Query 044005
Match_columns 248
No_of_seqs 163 out of 1786
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 18:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 5.8E-32 2E-36 226.8 11.3 216 12-239 23-287 (313)
2 4fcg_A Uncharacterized protein 100.0 2.9E-29 1E-33 211.7 11.7 224 9-247 43-304 (328)
3 3rgz_A Protein brassinosteroid 100.0 2.3E-28 8E-33 227.5 13.4 227 1-240 20-289 (768)
4 4eco_A Uncharacterized protein 100.0 5.1E-29 1.7E-33 227.5 6.2 210 13-233 57-366 (636)
5 3rgz_A Protein brassinosteroid 99.9 1.2E-26 4.2E-31 215.9 14.9 205 33-247 417-707 (768)
6 4ecn_A Leucine-rich repeat pro 99.9 3.1E-27 1.1E-31 221.1 9.4 208 26-245 315-619 (876)
7 1ogq_A PGIP-2, polygalacturona 99.9 9.5E-27 3.2E-31 195.1 10.2 188 33-232 75-303 (313)
8 2o6q_A Variable lymphocyte rec 99.9 5.1E-25 1.7E-29 180.7 17.6 202 23-234 5-219 (270)
9 2z66_A Variable lymphocyte rec 99.9 1.1E-25 3.6E-30 187.8 13.3 220 20-247 4-251 (306)
10 1ozn_A Reticulon 4 receptor; N 99.9 3.3E-24 1.1E-28 177.1 15.6 195 33-234 31-239 (285)
11 3v47_A TOLL-like receptor 5B a 99.9 2.8E-24 9.5E-29 188.3 15.3 120 34-163 30-169 (455)
12 3zyi_A Leucine-rich repeat-con 99.9 1.8E-23 6.1E-28 183.5 18.2 205 34-247 75-293 (452)
13 3v47_A TOLL-like receptor 5B a 99.9 7.4E-24 2.5E-28 185.6 15.3 123 125-247 276-398 (455)
14 4fcg_A Uncharacterized protein 99.9 6.7E-24 2.3E-28 178.9 13.1 188 33-233 103-314 (328)
15 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-23 4.5E-28 177.1 13.7 215 23-243 33-287 (332)
16 2z80_A TOLL-like receptor 2, v 99.9 3E-24 1E-28 182.5 9.8 226 13-247 20-304 (353)
17 1xku_A Decorin; proteoglycan, 99.9 1.1E-22 3.9E-27 171.2 19.2 207 22-242 30-285 (330)
18 3zyj_A Leucine-rich repeat-con 99.9 3.8E-23 1.3E-27 180.8 16.5 205 34-247 64-282 (440)
19 1xku_A Decorin; proteoglycan, 99.9 6E-23 2.1E-27 172.9 16.1 206 32-245 74-320 (330)
20 3m19_A Variable lymphocyte rec 99.9 6.3E-23 2.1E-27 166.5 15.6 185 23-235 5-194 (251)
21 2o6q_A Variable lymphocyte rec 99.9 1.3E-22 4.4E-27 166.3 17.1 189 15-210 6-219 (270)
22 1p9a_G Platelet glycoprotein I 99.9 1.6E-22 5.4E-27 167.6 16.3 185 31-243 7-194 (290)
23 2id5_A Lingo-1, leucine rich r 99.9 4.9E-23 1.7E-27 181.6 13.7 203 35-244 57-296 (477)
24 1ozn_A Reticulon 4 receptor; N 99.9 1E-22 3.6E-27 168.0 14.4 203 32-242 54-270 (285)
25 3oja_B Anopheles plasmodium-re 99.9 7.8E-23 2.7E-27 185.3 13.8 122 34-162 51-185 (597)
26 3o6n_A APL1; leucine-rich repe 99.9 1.1E-22 3.8E-27 175.0 13.6 121 34-162 45-179 (390)
27 3rfs_A Internalin B, repeat mo 99.9 7E-22 2.4E-26 162.2 17.3 174 33-233 40-218 (272)
28 3t6q_A CD180 antigen; protein- 99.9 1.9E-22 6.6E-27 182.6 14.4 147 98-244 369-524 (606)
29 2z62_A TOLL-like receptor 4, v 99.9 2.4E-22 8.1E-27 165.1 13.1 195 34-236 28-240 (276)
30 2z66_A Variable lymphocyte rec 99.9 9.9E-23 3.4E-27 169.7 10.5 197 32-235 50-263 (306)
31 3t6q_A CD180 antigen; protein- 99.9 4.9E-22 1.7E-26 180.0 14.5 203 34-247 278-503 (606)
32 2xwt_C Thyrotropin receptor; s 99.9 1.6E-22 5.4E-27 162.8 10.0 205 16-246 3-231 (239)
33 2id5_A Lingo-1, leucine rich r 99.9 1.2E-21 4.1E-26 172.8 16.1 203 34-246 32-250 (477)
34 1wwl_A Monocyte differentiatio 99.9 1.4E-22 4.7E-27 169.6 8.9 190 33-234 94-310 (312)
35 3zyi_A Leucine-rich repeat-con 99.9 1.4E-21 4.7E-26 171.4 15.0 192 33-233 98-303 (452)
36 3zyj_A Leucine-rich repeat-con 99.9 1.4E-21 4.7E-26 170.9 14.6 192 33-233 87-292 (440)
37 3oja_A Leucine-rich immune mol 99.9 3.1E-22 1.1E-26 177.3 10.6 199 33-247 33-240 (487)
38 1ziw_A TOLL-like receptor 3; i 99.9 4.2E-21 1.4E-25 176.1 18.1 204 34-247 25-299 (680)
39 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-21 4.8E-26 183.6 15.0 128 23-161 14-161 (844)
40 3o6n_A APL1; leucine-rich repe 99.9 2.5E-21 8.4E-26 166.6 15.0 90 144-235 244-333 (390)
41 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-21 3.6E-26 165.4 12.3 213 32-247 76-323 (332)
42 3rfs_A Internalin B, repeat mo 99.9 1.4E-20 4.8E-25 154.4 18.3 184 37-247 22-208 (272)
43 1p9a_G Platelet glycoprotein I 99.9 3.7E-21 1.3E-25 159.4 14.8 175 34-234 31-209 (290)
44 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-22 1.2E-26 167.4 8.7 199 33-247 33-240 (317)
45 4eco_A Uncharacterized protein 99.9 9.8E-22 3.3E-26 179.4 12.2 210 33-247 272-569 (636)
46 3oja_B Anopheles plasmodium-re 99.9 3E-21 1E-25 175.0 15.2 195 33-236 74-340 (597)
47 4glp_A Monocyte differentiatio 99.9 3.3E-22 1.1E-26 167.1 7.8 183 36-234 93-308 (310)
48 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-21 4.3E-26 174.3 11.7 80 32-118 43-128 (520)
49 2o6s_A Variable lymphocyte rec 99.9 3.8E-21 1.3E-25 151.5 13.1 180 21-244 5-189 (208)
50 3vq2_A TLR4, TOLL-like recepto 99.9 1E-21 3.5E-26 177.9 11.3 194 33-234 349-559 (606)
51 1ziw_A TOLL-like receptor 3; i 99.9 5.7E-21 2E-25 175.2 15.0 195 33-234 48-310 (680)
52 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-21 5.4E-26 176.6 10.8 176 67-244 352-544 (606)
53 2z80_A TOLL-like receptor 2, v 99.9 9.8E-22 3.4E-26 167.0 8.7 198 32-237 74-318 (353)
54 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.6E-21 1.9E-25 171.9 13.2 85 34-119 52-160 (562)
55 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-20 3.6E-25 177.6 15.6 100 148-247 266-365 (844)
56 2z81_A CD282 antigen, TOLL-lik 99.8 5.2E-21 1.8E-25 171.2 12.5 177 34-234 26-210 (549)
57 1h6u_A Internalin H; cell adhe 99.8 5.3E-20 1.8E-24 153.7 16.7 183 33-234 40-231 (308)
58 1wwl_A Monocyte differentiatio 99.8 1.3E-21 4.5E-26 163.6 6.0 161 66-233 96-287 (312)
59 2z63_A TOLL-like receptor 4, v 99.8 8.5E-21 2.9E-25 170.4 11.4 160 87-246 353-520 (570)
60 2z62_A TOLL-like receptor 4, v 99.8 5E-20 1.7E-24 151.2 14.8 198 39-247 12-227 (276)
61 2z63_A TOLL-like receptor 4, v 99.8 8.3E-21 2.9E-25 170.5 10.8 197 32-238 323-536 (570)
62 3m19_A Variable lymphocyte rec 99.8 2.2E-19 7.6E-24 145.5 17.7 162 67-247 16-182 (251)
63 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.5E-20 1.2E-24 166.7 14.2 118 35-162 32-160 (562)
64 4ecn_A Leucine-rich repeat pro 99.8 6.6E-20 2.3E-24 171.7 16.4 156 87-247 601-809 (876)
65 3o53_A Protein LRIM1, AGAP0063 99.8 7.5E-22 2.6E-26 165.5 2.8 192 32-240 56-258 (317)
66 2z7x_B TOLL-like receptor 1, v 99.8 1.7E-19 5.7E-24 160.6 17.5 196 35-235 248-483 (520)
67 4fmz_A Internalin; leucine ric 99.8 1.5E-19 5.1E-24 152.9 15.7 190 32-237 130-328 (347)
68 1h6u_A Internalin H; cell adhe 99.8 9.5E-20 3.3E-24 152.1 14.1 162 32-210 61-231 (308)
69 4fmz_A Internalin; leucine ric 99.8 1.5E-19 5E-24 152.9 15.3 135 101-243 173-310 (347)
70 3cvr_A Invasion plasmid antige 99.8 4.1E-21 1.4E-25 172.4 5.9 203 12-242 32-252 (571)
71 3oja_A Leucine-rich immune mol 99.8 4.4E-21 1.5E-25 169.8 6.0 193 32-241 56-259 (487)
72 1o6v_A Internalin A; bacterial 99.8 3.2E-19 1.1E-23 156.9 17.6 183 33-237 176-370 (466)
73 1h6t_A Internalin B; cell adhe 99.8 1.2E-19 4.1E-24 150.3 13.0 171 33-238 45-218 (291)
74 2z81_A CD282 antigen, TOLL-lik 99.8 7.1E-20 2.4E-24 163.9 12.0 77 170-247 332-413 (549)
75 4ezg_A Putative uncharacterize 99.8 3E-19 1E-23 139.6 13.1 150 57-234 42-195 (197)
76 2ca6_A RAN GTPase-activating p 99.8 9.6E-22 3.3E-26 169.0 -2.5 132 105-236 159-319 (386)
77 1o6v_A Internalin A; bacterial 99.8 6.2E-19 2.1E-23 155.1 14.8 184 32-234 197-389 (466)
78 2ast_B S-phase kinase-associat 99.8 1.2E-20 4E-25 158.9 3.6 209 24-246 38-274 (336)
79 3bz5_A Internalin-J, INLJ; leu 99.8 1.6E-18 5.5E-23 152.2 17.0 189 33-244 41-257 (457)
80 2o6s_A Variable lymphocyte rec 99.8 3E-19 1E-23 140.5 10.5 159 33-221 27-190 (208)
81 1m9s_A Internalin B; cell inva 99.8 9.8E-19 3.3E-23 158.3 14.4 174 33-241 42-218 (605)
82 3bz5_A Internalin-J, INLJ; leu 99.8 4.9E-18 1.7E-22 149.2 18.2 175 47-246 31-235 (457)
83 4g8a_A TOLL-like receptor 4; l 99.8 5.8E-19 2E-23 159.9 12.7 173 35-231 53-235 (635)
84 1jl5_A Outer protein YOPM; leu 99.8 3.5E-18 1.2E-22 150.0 16.6 184 35-233 35-250 (454)
85 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-18 5.6E-23 137.8 13.2 129 106-234 33-167 (220)
86 4glp_A Monocyte differentiatio 99.8 1.8E-18 6.2E-23 144.3 13.6 201 35-243 65-296 (310)
87 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-18 3.8E-23 158.0 12.7 175 39-239 36-220 (635)
88 2ca6_A RAN GTPase-activating p 99.8 5E-20 1.7E-24 158.3 3.2 205 33-240 31-298 (386)
89 2v9t_B SLIT homolog 2 protein 99.8 3.9E-18 1.4E-22 135.6 13.9 129 105-233 32-165 (220)
90 2ast_B S-phase kinase-associat 99.8 1.7E-20 5.9E-25 157.9 -0.5 144 87-230 124-282 (336)
91 3e6j_A Variable lymphocyte rec 99.8 6.6E-18 2.3E-22 135.1 14.1 111 98-209 57-172 (229)
92 2xot_A Amphoterin-induced prot 99.8 1.4E-18 4.8E-23 148.1 10.1 171 37-233 21-202 (361)
93 2xwt_C Thyrotropin receptor; s 99.8 1.6E-18 5.5E-23 139.3 9.9 172 32-230 53-236 (239)
94 3e6j_A Variable lymphocyte rec 99.8 2E-17 7E-22 132.2 15.6 138 96-236 33-175 (229)
95 1jl5_A Outer protein YOPM; leu 99.8 2.7E-17 9.2E-22 144.3 17.6 176 33-233 90-270 (454)
96 1xeu_A Internalin C; cellular 99.8 2.4E-18 8.1E-23 140.5 10.1 165 35-235 20-187 (263)
97 1h6t_A Internalin B; cell adhe 99.8 3.8E-17 1.3E-21 135.3 16.6 173 38-247 28-203 (291)
98 3goz_A Leucine-rich repeat-con 99.7 1.2E-18 4.1E-23 148.5 6.5 197 34-233 22-266 (362)
99 4ezg_A Putative uncharacterize 99.7 1.5E-17 5.2E-22 129.8 11.6 147 33-210 43-195 (197)
100 4ay9_X Follicle-stimulating ho 99.7 9.2E-18 3.1E-22 142.4 11.0 211 21-246 7-248 (350)
101 3goz_A Leucine-rich repeat-con 99.7 1.3E-18 4.4E-23 148.3 5.2 200 33-235 49-299 (362)
102 1z7x_W Ribonuclease inhibitor; 99.7 5.7E-20 1.9E-24 161.0 -3.4 149 87-235 205-413 (461)
103 1dce_A Protein (RAB geranylger 99.7 1.4E-20 4.8E-25 169.3 -7.7 189 33-237 348-550 (567)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-16 3.8E-21 127.1 14.5 140 108-247 14-156 (220)
105 4b8c_D Glucose-repressible alc 99.7 1.9E-18 6.4E-23 159.8 4.2 209 11-243 150-364 (727)
106 2v9t_B SLIT homolog 2 protein 99.7 1.3E-16 4.4E-21 126.8 14.2 140 108-247 14-155 (220)
107 3g06_A SSPH2 (leucine-rich rep 99.7 2.1E-16 7.3E-21 143.3 17.3 66 172-246 221-286 (622)
108 1m9s_A Internalin B; cell inva 99.7 1.2E-16 4.1E-21 144.7 14.2 147 32-211 63-212 (605)
109 1z7x_W Ribonuclease inhibitor; 99.7 7E-19 2.4E-23 154.1 -0.8 148 87-234 262-441 (461)
110 3g06_A SSPH2 (leucine-rich rep 99.7 2.1E-16 7E-21 143.4 15.3 121 105-238 181-302 (622)
111 2xot_A Amphoterin-induced prot 99.7 6.3E-17 2.2E-21 137.9 11.0 150 68-236 21-179 (361)
112 1w8a_A SLIT protein; signaling 99.7 2.7E-16 9.2E-21 122.3 12.6 106 106-211 30-141 (192)
113 2ell_A Acidic leucine-rich nuc 99.7 3.7E-16 1.3E-20 118.7 10.9 114 123-239 48-165 (168)
114 1xeu_A Internalin C; cellular 99.7 4.2E-16 1.4E-20 127.1 11.8 152 67-247 21-175 (263)
115 2ell_A Acidic leucine-rich nuc 99.7 6.3E-16 2.2E-20 117.4 11.6 133 66-214 25-164 (168)
116 1w8a_A SLIT protein; signaling 99.7 3.6E-16 1.2E-20 121.6 9.2 127 108-234 11-140 (192)
117 3cvr_A Invasion plasmid antige 99.6 1.9E-15 6.6E-20 135.7 15.0 161 66-247 60-233 (571)
118 2wfh_A SLIT homolog 2 protein 99.6 2.2E-15 7.4E-20 117.3 13.4 107 125-232 32-138 (193)
119 2o6r_A Variable lymphocyte rec 99.6 2.1E-15 7.2E-20 115.5 13.0 105 105-209 28-137 (177)
120 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6.2E-20 112.6 10.0 102 125-228 43-148 (149)
121 2je0_A Acidic leucine-rich nuc 99.6 1.6E-15 5.5E-20 112.8 9.7 125 65-204 17-148 (149)
122 1dce_A Protein (RAB geranylger 99.6 4E-16 1.4E-20 140.4 4.6 119 106-227 442-567 (567)
123 4ay9_X Follicle-stimulating ho 99.6 3.5E-15 1.2E-19 126.5 9.8 183 37-246 12-228 (350)
124 4b8c_D Glucose-repressible alc 99.6 1.9E-16 6.5E-21 146.4 1.7 155 34-214 191-359 (727)
125 1a9n_A U2A', U2A'; complex (nu 99.6 4.6E-15 1.6E-19 113.6 8.6 129 100-232 14-152 (176)
126 1ds9_A Outer arm dynein; leuci 99.6 8.3E-17 2.9E-21 125.7 -2.0 163 57-234 10-186 (198)
127 2wfh_A SLIT homolog 2 protein 99.6 3.2E-14 1.1E-18 110.7 12.4 105 105-209 31-139 (193)
128 2o6r_A Variable lymphocyte rec 99.6 6E-14 2E-18 107.3 13.0 130 107-236 9-140 (177)
129 1ds9_A Outer arm dynein; leuci 99.5 2E-16 7E-21 123.5 -4.8 149 33-210 17-186 (198)
130 1a9n_A U2A', U2A'; complex (nu 99.5 7.3E-14 2.5E-18 106.8 9.3 124 67-210 21-154 (176)
131 3g39_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 103.7 10.8 105 106-210 10-116 (170)
132 3sb4_A Hypothetical leucine ri 99.4 3.5E-13 1.2E-17 113.1 10.6 99 147-247 225-324 (329)
133 2r9u_A Variable lymphocyte rec 99.4 5.9E-13 2E-17 101.8 10.6 104 107-210 14-119 (174)
134 3g39_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 99.5 11.2 81 105-185 30-115 (170)
135 3ogk_B Coronatine-insensitive 99.4 7.4E-14 2.5E-18 125.8 2.1 187 33-228 111-326 (592)
136 2r9u_A Variable lymphocyte rec 99.4 3.7E-12 1.3E-16 97.3 11.3 100 67-185 14-118 (174)
137 3ogk_B Coronatine-insensitive 99.4 1E-13 3.5E-18 124.9 3.0 65 139-204 284-350 (592)
138 3un9_A NLR family member X1; l 99.4 2.9E-14 1E-18 121.8 -0.7 162 34-213 72-256 (372)
139 3sb4_A Hypothetical leucine ri 99.4 1.2E-12 4.2E-17 109.8 9.2 103 123-227 225-328 (329)
140 3un9_A NLR family member X1; l 99.3 9.2E-14 3.1E-18 118.8 -0.5 163 66-240 73-259 (372)
141 2p1m_B Transport inhibitor res 99.3 4.1E-13 1.4E-17 120.9 -0.4 116 33-155 104-242 (594)
142 2ifg_A High affinity nerve gro 99.2 3E-11 1E-15 101.9 10.3 100 109-209 12-116 (347)
143 2p1m_B Transport inhibitor res 99.2 1.8E-13 6.2E-18 123.2 -4.0 193 34-234 289-520 (594)
144 2ifg_A High affinity nerve gro 99.1 2E-10 6.8E-15 96.8 9.2 88 96-185 23-116 (347)
145 2ra8_A Uncharacterized protein 99.0 5.2E-10 1.8E-14 95.0 7.4 196 33-236 106-323 (362)
146 4fdw_A Leucine rich hypothetic 99.0 4.8E-09 1.6E-13 90.4 13.2 194 35-243 158-368 (401)
147 2ra8_A Uncharacterized protein 98.8 3.6E-09 1.2E-13 89.9 5.8 170 33-231 138-341 (362)
148 4fdw_A Leucine rich hypothetic 98.8 6.8E-08 2.3E-12 83.2 12.0 132 96-229 171-332 (401)
149 1io0_A Tropomodulin; LRR prote 98.7 6.8E-09 2.3E-13 79.8 3.3 110 99-208 30-163 (185)
150 1io0_A Tropomodulin; LRR prote 98.7 1.6E-08 5.6E-13 77.6 4.7 113 121-233 33-164 (185)
151 3rw6_A Nuclear RNA export fact 98.6 1.9E-08 6.6E-13 81.6 2.3 19 23-41 78-97 (267)
152 3e4g_A ATP synthase subunit S, 98.3 5.4E-07 1.8E-11 68.3 5.2 83 125-207 62-150 (176)
153 3rw6_A Nuclear RNA export fact 98.2 8.5E-07 2.9E-11 71.9 4.6 81 145-226 167-257 (267)
154 3e4g_A ATP synthase subunit S, 98.2 7.7E-07 2.6E-11 67.4 4.1 82 149-230 62-149 (176)
155 1pgv_A TMD-1, tropomodulin TMD 97.8 1.7E-05 5.8E-10 61.1 3.9 89 143-231 65-168 (197)
156 4fs7_A Uncharacterized protein 97.7 0.00023 7.7E-09 60.7 9.8 85 143-230 292-376 (394)
157 4fs7_A Uncharacterized protein 97.7 0.00022 7.7E-09 60.7 9.8 124 97-225 268-393 (394)
158 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00017 5.6E-09 55.6 5.6 86 123-208 69-169 (197)
159 4h09_A Hypothetical leucine ri 97.4 0.0022 7.6E-08 54.1 12.0 127 101-230 213-343 (379)
160 4gt6_A Cell surface protein; l 97.3 0.0012 4E-08 56.3 9.9 125 100-230 260-388 (394)
161 4gt6_A Cell surface protein; l 97.2 0.0065 2.2E-07 51.6 13.5 108 121-232 262-369 (394)
162 4h09_A Hypothetical leucine ri 96.9 0.017 5.9E-07 48.5 12.8 121 123-247 216-336 (379)
163 3rfe_A Platelet glycoprotein I 96.2 0.014 4.6E-07 41.6 6.6 52 109-160 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.1 0.012 4.1E-07 41.9 5.7 55 128-184 12-67 (130)
165 2lz0_A Uncharacterized protein 34.7 42 0.0014 22.0 3.6 46 160-206 8-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5.8e-32 Score=226.83 Aligned_cols=216 Identities=25% Similarity=0.439 Sum_probs=135.9
Q ss_pred ccCCcccCCCC-Cc--cceeeeCCC---CcEEEEeeCCCcccc--ccCcchhHHHHHHHhhhceeEEEecc-ccccccCC
Q 044005 12 LLSLWNLYPIN-AT--NFGIHCNSA---KRVISINLNTIGLKV--RFTNSHSHQFLILHILIKASIYYLAS-YRLKLATP 82 (248)
Q Consensus 12 ~~~~w~~~~~~-~~--~~~~~c~~~---~~l~~L~l~~~~l~~--~~~~~~~~~l~~L~~l~~L~~L~ls~-n~~~~~~~ 82 (248)
..++|.. +.+ |. |.||.|+.. ++|++|+++++.+.+ .+|..++ .++. |++|++++ |.+ .+
T Consensus 23 ~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~-~l~~------L~~L~L~~~n~l---~~ 91 (313)
T 1ogq_A 23 TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPY------LNFLYIGGINNL---VG 91 (313)
T ss_dssp GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGG-GCTT------CSEEEEEEETTE---ES
T ss_pred cccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHh-CCCC------CCeeeCCCCCcc---cc
Confidence 7899975 445 77 999999854 799999999999998 8898888 8888 88888884 777 55
Q ss_pred CCCc-----------CCCCCcccccCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcC
Q 044005 83 PISS-----------SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRK 146 (248)
Q Consensus 83 ~~~~-----------~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~ 146 (248)
.+|. ++++|.+.+.+|..+..+++|++|++++|.+++. ..+++|++|++++|.+++.+|..+..
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 4443 5556666666666666666666666666666532 44556666666666665555555555
Q ss_pred CC-CcceEEeeCCcCCCCCcccc-----------------------cCCCCCcEEEecCcccCcchhhhhcCCCCCCEEE
Q 044005 147 VK-PLLSLGFALNYLSGVIAPSI-----------------------GSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELE 202 (248)
Q Consensus 147 l~-~L~~L~l~~n~l~~~~~~~~-----------------------~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 202 (248)
++ +|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+. +..+++|++|+
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~ 250 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLD 250 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEE
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEE
Confidence 55 55666666655554444444 4444455555555544433332 34445555555
Q ss_pred ccCCccCccccccccCCCCCcEEeccCCCCCCCCCCC
Q 044005 203 MDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEH 239 (248)
Q Consensus 203 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 239 (248)
+++|.+++.+|..+..+++|++|++++|.+++.+|..
T Consensus 251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 5555555555555555555555555555555555443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.9e-29 Score=211.71 Aligned_cols=224 Identities=19% Similarity=0.231 Sum_probs=196.1
Q ss_pred CccccCCcc---cCCCC-CccceeeeC---------CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccc
Q 044005 9 EPLLLSLWN---LYPIN-ATNFGIHCN---------SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASY 75 (248)
Q Consensus 9 ~~~~~~~w~---~~~~~-~~~~~~~c~---------~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n 75 (248)
+.+..+.|. ....+ |.|.|+.|. ..++++.|++++|.+. .+|..++ .++. |++|++++|
T Consensus 43 ~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~-~l~~------L~~L~L~~n 114 (328)
T 4fcg_A 43 RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF-RLSH------LQHMTIDAA 114 (328)
T ss_dssp CTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG-GGTT------CSEEEEESS
T ss_pred chhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh-hCCC------CCEEECCCC
Confidence 344567885 33444 999999995 2468999999999998 7888898 8888 999999999
Q ss_pred cccccCCCCCc-----------CCCCCcccccCCccccCCCCCcEEEccCCccCCC-----C---------CCCCccEEE
Q 044005 76 RLKLATPPISS-----------SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----E---------NLKFLSTVD 130 (248)
Q Consensus 76 ~~~~~~~~~~~-----------~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~---------~~~~L~~L~ 130 (248)
.+ . .+|. ++++|.+. .+|..+..+++|++|++++|.+.+. . .+++|++|+
T Consensus 115 ~l---~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~ 189 (328)
T 4fcg_A 115 GL---M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189 (328)
T ss_dssp CC---C-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEE
T ss_pred Cc---c-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEE
Confidence 99 4 4443 88889998 7899999999999999999876443 1 288999999
Q ss_pred cCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCc
Q 044005 131 LSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFG 210 (248)
Q Consensus 131 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (248)
+++|.++ .+|..+..+++|++|++++|.+.+ +|+.+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+
T Consensus 190 L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 190 LEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp EEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred CcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 9999998 888889999999999999999994 66678999999999999999988899999999999999999999998
Q ss_pred cccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 211 QIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 211 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
.+|..+..+++|++|++++|.+.+.+|+.++.+..++
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 9999999999999999999999999999999888764
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=2.3e-28 Score=227.46 Aligned_cols=227 Identities=24% Similarity=0.304 Sum_probs=132.7
Q ss_pred CCCCCCCCCccccCCcccCCCC-CccceeeeCCCCcEEEEeeCCCccccc---cCcchhHHHHHHH--------------
Q 044005 1 MDNKPSKPEPLLLSLWNLYPIN-ATNFGIHCNSAKRVISINLNTIGLKVR---FTNSHSHQFLILH-------------- 62 (248)
Q Consensus 1 ~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~c~~~~~l~~L~l~~~~l~~~---~~~~~~~~l~~L~-------------- 62 (248)
||...++|. .+++|.. +.+ |.|.||+|+ .++++.|+|+++.+.+. +++.+. .++.|+
T Consensus 20 ~k~~~~~~~--~l~~W~~-~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~-~L~~L~~l~~~~~~~~~l~~ 94 (768)
T 3rgz_A 20 FKDVLPDKN--LLPDWSS-NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHINGSVS 94 (768)
T ss_dssp HHTTCSCTT--SSTTCCT-TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTT-TCTTCCEEECTTSCEEECCC
T ss_pred HHhhCCCcc--cccCCCC-CCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHh-ccCcccccCCcCCCcCCCch
Confidence 456666665 8899983 566 999999998 78999999999998876 555444 343311
Q ss_pred ---hhhceeEEEeccccccccCCCCCc-------------CCCCCcccccCCccc-cCCCCCcEEEccCCccCCC-----
Q 044005 63 ---ILIKASIYYLASYRLKLATPPISS-------------SLGNNRLSGVIPPEI-GLLTHLKHLHIDMNKLHGS----- 120 (248)
Q Consensus 63 ---~l~~L~~L~ls~n~~~~~~~~~~~-------------~L~~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~----- 120 (248)
.+.+|++|||++|.+ .+.+|. ++++|.+.+.+|..+ .++++|++|++++|.+++.
T Consensus 95 ~~~~l~~L~~L~Ls~n~l---~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSL---SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCTTCCEEECCSSEE---EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred hhccCCCCCEEECCCCcC---CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 122477777777776 333222 666666666555544 5666666666666665432
Q ss_pred ---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCC
Q 044005 121 ---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQ 197 (248)
Q Consensus 121 ---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 197 (248)
..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.+|. ++.+++|++|++++|.+.+.+|..+..+++
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred hhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence 3444555555555555433322 4455566666666655544443 555666666666666665555555555555
Q ss_pred CCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCC
Q 044005 198 LTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHI 240 (248)
Q Consensus 198 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i 240 (248)
|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCS
T ss_pred CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHH
Confidence 555555555555433322 34444444444444444444433
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5.1e-29 Score=227.45 Aligned_cols=210 Identities=20% Similarity=0.271 Sum_probs=131.1
Q ss_pred cCCcccCCCC-Ccc---ceeeeCCCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccC-------
Q 044005 13 LSLWNLYPIN-ATN---FGIHCNSAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLAT------- 81 (248)
Q Consensus 13 ~~~w~~~~~~-~~~---~~~~c~~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~------- 81 (248)
.++|.. +.+ |.| .||+|+..++|+.|+|+++++.+.+|+.++ .++. |++|+|++|.+....
T Consensus 57 ~~~W~~-~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~-~L~~------L~~L~Ls~N~~~~~~~~~~~~~ 128 (636)
T 4eco_A 57 GANWNF-NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTE------LEVLALGSHGEKVNERLFGPKG 128 (636)
T ss_dssp -CCCCC-SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGG-GCTT------CCEEESCCGGGGGTCCSBSTTS
T ss_pred CCCCCC-CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHh-cCcc------ceEEECcCCccccCCccccccc
Confidence 458986 456 999 999998778999999999999999999999 9999 999999999651000
Q ss_pred -----------------------CCCCc--------------------------------CCCCCcccccCCccccCCCC
Q 044005 82 -----------------------PPISS--------------------------------SLGNNRLSGVIPPEIGLLTH 106 (248)
Q Consensus 82 -----------------------~~~~~--------------------------------~L~~~~~~~~~~~~~~~l~~ 106 (248)
+..+. ....|.+++ +|+.++++++
T Consensus 129 ~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~ 207 (636)
T 4eco_A 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTK 207 (636)
T ss_dssp BCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTT
T ss_pred cccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccC
Confidence 00000 011445655 6666666666
Q ss_pred CcEEEccCCccCC------------------C----C--CCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCc-CC
Q 044005 107 LKHLHIDMNKLHG------------------S----E--NLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY-LS 161 (248)
Q Consensus 107 L~~L~l~~n~l~~------------------~----~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~ 161 (248)
|++|++++|.+++ + . .+++|++|++++|.+.+.+|..+..+++|++|++++|. ++
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 6666666666665 3 2 55666666666666665666666666666666666665 55
Q ss_pred C-CCcccccCC------CCCcEEEecCcccCcchhh--hhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCC
Q 044005 162 G-VIAPSIGSL------SNLKGLYLYSNRLSRSIRA--KIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHL 232 (248)
Q Consensus 162 ~-~~~~~~~~l------~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 232 (248)
+ .+|..++.+ ++|++|++++|.++ .+|. .++.+++|++|++++|.+++.+| .+..+++|+.|++++|.+
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEE
T ss_pred cccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc
Confidence 4 445444443 55555555555554 4444 45555555555555555554444 333344444444444433
Q ss_pred C
Q 044005 233 N 233 (248)
Q Consensus 233 ~ 233 (248)
+
T Consensus 366 ~ 366 (636)
T 4eco_A 366 T 366 (636)
T ss_dssp E
T ss_pred c
Confidence 3
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=1.2e-26 Score=215.88 Aligned_cols=205 Identities=25% Similarity=0.343 Sum_probs=128.2
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-----------CCCCCcccccCCccc
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS-----------SLGNNRLSGVIPPEI 101 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~-----------~L~~~~~~~~~~~~~ 101 (248)
+++|+.|++++|.+.+.+|..++ .++. |++|++++|.+ .+.+|. ++++|.+.+.+|..+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~-~l~~------L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLG-SLSK------LRDLKLWLNML---EGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGG-GCTT------CCEEECCSSCC---CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CCCCCEEECcCCcccCcccHHHh-cCCC------CCEEECCCCcc---cCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 34566666666666666666665 5555 66666666666 444443 566666666666666
Q ss_pred cCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccc--------
Q 044005 102 GLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSI-------- 168 (248)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------- 168 (248)
..+++|++|++++|++++. ..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 6666666666666666533 445666666666666665666666666666666666666554444322
Q ss_pred --------------------------------------------------------------cCCCCCcEEEecCcccCc
Q 044005 169 --------------------------------------------------------------GSLSNLKGLYLYSNRLSR 186 (248)
Q Consensus 169 --------------------------------------------------------------~~l~~L~~L~l~~n~i~~ 186 (248)
..+.+|+.|++++|++++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 123456666666666666
Q ss_pred chhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 187 SIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|+.++.+.+|+
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 6666666666666666666666666666666666666666666666666666666665553
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.1e-27 Score=221.11 Aligned_cols=208 Identities=20% Similarity=0.228 Sum_probs=165.4
Q ss_pred ceeeeCCCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEe-ccccccccCCCC--------------------
Q 044005 26 FGIHCNSAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYL-ASYRLKLATPPI-------------------- 84 (248)
Q Consensus 26 ~~~~c~~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~l-s~n~~~~~~~~~-------------------- 84 (248)
.||.|+..++++.|+|+++++.+.+|+.++ .++. |++|+| ++|.+++.....
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~-~L~~------L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~ 387 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTE------LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECGGGG-GCTT------CCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHH
T ss_pred CceEecCCCCEEEEECccCCCCCcCchHHh-cccc------ceEeeecccccccccccccccccccccchhHHHHHHHhh
Confidence 999998778999999999999999999999 9999 999999 888763320000
Q ss_pred ------------------------Cc---------------CC--CCCcccccCCccccCCCCCcEEEccCCccCC----
Q 044005 85 ------------------------SS---------------SL--GNNRLSGVIPPEIGLLTHLKHLHIDMNKLHG---- 119 (248)
Q Consensus 85 ------------------------~~---------------~L--~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---- 119 (248)
|. .+ ..|.+++ +|..+.++++|++|++++|.+++
T Consensus 388 ~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~ 466 (876)
T 4ecn_A 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIA 466 (876)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred hhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccc
Confidence 00 11 2366766 78889999999999999998887
Q ss_pred --------------C----C--CCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCc-CCC-CCcccccCC------
Q 044005 120 --------------S----E--NLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY-LSG-VIAPSIGSL------ 171 (248)
Q Consensus 120 --------------~----~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------ 171 (248)
+ . .+++|++|++++|.+.+.+|..+..+++|++|++++|. +++ .+|..+..+
T Consensus 467 ~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~ 546 (876)
T 4ecn_A 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546 (876)
T ss_dssp SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTT
T ss_pred ccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccc
Confidence 3 3 67889999999998888888888889999999999987 776 566655544
Q ss_pred -CCCcEEEecCcccCcchhh--hhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 044005 172 -SNLKGLYLYSNRLSRSIRA--KIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNF 245 (248)
Q Consensus 172 -~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~ 245 (248)
++|++|++++|.+. .+|. .+..+++|++|++++|.++ .+| .+..+++|+.|++++|.++ .+|..++.+..
T Consensus 547 l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~ 619 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619 (876)
T ss_dssp TTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECT
T ss_pred cCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccc
Confidence 48888888888887 6676 7888888888888888887 666 7777888888888888887 77777766655
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=9.5e-27 Score=195.08 Aligned_cols=188 Identities=23% Similarity=0.328 Sum_probs=139.5
Q ss_pred CCcEEEEeeCC-CccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-----------CCCCCcccccCCcc
Q 044005 33 AKRVISINLNT-IGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS-----------SLGNNRLSGVIPPE 100 (248)
Q Consensus 33 ~~~l~~L~l~~-~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~-----------~L~~~~~~~~~~~~ 100 (248)
+++|++|++++ |.+.+.+|..++ .++. |++|++++|.+ .+.+|. ++++|.+.+.+|..
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~-~l~~------L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIA-KLTQ------LHYLYITHTNV---SGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGG-GCTT------CSEEEEEEECC---EEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred CCCCCeeeCCCCCcccccCChhHh-cCCC------CCEEECcCCee---CCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 45788899985 888888888888 7888 66666666666 333332 55555555555555
Q ss_pred ccCCCCCcEEEccCCccCCC-----CCCC-C-----------------------ccEEEcCCCccCCCCchhhcCCCCcc
Q 044005 101 IGLLTHLKHLHIDMNKLHGS-----ENLK-F-----------------------LSTVDLSKNKFSSSMPNSLRKVKPLL 151 (248)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~-----~~~~-~-----------------------L~~L~ls~n~l~~~~~~~~~~l~~L~ 151 (248)
+..+++|++|++++|.+++. ..++ . |++|++++|.+.+..+..+..+++|+
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCC
Confidence 55555555555555555311 1222 3 66666666666656667777888899
Q ss_pred eEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCC
Q 044005 152 SLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNH 231 (248)
Q Consensus 152 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 231 (248)
+|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|.
T Consensus 225 ~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 999999888855544 788899999999999998889999999999999999999999888876 889999999999997
Q ss_pred C
Q 044005 232 L 232 (248)
Q Consensus 232 ~ 232 (248)
.
T Consensus 303 ~ 303 (313)
T 1ogq_A 303 C 303 (313)
T ss_dssp E
T ss_pred C
Confidence 3
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5.1e-25 Score=180.69 Aligned_cols=202 Identities=22% Similarity=0.290 Sum_probs=125.0
Q ss_pred CccceeeeCCCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCC-CCc-------CCCCCccc
Q 044005 23 ATNFGIHCNSAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPP-ISS-------SLGNNRLS 94 (248)
Q Consensus 23 ~~~~~~~c~~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~-~~~-------~L~~~~~~ 94 (248)
|.|.|+.|....+.+.+++++++++ .+|..+. +. +++|++++|+++.+... +.. ++++|.++
T Consensus 5 C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~~~~---~~------l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 5 CKKDGGVCSCNNNKNSVDCSSKKLT-AIPSNIP---AD------TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp BGGGTCSBEEETTTTEEECTTSCCS-SCCSCCC---TT------CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS
T ss_pred CCCCCCCCEeCCCCCEEEccCCCCC-ccCCCCC---CC------CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC
Confidence 8898888865556788888888887 4666555 46 88888888887222110 000 44555555
Q ss_pred ccCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCccccc
Q 044005 95 GVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIG 169 (248)
Q Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 169 (248)
...+..+..+++|++|++++|.++.+ ..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+.
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 43344456666666666666666544 3455666666666666644444556666666666666666644444456
Q ss_pred CCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCC
Q 044005 170 SLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 170 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 66666666666666655444455666666666666666664444445666666666666666653
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-25 Score=187.76 Aligned_cols=220 Identities=19% Similarity=0.189 Sum_probs=180.0
Q ss_pred CCCCccceeeeCCC----------CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC------C
Q 044005 20 PINATNFGIHCNSA----------KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP------P 83 (248)
Q Consensus 20 ~~~~~~~~~~c~~~----------~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~------~ 83 (248)
.+.|.|.++.|... .++++|++++|.+....+..+. .+++ |++|++++|.++.... .
T Consensus 4 ~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~-~l~~------L~~L~L~~n~l~~~~~~~~~~~~ 76 (306)
T 2z66_A 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD-KLTQ------LTKLSLSSNGLSFKGCCSQSDFG 76 (306)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTT-TCTT------CSEEECCSSCCCEEEEEEHHHHS
T ss_pred CCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhh-cccc------CCEEECCCCccCcccCccccccc
Confidence 34488999998632 3899999999999843334466 8888 9999999999832210 0
Q ss_pred CCc----CCCCCcccccCCccccCCCCCcEEEccCCccCCC------CCCCCccEEEcCCCccCCCCchhhcCCCCcceE
Q 044005 84 ISS----SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS------ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSL 153 (248)
Q Consensus 84 ~~~----~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 153 (248)
.+. ++++|.+. .++..+..+++|++|++++|.+++. ..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 111 88888887 4677788999999999999988654 567889999999999987777788899999999
Q ss_pred EeeCCcCCC-CCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCC
Q 044005 154 GFALNYLSG-VIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHL 232 (248)
Q Consensus 154 ~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 232 (248)
++++|.+.+ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 999999885 4677888999999999999999877788888999999999999999976666788899999999999999
Q ss_pred CCCCCCCCCCCC-CCC
Q 044005 233 NGNTYEHIPEPN-FHR 247 (248)
Q Consensus 233 ~~~~~~~i~~l~-~l~ 247 (248)
++..|..++.+. .++
T Consensus 236 ~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 236 MTSKKQELQHFPSSLA 251 (306)
T ss_dssp CBCSSSSCCCCCTTCC
T ss_pred cccCHHHHHhhhccCC
Confidence 988888887763 443
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=3.3e-24 Score=177.05 Aligned_cols=195 Identities=22% Similarity=0.197 Sum_probs=130.4
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCC-C---Cc----CCCCCc-ccccCCccccC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPP-I---SS----SLGNNR-LSGVIPPEIGL 103 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~-~---~~----~L~~~~-~~~~~~~~~~~ 103 (248)
..+|++|++++|.+.+..+..+. .++. |++|++++|.+..+... + +. ++++|. +....+..+..
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~-~~~~------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFR-ACRN------LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTT-TCTT------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcc-cCCC------CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 35899999999999876667787 8888 99999999988322110 1 11 566665 55444566666
Q ss_pred CCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEE
Q 044005 104 LTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLY 178 (248)
Q Consensus 104 l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 178 (248)
+++|++|++++|.+++. ..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 77777777777766554 3456677777777776644444566667777777777766644444566667777777
Q ss_pred ecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCC
Q 044005 179 LYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 179 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
+++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 77777766556666666777777777777765444556667777777777776653
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.8e-24 Score=188.29 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=90.5
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc------------CCCCCcccccCCccc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS------------SLGNNRLSGVIPPEI 101 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~------------~L~~~~~~~~~~~~~ 101 (248)
++|++|++++|.+.+..|..+. .+++ |++|++++|.+ .+.++. ++++|.+.+..|..+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~-~l~~------L~~L~L~~n~~---~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFS-RLQD------LQFLKVEQQTP---GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTS-SCTT------CCEEECCCCST---TCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred CccCEEEecCCccCcCChhHhc-cCcc------ccEEECcCCcc---cceECcccccccccCCEEeCCCCccCccChhhc
Confidence 4799999999999887788888 8888 88888888877 333221 788888887778888
Q ss_pred cCCCCCcEEEccCCccCC-------CCCCCCccEEEcCCCccCCCCchh-hcCCCCcceEEeeCCcCCCC
Q 044005 102 GLLTHLKHLHIDMNKLHG-------SENLKFLSTVDLSKNKFSSSMPNS-LRKVKPLLSLGFALNYLSGV 163 (248)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~-------~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~ 163 (248)
..+++|++|++++|.+++ +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+.
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 888888888888888865 356677778888777777554544 56677777777777666543
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.8e-23 Score=183.47 Aligned_cols=205 Identities=15% Similarity=0.186 Sum_probs=172.2
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC-CCC---c----CCCCCcccccCCccccCCC
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP-PIS---S----SLGNNRLSGVIPPEIGLLT 105 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~-~~~---~----~L~~~~~~~~~~~~~~~l~ 105 (248)
.+++.|+|++|.+.+..+..+. .+++ |++|+|++|.++.+.. .+. . ++++|.++...+..+..++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~-~l~~------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFR-HLHH------LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTT------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred CCccEEECcCCcCceECHHHcC-CCCC------CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 4799999999999988888888 8888 9999999999844321 111 1 8899999977777799999
Q ss_pred CCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCc-hhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEe
Q 044005 106 HLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMP-NSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYL 179 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (248)
+|++|++++|.++.+ ..+++|++|++++|.....++ ..+..+++|++|++++|.+... +.+..+++|++|++
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEM 225 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEEC
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEEC
Confidence 999999999998755 678899999999855433454 4688899999999999999854 35788899999999
Q ss_pred cCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 180 YSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 180 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..++.+..+..|+
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 99999888888999999999999999999987788899999999999999999876667777776654
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=7.4e-24 Score=185.57 Aligned_cols=123 Identities=21% Similarity=0.186 Sum_probs=90.0
Q ss_pred CccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEcc
Q 044005 125 FLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMD 204 (248)
Q Consensus 125 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 204 (248)
.|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 34444444444444445566777788888888888876666777788888888888888876667777888888888888
Q ss_pred CCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 205 NNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 205 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
+|.+++..+..+..+++|++|++++|.+++..++.++.++.|+
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 8888876677788888888888888888765555566666554
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=6.7e-24 Score=178.90 Aligned_cols=188 Identities=16% Similarity=0.223 Sum_probs=169.4
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-----------CCCCCcccccCCccc
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS-----------SLGNNRLSGVIPPEI 101 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~-----------~L~~~~~~~~~~~~~ 101 (248)
+.+|++|++++|.+. .+|..++ .+++ |++|++++|.+ . .+|. ++++|.+.+.+|..+
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~-~l~~------L~~L~Ls~n~l---~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQ-QFAG------LETLTLARNPL---R-ALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGG-GGTT------CSEEEEESCCC---C-CCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred CCCCCEEECCCCCcc-chhHHHh-ccCC------CCEEECCCCcc---c-cCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 458999999999998 8898898 8899 99999999998 4 3443 777788888888876
Q ss_pred cC---------CCCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccc
Q 044005 102 GL---------LTHLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSI 168 (248)
Q Consensus 102 ~~---------l~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 168 (248)
.. +++|++|++++|.++.+ ..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred hhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHh
Confidence 64 99999999999999866 57889999999999998 677789999999999999999998999999
Q ss_pred cCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 169 GSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 169 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.+++..+.+.
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999998899999999999999999999999999999999999999999988765
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=1.3e-23 Score=177.09 Aligned_cols=215 Identities=21% Similarity=0.271 Sum_probs=132.0
Q ss_pred CccceeeeCC----------CCcEEEEeeCCCccccccCcchhHHHHHHHhhh------------------ceeEEEecc
Q 044005 23 ATNFGIHCNS----------AKRVISINLNTIGLKVRFTNSHSHQFLILHILI------------------KASIYYLAS 74 (248)
Q Consensus 23 ~~~~~~~c~~----------~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~------------------~L~~L~ls~ 74 (248)
|.+..+.|.. .++++.|++++|.+.+..+..+. .+++|+.|. +|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhh-CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 7788887752 23788899999888866666777 777722222 344444444
Q ss_pred ccccccCCCCCc-----CCCCCcccccCCccccCCCCCcEEEccCCccCCC-------CCCCCccEEEcCCCccCCCCch
Q 044005 75 YRLKLATPPISS-----SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-------ENLKFLSTVDLSKNKFSSSMPN 142 (248)
Q Consensus 75 n~~~~~~~~~~~-----~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~ls~n~l~~~~~~ 142 (248)
|.++.+...++. ++++|.+....+..+..+++|++|++++|.++.. ..+ +|++|++++|.++ .+|.
T Consensus 112 n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~ 189 (332)
T 2ft3_A 112 NHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPK 189 (332)
T ss_dssp SCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCS
T ss_pred CcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCc
Confidence 444211111111 4555555544444456666666666666665421 222 4555555555554 2333
Q ss_pred hhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCC
Q 044005 143 SLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSL 222 (248)
Q Consensus 143 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 222 (248)
.+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|
T Consensus 190 ~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 190 DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 322 56777777777777655566777777777888777776665566777777888888877777 666667777778
Q ss_pred cEEeccCCCCCCCCCCCCCCC
Q 044005 223 NRVHLEQNHLNGNTYEHIPEP 243 (248)
Q Consensus 223 ~~L~l~~n~~~~~~~~~i~~l 243 (248)
+.|++++|.+++..+..++..
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCS
T ss_pred CEEECCCCCCCccChhHcccc
Confidence 888888777776555555543
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=3e-24 Score=182.51 Aligned_cols=226 Identities=16% Similarity=0.147 Sum_probs=165.3
Q ss_pred cCCcccCCCCCccceeeeC------------CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEecccccccc
Q 044005 13 LSLWNLYPINATNFGIHCN------------SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLA 80 (248)
Q Consensus 13 ~~~w~~~~~~~~~~~~~c~------------~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~ 80 (248)
...|.....+|.|.++ |+ -.++|++|++++|.+.+..+..+. .+++ |++|++++|.+++.
T Consensus 20 ~~~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~------L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 20 EESSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQ-RCVN------LQALVLTSNGINTI 91 (353)
T ss_dssp -------CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTT-TCTT------CCEEECTTSCCCEE
T ss_pred ccCCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhc-cCCC------CCEEECCCCccCcc
Confidence 3445554444888877 53 123799999999999876566788 8888 99999999998433
Q ss_pred CCC-C---Cc----CCCCCcccccCCccccCCCCCcEEEccCCccCCC------CCCCCccEEEcCCCc-cCCCCchhhc
Q 044005 81 TPP-I---SS----SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS------ENLKFLSTVDLSKNK-FSSSMPNSLR 145 (248)
Q Consensus 81 ~~~-~---~~----~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~ls~n~-l~~~~~~~~~ 145 (248)
... + +. ++++|.++...+..+..+++|++|++++|.++.+ ..+++|++|++++|. +....+..+.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 211 1 11 8888888865445588999999999999988654 457889999999984 5544456788
Q ss_pred CCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCcc--------------
Q 044005 146 KVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQ-------------- 211 (248)
Q Consensus 146 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------- 211 (248)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++.
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence 899999999999999877788888888999999999888543333445577888888888887752
Q ss_pred -----------------ccccccCCCCCcEEeccCCCCCCCCCCC-CCCCCCCC
Q 044005 212 -----------------IPKSLRNFTSLNRVHLEQNHLNGNTYEH-IPEPNFHR 247 (248)
Q Consensus 212 -----------------~~~~l~~l~~L~~L~l~~n~~~~~~~~~-i~~l~~l~ 247 (248)
+|..+..+++|++|++++|.++ .+|.. ++.++.|+
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQ 304 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCC
Confidence 2344667888999999999887 56665 46666654
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.1e-22 Score=171.17 Aligned_cols=207 Identities=20% Similarity=0.261 Sum_probs=127.2
Q ss_pred CCccceeeeCC----------CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-----
Q 044005 22 NATNFGIHCNS----------AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS----- 86 (248)
Q Consensus 22 ~~~~~~~~c~~----------~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~----- 86 (248)
.|.+..+.|.. .+.++.|++++|.+.+..+..+. .+++ |++|++++|.+ .+..|.
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~------L~~L~L~~n~l---~~~~~~~~~~l 99 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK-NLKN------LHTLILINNKI---SKISPGAFAPL 99 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT-TCTT------CCEEECCSSCC---CCBCTTTTTTC
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc-cCCC------CCEEECCCCcC---CeeCHHHhcCC
Confidence 37777777752 23688888888888866666677 7777 77777777666 222221
Q ss_pred ------CCCCCccc---------------------ccCCccccCCCCCcEEEccCCccCCC-------CCCCCccEEEcC
Q 044005 87 ------SLGNNRLS---------------------GVIPPEIGLLTHLKHLHIDMNKLHGS-------ENLKFLSTVDLS 132 (248)
Q Consensus 87 ------~L~~~~~~---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~ls 132 (248)
++++|.++ ...+..+..+++|++|++++|.++.. ..+++|++|+++
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 44444444 33333344455555555555544321 334555555555
Q ss_pred CCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccc
Q 044005 133 KNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQI 212 (248)
Q Consensus 133 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (248)
+|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+
T Consensus 180 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 180 DTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred CCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 55554 3333322 55666666666666555566677777777777777776655556667777777777777777 56
Q ss_pred cccccCCCCCcEEeccCCCCCCCCCCCCCC
Q 044005 213 PKSLRNFTSLNRVHLEQNHLNGNTYEHIPE 242 (248)
Q Consensus 213 ~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~ 242 (248)
|..+..+++|++|++++|.+++..+..++.
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 666777777777777777777555555543
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=3.8e-23 Score=180.76 Aligned_cols=205 Identities=21% Similarity=0.223 Sum_probs=171.1
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC-CC---Cc----CCCCCcccccCCccccCCC
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP-PI---SS----SLGNNRLSGVIPPEIGLLT 105 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~-~~---~~----~L~~~~~~~~~~~~~~~l~ 105 (248)
.+++.|+|++|.+....+..+. .+++ |++|+|++|.++.+.. .+ +. ++++|.++...+..+..++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~-~l~~------L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFK-HLRH------LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTS-SCSS------CCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCcEEEccCCcCCeeCHHHhh-CCCC------CCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 4789999999999987778888 8888 9999999999844321 11 11 8889999877677899999
Q ss_pred CCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCc-hhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEe
Q 044005 106 HLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMP-NSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYL 179 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (248)
+|++|++++|.++.+ ..+++|++|++++|.....++ ..+..+++|++|++++|.++. +| .+..+++|++|++
T Consensus 137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDL 214 (440)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEEC
T ss_pred cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEEC
Confidence 999999999998755 678899999999855433444 468889999999999999984 44 5788899999999
Q ss_pred cCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 180 YSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 180 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..++.+..+..|+
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 99999887788899999999999999999988788899999999999999999977777777776654
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=6e-23 Score=172.85 Aligned_cols=206 Identities=17% Similarity=0.179 Sum_probs=164.4
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-------------------------
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS------------------------- 86 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~------------------------- 86 (248)
.+++|++|++++|.+.+..|..+. .+++ |++|++++|.++.+...++.
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~------L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 146 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFA-PLVK------LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 146 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTT-TCTT------CCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTT
T ss_pred cCCCCCEEECCCCcCCeeCHHHhc-CCCC------CCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCcc
Confidence 456899999999999887788888 8888 66666666665332211110
Q ss_pred ----CCCCCcccc--cCCccccCCCCCcEEEccCCccCCC--CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCC
Q 044005 87 ----SLGNNRLSG--VIPPEIGLLTHLKHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALN 158 (248)
Q Consensus 87 ----~L~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (248)
++++|.+.. ..+..+..+++|++|++++|.++.+ ...+.|++|++++|.+++..+..+..+++|++|++++|
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 677787753 6678899999999999999999877 34478999999999998777788999999999999999
Q ss_pred cCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCcccccccc------CCCCCcEEeccCCCC
Q 044005 159 YLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLR------NFTSLNRVHLEQNHL 232 (248)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~------~l~~L~~L~l~~n~~ 232 (248)
.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+. ..+.|+.+++++|.+
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 999776778889999999999999997 6778888999999999999999965555443 247899999999998
Q ss_pred CC--CCCCCCCCCCC
Q 044005 233 NG--NTYEHIPEPNF 245 (248)
Q Consensus 233 ~~--~~~~~i~~l~~ 245 (248)
.. ..|..+..+..
T Consensus 306 ~~~~i~~~~f~~~~~ 320 (330)
T 1xku_A 306 QYWEIQPSTFRCVYV 320 (330)
T ss_dssp CGGGSCGGGGTTCCC
T ss_pred cccccCccccccccc
Confidence 63 33445554443
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=6.3e-23 Score=166.46 Aligned_cols=185 Identities=22% Similarity=0.245 Sum_probs=150.1
Q ss_pred CccceeeeCCCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCcccc
Q 044005 23 ATNFGIHCNSAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIG 102 (248)
Q Consensus 23 ~~~~~~~c~~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~ 102 (248)
|.|.|+.|. ...++++++++++. .+|..+. +. ++.|++++|.+ . +..+..+.
T Consensus 5 p~~~gC~C~--~~~~~l~~~~~~l~-~~p~~~~---~~------l~~L~L~~n~l---~-------------~~~~~~~~ 56 (251)
T 3m19_A 5 ETVTGCTCN--EGKKEVDCQGKSLD-SVPSGIP---AD------TEKLDLQSTGL---A-------------TLSDATFR 56 (251)
T ss_dssp HHHHSSEEE--GGGTEEECTTCCCS-SCCSCCC---TT------CCEEECTTSCC---C-------------CCCTTTTT
T ss_pred CCCCceEcC--CCCeEEecCCCCcc-ccCCCCC---CC------CCEEEccCCCc---C-------------ccCHhHhc
Confidence 467778883 24678899999887 5676665 46 89999999888 2 23455788
Q ss_pred CCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEE
Q 044005 103 LLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGL 177 (248)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 177 (248)
.+++|++|++++|.+++. ..+++|++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 57 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEE
Confidence 899999999999988765 567889999999999985555677889999999999999986656667888999999
Q ss_pred EecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCC
Q 044005 178 YLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGN 235 (248)
Q Consensus 178 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 235 (248)
++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999866666788889999999999999876666788899999999999998765
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.3e-22 Score=166.33 Aligned_cols=189 Identities=21% Similarity=0.239 Sum_probs=154.0
Q ss_pred CcccCCCCC--ccceeeeCC----------CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC
Q 044005 15 LWNLYPINA--TNFGIHCNS----------AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP 82 (248)
Q Consensus 15 ~w~~~~~~~--~~~~~~c~~----------~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~ 82 (248)
.|.+..++| .+..+.|.. ..++++|++++|.+.+..+..+. .+++ |++|++++|.++.+..
T Consensus 6 ~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~-~l~~------L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 6 KKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH-RLTK------LRLLYLNDNKLQTLPA 78 (270)
T ss_dssp GGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSS-SCTT------CCEEECCSSCCSCCCT
T ss_pred CCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhc-CCCC------CCEEECCCCccCeeCh
Confidence 365444444 455677752 23699999999999876666788 8888 9999999999854432
Q ss_pred CC----Cc----CCCCCcccccCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCC
Q 044005 83 PI----SS----SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKP 149 (248)
Q Consensus 83 ~~----~~----~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 149 (248)
.+ +. ++++|.+....+..+..+++|++|++++|.++.+ ..+++|++|++++|.+....+..+..+++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 22 11 8889999877777889999999999999999776 56889999999999998555556889999
Q ss_pred cceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCc
Q 044005 150 LLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFG 210 (248)
Q Consensus 150 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (248)
|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++..
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 9999999999997666678899999999999999987666678889999999999999864
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.6e-22 Score=167.64 Aligned_cols=185 Identities=22% Similarity=0.251 Sum_probs=93.9
Q ss_pred CCCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEE
Q 044005 31 NSAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHL 110 (248)
Q Consensus 31 ~~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L 110 (248)
....+++++++++++++ .+|..+. +. +++|++++|.+ .+ ..+..+..+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~---~~------l~~L~L~~N~l---~~-------------~~~~~~~~l~~L~~L 60 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP---KD------TTILHLSENLL---YT-------------FSLATLMPYTRLTQL 60 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC---TT------CCEEECTTSCC---SE-------------EEGGGGTTCTTCCEE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC---CC------CCEEEcCCCcC---Cc-------------cCHHHhhcCCCCCEE
Confidence 34456666666666665 3444443 34 66666666666 11 123344555555555
Q ss_pred EccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcc
Q 044005 111 HIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRS 187 (248)
Q Consensus 111 ~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~ 187 (248)
++++|.++++ ..++.|++|++++|.+. .+|..+..+++|++|++++|.++...+..+..+++|++|++++|++.+.
T Consensus 61 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp ECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred ECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 5555555433 34445555555555554 4444444555555555555555543334455555555555555555443
Q ss_pred hhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCC
Q 044005 188 IRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEP 243 (248)
Q Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l 243 (248)
.+..+..+++|++|++++|++++..+..+..+++|+.|++++|.++ .+|..+...
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~ 194 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence 3344444555555555555555333333444555555555555554 444444433
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=4.9e-23 Score=181.62 Aligned_cols=203 Identities=19% Similarity=0.163 Sum_probs=102.2
Q ss_pred cEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCC----Cc----CCCCCcccccCCccccCCCC
Q 044005 35 RVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPI----SS----SLGNNRLSGVIPPEIGLLTH 106 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~----~~----~L~~~~~~~~~~~~~~~l~~ 106 (248)
+|++|+|++|.+.+..|..+. .+++ |++|+|++|+++.+.... +. ++++|.+....+..+..+++
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~-~l~~------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFN-NLFN------LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTT-TCTT------CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCEEECCCCccCEeChhhhh-CCcc------CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 344444444444333333343 3344 666666666663322111 11 66666666666666677777
Q ss_pred CcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCC---------
Q 044005 107 LKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLS--------- 172 (248)
Q Consensus 107 L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------- 172 (248)
|++|++++|.++.. ..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..+..++
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 77777777766433 4566777777777777644334455566666666666555433332333332
Q ss_pred ---------------CCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCC
Q 044005 173 ---------------NLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTY 237 (248)
Q Consensus 173 ---------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 237 (248)
+|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence 33333333333432222344445555555555555544333344444444444444444444444
Q ss_pred CCCCCCC
Q 044005 238 EHIPEPN 244 (248)
Q Consensus 238 ~~i~~l~ 244 (248)
..++.+.
T Consensus 290 ~~~~~l~ 296 (477)
T 2id5_A 290 YAFRGLN 296 (477)
T ss_dssp TTBTTCT
T ss_pred HHhcCcc
Confidence 4444433
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=1e-22 Score=167.99 Aligned_cols=203 Identities=18% Similarity=0.189 Sum_probs=165.1
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEecccc-ccccCC-CC---Cc----CCCCCcccccCCcccc
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYR-LKLATP-PI---SS----SLGNNRLSGVIPPEIG 102 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~-~~~~~~-~~---~~----~L~~~~~~~~~~~~~~ 102 (248)
..++|++|++++|.+.+..+..+. .++. |++|++++|. ++.... .+ +. ++++|.+.+..+..+.
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~-~l~~------L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 126 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFT-GLAL------LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTT-TCTT------CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCccceeCHhhcC-CccC------CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh
Confidence 456899999999999987788888 8888 9999999997 633211 11 11 8899999988888899
Q ss_pred CCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEE
Q 044005 103 LLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGL 177 (248)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 177 (248)
.+++|++|++++|.++.+ ..+++|++|++++|.++...+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 999999999999999776 567899999999999985555568899999999999999998778899999999999
Q ss_pred EecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCC
Q 044005 178 YLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPE 242 (248)
Q Consensus 178 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~ 242 (248)
++++|.+.+..+..+..+++|++|++++|.+....+.. .-...++.+..+.+.+....|+.+.+
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 99999998877778999999999999999987432211 11234555566777777777776654
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=7.8e-23 Score=185.32 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=78.6
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC-CCCc-------CCCCCcccccCCccccCCC
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP-PISS-------SLGNNRLSGVIPPEIGLLT 105 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~-~~~~-------~L~~~~~~~~~~~~~~~l~ 105 (248)
.+++.++++++.+....+..+. .++. |++|++++|.++++.. .+.. ++++|.+.+..|..|+.++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~-~l~~------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLD-SFRQ------VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHH-HCCC------CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCceEEEeeCCCCCCcCHHHHc-cCCC------CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 4677788888877643333344 6666 7777777777733221 1111 6777777766666677777
Q ss_pred CCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCC
Q 044005 106 HLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSG 162 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 162 (248)
+|++|++++|.++.+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 777777777777655 345667777777777765555566667777777777766653
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-22 Score=175.02 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=81.6
Q ss_pred CcEEEEeeCCCccccccCcc-hhHHHHHHHhhhceeEEEeccccccccCC-CCC---c----CCCCCcccccCCccccCC
Q 044005 34 KRVISINLNTIGLKVRFTNS-HSHQFLILHILIKASIYYLASYRLKLATP-PIS---S----SLGNNRLSGVIPPEIGLL 104 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~-~~~~l~~L~~l~~L~~L~ls~n~~~~~~~-~~~---~----~L~~~~~~~~~~~~~~~l 104 (248)
.+++.|+++++.+.. +|.. +. .+++ |++|++++|.++.+.. .+. . ++++|.+.+..|..+..+
T Consensus 45 ~~l~~l~l~~~~l~~-l~~~~~~-~l~~------L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK-LPAALLD-SFRQ------VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCCSEEEEESCEESE-ECTHHHH-HCCC------CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCceEEEecCCchhh-CChhHhc-cccc------CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 578888888888764 4443 44 6667 8888888877733221 111 1 777777776666677777
Q ss_pred CCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCC
Q 044005 105 THLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSG 162 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 162 (248)
++|++|++++|.++.+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 7888888888777655 346677777777777765555566777777777777776653
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7e-22 Score=162.16 Aligned_cols=174 Identities=23% Similarity=0.228 Sum_probs=89.4
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEc
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHI 112 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 112 (248)
+.+|+.|+++++.+.. ...+. .++. |++|++++|.++ + .+.+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~--~~~l~-~l~~------L~~L~l~~n~l~---~---------------~~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS--VQGIQ-YLPN------VRYLALGGNKLH---D---------------ISALKELTNLTYLIL 92 (272)
T ss_dssp HTTCCEEECTTSCCCC--CTTGG-GCTT------CCEEECTTSCCC---C---------------CGGGTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCccc--ccccc-cCCC------CcEEECCCCCCC---C---------------chhhcCCCCCCEEEC
Confidence 4578888888888763 23455 6666 888888888882 2 123444445555555
Q ss_pred cCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcc
Q 044005 113 DMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRS 187 (248)
Q Consensus 113 ~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~ 187 (248)
++|.++++ ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 55544433 2334455555555554433333344445555555555544433333344445555555555554433
Q ss_pred hhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 188 IRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
.+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 3333444445555555555554433333444455555555444443
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=1.9e-22 Score=182.62 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=68.3
Q ss_pred CccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCch-hhcCCCCcceEEeeCCcCCCCCcccccCC
Q 044005 98 PPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPN-SLRKVKPLLSLGFALNYLSGVIAPSIGSL 171 (248)
Q Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 171 (248)
+..+..+++|++|++++|.+++. ..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 33444444444444444444222 3344455555555544433222 24444555555555555544444444445
Q ss_pred CCCcEEEecCcccCcc---hhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCC
Q 044005 172 SNLKGLYLYSNRLSRS---IRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPN 244 (248)
Q Consensus 172 ~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~ 244 (248)
++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|+.++.+.
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 5555555555554331 112344445555555555555544444455555555555555555544444444443
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=2.4e-22 Score=165.11 Aligned_cols=195 Identities=18% Similarity=0.203 Sum_probs=146.8
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCC-CC---c----CCCCCcccccCCccccCCC
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPP-IS---S----SLGNNRLSGVIPPEIGLLT 105 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~-~~---~----~L~~~~~~~~~~~~~~~l~ 105 (248)
.+|++|++++|.+.+..+..+. .++. |++|++++|.++.+... +. . ++++|.+.+..+..+..++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~-~l~~------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFF-SFPE------LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT-TCTT------CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccEEECCCCcccccCHhHhc-cccC------CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 3699999999999877666788 8888 99999999988433221 11 1 7778888877777788888
Q ss_pred CCcEEEccCCccCCC-----CCCCCccEEEcCCCccCC-CCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCc----
Q 044005 106 HLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSS-SMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLK---- 175 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---- 175 (248)
+|++|++++|.++++ ..+++|++|++++|.+.. .+|..+..+++|++|++++|.+++..+..+..+.+|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 888888888887655 566788888888888874 2577788888888888888888765555555555555
Q ss_pred EEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCC
Q 044005 176 GLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNT 236 (248)
Q Consensus 176 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 236 (248)
+|++++|.+.+..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 181 ~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred eeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 78888888865444333 3447888888888888655556678888888998888887554
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=9.9e-23 Score=169.73 Aligned_cols=197 Identities=18% Similarity=0.204 Sum_probs=163.2
Q ss_pred CCCcEEEEeeCCCccccc--cCcchhHHHHHHHhhhceeEEEeccccccccCCCC---Cc----CCCCCcccccCC-ccc
Q 044005 32 SAKRVISINLNTIGLKVR--FTNSHSHQFLILHILIKASIYYLASYRLKLATPPI---SS----SLGNNRLSGVIP-PEI 101 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~--~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~---~~----~L~~~~~~~~~~-~~~ 101 (248)
..++|++|++++|.+... .+..+. .++. |++|++++|.+..+...+ +. ++++|.+....+ ..+
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~------L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 122 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQSDF-GTTS------LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHHHH-SCSC------CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTT
T ss_pred ccccCCEEECCCCccCcccCcccccc-cccc------cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhh
Confidence 456899999999998743 244555 5556 999999999884322111 11 888888886554 578
Q ss_pred cCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCC-CCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCc
Q 044005 102 GLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSS-SMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLK 175 (248)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 175 (248)
..+++|++|++++|.+++. ..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 9999999999999988654 567899999999999985 4678889999999999999999977788899999999
Q ss_pred EEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCC-CCcEEeccCCCCCCC
Q 044005 176 GLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFT-SLNRVHLEQNHLNGN 235 (248)
Q Consensus 176 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~ 235 (248)
+|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++.
T Consensus 203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 999999999876666788899999999999999988888888885 999999999999754
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=4.9e-22 Score=179.97 Aligned_cols=203 Identities=18% Similarity=0.170 Sum_probs=151.5
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-----------CCCCCcccccCCc-cc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS-----------SLGNNRLSGVIPP-EI 101 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~-----------~L~~~~~~~~~~~-~~ 101 (248)
++|++|++++|.+. .+|..+. .++. |++|++++|.+ .+..|. ++++|.+.+.++. .+
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~-~l~~------L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLV-GLST------LKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCC-SCTT------CCEEECTTCCC---SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred cCCCEEeccCCccC-CCChhhc-cccc------CCEEECccCCc---CcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 45666666666655 4555555 5555 77777777766 332221 6666666655544 37
Q ss_pred cCCCCCcEEEccCCccCCC-------CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcc-cccCCCC
Q 044005 102 GLLTHLKHLHIDMNKLHGS-------ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAP-SIGSLSN 173 (248)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 173 (248)
..+++|++|++++|.+++. ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 7788888888888877543 5677888888888888766677788888899999988888765544 3778889
Q ss_pred CcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCcc---ccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 174 LKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQ---IPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 174 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..++.++.|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence 99999999998877778888899999999999998762 235678899999999999999988888888887765
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.6e-22 Score=162.82 Aligned_cols=205 Identities=17% Similarity=0.186 Sum_probs=159.6
Q ss_pred cccCCCCCcc-c--eeeeCC-------CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEecccc-ccccCCCC
Q 044005 16 WNLYPINATN-F--GIHCNS-------AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYR-LKLATPPI 84 (248)
Q Consensus 16 w~~~~~~~~~-~--~~~c~~-------~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~-~~~~~~~~ 84 (248)
|+|.++.|.. . .+.|.. ..++++|++++|.+.+..+..+. .++. |++|++++|+ +
T Consensus 3 ~cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~-~l~~------L~~L~l~~n~~l------- 68 (239)
T 2xwt_C 3 CSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFS-NLPN------ISRIYVSIDVTL------- 68 (239)
T ss_dssp CCSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTT-TCTT------CCEEEEECCSSC-------
T ss_pred CCCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHcc-CCCC------CcEEeCCCCCCc-------
Confidence 4454555644 3 344753 34799999999999876666787 8888 9999999997 6
Q ss_pred CcCCCCCcccccCCccccCCCCCcEEEccC-CccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcc---eEEe
Q 044005 85 SSSLGNNRLSGVIPPEIGLLTHLKHLHIDM-NKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLL---SLGF 155 (248)
Q Consensus 85 ~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~---~L~l 155 (248)
+...+..+..+++|++|++++ |.++.+ ..+++|++|++++|.++ .+|. +..+++|+ +|++
T Consensus 69 ---------~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l 137 (239)
T 2xwt_C 69 ---------QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEI 137 (239)
T ss_dssp ---------CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEE
T ss_pred ---------ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEEC
Confidence 223345788999999999998 888765 46789999999999998 4665 77888888 9999
Q ss_pred eCC-cCCCCCcccccCCCCCc-EEEecCcccCcchhhhhcCCCCCCEEEccCCc-cCccccccccCC-CCCcEEeccCCC
Q 044005 156 ALN-YLSGVIAPSIGSLSNLK-GLYLYSNRLSRSIRAKIGNLMQLTELEMDNNK-LFGQIPKSLRNF-TSLNRVHLEQNH 231 (248)
Q Consensus 156 ~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~ 231 (248)
++| .++...+..+..+++|+ +|++++|.+. .+|.......+|++|++++|+ +++..+..+..+ ++|+.|++++|.
T Consensus 138 ~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp ESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred CCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 999 88866666788899999 9999999997 444433333789999999995 886556778888 999999999999
Q ss_pred CCCCCCCCCCCCCCC
Q 044005 232 LNGNTYEHIPEPNFH 246 (248)
Q Consensus 232 ~~~~~~~~i~~l~~l 246 (248)
+++..+..+..++.|
T Consensus 217 l~~l~~~~~~~L~~L 231 (239)
T 2xwt_C 217 VTALPSKGLEHLKEL 231 (239)
T ss_dssp CCCCCCTTCTTCSEE
T ss_pred cccCChhHhccCcee
Confidence 985444456665543
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=172.76 Aligned_cols=203 Identities=15% Similarity=0.139 Sum_probs=134.7
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-----------CCCCCcccccCCcccc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS-----------SLGNNRLSGVIPPEIG 102 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~-----------~L~~~~~~~~~~~~~~ 102 (248)
.+++.|++++|.+.+..+..+. .+++ |++|+|++|.+ .+..|. ++++|.+....+..|.
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~-~l~~------L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFA-SFPH------LEELELNENIV---SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTT------CCEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred CCCcEEECCCCccceECHhHcc-CCCC------CCEEECCCCcc---CEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 4799999999999987788888 8888 99999999998 332221 6666666654444566
Q ss_pred CCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEE
Q 044005 103 LLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGL 177 (248)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 177 (248)
.+++|++|++++|.++.. ..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 666777777776666433 455666777777766664455566666677777777776665545556666677777
Q ss_pred EecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCC
Q 044005 178 YLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFH 246 (248)
Q Consensus 178 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l 246 (248)
++++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.++...+..++.+..|
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 777776665555556666677777777766555555555555577777777777763322344444443
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.4e-22 Score=169.57 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=106.0
Q ss_pred CCcEEEEeeCCCccccccCcch--hHHHHHHHhhhceeEEEeccccccccCC---CC-----Cc----CCCCCcccccCC
Q 044005 33 AKRVISINLNTIGLKVRFTNSH--SHQFLILHILIKASIYYLASYRLKLATP---PI-----SS----SLGNNRLSGVIP 98 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~--~~~l~~L~~l~~L~~L~ls~n~~~~~~~---~~-----~~----~L~~~~~~~~~~ 98 (248)
..+|++|++++|.+.+.+|..+ . .++. |++|++++|++++... .+ +. ++++|.+.+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~-~l~~------L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEA-TGPD------LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSC-CSCC------CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred cCCccEEEccCCcccchhHHHHHHh-cCCC------ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 3456666666666666555554 4 5555 6666666666622100 00 11 555566655555
Q ss_pred ccccCCCCCcEEEccCCccCCC---------CCCCCccEEEcCCCccCC--CCc-hhhcCCCCcceEEeeCCcCCCCCc-
Q 044005 99 PEIGLLTHLKHLHIDMNKLHGS---------ENLKFLSTVDLSKNKFSS--SMP-NSLRKVKPLLSLGFALNYLSGVIA- 165 (248)
Q Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~ls~n~l~~--~~~-~~~~~l~~L~~L~l~~n~l~~~~~- 165 (248)
..+..+++|++|++++|++.+. ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+.+..|
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 6666666666666666664321 455666666666666652 111 223455666666666666665442
Q ss_pred ccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCC
Q 044005 166 PSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 166 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 33444566666666666665 3444333 5566666666666643 33 5566666666666666654
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.4e-21 Score=171.42 Aligned_cols=192 Identities=21% Similarity=0.215 Sum_probs=166.0
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCC-C---Cc----CCCCCcccccCCccccCC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPP-I---SS----SLGNNRLSGVIPPEIGLL 104 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~-~---~~----~L~~~~~~~~~~~~~~~l 104 (248)
+++|++|+|++|.+.+..+..+. .+++ |++|+|++|+++.+... + +. ++++|.+....+..+..+
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~-~l~~------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 170 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFN-GLAS------LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT-TCTT------CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred CCCCCEEECCCCccCCcChhhcc-Cccc------CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcC
Confidence 56899999999999987778888 8888 99999999998443322 1 11 889999997777789999
Q ss_pred CCCcEEEccCC-ccCC-----CCCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEE
Q 044005 105 THLKHLHIDMN-KLHG-----SENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLY 178 (248)
Q Consensus 105 ~~L~~L~l~~n-~l~~-----~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 178 (248)
++|++|++++| .+.. +..+++|++|++++|.++ .+| .+..+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 99999999995 4433 267889999999999998 454 578899999999999999988888999999999999
Q ss_pred ecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 179 LYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 179 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 9999998888888999999999999999999766777889999999999999875
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=170.89 Aligned_cols=192 Identities=21% Similarity=0.244 Sum_probs=165.5
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCC-C---Cc----CCCCCcccccCCccccCC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPP-I---SS----SLGNNRLSGVIPPEIGLL 104 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~-~---~~----~L~~~~~~~~~~~~~~~l 104 (248)
+++|++|+|++|.+.+..+..+. .+++ |++|+|++|+++.+... + +. ++++|.+....+..+..+
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~-~l~~------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFN-GLAN------LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGT-TCSS------CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred CCCCCEEECCCCcCCccChhhcc-CCcc------CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC
Confidence 46899999999999877777787 7888 99999999999443321 1 11 889999998777789999
Q ss_pred CCCcEEEccCCc-cCC-----CCCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEE
Q 044005 105 THLKHLHIDMNK-LHG-----SENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLY 178 (248)
Q Consensus 105 ~~L~~L~l~~n~-l~~-----~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 178 (248)
++|++|++++|. +.. +..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 999999999954 432 267889999999999998 566 478899999999999999987788999999999999
Q ss_pred ecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 179 LYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 179 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
+++|.+.+..+..+..+++|++|+|++|.+++..+..+..+++|+.|++++|.+.
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9999998887888999999999999999999777777889999999999999874
No 37
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.1e-22 Score=177.27 Aligned_cols=199 Identities=18% Similarity=0.131 Sum_probs=151.9
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC--CCCc----CCCCCcccccCCccccCCCC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP--PISS----SLGNNRLSGVIPPEIGLLTH 106 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~--~~~~----~L~~~~~~~~~~~~~~~l~~ 106 (248)
+++|++|+|++|.+.+..|..+. .++. |++|+|++|.+++... ..+. ++++|.+++.. ..++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~------L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-----~~~~ 100 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLA-PFTK------LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPS 100 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGT-TCTT------CCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE-----ECTT
T ss_pred CCCccEEEeeCCcCCCCCHHHHh-CCCC------CCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC-----CCCC
Confidence 34899999999999887777888 8888 9999999998832211 1111 77777776432 2377
Q ss_pred CcEEEccCCccCCC--CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCccccc-CCCCCcEEEecCcc
Q 044005 107 LKHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIG-SLSNLKGLYLYSNR 183 (248)
Q Consensus 107 L~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~ 183 (248)
|++|++++|.+++. ..++.|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.
T Consensus 101 L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred cCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 88888888888776 5677889999999988866677788888999999999988876676665 68889999999998
Q ss_pred cCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 184 LSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 184 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
+++. + ....+++|++|++++|.+++ +|..+..+++|+.|++++|.++ .+|..++.+..++
T Consensus 181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~ 240 (487)
T 3oja_A 181 IYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (487)
T ss_dssp CCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred cccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCC
Confidence 8754 2 23357888999999998885 4555788889999999999887 4777777666553
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=4.2e-21 Score=176.13 Aligned_cols=204 Identities=21% Similarity=0.190 Sum_probs=121.7
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-----------CCCCCcccccCCcccc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS-----------SLGNNRLSGVIPPEIG 102 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~-----------~L~~~~~~~~~~~~~~ 102 (248)
+++++|++++|.+.+..+..+. .++. |++|++++|.+ .+..|. ++++|.+....+..|.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~-~l~~------L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFT-RYSQ------LTSLDVGFNTI---SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGG-GGTT------CSEEECCSSCC---CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcEEECCCCCCCCcCHHHHh-CCCc------CcEEECCCCcc---CccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 4677778877777765555666 6666 66666666666 333332 5556666544334566
Q ss_pred CCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCccccc--CCCCCc
Q 044005 103 LLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIG--SLSNLK 175 (248)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~ 175 (248)
.+++|++|++++|.++++ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+. .+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 666666666666665444 3455666666666666544455555566666666666655544333222 234455
Q ss_pred EEEecCcccC---------------------------------------------------cchhhhhcCCC--CCCEEE
Q 044005 176 GLYLYSNRLS---------------------------------------------------RSIRAKIGNLM--QLTELE 202 (248)
Q Consensus 176 ~L~l~~n~i~---------------------------------------------------~~~~~~~~~l~--~L~~L~ 202 (248)
+|++++|.+. +..+..+..+. +|++|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 5555555443 33333344333 377777
Q ss_pred ccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 203 MDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 203 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
+++|.+++..+..+..+++|++|++++|.+.+..|..++.+..|+
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence 777777766666677777777777777777766666776666554
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=183.60 Aligned_cols=128 Identities=23% Similarity=0.193 Sum_probs=79.5
Q ss_pred CccceeeeCCCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc------------CCCC
Q 044005 23 ATNFGIHCNSAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS------------SLGN 90 (248)
Q Consensus 23 ~~~~~~~c~~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~------------~L~~ 90 (248)
|.|.++-+ .++++++|+|++|.+.+..+..+. .++. |++|++++|.+ .+.+++ +|++
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~-~l~~------L~~LdLs~n~~---~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFP-FLEQ------LQLLELGSQYT---PLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCS-SCCS------CSEEEECTTCC---CCEECTTTTSSCTTCCEEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhHCc-cccc------CeEEeCCCCCC---ccccCHHHhcCCCCCCEEECCC
Confidence 45555555 456788888888888777677777 7777 77777776644 222211 6666
Q ss_pred CcccccCCccccCCCCCcEEEccCCccCC-------CCCCCCccEEEcCCCccCCCCc-hhhcCCCCcceEEeeCCcCC
Q 044005 91 NRLSGVIPPEIGLLTHLKHLHIDMNKLHG-------SENLKFLSTVDLSKNKFSSSMP-NSLRKVKPLLSLGFALNYLS 161 (248)
Q Consensus 91 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 161 (248)
|.+.+..|..|..+++|++|++++|.+++ +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 66666666666666666666666666654 2445566666666666654332 34556666666666666554
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=2.5e-21 Score=166.59 Aligned_cols=90 Identities=20% Similarity=0.334 Sum_probs=56.5
Q ss_pred hcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCc
Q 044005 144 LRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLN 223 (248)
Q Consensus 144 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 223 (248)
+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+ ++..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence 4455666666666666665555566666666666666666643 3444455666677777777666 4555566667777
Q ss_pred EEeccCCCCCCC
Q 044005 224 RVHLEQNHLNGN 235 (248)
Q Consensus 224 ~L~l~~n~~~~~ 235 (248)
+|++++|.+++.
T Consensus 322 ~L~L~~N~i~~~ 333 (390)
T 3o6n_A 322 NLYLDHNSIVTL 333 (390)
T ss_dssp EEECCSSCCCCC
T ss_pred EEECCCCcccee
Confidence 777777776644
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.1e-21 Score=165.44 Aligned_cols=213 Identities=19% Similarity=0.182 Sum_probs=171.7
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhh---------------ceeEEEeccccccccCCC----CCc----CC
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILI---------------KASIYYLASYRLKLATPP----ISS----SL 88 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~---------------~L~~L~ls~n~~~~~~~~----~~~----~L 88 (248)
.+++|++|++++|.+.+..|..++ .+++|+.|+ +|++|++++|.++..... .+. ++
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 356788888888888877677777 777777666 699999999998433221 111 78
Q ss_pred CCCcccc--cCCccccCCCCCcEEEccCCccCCC--CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCC
Q 044005 89 GNNRLSG--VIPPEIGLLTHLKHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVI 164 (248)
Q Consensus 89 ~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 164 (248)
++|.++. ..+..+..+ +|++|++++|.++++ ...+.|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 8888863 667778888 999999999999887 33468999999999999666678999999999999999999777
Q ss_pred cccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccC------CCCCcEEeccCCCCC--CCC
Q 044005 165 APSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRN------FTSLNRVHLEQNHLN--GNT 236 (248)
Q Consensus 165 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~--~~~ 236 (248)
+..+..+++|++|++++|++. .+|..+..+++|++|++++|.+++..+..+.. .+.|+.|++++|.+. +..
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccC
Confidence 778899999999999999997 67778899999999999999999655555543 467999999999987 455
Q ss_pred CCCCCCCCCCC
Q 044005 237 YEHIPEPNFHR 247 (248)
Q Consensus 237 ~~~i~~l~~l~ 247 (248)
|..+..+..++
T Consensus 313 ~~~~~~l~~L~ 323 (332)
T 2ft3_A 313 PATFRCVTDRL 323 (332)
T ss_dssp GGGGTTBCCST
T ss_pred cccccccchhh
Confidence 66666666554
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.4e-20 Score=154.38 Aligned_cols=184 Identities=22% Similarity=0.208 Sum_probs=152.0
Q ss_pred EEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCc
Q 044005 37 ISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNK 116 (248)
Q Consensus 37 ~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 116 (248)
..+++..+.+.+. .... .++. |+.|++++|.+ ...+.+..+++|++|++++|.
T Consensus 22 ~~l~l~~~~~~~~--~~~~-~l~~------L~~L~l~~~~i------------------~~~~~l~~l~~L~~L~l~~n~ 74 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQN-ELNS------IDQIIANNSDI------------------KSVQGIQYLPNVRYLALGGNK 74 (272)
T ss_dssp HHHHHTCSCTTSE--ECHH-HHTT------CCEEECTTSCC------------------CCCTTGGGCTTCCEEECTTSC
T ss_pred HHHHhcCcccccc--cccc-cccc------eeeeeeCCCCc------------------ccccccccCCCCcEEECCCCC
Confidence 3344555544432 2233 4555 99999999888 223457889999999999999
Q ss_pred cCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhc
Q 044005 117 LHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIG 193 (248)
Q Consensus 117 l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 193 (248)
++++ ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 75 l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 154 (272)
T 3rfs_A 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD 154 (272)
T ss_dssp CCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc
Confidence 9876 6788999999999999966666788999999999999999977677788999999999999999877677788
Q ss_pred CCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 194 NLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..++.+..|+
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 999999999999999977677788999999999999999987777778777664
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=3.7e-21 Score=159.38 Aligned_cols=175 Identities=23% Similarity=0.203 Sum_probs=148.8
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEcc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHID 113 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~ 113 (248)
.+++.|++++|.+.+..+..+. .++. |++|++++|.+ .+ ++. ...+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~-~l~~------L~~L~L~~n~l---~~--------------~~~-~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLM-PYTR------LTQLNLDRAEL---TK--------------LQV-DGTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT-TCTT------CCEEECTTSCC---CE--------------EEC-CSCCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhh-cCCC------CCEEECCCCcc---Cc--------------ccC-CCCCCcCCEEECC
Confidence 4899999999999887778888 8888 99999999998 22 122 2678899999999
Q ss_pred CCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchh
Q 044005 114 MNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIR 189 (248)
Q Consensus 114 ~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 189 (248)
+|.++.+ ..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|++++..+
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 9999766 567889999999999985556778899999999999999997666667889999999999999986555
Q ss_pred hhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCC
Q 044005 190 AKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+..
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred HHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 66788999999999999998 678888888899999999998864
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=3.6e-22 Score=167.42 Aligned_cols=199 Identities=18% Similarity=0.122 Sum_probs=129.0
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC--CCCc----CCCCCcccccCCccccCCCC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP--PISS----SLGNNRLSGVIPPEIGLLTH 106 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~--~~~~----~L~~~~~~~~~~~~~~~l~~ 106 (248)
.++|++|++++|.+.+..+..+. .++. |++|++++|.+++... ..+. ++++|.+++. ...++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~-~l~~------L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l-----~~~~~ 100 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLA-PFTK------LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL-----LVGPS 100 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHT-TCTT------CCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE-----EECTT
T ss_pred CCCCCEEECcCCccCcCCHHHhh-CCCc------CCEEECCCCcCCcchhhhhcCCCCEEECcCCccccc-----cCCCC
Confidence 34788888888888766556666 6777 8888888887732111 1111 6666666532 22366
Q ss_pred CcEEEccCCccCCC--CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccc-cCCCCCcEEEecCcc
Q 044005 107 LKHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSI-GSLSNLKGLYLYSNR 183 (248)
Q Consensus 107 L~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~ 183 (248)
|++|++++|.+++. ..++.|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.
T Consensus 101 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp CCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred cCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 66777777666555 456677777777777775445566677777777777777775545444 356777777777777
Q ss_pred cCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 184 LSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 184 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
+.+. +. ...+++|++|++++|.+++ ++..+..+++|++|++++|.++ .+|+.++.+..|+
T Consensus 181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 181 IYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp CCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred Cccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 7543 22 2346777777777777773 4445667777777777777776 5666666655543
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=9.8e-22 Score=179.36 Aligned_cols=210 Identities=19% Similarity=0.198 Sum_probs=113.6
Q ss_pred CCcEEEEeeCCCc-ccc-ccCcchhHHHHHHHhhhceeEEEecccccccc----------------------CCCCCc--
Q 044005 33 AKRVISINLNTIG-LKV-RFTNSHSHQFLILHILIKASIYYLASYRLKLA----------------------TPPISS-- 86 (248)
Q Consensus 33 ~~~l~~L~l~~~~-l~~-~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~----------------------~~~~~~-- 86 (248)
+++|++|++++|. +++ .+|..++ .+..+..+.+|++|++++|+++.+ .|.+|.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~ 350 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCE
T ss_pred CCCCCEEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhC
Confidence 5578888888887 777 7777776 653222222344444444444211 222222
Q ss_pred --------CCCCCcccccCCccccCCCC-CcEEEccCCccCCC----C--CCCCccEEEcCCCccCCCCchhhc------
Q 044005 87 --------SLGNNRLSGVIPPEIGLLTH-LKHLHIDMNKLHGS----E--NLKFLSTVDLSKNKFSSSMPNSLR------ 145 (248)
Q Consensus 87 --------~L~~~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~----~--~~~~L~~L~ls~n~l~~~~~~~~~------ 145 (248)
++++|.+. .+|..+..+++ |++|++++|.++.+ . .+++|++|++++|.+.+..|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 45555555 45555666666 66666666665543 1 112344444444444433333333
Q ss_pred -------------------------CCCCcceEEeeCCcCCCCCcccccC--------CCCCcEEEecCcccCcchhhhh
Q 044005 146 -------------------------KVKPLLSLGFALNYLSGVIAPSIGS--------LSNLKGLYLYSNRLSRSIRAKI 192 (248)
Q Consensus 146 -------------------------~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~i~~~~~~~~ 192 (248)
.+++|++|++++|.++ .+|..... +++|++|++++|.++ .+|..+
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 507 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDF 507 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGG
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhh
Confidence 3444555555555444 22222111 115666666666665 455555
Q ss_pred c--CCCCCCEEEccCCccCccccccccCCCCCcEEec------cCCCCCCCCCCCCCCCCCCC
Q 044005 193 G--NLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHL------EQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 193 ~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l------~~n~~~~~~~~~i~~l~~l~ 247 (248)
. .+++|++|++++|.+++ +|..+..+++|+.|++ ++|.+.+.+|+.++.+..|+
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred hhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 4 66677777777777764 6666666777777777 34566666776666666554
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=3e-21 Score=174.96 Aligned_cols=195 Identities=19% Similarity=0.249 Sum_probs=113.7
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCC----Cc----CCCCCcccccCCccccCC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPI----SS----SLGNNRLSGVIPPEIGLL 104 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~----~~----~L~~~~~~~~~~~~~~~l 104 (248)
+++|+.|++++|.+.+..+..++ .++. |++|+|++|.+++..... +. ++++|.+....+..|..+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~-~l~~------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 146 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFA-YAHT------IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTT-TCTT------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEECCCCCCCCCChHHhc-CCCC------CCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccC
Confidence 35788888888888876666777 7777 666666666662221110 10 555555554333334555
Q ss_pred CCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCC---------------------------------------
Q 044005 105 THLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSM--------------------------------------- 140 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~--------------------------------------- 140 (248)
++|++|++++|.+++. ..+++|++|++++|.+.+..
T Consensus 147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226 (597)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE
T ss_pred CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccc
Confidence 5555666555555433 33444555555555443211
Q ss_pred --------------------chhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCE
Q 044005 141 --------------------PNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTE 200 (248)
Q Consensus 141 --------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 200 (248)
+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+ +|..+..+++|++
T Consensus 227 ~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 305 (597)
T 3oja_B 227 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 305 (597)
T ss_dssp ECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCE
T ss_pred ccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcE
Confidence 1234455666666666666665555566666666666666666653 3444455666666
Q ss_pred EEccCCccCccccccccCCCCCcEEeccCCCCCCCC
Q 044005 201 LEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNT 236 (248)
Q Consensus 201 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 236 (248)
|++++|.++ .+|..+..+++|+.|++++|.+++..
T Consensus 306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence 666666666 45555666667777777777666443
No 47
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=3.3e-22 Score=167.07 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=98.9
Q ss_pred EEEEeeCCCccccccCcch--hHHHHHHHhhhceeEEEeccccccccCCCCC-----------c----CCCCCcccccCC
Q 044005 36 VISINLNTIGLKVRFTNSH--SHQFLILHILIKASIYYLASYRLKLATPPIS-----------S----SLGNNRLSGVIP 98 (248)
Q Consensus 36 l~~L~l~~~~l~~~~~~~~--~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~-----------~----~L~~~~~~~~~~ 98 (248)
|++|++++|.+.+..|..+ . .+++ |++|++++|.+ .+..+ . ++++|.+.+..+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~-~~~~------L~~L~Ls~n~i---~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 162 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEA-TGLA------LSSLRLRNVSW---ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC 162 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSC-CCBC------CSSCEEESCCC---SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred eeEEEeeCCEeccchhhhhhhc-cCCC------CCEEEeecccc---cchhhhhHHHHhhhccCCCEEEeeCCCcchhhH
Confidence 6666666666665555555 3 4445 66666666666 32211 1 555555555555
Q ss_pred ccccCCCCCcEEEccCCccCCC---------CCCCCccEEEcCCCccCCCCch----hhcCCCCcceEEeeCCcCCCCCc
Q 044005 99 PEIGLLTHLKHLHIDMNKLHGS---------ENLKFLSTVDLSKNKFSSSMPN----SLRKVKPLLSLGFALNYLSGVIA 165 (248)
Q Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~ 165 (248)
..+..+++|++|++++|++.+. ..+++|++|++++|.++ .++. .+..+++|++|++++|.+.+..|
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 5556666666666666654321 34555666666666554 2222 23455666666666666655444
Q ss_pred ccccCC---CCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCC
Q 044005 166 PSIGSL---SNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 166 ~~~~~l---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++ +|. +..+++|+.|++++|.+++
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred hhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 444444 46666666666664 3343332 456666666666653 222 3455666666666666554
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=174.26 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=63.2
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCC-CCc----CCCCCcccc-cCCccccCCC
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPP-ISS----SLGNNRLSG-VIPPEIGLLT 105 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~-~~~----~L~~~~~~~-~~~~~~~~l~ 105 (248)
.+.+|++|++++|.+.+..|..++ .+++ |++|++++|+++.+... .+. ++++|.+.+ .+|..++.++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~------L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFK-FNQE------LEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMS 115 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGT-TCTT------CCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCT
T ss_pred ccccccEEecCCCccCCcChHHhh-cccC------CCEEecCCCceeecCccccCCccEEeccCCccccccchhhhccCC
Confidence 466899999999999887788888 8888 99999999988433221 111 888899887 4678899999
Q ss_pred CCcEEEccCCccC
Q 044005 106 HLKHLHIDMNKLH 118 (248)
Q Consensus 106 ~L~~L~l~~n~l~ 118 (248)
+|++|++++|.++
T Consensus 116 ~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 116 QLKFLGLSTTHLE 128 (520)
T ss_dssp TCCEEEEEESSCC
T ss_pred cceEEEecCcccc
Confidence 9999999888775
No 49
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.8e-21 Score=151.52 Aligned_cols=180 Identities=20% Similarity=0.208 Sum_probs=122.4
Q ss_pred CCCccceeeeCCCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCcc
Q 044005 21 INATNFGIHCNSAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPE 100 (248)
Q Consensus 21 ~~~~~~~~~c~~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~ 100 (248)
+.|.|.++.|... ++. .+|..+. +. |++|++++|.+ . +..+..
T Consensus 5 C~C~~~~v~c~~~-----------~l~-~~p~~~~---~~------l~~L~l~~n~l---~-------------~~~~~~ 47 (208)
T 2o6s_A 5 CSCSGTTVECYSQ-----------GRT-SVPTGIP---AQ------TTYLDLETNSL---K-------------SLPNGV 47 (208)
T ss_dssp CEEETTEEECCSS-----------CCS-SCCSCCC---TT------CSEEECCSSCC---C-------------CCCTTT
T ss_pred CEECCCEEEecCC-----------Ccc-CCCCCCC---CC------CcEEEcCCCcc---C-------------cCChhh
Confidence 3388888888632 222 2233333 35 77777777776 1 122334
Q ss_pred ccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCc
Q 044005 101 IGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLK 175 (248)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 175 (248)
+..+++|++|++++|.++.+ ..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence 56677777777777777655 3556777888887777744444567778888888888888765555567778888
Q ss_pred EEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCC
Q 044005 176 GLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPN 244 (248)
Q Consensus 176 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~ 244 (248)
+|++++|.+.+..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.+++.+|+.++.+.
T Consensus 128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred EEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 88888888876555557777888888888886653 456778888888888888888777664
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1e-21 Score=177.85 Aligned_cols=194 Identities=18% Similarity=0.148 Sum_probs=116.4
Q ss_pred CCcEEEEeeCCCccccc--cCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-------CCCCCcccccCC-cccc
Q 044005 33 AKRVISINLNTIGLKVR--FTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS-------SLGNNRLSGVIP-PEIG 102 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~--~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~-------~L~~~~~~~~~~-~~~~ 102 (248)
.++|++|++++|.+.+. .+..+. .++. |++|++++|.++.....+.. ++++|.+.+..+ ..+.
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~------L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDL-GTNS------LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHH-CCSC------CCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred CCCCCEEECcCCccCCCcchhhhhc-cCCc------ccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 34566666666666543 244444 4445 66777776666332211111 566666665555 4566
Q ss_pred CCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCC-CchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcE
Q 044005 103 LLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSS-MPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKG 176 (248)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 176 (248)
.+++|++|++++|.+++. ..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 666666666666666442 4556666666666666542 4555666666666666666666555556666666666
Q ss_pred EEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCC-CCcEEeccCCCCCC
Q 044005 177 LYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFT-SLNRVHLEQNHLNG 234 (248)
Q Consensus 177 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~ 234 (248)
|++++|++.+..|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.+..
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 666666666655666666666666666666666 4555555665 46666666666654
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=5.7e-21 Score=175.23 Aligned_cols=195 Identities=17% Similarity=0.148 Sum_probs=140.9
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCC-CCc-------CCCCCcccccCCccccCC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPP-ISS-------SLGNNRLSGVIPPEIGLL 104 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~-~~~-------~L~~~~~~~~~~~~~~~l 104 (248)
.++|++|++++|.+.+..|..++ .++. |++|++++|.++.+... +.. ++++|.+.+..+..+..+
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~------L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQ-KLPM------LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHH-HCTT------CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred CCcCcEEECCCCccCccCHHHHh-cccC------cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 45788999999988877777777 7777 88888888877332221 111 677777776656677777
Q ss_pred CCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhc--CCCCcceEEeeCCcCCCC--------------
Q 044005 105 THLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLR--KVKPLLSLGFALNYLSGV-------------- 163 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~-------------- 163 (248)
++|++|++++|.+++. ..+++|++|++++|.+++..+..+. .+++|++|++++|.+.+.
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 7888888877777554 4566677777777766644443332 335566666666555433
Q ss_pred -------------------------------------CcccccCCC--CCcEEEecCcccCcchhhhhcCCCCCCEEEcc
Q 044005 164 -------------------------------------IAPSIGSLS--NLKGLYLYSNRLSRSIRAKIGNLMQLTELEMD 204 (248)
Q Consensus 164 -------------------------------------~~~~~~~l~--~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 204 (248)
.+..+..+. +|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 333343443 49999999999988778889999999999999
Q ss_pred CCccCccccccccCCCCCcEEeccCCCCCC
Q 044005 205 NNKLFGQIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 205 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
+|.+++..+..+..+++|+.|++++|...+
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhc
Confidence 999998888899999999999999876654
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.6e-21 Score=176.63 Aligned_cols=176 Identities=19% Similarity=0.150 Sum_probs=132.1
Q ss_pred eeEEEeccccccccC------CCCCc----CCCCCcccccCCccccCCCCCcEEEccCCccCCC------CCCCCccEEE
Q 044005 67 ASIYYLASYRLKLAT------PPISS----SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS------ENLKFLSTVD 130 (248)
Q Consensus 67 L~~L~ls~n~~~~~~------~~~~~----~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~ 130 (248)
|++|++++|.+++.. +..+. ++++|.+.. +|..+..+++|++|++++|.+++. ..+++|++|+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 677777777662210 00011 677777664 456777788888888888877544 4567888888
Q ss_pred cCCCccCCCCchhhcCCCCcceEEeeCCcCCC-CCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccC
Q 044005 131 LSKNKFSSSMPNSLRKVKPLLSLGFALNYLSG-VIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLF 209 (248)
Q Consensus 131 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (248)
+++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 88888876677778888888888888888876 35677788888888888888888777777888888888888888888
Q ss_pred ccccccccCCCCCcEEeccCCCCCCCCCCCCCCCC
Q 044005 210 GQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPN 244 (248)
Q Consensus 210 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~ 244 (248)
+..|..+..+++|+.|++++|.++ .+|..+..+.
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred CcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 777888888888888888888887 6776665553
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=9.8e-22 Score=166.98 Aligned_cols=198 Identities=19% Similarity=0.225 Sum_probs=158.5
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCC----CCc----CCCCCcccccCC-cccc
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPP----ISS----SLGNNRLSGVIP-PEIG 102 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~----~~~----~L~~~~~~~~~~-~~~~ 102 (248)
..++|++|++++|.+.+..+..+. .+++ |++|++++|+++.+... .+. ++++|.+....+ ..+.
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 146 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFS-SLGS------LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTT-TCTT------CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCT
T ss_pred cCCCCCEEECCCCccCccCHhhcC-CCCC------CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhc
Confidence 456899999999999987777888 8888 99999999998433221 111 888898885433 4788
Q ss_pred CCCCCcEEEccCCc-cCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcE
Q 044005 103 LLTHLKHLHIDMNK-LHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKG 176 (248)
Q Consensus 103 ~l~~L~~L~l~~n~-l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 176 (248)
.+++|++|++++|. ++.. ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++
T Consensus 147 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 226 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226 (353)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEE
T ss_pred cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccE
Confidence 99999999999984 5433 67788999999999998777888899999999999999987433333445788999
Q ss_pred EEecCcccCcc-------------------------------hhhhhcCCCCCCEEEccCCccCcccccc-ccCCCCCcE
Q 044005 177 LYLYSNRLSRS-------------------------------IRAKIGNLMQLTELEMDNNKLFGQIPKS-LRNFTSLNR 224 (248)
Q Consensus 177 L~l~~n~i~~~-------------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~ 224 (248)
|++++|.+.+. +|..+..+++|++|++++|.++ .+|.. +..+++|++
T Consensus 227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCE
Confidence 99998887652 4566788999999999999999 55655 589999999
Q ss_pred EeccCCCCCCCCC
Q 044005 225 VHLEQNHLNGNTY 237 (248)
Q Consensus 225 L~l~~n~~~~~~~ 237 (248)
|++++|.+.+..|
T Consensus 306 L~L~~N~~~~~~~ 318 (353)
T 2z80_A 306 IWLHTNPWDCSCP 318 (353)
T ss_dssp EECCSSCBCCCHH
T ss_pred EEeeCCCccCcCC
Confidence 9999999986644
No 54
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=5.6e-21 Score=171.86 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=45.1
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhh------------------ceeEEEeccccccccCCC-CCc----CCCC
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILI------------------KASIYYLASYRLKLATPP-ISS----SLGN 90 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~------------------~L~~L~ls~n~~~~~~~~-~~~----~L~~ 90 (248)
+++++|++++|.+.+..+..+. .+++|+.|+ +|++|++++|+++.+... .+. ++++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~ 130 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDIS-FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSF 130 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCS
T ss_pred CCcCEEECCCCCccccChhhhc-cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCC
Confidence 3566666666665544444555 555511111 255666666555222111 000 6666
Q ss_pred Ccccc-cCCccccCCCCCcEEEccCCccCC
Q 044005 91 NRLSG-VIPPEIGLLTHLKHLHIDMNKLHG 119 (248)
Q Consensus 91 ~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~ 119 (248)
|.+.+ .+|..+.++++|++|++++|.++.
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCccccCchHhhcccCcccEEecCCCcccc
Confidence 66665 235667777777777777776653
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=177.63 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=66.4
Q ss_pred CCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEec
Q 044005 148 KPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHL 227 (248)
Q Consensus 148 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 227 (248)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 34555555555555444555666677777777777776666666677777777777777777655666777777777777
Q ss_pred cCCCCCCCCCCCCCCCCCCC
Q 044005 228 EQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 228 ~~n~~~~~~~~~i~~l~~l~ 247 (248)
++|.+....+..++.+..|+
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCC
T ss_pred CCCCCCccChhhhcCCCCCC
Confidence 77777655555666655543
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=5.2e-21 Score=171.24 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=111.2
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEcc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHID 113 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~ 113 (248)
++|++|++++|.+.+..+..+. .+++ |++|++++|++ .+ ..|..|..+++|++|+++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~------L~~L~Ls~n~i---~~-------------~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLR-ACAN------LQVLILKSSRI---NT-------------IEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTS-SCTT------CCEEECTTSCC---CE-------------ECTTTTTTCTTCCEEECT
T ss_pred CCccEEECcCCccCccChhhhh-cCCc------ccEEECCCCCc---Cc-------------cChhhccccccCCEEECC
Confidence 4799999999999988788888 8888 99999999998 22 234455666666666666
Q ss_pred CCccCCC-----CCCCCccEEEcCCCccCC-CCchhhcCCCCcceEEeeCCcCCCCC-cccccCCCCCcEEEecCcccCc
Q 044005 114 MNKLHGS-----ENLKFLSTVDLSKNKFSS-SMPNSLRKVKPLLSLGFALNYLSGVI-APSIGSLSNLKGLYLYSNRLSR 186 (248)
Q Consensus 114 ~n~l~~~-----~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~ 186 (248)
+|.+++. ..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+.+ +..+..+++|++|++++|.+.+
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 6666554 455566666666666553 23445556666666666666532222 2355556666666666666655
Q ss_pred chhhhhcCCCCCCEEEccCCccCcccccc-ccCCCCCcEEeccCCCCCC
Q 044005 187 SIRAKIGNLMQLTELEMDNNKLFGQIPKS-LRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~ 234 (248)
..|..+..+++|++|++++|.+.. ++.. +..+++|++|++++|.+++
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCcccc
Confidence 555555556666666666665542 2222 2345566666666666553
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5.3e-20 Score=153.67 Aligned_cols=183 Identities=20% Similarity=0.256 Sum_probs=131.4
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC--CCCc----CCCCCcccccCCccccCCCC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP--PISS----SLGNNRLSGVIPPEIGLLTH 106 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~--~~~~----~L~~~~~~~~~~~~~~~l~~ 106 (248)
+++|++|+++++.+.. ++ .+. .+++ |++|++++|.++.... ..+. ++++|.+.+. +.+..+++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~-~l~~------L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQ-YLNN------LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGG-GCTT------CCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred cCCcCEEEeeCCCccC-ch-hhh-ccCC------CCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence 4578888888888764 33 455 6666 8888888888833222 0111 6666666642 46777888
Q ss_pred CcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcc
Q 044005 107 LKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNR 183 (248)
Q Consensus 107 L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (248)
|++|++++|.++++ ..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+. +. +..+++|+.|++++|.
T Consensus 109 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc
Confidence 88888888887766 667788888888888773 333 67788888888888888743 33 7778888888888888
Q ss_pred cCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCC
Q 044005 184 LSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 184 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
+.+..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.+++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 865433 677888888888888887443 36778888888888888864
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=1.3e-21 Score=163.60 Aligned_cols=161 Identities=24% Similarity=0.204 Sum_probs=71.7
Q ss_pred ceeEEEeccccccccCCCCCc-------------CCCCCcccccCCccccCC-----CCCcEEEccCCccCCC-----CC
Q 044005 66 KASIYYLASYRLKLATPPISS-------------SLGNNRLSGVIPPEIGLL-----THLKHLHIDMNKLHGS-----EN 122 (248)
Q Consensus 66 ~L~~L~ls~n~~~~~~~~~~~-------------~L~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~-----~~ 122 (248)
+|++|++++|++ .+.+|. ++++|.+++. |..+..+ ++|++|++++|.+++. ..
T Consensus 96 ~L~~L~L~~n~l---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 96 GLQELTLENLEV---TGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp CCCEEEEEEEBC---BSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CccEEEccCCcc---cchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 466666666666 222111 4444444433 4444333 4455555555544333 23
Q ss_pred CCCccEEEcCCCccCCC--Cchhh--cCCCCcceEEeeCCcCCCC--Cc-ccccCCCCCcEEEecCcccCcchh-hhhcC
Q 044005 123 LKFLSTVDLSKNKFSSS--MPNSL--RKVKPLLSLGFALNYLSGV--IA-PSIGSLSNLKGLYLYSNRLSRSIR-AKIGN 194 (248)
Q Consensus 123 ~~~L~~L~ls~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~ 194 (248)
+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++. ++ ..+..+++|++|++++|.+.+..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 44455555555543322 11222 3444555555555544411 11 112234455555555555543332 22333
Q ss_pred CCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 195 LMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
+++|++|++++|.++ .+|..+. ++|++|++++|.++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCC
Confidence 445555555555554 3444333 45555555555554
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=8.5e-21 Score=170.40 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=88.0
Q ss_pred CCCCCcccccC--CccccCCCCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCc-hhhcCCCCcceEEeeCCc
Q 044005 87 SLGNNRLSGVI--PPEIGLLTHLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMP-NSLRKVKPLLSLGFALNY 159 (248)
Q Consensus 87 ~L~~~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 159 (248)
++++|.+.+.. +..+..+++|++|++++|.+++. ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred eCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence 44444444322 34445555555555555555433 345556666666665553333 244555666666666666
Q ss_pred CCCCCcccccCCCCCcEEEecCcccC-cchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCC
Q 044005 160 LSGVIAPSIGSLSNLKGLYLYSNRLS-RSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYE 238 (248)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 238 (248)
+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+.
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 55555555555666666666666654 34455555566666666666666655455555666666666666666555555
Q ss_pred CCCCCCCC
Q 044005 239 HIPEPNFH 246 (248)
Q Consensus 239 ~i~~l~~l 246 (248)
.++.++.|
T Consensus 513 ~~~~l~~L 520 (570)
T 2z63_A 513 IFDRLTSL 520 (570)
T ss_dssp TTTTCTTC
T ss_pred HhhcccCC
Confidence 55555444
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=5e-20 Score=151.18 Aligned_cols=198 Identities=16% Similarity=0.169 Sum_probs=152.4
Q ss_pred EeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC-CC---Cc----CCCCCcccccCCccccCCCCCcEE
Q 044005 39 INLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP-PI---SS----SLGNNRLSGVIPPEIGLLTHLKHL 110 (248)
Q Consensus 39 L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~-~~---~~----~L~~~~~~~~~~~~~~~l~~L~~L 110 (248)
++..+..+. .+|..+. +. |++|++++|.++.... .+ +. ++++|.+....+..+..+++|++|
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~------l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FS------TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TT------CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred EEecCCCcc-ccCCCCC---CC------ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence 334444443 4565555 46 9999999999844332 11 11 888999987777789999999999
Q ss_pred EccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCC-CcccccCCCCCcEEEecCccc
Q 044005 111 HIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV-IAPSIGSLSNLKGLYLYSNRL 184 (248)
Q Consensus 111 ~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i 184 (248)
++++|.+++. ..+++|++|++++|.+....+..+..+++|++|++++|.+... +|..+..+++|++|++++|++
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 9999988654 6778999999999999855555788899999999999999863 578899999999999999999
Q ss_pred CcchhhhhcCCCCCC----EEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 185 SRSIRAKIGNLMQLT----ELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 185 ~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
.+..+..+..+.+|+ +|++++|.+++..+.. ....+|++|++++|.+++..+..++.+..|+
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS-SCSCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred CcCCHHHhhhhhhccccceeeecCCCcccccCccc-cCCCcccEEECCCCceeecCHhHhccccccc
Confidence 876666666665666 8999999998544443 4456899999999999866666667776654
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=8.3e-21 Score=170.46 Aligned_cols=197 Identities=19% Similarity=0.176 Sum_probs=160.9
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccC------CCCCc----CCCCCcccccCCccc
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLAT------PPISS----SLGNNRLSGVIPPEI 101 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~------~~~~~----~L~~~~~~~~~~~~~ 101 (248)
..++|+.|++++|.+.+..+. . .++. |++|++++|.++... ...+. ++++|.+.+. +..+
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~--~-~~~~------L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~ 392 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE--V-DLPS------LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNF 392 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC--C-BCTT------CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEE
T ss_pred cccccCEEeCcCCcccccccc--c-cCCC------CCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccc
Confidence 345788888888877655443 3 5566 888888887773221 00111 6777777754 4448
Q ss_pred cCCCCCcEEEccCCccCCC------CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCC-CCCcccccCCCCC
Q 044005 102 GLLTHLKHLHIDMNKLHGS------ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS-GVIAPSIGSLSNL 174 (248)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L 174 (248)
..+++|++|++++|.+++. ..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 9999999999999988654 57789999999999998778888999999999999999997 4678889999999
Q ss_pred cEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCC
Q 044005 175 KGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYE 238 (248)
Q Consensus 175 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 238 (248)
++|++++|++.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|.
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999888788999999999999999999987777889999999999999999977664
No 62
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2.2e-19 Score=145.49 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=139.0
Q ss_pred eeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCc
Q 044005 67 ASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMP 141 (248)
Q Consensus 67 L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~ 141 (248)
.++++++++.+ ..+|..+. +++++|++++|.++++ ..+++|++|++++|.+++..+
T Consensus 16 ~~~l~~~~~~l-----------------~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 16 KKEVDCQGKSL-----------------DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp GTEEECTTCCC-----------------SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CeEEecCCCCc-----------------cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 67888888887 23454443 5899999999999776 567899999999999997677
Q ss_pred hhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCC
Q 044005 142 NSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTS 221 (248)
Q Consensus 142 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 221 (248)
..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 77899999999999999999777777889999999999999998766667888999999999999999666667899999
Q ss_pred CcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 222 LNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 222 L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
|+.|++++|.+++..+..+..+..|+
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCC
Confidence 99999999999977777788777664
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=3.5e-20 Score=166.67 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=95.8
Q ss_pred cEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC-CCC---c----CCCCCcccccCCccccCCCC
Q 044005 35 RVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP-PIS---S----SLGNNRLSGVIPPEIGLLTH 106 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~-~~~---~----~L~~~~~~~~~~~~~~~l~~ 106 (248)
..+++++++++++. +|..+. +. |++|++++|.++.... .+. . ++++|.+++..|..|..+++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~---~~------L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP---PR------TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC---TT------CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred CCcEEEcCCCCCcc-CCCCCC---CC------cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 45899999999984 776665 57 9999999999933321 111 1 89999999888999999999
Q ss_pred CcEEEccCCccCCC--CCCCCccEEEcCCCccCC-CCchhhcCCCCcceEEeeCCcCCC
Q 044005 107 LKHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSS-SMPNSLRKVKPLLSLGFALNYLSG 162 (248)
Q Consensus 107 L~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~ 162 (248)
|++|++++|.++.+ ..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+..
T Consensus 102 L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCEEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 99999999999766 467889999999999985 245788999999999999998764
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=6.6e-20 Score=171.71 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=85.9
Q ss_pred CCCCCcccccCCccccCCCC-CcEEEccCCccCCC----C-------------------------------CCCCccEEE
Q 044005 87 SLGNNRLSGVIPPEIGLLTH-LKHLHIDMNKLHGS----E-------------------------------NLKFLSTVD 130 (248)
Q Consensus 87 ~L~~~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~----~-------------------------------~~~~L~~L~ 130 (248)
++++|.+. .+|..+..+++ |++|++++|.++.+ . .+++|++|+
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 55566665 55555666666 66666666655433 0 111344455
Q ss_pred cCCCccCCCCchhh-cCCCCcceEEeeCCcCCCCCcccccCC--------CCCcEEEecCcccCcchhhhhc--CCCCCC
Q 044005 131 LSKNKFSSSMPNSL-RKVKPLLSLGFALNYLSGVIAPSIGSL--------SNLKGLYLYSNRLSRSIRAKIG--NLMQLT 199 (248)
Q Consensus 131 ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l--------~~L~~L~l~~n~i~~~~~~~~~--~l~~L~ 199 (248)
+++|.+. .+|..+ ..+++|+.|++++|.+. .+|..+... ++|++|++++|++. .+|..+. .+++|+
T Consensus 680 Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~ 756 (876)
T 4ecn_A 680 LSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLS 756 (876)
T ss_dssp CCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCC
T ss_pred ccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcC
Confidence 5555444 334332 34566666666666665 333332221 25666666666665 4555554 566666
Q ss_pred EEEccCCccCccccccccCCCCCcEEeccC------CCCCCCCCCCCCCCCCCC
Q 044005 200 ELEMDNNKLFGQIPKSLRNFTSLNRVHLEQ------NHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 200 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~------n~~~~~~~~~i~~l~~l~ 247 (248)
+|+|++|.+++ +|..+..+++|+.|++++ |.+.+.+|..++.+..|+
T Consensus 757 ~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 757 NMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp EEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 66666666664 555566666666666654 555566666665555543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=7.5e-22 Score=165.45 Aligned_cols=192 Identities=21% Similarity=0.182 Sum_probs=151.8
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc----CCCCCcccccCCccccCCCCC
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS----SLGNNRLSGVIPPEIGLLTHL 107 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~----~L~~~~~~~~~~~~~~~l~~L 107 (248)
.+++|++|++++|.+.+..+ +. .++. |++|++++|.+++.... +. ++++|.+.+..+. .+++|
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~--~~-~l~~------L~~L~Ls~n~l~~l~~~-~~L~~L~l~~n~l~~~~~~---~~~~L 122 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLD--LE-SLST------LRTLDLNNNYVQELLVG-PSIETLHAANNNISRVSCS---RGQGK 122 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEE--ET-TCTT------CCEEECCSSEEEEEEEC-TTCCEEECCSSCCSEEEEC---CCSSC
T ss_pred CCCcCCEEECCCCcCCcchh--hh-hcCC------CCEEECcCCccccccCC-CCcCEEECCCCccCCcCcc---ccCCC
Confidence 46789999999999986544 66 7788 99999999998432211 11 8888888865443 36789
Q ss_pred cEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhh-cCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecC
Q 044005 108 KHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSL-RKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYS 181 (248)
Q Consensus 108 ~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 181 (248)
++|++++|.+++. ..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++.. + ....+++|++|++++
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSS 200 (317)
T ss_dssp EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCS
T ss_pred CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCC
Confidence 9999999999876 457889999999999986555555 4689999999999999854 3 334589999999999
Q ss_pred cccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC-CCCCCCC
Q 044005 182 NRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN-GNTYEHI 240 (248)
Q Consensus 182 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~i 240 (248)
|.+.+ ++..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+
T Consensus 201 N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp SCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred CcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 99975 4445888999999999999999 67888889999999999999987 4444333
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.7e-19 Score=160.58 Aligned_cols=196 Identities=26% Similarity=0.366 Sum_probs=120.3
Q ss_pred cEEEEeeCCCccccccCcch-----hHHHHHHHh-----------------h---hceeEEEeccccccccC--CCCCc-
Q 044005 35 RVISINLNTIGLKVRFTNSH-----SHQFLILHI-----------------L---IKASIYYLASYRLKLAT--PPISS- 86 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~-----~~~l~~L~~-----------------l---~~L~~L~ls~n~~~~~~--~~~~~- 86 (248)
+|++|++++|.+.+.+|..+ . .++.|+. + .+|+.|++++|.+.... +..+.
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~-~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L 326 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGT-SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSC-CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred cccEEEeecccccCccccchhhcccc-cCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence 67788888888777777666 3 3444110 0 12556666666552222 11111
Q ss_pred ---CCCCCcccccCCccccCCCCCcEEEccCCccCCC-------CCCCCccEEEcCCCccCCCCch-hhcCCCCcceEEe
Q 044005 87 ---SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-------ENLKFLSTVDLSKNKFSSSMPN-SLRKVKPLLSLGF 155 (248)
Q Consensus 87 ---~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l 155 (248)
++++|.+.+.+|..+..+++|++|++++|.++++ ..+++|++|++++|.+.+.+|. .+..+++|++|++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 6666666666666677777777777777776642 5566777777777776643554 3556667777777
Q ss_pred eCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCcccccc-ccCCCCCcEEeccCCCCCC
Q 044005 156 ALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKS-LRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 156 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~ 234 (248)
++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+.+
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 77776655544432 56777777777775 45555556677777777777776 34443 6666777777777776654
Q ss_pred C
Q 044005 235 N 235 (248)
Q Consensus 235 ~ 235 (248)
.
T Consensus 483 ~ 483 (520)
T 2z7x_B 483 S 483 (520)
T ss_dssp C
T ss_pred c
Confidence 3
No 67
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1.5e-19 Score=152.88 Aligned_cols=190 Identities=24% Similarity=0.330 Sum_probs=116.2
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC--CCCc----CCCCCcccccCCccccCCC
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP--PISS----SLGNNRLSGVIPPEIGLLT 105 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~--~~~~----~L~~~~~~~~~~~~~~~l~ 105 (248)
..++|++|++++|......+ .+. .++. |++|++++|.+..... ..+. ++++|.+.+. +. +..++
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~-~~~-~l~~------L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~ 199 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLS-PLS-NMTG------LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-SP-LASLT 199 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCG-GGT-TCTT------CCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC-GG-GGGCT
T ss_pred cCCceeEEECCCCCCccccc-chh-hCCC------CcEEEecCCCcCCchhhccCCCCCEEEccCCccccc-cc-ccCCC
Confidence 34577777777775443322 244 5555 6777777666622211 0111 5666666532 22 66677
Q ss_pred CCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCc
Q 044005 106 HLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSN 182 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 182 (248)
+|++|++++|.+++. ..+++|++|++++|.+. ..+. +..+++|++|++++|.+... +.+..+++|++|++++|
T Consensus 200 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 200 SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred ccceeecccCCCCCCchhhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCC
Confidence 777777777766654 45566777777777766 3333 56667777777777766642 34566677777777777
Q ss_pred ccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCC
Q 044005 183 RLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTY 237 (248)
Q Consensus 183 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 237 (248)
.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|
T Consensus 276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 66543 235566677777777777766666666667777777777777765444
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=9.5e-20 Score=152.13 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=132.6
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCC--CCc----CCCCCcccccCCccccCCC
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPP--ISS----SLGNNRLSGVIPPEIGLLT 105 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~--~~~----~L~~~~~~~~~~~~~~~l~ 105 (248)
.+++|++|++++|.+.+..+ +. .+++ |++|++++|.++..... .+. ++++|.+.+. + .+..++
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~--~~-~l~~------L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~ 129 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP--LK-NLTK------ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-T-PLAGLS 129 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GT-TCCS------CCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC-G-GGTTCT
T ss_pred ccCCCCEEEccCCcCCCChh--Hc-cCCC------CCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc-h-hhcCCC
Confidence 35689999999999875433 66 6777 99999999998443211 111 8888988863 3 489999
Q ss_pred CCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCc
Q 044005 106 HLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSN 182 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 182 (248)
+|++|++++|.+++. ..+++|++|++++|.++ .++. +..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 130 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN 205 (308)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTS
T ss_pred CCCEEECCCCccCcCccccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCC
Confidence 999999999999877 67889999999999998 4544 8899999999999999985433 788999999999999
Q ss_pred ccCcchhhhhcCCCCCCEEEccCCccCc
Q 044005 183 RLSRSIRAKIGNLMQLTELEMDNNKLFG 210 (248)
Q Consensus 183 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (248)
++.+.. .+..+++|++|++++|.+++
T Consensus 206 ~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 206 QISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ccCccc--cccCCCCCCEEEccCCeeec
Confidence 997654 37889999999999999985
No 69
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1.5e-19 Score=152.92 Aligned_cols=135 Identities=24% Similarity=0.344 Sum_probs=63.7
Q ss_pred ccCCCCCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEE
Q 044005 101 IGLLTHLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGL 177 (248)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 177 (248)
+..+++|++|++++|.++++ ..++.|+++++++|.+.. .+. +..+++|++|++++|.+... +. +..+++|++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L 248 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWL 248 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEE
T ss_pred hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEE
Confidence 44555555555555555443 334445555555555442 211 44455555555555555432 21 4445555555
Q ss_pred EecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCC
Q 044005 178 YLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEP 243 (248)
Q Consensus 178 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l 243 (248)
++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..|+.++.+
T Consensus 249 ~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 249 EIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred ECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 5555555332 2344455555555555555422 234445555555555555544444433333
No 70
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=4.1e-21 Score=172.45 Aligned_cols=203 Identities=20% Similarity=0.285 Sum_probs=158.8
Q ss_pred ccCCcccCCCCC-----cccee-eeCCCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCC
Q 044005 12 LLSLWNLYPINA-----TNFGI-HCNSAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPIS 85 (248)
Q Consensus 12 ~~~~w~~~~~~~-----~~~~~-~c~~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~ 85 (248)
....|......| .|.++ .|. .++|+.|++++|++.+ +|..+. +. |++|++++|.++.+.+..+
T Consensus 32 ~l~~W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l~---~~------L~~L~Ls~N~l~~ip~~l~ 100 (571)
T 3cvr_A 32 AWDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDNLP---PQ------ITVLEITQNALISLPELPA 100 (571)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSCCC---TT------CSEEECCSSCCSCCCCCCT
T ss_pred HHHHHhccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHhHc---CC------CCEEECcCCCCcccccccC
Confidence 345676533337 68888 675 3479999999999986 777665 56 9999999999954442222
Q ss_pred c----CCCCCcccccCCccccCCCCCcEEEccCCccCCC-CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcC
Q 044005 86 S----SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYL 160 (248)
Q Consensus 86 ~----~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 160 (248)
. ++++|.+++ +|. +.. +|++|++++|.++++ ..+++|++|++++|.+++ +|. .+++|++|++++|.+
T Consensus 101 ~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 101 SLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred CCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence 2 889999986 676 655 999999999999877 456789999999999984 665 578999999999999
Q ss_pred CCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCC-------CEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 161 SGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQL-------TELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
++ +|. +. ++|++|++++|.|+ .+|. +.. +| ++|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 86 555 55 89999999999997 4555 443 67 99999999999 68888888999999999999998
Q ss_pred CCCCCCCCC
Q 044005 234 GNTYEHIPE 242 (248)
Q Consensus 234 ~~~~~~i~~ 242 (248)
+.+|..++.
T Consensus 244 ~~~p~~l~~ 252 (571)
T 3cvr_A 244 SRIRESLSQ 252 (571)
T ss_dssp HHHHHHHHH
T ss_pred CcCHHHHHH
Confidence 777665443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=4.4e-21 Score=169.84 Aligned_cols=193 Identities=21% Similarity=0.167 Sum_probs=156.6
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc----CCCCCcccccCCccccCCCCC
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS----SLGNNRLSGVIPPEIGLLTHL 107 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~----~L~~~~~~~~~~~~~~~l~~L 107 (248)
.+++|++|+|++|.+.+..+ +. .++. |++|+|++|.++++... +. ++++|.+.+..+. .+++|
T Consensus 56 ~l~~L~~L~Ls~N~l~~~~~--l~-~l~~------L~~L~Ls~N~l~~l~~~-~~L~~L~L~~N~l~~~~~~---~l~~L 122 (487)
T 3oja_A 56 PFTKLELLNLSSNVLYETLD--LE-SLST------LRTLDLNNNYVQELLVG-PSIETLHAANNNISRVSCS---RGQGK 122 (487)
T ss_dssp TCTTCCEEECTTSCCEEEEE--CT-TCTT------CCEEECCSSEEEEEEEC-TTCCEEECCSSCCCCEEEC---CCSSC
T ss_pred CCCCCCEEEeeCCCCCCCcc--cc-cCCC------CCEEEecCCcCCCCCCC-CCcCEEECcCCcCCCCCcc---ccCCC
Confidence 46689999999999987655 66 7788 99999999998432211 11 8888998865443 46889
Q ss_pred cEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhc-CCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecC
Q 044005 108 KHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLR-KVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYS 181 (248)
Q Consensus 108 ~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 181 (248)
++|++++|.+++. ..++.|++|++++|.+++..|..+. .+++|++|++++|.+++. + ....+++|++|++++
T Consensus 123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSS 200 (487)
T ss_dssp EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCS
T ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCC
Confidence 9999999999876 5578999999999999977777765 789999999999999855 3 344689999999999
Q ss_pred cccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC-CCCCCCCC
Q 044005 182 NRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN-GNTYEHIP 241 (248)
Q Consensus 182 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~i~ 241 (248)
|.+++..+ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..++
T Consensus 201 N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 201 NKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp SCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred CCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 99986444 5888999999999999999 47888889999999999999987 34444333
No 72
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=3.2e-19 Score=156.95 Aligned_cols=183 Identities=22% Similarity=0.284 Sum_probs=93.2
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc---------CCCCCcccccCCccccC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS---------SLGNNRLSGVIPPEIGL 103 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~---------~L~~~~~~~~~~~~~~~ 103 (248)
+++|++|++++|.+.+. ..+. .+++ |++|++++|.+ .+..+. ++++|.+.+. +.+..
T Consensus 176 l~~L~~L~l~~n~l~~~--~~l~-~l~~------L~~L~l~~n~l---~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~ 241 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI--SVLA-KLTN------LESLIATNNQI---SDITPLGILTNLDELSLNGNQLKDI--GTLAS 241 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGG-GCTT------CSEEECCSSCC---CCCGGGGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred CCCCCEEECcCCcCCCC--hhhc-cCCC------CCEEEecCCcc---cccccccccCCCCEEECCCCCcccc--hhhhc
Confidence 44677777777766532 2244 4455 66666666665 222111 5555555432 34555
Q ss_pred CCCCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEec
Q 044005 104 LTHLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLY 180 (248)
Q Consensus 104 l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 180 (248)
+++|++|++++|.+++. ..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 242 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred CCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence 55666666666655544 344555555555555552 222 4455555555555555553222 4455555555555
Q ss_pred CcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCC
Q 044005 181 SNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTY 237 (248)
Q Consensus 181 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 237 (248)
+|.+.+..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..|
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 555544333 34455555555555555432 234445555555555555544333
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.2e-19 Score=150.33 Aligned_cols=171 Identities=23% Similarity=0.315 Sum_probs=141.1
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEc
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHI 112 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 112 (248)
+.+|+.|++++|.+... +.+. .+++ |++|++++|++ . .+++ +..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~-~l~~------L~~L~L~~n~l---~--------------~~~~-l~~l~~L~~L~l 97 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQ-YLPN------VTKLFLNGNKL---T--------------DIKP-LANLKNLGWLFL 97 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGG-GCTT------CCEEECCSSCC---C--------------CCGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccC--hhHh-cCCC------CCEEEccCCcc---C--------------CCcc-cccCCCCCEEEC
Confidence 34789999999988643 2355 6667 99999999888 2 2333 889999999999
Q ss_pred cCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchh
Q 044005 113 DMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIR 189 (248)
Q Consensus 113 ~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 189 (248)
++|.++++ ..+++|++|++++|.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+
T Consensus 98 ~~n~l~~~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 98 DENKVKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CSSCCCCGGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CCCcCCCChhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 99999876 778899999999999984 4 4678899999999999999854 678889999999999999976544
Q ss_pred hhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCC
Q 044005 190 AKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYE 238 (248)
Q Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 238 (248)
+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+......
T Consensus 174 --l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred --hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCccc
Confidence 8889999999999999985 44 488999999999999998754433
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=7.1e-20 Score=163.87 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCCCCcEEEecCcccCcchhh---hhcCCCCCCEEEccCCccCcccc--ccccCCCCCcEEeccCCCCCCCCCCCCCCCC
Q 044005 170 SLSNLKGLYLYSNRLSRSIRA---KIGNLMQLTELEMDNNKLFGQIP--KSLRNFTSLNRVHLEQNHLNGNTYEHIPEPN 244 (248)
Q Consensus 170 ~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~ 244 (248)
.+++|++|++++|.+.+..|. .++.+++|++|++++|.+++..+ ..+..+++|++|++++|.++ .+|+.++.+.
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 466777777777777655432 25566777777777777764321 34667778888888888776 6677666655
Q ss_pred CCC
Q 044005 245 FHR 247 (248)
Q Consensus 245 ~l~ 247 (248)
.|+
T Consensus 411 ~L~ 413 (549)
T 2z81_A 411 KMR 413 (549)
T ss_dssp TCC
T ss_pred ccc
Confidence 543
No 75
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=3e-19 Score=139.58 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=128.8
Q ss_pred HHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCccCCC---CCCCCccEEEcCC
Q 044005 57 QFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS---ENLKFLSTVDLSK 133 (248)
Q Consensus 57 ~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~ 133 (248)
.++. |++|++++|.+ ..++ .+..+++|++|++++|.++.. ..+++|++|++++
T Consensus 42 ~l~~------L~~L~l~~n~i-----------------~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 42 QMNS------LTYITLANINV-----------------TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMG 97 (197)
T ss_dssp HHHT------CCEEEEESSCC-----------------SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEEC
T ss_pred hcCC------ccEEeccCCCc-----------------cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeEC
Confidence 6777 99999999998 2344 588899999999999988766 7789999999999
Q ss_pred CccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcc-cCcchhhhhcCCCCCCEEEccCCccCccc
Q 044005 134 NKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNR-LSRSIRAKIGNLMQLTELEMDNNKLFGQI 212 (248)
Q Consensus 134 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (248)
|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+++ +
T Consensus 98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~ 174 (197)
T 4ezg_A 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-Y 174 (197)
T ss_dssp TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-C
T ss_pred CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-h
Confidence 99987678889999999999999999997778889999999999999998 65 455 68889999999999999985 4
Q ss_pred cccccCCCCCcEEeccCCCCCC
Q 044005 213 PKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 213 ~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
+ .+..+++|+.|++++|.+.+
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp T-TGGGCSSCCEEEECBC----
T ss_pred H-HhccCCCCCEEEeeCcccCC
Confidence 4 67899999999999999864
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=9.6e-22 Score=168.99 Aligned_cols=132 Identities=19% Similarity=0.261 Sum_probs=68.1
Q ss_pred CCCcEEEccCCccCCC---------CCCCCccEEEcCCCccCCC-----CchhhcCCCCcceEEeeCCcCC----CCCcc
Q 044005 105 THLKHLHIDMNKLHGS---------ENLKFLSTVDLSKNKFSSS-----MPNSLRKVKPLLSLGFALNYLS----GVIAP 166 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~---------~~~~~L~~L~ls~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~----~~~~~ 166 (248)
++|++|++++|.++.. ..++.|++|++++|.+... .+..+..+++|++|++++|.++ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 4555555555555311 2344555555555555411 1224445555666666666553 23444
Q ss_pred cccCCCCCcEEEecCcccCcc----hhhhhc--CCCCCCEEEccCCccCc----cccccc-cCCCCCcEEeccCCCCCCC
Q 044005 167 SIGSLSNLKGLYLYSNRLSRS----IRAKIG--NLMQLTELEMDNNKLFG----QIPKSL-RNFTSLNRVHLEQNHLNGN 235 (248)
Q Consensus 167 ~~~~l~~L~~L~l~~n~i~~~----~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~~~~~ 235 (248)
.+..+++|++|++++|.+++. ++..+. .+++|++|++++|.+++ .++..+ .++++|+.|++++|.+++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 555556666666666665433 233332 25566666666666654 244444 3456666666666666544
Q ss_pred C
Q 044005 236 T 236 (248)
Q Consensus 236 ~ 236 (248)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 3
No 77
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=6.2e-19 Score=155.12 Aligned_cols=184 Identities=21% Similarity=0.346 Sum_probs=152.3
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCC--CCCc----CCCCCcccccCCccccCCC
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP--PISS----SLGNNRLSGVIPPEIGLLT 105 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~--~~~~----~L~~~~~~~~~~~~~~~l~ 105 (248)
.+++|++|++++|.+.+..+ +. .++. |++|++++|.++.... ..+. ++++|.+.+..+ +..++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~-~l~~------L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LG-ILTN------LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GG-GCTT------CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred cCCCCCEEEecCCccccccc--cc-ccCC------CCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 35689999999999886544 55 6677 9999999998843311 1111 888888876433 88999
Q ss_pred CCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCc
Q 044005 106 HLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSN 182 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 182 (248)
+|++|++++|.+++. ..++.|++|++++|.+.+ ++. +..+++|++|++++|.+.+..| +..+++|++|++++|
T Consensus 266 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 266 KLTELKLGANQISNISPLAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341 (466)
T ss_dssp TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred CCCEEECCCCccCccccccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC
Confidence 999999999999876 678899999999999984 433 7889999999999999996644 678999999999999
Q ss_pred ccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCC
Q 044005 183 RLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 183 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
.+.+. ..+..+++|++|++++|.+++..| +..+++|+.|++++|.+++
T Consensus 342 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 342 KVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99764 467889999999999999997665 7899999999999999985
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=1.2e-20 Score=158.94 Aligned_cols=209 Identities=13% Similarity=0.164 Sum_probs=129.2
Q ss_pred ccceeeeCCCCcEEEEeeCCCccccccCcchhHHH--HHHHhhhceeEEEeccccccccCCCCCc----------CCCCC
Q 044005 24 TNFGIHCNSAKRVISINLNTIGLKVRFTNSHSHQF--LILHILIKASIYYLASYRLKLATPPISS----------SLGNN 91 (248)
Q Consensus 24 ~~~~~~c~~~~~l~~L~l~~~~l~~~~~~~~~~~l--~~L~~l~~L~~L~ls~n~~~~~~~~~~~----------~L~~~ 91 (248)
.|.++.|+ ...++.++++++.+. +..+. .+ +. ++.|++++|.+ .+..+. ++++|
T Consensus 38 ~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~-~~~~~~------l~~L~l~~n~l---~~~~~~~~~~~~L~~L~L~~~ 103 (336)
T 2ast_B 38 RWYRLASD-ESLWQTLDLTGKNLH---PDVTG-RLLSQG------VIAFRCPRSFM---DQPLAEHFSPFRVQHMDLSNS 103 (336)
T ss_dssp HHHHHHTC-STTSSEEECTTCBCC---HHHHH-HHHHTT------CSEEECTTCEE---CSCCCSCCCCBCCCEEECTTC
T ss_pred HHHHHhcC-chhheeeccccccCC---HHHHH-hhhhcc------ceEEEcCCccc---cccchhhccCCCCCEEEccCC
Confidence 45565554 334777788777765 23333 33 44 77777777766 333222 66666
Q ss_pred ccccc-CCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCC-ccCCC-CchhhcCCCCcceEEeeCC-cCCC
Q 044005 92 RLSGV-IPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKN-KFSSS-MPNSLRKVKPLLSLGFALN-YLSG 162 (248)
Q Consensus 92 ~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~ 162 (248)
.+.+. ++..+..+++|++|++++|.+++. ..+++|++|++++| .+++. ++..+..+++|++|++++| .+++
T Consensus 104 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 104 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 66544 556667777777777777776532 55677777777777 45532 4555666777777777777 6663
Q ss_pred C-CcccccCCC-CCcEEEecCc--ccC-cchhhhhcCCCCCCEEEccCCc-cCccccccccCCCCCcEEeccCC-CCCCC
Q 044005 163 V-IAPSIGSLS-NLKGLYLYSN--RLS-RSIRAKIGNLMQLTELEMDNNK-LFGQIPKSLRNFTSLNRVHLEQN-HLNGN 235 (248)
Q Consensus 163 ~-~~~~~~~l~-~L~~L~l~~n--~i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n-~~~~~ 235 (248)
. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++| .+.+.
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 2 345556666 7777777777 343 3445556667777777777777 55555666677777777777777 34333
Q ss_pred CCCCCCCCCCC
Q 044005 236 TYEHIPEPNFH 246 (248)
Q Consensus 236 ~~~~i~~l~~l 246 (248)
....++.++.|
T Consensus 264 ~~~~l~~~~~L 274 (336)
T 2ast_B 264 TLLELGEIPTL 274 (336)
T ss_dssp GGGGGGGCTTC
T ss_pred HHHHHhcCCCC
Confidence 33344444443
No 79
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=1.6e-18 Score=152.25 Aligned_cols=189 Identities=17% Similarity=0.223 Sum_probs=112.6
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccC-CCCCc----CCCCCcccccCCccccCCCCC
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLAT-PPISS----SLGNNRLSGVIPPEIGLLTHL 107 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~-~~~~~----~L~~~~~~~~~~~~~~~l~~L 107 (248)
+++|++|++++|.+.+. | .+. .++. |++|++++|.++++. +..+. ++++|.+++. + +..+++|
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~-~l~~------L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIE-KLTG------LTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGG-GCTT------CSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred cCCCCEEEccCCCcccC-h-hhc-ccCC------CCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 45677777777777643 3 455 5666 666666666663321 00011 5555555542 2 5555666
Q ss_pred cEEEccCCccCCC--CCCCCccEEEcCCCccCC---------------------CCchhhcCCCCcceEEeeCCcCCCCC
Q 044005 108 KHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSS---------------------SMPNSLRKVKPLLSLGFALNYLSGVI 164 (248)
Q Consensus 108 ~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~~~ 164 (248)
++|++++|.++++ ..+++|++|++++|.+++ .+ .+..+++|++|++++|.+++ +
T Consensus 109 ~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 109 TYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C
T ss_pred CEEECCCCcCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e
Confidence 6666666655544 344455555555555442 22 24455566666666666664 2
Q ss_pred cccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCC
Q 044005 165 APSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPN 244 (248)
Q Consensus 165 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~ 244 (248)
| +..+++|+.|++++|.+++. .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++..+..+..+.
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence 2 55666777777777777543 25667777888888887775 44 66778888888888888765555555443
No 80
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=3e-19 Score=140.55 Aligned_cols=159 Identities=21% Similarity=0.212 Sum_probs=134.2
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEc
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHI 112 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 112 (248)
.++|++|++++|.+.+..+..+. .++. |++|++++|++ . ...+..+..+++|++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~-~l~~------L~~L~l~~n~l---~-------------~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFD-ELTS------LTQLYLGGNKL---Q-------------SLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTT-TCTT------CSEEECCSSCC---C-------------CCCTTTTTTCTTCCEEEC
T ss_pred CCCCcEEEcCCCccCcCChhhhc-cccc------CcEEECCCCcc---C-------------ccChhhcCCCCCcCEEEC
Confidence 45899999999999865555677 7888 99999999998 2 223445788999999999
Q ss_pred cCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcc
Q 044005 113 DMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRS 187 (248)
Q Consensus 113 ~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~ 187 (248)
++|.++++ ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 99999776 567899999999999985555668899999999999999997666668889999999999998754
Q ss_pred hhhhhcCCCCCCEEEccCCccCccccccccCCCC
Q 044005 188 IRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTS 221 (248)
Q Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 221 (248)
.+++|+.|++..|.+++.+|..++.++.
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4568899999999999999988887754
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=9.8e-19 Score=158.33 Aligned_cols=174 Identities=23% Similarity=0.332 Sum_probs=141.7
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEc
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHI 112 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 112 (248)
+.+|+.|++++|.+.. + +.+. .+++ |+.|+|++|.+ .+ +++ +..+++|++|++
T Consensus 42 L~~L~~L~l~~n~i~~-l-~~l~-~l~~------L~~L~Ls~N~l---~~--------------~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-V-QGIQ-YLPN------VTKLFLNGNKL---TD--------------IKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HTTCCCCBCTTCCCCC-C-TTGG-GCTT------CCEEECTTSCC---CC--------------CGG-GGGCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCC-C-hHHc-cCCC------CCEEEeeCCCC---CC--------------Chh-hccCCCCCEEEC
Confidence 4578899999998864 2 2466 6667 99999999888 22 233 788999999999
Q ss_pred cCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchh
Q 044005 113 DMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIR 189 (248)
Q Consensus 113 ~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 189 (248)
++|.++.+ ..+++|++|++++|.+.. + +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|
T Consensus 95 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 95 DENKIKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CSSCCCCCTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred cCCCCCCChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 99998776 677889999999999984 4 4578899999999999999854 678889999999999999987655
Q ss_pred hhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCC
Q 044005 190 AKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIP 241 (248)
Q Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~ 241 (248)
+..+++|++|+|++|.+++ + ..+..+++|+.|++++|.+.+.....+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred --hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCCcccccc
Confidence 8889999999999999985 3 4688899999999999998765444433
No 82
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=4.9e-18 Score=149.19 Aligned_cols=175 Identities=18% Similarity=0.169 Sum_probs=120.6
Q ss_pred ccccCcchhHHHHHHHhhhceeEEEeccccccccCC--CCCc----CCCCCcccccCCccccCCCCCcEEEccCCccCCC
Q 044005 47 KVRFTNSHSHQFLILHILIKASIYYLASYRLKLATP--PISS----SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS 120 (248)
Q Consensus 47 ~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~--~~~~----~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 120 (248)
....+..++ .++. |++|++++|.+++..+ ..+. ++++|.+++. + +..+++|++|++++|.++++
T Consensus 31 ~~~~~~~~~-~l~~------L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 31 QATDTISEE-QLAT------LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp CTTSEEEHH-HHTT------CCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC
T ss_pred CcccccChh-HcCC------CCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee
Confidence 333445677 7888 9999999999944321 0111 8999999864 3 89999999999999999876
Q ss_pred --CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCc----------------
Q 044005 121 --ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSN---------------- 182 (248)
Q Consensus 121 --~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---------------- 182 (248)
..+++|++|++++|.+++ ++ +..+++|++|++++|.+++. + +..+++|++|++++|
T Consensus 101 ~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~ 174 (457)
T 3bz5_A 101 DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTT 174 (457)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCE
T ss_pred ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCE
Confidence 778899999999999984 54 78899999999999998753 2 444555555555554
Q ss_pred ------ccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCC
Q 044005 183 ------RLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFH 246 (248)
Q Consensus 183 ------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l 246 (248)
.+++ +| +..+++|++|++++|.+++. .+..+++|+.|++++|.+++ +| ++.+..|
T Consensus 175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L 235 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235 (457)
T ss_dssp EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred EECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence 4433 22 44455555666666555532 25566677777777777764 34 4444433
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=5.8e-19 Score=159.87 Aligned_cols=173 Identities=19% Similarity=0.185 Sum_probs=127.0
Q ss_pred cEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccC
Q 044005 35 RVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDM 114 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 114 (248)
.+++|||++|.|+...+..|. .+++ |++|||++|++ +...+.+|.++++|++|++++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~-~l~~------L~~L~Ls~N~i----------------~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFF-SFPE------LQVLDLSRCEI----------------QTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTT-TCTT------CCEEECTTCCC----------------CEECTTTTTTCTTCCEEECTT
T ss_pred CCCEEEeeCCCCCCCCHHHHh-CCCC------CCEEECCCCcC----------------CCcChhHhcCCCCCCEEEccC
Confidence 789999999999866667788 8888 99999999888 223456788889999999999
Q ss_pred CccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCC-CcccccCCCCCcEEEecCcccCcch
Q 044005 115 NKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV-IAPSIGSLSNLKGLYLYSNRLSRSI 188 (248)
Q Consensus 115 n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~~ 188 (248)
|+++++ ..+++|++|++++|.+++..+..++.+++|++|++++|.+... .|..+..+++|++|++++|++.+..
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 988765 5678899999999988854445688888999999999888643 4667788888999999999887665
Q ss_pred hhhhcCCCC----CCEEEccCCccCccccccccCCCCCcEEeccCCC
Q 044005 189 RAKIGNLMQ----LTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNH 231 (248)
Q Consensus 189 ~~~~~~l~~----L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 231 (248)
+..+..+.+ ...++++.|.++...+ .......+..+++..|.
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~-~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTCEEEEEEEESCC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCc-ccccchhhhhhhhhccc
Confidence 655544332 3467777777764322 22233345555555553
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=3.5e-18 Score=149.97 Aligned_cols=184 Identities=21% Similarity=0.226 Sum_probs=113.2
Q ss_pred cEEEEeeCCCccccccCcchhHHHHHHHhhh-------ceeEEEeccccccccCCCCCc-----CCCCCcccccCCcccc
Q 044005 35 RVISINLNTIGLKVRFTNSHSHQFLILHILI-------KASIYYLASYRLKLATPPISS-----SLGNNRLSGVIPPEIG 102 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~-------~L~~L~ls~n~~~~~~~~~~~-----~L~~~~~~~~~~~~~~ 102 (248)
+|++|++++|.+.+.+|..++ .+..|+.+. ++++|++++|.++++.. +|. ++++|.+++ +|..
T Consensus 35 ~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~-lp~~-- 109 (454)
T 1jl5_A 35 SKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-LPPHLESLVASCNSLTE-LPEL-- 109 (454)
T ss_dssp CHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSS-CCCC--
T ss_pred chhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCCC-CcCCCCEEEccCCcCCc-cccc--
Confidence 444555555555555555444 444433222 46899999999843222 333 788888886 5643
Q ss_pred CCCCCcEEEccCCccCCCCCC-CCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecC
Q 044005 103 LLTHLKHLHIDMNKLHGSENL-KFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYS 181 (248)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 181 (248)
+++|++|++++|.++++... ++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. ..+|++|++++
T Consensus 110 -~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~ 182 (454)
T 1jl5_A 110 -PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGN 182 (454)
T ss_dssp -CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred -cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcC
Confidence 36788888888888877444 578888888888873 66 47778888888888887774 3332 23666666666
Q ss_pred cccCcchhhhhcCCCCCCEEEccCCccCc-------------------cccccccCCCCCcEEeccCCCCC
Q 044005 182 NRLSRSIRAKIGNLMQLTELEMDNNKLFG-------------------QIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 182 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
|.+.+ +| .++.+++|++|++++|.+++ .+| .+..+++|++|++++|.++
T Consensus 183 n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 183 NQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred CcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCC
Confidence 66654 33 35555555555555555542 333 2455556666666666555
No 85
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=137.77 Aligned_cols=129 Identities=21% Similarity=0.244 Sum_probs=85.2
Q ss_pred CCcEEEccCCccCCC------CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEe
Q 044005 106 HLKHLHIDMNKLHGS------ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYL 179 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (248)
.+++|++++|.++++ ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 346667777666543 34566777777777766444446666777777777777776555555666777777777
Q ss_pred cCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCC
Q 044005 180 YSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 180 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 7777766556666667777777777777765556666667777777777776653
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=144.35 Aligned_cols=201 Identities=19% Similarity=0.163 Sum_probs=135.4
Q ss_pred cEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCC------CCc----CCCCCcccccCC----cc
Q 044005 35 RVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPP------ISS----SLGNNRLSGVIP----PE 100 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~------~~~----~L~~~~~~~~~~----~~ 100 (248)
+++.+.+.++.+..... . .+...-.+.+|++|++++|.+.+.... .+. ++++|.+.+..+ ..
T Consensus 65 ~l~~l~l~~~~~~~~~~---~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLL---V-GALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCEEEECSCCCBHHHH---H-HHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred ceeEEEEeCCcCCHHHH---H-HHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 57788888887764322 2 222233344599999999998332211 111 667777775444 33
Q ss_pred ccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCC--Cc--hhhcCCCCcceEEeeCCcCCCCCcc----c
Q 044005 101 IGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSS--MP--NSLRKVKPLLSLGFALNYLSGVIAP----S 167 (248)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~--~~--~~~~~l~~L~~L~l~~n~l~~~~~~----~ 167 (248)
+..+++|++|++++|.+++. ..+++|++|++++|.+.+. ++ ..+..+++|++|++++|.++. ++. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence 45688888888888888665 4677888888888876532 22 223567888888888888863 222 2
Q ss_pred ccCCCCCcEEEecCcccCcchhhhhcCC---CCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCC-CCCCCCCCC
Q 044005 168 IGSLSNLKGLYLYSNRLSRSIRAKIGNL---MQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG-NTYEHIPEP 243 (248)
Q Consensus 168 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~i~~l 243 (248)
+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|.+++ ..+..+..+
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L 296 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEV 296 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCc
Confidence 4567888888888888877656655555 58888888888888 6666653 788889999888885 333344333
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1.1e-18 Score=158.03 Aligned_cols=175 Identities=18% Similarity=0.172 Sum_probs=140.8
Q ss_pred EeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCccC
Q 044005 39 INLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLH 118 (248)
Q Consensus 39 L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 118 (248)
.+-++.+++ .+|..+. +. +++|||++|+| +...+..|.++++|++|++++|.|+
T Consensus 36 ~~c~~~~l~-~vP~~lp---~~------~~~LdLs~N~i----------------~~l~~~~f~~l~~L~~L~Ls~N~i~ 89 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP---FS------TKNLDLSFNPL----------------RHLGSYSFFSFPELQVLDLSRCEIQ 89 (635)
T ss_dssp EECTTSCCS-SCCSSSC---TT------CCEEECTTSCC----------------CEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EECCCCCcC-ccCCCCC---cC------CCEEEeeCCCC----------------CCCCHHHHhCCCCCCEEECCCCcCC
Confidence 344444554 5676665 46 99999999998 2334568999999999999999997
Q ss_pred CC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCc-chhhhh
Q 044005 119 GS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSR-SIRAKI 192 (248)
Q Consensus 119 ~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~ 192 (248)
++ ..+++|++|++++|+++...+..|.++++|++|++++|.+++..+..++.+++|++|++++|.+.+ ..|..+
T Consensus 90 ~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~ 169 (635)
T 4g8a_A 90 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 169 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh
Confidence 65 678899999999999985555678999999999999999997666678999999999999999965 356788
Q ss_pred cCCCCCCEEEccCCccCccccccccCCCCC----cEEeccCCCCCCCCCCC
Q 044005 193 GNLMQLTELEMDNNKLFGQIPKSLRNFTSL----NRVHLEQNHLNGNTYEH 239 (248)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~ 239 (248)
..+++|++|++++|.+++..+..+..+.++ ..++++.|.+....+..
T Consensus 170 ~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 170 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred ccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence 889999999999999997777776655444 46888999887444433
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=5e-20 Score=158.26 Aligned_cols=205 Identities=17% Similarity=0.162 Sum_probs=156.0
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc------------------CCCCCccc
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS------------------SLGNNRLS 94 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~------------------~L~~~~~~ 94 (248)
+++|++|+|++|.+.+..+..++ ..++.+.+|++|+|++|.+..+.+.+|. ++++|.+.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~---~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLS---ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHH---HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred CCCccEEECCCCCCCHHHHHHHH---HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 45788999999888766554443 2233344488888888755332333331 77888887
Q ss_pred c----cCCccccCCCCCcEEEccCCccCCC---------CCC---------CCccEEEcCCCccC-CCCc---hhhcCCC
Q 044005 95 G----VIPPEIGLLTHLKHLHIDMNKLHGS---------ENL---------KFLSTVDLSKNKFS-SSMP---NSLRKVK 148 (248)
Q Consensus 95 ~----~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~---------~~L~~L~ls~n~l~-~~~~---~~~~~l~ 148 (248)
. .++..+..+++|++|++++|.++.. ..+ +.|++|++++|.+. ..++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 6 4677888999999999999998633 222 89999999999987 3344 4667889
Q ss_pred CcceEEeeCCcCCC-----CCcccccCCCCCcEEEecCcccC----cchhhhhcCCCCCCEEEccCCccCcc----cccc
Q 044005 149 PLLSLGFALNYLSG-----VIAPSIGSLSNLKGLYLYSNRLS----RSIRAKIGNLMQLTELEMDNNKLFGQ----IPKS 215 (248)
Q Consensus 149 ~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 215 (248)
+|++|++++|.+.. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|++++|.+++. ++..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 99999999999873 23337788999999999999995 55778888999999999999999865 4566
Q ss_pred cc--CCCCCcEEeccCCCCCC----CCCCCC
Q 044005 216 LR--NFTSLNRVHLEQNHLNG----NTYEHI 240 (248)
Q Consensus 216 l~--~l~~L~~L~l~~n~~~~----~~~~~i 240 (248)
+. .+++|+.|++++|.+++ .+|..+
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 63 38999999999999986 366544
No 89
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.9e-18 Score=135.57 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=87.2
Q ss_pred CCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEe
Q 044005 105 THLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYL 179 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (248)
++|++|++++|.++++ ..+++|++|++++|.++...|..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 4667777777766543 45566777777777776555666777777777777777777444444566777777777
Q ss_pred cCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 180 YSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 180 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777776665666667777777777777777555555666777777777777664
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=1.7e-20 Score=157.88 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=70.5
Q ss_pred CCCCCcccccCCccccCCCCCcEEEccCC-ccCC--C----CCCCCccEEEcCCC-ccCCC-CchhhcCCC-CcceEEee
Q 044005 87 SLGNNRLSGVIPPEIGLLTHLKHLHIDMN-KLHG--S----ENLKFLSTVDLSKN-KFSSS-MPNSLRKVK-PLLSLGFA 156 (248)
Q Consensus 87 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--~----~~~~~L~~L~ls~n-~l~~~-~~~~~~~l~-~L~~L~l~ 156 (248)
++++|.+.+..+..+..+++|++|++++| .+++ + ..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 34444444444445555566666666665 3442 1 34555566666555 55422 344445555 55555555
Q ss_pred CCc--CC-CCCcccccCCCCCcEEEecCcc-cCcchhhhhcCCCCCCEEEccCCc-cCccccccccCCCCCcEEeccCC
Q 044005 157 LNY--LS-GVIAPSIGSLSNLKGLYLYSNR-LSRSIRAKIGNLMQLTELEMDNNK-LFGQIPKSLRNFTSLNRVHLEQN 230 (248)
Q Consensus 157 ~n~--l~-~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n 230 (248)
+|. ++ ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.+.....+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 552 22 1233344445555555555555 443444445555555555555552 22222223444555555555554
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=6.6e-18 Score=135.06 Aligned_cols=111 Identities=24% Similarity=0.262 Sum_probs=65.9
Q ss_pred CccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCC
Q 044005 98 PPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLS 172 (248)
Q Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 172 (248)
+..+..+++|++|++++|.++.+ ..+++|++|++++|.++...+..+..+++|++|++++|.+. .+|..+..++
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 135 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC
Confidence 44555566666666666665444 34555666666666665333344556666666666666666 4555556666
Q ss_pred CCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccC
Q 044005 173 NLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLF 209 (248)
Q Consensus 173 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (248)
+|++|++++|++.+..+..+..+++|++|++++|.+.
T Consensus 136 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6666666666665444445556666666666666655
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.4e-18 Score=148.13 Aligned_cols=171 Identities=22% Similarity=0.194 Sum_probs=118.3
Q ss_pred EEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCcccc-CCCCCcEEEccCC
Q 044005 37 ISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIG-LLTHLKHLHIDMN 115 (248)
Q Consensus 37 ~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~-~l~~L~~L~l~~n 115 (248)
+.++++++++. .+|..+. +. ++.|+|++|++ . +..+..+. .+++|++|++++|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~------l~~L~Ls~N~l---~-------------~l~~~~~~~~l~~L~~L~L~~N 74 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SY------TALLDLSHNNL---S-------------RLRAEWTPTRLTNLHSLLLSHN 74 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TT------CSEEECCSSCC---C-------------EECTTSSSSCCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC---CC------CCEEECCCCCC---C-------------ccChhhhhhcccccCEEECCCC
Confidence 35677777766 3565555 45 77888888877 2 22334455 7788888888888
Q ss_pred ccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhh
Q 044005 116 KLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRA 190 (248)
Q Consensus 116 ~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 190 (248)
.++++ ..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+.
T Consensus 75 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 77654 5667788888888887744455677788888888888888766667777788888888888888654333
Q ss_pred hh---cCCCCCCEEEccCCccCccccccccCCCC--CcEEeccCCCCC
Q 044005 191 KI---GNLMQLTELEMDNNKLFGQIPKSLRNFTS--LNRVHLEQNHLN 233 (248)
Q Consensus 191 ~~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~ 233 (248)
.+ ..+++|++|+|++|.+++..+..+..++. ++.|++++|.+.
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 34 45778888888888887544455666665 367888887764
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=1.6e-18 Score=139.28 Aligned_cols=172 Identities=15% Similarity=0.132 Sum_probs=140.2
Q ss_pred CCCcEEEEeeCCCc-cccccCcchhHHHHHHHhhhceeEEEecc-ccccccCCCCCcCCCCCcccccCCccccCCCCCcE
Q 044005 32 SAKRVISINLNTIG-LKVRFTNSHSHQFLILHILIKASIYYLAS-YRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKH 109 (248)
Q Consensus 32 ~~~~l~~L~l~~~~-l~~~~~~~~~~~l~~L~~l~~L~~L~ls~-n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~ 109 (248)
..++|++|++++|. +....+..+. .+++ |++|++++ |.+ +...+..+..+++|++
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~-~l~~------L~~L~l~~~n~l----------------~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFY-NLSK------VTHIEIRNTRNL----------------TYIDPDALKELPLLKF 109 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEE-SCTT------CCEEEEEEETTC----------------CEECTTSEECCTTCCE
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcC-CCcC------CcEEECCCCCCe----------------eEcCHHHhCCCCCCCE
Confidence 45689999999997 7755555777 8888 99999998 888 2233467889999999
Q ss_pred EEccCCccCCC---CCCCCcc---EEEcCCC-ccCCCCchhhcCCCCcc-eEEeeCCcCCCCCcccccCCCCCcEEEecC
Q 044005 110 LHIDMNKLHGS---ENLKFLS---TVDLSKN-KFSSSMPNSLRKVKPLL-SLGFALNYLSGVIAPSIGSLSNLKGLYLYS 181 (248)
Q Consensus 110 L~l~~n~l~~~---~~~~~L~---~L~ls~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 181 (248)
|++++|.++++ ..++.|+ +|++++| .++...+..+..+++|+ +|++++|.++ .+|.......+|+.|++++
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred EeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 99999998776 4566677 9999999 88854555688999999 9999999998 4555444448999999999
Q ss_pred cc-cCcchhhhhcCC-CCCCEEEccCCccCccccccccCCCCCcEEeccCC
Q 044005 182 NR-LSRSIRAKIGNL-MQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQN 230 (248)
Q Consensus 182 n~-i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 230 (248)
|+ +....+..+..+ ++|++|++++|.++ .+|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 95 876656778888 99999999999998 45544 6789999999876
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2e-17 Score=132.20 Aligned_cols=138 Identities=22% Similarity=0.296 Sum_probs=118.6
Q ss_pred cCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccC
Q 044005 96 VIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGS 170 (248)
Q Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 170 (248)
.+|..+. ++|++|++++|.++++ ..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..
T Consensus 33 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 33 SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCc
Confidence 4454443 8899999999999876 57889999999999998444456789999999999999999766666789
Q ss_pred CCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCC
Q 044005 171 LSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNT 236 (248)
Q Consensus 171 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 236 (248)
+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 999999999999997 67788889999999999999999666677889999999999999997654
No 95
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=2.7e-17 Score=144.32 Aligned_cols=176 Identities=21% Similarity=0.222 Sum_probs=128.7
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc----CCCCCcccccCCccccCCCCCc
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS----SLGNNRLSGVIPPEIGLLTHLK 108 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~----~L~~~~~~~~~~~~~~~l~~L~ 108 (248)
.++|++|++++|.+.+ +|..+ +. |++|++++|.++++....+. ++++|.+++ +| .+..+++|+
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~~----~~------L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~ 156 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPELP----QS------LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLK 156 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCCC----TT------CCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred cCCCCEEEccCCcCCc-ccccc----CC------CcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence 3578888888888876 55432 35 99999999998443322122 888999986 66 599999999
Q ss_pred EEEccCCccCCC-CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcc
Q 044005 109 HLHIDMNKLHGS-ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRS 187 (248)
Q Consensus 109 ~L~l~~n~l~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~ 187 (248)
+|++++|+++++ ....+|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|.. ..+|++|++++|.+. .
T Consensus 157 ~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 157 IIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-E 229 (454)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-S
T ss_pred EEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-c
Confidence 999999999887 445689999999999884 66 57888999999999998875 3332 247788888888776 4
Q ss_pred hhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCC
Q 044005 188 IRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
+| .+..+++|++|++++|.+++ +|.. .++|+.|++++|.++
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred cc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 55 36677778888888777773 3332 255666666666665
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=2.4e-18 Score=140.53 Aligned_cols=165 Identities=19% Similarity=0.257 Sum_probs=110.5
Q ss_pred cEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccC
Q 044005 35 RVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDM 114 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 114 (248)
+++.++++++.+.+.. .+. .++. |++|++++|.+ ..++ .+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~-~l~~------L~~L~l~~n~i-----------------~~l~-~l~~l~~L~~L~L~~ 72 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQK-ELSG------VQNFNGDNSNI-----------------QSLA-GMQFFTNLKELHLSH 72 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHH-HHTT------CSEEECTTSCC-----------------CCCT-TGGGCTTCCEEECCS
T ss_pred HHHHHHhcCCCccccc--chh-hcCc------CcEEECcCCCc-----------------ccch-HHhhCCCCCEEECCC
Confidence 4556667777665322 455 5666 77888877777 1233 466677777777777
Q ss_pred CccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhh
Q 044005 115 NKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAK 191 (248)
Q Consensus 115 n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 191 (248)
|.++++ ..+++|++|++++|.++ .++.. .. ++|++|++++|.+++. +.+..+++|+.|++++|++++. + .
T Consensus 73 N~i~~~~~l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~ 145 (263)
T 1xeu_A 73 NQISDLSPLKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-M 145 (263)
T ss_dssp SCCCCCGGGTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-G
T ss_pred CccCCChhhccCCCCCEEECCCCccC-CcCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-H
Confidence 777665 56677777777777776 34432 22 7777777777777743 3466777777777777777643 3 4
Q ss_pred hcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCC
Q 044005 192 IGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGN 235 (248)
Q Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 235 (248)
+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 66677777777777777744 5566777777777777777644
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=3.8e-17 Score=135.26 Aligned_cols=173 Identities=23% Similarity=0.328 Sum_probs=138.5
Q ss_pred EEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCcc
Q 044005 38 SINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKL 117 (248)
Q Consensus 38 ~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 117 (248)
.+.+....+.+. ..+. .++. |+.|++++|.+ ..+ +.+..+++|++|++++|.+
T Consensus 28 ~~~l~~~~~~~~--~~~~-~l~~------L~~L~l~~~~i-----------------~~~-~~~~~l~~L~~L~L~~n~l 80 (291)
T 1h6t_A 28 KDNLKKKSVTDA--VTQN-ELNS------IDQIIANNSDI-----------------KSV-QGIQYLPNVTKLFLNGNKL 80 (291)
T ss_dssp HHHTTCSCTTSE--ECHH-HHHT------CCEEECTTSCC-----------------CCC-TTGGGCTTCCEEECCSSCC
T ss_pred HHHhcCCCcccc--cchh-hcCc------ccEEEccCCCc-----------------ccC-hhHhcCCCCCEEEccCCcc
Confidence 334555554432 2234 5666 99999999988 122 3478899999999999999
Q ss_pred CCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcC
Q 044005 118 HGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGN 194 (248)
Q Consensus 118 ~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 194 (248)
+++ ..+++|++|++++|.+. .++ .+..+++|++|++++|.+... +.+..+++|++|++++|.+.+. ..+..
T Consensus 81 ~~~~~l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~ 154 (291)
T 1h6t_A 81 TDIKPLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR 154 (291)
T ss_dssp CCCGGGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred CCCcccccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc
Confidence 877 67889999999999998 444 488999999999999999854 5688899999999999999764 56888
Q ss_pred CCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 195 LMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 195 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
+++|++|++++|.+++..+ +..+++|+.|++++|.+++ ++. ++.+..|+
T Consensus 155 l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~ 203 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLD 203 (291)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCS
T ss_pred CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCC
Confidence 9999999999999996444 8899999999999999985 343 66665554
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=1.2e-18 Score=148.51 Aligned_cols=197 Identities=18% Similarity=0.160 Sum_probs=125.1
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhh-ceeEEEeccccccccCCC----C-----Cc----CCCCCcccccCCc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILI-KASIYYLASYRLKLATPP----I-----SS----SLGNNRLSGVIPP 99 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~-~L~~L~ls~n~~~~~~~~----~-----~~----~L~~~~~~~~~~~ 99 (248)
.+|++|++++|.+.+..+..++ ..++.+. +|++|+|++|.++..... . +. ++++|.+++..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~---~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELI---QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHH---HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCceEEEccCCCCChHHHHHHH---HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 3588888888888766554444 3333344 488888888888322100 0 11 6666766655544
Q ss_pred c----ccCC-CCCcEEEccCCccCCC---------CC-CCCccEEEcCCCccCCCC----chhhcCCC-CcceEEeeCCc
Q 044005 100 E----IGLL-THLKHLHIDMNKLHGS---------EN-LKFLSTVDLSKNKFSSSM----PNSLRKVK-PLLSLGFALNY 159 (248)
Q Consensus 100 ~----~~~l-~~L~~L~l~~n~l~~~---------~~-~~~L~~L~ls~n~l~~~~----~~~~~~l~-~L~~L~l~~n~ 159 (248)
. +..+ ++|++|++++|.++.. .. ...|++|++++|.++... +..+..++ +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 3 3334 7788888888887665 22 357888888888777433 23334444 78888888888
Q ss_pred CCCCCccc----ccCC-CCCcEEEecCcccCcc----hhhhhcC-CCCCCEEEccCCccCcccc----ccccCCCCCcEE
Q 044005 160 LSGVIAPS----IGSL-SNLKGLYLYSNRLSRS----IRAKIGN-LMQLTELEMDNNKLFGQIP----KSLRNFTSLNRV 225 (248)
Q Consensus 160 l~~~~~~~----~~~l-~~L~~L~l~~n~i~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L 225 (248)
++...+.. +..+ ++|++|++++|.+... ++..+.. .++|++|++++|.+++..+ ..+..+++|+.|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 77555433 3334 4788888888887642 4444444 3478888888888775433 334567788888
Q ss_pred eccCCCCC
Q 044005 226 HLEQNHLN 233 (248)
Q Consensus 226 ~l~~n~~~ 233 (248)
++++|.+.
T Consensus 259 ~L~~n~l~ 266 (362)
T 3goz_A 259 YLDYDIVK 266 (362)
T ss_dssp EEEHHHHT
T ss_pred EeccCCcc
Confidence 88888743
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.5e-17 Score=129.81 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=122.9
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEc
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHI 112 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 112 (248)
+++|++|++++|.+. .++ .+. .+++ |++|++++|.+ ..++.+..+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~-~l~~------L~~L~l~~n~~------------------~~~~~l~~l~~L~~L~l 95 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIE-YAHN------IKDLTINNIHA------------------TNYNPISGLSNLERLRI 95 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGG-GCTT------CSEEEEESCCC------------------SCCGGGTTCTTCCEEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHh-cCCC------CCEEEccCCCC------------------CcchhhhcCCCCCEEEe
Confidence 448999999999998 444 566 7777 99999999987 23457889999999999
Q ss_pred cCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCc-CCCCCcccccCCCCCcEEEecCcccCc
Q 044005 113 DMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY-LSGVIAPSIGSLSNLKGLYLYSNRLSR 186 (248)
Q Consensus 113 ~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~i~~ 186 (248)
++|.+++. ..+++|++|++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+.+
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence 99998752 678999999999999987778889999999999999998 66 454 68899999999999999975
Q ss_pred chhhhhcCCCCCCEEEccCCccCc
Q 044005 187 SIRAKIGNLMQLTELEMDNNKLFG 210 (248)
Q Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~ 210 (248)
++ .+..+++|++|++++|++.+
T Consensus 174 -~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 174 -YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -CT-TGGGCSSCCEEEECBC----
T ss_pred -hH-HhccCCCCCEEEeeCcccCC
Confidence 33 67889999999999999863
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=9.2e-18 Score=142.44 Aligned_cols=211 Identities=14% Similarity=0.088 Sum_probs=146.6
Q ss_pred CCCccceeeeCC----------CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc----
Q 044005 21 INATNFGIHCNS----------AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS---- 86 (248)
Q Consensus 21 ~~~~~~~~~c~~----------~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~---- 86 (248)
+.|.+..+.|.. ..++++|+|++|+++..-+.+|. .+++ |++|+|++|++ .+.++.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~-~l~~------L~~L~Ls~N~i---~~~i~~~~f~ 76 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS-GFGD------LEKIEISQNDV---LEVIEADVFS 76 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSST-TCTT------CCEEEEECCTT---CCEECTTSBC
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHc-CCCC------CCEEECcCCCC---CCccChhHhh
Confidence 337888888852 14799999999999854445778 8889 99999999998 443332
Q ss_pred ---------CCCCCcccccCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCC-CccCCCCchhhcCCC-Cc
Q 044005 87 ---------SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSK-NKFSSSMPNSLRKVK-PL 150 (248)
Q Consensus 87 ---------~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~-n~l~~~~~~~~~~l~-~L 150 (248)
.+..|.+....+..|..+++|++|++++|+++.. .....+..+++.+ +.+....+..+..+. .+
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 3445777777788899999999999999998776 2334567788755 455533334455554 58
Q ss_pred ceEEeeCCcCCCCCcccccCCCCCcEEEecC-cccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccC
Q 044005 151 LSLGFALNYLSGVIAPSIGSLSNLKGLYLYS-NRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQ 229 (248)
Q Consensus 151 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 229 (248)
+.|++++|.++ .++.......+|+.+++.+ |.+....+..+..+++|++|++++|+++ .+|.. .+.+|+.|...+
T Consensus 157 ~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~ 232 (350)
T 4ay9_X 157 VILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARS 232 (350)
T ss_dssp EEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTT
T ss_pred hhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhcc
Confidence 88999999988 4555555667888898875 5565333356788889999999999988 44432 345666666665
Q ss_pred CCCCCCCCCCCCCCCCC
Q 044005 230 NHLNGNTYEHIPEPNFH 246 (248)
Q Consensus 230 n~~~~~~~~~i~~l~~l 246 (248)
+.--..+|. +..+..|
T Consensus 233 ~~~l~~lP~-l~~l~~L 248 (350)
T 4ay9_X 233 TYNLKKLPT-LEKLVAL 248 (350)
T ss_dssp CTTCCCCCC-TTTCCSC
T ss_pred CCCcCcCCC-chhCcCh
Confidence 543345553 4444444
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=1.3e-18 Score=148.31 Aligned_cols=200 Identities=18% Similarity=0.191 Sum_probs=149.2
Q ss_pred CC-cEEEEeeCCCccccccCcchhHHHHHHHhh-hceeEEEeccccccccCCC-----C----Cc----CCCCCcccccC
Q 044005 33 AK-RVISINLNTIGLKVRFTNSHSHQFLILHIL-IKASIYYLASYRLKLATPP-----I----SS----SLGNNRLSGVI 97 (248)
Q Consensus 33 ~~-~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l-~~L~~L~ls~n~~~~~~~~-----~----~~----~L~~~~~~~~~ 97 (248)
.+ +|++|++++|.+.+..+..++ .+ ++.. .+|++|++++|.++..... + +. ++++|.+++..
T Consensus 49 ~~~~L~~L~Ls~N~l~~~~~~~l~-~~--l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 49 TPASVTSLNLSGNSLGFKNSDELV-QI--LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp CCTTCCEEECCSSCGGGSCHHHHH-HH--HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCCceeEEECcCCCCCHHHHHHHH-HH--HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 44 799999999999887777777 44 2222 3499999999998432211 0 12 88899998765
Q ss_pred Cccc----cC-CCCCcEEEccCCccCCC---------CCCC-CccEEEcCCCccCCCCchhh----cCC-CCcceEEeeC
Q 044005 98 PPEI----GL-LTHLKHLHIDMNKLHGS---------ENLK-FLSTVDLSKNKFSSSMPNSL----RKV-KPLLSLGFAL 157 (248)
Q Consensus 98 ~~~~----~~-l~~L~~L~l~~n~l~~~---------~~~~-~L~~L~ls~n~l~~~~~~~~----~~l-~~L~~L~l~~ 157 (248)
+..+ .. .++|++|++++|.++.. ..++ .|++|++++|.++...+..+ ..+ ++|++|++++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 5544 34 36999999999999854 2344 89999999999986665444 445 5999999999
Q ss_pred CcCCCC----CcccccC-CCCCcEEEecCcccCcchh----hhhcCCCCCCEEEccCCccCc-------cccccccCCCC
Q 044005 158 NYLSGV----IAPSIGS-LSNLKGLYLYSNRLSRSIR----AKIGNLMQLTELEMDNNKLFG-------QIPKSLRNFTS 221 (248)
Q Consensus 158 n~l~~~----~~~~~~~-l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~-------~~~~~l~~l~~ 221 (248)
|.+... ++..+.. .++|++|++++|.+....+ ..+..+++|++|++++|.+.+ .++..+..+++
T Consensus 206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 999853 3445555 4699999999999976433 445678999999999998543 23445778899
Q ss_pred CcEEeccCCCCCCC
Q 044005 222 LNRVHLEQNHLNGN 235 (248)
Q Consensus 222 L~~L~l~~n~~~~~ 235 (248)
|++|++++|.+.+.
T Consensus 286 L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 286 IILVDKNGKEIHPS 299 (362)
T ss_dssp EEEECTTSCBCCGG
T ss_pred eEEEecCCCcCCCc
Confidence 99999999999755
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=5.7e-20 Score=161.02 Aligned_cols=149 Identities=19% Similarity=0.157 Sum_probs=82.3
Q ss_pred CCCCCccccc----CCccccCCCCCcEEEccCCccCCC----------CCCCCccEEEcCCCccCCC----CchhhcCCC
Q 044005 87 SLGNNRLSGV----IPPEIGLLTHLKHLHIDMNKLHGS----------ENLKFLSTVDLSKNKFSSS----MPNSLRKVK 148 (248)
Q Consensus 87 ~L~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~L~~L~ls~n~l~~~----~~~~~~~l~ 148 (248)
++++|.++.. ++..+..+++|++|++++|.++.. ..++.|++|++++|.++.. ++..+..++
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 5555655542 344555566666666666665432 2355666666666665532 344444455
Q ss_pred CcceEEeeCCcCC-----------------------------CC----CcccccCCCCCcEEEecCcccCcchhhhhcC-
Q 044005 149 PLLSLGFALNYLS-----------------------------GV----IAPSIGSLSNLKGLYLYSNRLSRSIRAKIGN- 194 (248)
Q Consensus 149 ~L~~L~l~~n~l~-----------------------------~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~- 194 (248)
+|++|++++|.+. .. ++..+..+++|++|++++|.+.+..+..+..
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 5555555555543 21 1233334466666666666664433332221
Q ss_pred ----CCCCCEEEccCCccCc----cccccccCCCCCcEEeccCCCCCCC
Q 044005 195 ----LMQLTELEMDNNKLFG----QIPKSLRNFTSLNRVHLEQNHLNGN 235 (248)
Q Consensus 195 ----l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~ 235 (248)
.++|++|++++|.+++ .++..+..+++|++|++++|.+++.
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 4566777777776664 4555566667777777777776543
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1.4e-20 Score=169.32 Aligned_cols=189 Identities=15% Similarity=0.126 Sum_probs=144.9
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEE-
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLH- 111 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~- 111 (248)
.++|+.|+|++|.+. .+|..++ .++. |+.|++++|.. ....+..+..+...+..|..+..+++|+.|+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~-~l~~------L~~L~l~~n~~---l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELE-SCKE------LQELEPENKWC---LLTIILLMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHH-HHHH------HHHHCTTCHHH---HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred CccceeccCChhhHH-hhHHHHH-HHHH------HHHhccccchh---hhhHHHHHHhcccccCCHHHHHHHHhcccCcc
Confidence 457788999999986 7898998 8999 77778866641 1111111111122345566777888888887
Q ss_pred ccCCccCCC------------CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEe
Q 044005 112 IDMNKLHGS------------ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYL 179 (248)
Q Consensus 112 l~~n~l~~~------------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (248)
++.|.+..+ -....|++|++++|.++ .+|. ++.+++|+.|++++|.++ .+|..++.+++|++|++
T Consensus 417 l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQA 493 (567)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred hhhcccchhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEEC
Confidence 555544332 01235899999999998 4776 889999999999999999 77889999999999999
Q ss_pred cCcccCcchhhhhcCCCCCCEEEccCCccCccc-cccccCCCCCcEEeccCCCCCCCCC
Q 044005 180 YSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQI-PKSLRNFTSLNRVHLEQNHLNGNTY 237 (248)
Q Consensus 180 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~ 237 (248)
++|.+++ +| .+..+++|++|++++|.+++.. |..+..+++|+.|++++|.+++..|
T Consensus 494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999976 56 7889999999999999999765 8889999999999999999985544
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.1e-16 Score=127.15 Aligned_cols=140 Identities=16% Similarity=0.201 Sum_probs=123.2
Q ss_pred cEEEccCCccCCC--CCCCCccEEEcCCCccCCCCc-hhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCccc
Q 044005 108 KHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMP-NSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRL 184 (248)
Q Consensus 108 ~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 184 (248)
++++++++.++.+ .....+++|++++|.++...+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 5889999988877 234568999999999985544 4578999999999999999977777899999999999999999
Q ss_pred CcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 185 SRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..++.+..|+
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 887778899999999999999999987788899999999999999999988789998887765
No 105
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.9e-18 Score=159.77 Aligned_cols=209 Identities=17% Similarity=0.122 Sum_probs=114.0
Q ss_pred cccCCcccCCCC-CccceeeeCCCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCC
Q 044005 11 LLLSLWNLYPIN-ATNFGIHCNSAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLG 89 (248)
Q Consensus 11 ~~~~~w~~~~~~-~~~~~~~c~~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~ 89 (248)
..-++|...... ..|.++.+. .++++.|+|.++.+.. .+..+ ++.++|+.+.+ .+. ++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~-~~~~~------------l~~l~Ls~~~i---~~~---~~~ 209 (727)
T 4b8c_D 150 AKKQQPTGDSTPSGTATNSAVS-TPLTPKIELFANGKDE-ANQAL------------LQHKKLSQYSI---DED---DDI 209 (727)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred cccCCCcCCCCccccCCCceec-CCccceEEeeCCCCCc-chhhH------------hhcCccCcccc---cCc---ccc
Confidence 334456543444 677777765 3679999999998875 23222 34444555444 111 112
Q ss_pred CCcccccCCccccCCCCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCc
Q 044005 90 NNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIA 165 (248)
Q Consensus 90 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 165 (248)
.|.+. ..+..+..+++|+.|++++|.+..+ ..++.|++|++++|.++ .+|..+..+++|++|++++|.++ .+|
T Consensus 210 ~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 210 ENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp -------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred cccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence 23333 4567788899999999999998766 46788999999999998 88888999999999999999998 678
Q ss_pred ccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCC-CCcEEeccCCCCCCCCCCCCCCC
Q 044005 166 PSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFT-SLNRVHLEQNHLNGNTYEHIPEP 243 (248)
Q Consensus 166 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~i~~l 243 (248)
..+..+.+|++|++++|.+. .+|..+..+++|++|+|++|.+++.+|..+..+. .+..+++++|.+++.+|..+..+
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l 364 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFI 364 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred hhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccccee
Confidence 88999999999999999996 6777789999999999999999987777665432 22346778888888877766554
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=1.3e-16 Score=126.77 Aligned_cols=140 Identities=17% Similarity=0.221 Sum_probs=122.5
Q ss_pred cEEEccCCccCCC--CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccC
Q 044005 108 KHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLS 185 (248)
Q Consensus 108 ~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 185 (248)
+.++++++.++.+ .-.+.+++|++++|.++...+..+..+++|++|++++|.+....|..+..+++|++|++++|.+.
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 5788888888877 23467999999999998555568899999999999999999877889999999999999999998
Q ss_pred cchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 186 RSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..++.+..++
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence 66556678899999999999999987788899999999999999999977777788777664
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=2.1e-16 Score=143.34 Aligned_cols=66 Identities=26% Similarity=0.271 Sum_probs=34.1
Q ss_pred CCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCC
Q 044005 172 SNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFH 246 (248)
Q Consensus 172 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l 246 (248)
++|++|++++|.+++ +| ..+++|++|++++|.++ .+|. .+++|+.|++++|.++ .+|..++.+..|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE 286 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence 445555555555543 22 23345555555555555 3333 3455666666666665 555555554444
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.2e-16 Score=144.69 Aligned_cols=147 Identities=21% Similarity=0.284 Sum_probs=126.0
Q ss_pred CCCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEE
Q 044005 32 SAKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLH 111 (248)
Q Consensus 32 ~~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~ 111 (248)
.+++|+.|+|++|.+.+..+ +. .++. |+.|+|++|.+ . .++.+..+++|++|+
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~-~l~~------L~~L~Ls~N~l---~---------------~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LT-NLKN------LGWLFLDENKI---K---------------DLSSLKDLKKLKSLS 115 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GG-GCTT------CCEEECCSSCC---C---------------CCTTSTTCTTCCEEE
T ss_pred cCCCCCEEEeeCCCCCCChh--hc-cCCC------CCEEECcCCCC---C---------------CChhhccCCCCCEEE
Confidence 35689999999999986443 66 7777 99999999998 1 134688999999999
Q ss_pred ccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcch
Q 044005 112 IDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSI 188 (248)
Q Consensus 112 l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 188 (248)
+++|.+..+ ..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.+.
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l- 190 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 190 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-
Confidence 999999877 678899999999999984 4 678899999999999999996544 88999999999999999764
Q ss_pred hhhhcCCCCCCEEEccCCccCcc
Q 044005 189 RAKIGNLMQLTELEMDNNKLFGQ 211 (248)
Q Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~ 211 (248)
..+..+++|+.|+|++|.+.+.
T Consensus 191 -~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 -RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GGGTTCTTCSEEECCSEEEECC
T ss_pred -hHHccCCCCCEEEccCCcCcCC
Confidence 3588899999999999999864
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=7e-19 Score=154.06 Aligned_cols=148 Identities=20% Similarity=0.130 Sum_probs=109.1
Q ss_pred CCCCCccccc----CCccccCCCCCcEEEccCCccCCC----------CCCCCccEEEcCCCccCCC----CchhhcCCC
Q 044005 87 SLGNNRLSGV----IPPEIGLLTHLKHLHIDMNKLHGS----------ENLKFLSTVDLSKNKFSSS----MPNSLRKVK 148 (248)
Q Consensus 87 ~L~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~L~~L~ls~n~l~~~----~~~~~~~l~ 148 (248)
++++|.++.. ++..+..+++|++|++++|.++.. ...+.|++|++++|.++.. ++..+..++
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 6666766643 455566678888888888877533 2346899999999988754 455667789
Q ss_pred CcceEEeeCCcCCCCCcccccC-----CCCCcEEEecCcccCc----chhhhhcCCCCCCEEEccCCccCcccccc----
Q 044005 149 PLLSLGFALNYLSGVIAPSIGS-----LSNLKGLYLYSNRLSR----SIRAKIGNLMQLTELEMDNNKLFGQIPKS---- 215 (248)
Q Consensus 149 ~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---- 215 (248)
+|++|++++|.+....+..+.. .++|++|++++|.+++ .++..+..+++|++|++++|.+++.....
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~ 421 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHH
Confidence 9999999999987544443332 6799999999999975 67788888999999999999998642222
Q ss_pred cc-CCCCCcEEeccCCCCCC
Q 044005 216 LR-NFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 216 l~-~l~~L~~L~l~~n~~~~ 234 (248)
+. ...+|+.|.+..+.+..
T Consensus 422 l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 422 VRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HTSTTCCCCEEECTTCCCCH
T ss_pred hccCCcchhheeecccccCH
Confidence 22 23468888888776653
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=2.1e-16 Score=143.45 Aligned_cols=121 Identities=27% Similarity=0.280 Sum_probs=89.4
Q ss_pred CCCcEEEccCCccCCC-CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcc
Q 044005 105 THLKHLHIDMNKLHGS-ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNR 183 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (248)
++|+.|++++|.++++ ..+++|++|++++|.++ .+|. .+++|++|++++|.+++ +| ..+++|+.|++++|.
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR 252 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC
T ss_pred CCCcEEECCCCCCCCCCCccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC
Confidence 4455555555555544 23345555555555555 3332 23778999999998885 44 456899999999999
Q ss_pred cCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCC
Q 044005 184 LSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYE 238 (248)
Q Consensus 184 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 238 (248)
++. +|. .+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..|.
T Consensus 253 L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 253 LTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 974 554 5788999999999999 7888899999999999999999866554
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=6.3e-17 Score=137.86 Aligned_cols=150 Identities=21% Similarity=0.221 Sum_probs=124.1
Q ss_pred eEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCccCCC-----C-CCCCccEEEcCCCccCCCCc
Q 044005 68 SIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----E-NLKFLSTVDLSKNKFSSSMP 141 (248)
Q Consensus 68 ~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~-~~~~L~~L~ls~n~l~~~~~ 141 (248)
++++++++.+ ..+|..+. +.++.|++++|.++++ . .+++|++|++++|.++...+
T Consensus 21 ~~l~c~~~~l-----------------~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~ 81 (361)
T 2xot_A 21 NILSCSKQQL-----------------PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81 (361)
T ss_dssp TEEECCSSCC-----------------SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT
T ss_pred CEEEeCCCCc-----------------CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh
Confidence 5678887777 23454332 4589999999999766 3 78899999999999996666
Q ss_pred hhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccc---cC
Q 044005 142 NSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSL---RN 218 (248)
Q Consensus 142 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~ 218 (248)
..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+|++|.+++..+..+ ..
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence 779999999999999999997666778899999999999999987778889999999999999999995433444 56
Q ss_pred CCCCcEEeccCCCCCCCC
Q 044005 219 FTSLNRVHLEQNHLNGNT 236 (248)
Q Consensus 219 l~~L~~L~l~~n~~~~~~ 236 (248)
+++|+.|++++|.+++..
T Consensus 162 l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CTTCCEEECCSSCCCCCC
T ss_pred CCcCCEEECCCCCCCccC
Confidence 899999999999998543
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=2.7e-16 Score=122.30 Aligned_cols=106 Identities=24% Similarity=0.339 Sum_probs=77.4
Q ss_pred CCcEEEccCCccCCC------CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEe
Q 044005 106 HLKHLHIDMNKLHGS------ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYL 179 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (248)
+|++|++++|.++++ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 677777877777554 35667777777777777655667777777777777777777666666777777777777
Q ss_pred cCcccCcchhhhhcCCCCCCEEEccCCccCcc
Q 044005 180 YSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQ 211 (248)
Q Consensus 180 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (248)
++|++++..|..+..+++|++|++++|.++..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777766666777777777777777777643
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=3.7e-16 Score=118.68 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=70.4
Q ss_pred CCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcch-hhhhcCCCCCCEE
Q 044005 123 LKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSI-RAKIGNLMQLTEL 201 (248)
Q Consensus 123 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L 201 (248)
+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.. +..+..+++|++|
T Consensus 48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 34455555555555422 44556666777777777666545555555677777777777765432 2556667777777
Q ss_pred EccCCccCcccc---ccccCCCCCcEEeccCCCCCCCCCCC
Q 044005 202 EMDNNKLFGQIP---KSLRNFTSLNRVHLEQNHLNGNTYEH 239 (248)
Q Consensus 202 ~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~ 239 (248)
++++|.+++..+ ..+..+++|+.|++++|.+. ++|+.
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 777777774333 35667777777777777765 44443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=4.2e-16 Score=127.13 Aligned_cols=152 Identities=22% Similarity=0.252 Sum_probs=124.9
Q ss_pred eeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchh
Q 044005 67 ASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNS 143 (248)
Q Consensus 67 L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~ 143 (248)
++.++++++.+ + .++ .+..+++|++|++++|.++.+ ..+++|++|++++|.++ .++.
T Consensus 21 l~~l~l~~~~i----------------~-~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~- 80 (263)
T 1xeu_A 21 AVKQNLGKQSV----------------T-DLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP- 80 (263)
T ss_dssp HHHHHHTCSCT----------------T-SEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG-
T ss_pred HHHHHhcCCCc----------------c-ccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh-
Confidence 77778888777 1 222 577899999999999998776 56789999999999998 4554
Q ss_pred hcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCc
Q 044005 144 LRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLN 223 (248)
Q Consensus 144 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 223 (248)
+..+++|++|++++|.+++. +. +.. .+|++|++++|.+++. ..+..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 81 l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~ 153 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLE 153 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCC
T ss_pred hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCC
Confidence 88999999999999999853 33 233 8999999999999753 358889999999999999995 44 688999999
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCC
Q 044005 224 RVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 224 ~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
.|++++|.+++. ..++.+..|+
T Consensus 154 ~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 154 VLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp EEECTTSCCCBC--TTSTTCCCCC
T ss_pred EEECCCCcCcch--HHhccCCCCC
Confidence 999999999865 6666666554
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=6.3e-16 Score=117.38 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=112.9
Q ss_pred ceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCch
Q 044005 66 KASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPN 142 (248)
Q Consensus 66 ~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~ 142 (248)
+|++|++++|.+ .. +.+|..+..+++|++|++++|.+++. ..+++|++|++++|.+.+.+|.
T Consensus 25 ~L~~L~l~~n~l---~~------------~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 25 AVRELVLDNCKS---ND------------GKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp SCSEEECCSCBC---BT------------TBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCH
T ss_pred cCCEEECCCCCC---Ch------------hhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHH
Confidence 599999999988 20 24667788999999999999999765 6788999999999999966888
Q ss_pred hhcCCCCcceEEeeCCcCCCCC-cccccCCCCCcEEEecCcccCcchh---hhhcCCCCCCEEEccCCccCccccc
Q 044005 143 SLRKVKPLLSLGFALNYLSGVI-APSIGSLSNLKGLYLYSNRLSRSIR---AKIGNLMQLTELEMDNNKLFGQIPK 214 (248)
Q Consensus 143 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (248)
.+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .+|.
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 8888999999999999998542 2688899999999999999976544 47889999999999999887 4443
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=3.6e-16 Score=121.61 Aligned_cols=127 Identities=19% Similarity=0.252 Sum_probs=76.3
Q ss_pred cEEEccCCccCCC--CCCCCccEEEcCCCccCCCCch-hhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCccc
Q 044005 108 KHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMPN-SLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRL 184 (248)
Q Consensus 108 ~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 184 (248)
++++++++.++.+ .....+++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 4555555555544 1223566666666666533332 256666666666666666655555666666666666666666
Q ss_pred CcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCC
Q 044005 185 SRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 234 (248)
.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 65555555666666666666666665556666666666666666666654
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=1.9e-15 Score=135.68 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=128.1
Q ss_pred ceeEEEeccccccccCCCCCc-----CCCCCcccccCCccccCCCCCcEEEccCCccCCCCCCC-CccEEEcCCCccCCC
Q 044005 66 KASIYYLASYRLKLATPPISS-----SLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGSENLK-FLSTVDLSKNKFSSS 139 (248)
Q Consensus 66 ~L~~L~ls~n~~~~~~~~~~~-----~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~L~~L~ls~n~l~~~ 139 (248)
+++.|++++|.++++...++. ++++|.++ .+| ..+++|++|++++|.++++..+. +|++|++++|.+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~- 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM- 134 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCC-
Confidence 699999999999443332222 88899998 566 55789999999999998874344 79999999999984
Q ss_pred CchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCC
Q 044005 140 MPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNF 219 (248)
Q Consensus 140 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 219 (248)
+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|++|++++|.++ .+|. +..
T Consensus 135 lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~- 200 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV- 200 (571)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC--
T ss_pred CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-
Confidence 666 68899999999999985 554 57899999999999976 555 54 89999999999999 6666 544
Q ss_pred CCC-------cEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 220 TSL-------NRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 220 ~~L-------~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
+| +.|++++|.++ .+|..+..+..|+
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC 233 (571)
T ss_dssp --------CCEEEECCSSCCC-CCCGGGGGSCTTE
T ss_pred -hhhcccccceEEecCCCcce-ecCHHHhcCCCCC
Confidence 67 99999999998 6888777766553
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=2.2e-15 Score=117.30 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=52.6
Q ss_pred CccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEcc
Q 044005 125 FLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMD 204 (248)
Q Consensus 125 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 204 (248)
.+++|++++|.++ .+|..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4455555555544 344444555555555555555554434444455555555555555544444444455555555555
Q ss_pred CCccCccccccccCCCCCcEEeccCCCC
Q 044005 205 NNKLFGQIPKSLRNFTSLNRVHLEQNHL 232 (248)
Q Consensus 205 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 232 (248)
+|.++...+..+..+++|+.|++++|.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 5555533333344455555555555544
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=2.1e-15 Score=115.51 Aligned_cols=105 Identities=24% Similarity=0.268 Sum_probs=50.9
Q ss_pred CCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEe
Q 044005 105 THLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYL 179 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (248)
++|++|++++|.++++ ..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 3455555555555433 23445555555555554222233445555555555555555433333444555555555
Q ss_pred cCcccCcchhhhhcCCCCCCEEEccCCccC
Q 044005 180 YSNRLSRSIRAKIGNLMQLTELEMDNNKLF 209 (248)
Q Consensus 180 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (248)
++|.+.+..+..+..+++|++|++++|.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 555554333333444555555555555544
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.8e-15 Score=112.56 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=57.5
Q ss_pred CccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcc-hhhhhcCCCCCCEEEc
Q 044005 125 FLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRS-IRAKIGNLMQLTELEM 203 (248)
Q Consensus 125 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L 203 (248)
+|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+. .+..+..+++|++|++
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 344444444444322 3445555666666666666544555555566666666666666542 2355666666777777
Q ss_pred cCCccCcccc---ccccCCCCCcEEecc
Q 044005 204 DNNKLFGQIP---KSLRNFTSLNRVHLE 228 (248)
Q Consensus 204 ~~n~l~~~~~---~~l~~l~~L~~L~l~ 228 (248)
++|.+++..+ ..+..+++|+.|+++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7776664333 346666777777664
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.6e-15 Score=112.84 Aligned_cols=125 Identities=22% Similarity=0.185 Sum_probs=91.1
Q ss_pred hceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCc
Q 044005 65 IKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMP 141 (248)
Q Consensus 65 ~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~ 141 (248)
.+|++|++++|.+ .. +.+|..+..+++|++|++++|.+++. ..+++|++|++++|.+++.+|
T Consensus 17 ~~l~~L~l~~n~l---~~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 17 SDVKELVLDNSRS---NE------------GKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGCSEEECTTCBC---BT------------TBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTH
T ss_pred ccCeEEEccCCcC---Ch------------hHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHH
Confidence 3677777777777 20 24566677788888888888877665 566778888888888875577
Q ss_pred hhhcCCCCcceEEeeCCcCCCC-CcccccCCCCCcEEEecCcccCcchh---hhhcCCCCCCEEEcc
Q 044005 142 NSLRKVKPLLSLGFALNYLSGV-IAPSIGSLSNLKGLYLYSNRLSRSIR---AKIGNLMQLTELEMD 204 (248)
Q Consensus 142 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~ 204 (248)
..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777788888888888888753 23667778888888888888865544 467777888888765
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=4e-16 Score=140.36 Aligned_cols=119 Identities=24% Similarity=0.332 Sum_probs=103.3
Q ss_pred CCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCc
Q 044005 106 HLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSN 182 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 182 (248)
.|++|++++|.++++ ..+++|++|++++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 488999999998876 56778999999999999 889999999999999999999996 56 8899999999999999
Q ss_pred ccCcch-hhhhcCCCCCCEEEccCCccCcccccc---ccCCCCCcEEec
Q 044005 183 RLSRSI-RAKIGNLMQLTELEMDNNKLFGQIPKS---LRNFTSLNRVHL 227 (248)
Q Consensus 183 ~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~l 227 (248)
.+++.. |..+..+++|++|++++|.+++..+.. +..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 998765 889999999999999999999654322 334789998864
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=3.5e-15 Score=126.47 Aligned_cols=183 Identities=14% Similarity=0.064 Sum_probs=107.4
Q ss_pred EEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCc
Q 044005 37 ISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNK 116 (248)
Q Consensus 37 ~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 116 (248)
++++.++++++ .+|..+. ++ +++|+|++|+++.+. +.+|.++++|++|++++|.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~------l~~L~Ls~N~i~~i~----------------~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RN------AIELRFVLTKLRVIQ----------------KGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TT------CSEEEEESCCCSEEC----------------TTSSTTCTTCCEEEEECCT
T ss_pred CEEEecCCCCC-ccCcCcC---CC------CCEEEccCCcCCCcC----------------HHHHcCCCCCCEEECcCCC
Confidence 46788888887 6777665 46 999999999993221 2344555555555555555
Q ss_pred cCCC------CCCCCccE-EEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCC-------------------------C
Q 044005 117 LHGS------ENLKFLST-VDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGV-------------------------I 164 (248)
Q Consensus 117 l~~~------~~~~~L~~-L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------~ 164 (248)
+.+. ..++++++ +.+..|.+....+..+..+++|++|++++|.+... .
T Consensus 66 i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 66 VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred CCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 4221 23333332 23333444433333444445555555555444322 2
Q ss_pred cccccCC-CCCcEEEecCcccCcchhhhhcCCCCCCEEEccC-CccCccccccccCCCCCcEEeccCCCCCCCCCCCCCC
Q 044005 165 APSIGSL-SNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDN-NKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPE 242 (248)
Q Consensus 165 ~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~ 242 (248)
+..+..+ ..++.|++++|.|.. ++.......+|+++++.+ |.++...+..+..+++|+.|++++|.++.-.+..+..
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~ 224 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred ccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence 2223333 357778888888864 444444456788888875 5666333356788999999999999998444445666
Q ss_pred CCCC
Q 044005 243 PNFH 246 (248)
Q Consensus 243 l~~l 246 (248)
+..|
T Consensus 225 L~~L 228 (350)
T 4ay9_X 225 LKKL 228 (350)
T ss_dssp CCEE
T ss_pred chHh
Confidence 5544
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=1.9e-16 Score=146.39 Aligned_cols=155 Identities=20% Similarity=0.176 Sum_probs=107.2
Q ss_pred CcEEEEeeCCCcccccc---------CcchhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCC
Q 044005 34 KRVISINLNTIGLKVRF---------TNSHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLL 104 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~---------~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l 104 (248)
..++.++|+.+.+.+.. +..+. .++. |+.|+|++|.+ ..+|..+..+
T Consensus 191 ~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~-~l~~------L~~L~Ls~n~l-----------------~~l~~~~~~l 246 (727)
T 4b8c_D 191 ALLQHKKLSQYSIDEDDDIENRMVMPKDSKY-DDQL------WHALDLSNLQI-----------------FNISANIFKY 246 (727)
T ss_dssp --------------------------------CCCC------CCEEECTTSCC-----------------SCCCGGGGGC
T ss_pred hHhhcCccCcccccCccccccceecChhhhc-cCCC------CcEEECCCCCC-----------------CCCChhhcCC
Confidence 35666777776665322 33344 4555 99999999998 2466677789
Q ss_pred CCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEec
Q 044005 105 THLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLY 180 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 180 (248)
++|++|++++|.++.+ ..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|+++
T Consensus 247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 9999999999999866 57889999999999999 78989999999999999999998 678889999999999999
Q ss_pred CcccCcchhhhhcCCC-CCCEEEccCCccCccccc
Q 044005 181 SNRLSRSIRAKIGNLM-QLTELEMDNNKLFGQIPK 214 (248)
Q Consensus 181 ~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~ 214 (248)
+|.+.+.+|..+..+. .+..+++++|.+++.+|.
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 9999887776654321 112345666666655544
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=4.6e-15 Score=113.60 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=89.7
Q ss_pred cccCCCCCcEEEccCCccCCC---CC-CCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCc
Q 044005 100 EIGLLTHLKHLHIDMNKLHGS---EN-LKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLK 175 (248)
Q Consensus 100 ~~~~l~~L~~L~l~~n~l~~~---~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 175 (248)
.+..+++|++|++++|.++.+ .. .++|++|++++|.+++ + ..+..+++|++|++++|.++...+..+..+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 345667777777777777655 22 2377788888877763 3 4667777888888888887744333346777888
Q ss_pred EEEecCcccCcchhh--hhcCCCCCCEEEccCCccCcccccc----ccCCCCCcEEeccCCCC
Q 044005 176 GLYLYSNRLSRSIRA--KIGNLMQLTELEMDNNKLFGQIPKS----LRNFTSLNRVHLEQNHL 232 (248)
Q Consensus 176 ~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~~ 232 (248)
+|++++|.+. .+|. .+..+++|++|++++|.++ .++.. +..+++|+.|+++.|..
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8888888774 3444 6677778888888888877 44543 67778888888877765
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=8.3e-17 Score=125.69 Aligned_cols=163 Identities=18% Similarity=0.259 Sum_probs=130.6
Q ss_pred HHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCccCCC---CCCCCccEEEcCC
Q 044005 57 QFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS---ENLKFLSTVDLSK 133 (248)
Q Consensus 57 ~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~ 133 (248)
.++.+.....++.++++.+.+ .+..| .++ .+|..+..+++|++|++++|.++++ ..+++|++|++++
T Consensus 10 ~~~~~~~~~~l~~l~l~~~~l---~~~~~------~l~-~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~ 79 (198)
T 1ds9_A 10 AIRIFEERKSVVATEAEKVEL---HGMIP------PIE-KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGR 79 (198)
T ss_dssp HHHHHHHTTCCCCTTCSEEEC---CBCCT------TCC-CCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEE
T ss_pred HHHHHHhcccccCcchheeEe---ccccC------cHh-hhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCC
Confidence 455666666788888888888 44332 111 3455889999999999999999877 4567899999999
Q ss_pred CccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchh-hhhcCCCCCCEEEccCCccCccc
Q 044005 134 NKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIR-AKIGNLMQLTELEMDNNKLFGQI 212 (248)
Q Consensus 134 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 212 (248)
|.+. .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+++..
T Consensus 80 n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 80 NLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp EEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred CCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 9998 788878888999999999999985 44 67888999999999999975333 47889999999999999998655
Q ss_pred cc----------cccCCCCCcEEeccCCCCCC
Q 044005 213 PK----------SLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 213 ~~----------~l~~l~~L~~L~l~~n~~~~ 234 (248)
|. .+..+++|+.|+ ++.++.
T Consensus 157 ~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 157 KENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 44 277899999987 676653
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.2e-14 Score=110.67 Aligned_cols=105 Identities=27% Similarity=0.363 Sum_probs=78.8
Q ss_pred CCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEec
Q 044005 105 THLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLY 180 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 180 (248)
++|++|++++|.++.+ ..+++|++|++++|.++...+..|..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4677888888877655 456778888888888875555667778888888888888876666677778888888888
Q ss_pred CcccCcchhhhhcCCCCCCEEEccCCccC
Q 044005 181 SNRLSRSIRAKIGNLMQLTELEMDNNKLF 209 (248)
Q Consensus 181 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (248)
+|.+....+..+..+++|++|++++|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88886555556777788888888888765
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=6e-14 Score=107.33 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=103.9
Q ss_pred CcEEEccCCccCCC--CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCccc
Q 044005 107 LKHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRL 184 (248)
Q Consensus 107 L~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 184 (248)
.+.++++++.++.+ ...+.|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 46777888877766 3456799999999998855555678889999999999999866556678889999999999999
Q ss_pred CcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCC
Q 044005 185 SRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNT 236 (248)
Q Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 236 (248)
++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 8666666788889999999999998655555678899999999999887654
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=2e-16 Score=123.48 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=119.5
Q ss_pred CCcEEEEeeCCCccccccCc------chhHHHHHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCC
Q 044005 33 AKRVISINLNTIGLKVRFTN------SHSHQFLILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTH 106 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~------~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~ 106 (248)
..+++.++++.+.+.+..|. .+. .++. |++|++++|.+ ..+| .+..+++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~------L~~L~ls~n~l-----------------~~l~-~~~~l~~ 71 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLS-TLKA------CKHLALSTNNI-----------------EKIS-SLSGMEN 71 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTT------CSEEECSEEEE-----------------SCCC-CHHHHTT
T ss_pred cccccCcchheeEeccccCcHhhhhHHHh-cCCC------CCEEECCCCCC-----------------cccc-ccccCCC
Confidence 34677788888888777665 566 6666 99999999998 2345 7888999
Q ss_pred CcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCc-ccccCCCCCcEEEecC
Q 044005 107 LKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIA-PSIGSLSNLKGLYLYS 181 (248)
Q Consensus 107 L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~ 181 (248)
|++|++++|.++.+ ..+++|++|++++|.+++ +| .+..+++|++|++++|.+....+ ..+..+++|++|++++
T Consensus 72 L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp CCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred CCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 99999999999877 334789999999999984 55 68889999999999999985332 4788999999999999
Q ss_pred cccCcchhh----------hhcCCCCCCEEEccCCccCc
Q 044005 182 NRLSRSIRA----------KIGNLMQLTELEMDNNKLFG 210 (248)
Q Consensus 182 n~i~~~~~~----------~~~~l~~L~~L~L~~n~l~~ 210 (248)
|.+.+..|. .+..+++|++|+ ++.++.
T Consensus 150 N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999665443 377899999986 676663
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=7.3e-14 Score=106.82 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=101.4
Q ss_pred eeEEEeccccccccCCCCCcCCCCCcccccCCccccCC-CCCcEEEccCCccCCC---CCCCCccEEEcCCCccCCCCch
Q 044005 67 ASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLL-THLKHLHIDMNKLHGS---ENLKFLSTVDLSKNKFSSSMPN 142 (248)
Q Consensus 67 L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~---~~~~~L~~L~ls~n~l~~~~~~ 142 (248)
|++|++++|.+ . .++. +..+ ++|++|++++|.++++ ..++.|++|++++|.+++..+.
T Consensus 21 L~~L~l~~n~l---~--------------~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 21 DRELDLRGYKI---P--------------VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp CEEEECTTSCC---C--------------SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSC
T ss_pred ceEEEeeCCCC---c--------------hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcc
Confidence 99999999998 1 2333 4444 4999999999998765 6788999999999999844334
Q ss_pred hhcCCCCcceEEeeCCcCCCCCcc--cccCCCCCcEEEecCcccCcchhh----hhcCCCCCCEEEccCCccCc
Q 044005 143 SLRKVKPLLSLGFALNYLSGVIAP--SIGSLSNLKGLYLYSNRLSRSIRA----KIGNLMQLTELEMDNNKLFG 210 (248)
Q Consensus 143 ~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~ 210 (248)
.+..+++|++|++++|.+. .+|. .+..+++|++|++++|.+.. .|. .+..+++|++|++++|....
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 4588999999999999997 4554 78889999999999999964 454 37889999999999998763
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=2.2e-13 Score=103.69 Aligned_cols=105 Identities=21% Similarity=0.166 Sum_probs=82.3
Q ss_pred CCcEEEccCCccCCC--CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcc
Q 044005 106 HLKHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNR 183 (248)
Q Consensus 106 ~L~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (248)
..++++++++.++.+ ...+.+++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 356788888888777 234678888888888886667778888888888888888886555566788888888888888
Q ss_pred cCcchhhhhcCCCCCCEEEccCCccCc
Q 044005 184 LSRSIRAKIGNLMQLTELEMDNNKLFG 210 (248)
Q Consensus 184 i~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (248)
+.+..+..+..+++|++|++++|.++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 876555667788888888888888764
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=3.5e-13 Score=113.12 Aligned_cols=99 Identities=14% Similarity=0.051 Sum_probs=83.2
Q ss_pred CCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCC-EEEccCCccCccccccccCCCCCcEE
Q 044005 147 VKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLT-ELEMDNNKLFGQIPKSLRNFTSLNRV 225 (248)
Q Consensus 147 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L 225 (248)
+++|+.+++.+|.+....+..|..+.+|+.+++..| +.......|..+.+|+ .+.+.+ .++...+.+|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999998888666677888999999999998 6655567788999999 999988 6765566889999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCC
Q 044005 226 HLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 226 ~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
++++|.++.-.+..|.++..|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCC
T ss_pred EeCCCccCccchhhhcCCcchh
Confidence 9999999866666888888776
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=5.9e-13 Score=101.76 Aligned_cols=104 Identities=21% Similarity=0.173 Sum_probs=82.8
Q ss_pred CcEEEccCCccCCC--CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCccc
Q 044005 107 LKHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRL 184 (248)
Q Consensus 107 L~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 184 (248)
-+.++++++.++.+ ...+.|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 36788888888777 2346788999999988866677788888999999999988865555567888899999999988
Q ss_pred CcchhhhhcCCCCCCEEEccCCccCc
Q 044005 185 SRSIRAKIGNLMQLTELEMDNNKLFG 210 (248)
Q Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (248)
.+..+..+..+++|++|++++|.+..
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ceeCHHHhccccCCCEEEeCCCCccc
Confidence 76555567888888999999888873
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1.2e-12 Score=99.53 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=59.8
Q ss_pred CCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEe
Q 044005 105 THLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYL 179 (248)
Q Consensus 105 ~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (248)
++|++|++++|.++++ ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 6777888888877665 45677888888888877444445677788888888888887555556777788888888
Q ss_pred cCcccC
Q 044005 180 YSNRLS 185 (248)
Q Consensus 180 ~~n~i~ 185 (248)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 888774
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.38 E-value=7.4e-14 Score=125.78 Aligned_cols=187 Identities=10% Similarity=-0.035 Sum_probs=100.5
Q ss_pred CCcEEEEeeCCCccccccCcchhHHH--HHHHhhhceeEEEeccccccccCC------CCCc----CCCCCccccc----
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQF--LILHILIKASIYYLASYRLKLATP------PISS----SLGNNRLSGV---- 96 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l--~~L~~l~~L~~L~ls~n~~~~~~~------~~~~----~L~~~~~~~~---- 96 (248)
.++|++|+|+++.+.+..+..++ .. . +|++|++++|......+ ..+. ++++|.+.+.
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~-~~~~~------~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLA-KARAD------DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHH-HHHGG------GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred CCCCCeEEeeccEecHHHHHHHH-Hhccc------cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 34677777777766655444444 22 2 26677776654100000 0011 4444544433
Q ss_pred CCccccCCCCCcEEEccCCccCCC---------CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCC---CCC
Q 044005 97 IPPEIGLLTHLKHLHIDMNKLHGS---------ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS---GVI 164 (248)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~ 164 (248)
++..+..+++|++|++++|.+++. ..+++|++|++++|.+. .++..+..+++|++|+++..... ...
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHH
Confidence 122234455666666666665522 34556666666666655 34555556666666666542221 122
Q ss_pred cccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCcccc-ccccCCCCCcEEecc
Q 044005 165 APSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIP-KSLRNFTSLNRVHLE 228 (248)
Q Consensus 165 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~ 228 (248)
+..+..+++|+.+++.++.. ..++..+..+++|++|++++|.+++... ..+..+++|++|+++
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 23445556666666666433 3455566667777777777777654332 335667777777777
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=3.7e-12 Score=97.29 Aligned_cols=100 Identities=22% Similarity=0.345 Sum_probs=75.5
Q ss_pred eeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCc
Q 044005 67 ASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMP 141 (248)
Q Consensus 67 L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~ 141 (248)
-+.+++++|++ ..+|..+. ++|++|++++|.++++ ..+++|++|++++|.+++..+
T Consensus 14 ~~~l~~~~n~l-----------------~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 74 (174)
T 2r9u_A 14 QTLVNCQNIRL-----------------ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74 (174)
T ss_dssp SSEEECCSSCC-----------------SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcEEEeCCCCC-----------------CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh
Confidence 36677777776 24455443 7788889998888766 567788899999888884444
Q ss_pred hhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccC
Q 044005 142 NSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLS 185 (248)
Q Consensus 142 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 185 (248)
..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 75 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 75 GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred hHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 45678888999999988888555555788888999999888875
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.38 E-value=1e-13 Score=124.86 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=29.9
Q ss_pred CCchhhcCCCCcceEEeeCCcCCCCCc-ccccCCCCCcEEEecCcccC-cchhhhhcCCCCCCEEEcc
Q 044005 139 SMPNSLRKVKPLLSLGFALNYLSGVIA-PSIGSLSNLKGLYLYSNRLS-RSIRAKIGNLMQLTELEMD 204 (248)
Q Consensus 139 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~ 204 (248)
.++..+..+++|++|++++|.+..... ..+..+++|++|++. +.+. ..++.....+++|++|++.
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 344445555666666666666442211 223445555555555 2221 1122223344455555555
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=2.9e-14 Score=121.85 Aligned_cols=162 Identities=16% Similarity=0.145 Sum_probs=95.2
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhh-hceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEEEc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHIL-IKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHLHI 112 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l-~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 112 (248)
..|++|++++|.++......++ .+ |..- .+|++|+|++|.+ +... +......+++|++|++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~-~~--L~~~~~~L~~L~Ls~n~l---~~~~------------~~~l~~~L~~L~~L~L 133 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVA-AV--LGSGRHALDEVNLASCQL---DPAG------------LRTLLPVFLRARKLGL 133 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHH-HH--HSSCSSCEEEEECTTCCC---CHHH------------HHHTHHHHHTEEEEEC
T ss_pred hhCCEEEecCCCCCHHHHHHHH-HH--HhhCCCCceEEEecCCCC---CHHH------------HHHHHHHHHhccHhhc
Confidence 3577778877777655444444 22 1111 2477777777776 2110 0111123456777777
Q ss_pred cCCccCCC----------CCCCCccEEEcCCCccCCC----CchhhcCCCCcceEEeeCCcCCCC----CcccccCCCCC
Q 044005 113 DMNKLHGS----------ENLKFLSTVDLSKNKFSSS----MPNSLRKVKPLLSLGFALNYLSGV----IAPSIGSLSNL 174 (248)
Q Consensus 113 ~~n~l~~~----------~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L 174 (248)
++|.++.. ...+.|++|++++|.++.. ++..+..+++|++|++++|.+... ++..+...++|
T Consensus 134 s~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 77777543 2356677777777776532 333445667777777777776532 23445556677
Q ss_pred cEEEecCcccCcc----hhhhhcCCCCCCEEEccCCccCcccc
Q 044005 175 KGLYLYSNRLSRS----IRAKIGNLMQLTELEMDNNKLFGQIP 213 (248)
Q Consensus 175 ~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (248)
++|++++|.|+.. ++..+...++|++|+|++|.+++...
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 7777777777542 33344456677777777777765433
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=1.2e-12 Score=109.78 Aligned_cols=103 Identities=15% Similarity=0.058 Sum_probs=88.0
Q ss_pred CCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCc-EEEecCcccCcchhhhhcCCCCCCEE
Q 044005 123 LKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLK-GLYLYSNRLSRSIRAKIGNLMQLTEL 201 (248)
Q Consensus 123 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~i~~~~~~~~~~l~~L~~L 201 (248)
+++|+++++++|.+.......|.++.+|+++++..| +....+..|..+.+|+ .+.+.. .+....+..|..+.+|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999988444457899999999999998 7656667889999999 999998 6765666789999999999
Q ss_pred EccCCccCccccccccCCCCCcEEec
Q 044005 202 EMDNNKLFGQIPKSLRNFTSLNRVHL 227 (248)
Q Consensus 202 ~L~~n~l~~~~~~~l~~l~~L~~L~l 227 (248)
++.+|.++......|..+++|+.|..
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999998666778999999999874
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=9.2e-14 Score=118.78 Aligned_cols=163 Identities=19% Similarity=0.231 Sum_probs=120.5
Q ss_pred ceeEEEeccccccccCCCCCcCCCCCcccccCCcccc-CCCCCcEEEccCCccCCC------CCCCCccEEEcCCCccCC
Q 044005 66 KASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIG-LLTHLKHLHIDMNKLHGS------ENLKFLSTVDLSKNKFSS 138 (248)
Q Consensus 66 ~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~------~~~~~L~~L~ls~n~l~~ 138 (248)
.|+.|++++|.+ +.... ..+...+. ..++|++|++++|.++.. ..+.+|++|++++|.++.
T Consensus 73 ~L~~L~Ls~n~l---~~~~~---------~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 73 SLRQLNLAGVRM---TPVKC---------TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp TCCEEECTTSCC---CHHHH---------HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred hCCEEEecCCCC---CHHHH---------HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH
Confidence 799999999998 22100 01222333 236899999999998654 345689999999999874
Q ss_pred CCchhh-----cCCCCcceEEeeCCcCCCC----CcccccCCCCCcEEEecCcccCcc----hhhhhcCCCCCCEEEccC
Q 044005 139 SMPNSL-----RKVKPLLSLGFALNYLSGV----IAPSIGSLSNLKGLYLYSNRLSRS----IRAKIGNLMQLTELEMDN 205 (248)
Q Consensus 139 ~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~ 205 (248)
.....+ ...++|++|++++|.++.. ++..+...++|++|++++|.+... ++..+...++|++|+|++
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 433333 2467899999999998642 344557789999999999999643 355667788999999999
Q ss_pred CccCcc----ccccccCCCCCcEEeccCCCCCCCCCCCC
Q 044005 206 NKLFGQ----IPKSLRNFTSLNRVHLEQNHLNGNTYEHI 240 (248)
Q Consensus 206 n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~i 240 (248)
|.+++. ++..+..+++|++|++++|.+++.....+
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 999863 34455677999999999999976554433
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.26 E-value=4.1e-13 Score=120.94 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=63.2
Q ss_pred CCcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccc-ccccc-----CCCCCc----CCCCCcccccCCccc-
Q 044005 33 AKRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASY-RLKLA-----TPPISS----SLGNNRLSGVIPPEI- 101 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n-~~~~~-----~~~~~~----~L~~~~~~~~~~~~~- 101 (248)
.++|++|+++++.+++..+..+...+++ |++|++++| .++.. ....+. ++++|.+++..+..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~------L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKN------FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTT------CCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCC------CcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 4478888888888776555555423445 888888777 33110 001111 666666554433333
Q ss_pred ---cCCCCCcEEEccCCc--cCCC------CCCCCccEEEcCCCc-cCCCCchhhcCCCCcceEEe
Q 044005 102 ---GLLTHLKHLHIDMNK--LHGS------ENLKFLSTVDLSKNK-FSSSMPNSLRKVKPLLSLGF 155 (248)
Q Consensus 102 ---~~l~~L~~L~l~~n~--l~~~------~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l 155 (248)
..+++|++|++++|. ++.. ..+++|++|++++|. +. .++..+..+++|++|++
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGT 242 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEEC
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEccc
Confidence 355677777777775 2111 335677777777662 22 23344444445555543
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=3e-11 Score=101.86 Aligned_cols=100 Identities=20% Similarity=0.159 Sum_probs=66.2
Q ss_pred EEEccCC-ccCCC---CCCCCccEEEcCC-CccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcc
Q 044005 109 HLHIDMN-KLHGS---ENLKFLSTVDLSK-NKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNR 183 (248)
Q Consensus 109 ~L~l~~n-~l~~~---~~~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (248)
.++++++ .++.+ ..+.+|++|++++ |.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|+|++|+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 3566665 55554 3445577777774 77764444567777777777777777776666667777777777777777
Q ss_pred cCcchhhhhcCCCCCCEEEccCCccC
Q 044005 184 LSRSIRAKIGNLMQLTELEMDNNKLF 209 (248)
Q Consensus 184 i~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (248)
+++..+..+..+. |++|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7654444444444 777777777765
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=1.8e-13 Score=123.21 Aligned_cols=193 Identities=11% Similarity=0.071 Sum_probs=115.7
Q ss_pred CcEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEecccccccc-----CCCCCc----CC---------CCCcccc
Q 044005 34 KRVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLA-----TPPISS----SL---------GNNRLSG 95 (248)
Q Consensus 34 ~~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~-----~~~~~~----~L---------~~~~~~~ 95 (248)
++|++|++++|.+.+.....+...+++ |++|++++| +... ....+. ++ ..+.+++
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~------L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPK------LQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTT------CCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCC------cCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 478888888888764332222113344 777777665 2100 000010 11 1222332
Q ss_pred cCCccc-cCCCCCcEEEccCCccCCC------CCCCCccEEEcC--C----CccCCC-----CchhhcCCCCcceEEeeC
Q 044005 96 VIPPEI-GLLTHLKHLHIDMNKLHGS------ENLKFLSTVDLS--K----NKFSSS-----MPNSLRKVKPLLSLGFAL 157 (248)
Q Consensus 96 ~~~~~~-~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~ls--~----n~l~~~-----~~~~~~~l~~L~~L~l~~ 157 (248)
.....+ ..+++|++|.+..+.++.. ..+++|++|+++ + +.++.. ++..+..+++|+.|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 211222 2367788887777777543 356788888888 3 344411 122355678888888866
Q ss_pred CcCCCCCcccccC-CCCCcEEEecCcccCcchhhhh-cCCCCCCEEEccCCccCccccc-cccCCCCCcEEeccCCCCCC
Q 044005 158 NYLSGVIAPSIGS-LSNLKGLYLYSNRLSRSIRAKI-GNLMQLTELEMDNNKLFGQIPK-SLRNFTSLNRVHLEQNHLNG 234 (248)
Q Consensus 158 n~l~~~~~~~~~~-l~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~ 234 (248)
.++...+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... .+..+++|+.|++++|.++.
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 555444444444 7889999999988866544444 6688899999999988654433 34558889999999888753
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=2e-10 Score=96.82 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=72.6
Q ss_pred cCCccccCCCCCcEEEccC-CccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCccccc
Q 044005 96 VIPPEIGLLTHLKHLHIDM-NKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIG 169 (248)
Q Consensus 96 ~~~~~~~~l~~L~~L~l~~-n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 169 (248)
.+|. +..+++|++|++++ |.++++ ..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 4677 88899999999996 888765 5788999999999999877777889999999999999999855444444
Q ss_pred CCCCCcEEEecCcccC
Q 044005 170 SLSNLKGLYLYSNRLS 185 (248)
Q Consensus 170 ~l~~L~~L~l~~n~i~ 185 (248)
.+. |+.|++.+|.+.
T Consensus 102 ~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCC-CCEEECCSSCCC
T ss_pred cCC-ceEEEeeCCCcc
Confidence 444 999999999885
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=5.2e-10 Score=95.05 Aligned_cols=196 Identities=11% Similarity=0.110 Sum_probs=118.6
Q ss_pred CCcEEEEeeCCCcccc-ccCcchhHHH-HHHHhhhceeEEEeccccccccCCCCCcCCCCCcccccCCccccCCCCCcEE
Q 044005 33 AKRVISINLNTIGLKV-RFTNSHSHQF-LILHILIKASIYYLASYRLKLATPPISSSLGNNRLSGVIPPEIGLLTHLKHL 110 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~-~~~~~~~~~l-~~L~~l~~L~~L~ls~n~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~~L~~L 110 (248)
..+++.|.+...+..+ .....+. .+ ..+..+.+|+.|.+..... ... .++++. .+.+...+..+++|+.|
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~-~L~~s~~~l~~L~~L~l~~~~~---e~~---~is~~~-~~~L~~ll~~~P~L~~L 177 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIAD-GIVENKEKFAHFEGLFWGDIDF---EEQ---EISWIE-QVDLSPVLDAMPLLNNL 177 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHH-HHHTTHHHHTTCSEEEECCCCT---TTC---CGGGCB-CCBCHHHHHTCTTCCEE
T ss_pred chhcceEEEcccccCCCcHHHHHH-HHHHhhhhcchhhheeecCcch---hhc---cccccc-ccCHHHHHhcCCCCcEE
Confidence 4478888888766442 1101111 11 1233444599998865432 100 001010 11344566778999999
Q ss_pred EccCCccCCC--CCCCCccEEEcCCCccCCCCchhhc--CCCCcceEEeeCC--cCCCC-----Ccccc--cCCCCCcEE
Q 044005 111 HIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMPNSLR--KVKPLLSLGFALN--YLSGV-----IAPSI--GSLSNLKGL 177 (248)
Q Consensus 111 ~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n--~l~~~-----~~~~~--~~l~~L~~L 177 (248)
.++++.-..+ ..+++|++|++..+.+.......+. .+++|++|+++.+ ...+. +...+ ..+++|++|
T Consensus 178 ~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L 257 (362)
T 2ra8_A 178 KIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257 (362)
T ss_dssp EEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE
T ss_pred EEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE
Confidence 9988731111 2367899999988887644334443 6889999988632 21111 11222 247899999
Q ss_pred EecCcccCcchhhhh---cCCCCCCEEEccCCccCcc----ccccccCCCCCcEEeccCCCCCCCC
Q 044005 178 YLYSNRLSRSIRAKI---GNLMQLTELEMDNNKLFGQ----IPKSLRNFTSLNRVHLEQNHLNGNT 236 (248)
Q Consensus 178 ~l~~n~i~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~ 236 (248)
++.+|.+....+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|+++.|.++++.
T Consensus 258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 999998864333322 2467899999999988864 3334456789999999999887543
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=4.8e-09 Score=90.35 Aligned_cols=194 Identities=12% Similarity=0.019 Sum_probs=131.0
Q ss_pred cEEEEeeCCCccccccCcchhHHHHHHHhhhceeEEEeccccccccCCCCCc-------CCCCCcccccCCccccCCCCC
Q 044005 35 RVISINLNTIGLKVRFTNSHSHQFLILHILIKASIYYLASYRLKLATPPISS-------SLGNNRLSGVIPPEIGLLTHL 107 (248)
Q Consensus 35 ~l~~L~l~~~~l~~~~~~~~~~~l~~L~~l~~L~~L~ls~n~~~~~~~~~~~-------~L~~~~~~~~~~~~~~~l~~L 107 (248)
+|+.+.+.. .+......+|. .+++ |+.++++.|.++.+....-. .+. +.+......+|..+++|
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~-~c~~------L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L 228 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFY-YCYN------LKKADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQL 228 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTT-TCTT------CCEEECTTSCCSEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTC
T ss_pred CceEEEeCC-CccEehHHHhh-Cccc------CCeeecCCCcceEechhhEeecccCEEEeC-CchheehhhHhhCCCCC
Confidence 466666665 44433445666 6777 88888888776332221110 222 22444445677888889
Q ss_pred cEEEccCCccCCC-----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCC-----CCCcccccCCCCCcEE
Q 044005 108 KHLHIDMNKLHGS-----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLS-----GVIAPSIGSLSNLKGL 177 (248)
Q Consensus 108 ~~L~l~~n~l~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L 177 (248)
+.+++..+ ++.+ .. ..|+.+.+. +.+...-...|.++.+|+.+.+.++.+. ......|..+.+|+.+
T Consensus 229 ~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 229 KTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp CCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred CEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 99988764 3322 33 578888884 3455333567888999999999888764 2445678888999999
Q ss_pred EecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCC
Q 044005 178 YLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEP 243 (248)
Q Consensus 178 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l 243 (248)
.+.. .+.......|..+.+|+.+.+..+ ++.....+|..+ +|+.+++.+|.+..-....+..+
T Consensus 306 ~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 306 EIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred EeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 9984 465555567888999999999665 664556778888 99999999998765444455544
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=3.6e-09 Score=89.88 Aligned_cols=170 Identities=15% Similarity=0.154 Sum_probs=113.6
Q ss_pred CCcEEEEeeCCCcccc---------ccCcchhHHHHHHHhhhceeEEEecccc-ccccCCCCCcCCCCCcccccCCcccc
Q 044005 33 AKRVISINLNTIGLKV---------RFTNSHSHQFLILHILIKASIYYLASYR-LKLATPPISSSLGNNRLSGVIPPEIG 102 (248)
Q Consensus 33 ~~~l~~L~l~~~~l~~---------~~~~~~~~~l~~L~~l~~L~~L~ls~n~-~~~~~~~~~~~L~~~~~~~~~~~~~~ 102 (248)
.++|+.|.+.+..... .+...+. .++. |+.|+|++|. + .++. +.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~-~~P~------L~~L~L~g~~~l------------------~l~~-~~ 191 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD-AMPL------LNNLKIKGTNNL------------------SIGK-KP 191 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH-TCTT------CCEEEEECCBTC------------------BCCS-CB
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHh-cCCC------CcEEEEeCCCCc------------------eecc-cc
Confidence 4589999997654311 1112222 3455 9999998873 2 1233 33
Q ss_pred CCCCCcEEEccCCccCCC-------CCCCCccEEEcCC--CccCCC-----Cchhh--cCCCCcceEEeeCCcCCCCCcc
Q 044005 103 LLTHLKHLHIDMNKLHGS-------ENLKFLSTVDLSK--NKFSSS-----MPNSL--RKVKPLLSLGFALNYLSGVIAP 166 (248)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~ls~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~l~~~~~~ 166 (248)
+++|++|++..+.++.. ..+++|++|+++. +...+. +...+ ..+++|+.|++.+|.+....+.
T Consensus 192 -~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 192 -RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp -CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred -CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 78999999999887543 4789999999853 221111 11222 2478999999999988643332
Q ss_pred cc---cCCCCCcEEEecCcccCcch----hhhhcCCCCCCEEEccCCccCccccccccC-CCCCcEEeccCCC
Q 044005 167 SI---GSLSNLKGLYLYSNRLSRSI----RAKIGNLMQLTELEMDNNKLFGQIPKSLRN-FTSLNRVHLEQNH 231 (248)
Q Consensus 167 ~~---~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~ 231 (248)
.+ ..+++|++|+++.|.+.... +..+..+++|+.|+++.|.+++.....+.. + ...++++.+.
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 22 25789999999999997543 333355789999999999998765555544 3 4678888876
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=6.8e-08 Score=83.16 Aligned_cols=132 Identities=10% Similarity=0.034 Sum_probs=70.5
Q ss_pred cCCccccCCCCCcEEEccCCccCCC----CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCC-------------
Q 044005 96 VIPPEIGLLTHLKHLHIDMNKLHGS----ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALN------------- 158 (248)
Q Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n------------- 158 (248)
....+|..+++|+.+++..|.++.+ -.+..|+.+.+..+ +...-...|.++.+|+.+.+..+
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~ 249 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESG 249 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCC
T ss_pred ehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCC
Confidence 3445677788888888887766544 11345666666533 33222334555555555555442
Q ss_pred --------cCCCCCcccccCCCCCcEEEecCcccC-----cchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEE
Q 044005 159 --------YLSGVIAPSIGSLSNLKGLYLYSNRLS-----RSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRV 225 (248)
Q Consensus 159 --------~l~~~~~~~~~~l~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 225 (248)
.+.......|..+.+|+.+.+.++.+. ......|..|.+|+.+.+.. .++.....++..|.+|+.+
T Consensus 250 L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp CSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEE
T ss_pred ccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEE
Confidence 222222344555556666666555442 12334555566666666653 2443334555666666666
Q ss_pred eccC
Q 044005 226 HLEQ 229 (248)
Q Consensus 226 ~l~~ 229 (248)
.+..
T Consensus 329 ~lp~ 332 (401)
T 4fdw_A 329 TIPA 332 (401)
T ss_dssp EECT
T ss_pred EECc
Confidence 6643
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=6.8e-09 Score=79.80 Aligned_cols=110 Identities=14% Similarity=0.186 Sum_probs=52.4
Q ss_pred ccccCCCCCcEEEccCC-ccCCC---------CCCCCccEEEcCCCccCCC----CchhhcCCCCcceEEeeCCcCCCC-
Q 044005 99 PEIGLLTHLKHLHIDMN-KLHGS---------ENLKFLSTVDLSKNKFSSS----MPNSLRKVKPLLSLGFALNYLSGV- 163 (248)
Q Consensus 99 ~~~~~l~~L~~L~l~~n-~l~~~---------~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~- 163 (248)
..+...++|++|++++| .+... ...+.|++|++++|.+... +...+...++|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455666666666666 55432 3445566666666665422 122333344555555555555421
Q ss_pred ---CcccccCCCCCcEEEe--cCcccCcc----hhhhhcCCCCCCEEEccCCcc
Q 044005 164 ---IAPSIGSLSNLKGLYL--YSNRLSRS----IRAKIGNLMQLTELEMDNNKL 208 (248)
Q Consensus 164 ---~~~~~~~l~~L~~L~l--~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l 208 (248)
+...+...++|++|++ ++|.+... +...+...+.|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 1233334444555555 44544322 122233334445555544444
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=1.6e-08 Score=77.64 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=73.8
Q ss_pred CCCCCccEEEcCCC-ccCCC----CchhhcCCCCcceEEeeCCcCCCC----CcccccCCCCCcEEEecCcccCcc----
Q 044005 121 ENLKFLSTVDLSKN-KFSSS----MPNSLRKVKPLLSLGFALNYLSGV----IAPSIGSLSNLKGLYLYSNRLSRS---- 187 (248)
Q Consensus 121 ~~~~~L~~L~ls~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~---- 187 (248)
...+.|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.|...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45567888888877 66532 234455567788888888877632 233444556788888888877543
Q ss_pred hhhhhcCCCCCCEEEc--cCCccCcc----ccccccCCCCCcEEeccCCCCC
Q 044005 188 IRAKIGNLMQLTELEM--DNNKLFGQ----IPKSLRNFTSLNRVHLEQNHLN 233 (248)
Q Consensus 188 ~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~ 233 (248)
+...+...+.|++|++ ++|.+.+. +...+...++|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566677888888 77777753 3344555677888888877664
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=1.9e-08 Score=81.57 Aligned_cols=19 Identities=11% Similarity=-0.134 Sum_probs=12.2
Q ss_pred CccceeeeCCC-CcEEEEee
Q 044005 23 ATNFGIHCNSA-KRVISINL 41 (248)
Q Consensus 23 ~~~~~~~c~~~-~~l~~L~l 41 (248)
|.|.|+.|+.. .++..+-.
T Consensus 78 ~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 78 KAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHTTSSCBCTTSCBCCCEEE
T ss_pred HhcCcEEECCCCCEEEEEEe
Confidence 78889999743 35544443
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=5.4e-07 Score=68.27 Aligned_cols=83 Identities=7% Similarity=0.043 Sum_probs=51.2
Q ss_pred CccEEEcCCCccCCCCchhhcCCCCcceEEeeCCc-CCCCCcccccCC----CCCcEEEecCcc-cCcchhhhhcCCCCC
Q 044005 125 FLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNY-LSGVIAPSIGSL----SNLKGLYLYSNR-LSRSIRAKIGNLMQL 198 (248)
Q Consensus 125 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~~~~l~~L 198 (248)
.|++|++++|.++..--..+..+++|++|++++|. ++...-..+..+ ++|++|++++|. |+......+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57777777777665544556667777777777774 443322334443 357777777764 655444555666777
Q ss_pred CEEEccCCc
Q 044005 199 TELEMDNNK 207 (248)
Q Consensus 199 ~~L~L~~n~ 207 (248)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777664
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=8.5e-07 Score=71.88 Aligned_cols=81 Identities=31% Similarity=0.359 Sum_probs=55.7
Q ss_pred cCCCCcceEEeeCCcCCCC--CcccccCCCCCcEEEecCcccCcc-hhhhhcCCCCCCEEEccCCccCcccc-------c
Q 044005 145 RKVKPLLSLGFALNYLSGV--IAPSIGSLSNLKGLYLYSNRLSRS-IRAKIGNLMQLTELEMDNNKLFGQIP-------K 214 (248)
Q Consensus 145 ~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-------~ 214 (248)
..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+. ....+..+ +|++|+|.+|.+.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 3567888888888888752 334556778888888888888653 11233333 78888888888876444 2
Q ss_pred cccCCCCCcEEe
Q 044005 215 SLRNFTSLNRVH 226 (248)
Q Consensus 215 ~l~~l~~L~~L~ 226 (248)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 366788888776
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=7.7e-07 Score=67.41 Aligned_cols=82 Identities=11% Similarity=0.154 Sum_probs=48.3
Q ss_pred CcceEEeeCCcCCCCCcccccCCCCCcEEEecCcc-cCcchhhhhcCC----CCCCEEEccCCc-cCccccccccCCCCC
Q 044005 149 PLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNR-LSRSIRAKIGNL----MQLTELEMDNNK-LFGQIPKSLRNFTSL 222 (248)
Q Consensus 149 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~L 222 (248)
.|++|+++++.++...-..+..+++|++|++++|. |+......+..+ ++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46666666666654444455566666777766663 544333444442 356667666653 665544555666666
Q ss_pred cEEeccCC
Q 044005 223 NRVHLEQN 230 (248)
Q Consensus 223 ~~L~l~~n 230 (248)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 77766665
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.77 E-value=1.7e-05 Score=61.11 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=43.7
Q ss_pred hhcCCCCcceEEeeCCcCCCC----CcccccCCCCCcEEEecCcccCcc----hhhhhcCCCCCCEEEccCC---ccCc-
Q 044005 143 SLRKVKPLLSLGFALNYLSGV----IAPSIGSLSNLKGLYLYSNRLSRS----IRAKIGNLMQLTELEMDNN---KLFG- 210 (248)
Q Consensus 143 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n---~l~~- 210 (248)
.+..-..|+.|++++|.+... +...+..-.+|++|+++.|.|... +...+..-..|++|+|++| .+.+
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 333444555555555555421 222333445566666666666432 2233444455666666543 2232
Q ss_pred ---cccccccCCCCCcEEeccCCC
Q 044005 211 ---QIPKSLRNFTSLNRVHLEQNH 231 (248)
Q Consensus 211 ---~~~~~l~~l~~L~~L~l~~n~ 231 (248)
.+...+...+.|++|+++.|.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCcCeEeccCCC
Confidence 233445555666666665543
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.67 E-value=0.00023 Score=60.73 Aligned_cols=85 Identities=11% Similarity=0.086 Sum_probs=56.7
Q ss_pred hhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCC
Q 044005 143 SLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSL 222 (248)
Q Consensus 143 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 222 (248)
.+..+.+|+.+.+..+ +.......+..+.+|+.+++..+ +.......|..+.+|+.+.+..+ ++.....++..|.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4556677777777544 44344456777788888887644 44344456777888888888766 554445667788888
Q ss_pred cEEeccCC
Q 044005 223 NRVHLEQN 230 (248)
Q Consensus 223 ~~L~l~~n 230 (248)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 88888654
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.66 E-value=0.00022 Score=60.75 Aligned_cols=124 Identities=12% Similarity=0.076 Sum_probs=89.7
Q ss_pred CCccccCCCCCcEEEccCCccCCC--CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCC
Q 044005 97 IPPEIGLLTHLKHLHIDMNKLHGS--ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNL 174 (248)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 174 (248)
....+..+..++.+......+... ..+.+|+.+.+..+ +...-...|.++.+|+.+.+..+ ++......|..+.+|
T Consensus 268 ~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 268 GGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp CSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred eccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 345567777787777766655433 56778999998765 44233456888999999999654 554556678889999
Q ss_pred cEEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEE
Q 044005 175 KGLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRV 225 (248)
Q Consensus 175 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 225 (248)
+.+.+..+ +.......+..|.+|+.+.+..+ ++ .+...+..+++|+.+
T Consensus 346 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 346 SNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 99999876 55455567889999999999765 33 345668888888875
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=0.00017 Score=55.56 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=47.6
Q ss_pred CCCccEEEcCCCccCCC----CchhhcCCCCcceEEeeCCcCCCC----CcccccCCCCCcEEEecCc---ccCc----c
Q 044005 123 LKFLSTVDLSKNKFSSS----MPNSLRKVKPLLSLGFALNYLSGV----IAPSIGSLSNLKGLYLYSN---RLSR----S 187 (248)
Q Consensus 123 ~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n---~i~~----~ 187 (248)
-+.|++|++++|.+... +...+..-++|++|++++|.|... +...+....+|++|+++++ .+.. .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 34566666666665422 233344456677777777766532 2234445566777777643 3332 2
Q ss_pred hhhhhcCCCCCCEEEccCCcc
Q 044005 188 IRAKIGNLMQLTELEMDNNKL 208 (248)
Q Consensus 188 ~~~~~~~l~~L~~L~L~~n~l 208 (248)
+...+..-+.|++|++..|.+
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 334455566777777776654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.36 E-value=0.0022 Score=54.07 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=79.7
Q ss_pred ccCCCCCcEEEccCCcc--C--CCCCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcE
Q 044005 101 IGLLTHLKHLHIDMNKL--H--GSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKG 176 (248)
Q Consensus 101 ~~~l~~L~~L~l~~n~l--~--~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 176 (248)
+..+.+|+.+.+..+-- . .+..+..|+.+.+..+ +...-...+..+.+|+.+.+..+ +.......+..+.+|+.
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 34455566665544311 1 1145566777777654 33222345666777888877543 43333456677888888
Q ss_pred EEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCC
Q 044005 177 LYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQN 230 (248)
Q Consensus 177 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 230 (248)
+.+..+.+.......+..+.+|+.+.|..+ ++.....++..|.+|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 888877776555567788888888888654 55344566778888888877543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.33 E-value=0.0012 Score=56.29 Aligned_cols=125 Identities=10% Similarity=0.153 Sum_probs=54.2
Q ss_pred cccCCCCCcEEEccCCccC----CCCCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCc
Q 044005 100 EIGLLTHLKHLHIDMNKLH----GSENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLK 175 (248)
Q Consensus 100 ~~~~l~~L~~L~l~~n~l~----~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 175 (248)
+|..+.+|+.+.+..+... .+..+..|+.+.+.. .+.......|.++.+|+.+.+..+ ++......|..+.+|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 4445555555555443221 113445556655542 222112234555556666655432 3323334455556666
Q ss_pred EEEecCcccCcchhhhhcCCCCCCEEEccCCccCccccccccCCCCCcEEeccCC
Q 044005 176 GLYLYSNRLSRSIRAKIGNLMQLTELEMDNNKLFGQIPKSLRNFTSLNRVHLEQN 230 (248)
Q Consensus 176 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 230 (248)
.+.+..+ +.......|..|.+|+.+.+.++.... ..+..+.+|+.+.+..+
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 6665433 322333445556666666665553321 23344555555555443
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.23 E-value=0.0065 Score=51.57 Aligned_cols=108 Identities=12% Similarity=0.215 Sum_probs=73.7
Q ss_pred CCCCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCE
Q 044005 121 ENLKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTE 200 (248)
Q Consensus 121 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 200 (248)
..+..|+.+.+..+... .....+.++.+|+.+.+.. .+.......|..+.+|+.+.+..+ +.......|..|.+|+.
T Consensus 262 ~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 34556777776554332 2234566778888888753 344344556778889999998765 44344567888899999
Q ss_pred EEccCCccCccccccccCCCCCcEEeccCCCC
Q 044005 201 LEMDNNKLFGQIPKSLRNFTSLNRVHLEQNHL 232 (248)
Q Consensus 201 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 232 (248)
+.+..+ ++.....+|..|.+|+.+++.++..
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 998655 5544456788899999999987643
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.88 E-value=0.017 Score=48.52 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=79.3
Q ss_pred CCCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEE
Q 044005 123 LKFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELE 202 (248)
Q Consensus 123 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 202 (248)
+..++.+.+..+ +.......+..+..|+.+.+..+ +.......+..+.+|+.+.+..+ +.......+..+.+|+.+.
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 344555555443 22122345566778888888654 44344456777888999988654 4333445678899999999
Q ss_pred ccCCccCccccccccCCCCCcEEeccCCCCCCCCCCCCCCCCCCC
Q 044005 203 MDNNKLFGQIPKSLRNFTSLNRVHLEQNHLNGNTYEHIPEPNFHR 247 (248)
Q Consensus 203 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~i~~l~~l~ 247 (248)
+.++.++.....++..|.+|+.+.+..+ ++.-....|.++..|+
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 9988887555677889999999999654 4433334566655554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.21 E-value=0.014 Score=41.62 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=25.7
Q ss_pred EEEccCCccC--CC-CCC-CCccEEEcCCCccCCCCchhhcCCCCcceEEeeCCcC
Q 044005 109 HLHIDMNKLH--GS-ENL-KFLSTVDLSKNKFSSSMPNSLRKVKPLLSLGFALNYL 160 (248)
Q Consensus 109 ~L~l~~n~l~--~~-~~~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 160 (248)
.++.+++.++ .+ ..+ .++++|++++|.|+...+..|..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 33 122 2455666666665532233445555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.06 E-value=0.012 Score=41.91 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=33.1
Q ss_pred EEEcCCCccC-CCCchhhcCCCCcceEEeeCCcCCCCCcccccCCCCCcEEEecCccc
Q 044005 128 TVDLSKNKFS-SSMPNSLRKVKPLLSLGFALNYLSGVIAPSIGSLSNLKGLYLYSNRL 184 (248)
Q Consensus 128 ~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 184 (248)
.++.+++.++ ..+|..+ ..+|++|++++|.++...+..+..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5566666654 2444332 23577777777777654445556666777777777655
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.68 E-value=42 Score=22.01 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=27.6
Q ss_pred CCCCCcccccCCCCCcEEEecCcccCcchhhhhcCCCCCCEEEccCC
Q 044005 160 LSGVIAPSIGSLSNLKGLYLYSNRLSRSIRAKIGNLMQLTELEMDNN 206 (248)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 206 (248)
++......|..+.+|+.+.+..+ ++......|..|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33333456667777777777664 22233455667777777776553
Done!