BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044009
MHHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQN
LALLGNQYLPDLNRSDSPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVS
ITSSLFNSLLLPPTLSRIRSPYMLSWSHKAPSHSSCQPTRPIALSRHRTKRG

High Scoring Gene Products

Symbol, full name Information P value
AT1G31410 protein from Arabidopsis thaliana 2.6e-14
VC1425
Spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
protein from Vibrio cholerae O1 biovar El Tor str. N16961 0.00033
VC_1425
spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
protein from Vibrio cholerae O1 biovar El Tor 0.00033

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044009
        (172 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2206194 - symbol:AT1G31410 species:3702 "Arabi...   192  2.6e-14   1
UNIPROTKB|Q9KS36 - symbol:VC1425 "Spermidine/putrescine A...   109  0.00033   1
TIGR_CMR|VC_1425 - symbol:VC_1425 "spermidine/putrescine ...   109  0.00033   1


>TAIR|locus:2206194 [details] [associations]
            symbol:AT1G31410 species:3702 "Arabidopsis thaliana"
            [GO:0005215 "transporter activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006810 "transport" evidence=IEA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001188
            PRINTS:PR00909 EMBL:CP002684 GO:GO:0009941 GO:GO:0042597
            eggNOG:COG0687 GO:GO:0019808 GO:GO:0015846 EMBL:BT015412
            IPI:IPI00520881 RefSeq:NP_174426.2 UniGene:At.40347
            ProteinModelPortal:Q66GJ0 PaxDb:Q66GJ0 PRIDE:Q66GJ0
            EnsemblPlants:AT1G31410.1 GeneID:840031 KEGG:ath:AT1G31410
            TAIR:At1g31410 InParanoid:Q66GJ0 OMA:GTMVIAY PhylomeDB:Q66GJ0
            ProtClustDB:CLSN2680340 Genevestigator:Q66GJ0 Uniprot:Q66GJ0
        Length = 524

 Score = 192 (72.6 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query:    12 KDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDI------GRIAVQQNLALLG 65
             +DW DLW+P+LAGRI+MVNSPREV+G VLKYM  SYN+ D+      GR+AV++NLA L 
Sbjct:   262 EDWADLWRPELAGRIAMVNSPREVVGAVLKYMRASYNTTDLDSQVPGGRLAVEKNLASLM 321

Query:    66 NQ 67
              Q
Sbjct:   322 KQ 323


>UNIPROTKB|Q9KS36 [details] [associations]
            symbol:VC1425 "Spermidine/putrescine ABC transporter,
            periplasmic spermidine/putrescine-binding protein" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0015417
            "polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
            "putrescine transport" evidence=ISS] [GO:0015848 "spermidine
            transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
            PRINTS:PR00909 GenomeReviews:AE003852_GR GO:GO:0042597 KO:K11069
            GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 HSSP:P23861
            OMA:LYSWADY EMBL:AE004221 PIR:C82201 RefSeq:NP_231068.1
            ProteinModelPortal:Q9KS36 SMR:Q9KS36 DNASU:2614057 GeneID:2614057
            KEGG:vch:VC1425 PATRIC:20081912 ProtClustDB:CLSK874368
            Uniprot:Q9KS36
        Length = 366

 Score = 109 (43.4 bits), Expect = 0.00033, P = 0.00033
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query:     4 NMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSND 51
             +M + N F+ W DLW+P+L G++ +++  REV    L+ +G S NS D
Sbjct:   163 DMYDPNDFQSWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSGNSTD 210


>TIGR_CMR|VC_1425 [details] [associations]
            symbol:VC_1425 "spermidine/putrescine ABC transporter,
            periplasmic spermidine/putrescine-binding protein" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0015417
            "polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
            "putrescine transport" evidence=ISS] [GO:0015848 "spermidine
            transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
            PRINTS:PR00909 GenomeReviews:AE003852_GR GO:GO:0042597 KO:K11069
            GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 HSSP:P23861
            OMA:LYSWADY EMBL:AE004221 PIR:C82201 RefSeq:NP_231068.1
            ProteinModelPortal:Q9KS36 SMR:Q9KS36 DNASU:2614057 GeneID:2614057
            KEGG:vch:VC1425 PATRIC:20081912 ProtClustDB:CLSK874368
            Uniprot:Q9KS36
        Length = 366

 Score = 109 (43.4 bits), Expect = 0.00033, P = 0.00033
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query:     4 NMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSND 51
             +M + N F+ W DLW+P+L G++ +++  REV    L+ +G S NS D
Sbjct:   163 DMYDPNDFQSWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSGNSTD 210


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       172   0.00093  108 3  11 22  0.40    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  165 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.95u 0.23s 17.18t   Elapsed:  00:00:01
  Total cpu time:  16.95u 0.23s 17.18t   Elapsed:  00:00:01
  Start:  Sat May 11 04:18:27 2013   End:  Sat May 11 04:18:28 2013

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