BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044009
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1POT|A Chain A, Spermidine/putrescine-binding Protein Complexed With
           Spermidine (monomer Form)
          Length = 325

 Score = 37.4 bits (85), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 14  WKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQN 60
           W DLW+P+  G + + +  REV    L+ +G S N+ D   I    N
Sbjct: 128 WADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYN 174


>pdb|1POY|1 Chain 1, SpermidinePUTRESCINE-Binding Protein Complexed With
           Spermidine (Dimer Form)
 pdb|1POY|2 Chain 2, SpermidinePUTRESCINE-Binding Protein Complexed With
           Spermidine (Dimer Form)
 pdb|1POY|3 Chain 3, SpermidinePUTRESCINE-Binding Protein Complexed With
           Spermidine (Dimer Form)
 pdb|1POY|4 Chain 4, SpermidinePUTRESCINE-Binding Protein Complexed With
           Spermidine (Dimer Form)
          Length = 323

 Score = 37.4 bits (85), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 14  WKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQN 60
           W DLW+P+  G + + +  REV    L+ +G S N+ D   I    N
Sbjct: 126 WADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYN 172


>pdb|2V84|A Chain A, Crystal Structure Of The Tp0655 (Tppotd) Lipoprotein Of
           Treponema Pallidum
          Length = 343

 Score = 34.7 bits (78), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 14  WKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLN 73
           W    +  LA R+SM++  REV+G  L  +G  YN N      + Q   L+ + + P+L 
Sbjct: 148 WSIFSRKDLAYRMSMMDDMREVMGAALASLG--YNVNTKNEQELAQAAILVTDHWKPNLV 205

Query: 74  RSDS 77
           + DS
Sbjct: 206 KFDS 209


>pdb|4EQB|A Chain A, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
           Transporter Substrate-Binding Protein From Streptococcus
           Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
           And Hepes.
 pdb|4EQB|B Chain B, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
           Transporter Substrate-Binding Protein From Streptococcus
           Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
           And Hepes
          Length = 330

 Score = 34.3 bits (77), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 14  WKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSND 51
           W DLW+ +    I + +  REV+G  L  +G S NS D
Sbjct: 131 WDDLWKLEYKNSIMLFDGAREVLGLGLNSLGYSLNSKD 168


>pdb|4GL0|A Chain A, Putative SpermidinePUTRESCINE ABC TRANSPORTER FROM
           LISTERIA Monocytogenes
          Length = 333

 Score = 32.0 bits (71), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 11  FKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNS 49
           F  W  L+ P+L  +I +++  REV G  L  +G S N 
Sbjct: 131 FDTWNALFDPELKNQILLIDGAREVXGLGLNSLGYSLND 169


>pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli
 pdb|1A99|B Chain B, Putrescine Receptor (Potf) From E. Coli
 pdb|1A99|C Chain C, Putrescine Receptor (Potf) From E. Coli
 pdb|1A99|D Chain D, Putrescine Receptor (Potf) From E. Coli
          Length = 344

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 26  ISMVNSPREVIGTVLKYMGVSYNS 49
           +S +++P EV  TVL Y+G   NS
Sbjct: 151 VSFLDAPEEVFATVLNYLGKDPNS 174


>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
           HLYB-Nbd
 pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
           HLYB-Nbd
 pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
           HLYB-Nbd
 pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
           HLYB-Nbd
          Length = 241

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 10  GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYL 69
           G    K ++  KLAG    ++  RE   T++   G   +     RIA+ +  AL+ N  +
Sbjct: 103 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR--ALVNNPKI 160

Query: 70  PDLNRSDSPSRLSYPTPH--LRVSDKQCS-----IKAIRLSRSRIDQRLTMTD 115
             L   ++ S L Y + H  +R   K C      I A RLS  +   R+ + +
Sbjct: 161 --LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVME 211


>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
           Abc-Transporter Hlyb In Complex With Adp
 pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
           With Bound Atp
 pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
           With Bound Atp
 pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
           With Bound Atp
 pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
           With Bound Atp
          Length = 247

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 10  GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYL 69
           G    K ++  KLAG    ++  RE   T++   G   +     RIA+ +  AL+ N  +
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR--ALVNNPKI 166

Query: 70  PDLNRSDSPSRLSYPTPH--LRVSDKQCS-----IKAIRLSRSRIDQRLTMTD 115
             L   ++ S L Y + H  +R   K C      I A RLS  +   R+ + +
Sbjct: 167 --LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVME 217


>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
           With Tnp-Adp
          Length = 243

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 10  GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYL 69
           G    K ++  KLAG    ++  RE   T++   G   +     RIA+ +  AL+ N  +
Sbjct: 105 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR--ALVNNPKI 162

Query: 70  PDLNRSDSPSRLSYPTPHL 88
             L   ++ S L Y + H+
Sbjct: 163 --LIFDEATSALDYESEHV 179


>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
           Abc-atpase In Complex With Tnp-adp
          Length = 243

 Score = 26.9 bits (58), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 10  GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYL 69
           G    K ++  KLAG    ++  RE   T++   G   +     RIA+ +  AL+ N  +
Sbjct: 105 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR--ALVNNPKI 162

Query: 70  PDLNRSDSPSRLSYPTPHL 88
             L   ++ S L Y + H+
Sbjct: 163 --LIFDEATSALDYESEHV 179


>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
          Length = 241

 Score = 26.9 bits (58), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 10  GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYL 69
           G    K ++  KLAG    ++  RE   T++   G   +     RIA+ +  AL+ N  +
Sbjct: 103 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR--ALVNNPKI 160

Query: 70  PDLNRSDSPSRLSYPTPHL 88
             L   ++ S L Y + H+
Sbjct: 161 --LIFDEATSALDYESEHV 177


>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
           Bound State
          Length = 247

 Score = 26.9 bits (58), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 10  GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYL 69
           G    K ++  KLAG    ++  RE   T++   G   +     RIA+ +  AL+ N  +
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR--ALVNNPKI 166

Query: 70  PDLNRSDSPSRLSYPTPHL 88
             L   ++ S L Y + H+
Sbjct: 167 --LIFDEATSALDYESEHV 183


>pdb|1NX9|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           S205a Mutant Complexed With Ampicillin
 pdb|1NX9|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           S205a Mutant Complexed With Ampicillin
 pdb|1NX9|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           S205a Mutant Complexed With Ampicillin
 pdb|1NX9|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           S205a Mutant Complexed With Ampicillin
          Length = 652

 Score = 26.6 bits (57), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 5   MINENGFKDWKDLW---QPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNL 61
           M+ E G  D +D+W       A + + V +P  ++    ++ GV+YN + +G +  + + 
Sbjct: 290 MLWEQGLWDQEDMWGAIHAWQALKDADVKAPNTLVMGPWRHSGVNYNGSTLGPLEFEGDT 349

Query: 62  ALLGNQYLPDLNR 74
           A   +QY  D+ R
Sbjct: 350 A---HQYRRDVFR 359


>pdb|2B4K|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Complexed With Phenylglycine
 pdb|2B4K|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Complexed With Phenylglycine
 pdb|2B4K|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Complexed With Phenylglycine
 pdb|2B4K|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Complexed With Phenylglycine
 pdb|2B9V|A Chain A, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|B Chain B, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|C Chain C, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|D Chain D, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|E Chain E, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|F Chain F, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|G Chain G, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|H Chain H, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|I Chain I, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|J Chain J, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|K Chain K, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|L Chain L, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|M Chain M, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|N Chain N, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|O Chain O, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
 pdb|2B9V|P Chain P, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
          Length = 652

 Score = 26.6 bits (57), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 5   MINENGFKDWKDLW---QPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNL 61
           M+ E G  D +D+W       A + + V +P  ++    ++ GV+YN + +G +  + + 
Sbjct: 290 MLWEQGLWDQEDMWGAIHAWQALKDADVKAPNTLVMGPWRHSGVNYNGSTLGPLEFEGDT 349

Query: 62  ALLGNQYLPDLNR 74
           A   +QY  D+ R
Sbjct: 350 A---HQYRRDVFR 359


>pdb|1RYY|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|E Chain E, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|F Chain F, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|G Chain G, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
 pdb|1RYY|H Chain H, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
           Y206a Mutant
          Length = 652

 Score = 26.6 bits (57), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 5   MINENGFKDWKDLW---QPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNL 61
           M+ E G  D +D+W       A + + V +P  ++    ++ GV+YN + +G +  + + 
Sbjct: 290 MLWEQGLWDQEDMWGAIHAWQALKDADVKAPNTLVMGPWRHSGVNYNGSTLGPLEFEGDT 349

Query: 62  ALLGNQYLPDLNR 74
           A   +QY  D+ R
Sbjct: 350 A---HQYRRDVFR 359


>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
           Complex With Adp
 pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
           With Bound Atp
 pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
           With Bound Atp
 pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
           With Bound Atp
 pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
           With Bound Atp
          Length = 247

 Score = 26.2 bits (56), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 10  GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYL 69
           G    K ++  KLAG    ++  RE   T++   G   +     RIA+ +  AL+ N  +
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR--ALVNNPKI 166

Query: 70  PDLNRSDSPSRLSYPTPHL 88
              +++ S   L Y + H+
Sbjct: 167 LIFDQATSA--LDYESEHV 183


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,925,978
Number of Sequences: 62578
Number of extensions: 171276
Number of successful extensions: 339
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 17
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)