Query 044009
Match_columns 172
No_of_seqs 131 out of 1153
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 10:33:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0687 PotD Spermidine/putres 99.6 2.3E-16 4.9E-21 137.9 4.1 139 2-148 144-293 (363)
2 PRK09501 potD spermidine/putre 99.5 2.3E-14 4.9E-19 123.5 4.2 137 2-149 139-280 (348)
3 PRK10682 putrescine transporte 99.3 5E-12 1.1E-16 109.8 4.6 144 2-149 143-301 (370)
4 PF13343 SBP_bac_6: Bacterial 98.8 4.7E-10 1E-14 91.3 -2.0 136 2-149 62-199 (242)
5 TIGR03227 PhnS 2-aminoethylpho 98.7 5E-09 1.1E-13 91.7 1.4 132 2-149 146-291 (367)
6 TIGR03261 phnS2 putative 2-ami 98.4 5.4E-08 1.2E-12 83.4 0.9 130 2-147 131-270 (334)
7 TIGR01254 sfuA ABC transporter 98.3 1.4E-07 3E-12 79.7 -0.7 135 2-148 112-250 (304)
8 TIGR01276 thiB thiamine ABC tr 98.2 2.5E-07 5.5E-12 78.2 0.2 135 2-148 112-249 (309)
9 PRK11622 hypothetical protein; 97.9 3.2E-06 6.9E-11 75.1 0.4 140 2-149 164-328 (401)
10 PRK11205 tbpA thiamine transpo 97.8 3.7E-06 8E-11 72.0 -0.1 30 2-32 133-162 (330)
11 PRK15046 2-aminoethylphosphona 97.7 2.4E-05 5.1E-10 67.8 2.4 59 2-70 141-204 (349)
12 COG1840 AfuA ABC-type Fe3+ tra 96.7 0.0029 6.3E-08 54.1 5.1 80 10-95 103-185 (299)
13 PF13416 SBP_bac_8: Bacterial 96.6 0.001 2.2E-08 54.1 1.5 96 2-97 100-199 (281)
14 TIGR00971 3a0106s03 sulfate/th 94.1 0.096 2.1E-06 45.8 5.2 84 10-96 116-206 (315)
15 COG4143 TbpA ABC-type thiamine 92.3 0.078 1.7E-06 48.0 1.9 61 2-67 137-197 (336)
16 PRK10852 thiosulfate transport 82.6 2.5 5.5E-05 37.7 5.1 81 10-94 133-221 (338)
17 PRK10752 sulfate transporter s 76.6 3.9 8.4E-05 36.4 4.3 57 10-70 127-187 (329)
18 TIGR01256 modA molybdenum ABC 44.4 16 0.00035 28.9 2.0 21 10-31 85-106 (216)
19 PF13531 SBP_bac_11: Bacterial 32.6 61 0.0013 25.8 3.6 21 9-31 91-111 (230)
20 PF12253 CAF1A: Chromatin asse 27.1 40 0.00086 24.5 1.5 27 136-164 8-34 (77)
No 1
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=99.62 E-value=2.3e-16 Score=137.94 Aligned_cols=139 Identities=18% Similarity=0.258 Sum_probs=116.6
Q ss_pred CCCCCC-CCCCCChHHhhCcc----CCCc-eeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhcccccccc
Q 044009 2 HHNMIN-ENGFKDWKDLWQPK----LAGR-ISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNR 74 (172)
Q Consensus 2 ntd~V~-~~pptSWsDLfDPe----~KGk-IaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~ 74 (172)
|+++|+ ..+++||++||||+ ++|+ +.++|++++++++++.++|.++|+.+++ +++|+++|.++|| +..+|++
T Consensus 144 n~~~~~~~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~~~~~~~~~a~~~L~~~kp-~~~~~~~ 222 (363)
T COG0687 144 NTDKVKDAPPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPEDLKKAFDLLDKLKP-VNVYWFD 222 (363)
T ss_pred eccccCCCCCCccHHHHhCchhhHHHhCCceEEecChHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhCc-ccEEEec
Confidence 788887 24679999999997 8998 9999999999999999999999999988 6999999999999 6667788
Q ss_pred CCcccc-CCCC--CCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 75 SDSPSR-LSYP--TPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 75 SD~~~~-L~~~--~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
++...+ |.++ .++..|||+-..++. +...-+-.++.|.||+-..+|++.||..+.|..-+|. +|++-
T Consensus 223 ~~~~~~~l~~Gev~~a~~w~g~~~~~~~-------~~~~~~i~~~~p~eG~~~w~D~~~ipk~a~n~~~A~~fInf~~ 293 (363)
T COG0687 223 GSQYVQLLANGEVVLAMGWSGDAAAAKA-------AKNGAPIEFVIPKEGSILWFDNLAIPKGAKNVDAAYKFINFLL 293 (363)
T ss_pred chHHHHHHhcCCEEEEEEeChHHHHHHH-------hhcCCceEEEcCCCCceeeeEeeeeeCCCCCHHHHHHHHHHhh
Confidence 877665 4444 445556666555543 4566667899999999999999999999999999999 88754
No 2
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=99.48 E-value=2.3e-14 Score=123.48 Aligned_cols=137 Identities=17% Similarity=0.219 Sum_probs=108.0
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-cc
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-PS 79 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~~ 79 (172)
|+++|++.+|+||.|||||+|+|+|+|.|++.+++++++.++|++.++.+++ ++++.+.|+++++++..|+ .+. ..
T Consensus 139 N~d~v~~~~~~sw~dL~~p~~~g~i~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~a~~~l~~l~~~v~~~~--~~~~~~ 216 (348)
T PRK09501 139 NSDAIDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFN--SDNPAN 216 (348)
T ss_pred cHHHcCCCCCCCHHHHhCHHHcCCeEEeCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhhhhhEEEc--CcHHHH
Confidence 7888874578999999999999999999999999999999999999988887 6889999999999999843 333 23
Q ss_pred cCCCCCC--cceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccccc
Q 044009 80 RLSYPTP--HLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSHK 149 (172)
Q Consensus 80 ~L~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 149 (172)
.+.++.. +..|+++...++ . +--+..+++|.||+...++++-||....+..-+|. ++|+..
T Consensus 217 ~l~~Gev~i~~~w~~~~~~~~--------~-~g~~i~~~~P~eG~~~~~~~~~i~k~a~n~e~A~~Fi~~lls 280 (348)
T PRK09501 217 PYMEGEVNLGMIWNGSAFVAR--------Q-AGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLR 280 (348)
T ss_pred HHHcCCEEEEEeehHHHHHHH--------h-cCCCceEEecCCCcceEEEeeeEECCCCCHHHHHHHHHHHhC
Confidence 3555554 444555543221 1 12345677899999888999999999999999999 888864
No 3
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=99.25 E-value=5e-12 Score=109.79 Aligned_cols=144 Identities=14% Similarity=0.209 Sum_probs=105.6
Q ss_pred CCCCCCC-----CCCCChHHhhCccCCCc-----eeeecChhHHHHHHHHHcCCCCCCCCHH-H-HHHHHHHHHhhhccc
Q 044009 2 HHNMINE-----NGFKDWKDLWQPKLAGR-----ISMVNSPREVIGTVLKYMGVSYNSNDIG-R-IAVQQNLALLGNQYL 69 (172)
Q Consensus 2 ntd~V~~-----~pptSWsDLfDPe~KGk-----IaMlDd~rDv~g~ALl~LG~s~NT~D~e-l-~kA~a~L~eLkpnVr 69 (172)
|+++++. .||+||++||||+++|+ |++++++.++++.++.++|.++++.+++ + +++.+.|++++++|+
T Consensus 143 N~~~~~~~~G~~~pp~sW~dl~~p~~~~~l~~~g~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~a~~~l~~l~~~v~ 222 (370)
T PRK10682 143 NVDKVKAVLGEDAPVDSWDLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIR 222 (370)
T ss_pred ehHHhcccccCCCCCCCHHHHhCchhhhhhcCCeEEEeCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhchhhE
Confidence 6677652 25799999999976654 8999999999999999999999988876 4 589999999999987
Q ss_pred cccccCCccccCCCCCCc--ceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccc
Q 044009 70 PDLNRSDSPSRLSYPTPH--LRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSW 146 (172)
Q Consensus 70 ~y~f~SD~~~~L~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 146 (172)
.|+ +++....+..+..+ ..++++...++.- ....++-.+..+++|.||+....+++.||....+..-+|. ++|
T Consensus 223 ~~~-~~~~~~~l~~Gev~~~~~w~~~~~~~~~~---~~~~~~~~~i~~v~P~eG~~~~~d~~~I~k~a~~~e~A~~Fi~f 298 (370)
T PRK10682 223 YFH-SSQYINDLANGDICVAIGWAGDVWQASNR---AKEAKNGVNVSYSIPKEGALAFFDVFAMPADAKNKDEAYQFLNY 298 (370)
T ss_pred EEc-CcHHHHHHhcCCEEEEEeecHHHHHHHHH---HHhcccCCceEEEECCCcchhheeeeEEECCCCCHHHHHHHHHH
Confidence 633 22222334445443 4445554433211 0011234566788999999999999999999999999999 888
Q ss_pred ccc
Q 044009 147 SHK 149 (172)
Q Consensus 147 ~~~ 149 (172)
+-.
T Consensus 299 ~ls 301 (370)
T PRK10682 299 LLR 301 (370)
T ss_pred HhC
Confidence 863
No 4
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A ....
Probab=98.78 E-value=4.7e-10 Score=91.29 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=89.1
Q ss_pred CCCCCCCCC-CCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCCcccc
Q 044009 2 HHNMINENG-FKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSR 80 (172)
Q Consensus 2 ntd~V~~~p-ptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD~~~~ 80 (172)
|+++++..+ |+||+|||||+|+|+|+|.+...+.....+..+.. ....+++.+.|++++.+...++ .++....
T Consensus 62 N~~~~~~~~~P~sw~dL~~p~~~g~i~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~l~~l~~n~~~~~-~~~~~~~ 135 (242)
T PF13343_consen 62 NTDKLKERDLPTSWADLLDPKYKGKIALPDPNSDTGLAFLLALAE-----AYGEDAGWEWLRELKANGATFS-SSQAAQA 135 (242)
T ss_dssp ETTTSSSGGTTSSGGGGGSGGGTTTEEEETTTSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCBSSSC-HHHHHHH
T ss_pred EhhhcCCCCCCccHHHHHHHHhCCCEEECCccHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHhhccccc-chhhhhH
Confidence 788887322 69999999999999999999654444444443333 1114678999999999998855 3334444
Q ss_pred CCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccccc
Q 044009 81 LSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSHK 149 (172)
Q Consensus 81 L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 149 (172)
+..+..++.++..-..-.. .+.+.. +..+++|.+|+....+...++....+-.-+|. ++|+..
T Consensus 136 ~~~Ge~~~~i~~~~~~~~~-----~~~~~~-~i~~v~P~eG~~~~~~~~~i~k~a~~~~~A~~fi~~lls 199 (242)
T PF13343_consen 136 VASGEGAVAIGISWYSRAA-----QAKEKG-PIKFVYPEEGTVVWPDGIAIVKGAPNPEAAKKFINFLLS 199 (242)
T ss_dssp HHTTSCSEEEEEHHHHHHH-----HHCTTT-TEEEE-TTTGBEEEEEEEEEBTT-STHHHHHHHHHHHTS
T ss_pred hhCCCceEEEEEehHHHHH-----HhhhcC-CeEEEecCCCcEEEEEEEEEeCCCCCHHHHHHHHHHHCC
Confidence 6666644444333221111 111112 67899999999888888888888877777777 777643
No 5
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=98.69 E-value=5e-09 Score=91.65 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHH-----HHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCC
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTV-----LKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSD 76 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~A-----Ll~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD 76 (172)
|+++++ ++|+||+|||||+|+|||+|.|......+.+ +...|. .+ ++.+.|+++++|+..|+-+++
T Consensus 146 N~d~~~-~~P~sw~DL~~p~~~Gki~~~~p~~s~~~~~~l~~~~~~~G~----~d----~a~~~l~~l~~n~~~~~~~~~ 216 (367)
T TIGR03227 146 NPKLLK-SAPASFADLLDADFKGKLAYSNPAQAADGMAVIILAFALFGS----ED----AAFAYLAKLEANNKFHSAGTG 216 (367)
T ss_pred chhhcC-CCCCCHHHHhChhccCCEeecCCCcCccHHHHHHHHHHHcCC----ch----HHHHHHHHHHhcCCccCCCch
Confidence 788887 6889999999999999999988543322222 222332 12 588999999999877433322
Q ss_pred cccc-CCCCCCcceeCCchH-HHHHHHhhhhhhhccccccccchhhhHHHh------hhhccCCcccccccCccc-cccc
Q 044009 77 SPSR-LSYPTPHLRVSDKQC-SIKAIRLSRSRIDQRLTMTDNLSVSITSSL------FNSLLLPPTLSRIRSPYM-LSWS 147 (172)
Q Consensus 77 ~~~~-L~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~ 147 (172)
.... +..+..++. ++... .+.. ...+-.+..+++|.++.-.- -+.+-|+....|...++. ++|+
T Consensus 217 ~~~~~~~~Gev~i~-~g~~~~~~~~------~~~~g~~i~~~~P~~g~g~~~~~~~~~~~~~I~k~a~n~e~A~~Fidfl 289 (367)
T TIGR03227 217 KLNALLNKGEIAVA-NGDLQMDLAD------AEHGGLNIKIFFPAADAGEPPSAFAIPYAIGLVKGAPNQDAGKKLIDFL 289 (367)
T ss_pred hHHHHHhcCceEEE-ccHHHHHHHH------HHhcCCCeEEEeecCCCCCCCcccccceeEEEecCCCCHHHHHHHHHHH
Confidence 3222 333433332 12111 1111 11123455666777653222 223344466777777777 7776
Q ss_pred cc
Q 044009 148 HK 149 (172)
Q Consensus 148 ~~ 149 (172)
-.
T Consensus 290 ls 291 (367)
T TIGR03227 290 LS 291 (367)
T ss_pred cC
Confidence 53
No 6
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.44 E-value=5.4e-08 Score=83.42 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=76.8
Q ss_pred CCCCCCC---CCCCChHHhhCccCCCceeeecChhHHHH-----HHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccc
Q 044009 2 HHNMINE---NGFKDWKDLWQPKLAGRISMVNSPREVIG-----TVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLN 73 (172)
Q Consensus 2 ntd~V~~---~pptSWsDLfDPe~KGkIaMlDd~rDv~g-----~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f 73 (172)
|++.++. .+|+||+|||||+|+|||+|.|-...-.+ ..+...|. +++.+.|+++++|+..|+-
T Consensus 131 N~~~~~~~g~~~P~sw~dL~~p~~~g~i~~~dp~~s~~~~~~~~~~~~~~G~---------~~~~~~l~~l~~n~~~~~~ 201 (334)
T TIGR03261 131 NTVEAKKKGLPKPTSWEDLTKPEYKGHIVMPNPASSGTGFLDVSAWLQMMGE---------DKGWDYMDKLHKNIAVYTH 201 (334)
T ss_pred ehHHHHhcCCCCCCChHHhcCHHhcCCEecCCCccchHHHHHHHHHHHHhCh---------HHHHHHHHHHHhccCccCC
Confidence 5555532 25899999999999999999974322211 22223332 2688899999999988664
Q ss_pred cCCccc-cCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccc
Q 044009 74 RSDSPS-RLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWS 147 (172)
Q Consensus 74 ~SD~~~-~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (172)
+++... .+..+...++++-+..++.... +-.+..+++|.+|+....+..-|+....+-..++. ++|+
T Consensus 202 s~~~~~~~v~~Ge~~i~~~~~~~~~~~~~-------~g~~v~~~~P~eG~~~~~~~~ai~k~a~~~e~A~~fidfl 270 (334)
T TIGR03261 202 SGSKPCKLAGMGEFPIGISMAYRALKEKK-------KGAPIDVVFPKEGLGWDIEATAIIKGSKNNDAAKKLVDWS 270 (334)
T ss_pred CChHHHHHHhCCCceEEEEecHHHHHHHh-------CCCCeEEEecCCCCeeeeeeeEEEcCCCCHHHHHHHHHHH
Confidence 433333 3445555444433333333222 22345567777766555566666666655555555 5554
No 7
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).
Probab=98.26 E-value=1.4e-07 Score=79.73 Aligned_cols=135 Identities=9% Similarity=-0.056 Sum_probs=77.9
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccc-cccCCcccc
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPD-LNRSDSPSR 80 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y-~f~SD~~~~ 80 (172)
|++.++ .+|+||+||++|+++|||+|.+......+.++......... .. ++.+.+++++++...+ ...++....
T Consensus 112 n~~~~~-~~P~sw~dL~~~~~~g~i~~~~p~~~~~~~~~~~~~~~~~g-~~---~~~~~~~~L~~~~~~~~~~~~~~~~~ 186 (304)
T TIGR01254 112 DKNKLQ-NPPQSLKELVEPEQDLLVIYQDPRTSSPGLGLLLWMQSVYG-ED---DAPQAWKQLRKKTVTVTKGWSEAYGT 186 (304)
T ss_pred chHHhc-CCCCCHHHHhCHHhcCcEEecCCCCChhHHHHHHHHHHhcC-hH---HHHHHHHHHHhCCeecCCCCHHHHHH
Confidence 778887 67899999999999999999886556666665443333221 12 3445555555442221 122333334
Q ss_pred CCCCCCcc--eeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 81 LSYPTPHL--RVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 81 L~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
+..+..++ .|+++... +.+. ++-.+..++++.+|+-...+.+-||....+...+|. ++|+-
T Consensus 187 ~~~Ge~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~g~~~~~~~~ai~k~a~n~e~A~~fi~fll 250 (304)
T TIGR01254 187 FLGGEYDLVLSYATSPAY-HVLF------EKKDNYAALNFSEGHYLQVEGAARLKGAKQPELADKFVQFLL 250 (304)
T ss_pred HhcCCccEEEEeccchhh-hhhh------ccCCceeEEecCCCCEEEEEEEEEECCCCCHHHHHHHHHHHc
Confidence 55555444 45544311 1111 111234455666666555677778887777777777 66654
No 8
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein. This model finds the thiamine (and thiamine pyrophosphate) ABC transporter periplasmic binding protein ThiB in proteobacteria. Completed genomes having this protein (E. coli, Vibrio cholera, Haemophilus influenzae) also have the permease ThiP, described by TIGRFAMs equivalog model TIGR01253.
Probab=98.23 E-value=2.5e-07 Score=78.15 Aligned_cols=135 Identities=10% Similarity=-0.084 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCCccccC
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPSRL 81 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD~~~~L 81 (172)
|++.++ .+|+||+|||||+++|+|+|.|.....++.++...-..... ++..++.++|.+.+..+.. ..++....+
T Consensus 112 n~~~~~-~~P~sw~DL~~~~~~g~i~~~~p~~s~~g~~~~~~~~~~~g--~~~~~~~~~L~~~~~~~~~--~~~~~~~~~ 186 (309)
T TIGR01276 112 DKNKLK-NPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYG--DDAPQAWQKLAKKTVTVTK--GWSEAYGLF 186 (309)
T ss_pred CccccC-CCCCCHHHHhccccCCeEEeeCCCCCcHHHHHHHHHHHHcC--ccHHHHHHHHHHcCceeCC--ChHHHHHHH
Confidence 788886 67899999999999999999886555555443321111110 1122455555544443332 233333345
Q ss_pred CCCCCcce--eCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 82 SYPTPHLR--VSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 82 ~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
..+..+++ |+++........ ... +....++.||+-...+.+-||....+..-++. ++|+-
T Consensus 187 ~~Ge~~i~i~~~~~~~~~~~~~-----~~~--~~~~~~~~eG~~~~~~~~ai~k~a~n~e~A~~Fidfll 249 (309)
T TIGR01276 187 LKGESDLVLSYTTSPAYHILEE-----KKD--NYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFLV 249 (309)
T ss_pred HcCCcCEEEecCCcHHHHhhcc-----cCc--ccceEecCCCCEeEEEEEEEeCCCCCHHHHHHHHHHHc
Confidence 44544444 555543211110 111 12234556776666677777777777777777 67764
No 9
>PRK11622 hypothetical protein; Provisional
Probab=97.88 E-value=3.2e-06 Score=75.13 Aligned_cols=140 Identities=11% Similarity=-0.006 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCChHHhhC--ccCCCceeeecCh---hHHHHH-HHHHc-CCCC---CCCCH----H-HHHHHHHHHHhhh
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLAGRISMVNSP---REVIGT-VLKYM-GVSY---NSNDI----G-RIAVQQNLALLGN 66 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~KGkIaMlDd~---rDv~g~-ALl~L-G~s~---NT~D~----e-l~kA~a~L~eLkp 66 (172)
|+++++ .+|+||++||+ ++++|||++.+.+ ...+.. ++... |... ...++ + .+++.+.|+++++
T Consensus 164 N~d~~~-~~P~Sw~dL~~~~~~~~Gk~~~~~p~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 242 (401)
T PRK11622 164 DSARTP-QPPQSPAELLEWAKANPGRFTYPRPPDFTGTAFLKQLLYELTGDPAALKQPVDKATFARVTAPLWDYLDELHP 242 (401)
T ss_pred chHhcC-CCCCCHHHHHHHHHHCCCcEecCCCCCCchhHHHHHHHHHhcCChHhhcCCCCHHHHHHhhhHHHHHHHHhCH
Confidence 888997 78999999998 7999999997532 222222 22222 3321 01122 1 2578899999999
Q ss_pred cc----ccccccCCc-cccCCCCCCcce--eCCchHHHHHHHhhhhhhhccccc--cccchhhhHHHhhhhccCCccccc
Q 044009 67 QY----LPDLNRSDS-PSRLSYPTPHLR--VSDKQCSIKAIRLSRSRIDQRLTM--TDNLSVSITSSLFNSLLLPPTLSR 137 (172)
Q Consensus 67 nV----r~y~f~SD~-~~~L~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 137 (172)
++ +.|.-+... ...+..+..++. |++... ...+-.| .++- -..++.+|+-..++.+-||....+
T Consensus 243 ~~~~~g~~~~~~~~~~~~~~~~GEv~~~~~~~~~~~-~~~~~~g------~~p~~~~~~~~~~G~~~~~~~~~Ipk~a~n 315 (401)
T PRK11622 243 YLWREGKTFPASPAELDQLLADGELDLAMTFNPNHA-QSKIANG------ELPASTRSFVFDDGTIGNTHFVAIPFNANA 315 (401)
T ss_pred HHHhccccCCCChHHHHHHHHCCCeEEEEecChHHH-HHHHhcC------CCCCceeEEcCCCCeeccceeEEeeCCCCC
Confidence 87 342222111 223444444433 443322 1112111 2222 234566888888999999999999
Q ss_pred ccCccc-cccccc
Q 044009 138 IRSPYM-LSWSHK 149 (172)
Q Consensus 138 ~~~~~~-~~~~~~ 149 (172)
...++. ++|+-.
T Consensus 316 ~~~A~~finfllS 328 (401)
T PRK11622 316 KAGAKVVANFLLS 328 (401)
T ss_pred HHHHHHHHHHHcC
Confidence 999998 888753
No 10
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=97.83 E-value=3.7e-06 Score=72.00 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecCh
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSP 32 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~ 32 (172)
|+++++ .+|+||+|||+|+|+|||+|.|..
T Consensus 133 n~~~~~-~~P~sw~DL~~~~~~g~i~~~dp~ 162 (330)
T PRK11205 133 DKEKLK-NPPKSLKELVESDQNWKVIYQDPR 162 (330)
T ss_pred cccccC-CCCCCHHHHhChhhcCCEEecCCC
Confidence 788887 678999999999999999998743
No 11
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional
Probab=97.67 E-value=2.4e-05 Score=67.82 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhH-----HHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhcccc
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPRE-----VIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLP 70 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rD-----v~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~ 70 (172)
|+++++ .+|+||.|||+|+|+|+|++.+.... ++...+...| . +++.+.|+++++++..
T Consensus 141 n~~~~~-~~P~sw~dL~~~~~~gki~~~~p~~s~~g~~~~~~~~~~~G-----~----~~a~~~l~~l~~~~~~ 204 (349)
T PRK15046 141 NPKVLK-TAPATWADLLDPKFKGKLQYSTPGQAGDGTAVLLLTFHLMG-----K----DKAFDYLAKLQANNVG 204 (349)
T ss_pred chhhcc-CCCCCHHHHhCHHhCCCEEecCCCcCccHHHHHHHHHHHhC-----c----hHHHHHHHHHHHhCCC
Confidence 788887 68899999999999999999764322 2222222233 1 2578889999999876
No 12
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0029 Score=54.14 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCCChHHhhCccCCCceeeecChh-HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCCccc--cCCCCCC
Q 044009 10 GFKDWKDLWQPKLAGRISMVNSPR-EVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPS--RLSYPTP 86 (172)
Q Consensus 10 pptSWsDLfDPe~KGkIaMlDd~r-Dv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD~~~--~L~~~~~ 86 (172)
.|++|.||.||+|||+|.|.+... ...-.++..+ ....+ +++.+.|+.++.|+..+.+.++... .+..+..
T Consensus 103 ~P~~w~DL~~p~~kg~i~~~~p~~s~~~~~~~~~~----~~~G~--~~~~~~l~~l~~n~~~~~~~~~~~~~~~va~Ge~ 176 (299)
T COG1840 103 VPKSWADLAKPEYKGKVQMADPTSSGTAYAALLAL----QAYGE--EKGWAYLKGLAANLATYTGGSSSVVAKVVAGGEA 176 (299)
T ss_pred CCCCHHHhcCHhhcCCccccCCcccHHHHHHHHHH----HhcCh--HHHHHHHHHHHHhcccccCCCcHHHHHHhhcCCc
Confidence 479999999999999997777332 2222233322 00112 3688889999999887555444333 3556777
Q ss_pred cceeCCchH
Q 044009 87 HLRVSDKQC 95 (172)
Q Consensus 87 ~~~~s~~~~ 95 (172)
++++....+
T Consensus 177 ~vg~~~~~~ 185 (299)
T COG1840 177 AVGLGNLYY 185 (299)
T ss_pred eEEEEeecc
Confidence 766666654
No 13
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A ....
Probab=96.57 E-value=0.001 Score=54.09 Aligned_cols=96 Identities=13% Similarity=0.139 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCChHHhhC--ccCCCceeeecChhHHHHHHHHHcCCCCCCC--CHHHHHHHHHHHHhhhccccccccCCc
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLAGRISMVNSPREVIGTVLKYMGVSYNSN--DIGRIAVQQNLALLGNQYLPDLNRSDS 77 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~--D~el~kA~a~L~eLkpnVr~y~f~SD~ 77 (172)
|++.+++.+|++|++|++ ++++|++++.+...+....++.+.|...+.. +++..++.+.++++.++...+....+.
T Consensus 100 n~d~~~~~~p~t~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 179 (281)
T PF13416_consen 100 NKDLLKKAPPKTWDELLEVAKKLKGKYGFPDPASGWMQWALIAGGKSFDDDGTSENFVEALEFLKELYDNGYFYGSGDDA 179 (281)
T ss_dssp ETTTHSHSGTSSHHHHHHHHHHHTTHEEEESCHHHHHHHHHHHTTSECTEETTSHHHHHHHHHHHHHHHTTSEETSHHHH
T ss_pred chhhcccCCcccHHHHhhhHHHhcccccccccchhHhhhhhhccCCchhcccCCHHHHHHHHHHHHHHHhcccccchhHH
Confidence 678887447899999999 8999999999887776666666767666443 444678999999999887643211123
Q ss_pred cccCCCCCCcceeCCchHHH
Q 044009 78 PSRLSYPTPHLRVSDKQCSI 97 (172)
Q Consensus 78 ~~~L~~~~~~~~~s~~~~~~ 97 (172)
...+.++..+..+.+...+.
T Consensus 180 ~~~f~~G~~~~~~~~~~~~~ 199 (281)
T PF13416_consen 180 RQLFASGKVAMIIGGSWSIS 199 (281)
T ss_dssp HHHHHTTSESEEEEEGHHHH
T ss_pred HHHhcCCCeeeecccHhHHH
Confidence 33455666666666555543
No 14
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein. This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein.
Probab=94.11 E-value=0.096 Score=45.77 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=48.9
Q ss_pred CCCChHHhhCccCCCceeeecChhHHHHHHHHHc---CCCCCCCCHHHHHHHHHHHHhhhccccccccCC-cccc-C--C
Q 044009 10 GFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYM---GVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSD-SPSR-L--S 82 (172)
Q Consensus 10 pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~L---G~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD-~~~~-L--~ 82 (172)
.++||+||++|++ +|+|- +|..+-..++.++ |........+.+++.+.|.++.+|++.|..++. .... + .
T Consensus 116 ~i~sw~dL~~~~~--kiai~-dp~~sg~~~~~~L~~~g~~~~~~~g~~~~a~~~l~~l~~nv~~~~~~~~~~~~~~v~~G 192 (315)
T TIGR00971 116 QIHDWNDLIKPGV--SVITP-NPKSSGGARWNYLAAWGYALHHNNGDQAKAQQFVTALLKNVEVLDSGARGATNTFVERG 192 (315)
T ss_pred CCCCHHHHhCCCc--EEEeC-ChhhHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhccccCCCchHHHHHHHHcC
Confidence 4689999999976 57755 4665533333333 443221111134688999999999998443321 1111 2 2
Q ss_pred CCCCcceeCCchHH
Q 044009 83 YPTPHLRVSDKQCS 96 (172)
Q Consensus 83 ~~~~~~~~s~~~~~ 96 (172)
+.+..+.|+++...
T Consensus 193 e~dagivy~sda~~ 206 (315)
T TIGR00971 193 IGDVLIAWENEALL 206 (315)
T ss_pred ceeEEEEEcHHHHH
Confidence 44666677777543
No 15
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=92.31 E-value=0.078 Score=48.00 Aligned_cols=61 Identities=23% Similarity=0.289 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhc
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQ 67 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpn 67 (172)
|+++++ +||+|.+||-.|+|+|+|.+-|-....-|.+++.--.+.-..| ++.+..++|+.+
T Consensus 137 d~~~~~-~ppksL~dL~~~~y~~~ii~qdPrtSspGl~fLlW~~svyg~d----~~~~~W~kL~~~ 197 (336)
T COG4143 137 DKTKLK-NPPKSLKDLVEPEYAGKIIYQDPRTSSPGLGFLLWTISVYGED----GAPEAWAKLADN 197 (336)
T ss_pred chHHhc-CCcccHHHhcCccccCcEEecCCCCCCccHHHHHHHHHHhccc----cHHHHHHHHHhC
Confidence 678888 7889999999999999999998666677777776555544333 355666666666
No 16
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=82.65 E-value=2.5 Score=37.69 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=42.8
Q ss_pred CCCChHHhhCccCCCceeeecChhHHHH-H-HHHHcCC--CCCCCCHHHHHHHHHHHHhhhccccccccC-Cccc-cC--
Q 044009 10 GFKDWKDLWQPKLAGRISMVNSPREVIG-T-VLKYMGV--SYNSNDIGRIAVQQNLALLGNQYLPDLNRS-DSPS-RL-- 81 (172)
Q Consensus 10 pptSWsDLfDPe~KGkIaMlDd~rDv~g-~-ALl~LG~--s~NT~D~el~kA~a~L~eLkpnVr~y~f~S-D~~~-~L-- 81 (172)
.|++|+||++|++ +|.|.|-..--.| . .|...|. .....+++ ++.+.++++.+|+..+..++ .... .+
T Consensus 133 ~i~sw~DL~~~~~--kI~i~nP~tSg~g~~~~La~~~~~~~~~G~d~~--~a~~~l~~l~~Nv~v~~~~~~~a~~~~v~~ 208 (338)
T PRK10852 133 NIHDWNDLVRSDV--KLIFPNPKTSGNARYTYLAAWGAADKADGGDKA--KTEQFMTQFLKNVEVFDTGGRGATTTFAER 208 (338)
T ss_pred CCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHhcCCEecCCCcHHHHHHHHc
Confidence 5789999999985 6998872111111 0 0111111 01112332 58889999999998733222 1211 12
Q ss_pred CCCCCcceeCCch
Q 044009 82 SYPTPHLRVSDKQ 94 (172)
Q Consensus 82 ~~~~~~~~~s~~~ 94 (172)
.+.+..+.|..+-
T Consensus 209 Ge~Dvgi~yesda 221 (338)
T PRK10852 209 GLGDVLISFESEV 221 (338)
T ss_pred CCccEEEEechHH
Confidence 3445556666553
No 17
>PRK10752 sulfate transporter subunit; Provisional
Probab=76.55 E-value=3.9 Score=36.41 Aligned_cols=57 Identities=23% Similarity=0.245 Sum_probs=33.1
Q ss_pred CCCChHHhhCccCCCceeeecChh--HHHHHHHHHcCC--CCCCCCHHHHHHHHHHHHhhhcccc
Q 044009 10 GFKDWKDLWQPKLAGRISMVNSPR--EVIGTVLKYMGV--SYNSNDIGRIAVQQNLALLGNQYLP 70 (172)
Q Consensus 10 pptSWsDLfDPe~KGkIaMlDd~r--Dv~g~ALl~LG~--s~NT~D~el~kA~a~L~eLkpnVr~ 70 (172)
.|++|+||++|++ +|+|.|-.. ......|..++. .-...++ +++.+.++++.+|+..
T Consensus 127 ~i~~w~DL~~~~~--~I~i~dP~tSGta~~~~laa~~~~l~~~~g~~--~~a~~~l~kL~~Nv~~ 187 (329)
T PRK10752 127 QIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNNDQ--AKAQDFVKALYKNVEV 187 (329)
T ss_pred CCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHHHHHhccCCCH--HHHHHHHHHHHhcCCc
Confidence 4689999999976 798887221 111011111111 0001122 2688999999999986
No 18
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=44.44 E-value=16 Score=28.93 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=17.2
Q ss_pred CCCChHHhhCccC-CCceeeecC
Q 044009 10 GFKDWKDLWQPKL-AGRISMVNS 31 (172)
Q Consensus 10 pptSWsDLfDPe~-KGkIaMlDd 31 (172)
.|+||+||. |.+ +|+|+|.|-
T Consensus 85 ~~~s~~dL~-~~~~~~~i~~~~P 106 (216)
T TIGR01256 85 VVDDLDILK-KWVADKRVAIGDP 106 (216)
T ss_pred CcCcHHHHh-hcccCCeEEecCC
Confidence 368999997 767 799999873
No 19
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=32.64 E-value=61 Score=25.81 Aligned_cols=21 Identities=43% Similarity=0.901 Sum_probs=15.4
Q ss_pred CCCCChHHhhCccCCCceeeecC
Q 044009 9 NGFKDWKDLWQPKLAGRISMVNS 31 (172)
Q Consensus 9 ~pptSWsDLfDPe~KGkIaMlDd 31 (172)
..+.+|.||.+|++ +|+|.|-
T Consensus 91 ~~~~~~~dL~~~~~--~i~~~dP 111 (230)
T PF13531_consen 91 KGIRSWADLAQPGL--RIAIPDP 111 (230)
T ss_dssp TSTTCHHHHCSTT----EEEE-T
T ss_pred cccCCHHHHhhccC--EEEecCc
Confidence 35789999999987 8999983
No 20
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=27.08 E-value=40 Score=24.50 Aligned_cols=27 Identities=33% Similarity=0.709 Sum_probs=22.8
Q ss_pred ccccCcccccccccCCCCCCCCCCCccee
Q 044009 136 SRIRSPYMLSWSHKAPSHSSCQPTRPIAL 164 (172)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (172)
.+.|-||.-.|.++ ++..+.|.+|++-
T Consensus 8 e~~RPpY~GT~~k~--~s~~v~~r~P~~~ 34 (77)
T PF12253_consen 8 ENVRPPYYGTWTKK--SSKIVTPRNPFAK 34 (77)
T ss_pred CCCCCCEeeEEccC--cccccccCCcccc
Confidence 67899999999996 6778889998863
Done!