BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044005
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 33/166 (19%)
Query: 83 PISSSLGN------------NRLSGVIPPEIGLLTHLKHLHIDMNKLHGSENLKFLSTVD 130
PI SSL N N L G IPP I LT L +L+I + G+
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA---------- 116
Query: 131 LSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRA 190
+P+ L ++K L++L F+ N LSG + PSI SL NL G+ NR+S +I
Sbjct: 117 ---------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 191 KIGNLMQL-TELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGN 235
G+ +L T + + N+L G+IP + N +L V L +N L G+
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 82 PPISSSLGN--------NRLSGVIPPEIGLLTHL-KHLHIDMNKLHGSENLKF----LST 128
PP SSL N NR+SG IP G + L + I N+L G F L+
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201
Query: 129 VDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSI 188
VDLS+N K + A N L+ + +G NL GL L +NR+ ++
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL 260
Query: 189 RAKIGNLMQLTELEMDNNKLFGQIPK 214
+ L L L + N L G+IP+
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 59/110 (53%)
Query: 131 LSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRA 190
L N F+ +P +L L+SL + NYLSG I S+GSLS L+ L L+ N L I
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 191 KIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHI 240
++ + L L +D N L G+IP L N T+LN + L N L G + I
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 88 LGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPN 142
L NN +G IPP + + L LH+ N L G+ +L L + L N +P
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 143 SLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELE 202
L VK L +L N L+G I + + +NL + L +NRL+ I IG L L L+
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 203 MDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHRS 248
+ NN G IP L + SL + L N NG IP F +S
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT----IPAAMFKQS 559
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 150 LLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLF 209
++ L + N LSG I IGS+ L L L N +S SI ++G+L L L++ +NKL
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 210 GQIPKSLRNFTSLNRVHLEQNHLNG-----NTYEHIPEPNF 245
G+IP+++ T L + L N+L+G +E P F
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 731
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 129 VDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSI 188
+D+S N S +P + + L L N +SG I +G L L L L SN+L I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 189 RAKIGNLMQLTELEMDNNKLFGQIPK 214
+ L LTE+++ NN L G IP+
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 91 NRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLR 145
N LSG IP EIG + +L L++ N + GS +L+ L+ +DLS NK +P ++
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 146 KVKPLLSLGFALNYLSGVIAPSIG 169
+ L + + N LSG I P +G
Sbjct: 699 ALTMLTEIDLSNNNLSGPI-PEMG 721
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 88 LGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMP 141
LG+N +SG IP E+G L L L + NKL G L L+ +DLS N S +P
Sbjct: 660 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 32/175 (18%)
Query: 90 NNRLSGVIPPEIGLLTHLKHLHIDMNKLHG-----------------SEN---------- 122
NN +G+ P +G + L+HL I NKL G S N
Sbjct: 207 NNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 264
Query: 123 LKFLSTVDLSKNKFSSSMPNSLR-KVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYS 181
LK L + L++NKF+ +P+ L L L + N+ G + P GS S L+ L L S
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 182 NRLSRSIRAK-IGNLMQLTELEMDNNKLFGQIPKSLRNFT-SLNRVHLEQNHLNG 234
N S + + + L L++ N+ G++P+SL N + SL + L N+ +G
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 87 SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMP 141
SL NNRL+G IP IG L +L L + N G+ + + L +DL+ N F+ ++P
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 142 NSLRKVKPLLSLGFALNYLSGVIAPSI------------GSLSNLKGLYLYS-NRLSR-- 186
++ K S A N+++G I G+L +G+ NRLS
Sbjct: 553 AAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 187 --SIRAKI---------GNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGN 235
+I +++ N + L+M N L G IPK + + L ++L N ++G+
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 236 TYEHIPE 242
+ + +
Sbjct: 669 IPDEVGD 675
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 59/110 (53%)
Query: 131 LSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRA 190
L N F+ +P +L L+SL + NYLSG I S+GSLS L+ L L+ N L I
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 191 KIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHI 240
++ + L L +D N L G+IP L N T+LN + L N L G + I
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 88 LGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPN 142
L NN +G IPP + + L LH+ N L G+ +L L + L N +P
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 143 SLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELE 202
L VK L +L N L+G I + + +NL + L +NRL+ I IG L L L+
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 203 MDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHRS 248
+ NN G IP L + SL + L N NG IP F +S
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT----IPAAMFKQS 562
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 150 LLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLF 209
++ L + N LSG I IGS+ L L L N +S SI ++G+L L L++ +NKL
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 210 GQIPKSLRNFTSLNRVHLEQNHLNG-----NTYEHIPEPNF 245
G+IP+++ T L + L N+L+G +E P F
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 129 VDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSI 188
+D+S N S +P + + L L N +SG I +G L L L L SN+L I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 189 RAKIGNLMQLTELEMDNNKLFGQIPK 214
+ L LTE+++ NN L G IP+
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 91 NRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLR 145
N LSG IP EIG + +L L++ N + GS +L+ L+ +DLS NK +P ++
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 146 KVKPLLSLGFALNYLSGVIAPSIG 169
+ L + + N LSG I P +G
Sbjct: 702 ALTMLTEIDLSNNNLSGPI-PEMG 724
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 88 LGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMP 141
LG+N +SG IP E+G L L L + NKL G L L+ +DLS N S +P
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 32/175 (18%)
Query: 90 NNRLSGVIPPEIGLLTHLKHLHIDMNKLHG-----------------SEN---------- 122
NN +G+ P +G + L+HL I NKL G S N
Sbjct: 210 NNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267
Query: 123 LKFLSTVDLSKNKFSSSMPNSLR-KVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYS 181
LK L + L++NKF+ +P+ L L L + N+ G + P GS S L+ L L S
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 182 NRLSRSIRAK-IGNLMQLTELEMDNNKLFGQIPKSLRNFT-SLNRVHLEQNHLNG 234
N S + + + L L++ N+ G++P+SL N + SL + L N+ +G
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 87 SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMP 141
SL NNRL+G IP IG L +L L + N G+ + + L +DL+ N F+ ++P
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 142 NSLRKVKPLLSLGFALNYLSGVIAPSI------------GSLSNLKGLYLYS-NRLSR-- 186
++ K S A N+++G I G+L +G+ NRLS
Sbjct: 556 AAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 187 --SIRAKI---------GNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGN 235
+I +++ N + L+M N L G IPK + + L ++L N ++G+
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 236 TYEHIPE 242
+ + +
Sbjct: 672 IPDEVGD 678
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 10/151 (6%)
Query: 101 IGLLTHLKHLHIDMNKLHGSENLKFLSTVD---LSKNKFSSSMPNSL-RKVKPLLSLGFA 156
I L ++++L + NKLH LK L+ + L+ N+ S +PN + K+ L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLV 117
Query: 157 LNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSL 216
N L + L+NL LYLY N+L + L LT L++DNN+L +P+ +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGV 176
Query: 217 RNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247
F L L+Q LN N + +P+ F R
Sbjct: 177 --FDKL--TQLKQLSLNDNQLKSVPDGVFDR 203
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 81 TPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKL-------HGSENLKFLSTVDLSK 133
+P + NN L+ + G LT L+ L + MN+L + +K L +D+S+
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383
Query: 134 NKFS-SSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKI 192
N S K LLSL + N L+ I + +K L L+SN++ +SI ++
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQV 440
Query: 193 GNLMQLTELEMDNNKLFGQIPKSLRN-FTSLNRVHLEQN 230
L L EL + +N+L +P + + TSL ++ L N
Sbjct: 441 VKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 146 KVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSR--SIRAKIGNLMQLTELEM 203
K+ P L L F+ N L+ + + G L+ L+ L L N+L I + L +L++
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 204 DNNKLFGQIPKSLRNFT-SLNRVHLEQNHLNGNTYEHIP 241
N + K ++T SL +++ N L + +P
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Query: 88 LGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHG-----SENLKFLSTVDLSKNKFSSSMPN 142
L +N+L + L +L+ L + NKL + L L+ + L +N+ S P
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127
Query: 143 SLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELE 202
+ L L N L + L++LK L LY+N+L R L +L L+
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187
Query: 203 MDNNKLFGQIPKSLRNFTSLNRVHLEQ 229
+DNN+L ++P+ F SL ++ + Q
Sbjct: 188 LDNNQL-KRVPEGA--FDSLEKLKMLQ 211
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 129 VDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSI 188
+DL NK SS + ++ L L N L + A L NL+ L++ N+L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 189 RAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247
L+ L EL +D N+L P+ + T L + L N L + +P+ F +
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-----QSLPKGVFDK 155
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 104 LTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV 163
LT L ++ KL L L T+DLS N+ S +P + + L L + N L+ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Query: 164 IAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FTSL 222
++ L L+ LYL N L + +L +L + NN+L ++P L N +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENL 174
Query: 223 NRVHLEQNHL 232
+ + L++N L
Sbjct: 175 DTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 104 LTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV 163
LT L ++ KL L L T+DLS N+ S +P + + L L + N L+ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Query: 164 IAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FTSL 222
++ L L+ LYL N L + +L +L + NN+L ++P L N +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENL 174
Query: 223 NRVHLEQNHL 232
+ + L++N L
Sbjct: 175 DTLLLQENSL 184
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 91 NRLSGVIPPEIGLLTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPL 150
N L+ +I E+G LK I+ G + L ++ D + +P SL +
Sbjct: 142 NGLNQMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---- 196
Query: 151 LSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFG 210
L N ++ V A S+ L+NL L L N +S + N L EL ++NNKL
Sbjct: 197 --LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253
Query: 211 QIPKSLRNFTSLNRVHLEQNHLNG 234
++P L + + V+L N+++
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISA 277
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 85 SSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSL 144
S LG ++ +PP+ LL L++ I K +NLK L T+ L NK S P +
Sbjct: 38 CSDLGLEKVPKDLPPDTALL-DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96
Query: 145 RKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMD 204
+ L L + N L + +L L+ ++ N +++ ++ L Q+ +E+
Sbjct: 97 APLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELG 153
Query: 205 NNKL 208
N L
Sbjct: 154 TNPL 157
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 91 NRLSGVIPPEIGLLTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPL 150
N L+ +I E+G LK I+ G + L ++ D + +P SL +
Sbjct: 142 NGLNQMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---- 196
Query: 151 LSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFG 210
L N ++ V A S+ L+NL L L N +S + N L EL ++NNKL
Sbjct: 197 --LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253
Query: 211 QIPKSLRNFTSLNRVHLEQNHLNG 234
++P L + + V+L N+++
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISA 277
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 85 SSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSL 144
S LG ++ +PP+ LL L++ I K +NLK L T+ L NK S P +
Sbjct: 38 CSDLGLEKVPKDLPPDTALL-DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96
Query: 145 RKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMD 204
+ L L + N L + +L L+ ++ N +++ ++ L Q+ +E+
Sbjct: 97 APLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELG 153
Query: 205 NNKL 208
N L
Sbjct: 154 TNPL 157
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 104 LTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV 163
LT L ++ KL L L T+DLS N+ S +P + + L L + N L+ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Query: 164 IAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FTSL 222
++ L L+ LYL N L + +L +L + NN+L ++P L N +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENL 174
Query: 223 NRVHLEQNHL 232
+ + L++N L
Sbjct: 175 DTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 104 LTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV 163
LT L ++ KL L L T+DLS N+ S +P + + L L + N L+ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Query: 164 IAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FTSL 222
++ L L+ LYL N L + +L +L + NN+L ++P L N +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENL 174
Query: 223 NRVHLEQNHL 232
+ + L++N L
Sbjct: 175 DTLLLQENSL 184
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 177 LYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNT 236
LYLY NR+++ L QLT L++DNN+L +P + F L L Q LN N
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGV--FDKL--TQLTQLSLNDNQ 89
Query: 237 YEHIPEPNFH 246
+ IP F
Sbjct: 90 LKSIPRGAFD 99
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 101 IGLLTHLKHLHIDMNKLHGSENLKFLSTVD---LSKNKFSSSMPNSL-RKVKPLLSLGFA 156
I L ++++L + NKLH LK L+ + L+ N+ S +PN + K+ L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLV 117
Query: 157 LNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSL 216
N L + L+NL L L N+L + L LTEL++ N+L
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 217 RNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247
T L + L QN L + +P+ F R
Sbjct: 178 DKLTQLKDLRLYQNQL-----KSVPDGVFDR 203
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 7/149 (4%)
Query: 87 SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGSENLKF-----LSTVDLSKNKFSSSMP 141
+LG N+L + + LT+L +L + N+L N F L + L +N+ S
Sbjct: 69 ALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 142 NSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTEL 201
K+ L L A N L + L+NL L L N+L L QL +L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 202 EMDNNKLFGQIPKSLRNFTSLNRVHLEQN 230
+ N+L TSL + L N
Sbjct: 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 104 LTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV 163
LT L ++ KL L L T+DLS N+ S +P + + L L + N L+ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Query: 164 IAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FTSL 222
++ L L+ LYL N L + +L +L + NN L ++P L N +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL-TELPAGLLNGLENL 174
Query: 223 NRVHLEQNHL 232
+ + L++N L
Sbjct: 175 DTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 104 LTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV 163
LT L ++ KL L L T+DLS N+ S +P + + L L + N L+ +
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 116
Query: 164 IAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FTSL 222
++ L L+ LYL N L + +L +L + NN L ++P L N +L
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENL 175
Query: 223 NRVHLEQNHL 232
+ + L++N L
Sbjct: 176 DTLLLQENSL 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 104 LTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV 163
LT L ++ KL L L T+DLS N+ S +P + + L L + N L+ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Query: 164 IAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FTSL 222
++ L L+ LYL N L + +L +L + NN L ++P L N +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENL 174
Query: 223 NRVHLEQNHL 232
+ + L++N L
Sbjct: 175 DTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 105 THLKHLHID---MNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS 161
T L L++D + KL L L T+DLS N+ S +P + + L L + N L+
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 162 GVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FT 220
+ ++ L L+ LYL N L + +L +L + NN L ++P L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLE 172
Query: 221 SLNRVHLEQNHL 232
+L+ + L++N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 105 THLKHLHID---MNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS 161
T L L++D + KL L L T+DLS N+ S +P + + L L + N L+
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 162 GVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FT 220
+ ++ L L+ LYL N L + +L +L + NN L ++P L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLE 172
Query: 221 SLNRVHLEQNHL 232
+L+ + L++N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 105 THLKHLHID---MNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS 161
T L L++D + KL L L T+DLS N+ S +P + + L L + N L+
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 162 GVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FT 220
+ ++ L L+ LYL N L + +L +L + NN L ++P L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLE 172
Query: 221 SLNRVHLEQNHL 232
+L+ + L++N L
Sbjct: 173 NLDTLLLQENSL 184
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 177 LYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNT 236
LYLY N++++ L QLT L++DNN+L +P + F L L Q LN N
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGV--FDKL--TQLTQLSLNDNQ 97
Query: 237 YEHIPEPNFH 246
+ IP F
Sbjct: 98 LKSIPRGAFD 107
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 177 LYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNT 236
LYLY N++++ L QLT L++DNN+L +P + F L L Q LN N
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGV--FDKL--TQLTQLSLNDNQ 89
Query: 237 YEHIPEPNFH 246
+ IP F
Sbjct: 90 LKSIPRGAFD 99
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 131 LSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRA 190
L N+ + P + L L N L + SL+ L L L +N+L+ A
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106
Query: 191 KIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247
L+ L EL M NKL ++P+ + T L + L+QN L + IP F R
Sbjct: 107 VFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL-----KSIPHGAFDR 157
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 104 LTHLKHLHIDMNKLHGSE---NLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYL 160
LT L+ L+ N++ + NL L +D+S NK S + L K+ L SL N +
Sbjct: 150 LTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 207
Query: 161 SGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFT 220
S I P +G L+NL L L N+L + I + +L LT+L++ NN++ P L T
Sbjct: 208 SD-ITP-LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLT 261
Query: 221 SLNRVHLEQNHL 232
L + L N +
Sbjct: 262 KLTELKLGANQI 273
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 30/133 (22%)
Query: 100 EIGLLTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY 159
++ +T L+ + + + G E L L+ ++ S N+ + P L+ + L+ + N
Sbjct: 39 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 96
Query: 160 LSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNF 219
++ I P + +L+NL GL L++N Q+T+++ L+N
Sbjct: 97 IAD-ITP-LANLTNLTGLTLFNN--------------QITDID------------PLKNL 128
Query: 220 TSLNRVHLEQNHL 232
T+LNR+ L N +
Sbjct: 129 TNLNRLELSSNTI 141
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 104 LTHLKHLHIDMNKLHGSE---NLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYL 160
LT L+ L N++ + NL L +D+S NK S + L K+ L SL N +
Sbjct: 150 LTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 207
Query: 161 SGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFT 220
S I P +G L+NL L L N+L + I + +L LT+L++ NN++ P L T
Sbjct: 208 SD-ITP-LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLT 261
Query: 221 SLNRVHLEQNHL 232
L + L N +
Sbjct: 262 KLTELKLGANQI 273
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 30/133 (22%)
Query: 100 EIGLLTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY 159
++ +T L+ + + + G E L L+ ++ S N+ + P L+ + L+ + N
Sbjct: 39 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 96
Query: 160 LSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNF 219
++ I P + +L+NL GL L++N Q+T+++ L+N
Sbjct: 97 IAD-ITP-LANLTNLTGLTLFNN--------------QITDID------------PLKNL 128
Query: 220 TSLNRVHLEQNHL 232
T+LNR+ L N +
Sbjct: 129 TNLNRLELSSNTI 141
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 104 LTHLKHLHIDMNKLHGSE---NLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYL 160
LT L+ L N++ + NL L +D+S NK S + L K+ L SL N +
Sbjct: 150 LTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 207
Query: 161 SGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFT 220
S I P +G L+NL L L N+L + I + +L LT+L++ NN++ P L T
Sbjct: 208 SD-ITP-LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLT 261
Query: 221 SLNRVHLEQNHL 232
L + L N +
Sbjct: 262 KLTELKLGANQI 273
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 30/133 (22%)
Query: 100 EIGLLTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY 159
++ +T L+ + + + G E L L+ ++ S N+ + P L+ + L+ + N
Sbjct: 39 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 96
Query: 160 LSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNF 219
++ I P + +L+NL GL L++N Q+T+++ L+N
Sbjct: 97 IAD-ITP-LANLTNLTGLTLFNN--------------QITDID------------PLKNL 128
Query: 220 TSLNRVHLEQNHL 232
T+LNR+ L N +
Sbjct: 129 TNLNRLELSSNTI 141
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 87 SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGSENLKFLS-----TVDLSKNKFSSSMP 141
L N+L+G+ P +H++ L + NK+ N FL T++L N+ S MP
Sbjct: 60 ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Query: 142 NSLRKVKPLLSLGFALN 158
S + L SL A N
Sbjct: 120 GSFEHLNSLTSLNLASN 136
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%)
Query: 123 LKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSN 182
L L ++L +N+ + PN+ + L N + + L LK L LY N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 183 RLSRSIRAKIGNLMQLTELEMDNN 206
++S + +L LT L + +N
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 104 LTHLKHLHI--DMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS 161
LT L+ L+ + L NL L +D+S NK S + L K+ L SL N +S
Sbjct: 150 LTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 207
Query: 162 GVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTS 221
I P +G L+NL L L N+L + I + +L LT+L++ NN++ P L T
Sbjct: 208 D-ITP-LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTK 261
Query: 222 LNRVHLEQNHL 232
L + L N +
Sbjct: 262 LTELKLGANQI 272
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 30/133 (22%)
Query: 100 EIGLLTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY 159
++ +T L+ + + + G E L L+ ++ S N+ + P L+ + L+ + N
Sbjct: 39 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 96
Query: 160 LSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNF 219
++ I P + +L+NL GL L++N Q+T+++ L+N
Sbjct: 97 IAD-ITP-LANLTNLTGLTLFNN--------------QITDID------------PLKNL 128
Query: 220 TSLNRVHLEQNHL 232
T+LNR+ L N +
Sbjct: 129 TNLNRLELSSNTI 141
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 104 LTHLKHLHI--DMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS 161
LT L+ L+ + L NL L +D+S NK S + L K+ L SL N +S
Sbjct: 150 LTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 207
Query: 162 GVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTS 221
I P +G L+NL L L N+L + I + +L LT+L++ NN++ P L T
Sbjct: 208 D-ITP-LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTK 261
Query: 222 LNRVHLEQNHL 232
L + L N +
Sbjct: 262 LTELKLGANQI 272
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 30/133 (22%)
Query: 100 EIGLLTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY 159
++ +T L+ + + + G E L L+ ++ S N+ + P L+ + L+ + N
Sbjct: 39 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 96
Query: 160 LSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNF 219
++ I P + +L+NL GL L++N Q+T+++ L+N
Sbjct: 97 IAD-ITP-LANLTNLTGLTLFNN--------------QITDID------------PLKNL 128
Query: 220 TSLNRVHLEQNHL 232
T+LNR+ L N +
Sbjct: 129 TNLNRLELSSNTI 141
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 104 LTHLKHLHI--DMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS 161
LT L+ L + L NL L +D+S NK S + L K+ L SL N +S
Sbjct: 154 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 211
Query: 162 GVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTS 221
I P +G L+NL L L N+L + I + +L LT+L++ NN++ P L T
Sbjct: 212 D-ITP-LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTK 265
Query: 222 LNRVHLEQNHL 232
L + L N +
Sbjct: 266 LTELKLGANQI 276
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 30/133 (22%)
Query: 100 EIGLLTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY 159
++ +T L+ + + + G E L L+ ++ S N+ + P L+ + L+ + N
Sbjct: 43 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 100
Query: 160 LSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNF 219
++ I P + +L+NL GL L++N Q+T+++ L+N
Sbjct: 101 IAD-ITP-LANLTNLTGLTLFNN--------------QITDID------------PLKNL 132
Query: 220 TSLNRVHLEQNHL 232
T+LNR+ L N +
Sbjct: 133 TNLNRLELSSNTI 145
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 104 LTHLKHLHI--DMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS 161
LT L+ L + L NL L +D+S NK S + L K+ L SL N +S
Sbjct: 155 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 212
Query: 162 GVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTS 221
I P +G L+NL L L N+L + I + +L LT+L++ NN++ P L T
Sbjct: 213 D-ITP-LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTK 266
Query: 222 LNRVHLEQNHL 232
L + L N +
Sbjct: 267 LTELKLGANQI 277
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 30/133 (22%)
Query: 100 EIGLLTHLKHLHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY 159
++ +T L+ + + + G E L L+ ++ S N+ + P L+ + L+ + N
Sbjct: 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 101
Query: 160 LSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNF 219
++ I P + +L+NL GL L++N Q+T+++ L+N
Sbjct: 102 IAD-ITP-LANLTNLTGLTLFNN--------------QITDID------------PLKNL 133
Query: 220 TSLNRVHLEQNHL 232
T+LNR+ L N +
Sbjct: 134 TNLNRLELSSNTI 146
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 129 VDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSI 188
++L NK S K+ L L + N + + L+ L LYL+ N+L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 189 RAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FTSLNRVHLEQN 230
L QL EL +D N+L +P + + TSL ++ L N
Sbjct: 93 NGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 134
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 85 SSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHG---SENLKFLSTVDLSKNKFSSSMP 141
S SL N++ + P + LT L + +N++ N L+++ + NK + P
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSP 238
Query: 142 NSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTEL 201
L + L L N +S + A + L+ LK L + SN++S + + NL QL L
Sbjct: 239 --LANLSQLTWLEIGTNQISDINA--VKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSL 292
Query: 202 EMDNNKLFGQIPKSLRNFTSLNRVHLEQNHL 232
++NN+L + + + T+L + L QNH+
Sbjct: 293 FLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 171 LSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPK-SLRNFTSLNRVHLEQ 229
L NL+ LY SN+L+ L QLT+L++++N L IP+ + N SL ++L
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYN 114
Query: 230 N 230
N
Sbjct: 115 N 115
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 112 IDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSL 171
+D HG L L T+ L + P R + L L N L + + L
Sbjct: 96 VDPATFHG---LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 172 SNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNH 231
NL L+L+ NR+S L L L + N++ P + R+ L ++L N+
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 232 LNGNTYEHI 240
L+ E +
Sbjct: 213 LSALPTEAL 221
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 112 IDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSL 171
+D HG L L T+ L + P R + L L N L + + L
Sbjct: 95 VDPATFHG---LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 151
Query: 172 SNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNH 231
NL L+L+ NR+S L L L + N++ P + R+ L ++L N+
Sbjct: 152 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 211
Query: 232 LNGNTYEHI 240
L+ E +
Sbjct: 212 LSALPTEAL 220
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Query: 126 LSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLS 185
L+ ++L N+ + + L +LG A N L+ + L+ L LYL N+L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 186 RSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNF 245
L +L EL ++ N+L + T+L + L N L + +P F
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-----QSVPHGAF 175
Query: 246 HR 247
R
Sbjct: 176 DR 177
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 119 GSENLKFLSTVD---LSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLK 175
GS NL+ +D + F + PN R+ + LL +N + S+G L NL
Sbjct: 126 GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185
Query: 176 GLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN 218
Y + NL + EL D+ +L+ ++ +L N
Sbjct: 186 NNY----------DSAAANLRRAVELRPDDAQLWNKLGATLAN 218
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 119 GSENLKFLSTVD---LSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLK 175
GS NL+ +D + F + PN R+ + LL +N + S+G L NL
Sbjct: 126 GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185
Query: 176 GLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN 218
Y + NL + EL D+ +L+ ++ +L N
Sbjct: 186 NNY----------DSAAANLRRAVELRPDDAQLWNKLGATLAN 218
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Query: 126 LSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLS 185
L+ ++L N+ + + L +LG A N L+ + L+ L LYL N+L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 186 RSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNF 245
L +L EL ++ N+L + T+L + L N L + +P F
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-----QSVPHGAF 175
Query: 246 HR 247
R
Sbjct: 176 DR 177
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 96 VIPPEIGLLTHLKHLHIDMNKLHGSENLKF-----LSTVDLSKNKFSSSMPNSLRKVKPL 150
V PE G+ T + L + N++ +F L ++L++N S+ P + + L
Sbjct: 24 VAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 151 LSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFG 210
+LG N L + LSNL L + N++ + +L L LE+ +N L
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142
Query: 211 QIPKSLRNFTSLNRVHLEQNHL 232
++ SL ++ LE+ +L
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNL 164
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 129 VDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSI 188
++L +N+ NS + ++ L L + N++ + + L+NL L L+ NRL+
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 189 RAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQ 229
L +L EL + NN + + SL R+ L +
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 33/151 (21%)
Query: 92 RLSGVIPPEIGLLTHLKHLHIDMNKLHGSENLK---FLSTVDLSKNKFSSSMPNSLRKVK 148
RLS + L++L++L++ M L NL L +DLS N S+ P S +
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQ--- 228
Query: 149 PLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKL 208
L +L+ L++ +++ R NL L E+ + +N L
Sbjct: 229 ---------------------GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 209 FGQIPKSLRNFTS---LNRVHLEQNHLNGNT 236
+P L FT L R+HL N N N
Sbjct: 268 -TLLPHDL--FTPLHHLERIHLHHNPWNCNC 295
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 7/138 (5%)
Query: 102 GLLTHLKHLHIDMNKLHGSENLKF-----LSTVDLSKNKFSSSMPNSL-RKVKPLLSLGF 155
G+ +L ++ N L N F L+ + L NK S +PN + K+ L L
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNL 83
Query: 156 ALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKS 215
+ N L + L+ LK L L +N+L L QL +L + N+L
Sbjct: 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143
Query: 216 LRNFTSLNRVHLEQNHLN 233
TSL + L N +
Sbjct: 144 FDRLTSLQYIWLHDNPWD 161
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 129 VDLSKNKFSSSMPNSL-RKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRS 187
+DL N S +PN + ++ L L N L + L++L L L +N+L
Sbjct: 33 LDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 188 IRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247
L QL EL ++ N+L T L + L QN L + +P+ F R
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-----KSVPDGVFDR 146
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 144 LRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEM 203
L + L + G + + GV L+NL GL L N+++ A + NL ++TELE+
Sbjct: 40 LDGITTLSAFGTGVTTIEGV-----QYLNNLIGLELKDNQITD--LAPLKNLTKITELEL 92
Query: 204 DNNKL 208
N L
Sbjct: 93 SGNPL 97
>pdb|1KZX|A Chain A, Solution Structure Of Human Intestinal Fatty Acid Binding
Protein With A Naturally-Occurring Single Amino Acid
Substitution (A54t)
Length = 131
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 116 KLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY 159
KL +NLK T+ NKF+ ++ R ++ + LG NY
Sbjct: 29 KLAAHDNLKL--TITQEGNKFTVKESSTFRNIEVVFELGVTFNY 70
>pdb|3IFB|A Chain A, Nmr Study Of Human Intestinal Fatty Acid Binding Protein
pdb|3AKM|A Chain A, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
pdb|3AKM|B Chain B, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
pdb|3AKM|C Chain C, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
pdb|3AKM|D Chain D, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
Length = 131
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 110 LHIDMNKLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY 159
++I KL +NLK T+ NKF+ ++ R ++ + LG NY
Sbjct: 23 VNIVKRKLAAHDNLKL--TITQEGNKFTVKESSAFRNIEVVFELGVTFNY 70
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 87 SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS------ENLKFLSTVDLSKNKFSSSM 140
+L N ++ + LTHL L++ N L GS ENL L +DLS N +
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALG 363
Query: 141 PNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSN 182
S + L L N L V L++L+ ++L++N
Sbjct: 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|1KZW|A Chain A, Solution Structure Of Human Intestinal Fatty Acid Binding
Protein
Length = 131
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 116 KLHGSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY 159
KL +NLK T+ NKF+ ++ R ++ + LG NY
Sbjct: 29 KLAAHDNLKL--TITQEGNKFTVKESSAFRNIEVVFELGVTFNY 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,706,868
Number of Sequences: 62578
Number of extensions: 252377
Number of successful extensions: 779
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 183
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)