Query 044005
Match_columns 248
No_of_seqs 163 out of 1786
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 10:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.9E-28 4.1E-33 234.5 13.4 232 9-245 44-309 (968)
2 PLN00113 leucine-rich repeat r 99.9 2.5E-23 5.4E-28 199.4 12.8 157 87-243 194-355 (968)
3 KOG4194 Membrane glycoprotein 99.8 5.1E-20 1.1E-24 159.3 -0.0 157 87-243 275-439 (873)
4 KOG4194 Membrane glycoprotein 99.8 2.5E-19 5.4E-24 155.1 2.9 200 34-240 125-337 (873)
5 KOG0617 Ras suppressor protein 99.8 2E-20 4.3E-25 139.4 -3.9 179 32-238 31-217 (264)
6 KOG0444 Cytoskeletal regulator 99.7 1.2E-19 2.6E-24 158.5 -1.3 205 33-246 77-318 (1255)
7 KOG0444 Cytoskeletal regulator 99.7 1.2E-18 2.5E-23 152.4 -0.2 142 87-232 228-374 (1255)
8 KOG0472 Leucine-rich repeat pr 99.7 1.6E-18 3.5E-23 144.2 -0.4 110 121-233 432-541 (565)
9 KOG0472 Leucine-rich repeat pr 99.7 5E-18 1.1E-22 141.4 -2.2 205 33-247 67-300 (565)
10 KOG0617 Ras suppressor protein 99.6 2.9E-18 6.2E-23 128.0 -6.3 159 67-246 35-198 (264)
11 PRK15387 E3 ubiquitin-protein 99.5 1.7E-14 3.7E-19 132.8 7.8 122 106-240 343-465 (788)
12 KOG0618 Serine/threonine phosp 99.5 5.8E-15 1.3E-19 134.0 4.0 106 122-231 381-487 (1081)
13 PLN03210 Resistant to P. syrin 99.5 1.6E-13 3.4E-18 133.6 14.1 117 125-246 779-895 (1153)
14 PRK15370 E3 ubiquitin-protein 99.5 4.2E-14 9.1E-19 130.6 9.5 174 35-233 200-380 (754)
15 KOG4237 Extracellular matrix p 99.5 2.1E-15 4.5E-20 125.6 0.3 205 34-246 67-348 (498)
16 cd00116 LRR_RI Leucine-rich re 99.5 1.3E-14 2.9E-19 122.3 4.7 138 99-236 130-294 (319)
17 PLN03210 Resistant to P. syrin 99.5 4.6E-13 1E-17 130.4 13.3 197 34-246 611-871 (1153)
18 PRK15370 E3 ubiquitin-protein 99.5 4.3E-14 9.3E-19 130.5 5.5 179 34-238 220-405 (754)
19 KOG0618 Serine/threonine phosp 99.5 3.7E-15 8.1E-20 135.2 -1.8 196 33-240 240-473 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.5 4.6E-14 1E-18 119.0 4.8 148 87-234 87-264 (319)
21 PRK15387 E3 ubiquitin-protein 99.4 6.7E-12 1.5E-16 115.9 11.8 119 106-238 283-419 (788)
22 KOG4237 Extracellular matrix p 99.3 1.5E-13 3.2E-18 114.6 0.1 194 33-233 90-359 (498)
23 KOG0532 Leucine-rich repeat (L 99.3 1.4E-13 3.1E-18 119.4 -3.4 174 35-239 76-252 (722)
24 PLN03150 hypothetical protein; 99.3 1.7E-11 3.6E-16 112.4 9.2 125 14-161 390-528 (623)
25 COG4886 Leucine-rich repeat (L 99.2 9.9E-12 2.1E-16 108.2 5.7 176 34-239 116-296 (394)
26 PLN03150 hypothetical protein; 99.2 5.6E-11 1.2E-15 108.9 9.3 112 126-237 420-532 (623)
27 PF14580 LRR_9: Leucine-rich r 99.2 1.7E-11 3.7E-16 94.0 4.8 122 103-227 17-147 (175)
28 KOG1909 Ran GTPase-activating 99.2 2.1E-11 4.6E-16 100.4 4.0 164 66-232 93-310 (382)
29 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.4E-16 104.7 0.7 181 33-234 145-340 (505)
30 KOG1259 Nischarin, modulator o 99.1 9.9E-12 2.1E-16 100.8 -0.6 124 67-210 286-413 (490)
31 PF14580 LRR_9: Leucine-rich r 99.1 9.6E-11 2.1E-15 89.9 4.7 109 122-234 17-127 (175)
32 KOG0532 Leucine-rich repeat (L 99.1 2E-12 4.3E-17 112.4 -5.5 145 96-247 89-237 (722)
33 COG4886 Leucine-rich repeat (L 99.0 4.6E-10 1E-14 97.7 5.4 157 66-245 117-278 (394)
34 KOG1259 Nischarin, modulator o 99.0 1.5E-10 3.2E-15 94.1 1.8 124 105-233 284-412 (490)
35 KOG3207 Beta-tubulin folding c 99.0 5.3E-11 1.2E-15 100.7 -1.2 180 34-233 121-314 (505)
36 PF13855 LRR_8: Leucine rich r 98.8 5.5E-09 1.2E-13 66.1 3.9 60 173-232 2-61 (61)
37 KOG1859 Leucine-rich repeat pr 98.8 1.1E-10 2.4E-15 104.4 -5.5 119 87-209 170-292 (1096)
38 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.3E-13 64.7 3.6 59 125-183 2-60 (61)
39 COG5238 RNA1 Ran GTPase-activa 98.6 2.7E-08 5.9E-13 80.0 4.0 202 33-238 29-290 (388)
40 KOG0531 Protein phosphatase 1, 98.6 4.7E-09 1E-13 92.0 -0.7 126 102-233 137-268 (414)
41 KOG1909 Ran GTPase-activating 98.6 2.8E-08 6.1E-13 82.2 3.3 173 33-208 91-310 (382)
42 KOG2120 SCF ubiquitin ligase, 98.4 1.5E-08 3.2E-13 82.5 -3.0 174 35-230 186-373 (419)
43 KOG1859 Leucine-rich repeat pr 98.4 2.1E-08 4.6E-13 90.1 -2.6 131 98-234 102-268 (1096)
44 KOG0531 Protein phosphatase 1, 98.4 1.9E-08 4E-13 88.3 -3.1 127 101-234 114-246 (414)
45 KOG4658 Apoptotic ATPase [Sign 98.4 3.4E-07 7.3E-12 86.7 4.0 175 33-234 544-731 (889)
46 KOG2982 Uncharacterized conser 98.2 2.4E-07 5.2E-12 75.5 0.4 187 34-226 71-285 (418)
47 KOG4579 Leucine-rich repeat (L 98.2 5.4E-08 1.2E-12 70.6 -4.0 101 66-185 28-136 (177)
48 COG5238 RNA1 Ran GTPase-activa 98.1 1.5E-06 3.3E-11 70.1 3.1 178 58-238 23-260 (388)
49 KOG3665 ZYG-1-like serine/thre 98.1 1.2E-06 2.6E-11 81.0 2.7 105 104-210 147-264 (699)
50 KOG1644 U2-associated snRNP A' 98.1 6E-06 1.3E-10 63.8 5.9 78 107-184 44-125 (233)
51 KOG4579 Leucine-rich repeat (L 98.1 3.3E-07 7.1E-12 66.6 -1.8 130 106-239 28-165 (177)
52 KOG2120 SCF ubiquitin ligase, 98.0 1.4E-07 3E-12 76.9 -4.6 172 35-230 211-397 (419)
53 KOG3665 ZYG-1-like serine/thre 98.0 1.2E-06 2.7E-11 80.9 0.8 132 105-238 122-268 (699)
54 PF12799 LRR_4: Leucine Rich r 98.0 7E-06 1.5E-10 48.0 3.4 36 197-233 2-37 (44)
55 KOG4658 Apoptotic ATPase [Sign 98.0 7.1E-06 1.5E-10 77.9 5.1 123 105-228 545-676 (889)
56 PF12799 LRR_4: Leucine Rich r 97.9 2E-05 4.4E-10 46.0 3.4 36 125-161 2-37 (44)
57 PRK15386 type III secretion pr 97.8 9E-05 1.9E-09 64.1 8.5 76 58-160 45-124 (426)
58 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.5E-09 56.9 5.1 121 107-229 21-149 (233)
59 PRK15386 type III secretion pr 97.5 0.00052 1.1E-08 59.5 8.8 134 34-206 52-187 (426)
60 KOG2982 Uncharacterized conser 97.5 4.8E-05 1E-09 62.4 1.8 181 36-236 47-265 (418)
61 KOG2739 Leucine-rich acidic nu 97.4 0.00014 3E-09 58.5 2.8 105 98-202 36-149 (260)
62 KOG2739 Leucine-rich acidic nu 97.1 0.00036 7.8E-09 56.1 2.4 104 121-226 40-149 (260)
63 KOG2123 Uncharacterized conser 97.1 3.5E-05 7.6E-10 62.6 -3.4 99 124-226 19-123 (388)
64 KOG2123 Uncharacterized conser 97.0 2.6E-05 5.6E-10 63.4 -4.2 99 29-154 14-123 (388)
65 PF13306 LRR_5: Leucine rich r 96.9 0.0048 1E-07 44.5 7.2 118 99-222 6-128 (129)
66 PF08263 LRRNT_2: Leucine rich 96.8 0.00032 7E-09 40.7 0.3 30 2-31 12-43 (43)
67 PF13306 LRR_5: Leucine rich r 96.3 0.013 2.8E-07 42.2 6.1 119 121-245 9-127 (129)
68 PF00560 LRR_1: Leucine Rich R 95.8 0.0033 7.1E-08 30.7 0.4 19 222-241 2-20 (22)
69 KOG4308 LRR-containing protein 95.7 5.1E-05 1.1E-09 67.5 -11.0 183 36-233 89-303 (478)
70 PF00560 LRR_1: Leucine Rich R 94.9 0.013 2.8E-07 28.5 1.0 20 35-55 1-20 (22)
71 KOG1947 Leucine rich repeat pr 94.7 0.0078 1.7E-07 53.4 -0.2 58 103-160 241-307 (482)
72 KOG4308 LRR-containing protein 93.7 0.00066 1.4E-08 60.5 -9.1 163 33-210 114-304 (478)
73 KOG3864 Uncharacterized conser 93.0 0.018 3.8E-07 45.0 -1.0 82 125-206 102-186 (221)
74 KOG1947 Leucine rich repeat pr 92.5 0.065 1.4E-06 47.6 1.7 12 219-230 294-305 (482)
75 PF13504 LRR_7: Leucine rich r 92.4 0.088 1.9E-06 23.8 1.2 12 221-232 2-13 (17)
76 KOG4341 F-box protein containi 91.6 0.022 4.7E-07 49.1 -2.3 35 196-230 401-436 (483)
77 PF13516 LRR_6: Leucine Rich r 91.5 0.063 1.4E-06 26.5 0.2 22 34-55 2-23 (24)
78 KOG4341 F-box protein containi 88.4 0.16 3.5E-06 44.0 0.4 127 101-227 316-459 (483)
79 KOG3864 Uncharacterized conser 87.7 0.079 1.7E-06 41.4 -1.7 81 149-229 102-185 (221)
80 KOG0473 Leucine-rich repeat pr 87.5 0.0053 1.1E-07 49.0 -8.4 64 168-233 61-124 (326)
81 smart00370 LRR Leucine-rich re 87.2 0.69 1.5E-05 23.1 2.2 14 124-137 2-15 (26)
82 smart00369 LRR_TYP Leucine-ric 87.2 0.69 1.5E-05 23.1 2.2 14 124-137 2-15 (26)
83 KOG0473 Leucine-rich repeat pr 83.4 0.025 5.5E-07 45.2 -6.3 82 101-184 38-123 (326)
84 smart00368 LRR_RI Leucine rich 82.4 0.64 1.4E-05 23.9 0.7 22 34-55 2-23 (28)
85 smart00365 LRR_SD22 Leucine-ri 79.5 1.6 3.4E-05 22.1 1.6 12 125-136 3-14 (26)
86 KOG3763 mRNA export factor TAP 72.8 2.3 5E-05 38.4 1.8 78 31-130 215-307 (585)
87 smart00364 LRR_BAC Leucine-ric 68.4 3.8 8.3E-05 20.7 1.3 17 221-238 3-19 (26)
88 smart00367 LRR_CC Leucine-rich 65.2 1 2.2E-05 22.5 -1.1 11 220-230 2-12 (26)
89 KOG3763 mRNA export factor TAP 63.2 5.2 0.00011 36.2 2.1 31 104-134 217-254 (585)
90 KOG4242 Predicted myosin-I-bin 61.3 50 0.0011 29.7 7.6 21 35-55 215-235 (553)
91 KOG4242 Predicted myosin-I-bin 23.0 1.6E+02 0.0034 26.7 4.5 60 125-184 414-480 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.9e-28 Score=234.51 Aligned_cols=232 Identities=31% Similarity=0.433 Sum_probs=144.5
Q ss_pred CccccCCcccCCCC-CccceeeeCCCCcEEEEeeCCCccccccCcchhHHHHHHHhhh-------------------cee
Q 044005 9 EPLLLSLWNLYPIN-ATNFGIHCNSAKRVISINLNTIGLKVRFTNSHSHQFLILHILI-------------------KAS 68 (248)
Q Consensus 9 ~~~~~~~w~~~~~~-~~~~~~~c~~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~-------------------~L~ 68 (248)
++..+++|.. ..+ |.|.|++|+..++++.|+++++.+.+..+..+. .++.|+.|+ +|+
T Consensus 44 ~~~~~~~w~~-~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~-~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~ 121 (968)
T PLN00113 44 PLKYLSNWNS-SADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIF-RLPYIQTINLSNNQLSGPIPDDIFTTSSSLR 121 (968)
T ss_pred CcccCCCCCC-CCCCCcCcceecCCCCcEEEEEecCCCccccCChHHh-CCCCCCEEECCCCccCCcCChHHhccCCCCC
Confidence 4456789974 455 999999998778999999999998887777777 677722221 344
Q ss_pred EEEeccccccccCCCCCc---------CCCCCcccccCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCC
Q 044005 69 IYYLASYRLKLATPPISS---------SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKN 134 (248)
Q Consensus 69 ~L~ls~n~~~~~~~~~~~---------~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n 134 (248)
+|++++|.+ .+.+|. ++++|.+.+.+|..++.+++|++|++++|.+.+. ..+++|++|++++|
T Consensus 122 ~L~Ls~n~l---~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 122 YLNLSNNNF---TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred EEECcCCcc---ccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 444444444 333332 5555666556666666666777777766665432 44556666666666
Q ss_pred ccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccc
Q 044005 135 KFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPK 214 (248)
Q Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (248)
.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence 66555566666666666666666666655555566666666666666666555555555556666666666655555555
Q ss_pred cccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 044005 215 SLRNFTSLNRVHLEQNHLNGNTYEHIPEPNF 245 (248)
Q Consensus 215 ~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~ 245 (248)
.+..+++|++|++++|.+.+.+|..++.+..
T Consensus 279 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred hHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 5555555555555555555555554444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=2.5e-23 Score=199.36 Aligned_cols=157 Identities=34% Similarity=0.463 Sum_probs=79.2
Q ss_pred CCCCCcccccCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCC
Q 044005 87 SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS 161 (248)
Q Consensus 87 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 161 (248)
++++|.+.+.+|..+..+++|++|++++|.+++. ..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 4444555444555555555555555555544332 34445555555555554444555555555555555555554
Q ss_pred CCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCC
Q 044005 162 GVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIP 241 (248)
Q Consensus 162 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~ 241 (248)
+..|..+..+.+|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..++
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 44444445555555555555555444444445555555555555555544444445555555555555555544444444
Q ss_pred CC
Q 044005 242 EP 243 (248)
Q Consensus 242 ~l 243 (248)
.+
T Consensus 354 ~~ 355 (968)
T PLN00113 354 KH 355 (968)
T ss_pred CC
Confidence 43
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=5.1e-20 Score=159.33 Aligned_cols=157 Identities=24% Similarity=0.271 Sum_probs=97.8
Q ss_pred CCCCCcccccCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCC
Q 044005 87 SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS 161 (248)
Q Consensus 87 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 161 (248)
+|+.|++...-..++.++++|+.|+++.|.|..+ ...++|++|++++|.++..-+..+..+..|+.|++++|.++
T Consensus 275 ~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 275 NLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred ecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 4444444444444445555555555555555433 33445555666665555333445555555666666666555
Q ss_pred CCCcccccCCCCCcEEEecCcccCcch---hhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCC
Q 044005 162 GVIAPSIGSLSNLKGLYLYSNRLSRSI---RAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYE 238 (248)
Q Consensus 162 ~~~~~~~~~l~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 238 (248)
......|..+.+|+.|+++.|.+++.+ ...+.++++|+.|.+.+|++......++..++.|++|++.+|.+...-|+
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 433344555677778888888776532 23566788888888888888855567788889999999999988766666
Q ss_pred CCCCC
Q 044005 239 HIPEP 243 (248)
Q Consensus 239 ~i~~l 243 (248)
.|..+
T Consensus 435 AFe~m 439 (873)
T KOG4194|consen 435 AFEPM 439 (873)
T ss_pred ccccc
Confidence 66554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=2.5e-19 Score=155.11 Aligned_cols=200 Identities=17% Similarity=0.168 Sum_probs=110.0
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC-CCCc-------CCCCCcccccCCccccCCC
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP-PISS-------SLGNNRLSGVIPPEIGLLT 105 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~-~~~~-------~L~~~~~~~~~~~~~~~l~ 105 (248)
++|+.|+|..|.|+......+. .++. |+.||||.|.|+.+.. .+|. +|+.|+|+......|..+.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~-~l~a------lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln 197 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELS-ALPA------LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN 197 (873)
T ss_pred cceeEEeeeccccccccHHHHH-hHhh------hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc
Confidence 3566666666666654445555 5666 6666666665533222 1221 5555555555555555555
Q ss_pred CCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEec
Q 044005 106 HLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLY 180 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 180 (248)
+|-.|.++.|+++.+ +.++.|+.|++.+|.|.-.---.|.++++|+.|.+..|++.......|..+..+++|++.
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 555555665555544 445555555555555541111234455555555555555543333344455566666666
Q ss_pred CcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCC
Q 044005 181 SNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHI 240 (248)
Q Consensus 181 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i 240 (248)
.|++...-..++.++.+|+.|+++.|.|...-++.+.-+++|++|++++|.++.--++++
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 666654444455666666666666666665555666666666666666666653333333
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=2e-20 Score=139.42 Aligned_cols=179 Identities=25% Similarity=0.389 Sum_probs=152.5
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEE
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLH 111 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~ 111 (248)
.+.+++.|-+++|+++ .+|+.++ .+.+ |++|++++|++ ..+|..+..+++|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia-~l~n------levln~~nnqi-----------------e~lp~~issl~klr~ln 85 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIA-ELKN------LEVLNLSNNQI-----------------EELPTSISSLPKLRILN 85 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHH-Hhhh------hhhhhcccchh-----------------hhcChhhhhchhhhhee
Confidence 4568999999999998 6788899 8999 99999999998 57899999999999999
Q ss_pred ccCCccCCC----CCCCCccEEEcCCCccCC-CCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCc
Q 044005 112 IDMNKLHGS----ENLKFLSTVDLSKNKFSS-SMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSR 186 (248)
Q Consensus 112 l~~n~l~~~----~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 186 (248)
++.|++..+ +.++.|+.||+++|.+.. .+|..|..++.|+.|.++.|.++ .+|+.++++++|+.|.+.+|.+.
T Consensus 86 vgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll- 163 (264)
T KOG0617|consen 86 VGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL- 163 (264)
T ss_pred cchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-
Confidence 999988544 889999999999999863 47888888999999999999999 78999999999999999999985
Q ss_pred chhhhhcCCCCCCEEEccCCccCccccccccCCC---CCcEEeccCCCCCCCCCC
Q 044005 187 SIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFT---SLNRVHLEQNHLNGNTYE 238 (248)
Q Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---~L~~L~l~~n~~~~~~~~ 238 (248)
.+|..++.+..|++|++.+|+++ .+|+.++.+. +=+...++.|.+...+.+
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 68999999999999999999999 7787776642 223445566666544443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=1.2e-19 Score=158.50 Aligned_cols=205 Identities=23% Similarity=0.345 Sum_probs=143.7
Q ss_pred CCcEEEEeeCCCcccc-ccCcchhHHHHHHHhhh-----------------ceeEEEeccccccccCCCCCc--------
Q 044005 33 AKRVISINLNTIGLKV-RFTNSHSHQFLILHILI-----------------KASIYYLASYRLKLATPPISS-------- 86 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~-~~~~~~~~~l~~L~~l~-----------------~L~~L~ls~n~~~~~~~~~~~-------- 86 (248)
+++|+.++++.|.+.. -+|+.+. .|..|+.|+ ++-+|+||+|+| ..+|.
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I----etIPn~lfinLtD 151 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI----ETIPNSLFINLTD 151 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc----ccCCchHHHhhHh
Confidence 3455666666665532 3455555 555511111 355566666665 23332
Q ss_pred ----CCCCCcccccCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccC-CCCchhhcCCCCcceEEee
Q 044005 87 ----SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFS-SSMPNSLRKVKPLLSLGFA 156 (248)
Q Consensus 87 ----~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~ 156 (248)
+|++|++. .+|+.+.++.+|++|.+++|.+..+ ..++.|++|.+++.+-+ ..+|..+..+.+|+.++++
T Consensus 152 LLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 152 LLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred Hhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 77777776 5777888888888888888877655 45556677777765432 3577788888888889999
Q ss_pred CCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC-CC
Q 044005 157 LNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN-GN 235 (248)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~ 235 (248)
.|.+. .+|+++.++.+|..|++++|+|+. +......+.+|++|+++.|+++ .+|..+.++++|+.|.+..|+++ ..
T Consensus 231 ~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 231 ENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred ccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence 88888 788888888899999999998863 4444556677888888888888 78888888888888888888876 36
Q ss_pred CCCCCCCCCCC
Q 044005 236 TYEHIPEPNFH 246 (248)
Q Consensus 236 ~~~~i~~l~~l 246 (248)
+|..||.+..|
T Consensus 308 iPSGIGKL~~L 318 (1255)
T KOG0444|consen 308 IPSGIGKLIQL 318 (1255)
T ss_pred Cccchhhhhhh
Confidence 67777776543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.71 E-value=1.2e-18 Score=152.36 Aligned_cols=142 Identities=25% Similarity=0.403 Sum_probs=127.0
Q ss_pred CCCCCcccccCCccccCCCCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCC
Q 044005 87 SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSG 162 (248)
Q Consensus 87 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 162 (248)
+++.|.+. .+|+++-.+++|+.|++++|+|+.+ ....+|++|++++|.++ .+|..+++++.|+.|.+.+|.+.-
T Consensus 228 DlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 228 DLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred cccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc
Confidence 77778777 6899999999999999999999887 44568999999999998 899999999999999999998863
Q ss_pred -CCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCC
Q 044005 163 -VIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHL 232 (248)
Q Consensus 163 -~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 232 (248)
-+|..++++.+|+.+...+|.+ ..+|..+.+|.+|+.|.|+.|.+. .+|..+.-++.|+.||+..|.-
T Consensus 306 eGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 3688999999999999999998 478999999999999999999988 7899998899999999999854
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=1.6e-18 Score=144.23 Aligned_cols=110 Identities=27% Similarity=0.445 Sum_probs=93.2
Q ss_pred CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCE
Q 044005 121 ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTE 200 (248)
Q Consensus 121 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 200 (248)
+.+++|..|++++|-+. .+|..++.+..||.|+++.|++. ..|..+..+..++++-.+.|++....+..+..+.+|.+
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 56778888888888776 77877778888888888888887 67777777777888878888886666666888999999
Q ss_pred EEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 201 LEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 201 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
|++.+|.+. .+|+.++++.+|++|++++|.|.
T Consensus 510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999998 88999999999999999999996
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=5e-18 Score=141.35 Aligned_cols=205 Identities=21% Similarity=0.276 Sum_probs=140.8
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhh-----------------ceeEEEeccccccccCCCCCc-------CC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILI-----------------KASIYYLASYRLKLATPPISS-------SL 88 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~-----------------~L~~L~ls~n~~~~~~~~~~~-------~L 88 (248)
...++.|++++|.+. ..|++++ .+..+..+. +++.++.++|+++.....+.. +.
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig-~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIG-ELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHH-HHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 346889999999887 6788888 788844443 455555555555221111111 33
Q ss_pred CCCcccccCCccccCCCCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCC
Q 044005 89 GNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVI 164 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 164 (248)
.+|++. ..|+.+..+.+|..+++.+|+++.. -.++.|++++...|-++ .+|+.++.+.+|.-|++..|++. .+
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence 344444 3455555555666666666666554 23566777777777776 67777778888888888888877 45
Q ss_pred cccccCCCCCcEEEecCcccCcchh-hhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCC
Q 044005 165 APSIGSLSNLKGLYLYSNRLSRSIR-AKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEP 243 (248)
Q Consensus 165 ~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l 243 (248)
| .|..+..|..++++.|+|. .+| ....++.++.+|++.+|+++ +.|..+..+.+|.+||+++|.++ ..|.++|++
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 5 6677777888888888774 344 44557888889999999988 77888888888999999999987 778888887
Q ss_pred CCCC
Q 044005 244 NFHR 247 (248)
Q Consensus 244 ~~l~ 247 (248)
+|+
T Consensus 298 -hL~ 300 (565)
T KOG0472|consen 298 -HLK 300 (565)
T ss_pred -eee
Confidence 554
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=2.9e-18 Score=127.97 Aligned_cols=159 Identities=23% Similarity=0.419 Sum_probs=143.4
Q ss_pred eeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCch
Q 044005 67 ASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPN 142 (248)
Q Consensus 67 L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~ 142 (248)
++.|-||+|.+ ..+|+.+..+.+|+.|++.+|+++.+ +.++.|+.|++.-|++. ..|.
T Consensus 35 ITrLtLSHNKl-----------------~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lpr 96 (264)
T KOG0617|consen 35 ITRLTLSHNKL-----------------TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPR 96 (264)
T ss_pred hhhhhcccCce-----------------eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCcc
Confidence 88899999998 46789999999999999999999877 78899999999999988 8899
Q ss_pred hhcCCCCcceEEeeCCcCC-CCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCC
Q 044005 143 SLRKVKPLLSLGFALNYLS-GVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTS 221 (248)
Q Consensus 143 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 221 (248)
.|+.++.|+.|++..|.+. ..+|..|..+..|..|.+++|.+. .+|..++.+.+|+.|.+.+|.+. .+|..++.+..
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 9999999999999999886 467888888999999999999994 78888999999999999999998 79999999999
Q ss_pred CcEEeccCCCCCCCCCCCCCCCCCC
Q 044005 222 LNRVHLEQNHLNGNTYEHIPEPNFH 246 (248)
Q Consensus 222 L~~L~l~~n~~~~~~~~~i~~l~~l 246 (248)
|++|.+.+|+++ .+|..++.+..+
T Consensus 175 lrelhiqgnrl~-vlppel~~l~l~ 198 (264)
T KOG0617|consen 175 LRELHIQGNRLT-VLPPELANLDLV 198 (264)
T ss_pred HHHHhcccceee-ecChhhhhhhhh
Confidence 999999999997 778888776543
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=1.7e-14 Score=132.77 Aligned_cols=122 Identities=27% Similarity=0.285 Sum_probs=79.1
Q ss_pred CCcEEEccCCccCCCC-CCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCccc
Q 044005 106 HLKHLHIDMNKLHGSE-NLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRL 184 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 184 (248)
+|++|++++|+++.+. ...+|+.|++++|.+. .+|.. ..+|+.|++++|.++. +|.. ..+|+.|++++|++
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~L 414 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRL 414 (788)
T ss_pred ccceEecCCCccCCCCCCCcccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcC
Confidence 4555555555554441 2233555555555554 33332 2457777777777763 4432 35678888888887
Q ss_pred CcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCC
Q 044005 185 SRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHI 240 (248)
Q Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i 240 (248)
.. +|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+
T Consensus 415 ss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 415 TS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 63 4532 245778888888888 688888889999999999999987766654
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=5.8e-15 Score=133.96 Aligned_cols=106 Identities=29% Similarity=0.375 Sum_probs=50.7
Q ss_pred CCCCccEEEcCCCccCCCCch-hhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCE
Q 044005 122 NLKFLSTVDLSKNKFSSSMPN-SLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTE 200 (248)
Q Consensus 122 ~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 200 (248)
.+..|+.|++++|.+. .+|. .+.++..|++|++++|.+. .+|..+..+..|++|...+|++. .+| .+..++.|+.
T Consensus 381 ~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 3445555555555554 3332 3444555555555555555 34455555555555555555553 344 3444555555
Q ss_pred EEccCCccCccccccccCCCCCcEEeccCCC
Q 044005 201 LEMDNNKLFGQIPKSLRNFTSLNRVHLEQNH 231 (248)
Q Consensus 201 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 231 (248)
+|++.|.++..........++|++||+++|.
T Consensus 457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred EecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 5555555543211111112455555555554
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.52 E-value=1.6e-13 Score=133.65 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=71.5
Q ss_pred CccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEcc
Q 044005 125 FLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMD 204 (248)
Q Consensus 125 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 204 (248)
+|++|++++|.....+|..++.+++|+.|++++|.....+|..+ .+++|+.|++++|.....+|.. ..+|++|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 45556666555444566666666666666666654333444443 4566666666665433333322 2467777888
Q ss_pred CCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCC
Q 044005 205 NNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFH 246 (248)
Q Consensus 205 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l 246 (248)
+|.++ .+|..+..+++|+.|++++|.-...+|..++.++.|
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCC
Confidence 77777 677778888888888888754434566666655554
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=4.2e-14 Score=130.60 Aligned_cols=174 Identities=20% Similarity=0.301 Sum_probs=81.8
Q ss_pred cEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-----CCCCCcccccCCccccCCCCCcE
Q 044005 35 RVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS-----SLGNNRLSGVIPPEIGLLTHLKH 109 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~-----~L~~~~~~~~~~~~~~~l~~L~~ 109 (248)
.++.|++++|.+. .+|..+. .+ |++|++++|.++.+...++. ++++|.+. .+|..+. .+|+.
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~---~n------L~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~ 266 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ---GN------IKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELPERLP--SALQS 266 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc---cC------CCEEECCCCccccCChhhhccccEEECcCCccC-cCChhHh--CCCCE
Confidence 4555666666555 3343332 23 66667776666333222222 55666665 3444432 35667
Q ss_pred EEccCCccCCCC--CCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcc
Q 044005 110 LHIDMNKLHGSE--NLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRS 187 (248)
Q Consensus 110 L~l~~n~l~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~ 187 (248)
|++++|+++.+. -...|++|++++|.++ .+|..+. .+|+.|++++|.++. +|..+ .++|+.|++++|.+++
T Consensus 267 L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 267 LDLFHNKISCLPENLPEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS- 339 (754)
T ss_pred EECcCCccCccccccCCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-
Confidence 777776666551 2235677777776665 3443221 234444455444442 22211 1344444444444432
Q ss_pred hhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 188 IRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
+|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|.++
T Consensus 340 LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 340 LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 23222 134445555554444 2333221 34444444444443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=2.1e-15 Score=125.56 Aligned_cols=205 Identities=19% Similarity=0.229 Sum_probs=125.1
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc---------CCCCCcccccCCccccCC
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS---------SLGNNRLSGVIPPEIGLL 104 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~---------~L~~~~~~~~~~~~~~~l 104 (248)
...++|+|..|+|+..-+.+|. .+++ |+.||||+|.|+.+....-. ..++|.|+......|..+
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~-~l~~------LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFK-TLHR------LRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CcceEEEeccCCcccCChhhcc-chhh------hceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 4789999999999966667788 9999 99999999999443322111 566677775555566666
Q ss_pred CCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCch-hhcCCCCcceEEeeCCcCC-----------------
Q 044005 105 THLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPN-SLRKVKPLLSLGFALNYLS----------------- 161 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~----------------- 161 (248)
.+|+.|.+.-|++..+ ..++++..|.+.+|.+. .++. .+..+..++.+.+..|.+-
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 6666666666655444 34555555555555554 2222 3344444444444433310
Q ss_pred --------------------------------------------CC-CcccccCCCCCcEEEecCcccCcchhhhhcCCC
Q 044005 162 --------------------------------------------GV-IAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLM 196 (248)
Q Consensus 162 --------------------------------------------~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 196 (248)
.. ....|..+++|+.+++++|+|++.-+.+|.+..
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 00 112345556677777777777665566666666
Q ss_pred CCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCC
Q 044005 197 QLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFH 246 (248)
Q Consensus 197 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l 246 (248)
.+++|.|..|++...-...|..+..|+.|++++|+|+...|..|..+.++
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 67777777776654444556666677777777777766656555555444
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=1.3e-14 Score=122.32 Aligned_cols=138 Identities=22% Similarity=0.286 Sum_probs=95.3
Q ss_pred ccccCC-CCCcEEEccCCccCCC---------CCCCCccEEEcCCCccCCC----CchhhcCCCCcceEEeeCCcCCCC-
Q 044005 99 PEIGLL-THLKHLHIDMNKLHGS---------ENLKFLSTVDLSKNKFSSS----MPNSLRKVKPLLSLGFALNYLSGV- 163 (248)
Q Consensus 99 ~~~~~l-~~L~~L~l~~n~l~~~---------~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~- 163 (248)
..+..+ ++|+.|++++|.+++. ..+..|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 345566 7888888888888732 4556788888888887632 233445566888888888887633
Q ss_pred ---CcccccCCCCCcEEEecCcccCcchhhhhc-----CCCCCCEEEccCCccCc----cccccccCCCCCcEEeccCCC
Q 044005 164 ---IAPSIGSLSNLKGLYLYSNRLSRSIRAKIG-----NLMQLTELEMDNNKLFG----QIPKSLRNFTSLNRVHLEQNH 231 (248)
Q Consensus 164 ---~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~ 231 (248)
++..+..+++|++|++++|.+.+.....+. ....|++|++++|.+++ .+...+..+++|+++++++|.
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 234456678888999988888653222221 23688889998888863 234455667888999999998
Q ss_pred CCCCC
Q 044005 232 LNGNT 236 (248)
Q Consensus 232 ~~~~~ 236 (248)
+.++.
T Consensus 290 l~~~~ 294 (319)
T cd00116 290 FGEEG 294 (319)
T ss_pred CcHHH
Confidence 87653
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=4.6e-13 Score=130.37 Aligned_cols=197 Identities=18% Similarity=0.149 Sum_probs=96.3
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc----------CCCCCcccccCCccccC
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS----------SLGNNRLSGVIPPEIGL 103 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~----------~L~~~~~~~~~~~~~~~ 103 (248)
.+|+.|+++++.+. .++..+. .+++ |+.|+|+++.. .+.+|. ++.+|.....+|..+..
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~-~l~~------Lk~L~Ls~~~~---l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVH-SLTG------LRNIDLRGSKN---LKEIPDLSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred cCCcEEECcCcccc-ccccccc-cCCC------CCEEECCCCCC---cCcCCccccCCcccEEEecCCCCccccchhhhc
Confidence 36777777777664 3444444 4555 66666666543 233332 44555444456666666
Q ss_pred CCCCcEEEccCCc-cCCC---CCCCCccEEEcCCCccCCC--------------------Cchhh---------------
Q 044005 104 LTHLKHLHIDMNK-LHGS---ENLKFLSTVDLSKNKFSSS--------------------MPNSL--------------- 144 (248)
Q Consensus 104 l~~L~~L~l~~n~-l~~~---~~~~~L~~L~ls~n~l~~~--------------------~~~~~--------------- 144 (248)
+++|+.|++++|. ++.+ ..+++|++|++++|..... +|..+
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKS 759 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccch
Confidence 6666666666652 2222 2344455555554432222 22211
Q ss_pred ---------------cCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccC
Q 044005 145 ---------------RKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLF 209 (248)
Q Consensus 145 ---------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (248)
...++|++|++++|.....+|..++++++|+.|++.+|...+.+|... .+++|+.|++++|...
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence 001234444444444333444445555555555555543323333322 3445555555554322
Q ss_pred ccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCC
Q 044005 210 GQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFH 246 (248)
Q Consensus 210 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l 246 (248)
..+|.. ..+|++|++++|.++ ++|..++.+..|
T Consensus 839 ~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L 871 (1153)
T PLN03210 839 RTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNL 871 (1153)
T ss_pred cccccc---ccccCEeECCCCCCc-cChHHHhcCCCC
Confidence 222221 246667777777775 667666555544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=4.3e-14 Score=130.53 Aligned_cols=179 Identities=18% Similarity=0.263 Sum_probs=105.1
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-----CCCCCcccccCCccccCCCCCc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS-----SLGNNRLSGVIPPEIGLLTHLK 108 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~-----~L~~~~~~~~~~~~~~~l~~L~ 108 (248)
.+|+.|++++|.+. .+|..+. .. |+.|+|++|.+..+...++. +++.|.+. .+|..+. ++|+
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~---~~------L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~ 286 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP---DT------IQEMELSINRITELPERLPSALQSLDLFHNKIS-CLPENLP--EELR 286 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh---cc------ccEEECcCCccCcCChhHhCCCCEEECcCCccC-ccccccC--CCCc
Confidence 47899999999887 4565444 45 78888888887333222222 67777776 4565443 4788
Q ss_pred EEEccCCccCCCC--CCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCc
Q 044005 109 HLHIDMNKLHGSE--NLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSR 186 (248)
Q Consensus 109 ~L~l~~n~l~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 186 (248)
+|++++|+++.+. ....|++|++++|.++ .+|..+ .++|++|++++|.++. +|..+. ++|+.|++++|++.
T Consensus 287 ~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~- 359 (754)
T PRK15370 287 YLSVYDNSIRTLPAHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT- 359 (754)
T ss_pred EEECCCCccccCcccchhhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-
Confidence 8888888887662 1234666777777666 344332 2456666666666653 343332 46666666666664
Q ss_pred chhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCC
Q 044005 187 SIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYE 238 (248)
Q Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 238 (248)
.+|..+ .++|++|++++|.++ .+|..+. ..|+.|++++|.+. .+|+
T Consensus 360 ~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 360 VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPE 405 (754)
T ss_pred cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCch
Confidence 234333 245666666666665 3443332 24555555555554 4444
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=3.7e-15 Score=135.20 Aligned_cols=196 Identities=24% Similarity=0.291 Sum_probs=155.1
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-------CCCCCcccccCCccccCCC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS-------SLGNNRLSGVIPPEIGLLT 105 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~-------~L~~~~~~~~~~~~~~~l~ 105 (248)
..++++++++.+.+. .+|..++ .+.+ |+.++..+|+++.....+.. ....|.++ .+|+...+++
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~-~~~n------le~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~ 310 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIG-ACAN------LEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLK 310 (1081)
T ss_pred cccceeeecchhhhh-cchHHHH-hccc------ceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccc
Confidence 347788888888876 3456666 6777 88888888887222111111 66667776 6788888899
Q ss_pred CCcEEEccCCccCCC------------------------------CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEe
Q 044005 106 HLKHLHIDMNKLHGS------------------------------ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGF 155 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~------------------------------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l 155 (248)
+|++|++..|++..+ ..++.|+.|++.+|.++...-+.+.++++|+.|++
T Consensus 311 sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 311 SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 999999999988665 23456889999999998777778889999999999
Q ss_pred eCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCC-
Q 044005 156 ALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG- 234 (248)
Q Consensus 156 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~- 234 (248)
++|.+.......+.++..|++|++++|++. .+|..+..+..|++|...+|.+. ..| .+..++.|+.+|++.|.++.
T Consensus 391 syNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 391 SYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 999998666678889999999999999996 67888889999999999999998 667 78899999999999999864
Q ss_pred CCCCCC
Q 044005 235 NTYEHI 240 (248)
Q Consensus 235 ~~~~~i 240 (248)
.+|+..
T Consensus 468 ~l~~~~ 473 (1081)
T KOG0618|consen 468 TLPEAL 473 (1081)
T ss_pred hhhhhC
Confidence 344433
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=4.6e-14 Score=119.03 Aligned_cols=148 Identities=24% Similarity=0.294 Sum_probs=102.5
Q ss_pred CCCCCcccccCCccccCCC---CCcEEEccCCccCCC---------CCC-CCccEEEcCCCccCCC----CchhhcCCCC
Q 044005 87 SLGNNRLSGVIPPEIGLLT---HLKHLHIDMNKLHGS---------ENL-KFLSTVDLSKNKFSSS----MPNSLRKVKP 149 (248)
Q Consensus 87 ~L~~~~~~~~~~~~~~~l~---~L~~L~l~~n~l~~~---------~~~-~~L~~L~ls~n~l~~~----~~~~~~~l~~ 149 (248)
++++|.+....+..+..+. +|++|++++|.+... ..+ ++|++|++++|.+++. ++..+..+.+
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence 4444444433444444444 499999999988732 445 7899999999988733 3345566778
Q ss_pred cceEEeeCCcCCCC----CcccccCCCCCcEEEecCcccCcc----hhhhhcCCCCCCEEEccCCccCcccccccc----
Q 044005 150 LLSLGFALNYLSGV----IAPSIGSLSNLKGLYLYSNRLSRS----IRAKIGNLMQLTELEMDNNKLFGQIPKSLR---- 217 (248)
Q Consensus 150 L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---- 217 (248)
|++|++++|.+.+. ++..+..+++|++|++++|.+.+. +...+..+++|++|++++|.+++.....+.
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246 (319)
T ss_pred cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence 99999999988742 233455667999999999988643 334566778899999999988863222222
Q ss_pred -CCCCCcEEeccCCCCCC
Q 044005 218 -NFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 218 -~l~~L~~L~l~~n~~~~ 234 (248)
..+.|++|++++|.+++
T Consensus 247 ~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 247 SPNISLLTLSLSCNDITD 264 (319)
T ss_pred ccCCCceEEEccCCCCCc
Confidence 24789999999998863
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=6.7e-12 Score=115.86 Aligned_cols=119 Identities=26% Similarity=0.267 Sum_probs=57.1
Q ss_pred CCcEEEccCCccCCC-CCCCCccEEEcCCCccCCCCchhhcC-----------------CCCcceEEeeCCcCCCCCccc
Q 044005 106 HLKHLHIDMNKLHGS-ENLKFLSTVDLSKNKFSSSMPNSLRK-----------------VKPLLSLGFALNYLSGVIAPS 167 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~-----------------l~~L~~L~l~~n~l~~~~~~~ 167 (248)
+|+.|++++|+++.+ ...++|++|++++|.+. .+|..... ..+|++|++++|.++. +|..
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l 360 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTL 360 (788)
T ss_pred hcCEEECcCCccccccccccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCCccCC-CCCC
Confidence 455555555555554 22345666666666665 23321100 0134444444444442 2221
Q ss_pred ccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCC
Q 044005 168 IGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYE 238 (248)
Q Consensus 168 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 238 (248)
..+|+.|++++|.+.. +|.. ..+|+.|++++|.++ .+|.. .++|+.|++++|.++ .+|.
T Consensus 361 ---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~ 419 (788)
T PRK15387 361 ---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPM 419 (788)
T ss_pred ---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCc
Confidence 1234444444444432 2321 235677777777776 34432 245666666666665 3443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=1.5e-13 Score=114.65 Aligned_cols=194 Identities=18% Similarity=0.229 Sum_probs=131.7
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEE-EeccccccccCCCCCc--------CCCCCcccccCCccccC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIY-YLASYRLKLATPPISS--------SLGNNRLSGVIPPEIGL 103 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L-~ls~n~~~~~~~~~~~--------~L~~~~~~~~~~~~~~~ 103 (248)
..+|+.|||+.|.|+...|++|. .++. +..| ++++|+|+.+....-. .+.-|.+.....+.+..
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~-GL~~------l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFK-GLAS------LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred hhhhceecccccchhhcChHhhh-hhHh------hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence 45899999999999988899998 8877 5443 4455777322111111 33333444333444444
Q ss_pred CCCCcEEEccCCccCCC-----CCCCCccEEEcC----------------------------------------------
Q 044005 104 LTHLKHLHIDMNKLHGS-----ENLKFLSTVDLS---------------------------------------------- 132 (248)
Q Consensus 104 l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls---------------------------------------------- 132 (248)
+++|..|.+.+|.+..+ ..+..++++.+.
T Consensus 163 L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~ 242 (498)
T KOG4237|consen 163 LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR 242 (498)
T ss_pred hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchh
Confidence 44444444444444222 111112222211
Q ss_pred ---------------CCccCCCCc-hhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCC
Q 044005 133 ---------------KNKFSSSMP-NSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLM 196 (248)
Q Consensus 133 ---------------~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 196 (248)
.+......| ..|.++++|++|++++|.++.+.+.+|.....++.|.+..|++...-...|.++.
T Consensus 243 kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls 322 (498)
T KOG4237|consen 243 KFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLS 322 (498)
T ss_pred hhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccc
Confidence 121222334 4578899999999999999988788899999999999999999654456788999
Q ss_pred CCCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 197 QLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 197 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
.|++|+|.+|+|+-..|.+|..+..|..|.+-.|.+-
T Consensus 323 ~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 323 GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999999999999888888989999999999888773
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.4e-13 Score=119.43 Aligned_cols=174 Identities=22% Similarity=0.318 Sum_probs=141.3
Q ss_pred cEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccC
Q 044005 35 RVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDM 114 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 114 (248)
-.+..|++.|++. ++|..++ .|-. |+.+.|+.|.+ ..+|.++..+..|.+++++.
T Consensus 76 dt~~aDlsrNR~~-elp~~~~-~f~~------Le~liLy~n~~-----------------r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEAC-AFVS------LESLILYHNCI-----------------RTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred chhhhhccccccc-cCchHHH-HHHH------HHHHHHHhccc-----------------eecchhhhhhhHHHHhhhcc
Confidence 3456777777776 6777777 7777 77777777776 46788999999999999999
Q ss_pred CccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhh
Q 044005 115 NKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAK 191 (248)
Q Consensus 115 n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 191 (248)
|++..+ -..--|+.|.+++|++. .+|..++..+.|..|+.+.|.+. .+|..+..+.+|..|.+..|++. .+|..
T Consensus 131 NqlS~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~E 207 (722)
T KOG0532|consen 131 NQLSHLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEE 207 (722)
T ss_pred chhhcCChhhhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHH
Confidence 999777 22234899999999988 78888888889999999999988 67778888999999999999985 46666
Q ss_pred hcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCC
Q 044005 192 IGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEH 239 (248)
Q Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 239 (248)
+..+ .|.+|+++.|+++ .+|-.|.++..|++|-|++|.+. ..|..
T Consensus 208 l~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAq 252 (722)
T KOG0532|consen 208 LCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQ 252 (722)
T ss_pred HhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHH
Confidence 6644 5899999999999 88999999999999999999996 44443
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.27 E-value=1.7e-11 Score=112.36 Aligned_cols=125 Identities=26% Similarity=0.321 Sum_probs=97.1
Q ss_pred CCcccCCCC---CccceeeeCCC-----CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCC
Q 044005 14 SLWNLYPIN---ATNFGIHCNSA-----KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPIS 85 (248)
Q Consensus 14 ~~w~~~~~~---~~~~~~~c~~~-----~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~ 85 (248)
.+|..+++. |.|.|+.|... ..++.|+|+++.+.+.+|..++ .++. |+.|+|++|.+ .
T Consensus 390 ~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~-~L~~------L~~L~Ls~N~l---~---- 455 (623)
T PLN03150 390 FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS-KLRH------LQSINLSGNSI---R---- 455 (623)
T ss_pred CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh-CCCC------CCEEECCCCcc---c----
Confidence 379743332 37999999521 2489999999999999999888 8888 99999999988 3
Q ss_pred cCCCCCcccccCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCC-CCcceEEeeCCc
Q 044005 86 SSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKV-KPLLSLGFALNY 159 (248)
Q Consensus 86 ~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~ 159 (248)
+.+|..+..+++|+.|++++|.+++. ..+++|++|++++|.+++.+|..+... .++..+++.+|.
T Consensus 456 ---------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 456 ---------GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ---------CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 35677888899999999988888754 667788888888888887888776543 456677777775
Q ss_pred CC
Q 044005 160 LS 161 (248)
Q Consensus 160 l~ 161 (248)
..
T Consensus 527 ~l 528 (623)
T PLN03150 527 GL 528 (623)
T ss_pred cc
Confidence 43
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=9.9e-12 Score=108.16 Aligned_cols=176 Identities=27% Similarity=0.389 Sum_probs=130.8
Q ss_pred CcEEEEeeCCCccccccCcchhHHHH-HHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFL-ILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHI 112 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~-~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 112 (248)
+.++.|++.++.+. .++.... .+. + |+.|++++|.+ ..+|..+..+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~-~~~~n------L~~L~l~~N~i-----------------~~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIG-LLKSN------LKELDLSDNKI-----------------ESLPSPLRNLPNLKNLDL 170 (394)
T ss_pred cceeEEecCCcccc-cCccccc-cchhh------cccccccccch-----------------hhhhhhhhcccccccccc
Confidence 34666666666665 3344444 342 5 66666666666 244567788999999999
Q ss_pred cCCccCCC---C-CCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcch
Q 044005 113 DMNKLHGS---E-NLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSI 188 (248)
Q Consensus 113 ~~n~l~~~---~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 188 (248)
+.|+++.+ . ..+.|+.|++++|.+. .+|..+.....|+++.+++|.+. ..+..+..+.++..+.+..|++. .+
T Consensus 171 ~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 171 SFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred CCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 99999877 2 6788999999999988 77766555667999999988644 34566778888888888888874 33
Q ss_pred hhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCC
Q 044005 189 RAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEH 239 (248)
Q Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 239 (248)
+..++.+.++++|++++|.++ .++. ++.+.+++.+++++|.+....+..
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 677788888999999999998 4444 788999999999999887655544
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.21 E-value=5.6e-11 Score=108.94 Aligned_cols=112 Identities=26% Similarity=0.396 Sum_probs=97.5
Q ss_pred ccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccC
Q 044005 126 LSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDN 205 (248)
Q Consensus 126 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 205 (248)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77899999999888998999999999999999999888888899999999999999999888999899999999999999
Q ss_pred CccCccccccccCC-CCCcEEeccCCCCCCCCC
Q 044005 206 NKLFGQIPKSLRNF-TSLNRVHLEQNHLNGNTY 237 (248)
Q Consensus 206 n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~ 237 (248)
|.+++.+|..+... .++..+++.+|......|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99998888887653 567788899887655444
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.7e-11 Score=94.00 Aligned_cols=122 Identities=24% Similarity=0.327 Sum_probs=41.1
Q ss_pred CCCCCcEEEccCCccCCC---C-CCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccc-cCCCCCcEE
Q 044005 103 LLTHLKHLHIDMNKLHGS---E-NLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSI-GSLSNLKGL 177 (248)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~---~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L 177 (248)
+..++++|++++|.|+.+ . .+..|+.|++++|.|+ .+. .+..++.|++|++++|.++. +.+.+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 344567777777777655 2 3456777777777776 333 45567777777777777774 33333 346777777
Q ss_pred EecCcccCcc-hhhhhcCCCCCCEEEccCCccCccc---cccccCCCCCcEEec
Q 044005 178 YLYSNRLSRS-IRAKIGNLMQLTELEMDNNKLFGQI---PKSLRNFTSLNRVHL 227 (248)
Q Consensus 178 ~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~l 227 (248)
.+++|+|... ....+..+++|+.|++.+|++.... ...+..+|+|+.||-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777777432 1245566777777777777776421 122456777777764
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=2.1e-11 Score=100.38 Aligned_cols=164 Identities=20% Similarity=0.223 Sum_probs=105.6
Q ss_pred ceeEEEeccccccccCCCCCc---------------CCCCCccccc-------------CCccccCCCCCcEEEccCCcc
Q 044005 66 KASIYYLASYRLKLATPPISS---------------SLGNNRLSGV-------------IPPEIGLLTHLKHLHIDMNKL 117 (248)
Q Consensus 66 ~L~~L~ls~n~~~~~~~~~~~---------------~L~~~~~~~~-------------~~~~~~~l~~L~~L~l~~n~l 117 (248)
.|++||||.|-| ....+. .|.+|.+... ..+....-++|+++....|++
T Consensus 93 ~L~~ldLSDNA~---G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 93 KLQKLDLSDNAF---GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred ceeEeecccccc---CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 677777777776 332222 5566655521 122234456788888888877
Q ss_pred CCC---------CCCCCccEEEcCCCccCCC----CchhhcCCCCcceEEeeCCcCCCC----CcccccCCCCCcEEEec
Q 044005 118 HGS---------ENLKFLSTVDLSKNKFSSS----MPNSLRKVKPLLSLGFALNYLSGV----IAPSIGSLSNLKGLYLY 180 (248)
Q Consensus 118 ~~~---------~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~ 180 (248)
... +..+.|+.+.++.|.|... +...+..+++|+.|++..|.++.. +...+..+++|+.++++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 544 4557788888888877532 224556778888888888877632 34566677788888888
Q ss_pred CcccCcc----hhhhh-cCCCCCCEEEccCCccCcc----ccccccCCCCCcEEeccCCCC
Q 044005 181 SNRLSRS----IRAKI-GNLMQLTELEMDNNKLFGQ----IPKSLRNFTSLNRVHLEQNHL 232 (248)
Q Consensus 181 ~n~i~~~----~~~~~-~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~ 232 (248)
+|.+... +...+ ...++|+.|.+.+|.++.. +...+...+.|.+|++++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8877532 22222 2357788888888887742 233345578888888888888
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.1e-11 Score=104.67 Aligned_cols=181 Identities=20% Similarity=0.180 Sum_probs=116.5
Q ss_pred CCcEEEEeeCCCcccc-ccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEE
Q 044005 33 AKRVISINLNTIGLKV-RFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLH 111 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~-~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~ 111 (248)
+++++.|||+.|-+.. .....++++|++ |+.|+|+.|+++...+. ..-..+++|+.|.
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~------Le~LNls~Nrl~~~~~s---------------~~~~~l~~lK~L~ 203 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPS------LENLNLSSNRLSNFISS---------------NTTLLLSHLKQLV 203 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhccc------chhcccccccccCCccc---------------cchhhhhhhheEE
Confidence 4578888888887753 112233335555 88888888887211111 0112567788888
Q ss_pred ccCCccCCC------CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCC-CcccccCCCCCcEEEecCccc
Q 044005 112 IDMNKLHGS------ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV-IAPSIGSLSNLKGLYLYSNRL 184 (248)
Q Consensus 112 l~~n~l~~~------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i 184 (248)
++.|.++.- ..+|.|+.|++.+|............++.|++|++++|.+... .....+.++.|..|+++.+.+
T Consensus 204 l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 204 LNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred eccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCc
Confidence 888888754 6788888888888852212223334467788888888887632 124566778888888888877
Q ss_pred Ccc-hhhh-----hcCCCCCCEEEccCCccCc-cccccccCCCCCcEEeccCCCCCC
Q 044005 185 SRS-IRAK-----IGNLMQLTELEMDNNKLFG-QIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 185 ~~~-~~~~-----~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
.+. .|.. ....++|++|++..|++.+ .-...+..+++|+.+.+..|++..
T Consensus 284 ~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 284 ASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 532 2221 2346788888888888863 122345567788888888888764
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=9.9e-12 Score=100.82 Aligned_cols=124 Identities=25% Similarity=0.284 Sum_probs=83.0
Q ss_pred eeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchh
Q 044005 67 ASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNS 143 (248)
Q Consensus 67 L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~ 143 (248)
|+.+|||+|.| ..+.+++.-.|.++.|++++|.+..+ ..+++|++||+++|.++ .+...
T Consensus 286 LtelDLS~N~I-----------------~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gw 347 (490)
T KOG1259|consen 286 LTELDLSGNLI-----------------TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGW 347 (490)
T ss_pred hhhccccccch-----------------hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhh
Confidence 66677777766 24455566667777777777777655 45667777888777766 33333
Q ss_pred hcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcc-hhhhhcCCCCCCEEEccCCccCc
Q 044005 144 LRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRS-IRAKIGNLMQLTELEMDNNKLFG 210 (248)
Q Consensus 144 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~ 210 (248)
=.++.++++|.+++|.+... ..++++.+|..|++.+|+|... -...++.++.|+++.|.+|++.+
T Consensus 348 h~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred HhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 34566777777777777633 4566777777788888777432 23456777777777777777763
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=9.6e-11 Score=89.85 Aligned_cols=109 Identities=28% Similarity=0.313 Sum_probs=43.5
Q ss_pred CCCCccEEEcCCCccCCCCchhhc-CCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCE
Q 044005 122 NLKFLSTVDLSKNKFSSSMPNSLR-KVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTE 200 (248)
Q Consensus 122 ~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 200 (248)
+...+++|++++|.|+ .+. .+. .+.+|+.|++++|.+... +.+..++.|++|++++|+|+.........+++|++
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 4456899999999998 554 344 578999999999999854 46778999999999999997543322346899999
Q ss_pred EEccCCccCc-cccccccCCCCCcEEeccCCCCCC
Q 044005 201 LEMDNNKLFG-QIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 201 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
|++++|++.+ .-...++.+++|+.|++.+|.+..
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 9999999985 223567889999999999999974
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=2e-12 Score=112.44 Aligned_cols=145 Identities=26% Similarity=0.357 Sum_probs=127.5
Q ss_pred cCCccccCCCCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCC
Q 044005 96 VIPPEIGLLTHLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSL 171 (248)
Q Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 171 (248)
.+|..+..+-.|+.+.+..|.+..+ ..+..|++++++.|+++ ..|..++.++ |+.|.+++|+++ .+|+.++..
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~ 165 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLL 165 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccc
Confidence 6788888899999999999988665 67788999999999998 7888887766 899999999998 788888988
Q ss_pred CCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 172 SNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 172 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
.+|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..+ .|..||+++|++. .+|-.|..+..|+
T Consensus 166 ~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQ 237 (722)
T ss_pred hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhhe
Confidence 99999999999996 57778889999999999999998 678888855 5999999999998 8899999888875
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=4.6e-10 Score=97.70 Aligned_cols=157 Identities=32% Similarity=0.461 Sum_probs=124.6
Q ss_pred ceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCC-CCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCC
Q 044005 66 KASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLT-HLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSM 140 (248)
Q Consensus 66 ~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~ 140 (248)
.++.|++.+|.+ ..+++....+. +|+.|++++|.+..+ ..++.|+.|++++|++. .+
T Consensus 117 ~l~~L~l~~n~i-----------------~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l 178 (394)
T COG4886 117 NLTSLDLDNNNI-----------------TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DL 178 (394)
T ss_pred ceeEEecCCccc-----------------ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hh
Confidence 377777777766 25666667774 999999999999764 78899999999999998 77
Q ss_pred chhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCC
Q 044005 141 PNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFT 220 (248)
Q Consensus 141 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 220 (248)
+...+..+.|+.|++++|.+. .+|........|+++.+++|.+. ..+..++.+.++..+.+.+|++. ..+..+..++
T Consensus 179 ~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~ 255 (394)
T COG4886 179 PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLS 255 (394)
T ss_pred hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcccc
Confidence 777668899999999999998 56665556677999999999653 45566788888999999999887 4467788899
Q ss_pred CCcEEeccCCCCCCCCCCCCCCCCC
Q 044005 221 SLNRVHLEQNHLNGNTYEHIPEPNF 245 (248)
Q Consensus 221 ~L~~L~l~~n~~~~~~~~~i~~l~~ 245 (248)
+++.|++++|.++ .++. ++.+..
T Consensus 256 ~l~~L~~s~n~i~-~i~~-~~~~~~ 278 (394)
T COG4886 256 NLETLDLSNNQIS-SISS-LGSLTN 278 (394)
T ss_pred ccceecccccccc-cccc-ccccCc
Confidence 9999999999998 4333 555443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.5e-10 Score=94.07 Aligned_cols=124 Identities=22% Similarity=0.269 Sum_probs=84.2
Q ss_pred CCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEec
Q 044005 105 THLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLY 180 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 180 (248)
..|+++|+++|.|+.+ +-.|.++.|++++|.+. .+. .+..+.+|+.|++++|.++. ...+..++.++++|.+.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 4677777888777665 44567778888887776 332 36667778888888777763 33344566777777777
Q ss_pred CcccCcchhhhhcCCCCCCEEEccCCccCc-cccccccCCCCCcEEeccCCCCC
Q 044005 181 SNRLSRSIRAKIGNLMQLTELEMDNNKLFG-QIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 181 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
.|.|.. ...++++-+|..|++++|++.. .-...++++|-|+.+.+.+|.+.
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 777732 2345666677888888887763 12345677888888888888775
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5.3e-11 Score=100.67 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=123.7
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEcc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHID 113 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~ 113 (248)
..|+.+.|.++.............++. ++.||||.|-| ... ..+......+++|+.|+++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~------v~~LdLS~NL~---~nw-----------~~v~~i~eqLp~Le~LNls 180 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPN------VRDLDLSRNLF---HNW-----------FPVLKIAEQLPSLENLNLS 180 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCc------ceeecchhhhH---HhH-----------HHHHHHHHhcccchhcccc
Confidence 356677777766653222112214455 88888888877 211 1233445678999999999
Q ss_pred CCccCCC------CCCCCccEEEcCCCccCCC-CchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCc
Q 044005 114 MNKLHGS------ENLKFLSTVDLSKNKFSSS-MPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSR 186 (248)
Q Consensus 114 ~n~l~~~------~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 186 (248)
.|++... ..++.|+.|.++.|.++.. +...+..+++|..|++.+|..-.........++.|+.|++++|++..
T Consensus 181 ~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 181 SNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred cccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence 9988655 4567899999999998743 23345568999999999995322222333456889999999998854
Q ss_pred ch-hhhhcCCCCCCEEEccCCccCcc-cccc-----ccCCCCCcEEeccCCCCC
Q 044005 187 SI-RAKIGNLMQLTELEMDNNKLFGQ-IPKS-----LRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 187 ~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~l~~n~~~ 233 (248)
.. -...+.++.|+.|+++.+.+... .|+. ...+++|++|++..|.+.
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 32 13567789999999999988742 2222 346799999999999995
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=5.5e-09 Score=66.11 Aligned_cols=60 Identities=32% Similarity=0.469 Sum_probs=37.8
Q ss_pred CCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCC
Q 044005 173 NLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHL 232 (248)
Q Consensus 173 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 232 (248)
+|++|++++|++....+..+..+++|++|++++|.++...+..+..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666544445566666666666666666655555666666777777666653
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.80 E-value=1.1e-10 Score=104.39 Aligned_cols=119 Identities=29% Similarity=0.302 Sum_probs=88.3
Q ss_pred CCCCCcccccCCccccCCCCCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCC
Q 044005 87 SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV 163 (248)
Q Consensus 87 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 163 (248)
+.++|++. .+..++.-++.|++|++++|+++.. ..++.|++||+++|.+. .+|..-..-..|+.|.+++|.++..
T Consensus 170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL 247 (1096)
T ss_pred hcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh
Confidence 44555554 5667788889999999999999877 77889999999999987 5553221122389999999988743
Q ss_pred CcccccCCCCCcEEEecCcccCcc-hhhhhcCCCCCCEEEccCCccC
Q 044005 164 IAPSIGSLSNLKGLYLYSNRLSRS-IRAKIGNLMQLTELEMDNNKLF 209 (248)
Q Consensus 164 ~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~ 209 (248)
..+.++.+|..||+++|-+.+. -...+..+..|+.|+|.||.+-
T Consensus 248 --~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 --RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred --hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 4667889999999999988542 1134556677888999998764
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=1.1e-08 Score=64.74 Aligned_cols=59 Identities=31% Similarity=0.427 Sum_probs=29.9
Q ss_pred CccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcc
Q 044005 125 FLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNR 183 (248)
Q Consensus 125 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (248)
+|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555552222344555555555555555554334445555555555555554
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.64 E-value=2.7e-08 Score=79.98 Aligned_cols=202 Identities=15% Similarity=0.122 Sum_probs=106.3
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc------------------CCCCCccc
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS------------------SLGNNRLS 94 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~------------------~L~~~~~~ 94 (248)
+..++.++|++|.|..+....++ ..+..-++|++.+++.-..+.....++. +|+.|.|.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~---~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELC---NVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHH---HHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 45789999999999876666665 3333344466665553221000011111 33444333
Q ss_pred ccCC----ccccCCCCCcEEEccCCccCCC------------------CCCCCccEEEcCCCccCCCCch-----hhcCC
Q 044005 95 GVIP----PEIGLLTHLKHLHIDMNKLHGS------------------ENLKFLSTVDLSKNKFSSSMPN-----SLRKV 147 (248)
Q Consensus 95 ~~~~----~~~~~l~~L~~L~l~~n~l~~~------------------~~~~~L~~L~ls~n~l~~~~~~-----~~~~l 147 (248)
...| +.+.+-..|++|.+++|.+.-+ ..-|.|+++...+|++. ..+. .+...
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhh
Confidence 3333 2344556666666666655322 23455666666666654 2221 12222
Q ss_pred CCcceEEeeCCcCCCC-----CcccccCCCCCcEEEecCcccCcc----hhhhhcCCCCCCEEEccCCccCccccccc--
Q 044005 148 KPLLSLGFALNYLSGV-----IAPSIGSLSNLKGLYLYSNRLSRS----IRAKIGNLMQLTELEMDNNKLFGQIPKSL-- 216 (248)
Q Consensus 148 ~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-- 216 (248)
..|+.+.+..|.|... ....+..+.+|+.|++++|.++.. +...+..++.|++|.+.+|-++.....++
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 4566666666666421 112334456777777777766432 22344455667777777776654322221
Q ss_pred ----cCCCCCcEEeccCCCCCCCCCC
Q 044005 217 ----RNFTSLNRVHLEQNHLNGNTYE 238 (248)
Q Consensus 217 ----~~l~~L~~L~l~~n~~~~~~~~ 238 (248)
...|+|..|.+.+|.+.+.+..
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGGIIL 290 (388)
T ss_pred HhhhhcCCCccccccchhhhcCceee
Confidence 1246777777777766544433
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=4.7e-09 Score=92.03 Aligned_cols=126 Identities=29% Similarity=0.403 Sum_probs=64.0
Q ss_pred cCCCCCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchh-hcCCCCcceEEeeCCcCCCCCcccccCCCCCcEE
Q 044005 102 GLLTHLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNS-LRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGL 177 (248)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 177 (248)
..++.|+.|++++|.|+.+ ..+..|+.+++++|.+. .+... ...+.+++.+.+.+|.+... ..+..+..+..+
T Consensus 137 ~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 137 STLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLL 213 (414)
T ss_pred hhccchhhheeccCcchhccCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHh
Confidence 4444466666666666555 33455666666666655 23221 34455666666666655422 222233333333
Q ss_pred EecCcccCcchhhhhcCCCC--CCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 178 YLYSNRLSRSIRAKIGNLMQ--LTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 178 ~l~~n~i~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
++..|.+.... .+..... |+.+++.+|.+. ..+..+..+.++..+++..|++.
T Consensus 214 ~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 214 SLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 45555443211 1111222 566677777666 33244555666677777766664
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.60 E-value=2.8e-08 Score=82.22 Aligned_cols=173 Identities=19% Similarity=0.236 Sum_probs=126.3
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc---------------------CCCCC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS---------------------SLGNN 91 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~---------------------~L~~~ 91 (248)
.++|+.||||+|-+.-..+..+. .-|+...+|++|.|.+|.+....|..-. ...+|
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~---~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLE---ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred CCceeEeeccccccCccchHHHH---HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34899999999999866666666 2333455688888888877554433210 55556
Q ss_pred cccc----cCCccccCCCCCcEEEccCCccCCC---------CCCCCccEEEcCCCccCCC----CchhhcCCCCcceEE
Q 044005 92 RLSG----VIPPEIGLLTHLKHLHIDMNKLHGS---------ENLKFLSTVDLSKNKFSSS----MPNSLRKVKPLLSLG 154 (248)
Q Consensus 92 ~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~ 154 (248)
++.. .+...++..+.|+.+.+..|.|... ..++.|+.||+.+|-++.. +...++.++.|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 6553 2344577789999999999988433 6789999999999988643 345677889999999
Q ss_pred eeCCcCCCCCcccc-----cCCCCCcEEEecCcccCcc----hhhhhcCCCCCCEEEccCCcc
Q 044005 155 FALNYLSGVIAPSI-----GSLSNLKGLYLYSNRLSRS----IRAKIGNLMQLTELEMDNNKL 208 (248)
Q Consensus 155 l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l 208 (248)
++.|.+.......+ ...++|+.+.+.+|.|+.. +.......+.|+.|+|++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999875433222 2368999999999998642 333455678899999999998
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.5e-08 Score=82.50 Aligned_cols=174 Identities=15% Similarity=0.072 Sum_probs=94.6
Q ss_pred cEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccC
Q 044005 35 RVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDM 114 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 114 (248)
+|++|||+...++......+-.+++. |+.|.+.++++ .+.+...+.+-.+|+.|++++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~k------Lk~lSlEg~~L----------------dD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSK------LKNLSLEGLRL----------------DDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHh------hhhcccccccc----------------CcHHHHHHhccccceeecccc
Confidence 57777777776654322222215555 66666666665 334455666677777777777
Q ss_pred C-ccCCC------CCCCCccEEEcCCCccCCCCc-hhhcC-CCCcceEEeeCCcCC---CCCcccccCCCCCcEEEecCc
Q 044005 115 N-KLHGS------ENLKFLSTVDLSKNKFSSSMP-NSLRK-VKPLLSLGFALNYLS---GVIAPSIGSLSNLKGLYLYSN 182 (248)
Q Consensus 115 n-~l~~~------~~~~~L~~L~ls~n~l~~~~~-~~~~~-l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n 182 (248)
+ .++.. ..+..|..|+++.|.+..... ..+.. -.+|..|+++++.-. ..+..-...+++|.+|++++|
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 5 35444 566677777777776543221 12222 235666666665422 111122235567777777766
Q ss_pred cc-CcchhhhhcCCCCCCEEEccCCccCc-cccccccCCCCCcEEeccCC
Q 044005 183 RL-SRSIRAKIGNLMQLTELEMDNNKLFG-QIPKSLRNFTSLNRVHLEQN 230 (248)
Q Consensus 183 ~i-~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n 230 (248)
.. +......+.+++.|++|.++.|.... ...-.+...|.|.+|++.++
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 43 22223345556667777776665321 11122445666777766654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=2.1e-08 Score=90.14 Aligned_cols=131 Identities=27% Similarity=0.271 Sum_probs=84.9
Q ss_pred CccccCCCCCcEEEccCCccCCC------------------------------------CCCCCccEEEcCCCccCCCCc
Q 044005 98 PPEIGLLTHLKHLHIDMNKLHGS------------------------------------ENLKFLSTVDLSKNKFSSSMP 141 (248)
Q Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~------------------------------------~~~~~L~~L~ls~n~l~~~~~ 141 (248)
|-.|..+.+|++|.++++.+... .....|.+.++++|.+. .+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 56677888999999999877432 11234566666677665 455
Q ss_pred hhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCC
Q 044005 142 NSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTS 221 (248)
Q Consensus 142 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 221 (248)
..+.-++.+++|++++|++... ..+..++.|++||+++|+++ .+|..-..-++|+.|.+++|.++. + .-+.++.+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L-~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-L-RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh-h-hhHHhhhh
Confidence 5666677788888888877633 36667778888888888775 344322222347777777777662 2 22456677
Q ss_pred CcEEeccCCCCCC
Q 044005 222 LNRVHLEQNHLNG 234 (248)
Q Consensus 222 L~~L~l~~n~~~~ 234 (248)
|+.||+++|-+.+
T Consensus 256 L~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSE 268 (1096)
T ss_pred hhccchhHhhhhc
Confidence 7777777776653
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.39 E-value=1.9e-08 Score=88.27 Aligned_cols=127 Identities=24% Similarity=0.339 Sum_probs=66.5
Q ss_pred ccCCCCCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCc-ccccCCCCCcE
Q 044005 101 IGLLTHLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIA-PSIGSLSNLKG 176 (248)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 176 (248)
+..+++|++|++++|.|+.+ ..++.|+.|++++|.|. .+. .+..+..|+.+++++|.+....+ . ...+.+++.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~ 190 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEE 190 (414)
T ss_pred hhhhhcchheeccccccccccchhhccchhhheeccCcch-hcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHH
Confidence 45566666666666666554 34445666666666665 222 22335566666666666653322 1 345556666
Q ss_pred EEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCC--CCcEEeccCCCCCC
Q 044005 177 LYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFT--SLNRVHLEQNHLNG 234 (248)
Q Consensus 177 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~ 234 (248)
+.+.+|.+... ..+..+..+..+++..|.++.. ..+..+. +|+.+++.+|.+..
T Consensus 191 l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 191 LDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL--EGLNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred HhccCCchhcc--cchHHHHHHHHhhcccccceec--cCcccchhHHHHHHhcccCcccc
Confidence 66666655321 2222233333445555655521 1112222 27888888888863
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.35 E-value=3.4e-07 Score=86.67 Aligned_cols=175 Identities=17% Similarity=0.232 Sum_probs=113.2
Q ss_pred CCcEEEEeeCCCc--cccccCc-chhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcE
Q 044005 33 AKRVISINLNTIG--LKVRFTN-SHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKH 109 (248)
Q Consensus 33 ~~~l~~L~l~~~~--l~~~~~~-~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~ 109 (248)
.+.|++|=+.+|. +. .++. .|. .|+. |++|||++|.- .+.+|..++.+-+|++
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~-~m~~------LrVLDLs~~~~----------------l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFR-SLPL------LRVLDLSGNSS----------------LSKLPSSIGELVHLRY 599 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHh-hCcc------eEEEECCCCCc----------------cCcCChHHhhhhhhhc
Confidence 3468888888886 33 3333 344 7888 99999998654 1367899999999999
Q ss_pred EEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCC--CCCcccccCCCCCcEEEecCcc
Q 044005 110 LHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS--GVIAPSIGSLSNLKGLYLYSNR 183 (248)
Q Consensus 110 L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 183 (248)
|+++++.+..+ .++..|.+|++..+.....++.....+++|++|.+...... ...-..+..+.+|+.+......
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 99999999866 67788999999988765456666777999999999876532 1222344455555555543322
Q ss_pred cCcchhhhhcCCCCCC----EEEccCCccCccccccccCCCCCcEEeccCCCCCC
Q 044005 184 LSRSIRAKIGNLMQLT----ELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 184 i~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
. .+...+..+..|. .+.+.++... ..+..+..+.+|+.|.+..+.+..
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 2 1111222222222 2222222222 345566778888888888877753
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=2.4e-07 Score=75.54 Aligned_cols=187 Identities=14% Similarity=0.066 Sum_probs=95.0
Q ss_pred CcEEEEeeCCCcccc-ccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc--------CCCCCcccc-cCCccccC
Q 044005 34 KRVISINLNTIGLKV-RFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS--------SLGNNRLSG-VIPPEIGL 103 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~-~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~--------~L~~~~~~~-~~~~~~~~ 103 (248)
.+++++||.+|.+++ .-..++.++||. |++|+++.|.+....+..|. -|.+..+.. ..-..+..
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~------l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPA------LTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCcc------ceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 478999999998874 222333336777 99999999998444444331 111111110 01122333
Q ss_pred CCCCcEEEccCCccCCC--------CCCCCccEEEcCCCccCCC--CchhhcCCCCcceEEeeCCcCCCCC-cccccCCC
Q 044005 104 LTHLKHLHIDMNKLHGS--------ENLKFLSTVDLSKNKFSSS--MPNSLRKVKPLLSLGFALNYLSGVI-APSIGSLS 172 (248)
Q Consensus 104 l~~L~~L~l~~n~l~~~--------~~~~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~ 172 (248)
+|.++.|+++.|.+..+ ..-+.+.++.+..|..... .......++++..+-+..|.+.... ......++
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 44444555555432211 1112333443333332110 1112223455566666666554221 12333455
Q ss_pred CCcEEEecCcccCc-chhhhhcCCCCCCEEEccCCccCcccc------ccccCCCCCcEEe
Q 044005 173 NLKGLYLYSNRLSR-SIRAKIGNLMQLTELEMDNNKLFGQIP------KSLRNFTSLNRVH 226 (248)
Q Consensus 173 ~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~l~~l~~L~~L~ 226 (248)
.+-.|+++.++|.. .-...+.++++|+.|.++.+++.+.+- -.++++++++.|+
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 66677777777743 223567777788888888877664221 1245666666664
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=5.4e-08 Score=70.59 Aligned_cols=101 Identities=23% Similarity=0.254 Sum_probs=67.0
Q ss_pred ceeEEEeccccccccCCCCCcCCCCCcccccCCccccCC---CCCcEEEccCCccCCC-----CCCCCccEEEcCCCccC
Q 044005 66 KASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLL---THLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFS 137 (248)
Q Consensus 66 ~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~ 137 (248)
.+..+||+.|.+ ..+++.+..+ ..|...++++|.+..+ ..++.++++++++|.++
T Consensus 28 E~h~ldLssc~l-----------------m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis 90 (177)
T KOG4579|consen 28 ELHFLDLSSCQL-----------------MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS 90 (177)
T ss_pred Hhhhcccccchh-----------------hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh
Confidence 467788888877 2345554443 3455557777777655 45566777777777777
Q ss_pred CCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccC
Q 044005 138 SSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLS 185 (248)
Q Consensus 138 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 185 (248)
.+|..+..++.|+.|+++.|.+. ..|.-+..+.++..|+..+|.+.
T Consensus 91 -dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 91 -DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred -hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 66666777777777777777776 44555555667777777777664
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=1.5e-06 Score=70.14 Aligned_cols=178 Identities=14% Similarity=0.099 Sum_probs=106.5
Q ss_pred HHHHHhhhceeEEEeccccccccCCCCCc----------CCCCCccc--------ccC-------CccccCCCCCcEEEc
Q 044005 58 FLILHILIKASIYYLASYRLKLATPPISS----------SLGNNRLS--------GVI-------PPEIGLLTHLKHLHI 112 (248)
Q Consensus 58 l~~L~~l~~L~~L~ls~n~~~~~~~~~~~----------~L~~~~~~--------~~~-------~~~~~~l~~L~~L~l 112 (248)
+..+..++.++.+|||+|.| ...... +|.--+|. +.+ .+++-+|++|+.+++
T Consensus 23 ~eel~~~d~~~evdLSGNti---gtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTI---GTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHHHHhhcceeEEeccCCcc---cHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 34555566799999999999 433221 11111111 111 223455677777777
Q ss_pred cCCccCCC---------CCCCCccEEEcCCCccCCCCchhh-------------cCCCCcceEEeeCCcCCCCC----cc
Q 044005 113 DMNKLHGS---------ENLKFLSTVDLSKNKFSSSMPNSL-------------RKVKPLLSLGFALNYLSGVI----AP 166 (248)
Q Consensus 113 ~~n~l~~~---------~~~~~L~~L~ls~n~l~~~~~~~~-------------~~l~~L~~L~l~~n~l~~~~----~~ 166 (248)
++|-+..- ...+.|++|.+++|.+....-..+ ..-+.|+.+....|++..-. ..
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence 77766332 455667777777776542111111 12355777777777765221 11
Q ss_pred cccCCCCCcEEEecCcccCcch-----hhhhcCCCCCCEEEccCCccCcc----ccccccCCCCCcEEeccCCCCCCCCC
Q 044005 167 SIGSLSNLKGLYLYSNRLSRSI-----RAKIGNLMQLTELEMDNNKLFGQ----IPKSLRNFTSLNRVHLEQNHLNGNTY 237 (248)
Q Consensus 167 ~~~~l~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~ 237 (248)
.+..-..|+.+.+..|.|.... -..+..+.+|+.|++.+|-++.. +...+..++.|++|.+..|.++.++.
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 2223357888888888775431 12345678999999999988742 33445667889999999998876654
Q ss_pred C
Q 044005 238 E 238 (248)
Q Consensus 238 ~ 238 (248)
+
T Consensus 260 ~ 260 (388)
T COG5238 260 K 260 (388)
T ss_pred H
Confidence 4
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=1.2e-06 Score=81.04 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=54.4
Q ss_pred CCCCcEEEccCCccCCC------CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCC-CCcccccCCCCCcE
Q 044005 104 LTHLKHLHIDMNKLHGS------ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSG-VIAPSIGSLSNLKG 176 (248)
Q Consensus 104 l~~L~~L~l~~n~l~~~------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 176 (248)
+|+|++|.+.+-.+... .++++|..||+|+..++. + ..++++++|+.|.+.+=.+.. ..-..+..+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 56666666666544222 556666666666666652 2 455566666666665544442 11124455666666
Q ss_pred EEecCcccCcc------hhhhhcCCCCCCEEEccCCccCc
Q 044005 177 LYLYSNRLSRS------IRAKIGNLMQLTELEMDNNKLFG 210 (248)
Q Consensus 177 L~l~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~ 210 (248)
||++....... ..+....++.|+.|+.+++.+.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 66665433211 11112235566666666655554
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.13 E-value=6e-06 Score=63.84 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=33.8
Q ss_pred CcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCC-cccccCCCCCcEEEecCc
Q 044005 107 LKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVI-APSIGSLSNLKGLYLYSN 182 (248)
Q Consensus 107 L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n 182 (248)
...+|+++|.+-.. ..++.|.+|.+.+|+|...-|..-..+++|+.|.+.+|++.... -..+..+++|++|.+-+|
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 34455555544333 34444555555555554222222223344555555555543110 112334445555555555
Q ss_pred cc
Q 044005 183 RL 184 (248)
Q Consensus 183 ~i 184 (248)
++
T Consensus 124 pv 125 (233)
T KOG1644|consen 124 PV 125 (233)
T ss_pred ch
Confidence 44
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=3.3e-07 Score=66.60 Aligned_cols=130 Identities=22% Similarity=0.246 Sum_probs=84.6
Q ss_pred CCcEEEccCCccCCC-------CCCCCccEEEcCCCccCCCCchhh-cCCCCcceEEeeCCcCCCCCcccccCCCCCcEE
Q 044005 106 HLKHLHIDMNKLHGS-------ENLKFLSTVDLSKNKFSSSMPNSL-RKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGL 177 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~-------~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 177 (248)
.+..++++.|.+-.+ .....|+..++++|.+. .+|+.+ ...+.+..|++++|.++ .+|..+..++.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344567777765433 44456777888888887 555544 44567888888888888 567778888888888
Q ss_pred EecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCC
Q 044005 178 YLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEH 239 (248)
Q Consensus 178 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 239 (248)
+++.|.+. ..|..+..+.++-.|+..+|... .++..+-.-...--+++..+.+.++.+..
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 88888885 45665555777777777777665 44433322223333344556666665554
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.4e-07 Score=76.89 Aligned_cols=172 Identities=15% Similarity=0.085 Sum_probs=114.8
Q ss_pred cEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEecccc-ccccCCCCCcCCCCCcccccCCccccCCCCCcEEEcc
Q 044005 35 RVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYR-LKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHID 113 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~-~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~ 113 (248)
.|+.|.+.++.+.+.+...++ +=.. |+.||++.+. | +. |. ..-.+..++.|..|+++
T Consensus 211 kLk~lSlEg~~LdD~I~~~iA-kN~~------L~~lnlsm~sG~---t~--------n~----~~ll~~scs~L~~LNls 268 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIA-KNSN------LVRLNLSMCSGF---TE--------NA----LQLLLSSCSRLDELNLS 268 (419)
T ss_pred hhhhccccccccCcHHHHHHh-cccc------ceeecccccccc---ch--------hH----HHHHHHhhhhHhhcCch
Confidence 789999999999999999998 7788 9999999864 3 11 11 11235678889999999
Q ss_pred CCccCCC-------CCCCCccEEEcCCCccC---CCCchhhcCCCCcceEEeeCCc-CCCCCcccccCCCCCcEEEecCc
Q 044005 114 MNKLHGS-------ENLKFLSTVDLSKNKFS---SSMPNSLRKVKPLLSLGFALNY-LSGVIAPSIGSLSNLKGLYLYSN 182 (248)
Q Consensus 114 ~n~l~~~-------~~~~~L~~L~ls~n~l~---~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 182 (248)
+|.+... .--..|+.|+++++.-. ..+.-...+++.|.+||++.|- ++......+.+++.|++|+++.|
T Consensus 269 Wc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 269 WCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred HhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 9877543 22346888888876421 1223344678889999998764 34344556778889999999988
Q ss_pred ccCcchhh---hhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCC
Q 044005 183 RLSRSIRA---KIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQN 230 (248)
Q Consensus 183 ~i~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 230 (248)
.. ..|. .+...+.|.+|++-++--.+.+--....+++|+.-....|
T Consensus 349 Y~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q~~~ 397 (419)
T KOG2120|consen 349 YD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQHFN 397 (419)
T ss_pred cC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccccceeee
Confidence 54 3343 4567788999988776433222122334566654433333
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=1.2e-06 Score=80.91 Aligned_cols=132 Identities=20% Similarity=0.207 Sum_probs=99.3
Q ss_pred CCCcEEEccCCccCC--C-----CCCCCccEEEcCCCccC-CCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcE
Q 044005 105 THLKHLHIDMNKLHG--S-----ENLKFLSTVDLSKNKFS-SSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKG 176 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~--~-----~~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 176 (248)
.+|++|++++...-. . ..+|.|+.|.+++-.+. ..+...+..+++|..||+++++++.. .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 589999998865422 1 67899999999987763 23456677899999999999999854 78889999999
Q ss_pred EEecCcccCc-chhhhhcCCCCCCEEEccCCccCccc------cccccCCCCCcEEeccCCCCCCCCCC
Q 044005 177 LYLYSNRLSR-SIRAKIGNLMQLTELEMDNNKLFGQI------PKSLRNFTSLNRVHLEQNHLNGNTYE 238 (248)
Q Consensus 177 L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~l~~n~~~~~~~~ 238 (248)
|.+.+=.+.. ..-..+..+++|+.||++........ .+....+|+|+.||.++..+...+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 9988876643 22235667999999999987654321 22334589999999999988655443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=7e-06 Score=48.01 Aligned_cols=36 Identities=31% Similarity=0.634 Sum_probs=16.0
Q ss_pred CCCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 197 QLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 197 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
+|++|++++|.++ .++..++++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33333444555555555555443
No 55
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.01 E-value=7.1e-06 Score=77.86 Aligned_cols=123 Identities=25% Similarity=0.296 Sum_probs=90.9
Q ss_pred CCCcEEEccCCc--cCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEE
Q 044005 105 THLKHLHIDMNK--LHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGL 177 (248)
Q Consensus 105 ~~L~~L~l~~n~--l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 177 (248)
+.|++|-+.+|. +... ..++.|..||+++|.-.+.+|..++.+.+||+|+++++.+. .+|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 368888887775 3222 56788999999988765688999999999999999999988 788899999999999
Q ss_pred EecCcccCcchhhhhcCCCCCCEEEccCCccC--ccccccccCCCCCcEEecc
Q 044005 178 YLYSNRLSRSIRAKIGNLMQLTELEMDNNKLF--GQIPKSLRNFTSLNRVHLE 228 (248)
Q Consensus 178 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~ 228 (248)
++..+.....+|.....+.+|++|.+...... ......+..+.+|+.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99887655555666677889999988765422 2233444555566655554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=2e-05 Score=46.04 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=17.8
Q ss_pred CccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCC
Q 044005 125 FLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS 161 (248)
Q Consensus 125 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 161 (248)
+|++|++++|.++ .+|+.+..+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=9e-05 Score=64.12 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=50.5
Q ss_pred HHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCC-ccCCCC--CCCCccEEEcCCC
Q 044005 58 FLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMN-KLHGSE--NLKFLSTVDLSKN 134 (248)
Q Consensus 58 l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~~L~~L~ls~n 134 (248)
...++.+..++.|++++|.+ ..+| .-..+|++|.++++ .++.+. -...|++|++++|
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L-----------------~sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDI-----------------ESLP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCC-----------------cccC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence 46688888999999999887 2334 12246889999874 444442 2347999999988
Q ss_pred -ccCCCCchhhcCCCCcceEEeeCCcC
Q 044005 135 -KFSSSMPNSLRKVKPLLSLGFALNYL 160 (248)
Q Consensus 135 -~l~~~~~~~~~~l~~L~~L~l~~n~l 160 (248)
.+. .+|. +|+.|++.++..
T Consensus 105 s~L~-sLP~------sLe~L~L~~n~~ 124 (426)
T PRK15386 105 PEIS-GLPE------SVRSLEIKGSAT 124 (426)
T ss_pred cccc-cccc------ccceEEeCCCCC
Confidence 444 4443 466677766543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=0.00011 Score=56.91 Aligned_cols=121 Identities=20% Similarity=0.200 Sum_probs=91.2
Q ss_pred CcEEEccCCccCCCC----CCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCc
Q 044005 107 LKHLHIDMNKLHGSE----NLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSN 182 (248)
Q Consensus 107 L~~L~l~~n~l~~~~----~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 182 (248)
=+.+++++.++.... .......+|+++|.+. .+ ..+..++.|.+|.+++|.|+...|.--.-+++|+.|.+.+|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 456788888776652 2345788999999986 33 36778999999999999999555443344578999999999
Q ss_pred ccCcch-hhhhcCCCCCCEEEccCCccCcc---ccccccCCCCCcEEeccC
Q 044005 183 RLSRSI-RAKIGNLMQLTELEMDNNKLFGQ---IPKSLRNFTSLNRVHLEQ 229 (248)
Q Consensus 183 ~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~l~~ 229 (248)
.|.... ...+..+++|++|.+-+|+++.. --..+-.+|+|+.||+..
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 985422 24577899999999999998853 223466789999999875
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00052 Score=59.49 Aligned_cols=134 Identities=12% Similarity=0.095 Sum_probs=73.8
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEcc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHID 113 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~ 113 (248)
.+++.|++++|. +. .++. -..+|+.|.+++|.- .. .+|..+ .++|++|.++
T Consensus 52 ~~l~~L~Is~c~--------L~-sLP~--LP~sLtsL~Lsnc~n---Lt-------------sLP~~L--P~nLe~L~Ls 102 (426)
T PRK15386 52 RASGRLYIKDCD--------IE-SLPV--LPNELTEITIENCNN---LT-------------TLPGSI--PEGLEKLTVC 102 (426)
T ss_pred cCCCEEEeCCCC--------Cc-ccCC--CCCCCcEEEccCCCC---cc-------------cCCchh--hhhhhheEcc
Confidence 468889988773 45 5552 122689999987543 11 233322 2578889998
Q ss_pred CC-ccCCCCCCCCccEEEcCCCccCCCCchhhcCC-CCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhh
Q 044005 114 MN-KLHGSENLKFLSTVDLSKNKFSSSMPNSLRKV-KPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAK 191 (248)
Q Consensus 114 ~n-~l~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 191 (248)
+| .+..+ ...|++|+++.+... . +..+ ++|+.|.+.++.........-.-..+|++|++++|... ..|..
T Consensus 103 ~Cs~L~sL--P~sLe~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~ 174 (426)
T PRK15386 103 HCPEISGL--PESVRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEK 174 (426)
T ss_pred Cccccccc--ccccceEEeCCCCCc-c----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccc
Confidence 87 55443 235888888765543 1 1222 24666666433211000000011257888888877653 23322
Q ss_pred hcCCCCCCEEEccCC
Q 044005 192 IGNLMQLTELEMDNN 206 (248)
Q Consensus 192 ~~~l~~L~~L~L~~n 206 (248)
+. .+|+.|.++.+
T Consensus 175 LP--~SLk~L~ls~n 187 (426)
T PRK15386 175 LP--ESLQSITLHIE 187 (426)
T ss_pred cc--ccCcEEEeccc
Confidence 22 46777777665
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=4.8e-05 Score=62.41 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=108.4
Q ss_pred EEEEeeCCCcccccc-CcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccC
Q 044005 36 VISINLNTIGLKVRF-TNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDM 114 (248)
Q Consensus 36 l~~L~l~~~~l~~~~-~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 114 (248)
+.-+-+.++.|..+. ...+++..+. ++.+||.+|.+ +.. ..+...+.++|.|+.|+++.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~------v~elDL~~N~i---SdW-----------seI~~ile~lP~l~~LNls~ 106 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTD------VKELDLTGNLI---SDW-----------SEIGAILEQLPALTTLNLSC 106 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhh------hhhhhcccchh---ccH-----------HHHHHHHhcCccceEeeccC
Confidence 335556666665432 2344545567 89999999998 221 13344567889999999999
Q ss_pred CccCCC-----CCCCCccEEEcCCCccCCCCc-hhhcCCCCcceEEeeCCcCCCC--CcccccC----------------
Q 044005 115 NKLHGS-----ENLKFLSTVDLSKNKFSSSMP-NSLRKVKPLLSLGFALNYLSGV--IAPSIGS---------------- 170 (248)
Q Consensus 115 n~l~~~-----~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~---------------- 170 (248)
|.+... ....+|++|-+.+..+.-... ..+..++.+++|+++.|.+... ...+...
T Consensus 107 N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 107 NSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ 186 (418)
T ss_pred CcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH
Confidence 988654 234578888888777654333 3456677788888888754311 0111111
Q ss_pred -----------CCCCcEEEecCcccCcchh-hhhcCCCCCCEEEccCCccCc-cccccccCCCCCcEEeccCCCCCCCC
Q 044005 171 -----------LSNLKGLYLYSNRLSRSIR-AKIGNLMQLTELEMDNNKLFG-QIPKSLRNFTSLNRVHLEQNHLNGNT 236 (248)
Q Consensus 171 -----------l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~ 236 (248)
++++..+-+-.|.+...-. +.....+.+..|+|+.+++.. .-...+..++.|..|.+.++.+.+..
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 1333334444443322111 112234555677788887763 22355778899999999999887543
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.36 E-value=0.00014 Score=58.47 Aligned_cols=105 Identities=21% Similarity=0.171 Sum_probs=65.4
Q ss_pred CccccCCCCCcEEEccCCccCCC---CCCCCccEEEcCCC--ccCCCCchhhcCCCCcceEEeeCCcCCCC-CcccccCC
Q 044005 98 PPEIGLLTHLKHLHIDMNKLHGS---ENLKFLSTVDLSKN--KFSSSMPNSLRKVKPLLSLGFALNYLSGV-IAPSIGSL 171 (248)
Q Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l 171 (248)
....-.+..|+.+++.+..++.+ ..+++|++|.++.| ++.+.++.....+++|+++++++|++... --..+..+
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 33344455667777777666555 66678888999888 66656666666678888888888887621 11234456
Q ss_pred CCCcEEEecCcccCcch---hhhhcCCCCCCEEE
Q 044005 172 SNLKGLYLYSNRLSRSI---RAKIGNLMQLTELE 202 (248)
Q Consensus 172 ~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~ 202 (248)
.+|..|++..|..+... -..+.-+++|.+|+
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 67777777777554311 12334455566554
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00036 Score=56.12 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=70.1
Q ss_pred CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCC--cCCCCCcccccCCCCCcEEEecCcccCcc-hhhhhcCCCC
Q 044005 121 ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALN--YLSGVIAPSIGSLSNLKGLYLYSNRLSRS-IRAKIGNLMQ 197 (248)
Q Consensus 121 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~ 197 (248)
..+..|+.+++.+..++ .+ ..+..+++|++|.++.| .+.+.++.-...+++|+++++++|+|... -...+..+.+
T Consensus 40 d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 45567888888777765 22 24567889999999999 55544444445669999999999998531 1134556777
Q ss_pred CCEEEccCCccCcc---ccccccCCCCCcEEe
Q 044005 198 LTELEMDNNKLFGQ---IPKSLRNFTSLNRVH 226 (248)
Q Consensus 198 L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~ 226 (248)
|..|++.+|..+.. --..+.-+++|++|+
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 88889988877641 112345567777665
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=3.5e-05 Score=62.61 Aligned_cols=99 Identities=22% Similarity=0.283 Sum_probs=57.8
Q ss_pred CCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcch-hhhhcCCCCCCEEE
Q 044005 124 KFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSI-RAKIGNLMQLTELE 202 (248)
Q Consensus 124 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~ 202 (248)
.+.+.|+..+|.++ .+ ..+.+|+.|+.|.++-|+|+.. ..+..+++|+.|.+..|.|.... -..+..+++|+.|+
T Consensus 19 ~~vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCcc-HH-HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34555666666655 22 1334566666666666666633 23455666777777777664321 13456677777777
Q ss_pred ccCCccCcccc-----ccccCCCCCcEEe
Q 044005 203 MDNNKLFGQIP-----KSLRNFTSLNRVH 226 (248)
Q Consensus 203 L~~n~l~~~~~-----~~l~~l~~L~~L~ 226 (248)
|..|...+.-+ ..++.+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777654322 2355677777765
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=2.6e-05 Score=63.35 Aligned_cols=99 Identities=22% Similarity=0.253 Sum_probs=65.1
Q ss_pred eeCCCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCc
Q 044005 29 HCNSAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLK 108 (248)
Q Consensus 29 ~c~~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~ 108 (248)
+|....+++.|+.-+|++++. .++.+|+. |++|.||-|.| .. -..+.++++|+
T Consensus 14 K~sdl~~vkKLNcwg~~L~DI---sic~kMp~------lEVLsLSvNkI---ss---------------L~pl~rCtrLk 66 (388)
T KOG2123|consen 14 KCSDLENVKKLNCWGCGLDDI---SICEKMPL------LEVLSLSVNKI---SS---------------LAPLQRCTRLK 66 (388)
T ss_pred HhhHHHHhhhhcccCCCccHH---HHHHhccc------ceeEEeecccc---cc---------------chhHHHHHHHH
Confidence 455555777888888887642 23436677 88888888887 22 23467777888
Q ss_pred EEEccCCccCCC------CCCCCccEEEcCCCccCCCCc-----hhhcCCCCcceEE
Q 044005 109 HLHIDMNKLHGS------ENLKFLSTVDLSKNKFSSSMP-----NSLRKVKPLLSLG 154 (248)
Q Consensus 109 ~L~l~~n~l~~~------~~~~~L~~L~ls~n~l~~~~~-----~~~~~l~~L~~L~ 154 (248)
.|.++.|.|..+ .++++|+.|.+..|.-.+.-+ ..+.-+++|++||
T Consensus 67 ElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 67 ELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888877666 677777777777766443332 2344566676664
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.92 E-value=0.0048 Score=44.52 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=45.7
Q ss_pred ccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCC
Q 044005 99 PEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSN 173 (248)
Q Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 173 (248)
.+|..+.+|+.+.+.. .+..+ ..+..|+.+.+..+ +.......+..+.+|+.+.+.. .+.......+..+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3456666777777654 23222 44556667766654 4322223455555667776654 332222334455666
Q ss_pred CcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCC
Q 044005 174 LKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSL 222 (248)
Q Consensus 174 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 222 (248)
|+.+.+..+ +.......+..+ .++.+.+.. .+.......+.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666554 332233344444 666666554 2222233344444444
No 66
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.84 E-value=0.00032 Score=40.67 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=18.4
Q ss_pred CCCCCCCCccccCCcccCC-CC-CccceeeeC
Q 044005 2 DNKPSKPEPLLLSLWNLYP-IN-ATNFGIHCN 31 (248)
Q Consensus 2 ~~~~~~~~~~~~~~w~~~~-~~-~~~~~~~c~ 31 (248)
|.....++...+++|.... .+ |.|.||+|+
T Consensus 12 k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 12 KKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 3445556689999999875 55 999999995
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.34 E-value=0.013 Score=42.24 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCE
Q 044005 121 ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTE 200 (248)
Q Consensus 121 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 200 (248)
..+..|+.+.+.. .+...-...+..+.+|+.+.+..+ +.......+..+.+++.+.+.. .+.......+..+.+++.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 3456788888875 455333456778889999999875 5544445677777899999976 443333456777899999
Q ss_pred EEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 044005 201 LEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNF 245 (248)
Q Consensus 201 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~ 245 (248)
+.+..+ +.......+..+ +|+.+.+.. .+..-....+.++..
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 999775 553444556776 899998875 333222334444433
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.79 E-value=0.0033 Score=30.67 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=9.0
Q ss_pred CcEEeccCCCCCCCCCCCCC
Q 044005 222 LNRVHLEQNHLNGNTYEHIP 241 (248)
Q Consensus 222 L~~L~l~~n~~~~~~~~~i~ 241 (248)
|++|++++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444555555444 4444443
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.68 E-value=5.1e-05 Score=67.46 Aligned_cols=183 Identities=20% Similarity=0.213 Sum_probs=85.8
Q ss_pred EEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCC-CCCcEEEccC
Q 044005 36 VISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLL-THLKHLHIDM 114 (248)
Q Consensus 36 l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~ 114 (248)
+..++|.+|.+.......++ ..+....+|..|++++|.+..... ..+...+... ..+++|.+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~---~~l~t~~~L~~L~l~~n~l~~~g~------------~~l~~~l~~~~~~l~~L~l~~ 153 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELA---QALKTLPTLGQLDLSGNNLGDEGA------------RLLCEGLRLPQCLLQTLELVS 153 (478)
T ss_pred HHHhhhhhCccccchHHHHH---HHhcccccHhHhhcccCCCccHhH------------HHHHhhcccchHHHHHHHhhc
Confidence 56667777776655444444 333334446667777777621100 0111222222 3455555555
Q ss_pred CccCCC---------CCCCCccEEEcCCCccCCC----Cchhhc----CCCCcceEEeeCCcCCCCC----cccccCCCC
Q 044005 115 NKLHGS---------ENLKFLSTVDLSKNKFSSS----MPNSLR----KVKPLLSLGFALNYLSGVI----APSIGSLSN 173 (248)
Q Consensus 115 n~l~~~---------~~~~~L~~L~ls~n~l~~~----~~~~~~----~l~~L~~L~l~~n~l~~~~----~~~~~~l~~ 173 (248)
|.++.. .....++.++++.|.+... ++..+. ...++++|.+.+|.++... ...+.....
T Consensus 154 c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~ 233 (478)
T KOG4308|consen 154 CSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGES 233 (478)
T ss_pred ccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccch
Confidence 555443 2244455555555554211 112222 2445566666665554211 112222233
Q ss_pred -CcEEEecCcccCcc----hhhhhcCC-CCCCEEEccCCccCcc----ccccccCCCCCcEEeccCCCCC
Q 044005 174 -LKGLYLYSNRLSRS----IRAKIGNL-MQLTELEMDNNKLFGQ----IPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 174 -L~~L~l~~n~i~~~----~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
+..+++..|.+.+. ....+..+ ..++++++..|.+++. +...+..++.++++.++.|.+.
T Consensus 234 ~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 234 LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44455556655422 11222333 4456666666666542 3344445566666666666654
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.91 E-value=0.013 Score=28.49 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=12.3
Q ss_pred cEEEEeeCCCccccccCcchh
Q 044005 35 RVISINLNTIGLKVRFTNSHS 55 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~ 55 (248)
+|++||+++|.++ .+|..++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3666777777666 5555544
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.73 E-value=0.0078 Score=53.44 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=26.0
Q ss_pred CCCCCcEEEccCCc-cCCC------CCCCCccEEEcCCCc-cCCC-CchhhcCCCCcceEEeeCCcC
Q 044005 103 LLTHLKHLHIDMNK-LHGS------ENLKFLSTVDLSKNK-FSSS-MPNSLRKVKPLLSLGFALNYL 160 (248)
Q Consensus 103 ~l~~L~~L~l~~n~-l~~~------~~~~~L~~L~ls~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l 160 (248)
.+++|+.|+++.+. ++.. ..+++|++|.+.+|. ++.. +......++.|++|+++++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34455555555554 3333 234455555544444 3322 112223345555555554443
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.68 E-value=0.00066 Score=60.46 Aligned_cols=163 Identities=25% Similarity=0.228 Sum_probs=101.9
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhh-hceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEE
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHIL-IKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLH 111 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l-~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~ 111 (248)
...|..|++++|.+.+.....++ ..+... ..+++|++..|.+ +..- ...+...+.....++.++
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~---~~l~~~~~~l~~L~l~~c~l---~~~g---------~~~l~~~L~~~~~l~~l~ 178 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLC---EGLRLPQCLLQTLELVSCSL---TSEG---------AAPLAAVLEKNEHLTELD 178 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHH---hhcccchHHHHHHHhhcccc---cccc---------hHHHHHHHhcccchhHHH
Confidence 34788899999999866555555 232222 2467777777777 2211 112344555567777788
Q ss_pred ccCCccCCC---------C----CCCCccEEEcCCCccCCCC----chhhcCCCC-cceEEeeCCcCCCC----Cccccc
Q 044005 112 IDMNKLHGS---------E----NLKFLSTVDLSKNKFSSSM----PNSLRKVKP-LLSLGFALNYLSGV----IAPSIG 169 (248)
Q Consensus 112 l~~n~l~~~---------~----~~~~L~~L~ls~n~l~~~~----~~~~~~l~~-L~~L~l~~n~l~~~----~~~~~~ 169 (248)
++.|.+... . ...++++|.+++|.++... ...+...++ +..+++.+|.+... ..+.+.
T Consensus 179 l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~ 258 (478)
T KOG4308|consen 179 LSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLS 258 (478)
T ss_pred HHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhc
Confidence 888877433 2 3456788888888766321 123333444 66688888877633 233444
Q ss_pred CC-CCCcEEEecCcccCcc----hhhhhcCCCCCCEEEccCCccCc
Q 044005 170 SL-SNLKGLYLYSNRLSRS----IRAKIGNLMQLTELEMDNNKLFG 210 (248)
Q Consensus 170 ~l-~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~ 210 (248)
.+ ..+++++++.|.|... +...+..+..++++.+..|.+.+
T Consensus 259 ~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 259 VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44 6778888888888543 34455566788888888887775
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=0.018 Score=44.96 Aligned_cols=82 Identities=21% Similarity=0.167 Sum_probs=54.2
Q ss_pred CccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCC-cccc-cCCCCCcEEEecCc-ccCcchhhhhcCCCCCCEE
Q 044005 125 FLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVI-APSI-GSLSNLKGLYLYSN-RLSRSIRAKIGNLMQLTEL 201 (248)
Q Consensus 125 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~-~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L 201 (248)
.++.++.+++.|..+--..+..+++++.|.+.+|.--+.- -.-+ +-.++|+.|++++| +|+......+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3677777777776555566777788888877777543210 0111 13478889999877 4565556677888888888
Q ss_pred EccCC
Q 044005 202 EMDNN 206 (248)
Q Consensus 202 ~L~~n 206 (248)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77653
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.51 E-value=0.065 Score=47.56 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=5.8
Q ss_pred CCCCcEEeccCC
Q 044005 219 FTSLNRVHLEQN 230 (248)
Q Consensus 219 l~~L~~L~l~~n 230 (248)
+++|++|+++++
T Consensus 294 ~~~L~~L~l~~c 305 (482)
T KOG1947|consen 294 CPSLRELDLSGC 305 (482)
T ss_pred cCcccEEeeecC
Confidence 444555555544
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.39 E-value=0.088 Score=23.77 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=4.5
Q ss_pred CCcEEeccCCCC
Q 044005 221 SLNRVHLEQNHL 232 (248)
Q Consensus 221 ~L~~L~l~~n~~ 232 (248)
+|+.|++++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344555555544
No 76
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.58 E-value=0.022 Score=49.14 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=18.6
Q ss_pred CCCCEEEccCCccC-ccccccccCCCCCcEEeccCC
Q 044005 196 MQLTELEMDNNKLF-GQIPKSLRNFTSLNRVHLEQN 230 (248)
Q Consensus 196 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n 230 (248)
..|+.+.+++++.+ +...+.+..+++|+.+++..+
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 34555555555433 233344555666666666654
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.49 E-value=0.063 Score=26.52 Aligned_cols=22 Identities=5% Similarity=0.061 Sum_probs=14.5
Q ss_pred CcEEEEeeCCCccccccCcchh
Q 044005 34 KRVISINLNTIGLKVRFTNSHS 55 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~ 55 (248)
++|++|+|++|.+++..+..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4688899999988876655554
No 78
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.45 E-value=0.16 Score=43.98 Aligned_cols=127 Identities=16% Similarity=0.108 Sum_probs=82.9
Q ss_pred ccCCCCCcEEEccCCc-cCCC------CCCCCccEEEcCCCccCC--CCchhhcCCCCcceEEeeCCcCCCCC-----cc
Q 044005 101 IGLLTHLKHLHIDMNK-LHGS------ENLKFLSTVDLSKNKFSS--SMPNSLRKVKPLLSLGFALNYLSGVI-----AP 166 (248)
Q Consensus 101 ~~~l~~L~~L~l~~n~-l~~~------~~~~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~ 166 (248)
..+..+|+.|.+.+++ ++.. .+.+.|+.+++.++.... .+...-.+++.|+.+.++++...... ..
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 3567899999999886 3322 667889999998887531 23333356788999999877543221 12
Q ss_pred cccCCCCCcEEEecCcccC-cchhhhhcCCCCCCEEEccCCcc-Ccc-ccccccCCCCCcEEec
Q 044005 167 SIGSLSNLKGLYLYSNRLS-RSIRAKIGNLMQLTELEMDNNKL-FGQ-IPKSLRNFTSLNRVHL 227 (248)
Q Consensus 167 ~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l-~~~-~~~~l~~l~~L~~L~l 227 (248)
.-..+..|..+.+.+++.. ......+..+++|+.+++-+++- +.. +..+-.++|+++...+
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 2234567888889988763 34456778889999998888743 222 2233345777765543
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.67 E-value=0.079 Score=41.44 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=55.9
Q ss_pred CcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCc-chhhhhc-CCCCCCEEEccCC-ccCccccccccCCCCCcEE
Q 044005 149 PLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSR-SIRAKIG-NLMQLTELEMDNN-KLFGQIPKSLRNFTSLNRV 225 (248)
Q Consensus 149 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L 225 (248)
.++.++.++..+....-..+..++.++.|.+..|.--+ .--..++ -.++|+.|++++| .|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 47888888888876656677778888888888775421 1111122 3468899999977 4776666667778888888
Q ss_pred eccC
Q 044005 226 HLEQ 229 (248)
Q Consensus 226 ~l~~ 229 (248)
.++.
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7765
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.45 E-value=0.0053 Score=49.01 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=28.6
Q ss_pred ccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 168 IGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 168 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
++.+..|..++++.|++. ..|..++....++.+++-.|..+ ..|.+.+..+.+++++...+.+.
T Consensus 61 ~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 333444444444444442 33444444334444444444443 44444455555555555544443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.17 E-value=0.69 Score=23.09 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=7.6
Q ss_pred CCccEEEcCCCccC
Q 044005 124 KFLSTVDLSKNKFS 137 (248)
Q Consensus 124 ~~L~~L~ls~n~l~ 137 (248)
++|++|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.17 E-value=0.69 Score=23.09 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=7.6
Q ss_pred CCccEEEcCCCccC
Q 044005 124 KFLSTVDLSKNKFS 137 (248)
Q Consensus 124 ~~L~~L~ls~n~l~ 137 (248)
++|++|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.44 E-value=0.025 Score=45.25 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=56.1
Q ss_pred ccCCCCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcE
Q 044005 101 IGLLTHLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKG 176 (248)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 176 (248)
+...+..+.||++.|++... +.++.+..|+++.|.+. ..|.++.....++.++...|..+ ..|..+++.+.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34455566677777766444 34456677777777776 66777777777777777777777 56677777777777
Q ss_pred EEecCccc
Q 044005 177 LYLYSNRL 184 (248)
Q Consensus 177 L~l~~n~i 184 (248)
++.-.+.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 77777754
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.36 E-value=0.64 Score=23.90 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=15.9
Q ss_pred CcEEEEeeCCCccccccCcchh
Q 044005 34 KRVISINLNTIGLKVRFTNSHS 55 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~ 55 (248)
..|++|||++|.+..+....++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 3688889999888765555554
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.53 E-value=1.6 Score=22.14 Aligned_cols=12 Identities=50% Similarity=0.645 Sum_probs=5.7
Q ss_pred CccEEEcCCCcc
Q 044005 125 FLSTVDLSKNKF 136 (248)
Q Consensus 125 ~L~~L~ls~n~l 136 (248)
+|++|++++|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 344444444444
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.79 E-value=2.3 Score=38.41 Aligned_cols=78 Identities=19% Similarity=0.081 Sum_probs=48.1
Q ss_pred CCCCcEEEEeeCCCccccc-cCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccC--CCCC
Q 044005 31 NSAKRVISINLNTIGLKVR-FTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGL--LTHL 107 (248)
Q Consensus 31 ~~~~~l~~L~l~~~~l~~~-~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~--l~~L 107 (248)
++-+.|..++|++|++... ...++++.-+. |+.|+|++|... - .-...+.+ ...|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apk------lk~L~LS~N~~~---~-------------~~~~el~K~k~l~L 272 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPK------LKTLDLSHNHSK---I-------------SSESELDKLKGLPL 272 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcch------hheeecccchhh---h-------------cchhhhhhhcCCCH
Confidence 4566899999999988531 12234434466 999999998320 0 11122222 2357
Q ss_pred cEEEccCCccCCC------------CCCCCccEEE
Q 044005 108 KHLHIDMNKLHGS------------ENLKFLSTVD 130 (248)
Q Consensus 108 ~~L~l~~n~l~~~------------~~~~~L~~L~ 130 (248)
++|-+.+|.+..- ..+|.|..||
T Consensus 273 eel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 273 EELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 8888899888544 4677777765
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.39 E-value=3.8 Score=20.73 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=9.9
Q ss_pred CCcEEeccCCCCCCCCCC
Q 044005 221 SLNRVHLEQNHLNGNTYE 238 (248)
Q Consensus 221 ~L~~L~l~~n~~~~~~~~ 238 (248)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666665 4444
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=65.21 E-value=1 Score=22.52 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=5.3
Q ss_pred CCCcEEeccCC
Q 044005 220 TSLNRVHLEQN 230 (248)
Q Consensus 220 ~~L~~L~l~~n 230 (248)
++|++|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34445555544
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.18 E-value=5.2 Score=36.25 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCCCcEEEccCCccCCC-------CCCCCccEEEcCCC
Q 044005 104 LTHLKHLHIDMNKLHGS-------ENLKFLSTVDLSKN 134 (248)
Q Consensus 104 l~~L~~L~l~~n~l~~~-------~~~~~L~~L~ls~n 134 (248)
.+.+..+++++|++..+ ...++|++|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555555555433 34455555555555
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.33 E-value=50 Score=29.72 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=17.0
Q ss_pred cEEEEeeCCCccccccCcchh
Q 044005 35 RVISINLNTIGLKVRFTNSHS 55 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~ 55 (248)
.+++++++.|+..+.+|..+.
T Consensus 215 ~lteldls~n~~Kddip~~~n 235 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLN 235 (553)
T ss_pred cccccccccCCCCccchhHHH
Confidence 689999999998887776554
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.96 E-value=1.6e+02 Score=26.70 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=29.3
Q ss_pred CccEEEcCCCccCCCCchh---hcCCCCcceEEeeCCcCCCC----CcccccCCCCCcEEEecCccc
Q 044005 125 FLSTVDLSKNKFSSSMPNS---LRKVKPLLSLGFALNYLSGV----IAPSIGSLSNLKGLYLYSNRL 184 (248)
Q Consensus 125 ~L~~L~ls~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i 184 (248)
-+..+.++.+......... ...-+.+.+|++++|..... +|........+..+..+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 3556666666655322221 22334567777777766522 233333344455554444433
Done!