BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044007
         (378 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 32/159 (20%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
           C  CGK F R  +L  H R H  E         P K              +  + +S  +
Sbjct: 24  CPECGKSFSRSDHLAEHQRTHTGE--------KPYK------------CPECGKSFSDKK 63

Query: 268 EGCRWNKKHAKFQPLKSMICAKNH--------YKRSHC-PKMYVCKRCNRKQFSVLSDLR 318
           +  R  + H   +P K   C K+         ++R+H   K Y C  C  K FS L+ LR
Sbjct: 64  DLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECG-KSFSQLAHLR 122

Query: 319 THEK-HCGDLKWQC-SCGTTFSRKDKLMGHVALFVGHTP 355
            H++ H G+  ++C  CG +FSR+D L  H     G  P
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP 161



 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 44/148 (29%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
           C  CGK F + ANLR H R H  E                             + Y+CP+
Sbjct: 80  CPECGKSFSQRANLRAHQRTHTGE-----------------------------KPYACPE 110

Query: 268 EGCRWNKKHAKFQPLKSMICAKNHYKRSHC-PKMYVCKRCNRKQFSVLSDLRTHEK-HCG 325
            G    K  ++   L++       ++R+H   K Y C  C  K FS   +L TH++ H G
Sbjct: 111 CG----KSFSQLAHLRA-------HQRTHTGEKPYKCPECG-KSFSREDNLHTHQRTHTG 158

Query: 326 DLKWQC-SCGTTFSRKDKLMGHVALFVG 352
           +  ++C  CG +FSR+D L  H     G
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRTHTG 186


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
          Length = 87

 Score = 37.7 bits (86), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC-SCGTTFSRKDKLMGH 346
           K Y C  C  K FS  SDL+ H++ H G+  ++C  CG +FSR D L  H
Sbjct: 31  KPYKCPECG-KSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH 79



 Score = 35.4 bits (80), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC-SCGTTFSRKDKLMGHVALFVGHTP 355
           K Y C  C  K FS  S+L+ H++ H G+  ++C  CG +FS+   L  H     G  P
Sbjct: 3   KPYKCPECG-KSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60



 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C  CGK F + +NL+ H R H  E
Sbjct: 7   CPECGKSFSQSSNLQKHQRTHTGE 30


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 37.4 bits (85), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 14/101 (13%)

Query: 261 RKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTH 320
           R  +CP +GC        F+   +M      +  +H P+++VC  C  K F   S L+ H
Sbjct: 4   RTIACPHKGCT-----KMFRDNSAM----RKHLHTHGPRVHVCAECG-KAFVESSKLKRH 53

Query: 321 E-KHCGDLKWQCS---CGTTFSRKDKLMGHVALFVGHTPAV 357
           +  H G+  +QC+   CG  FS    L  HV +  G  P V
Sbjct: 54  QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94



 Score = 35.4 bits (80), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 205 THYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKI---AR 261
            H C  CGK F   + L+ H   H  E           K+   S+  N  + ++I    R
Sbjct: 34  VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR--FSLDFNLRTHVRIHTGDR 91

Query: 262 KYSCPQEGCRWNKKHAKFQPLKSMI 286
            Y CP +GC  NKK A+   LKS I
Sbjct: 92  PYVCPFDGC--NKKFAQSTNLKSHI 114


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
           Of Zinc Finger Protein 435
          Length = 77

 Score = 34.3 bits (77), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC-SCGTTFSRKDKLMGHVALFVGHTPA 356
           + Y C  C  K FS  SDL  H + H G+  ++C  CG  F ++  L+GH  +  G  P+
Sbjct: 17  RRYKCDECG-KSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
           Zinc-Binding Domain Of The Zinc Finger Protein 64,
           Isoforms 1 And 2
          Length = 96

 Score = 33.9 bits (76), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 206 HYCQVCGKGFKRDANLRMHMRAH 228
           H C+VCGK F R   L+ HMR H
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCH 31


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
          Length = 119

 Score = 32.3 bits (72), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 289 KNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC---SCGTTFSRKDKLM 344
           K H +R    K + CK C RK FS    L+TH + H G+  + C   SC   F+R D+L+
Sbjct: 55  KRHQRRHTGVKPFQCKTCQRK-FSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113

Query: 345 GH 346
            H
Sbjct: 114 RH 115



 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 306 CNRKQFSVLSDLRTH-EKHCGDLKWQC---SCGTTFSRKDKLMGHVALFVGHTP 355
           CN++ F  LS L+ H  KH G+  +QC    C   FSR D+L  H     G  P
Sbjct: 14  CNKRYFK-LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 32.0 bits (71), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 206 HYCQVCGKGFKRDANLRMHMRAH 228
           H CQVCGK F + +NL  H R H
Sbjct: 58  HKCQVCGKAFSQSSNLITHSRKH 80



 Score = 31.6 bits (70), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGD 230
           C++CGK FKR + L  H+  H D
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHSD 26


>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 31.6 bits (70), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 208 CQVCGKGFKRDANLRMHMRAH 228
           C+ CGKG+ R  NL MH R H
Sbjct: 15  CEDCGKGYNRRLNLDMHQRVH 35


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
           Northeast Structural Genomics Consortium
          Length = 74

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTP 355
           K Y C RC +  F    +L +H+  H G+  ++C+ CG  F+R   L  H  +  G  P
Sbjct: 16  KPYKCDRC-QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C +CG  F R ANL+ H R H  E
Sbjct: 48  CNICGAQFNRPANLKTHTRIHSGE 71


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C VCGK F   A+L  H+R H  E
Sbjct: 15  CNVCGKAFVLSAHLNQHLRVHTQE 38


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
           Zinc Finger Protein 278
          Length = 95

 Score = 30.4 bits (67), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 290 NHYKRSHC-PKMYVCKRCN---RKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMG 345
           N +K SH   K Y C  C    +++  +   +R+H+   G      SCG  FSR D L G
Sbjct: 24  NRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNG 83

Query: 346 HV 347
           H+
Sbjct: 84  HI 85


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
           Nmr, 25 Structures
          Length = 60

 Score = 30.0 bits (66), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTN 240
           C+VC + F R  +L+ H R+H +E      L N
Sbjct: 5   CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCN 37


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
           Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAAL 238
           C+ CG+ F +  NL +H R H DE   T  +
Sbjct: 20  CKFCGRHFTKSYNLLIHERTHTDERPYTCDI 50


>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           423- 455) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 29.6 bits (65), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C  CGKG+KR  +L  H R H  E
Sbjct: 15  CVECGKGYKRRLDLDFHQRVHTGE 38


>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           687- 719) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 206 HY-CQVCGKGFKRDANLRMHMRAHGDE 231
           HY C  CGK F R + L MH R H  E
Sbjct: 12  HYECSECGKAFARKSTLIMHQRIHTGE 38


>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C+VC + F R  +L+ H R+H +E
Sbjct: 5   CEVCTRAFARQEHLKRHYRSHTNE 28


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
           Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 44/126 (34%), Gaps = 40/126 (31%)

Query: 199 DLLAKYTHYCQV--CGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESA 256
           DL  +  HYC    C K + + ++L+ H+R H  E                         
Sbjct: 9   DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGE------------------------- 43

Query: 257 IKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSD 316
               + Y C  EGC W     +F     +     HY++    K + C  CNR  FS    
Sbjct: 44  ----KPYKCTWEGCDW-----RFARSDELT---RHYRKHTGAKPFQCGVCNR-SFSRSDH 90

Query: 317 LRTHEK 322
           L  H K
Sbjct: 91  LALHMK 96


>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           628- 660) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 29.3 bits (64), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C  CGKGF R ++L  H+R H  E
Sbjct: 15  CNECGKGFGRRSHLAGHLRLHSRE 38


>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C+VC + F R   L+ H R+H +E
Sbjct: 5   CEVCTRAFARQEYLKRHYRSHTNE 28


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE--YKTTAALTNPLKK 244
           C VC + F+R   LR+HM +H  E  YK ++     ++K
Sbjct: 69  CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQK 107


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C VCGK F + ++L+ H R H  E
Sbjct: 15  CDVCGKEFSQSSHLQTHQRVHTGE 38


>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C+VC + F R   L+ H R+H +E
Sbjct: 5   CEVCTRAFARQEALKRHYRSHTNE 28


>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 90

 Score = 28.5 bits (62), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 309 KQFSVLSDLRTHEK-HCGDLKWQCS---CGTTFSRKDKLMGHVALFVGHTP 355
           K ++  S L+ H + H G+  + C    CG  F+R D+L  H     GH P
Sbjct: 16  KTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 28.5 bits (62), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C+ CGKG+    NL MH + H  E
Sbjct: 15  CEKCGKGYNSKFNLDMHQKVHTGE 38


>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 89

 Score = 28.5 bits (62), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 309 KQFSVLSDLRTHEK-HCGDLKWQCS---CGTTFSRKDKLMGHVALFVGHTP 355
           K ++  S L+ H + H G+  + C    CG  F+R D+L  H     GH P
Sbjct: 15  KTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65


>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
          Length = 29

 Score = 28.5 bits (62), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C+ CGK F    NL+ H+R H  E
Sbjct: 5   CRECGKQFTTSGNLKRHLRIHSGE 28


>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           768- 800) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 28.5 bits (62), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 205 THYCQVCGKGFKRDANLRMHMRAHGDE 231
           +H C  CG+GF   ++L  H R H  E
Sbjct: 12  SHQCHECGRGFTLKSHLNQHQRIHTGE 38


>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           379- 411) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 28.5 bits (62), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C  CGK F R + L MH + H  E
Sbjct: 15  CTECGKAFTRKSTLSMHQKIHTGE 38


>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           355- 385) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.5 bits (62), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 331 CSCGTTFSRKDKLMGHVALFVGHT 354
           C CG  FSRKD+L+ H     G +
Sbjct: 16  CECGKVFSRKDQLVSHQKTHSGQS 39


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.5 bits (62), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C  CGK F R++ L +H R H  E
Sbjct: 15  CSECGKAFIRNSQLIVHQRTHSGE 38


>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           255- 287) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 28.5 bits (62), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C+ CGK F  D+ L+ H R H  E
Sbjct: 15  CEECGKAFIHDSQLQEHQRIHTGE 38


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 28.1 bits (61), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C  CGK F   + L +HMR H  E
Sbjct: 15  CSECGKAFSSKSYLIIHMRTHSGE 38


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 28.1 bits (61), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C  CGK F + ANL  H R H  E
Sbjct: 15  CGECGKAFAQKANLTQHQRIHTGE 38


>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 42

 Score = 28.1 bits (61), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 325 GDLKWQCS-CGTTFSRKDKLMGHVALFVGHT 354
           G+  ++CS CG  F+RKD+L+ H     G +
Sbjct: 7   GENPYECSECGKAFNRKDQLISHQRTHAGES 37


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.129    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,743,013
Number of Sequences: 62578
Number of extensions: 360691
Number of successful extensions: 924
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 103
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)