BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044004
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|B Chain B, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|C Chain C, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|D Chain D, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4EM5|A Chain A, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|B Chain B, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|C Chain C, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|D Chain D, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
Length = 541
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 105/185 (56%), Gaps = 14/185 (7%)
Query: 8 TVGALGDLAKKKIFPALFVLYYEDCLPEDFTVFGYARTKLTDEDMRNVISKTLT---CRI 64
+GA GDLAKKK FPALF LY LP D + GYAR+ T ED+ TL R+
Sbjct: 59 VLGASGDLAKKKTFPALFQLYCNGMLPRDVNILGYARS--TMEDVEKWKKDTLAGFFTRL 116
Query: 65 DMKENCEDKMDQFLKRCFYHSGLYNSEEHFAELDSKLKEKECKKMVFWARKLSNRLFYLS 124
D + C + FL+R Y +G Y+ +E FA L+ ++ E + K NRLFYL+
Sbjct: 117 D-ERGCH--VGNFLRRISYMTGSYDRDEDFARLNERILRME--EAFQGPEKGGNRLFYLA 171
Query: 125 IPPNIFVEVAKC---ASLRAPSTTGWTRVIVEKPFGRDSVSSGELTRSLKQYLRENQICR 181
+PP++FV V + +++ P GW R+IVEKPFGRD+ +S +L+ LK E Q+ R
Sbjct: 172 LPPSVFVGVCRGLSKGAMQKPE-LGWVRLIVEKPFGRDTETSEQLSNQLKPLFNERQVFR 230
Query: 182 FVSHL 186
+L
Sbjct: 231 IDHYL 235
>pdb|2BH9|A Chain A, X-Ray Structure Of A Deletion Variant Of Human Glucose 6-
Phosphate Dehydrogenase Complexed With Structural And
Coenzyme Nadp
pdb|2BHL|A Chain A, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
pdb|2BHL|B Chain B, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
Length = 489
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 9 VGALGDLAKKKIFPALFVLYYEDCLPEDFTVFGYARTKLTDEDMRNVISKTLTCRIDMKE 68
+GA GDLAKKKI+P ++ L+ + LPE+ + GYAR++LT D+R + K
Sbjct: 11 MGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKL 70
Query: 69 NCEDKMDQFLKRCFYHSGLYNSEEHFAELDSKLKEKECKKMVFWARKLSNRLFYLSIPPN 128
ED F R Y +G Y+ + L+S + +NRLFYL++PP
Sbjct: 71 KLED----FFARNSYVAGQYDDAASYQRLNSHMNALHLGSQ-------ANRLFYLALPPT 119
Query: 129 IFVEVAKCASLRAPSTTGWTRVIVEKPFGRDSVSSGELTRSLKQYLRENQICRFVSHLL 187
++ V K S GW R+IVEKPFGRD SS L+ + RE+QI R + H L
Sbjct: 120 VYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYR-IDHYL 177
>pdb|1QKI|A Chain A, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|B Chain B, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|C Chain C, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|D Chain D, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|E Chain E, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|F Chain F, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|G Chain G, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|H Chain H, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
Length = 514
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 9 VGALGDLAKKKIFPALFVLYYEDCLPEDFTVFGYARTKLTDEDMRNVISKTLTCRIDMKE 68
+GA GDLAKKKI+P ++ L+ + LPE+ + GYAR++LT D+R + K
Sbjct: 36 MGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKL 95
Query: 69 NCEDKMDQFLKRCFYHSGLYNSEEHFAELDSKLKEKECKKMVFWARKLSNRLFYLSIPPN 128
ED F R Y +G Y+ + L+S + +NRLFYL++PP
Sbjct: 96 KLED----FFARNSYVAGQYDDAASYQRLNSHMNALHLGSQ-------ANRLFYLALPPT 144
Query: 129 IFVEVAKCASLRAPSTTGWTRVIVEKPFGRDSVSSGELTRSLKQYLRENQICRFVSHLL 187
++ V K S GW R+IVEKPFGRD SS L+ + RE+QI R + H L
Sbjct: 145 VYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYR-IDHYL 202
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 11/179 (6%)
Query: 10 GALGDLAKKKIFPALFVLYYEDCLPEDFTVFGYARTKLTDEDMRNVISKTLTCRIDMKEN 69
G GDLAK+K++P++F LY + L + F + G AR L D++ + ++ ++ D +
Sbjct: 12 GGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQ 71
Query: 70 CEDKMDQFLKRCFYHSGLYNSEEHFAELDSKLKEKECKKMVFWARKLSNRLFYLSIPPNI 129
E F++ Y + +A L ++E K + NR+FY+S+ P
Sbjct: 72 AE----AFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDI-----DGNRIFYMSVAPRF 122
Query: 130 FVEVAK-CASLRAPSTTGWTRVIVEKPFGRDSVSSGELTRSLKQYLRENQICRFVSHLL 187
F +AK S + TG+ R+++EKPFG ++ EL L+ +NQ+ R ++H L
Sbjct: 123 FGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFR-INHYL 180
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 11/179 (6%)
Query: 10 GALGDLAKKKIFPALFVLYYEDCLPEDFTVFGYARTKLTDEDMRNVISKTLTCRIDMKEN 69
G GDLAK+K++P++F LY + L + F + G AR L D++ + ++ ++ D +
Sbjct: 12 GGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQ 71
Query: 70 CEDKMDQFLKRCFYHSGLYNSEEHFAELDSKLKEKECKKMVFWARKLSNRLFYLSIPPNI 129
E F++ Y + +A L ++E K + NR+FY+S+ P
Sbjct: 72 AE----AFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDI-----DGNRIFYMSVAPRF 122
Query: 130 FVEVAK-CASLRAPSTTGWTRVIVEKPFGRDSVSSGELTRSLKQYLRENQICRFVSHLL 187
F +AK S + TG+ R+++EKPFG ++ EL L+ +NQ+ R + H L
Sbjct: 123 FGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFR-IDHYL 180
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 11/179 (6%)
Query: 10 GALGDLAKKKIFPALFVLYYEDCLPEDFTVFGYARTKLTDEDMRNVISKTLTCRIDMKEN 69
G GDLAK+K++P++F LY + L + F + G AR L D++ + ++ ++ D +
Sbjct: 12 GGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQ 71
Query: 70 CEDKMDQFLKRCFYHSGLYNSEEHFAELDSKLKEKECKKMVFWARKLSNRLFYLSIPPNI 129
E F++ Y + +A L ++E K + NR+FY+S+ P
Sbjct: 72 AE----AFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDI-----DGNRIFYMSVAPRF 122
Query: 130 FVEVAK-CASLRAPSTTGWTRVIVEKPFGRDSVSSGELTRSLKQYLRENQICRFVSHLL 187
F +AK S + TG+ R+++EKPFG ++ EL L+ +NQ+ R + H L
Sbjct: 123 FGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFR-IDHYL 180
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 11/179 (6%)
Query: 10 GALGDLAKKKIFPALFVLYYEDCLPEDFTVFGYARTKLTDEDMRNVISKTLTCRIDMKEN 69
G GDLAK+K++P++F LY + L + F + G AR L D++ + ++ ++ D +
Sbjct: 12 GGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQ 71
Query: 70 CEDKMDQFLKRCFYHSGLYNSEEHFAELDSKLKEKECKKMVFWARKLSNRLFYLSIPPNI 129
E F++ Y + +A L ++E K + NR+FY+S+ P
Sbjct: 72 AE----AFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDI-----DGNRIFYMSVAPRF 122
Query: 130 FVEVAK-CASLRAPSTTGWTRVIVEKPFGRDSVSSGELTRSLKQYLRENQICRFVSHLL 187
F +AK S + TG+ R+++EKPFG ++ EL L+ +NQ+ R + H L
Sbjct: 123 FGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFR-IDHYL 180
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 10 GALGDLAKKKIFPALFVLYYEDCLPEDFTVFGYARTKLTDEDMRNVISKTLTCRIDMKEN 69
G GDLAK+K++P++F LY + L + F + G AR L D++ + ++ + D +
Sbjct: 12 GGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDCIKDFTDDQAQ 71
Query: 70 CEDKMDQFLKRCFYHSGLYNSEEHFAELDSKLKEKECKKMVFWARKLSNRLFYLSIPPNI 129
E F++ Y + +A L ++E K + NR+FY+S+ P
Sbjct: 72 AE----AFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDI-----DGNRIFYMSVAPRF 122
Query: 130 FVEVAK-CASLRAPSTTGWTRVIVEKPFGRDSVSSGELTRSLKQYLRENQICRFVSHLL 187
F +AK S + TG+ R+++EKPFG ++ EL L+ +NQ+ R + H L
Sbjct: 123 FGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFR-IDHYL 180
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 22 PALFVLYYEDCLPEDFTVFGYART 45
PAL Y+D P+D TV+ Y RT
Sbjct: 488 PALVYGAYQDLNPQDNTVYAYTRT 511
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 136 CASLRAPSTTGWTRVIVEKPFGRDSVSSGELTRSLKQYLRENQIC 180
C +L+A S ++ G D VS GE+ R+LK ++ +I
Sbjct: 62 CYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIV 106
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 136 CASLRAPSTTGWTRVIVEKPFGRDSVSSGELTRSLKQYLRENQIC 180
C +L+A S ++ G D VS GE+ R+LK ++ +I
Sbjct: 62 CYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIV 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,232,638
Number of Sequences: 62578
Number of extensions: 196923
Number of successful extensions: 420
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 13
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)