDY 197 (420)
Q Consensus 154 E~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE----~~Ld~~VdD~ 197 (420)
+++.+|+++..|+.+..---.....+..+++..+ ..++.+++.|
T Consensus 227 ~i~~~q~kl~~ie~~~~l~~~~~~~l~~~~~~gd~~~~~A~~~L~~~~ 274 (339)
T 1sig_A 227 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEAN 274 (339)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 3345677777777776543344445555555444 5677777554
No 160
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=27.55 E-value=90 Score=33.90 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=15.9
Q ss_pred hccCCCchHHHHHHHHHHHhhh
Q 044000 67 LSLLPPLPRAQALLLQMASLAS 88 (420)
Q Consensus 67 l~llppl~raq~ll~~ma~las 88 (420)
+.=||..---+.|+..|+.|..
T Consensus 228 ITElPy~v~~~~lie~I~~l~~ 249 (716)
T 1zvu_A 228 ISALPHQVSGARVLEQIAAQMR 249 (716)
T ss_dssp EEECCTTCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHh
Confidence 3446777777888888888753
No 161
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=27.52 E-value=18 Score=31.51 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=22.8
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 044000 325 ITVPSGWKPGMPVELPKDFPLVPPPGWKPGDAV 357 (420)
Q Consensus 325 ~~~p~gWkpG~pv~lP~d~p~~pPpgWKpGDPi 357 (420)
+.+|+||+.|+-+-+.-.--. -.+|+.+||-+
T Consensus 40 V~Ip~G~~~G~~ir~~g~G~~-~~~gg~~GDl~ 71 (170)
T 1c3g_A 40 IQLKPGWKAGTKITYKNQGDY-NPQTGRRKTLQ 71 (170)
T ss_dssp EECCTTCCTTCEEEESSCSSB-CSSSSCBCEEE
T ss_pred EEeCCCccCCCEEEEeccccC-CCCCCccccEE
Confidence 678999999998777753222 24678888854
No 162
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=27.38 E-value=3.7e+02 Score=25.58 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=26.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREI 169 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EI 169 (420)
-.|+..|++.+.+|-+....-.+..++=++|.+.-+.+
T Consensus 33 ~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~ 70 (290)
T 3qb5_K 33 SPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRT 70 (290)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899988888777766666666666666554444
No 163
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=27.36 E-value=97 Score=28.21 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAE 151 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~E 151 (420)
++.|+..|+++.|..|-.-|.+
T Consensus 39 S~~eL~~LL~~~~dlL~~~v~~ 60 (192)
T 2p22_C 39 SSKEIIDLIQTHRHQLELYVTK 60 (192)
T ss_dssp TTHHHHHHHHHCHHHHHHHGGG
T ss_pred CHHHHHHHHhChHHHHHHHHHh
Confidence 3556666666664444444433
No 164
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.29 E-value=1.8e+02 Score=22.34 Aligned_cols=25 Identities=4% Similarity=0.122 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
+++++.|+.|++.....+..+..+|
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 165
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=27.23 E-value=36 Score=30.21 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044000 148 AVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDY 200 (420)
Q Consensus 148 AV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~y 200 (420)
-..+++|...|+.+|+++.+.....|..+..+...=.+.+. ++++|+.+
T Consensus 54 F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~----i~~EY~r~ 102 (140)
T 1xaw_A 54 FDTGLQEYKSLQSVLDEINKELSRLDKELDDYREESEEYMA----AADEYNRL 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHH----HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH----HHHHHHHH
Confidence 34677888888888888888888888777765433333332 34555544
No 166
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=27.15 E-value=17 Score=32.21 Aligned_cols=9 Identities=0% Similarity=0.040 Sum_probs=5.5
Q ss_pred hhhhhcccC
Q 044000 99 LWISAFRGS 107 (420)
Q Consensus 99 ~w~~~~rgs 107 (420)
.=++.|||.
T Consensus 23 v~l~d~~Gk 31 (220)
T 1xcc_A 23 FELYKYIEN 31 (220)
T ss_dssp EEHHHHTTT
T ss_pred EeHHHHcCC
Confidence 345667775
No 167
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=27.12 E-value=48 Score=26.57 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
.+++++++++|.... ..+.+++||+.|..++.+-
T Consensus 67 ~~~~~~l~~~i~~~p-----~v~~y~~Ae~~l~~ll~~I 100 (113)
T 2iaz_A 67 QAKMEGFGKQIQGNS-----LLSEFFTKQQQLAIYLSDI 100 (113)
T ss_dssp HHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHH
Confidence 455666666665433 4566778888888887654
No 168
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=26.99 E-value=1e+02 Score=25.07 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.|+.|+.||...+..+.--..||++|++..+.
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~ 37 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVEL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778888888888888888888888876554
No 169
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=26.84 E-value=1.5e+02 Score=22.64 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHhhhhcc
Q 044000 162 KQKIAREIKAKDSAILAFANK-------IKEAERVLDILVDDYSD 199 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakk-------LKeAE~~Ld~~VdD~~~ 199 (420)
++.|..+||.+-+.+..++++ .=++-+.||.+|-.|..
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k 47 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666654 34677899999977653
No 170
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.80 E-value=1.3e+02 Score=20.86 Aligned_cols=20 Identities=0% Similarity=0.361 Sum_probs=8.3
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 044000 165 IAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 165 Lk~EIe~kD~~I~~lakkLK 184 (420)
|+.|+++....++.++++|.
T Consensus 4 lee~~r~l~~ivq~lq~r~d 23 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLD 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 171
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.61 E-value=1.9e+02 Score=26.17 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 163 QKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 163 q~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.+-+.++..-...|..+...|..-.+.|...+
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i 79 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQI 79 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333433333344444444444444444433
No 172
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=26.57 E-value=2.8e+02 Score=25.80 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREI 169 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EI 169 (420)
-+.-.+.+.|++.+.+|-+....-.+.+++=++|.+.-+.+
T Consensus 15 ~~~~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~ 55 (249)
T 3axj_A 15 MSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEA 55 (249)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667888888887777666666666656555554444
No 173
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=26.56 E-value=2.1e+02 Score=21.75 Aligned_cols=22 Identities=5% Similarity=0.173 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 044000 163 QKIAREIKAKDSAILAFANKIK 184 (420)
Q Consensus 163 q~Lk~EIe~kD~~I~~lakkLK 184 (420)
+.|++.++..+..|.++...++
T Consensus 42 ~~L~~~~~~l~~~i~~L~~~~~ 63 (99)
T 1q08_A 42 GIVQERLQEVEARIAELQSMQR 63 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333
No 174
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=26.47 E-value=1.6e+02 Score=26.52 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=31.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHhhHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEI---LD-LQDAKQKIAREIKAKDSAI 176 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~---l~-lQ~eIq~Lk~EIe~kD~~I 176 (420)
.++...|...|..||..-.++--- .. -+..++.|+++|...++.+
T Consensus 49 ~~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~l 97 (177)
T 1nog_A 49 DDIRNDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKEMKAEI 97 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHhhC
Confidence 357777888999999888877531 11 1466777777777766654
No 175
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.36 E-value=2.4e+02 Score=29.01 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=13.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 169 IKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 169 Ie~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
+......|..+..++++.+..|..++
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555544
No 176
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=26.11 E-value=1e+02 Score=26.80 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
.++++++++.+.|..++..|..+..++.+.|
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666666677777776666666666655
No 177
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.05 E-value=2.6e+02 Score=22.49 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 044000 140 SLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYR 201 (420)
Q Consensus 140 s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yq 201 (420)
..|.-=.++..-....-.++.++...+.+....+..|..+.++++-.+..|+.+-+.+...+
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 178
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.84 E-value=3.3e+02 Score=23.74 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
|.+++.|+.||......+++.-.++.+-.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55577777777777776666554444433
No 179
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.61 E-value=1.2e+02 Score=25.16 Aligned_cols=40 Identities=10% Similarity=0.318 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
.+++..|+..|+.....+..+.+.|+.-...+..--..+.
T Consensus 15 ~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~Cp~gw~ 54 (182)
T 3kqg_A 15 LEKASALNTKIRALQGSLENMSKLLKRQNDILQVVSQGWK 54 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCE
Confidence 4455556666666666666666666664444444333333
No 180
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=25.57 E-value=67 Score=26.72 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhhHH
Q 044000 159 QDAKQKIAREIKAKDSA 175 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~ 175 (420)
+.+|.+|++|++.||..
T Consensus 74 EeEI~rLr~eLe~r~~q 90 (92)
T 3vp9_A 74 EEEIKHLKLGLEQRDHQ 90 (92)
T ss_dssp HHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 66777777777777654
No 181
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.52 E-value=3.8e+02 Score=24.58 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
+.+.++|++++......+..|.+.=++-|
T Consensus 145 ~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 145 QKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333
No 182
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=25.41 E-value=2e+02 Score=26.52 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=34.0
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHH
Q 044000 125 DSSPSTIKEIIACFTSLQTQLFEAVAEL-QEILDLQDAKQKIAREIKAKDSAI 176 (420)
Q Consensus 125 ~~~~~s~keil~lf~s~QtqL~eAV~EL-QE~l~lQ~eIq~Lk~EIe~kD~~I 176 (420)
+.....+++.|..|...|.++-+...++ .|.++++++-.++.+-+-.|-..|
T Consensus 22 ~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eI 74 (225)
T 2e50_A 22 ETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSEL 74 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 3455567777888888888877766665 455666777777666554444333
No 183
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=25.39 E-value=2e+02 Score=21.67 Aligned_cols=50 Identities=10% Similarity=0.194 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAV---AELQEILDLQDAKQKIAREIKAKDSAILAF 179 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV---~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~l 179 (420)
.+.+++.-|+.++..|...- ..+.....+.++.+.+++||..+...|..+
T Consensus 10 ~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~ 62 (119)
T 3uun_A 10 ALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNI 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45667777776666654321 122333333444455555555555444433
No 184
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.31 E-value=1.4e+02 Score=29.49 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
++++..|+++|+.....+.++..+|.+.|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 16 KEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 185
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=25.23 E-value=2.6e+02 Score=27.63 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILD 157 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~ 157 (420)
++.+.++++..-+..|-+...-||...+
T Consensus 47 N~~da~S~LqtAE~AL~~i~diLqrmRE 74 (326)
T 3k8w_A 47 NANDGISLAQTAEGALGEISNNLQRIRE 74 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444433
No 186
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.11 E-value=2.5e+02 Score=22.13 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044000 160 DAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDY 197 (420)
Q Consensus 160 ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~ 197 (420)
..+..++.+++.....|..+..++.+.+..+..+-..|
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666677777777776666666654443
No 187
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.01 E-value=3.5e+02 Score=25.42 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 145 LFEAVAELQEIL-DLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 145 L~eAV~ELQE~l-~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
|....+.+++.+ .+++++++++.|..+.-..+.++-.+|.++..--+.
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444333 347777777777777766666666666666555544
No 188
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.82 E-value=1.1e+02 Score=26.55 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 162 KQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
|+.|++||...+..+.--..||++|++..+.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~ 54 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEK 54 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6677778877777777777888888776554
No 189
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.80 E-value=2.2e+02 Score=21.35 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 157 DLQDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 157 ~lQ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
.++++.+.|+.+..+....|..+.+++
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 190
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=24.58 E-value=3e+02 Score=22.97 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 044000 148 AVAELQEILDLQDAKQKIAREIKAK 172 (420)
Q Consensus 148 AV~ELQE~l~lQ~eIq~Lk~EIe~k 172 (420)
.++.-+|.-+++.+++.|++.++..
T Consensus 13 ~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 13 CLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444433
No 191
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=24.58 E-value=1.3e+02 Score=22.97 Aligned_cols=49 Identities=12% Similarity=0.286 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEA---VAELQEILDLQDAKQKIAREIKAKDSAILA 178 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eA---V~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~ 178 (420)
++.+++.-|+.+...|... -..+.....+.++.+.+++||..+...|..
T Consensus 10 ~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~ 61 (118)
T 3uul_A 10 ALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGS 61 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777766665431 111222233344444455555555444433
No 192
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=24.26 E-value=2e+02 Score=27.60 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=36.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHh
Q 044000 133 EIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKA----KDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 133 eil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~----kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
.|+++|.+.+.+|-+....-.+..++=++|.+.-+.+-. -+.......+.|++|+..|..+.
T Consensus 29 ~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~ 94 (298)
T 3axj_B 29 PIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLI 94 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 567889998888877776666666666666665554431 11000224455666666665554
No 193
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.25 E-value=2.2e+02 Score=22.37 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDL-QDAKQKIARE 168 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~l-Q~eIq~Lk~E 168 (420)
+|++|..=+.+=.||.++..-+.+.+.+ |++|++|+.|
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 3444444444444555554444333222 4444444443
No 194
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.23 E-value=3e+02 Score=22.58 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=5.5
Q ss_pred HHHHHHHhhHHHHHH
Q 044000 165 IAREIKAKDSAILAF 179 (420)
Q Consensus 165 Lk~EIe~kD~~I~~l 179 (420)
|++.++.||..|..+
T Consensus 59 Lq~qLe~kd~ei~rL 73 (81)
T 3qh9_A 59 LQEQVALKDAEIERL 73 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHH
Confidence 333333333333333
No 195
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=23.74 E-value=21 Score=31.64 Aligned_cols=15 Identities=47% Similarity=0.959 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCCCC
Q 044000 347 PPPGWKPGDAVPLPP 361 (420)
Q Consensus 347 pPpgWKpGDPi~lpp 361 (420)
-|-+||+||++-+||
T Consensus 177 ~p~~W~~g~~~~~~p 191 (224)
T 1prx_A 177 TPVDWKDGDSVMVLP 191 (224)
T ss_dssp BCTTCCTTSCEEECT
T ss_pred CCCCCCCCCceEeCC
Confidence 344566666665544
No 196
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.63 E-value=1.3e+02 Score=22.34 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERV 189 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~ 189 (420)
++++|++|..+.-..+..+.+++.+-..-
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554444433
No 197
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.39 E-value=3.2e+02 Score=28.09 Aligned_cols=21 Identities=5% Similarity=0.151 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 044000 176 ILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 176 I~~lakkLKeAE~~Ld~~VdD 196 (420)
...+..++++.+..+..+-++
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~ 133 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEE 133 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666655433
No 198
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.17 E-value=5.1e+02 Score=26.32 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
..++.+++.-|..++..|+.|+..|......|..+.
T Consensus 90 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~ 125 (411)
T 3ghg_C 90 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLK 125 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666665555555544443
No 199
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.09 E-value=3e+02 Score=22.28 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+.++...+.+...++..|..+.+++.-.|..|+.
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433333
No 200
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.97 E-value=1.1e+02 Score=20.37 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044000 149 VAELQEILDLQDAKQKIAREI 169 (420)
Q Consensus 149 V~ELQE~l~lQ~eIq~Lk~EI 169 (420)
++.++|.-++|..+.+|++.+
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444454454444433
No 201
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=22.78 E-value=1.2e+02 Score=25.54 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 161 AKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 161 eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
.|+.|+.||......+.--..||++|+...+.
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~ 37 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVEL 37 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35667777777777777777777777765543
No 202
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=22.77 E-value=1.7e+02 Score=24.31 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=4.1
Q ss_pred hhhhcccC
Q 044000 88 SKLFEVSP 95 (420)
Q Consensus 88 s~lfe~s~ 95 (420)
++++.||+
T Consensus 7 A~~~gvs~ 14 (135)
T 1q06_A 7 AKITGLTS 14 (135)
T ss_dssp HHHHTCCH
T ss_pred HHHHCcCH
Confidence 34555554
No 203
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=22.75 E-value=1.9e+02 Score=31.62 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=40.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
+++++-+..+=..|.+++.+|.+..+.-..+....++....-..|.-...+|+..=..|+.+|++
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~v~~~m~~~R~~~D~lE~~v~~ 714 (729)
T 3o6x_A 650 KELIKEISHRVSAIKVLVRDMTEARKVANHKENFKEKAFAYEETVRPYLESIRDHIDHLEMEIDD 714 (729)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34555555555666666666666655444444444444444556667778888888888888854
No 204
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=22.71 E-value=1.5e+02 Score=23.18 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 044000 149 VAELQEILDLQDAKQKIAREIKAK 172 (420)
Q Consensus 149 V~ELQE~l~lQ~eIq~Lk~EIe~k 172 (420)
+..|-|.+++=-+||+|+.|+...
T Consensus 30 ~rTLLEi~KL~LEIQKL~~EL~gl 53 (65)
T 2yf2_A 30 VKTLLEIRKLFLEIQKLKVELQGL 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcch
Confidence 334444444444555555554443
No 205
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=22.68 E-value=98 Score=26.90 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 144 QLFEAVAELQEILDL--QDAKQKIAREIKAKDSAILAFANKIKEAE 187 (420)
Q Consensus 144 qL~eAV~ELQE~l~l--Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE 187 (420)
++.+++++.+++=|+ ..+-.+-+++....+..|+.|.++|+.|+
T Consensus 28 ~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 28 EVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp HHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 455555555555444 12222335555666666666666666655
No 206
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=22.64 E-value=23 Score=32.00 Aligned_cols=15 Identities=40% Similarity=1.050 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCC
Q 044000 347 PPPGWKPGDAVPLPP 361 (420)
Q Consensus 347 pPpgWKpGDPi~lpp 361 (420)
-|-+||+||++-+||
T Consensus 173 ~p~~W~~g~~~~~~p 187 (233)
T 2v2g_A 173 TPADWQPGDRCMVVP 187 (233)
T ss_dssp BCTTCCTTSCEEECT
T ss_pred CCCCcCcCCceEeCC
Confidence 345666677765544
No 207
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=22.53 E-value=36 Score=31.15 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=9.5
Q ss_pred hhhhhcccCccccccc
Q 044000 99 LWISAFRGSLPTFLSS 114 (420)
Q Consensus 99 ~w~~~~rgslptfl~s 114 (420)
.=++.|||. +..|..
T Consensus 45 vsLsd~~GK-~vVL~F 59 (216)
T 3sbc_A 45 VSLDKYKGK-YVVLAF 59 (216)
T ss_dssp ECGGGGTTS-EEEEEE
T ss_pred EehHHhCCC-eEEEEE
Confidence 346889996 455543
No 208
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.49 E-value=4.2e+02 Score=23.66 Aligned_cols=55 Identities=15% Similarity=0.388 Sum_probs=37.5
Q ss_pred HHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 138 FTSLQTQLFEAVAEL-----QEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 138 f~s~QtqL~eAV~EL-----QE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
|+.+=+.||+-..+. .++-.++.+...|++.+..++..|..++.+|.+-++++..
T Consensus 88 lEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 88 VEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455533332 3344447788889999999999999999999887766554
No 209
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=22.47 E-value=2.2e+02 Score=23.78 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=25.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 044000 138 FTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAIL 177 (420)
Q Consensus 138 f~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~ 177 (420)
++.+..+|..|-+.|.. .|..|..|+.+|..++..+.
T Consensus 4 ~~~L~~~L~~aEeaL~~---kq~~id~lke~~~q~~~~~E 40 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVA---KQELIDKLKEEAEQHKIVME 40 (94)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666633 58889999998888885443
No 210
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=22.47 E-value=1.9e+02 Score=32.05 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 162 KQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 162 Iq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
+.+++++++.....+.++..+|.+.+..+
T Consensus 915 l~~l~~~~~~Le~~l~ele~elee~ee~l 943 (1184)
T 1i84_S 915 RVRLAAKKQELEEILHEMEARIEEEEERS 943 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 211
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=22.46 E-value=1.4e+02 Score=30.95 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
.-++.+|++|.++..+.|..+.+-|..-+...+.++++
T Consensus 415 ~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~e 452 (470)
T 3ilw_A 415 ALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDE 452 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44566677777777777777766666655544444443
No 212
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=22.28 E-value=3.1e+02 Score=22.18 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 044000 180 ANKIKEAERVLDI 192 (420)
Q Consensus 180 akkLKeAE~~Ld~ 192 (420)
..+|-+.+..++.
T Consensus 66 ~~ql~e~~dE~~S 78 (96)
T 3q8t_A 66 KRQQLELDDELKS 78 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 213
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=22.17 E-value=3.4e+02 Score=22.59 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=30.8
Q ss_pred CCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044000 122 PPIDSSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAK 172 (420)
Q Consensus 122 ~p~~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~k 172 (420)
|-..+...+..++...-...-+++..+|+++|.----+-+|..|..||.++
T Consensus 14 P~~~~~v~~l~~AekWR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL 64 (92)
T 1x4t_A 14 PFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKL 64 (92)
T ss_dssp CSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred CCChhhcCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 444566777888877777777777777777764322244444444444433
No 214
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=22.16 E-value=97 Score=25.95 Aligned_cols=13 Identities=0% Similarity=0.332 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKA 171 (420)
Q Consensus 159 Q~eIq~Lk~EIe~ 171 (420)
++.|+.|++||.+
T Consensus 84 ~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 84 DKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcC
Confidence 4444444444433
No 215
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.89 E-value=2e+02 Score=21.09 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=22.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 044000 166 AREIKAKDSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 166 k~EIe~kD~~I~~lakkLKeAE~~Ld~~V 194 (420)
-+|+++|+..+..+-..||=|...|+--+
T Consensus 12 iqeleernaelknlkehlkfakaelefel 40 (46)
T 3he4_B 12 IQELEERNAELKNLKEHLKFAKAELEFEL 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888777544
No 216
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=21.74 E-value=1.8e+02 Score=26.55 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEI 155 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~ 155 (420)
++.+..+.|..-+..|-+...-||..
T Consensus 29 N~~~a~s~l~~ae~aL~~i~~~l~r~ 54 (239)
T 3pwx_A 29 NIANLKTTLSSQETHLDSVSESLKSM 54 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444433
No 217
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=21.55 E-value=1.1e+02 Score=26.35 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCC
Q 044000 134 IIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYSDYRRPKRVKSEGGDG 213 (420)
Q Consensus 134 il~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~~yqa~KRlKs~~~~~ 213 (420)
++++|....+.|-....--.....+...+....-+++.--..|..+...|.---..|+.+-+.-..+++-+|
T Consensus 68 ~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~R-------- 139 (175)
T 4abx_A 68 AAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKN-------- 139 (175)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH--------
Q ss_pred CCCCCCCcccccccCCChHHHHHHHhhh
Q 044000 214 NDDDSGSCSTTVESRLNLSDILSYAHRI 241 (420)
Q Consensus 214 ~~e~~~~~~~A~~~~V~~eDLIsYAHRI 241 (420)
+.+ +++++|+.|..++
T Consensus 140 -----------Kyg-~~~eell~~~~~~ 155 (175)
T 4abx_A 140 -----------KYG-PTLEDVVEFGAQA 155 (175)
T ss_dssp -----------HHC-SSHHHHHHHHHHH
T ss_pred -----------HcC-CCHHHHHHHHHHH
No 218
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=21.49 E-value=1.5e+02 Score=31.07 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAER 188 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~ 188 (420)
.-++++|++|++++.+.|..+.+-|..-+.
T Consensus 453 ~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~ 482 (514)
T 2inr_A 453 NTDIVALEGEHKELEALIKQLRHILDNHDA 482 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 346667777777777777777776665433
No 219
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.47 E-value=1.1e+02 Score=22.22 Aligned_cols=25 Identities=8% Similarity=0.319 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHH
Q 044000 142 QTQLFEAVAELQEILD-LQDAKQKIA 166 (420)
Q Consensus 142 QtqL~eAV~ELQE~l~-lQ~eIq~Lk 166 (420)
|.-+++-|.++++.++ ++++|..|+
T Consensus 4 Qn~mydlvsel~~r~e~LE~Ri~~LE 29 (43)
T 2pnv_A 4 MNIMYDMISDLNERSEDFEKRIVTLE 29 (43)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4556677777766532 233444433
No 220
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=21.47 E-value=3.1e+02 Score=27.46 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=26.3
Q ss_pred CCchhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 044000 126 SSPSTIKEIIACFTSLQTQLFEAVAEL-QEILDLQDAKQKIAREIK 170 (420)
Q Consensus 126 ~~~~s~keil~lf~s~QtqL~eAV~EL-QE~l~lQ~eIq~Lk~EIe 170 (420)
.-+..+++.|..|..+|.++.+.-.++ .|+++++++-+++.+-+=
T Consensus 46 sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLy 91 (359)
T 3fs3_A 46 DLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIY 91 (359)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344556666666666666666665555 344555666655555553
No 221
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=21.44 E-value=1.1e+02 Score=24.87 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHh
Q 044000 129 STIKEIIACFTSLQTQLFEAVAELQE-----------ILDLQDAKQKIAREIKAK-DSAILAFANKIKEAERVLDILV 194 (420)
Q Consensus 129 ~s~keil~lf~s~QtqL~eAV~ELQE-----------~l~lQ~eIq~Lk~EIe~k-D~~I~~lakkLKeAE~~Ld~~V 194 (420)
++.++.+..-+.++.-++..-+.|.+ ..++++.|..|+.-++.- +.....|..++++.++++..+.
T Consensus 11 ~~~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~ 88 (120)
T 2p32_A 11 SSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPII 88 (120)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 44455566555555555554444432 223345555555444321 0133455556666555555544
No 222
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A*
Probab=21.37 E-value=1.6e+02 Score=27.50 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=39.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEI-----LDL-QDAKQKIAREIKAKDSAI-----------LAFANKIKEAERVLDI 192 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~-----l~l-Q~eIq~Lk~EIe~kD~~I-----------~~lakkLKeAE~~Ld~ 192 (420)
.++...|...|..||..-.+|--- ..+ +..++.|+++|...+..+ ...+..|+-|..+-.+
T Consensus 73 ~~~~~~L~~IQ~~Lf~lga~LAtp~~~~~~~i~~~~v~~LE~~ID~~~~~lppl~~FILPGGs~~aA~LHvARTV~RR 150 (213)
T 3ke4_A 73 IDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRR 150 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSSSSCCCCCHHHHHHHHHHHHHHHHHSCCCCSCBCSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHhcCCCCccCCCCCHHHHHHHHHHHHHHHhcCCCCCceEeCCCCHHHHHHHHHHHHHHH
Confidence 456778899999999998888520 112 567788888888777654 2334555555544444
No 223
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=21.29 E-value=28 Score=30.55 Aligned_cols=32 Identities=31% Similarity=0.653 Sum_probs=22.3
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 044000 325 ITVPSGWKPGMPVELPKDFPLVPPPGWKPGDAV 357 (420)
Q Consensus 325 ~~~p~gWkpG~pv~lP~d~p~~pPpgWKpGDPi 357 (420)
+.+|+||+.|+-+-+.-.--. -.+|+.+||-+
T Consensus 46 V~Ip~G~~~G~~ir~~g~G~~-g~~gg~~GDl~ 77 (180)
T 2q2g_A 46 VEIKPGWKDGTKLTYSGEGDQ-ESPGTSPGDLV 77 (180)
T ss_dssp EEECTTCCTTCEEEETTCSCC-SSTTSCCCEEE
T ss_pred EEECCCCcCCcEEEEeeccCC-CCCCCccccEE
Confidence 667999999998777653211 13588888864
No 224
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=21.27 E-value=2 Score=38.76 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=3.0
Q ss_pred Hhhhhccc
Q 044000 193 LVDDYSDY 200 (420)
Q Consensus 193 ~VdD~~~y 200 (420)
+..||.+|
T Consensus 45 ~~Ae~eN~ 52 (177)
T 3a6m_A 45 LLADFDNY 52 (177)
T ss_dssp TTTTTTTH
T ss_pred HHHHHHHH
Confidence 33333333
No 225
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=21.19 E-value=3.3e+02 Score=23.75 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=24.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEI-LDLQDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~-l~lQ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
++++++..-....|..++.-|.+. .++-+++...+.+|......|..++.+|
T Consensus 14 ~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~l 66 (235)
T 1sum_B 14 KGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEV 66 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444321 1223444444444555555555544444
No 226
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=21.13 E-value=4.2e+02 Score=23.24 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQLFEAVAELQEILDL-----QDAKQKIAREIKAKDSAILAFANKIKE 185 (420)
Q Consensus 130 s~keil~lf~s~QtqL~eAV~ELQE~l~l-----Q~eIq~Lk~EIe~kD~~I~~lakkLKe 185 (420)
.+..+++-+-.+++++.+...++...... +.++..|+..|+.....|.+||..-++
T Consensus 17 ~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~ 77 (171)
T 2p2u_A 17 QAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLNKT 77 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
No 227
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=21.07 E-value=2e+02 Score=21.38 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 158 LQDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 158 lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
++++|.+|++.|.+...-..+|+.=..+=...|++
T Consensus 7 R~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~ 41 (65)
T 1gl2_B 7 RESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDS 41 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444444444444444433
No 228
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.95 E-value=3.9e+02 Score=22.71 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 044000 131 IKEIIACFTSLQTQLFEAVAELQEILDLQDA-----KQKIAREIKAKDSAILAFANKIKEAERVLDIL 193 (420)
Q Consensus 131 ~keil~lf~s~QtqL~eAV~ELQE~l~lQ~e-----Iq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~ 193 (420)
+..-.+-|..+-.+|.--+.+++.-.+-.+. +..|++||...-..-..+.++|++-|+.-|.+
T Consensus 1 ~Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 1 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
No 229
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=20.94 E-value=2e+02 Score=22.42 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044000 143 TQLFEAVAELQEILDLQDAKQKIAREIKA 171 (420)
Q Consensus 143 tqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~ 171 (420)
+.|+|.-+.+-|+|+++.+.+.|.+|..+
T Consensus 31 rTLLEi~KL~LEIQKL~~EL~glskefle 59 (65)
T 2yf2_A 31 KTLLEIRKLFLEIQKLKVELQGLSKEFLE 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhHHHHH
Confidence 34777788888888888888888888654
No 230
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=20.91 E-value=5.5e+02 Score=24.50 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=43.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044000 138 FTSLQTQLFEAVAELQEILDL-----------QDAKQKIAREIKAKDSAILAFANKIKEAERVLDILVDDYS 198 (420)
Q Consensus 138 f~s~QtqL~eAV~ELQE~l~l-----------Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~~VdD~~ 198 (420)
|..+..++..+-.++..|-.+ +-++-..+.+|...+-.|..+..++..+|.-+..+..||-
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyV 150 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYV 150 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBC
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhh
Confidence 555666666666666655332 5556667778888888888888888888888888887764
No 231
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.87 E-value=4.4e+02 Score=23.38 Aligned_cols=24 Identities=4% Similarity=0.307 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANK 182 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakk 182 (420)
.+.++.+.++|..-...+..+..-
T Consensus 53 ~~ql~~v~kdi~~a~~eL~~m~~~ 76 (141)
T 3okq_A 53 KKKLETVSKDLENAQADVLKLQEF 76 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 232
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=20.80 E-value=2.8e+02 Score=22.99 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 044000 153 QEILDLQDAKQKIAREIKAK-----DSAILAFANKIKEAERVLDILVDDYSDY 200 (420)
Q Consensus 153 QE~l~lQ~eIq~Lk~EIe~k-----D~~I~~lakkLKeAE~~Ld~~VdD~~~y 200 (420)
++++|+|--|+.|..|++.- -..|-+-..+|+.|...|..+...++-|
T Consensus 29 q~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~ 81 (90)
T 4b6x_A 29 QEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVL 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566555555432 2457778888999999998887665544
No 233
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=20.79 E-value=4.7e+02 Score=23.65 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=43.1
Q ss_pred ccCcccccccC----CCCCCCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 044000 105 RGSLPTFLSSQ----AQSQPPPPIDSSPSTIKEIIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREIKAKDSAILAFA 180 (420)
Q Consensus 105 rgslptfl~s~----~~~~~~~p~~~~~~s~keil~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EIe~kD~~I~~la 180 (420)
=..+|.|=... .....+-.+..+...+.++...|... +..+-+.-.+|..+..|..||+.=.+.++.|.
T Consensus 106 GV~vP~~~~~~~~~~~~~~~~ygl~~t~~~ld~a~~~~~~~-------l~~lvelA~le~~~~~L~~eIkkT~RRVNALE 178 (217)
T 3aon_A 106 SVKVPLMNFQYDETLNETPLEYGYLHSNAELDRSIDGFTQL-------LPKLLKLAEVEKTCQLMAEEIEKTRRRVNALE 178 (217)
T ss_dssp TEEEEEEEEECCGGGTTSCCCCCCTTCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeceEEEEecccccCCcCCcCcccCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 34578885442 21122344455666777777666543 33333334446666666666666666655554
Q ss_pred --------HHHHHHHHHHHH
Q 044000 181 --------NKIKEAERVLDI 192 (420)
Q Consensus 181 --------kkLKeAE~~Ld~ 192 (420)
+.++-....|+.
T Consensus 179 ~viIP~~e~tikyI~~~LdE 198 (217)
T 3aon_A 179 YMTIPQLEETIYYIKMKLEE 198 (217)
T ss_dssp HTHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHhH
Confidence 444455555544
No 234
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.71 E-value=1.9e+02 Score=20.44 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=14.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Q 044000 142 QTQLFEAVAEL-QEILDLQDAKQKIA 166 (420)
Q Consensus 142 QtqL~eAV~EL-QE~l~lQ~eIq~Lk 166 (420)
..||-++|++| ++-.++++++.+|+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 56888888876 33334444444444
No 235
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.69 E-value=3e+02 Score=27.22 Aligned_cols=34 Identities=6% Similarity=0.055 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLDI 192 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld~ 192 (420)
+++|++++.++++.++.+..-...-|..+..|..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 23 KEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444444444433333
No 236
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=20.69 E-value=3e+02 Score=23.40 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=22.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEI-LDLQDAKQKIAREIKAKDSAILAFANKI 183 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~-l~lQ~eIq~Lk~EIe~kD~~I~~lakkL 183 (420)
++++++..-....|..++.-|.+. .++-+++...+.+|......|..++.+|
T Consensus 14 ~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~I~~~~~~l 66 (216)
T 2i0m_A 14 QSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARL 66 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544444321 1223334444444444444444444443
No 237
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.67 E-value=3.3e+02 Score=27.07 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAFANKIKEAERVLD 191 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~Ld 191 (420)
++++++++.|++...+.+.+....-|..+..|.
T Consensus 23 ~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 23 LRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666555554444444443333
No 238
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=20.58 E-value=3.4e+02 Score=21.92 Aligned_cols=9 Identities=11% Similarity=0.449 Sum_probs=5.5
Q ss_pred CChHHHHHH
Q 044000 229 LNLSDILSY 237 (420)
Q Consensus 229 V~~eDLIsY 237 (420)
|+++||+.+
T Consensus 73 I~~eeL~~~ 81 (86)
T 3nr7_A 73 IDPNELLNS 81 (86)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHhh
Confidence 456676654
No 239
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=20.39 E-value=1.6e+02 Score=26.47 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=31.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHhhHHH
Q 044000 132 KEIIACFTSLQTQLFEAVAELQEI---LD-LQDAKQKIAREIKAKDSAI 176 (420)
Q Consensus 132 keil~lf~s~QtqL~eAV~ELQE~---l~-lQ~eIq~Lk~EIe~kD~~I 176 (420)
.++...|...|..||..-.++--- .. -+..++.|+++|...++.+
T Consensus 48 ~~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~l 96 (177)
T 1woz_A 48 EDMKKDLERVQVELFEIGEDLSTQSSKKKIDEKYVKWLEERTVEYRKES 96 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCCHHHHHHHHHHHHHHHhhC
Confidence 367778889999999988877531 11 1466777777777766655
No 240
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=20.35 E-value=5.1e+02 Score=23.88 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=21.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044000 134 IIACFTSLQTQLFEAVAELQEILDLQDAKQKIAREI 169 (420)
Q Consensus 134 il~lf~s~QtqL~eAV~ELQE~l~lQ~eIq~Lk~EI 169 (420)
+.+.|++.+.+|-+....-.+..++=++|.+.-+.+
T Consensus 15 ~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~ 50 (240)
T 1j1j_A 15 VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREI 50 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777776666655555555555555554444
No 241
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=20.35 E-value=5.9e+02 Score=25.60 Aligned_cols=42 Identities=5% Similarity=0.115 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044000 130 TIKEIIACFTSLQTQ---------LFEAVAELQEILDLQDAKQKIAREIKA 171 (420)
Q Consensus 130 s~keil~lf~s~Qtq---------L~eAV~ELQE~l~lQ~eIq~Lk~EIe~ 171 (420)
.+.++++-+..++.+ |......+++|..++++|++....|+.
T Consensus 10 ~v~dl~~Wl~E~~~~L~S~d~GkDL~sVe~LLqKH~~lE~eI~a~~~~v~~ 60 (450)
T 3r6n_A 10 VTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDK 60 (450)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665 566667777777777777666655543
No 242
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=20.33 E-value=3.6e+02 Score=23.81 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhHHHHHHH-----------------HHHHHHHHH
Q 044000 136 ACFTSLQTQLFEAVAELQEILDL---------QDAKQKIAREIKAKDSAILAFA-----------------NKIKEAERV 189 (420)
Q Consensus 136 ~lf~s~QtqL~eAV~ELQE~l~l---------Q~eIq~Lk~EIe~kD~~I~~la-----------------kkLKeAE~~ 189 (420)
+.+.+.-..+-+++.++++.+.- ...+..+++.|.+|+...++|- .+|..||..
T Consensus 108 ~~~~~~~~~~~~~~~d~~~~l~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~e 187 (251)
T 2fic_A 108 DEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 187 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q ss_pred HHHHhhhhccc
Q 044000 190 LDILVDDYSDY 200 (420)
Q Consensus 190 Ld~~VdD~~~y 200 (420)
|+.+-++|..+
T Consensus 188 l~~ak~~ye~l 198 (251)
T 2fic_A 188 LIKAQKVFEEM 198 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 243
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.30 E-value=1.2e+02 Score=21.41 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 044000 159 QDAKQKIAREIKAKDSAILAF 179 (420)
Q Consensus 159 Q~eIq~Lk~EIe~kD~~I~~l 179 (420)
|+.|+.|+++....|..|+.+
T Consensus 13 qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHHHHHhc
Confidence 777777777777777777653
No 244
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.26 E-value=3.4e+02 Score=21.87 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044000 156 LDLQDAKQKIAREIKAKDSAILAFANKIKEAERVL 190 (420)
Q Consensus 156 l~lQ~eIq~Lk~EIe~kD~~I~~lakkLKeAE~~L 190 (420)
++++.-|.+|++|....+..|.-+..+.+|-+.+|
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44577778888888888888888888887766554
No 245
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=20.23 E-value=4.7e+02 Score=24.93 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 044000 174 SAILAFANKIKEAERVLDILVDD 196 (420)
Q Consensus 174 ~~I~~lakkLKeAE~~Ld~~VdD 196 (420)
..|+.=+.||+.||..-...|.|
T Consensus 149 eKI~RNQsKLssAEtaYkqvcsD 171 (294)
T 3caz_A 149 ERIERNQQKFKDAEAAYSSVCAD 171 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhhhHHHHHHHHHHH
Confidence 46888899999998777666654
Done!