Query 044009
Match_columns 172
No_of_seqs 131 out of 1153
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 18:19:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gl0_A LMO0810 protein; struct 99.5 4.9E-14 1.7E-18 116.8 5.5 139 2-149 122-263 (333)
2 4eqb_A Spermidine/putrescine A 99.3 2E-12 7E-17 106.4 3.7 135 2-148 120-259 (330)
3 1pot_A POTD, spermidine/putres 98.9 4.6E-10 1.6E-14 91.9 4.6 135 2-147 116-255 (325)
4 4i1d_A ABC transporter substra 98.9 1E-10 3.4E-15 95.6 0.3 138 2-148 112-253 (324)
5 3ttm_A Polyamine transport pro 98.9 7.2E-11 2.4E-15 97.3 -0.9 134 10-148 134-277 (346)
6 4euo_A ABC transporter, substr 98.9 2.5E-10 8.6E-15 93.8 0.1 135 2-148 108-248 (320)
7 3rpw_A ABC transporter; struct 98.8 1.4E-09 4.7E-14 90.5 3.4 138 2-148 146-288 (365)
8 3ttn_A Polyamine transport pro 98.7 5.4E-10 1.9E-14 91.3 -1.6 134 10-148 130-273 (340)
9 2v84_A Spermidine/putrescine A 98.5 3.3E-08 1.1E-12 82.1 3.2 137 2-147 137-279 (343)
10 3pu5_A Extracellular solute-bi 98.3 1.1E-07 3.8E-12 77.7 -0.0 134 2-148 118-263 (333)
11 1a99_A POTF, putrescine-bindin 98.2 7.2E-08 2.4E-12 79.2 -2.8 136 10-148 130-274 (344)
12 3e13_X Putative iron-uptake AB 97.7 8.6E-06 2.9E-10 65.5 0.7 137 2-148 109-258 (322)
13 4edp_A ABC transporter, substr 97.5 9.3E-06 3.2E-10 65.7 -0.5 136 2-148 146-287 (351)
14 2qry_A Thiamine-binding peripl 96.8 0.00028 9.7E-09 57.9 1.3 63 2-70 133-195 (330)
15 3c9h_A ABC transporter, substr 96.7 5.4E-05 1.9E-09 62.8 -3.9 134 2-147 142-284 (355)
16 2voz_A FUTA2, periplasmic iron 96.1 0.0079 2.7E-07 48.9 5.6 87 2-93 136-224 (346)
17 1xvx_A YFUA; periplasmic iron 95.9 0.0022 7.6E-08 51.6 1.4 132 2-147 111-252 (312)
18 1q35_A Iron binding protein FB 95.6 0.018 6.2E-07 46.2 5.7 87 2-93 108-197 (320)
19 2pt1_A Iron transport protein; 95.5 0.0071 2.4E-07 49.0 2.9 86 2-92 126-213 (334)
20 1nnf_A Iron-utilization peripl 95.5 0.0078 2.7E-07 48.1 3.0 82 2-93 108-194 (309)
21 1y9u_A Putative iron binding p 93.4 0.14 4.8E-06 41.0 5.8 80 2-93 112-198 (323)
22 2hxw_A Major antigenic peptide 92.9 0.16 5.5E-06 38.9 5.3 70 10-93 94-173 (237)
23 1sbp_A Sulfate-binding protein 90.1 0.44 1.5E-05 37.8 5.3 58 2-70 102-168 (310)
24 2gha_A Maltose ABC transporter 81.7 0.85 2.9E-05 37.6 2.9 65 2-67 116-202 (382)
25 3csg_A MBP, maltose-binding pr 80.5 0.81 2.8E-05 39.2 2.4 64 2-66 116-198 (461)
26 2zxt_A Maltose-binding peripla 77.9 1.3 4.6E-05 38.3 3.0 65 1-66 117-200 (465)
27 1mh3_A Maltose binding-A1 home 77.7 1 3.6E-05 37.5 2.2 64 2-66 118-200 (421)
28 1hsj_A Fusion protein consisti 76.8 1.3 4.3E-05 38.2 2.5 64 2-66 118-200 (487)
29 2zyo_A Solute-binding protein; 76.3 1.9 6.4E-05 35.6 3.4 64 2-66 136-220 (397)
30 2vgq_A Maltose-binding peripla 74.5 1.4 4.8E-05 38.1 2.2 64 2-66 133-215 (477)
31 2xz3_A Maltose ABC transporter 72.3 1.4 4.7E-05 38.3 1.6 64 2-66 119-201 (463)
32 3cg1_A UPF0100 protein PF0080; 70.7 2.4 8.2E-05 33.9 2.6 26 10-37 109-135 (296)
33 1r6z_P Chimera of maltose-bind 69.3 2.1 7.3E-05 37.3 2.2 64 2-66 119-201 (509)
34 2gh9_A Maltose/maltodextrin-bi 67.9 5.9 0.0002 32.5 4.5 32 2-34 120-155 (386)
35 1urs_A Maltose-binding protein 65.7 2 6.7E-05 35.6 1.2 62 2-66 148-224 (402)
36 1y4c_A Maltose binding protein 64.6 3 0.0001 37.0 2.2 64 2-66 118-200 (494)
37 3cij_A UPF0100 protein AF_0094 62.3 9.1 0.00031 30.6 4.5 26 10-37 102-128 (295)
38 2xd3_A MALX, maltose/maltodext 61.6 7.4 0.00025 32.3 4.0 63 2-65 148-233 (416)
39 3iot_A Maltose-binding protein 60.6 7.9 0.00027 32.8 4.0 65 2-67 118-201 (449)
40 3cfx_A UPF0100 protein MA_0280 59.7 11 0.00036 30.3 4.5 26 10-37 102-128 (296)
41 3ob4_A Conglutin, maltose ABC 57.1 6.3 0.00022 34.4 2.9 65 2-67 118-201 (500)
42 3py7_A Maltose-binding peripla 53.8 9.5 0.00032 33.3 3.5 65 2-67 119-202 (523)
43 1elj_A Maltodextrin-binding pr 53.7 27 0.00092 28.4 6.1 17 2-19 123-139 (381)
44 3cfz_A UPF0100 protein MJ1186; 53.3 15 0.00052 29.3 4.4 26 10-37 102-128 (292)
45 3o3u_N Maltose-binding peripla 52.8 10 0.00035 32.6 3.5 65 2-67 118-201 (581)
46 3oai_A Maltose-binding peripla 51.1 9.4 0.00032 32.3 2.9 65 2-67 118-201 (507)
47 3n94_A Fusion protein of malto 50.4 12 0.00041 32.0 3.5 65 2-67 120-203 (475)
48 4hw8_A Bacterial extracellular 46.7 27 0.00093 28.8 5.0 65 2-67 156-241 (420)
49 3f5f_A Maltose-binding peripla 45.1 21 0.0007 32.3 4.4 65 2-67 118-201 (658)
50 1atg_A MODA, periplasmic molyb 44.5 23 0.0008 25.6 3.9 19 12-31 94-112 (231)
51 3osr_A Maltose-binding peripla 44.1 15 0.0005 34.0 3.3 65 2-67 154-237 (653)
52 3h3g_A Fusion protein of malto 41.8 19 0.00065 31.6 3.5 65 2-67 120-203 (539)
53 3thi_A Protein (thiaminase I); 41.2 15 0.0005 29.7 2.5 19 2-20 112-130 (371)
54 3mq9_A Bone marrow stromal ant 40.1 23 0.0008 30.5 3.8 65 2-67 132-215 (471)
55 4hs7_A Bacterial extracellular 39.5 73 0.0025 26.1 6.6 35 2-37 156-196 (420)
56 3mp6_A MBP, SGF29, maltose-bin 38.3 17 0.00057 31.9 2.6 65 2-67 119-202 (522)
57 3h4z_A Maltose-binding peripla 30.6 33 0.0011 30.7 3.3 65 2-67 118-201 (568)
58 4dxb_A RG13, maltose-binding p 30.1 39 0.0013 30.5 3.7 18 2-20 118-135 (637)
59 4h1g_A Maltose binding protein 28.1 34 0.0012 31.7 2.9 27 2-29 119-149 (715)
60 3k01_A Acarbose/maltose bindin 27.7 33 0.0011 28.1 2.6 59 9-67 158-231 (412)
61 4b3n_A Maltose-binding peripla 26.8 35 0.0012 30.6 2.7 26 2-28 132-161 (602)
62 3uor_A ABC transporter sugar b 23.9 34 0.0012 28.9 2.0 58 9-66 161-235 (458)
63 4exk_A Maltose-binding peripla 20.9 61 0.0021 28.2 3.1 18 2-20 122-139 (487)
64 2nvu_B Maltose binding protein 20.6 62 0.0021 30.1 3.2 26 2-28 122-151 (805)
No 1
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=99.45 E-value=4.9e-14 Score=116.80 Aligned_cols=139 Identities=17% Similarity=0.299 Sum_probs=110.3
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCccc-
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDSPS- 79 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~~~- 79 (172)
|+++|+..+++||++||||+++|+|.|.|.+++.+++++.++|.+.++.+++ +.++.+.+.++++++.. +.++...
T Consensus 122 n~~~~~~~~~~sw~dl~dp~~kg~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 199 (333)
T 4gl0_A 122 NKEMFPDKNFDTWNALFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKA--IVGDEIKL 199 (333)
T ss_dssp ETTTCTTCCTTSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHHGGGEEE--EESTTHHH
T ss_pred chhhcccCCcccHHhhcCHHhhhccccCCcHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhccccce--ecchhhhh
Confidence 7899985678999999999999999999999999999999999999999987 68899999999999887 4444443
Q ss_pred cCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccccc
Q 044009 80 RLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSHK 149 (172)
Q Consensus 80 ~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 149 (172)
.+..+...+++...-.+..++..+ -+..+++|.+|+-..++.+-||..+.|..-+|. ++|+-.
T Consensus 200 ~~~~Ge~~~~~~~~~~~~~~~~~~-------~~~~~~~p~eG~~~~~~~~~I~k~a~n~e~A~~fi~flls 263 (333)
T 4gl0_A 200 LMADNEAGVAVTFSGEAAEMLSEN-------EDLEYVIPKDGSNLWFDNMVIPKTAKNVDGAHKFINFMLK 263 (333)
T ss_dssp HTSCC-CCEEEEEHHHHHHHHHHC-------TTEEEECCSSCEEEEEEEEECBTTCSCHHHHHHHHHHHHS
T ss_pred hhhccchheehhhhHHHHHHHhhc-------cccccccCCCCCccccceEEEEcCCCCHHHHHHHHHHhcC
Confidence 355555444444333344333322 245788999999999999999999999999998 888753
No 2
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=99.26 E-value=2e-12 Score=106.42 Aligned_cols=135 Identities=19% Similarity=0.316 Sum_probs=104.8
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-cc
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-PS 79 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~~ 79 (172)
|++.++ ++|+||++||+++++|+|++.+.+++++++++.+.|.++++.+++ ++++.+.|.++++++.. |+++. ..
T Consensus 120 nkd~~~-~~p~tw~el~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~ 196 (330)
T 4eqb_A 120 NETMVD-EAPEHWDDLWKLEYKNSIMLFDGAREVLGLGLNSLGYSLNSKDPQQLEETVDKLYKLTPNIKA--IVADEMKG 196 (330)
T ss_dssp EGGGCS-SCCCSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHTTGGGEEE--EESTTHHH
T ss_pred EHHHcC-CCCCCHHHHhChHhcCCeEEecCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhHhhe--eCcHHHHH
Confidence 788887 789999999999999999999999999999999999999998887 68999999999999987 44433 33
Q ss_pred cCCCCCCcce--eCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 80 RLSYPTPHLR--VSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 80 ~L~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
.+..+..+.. ++++-..++ .. --...+++|.+++....+.+.||....+..-++. ++|+.
T Consensus 197 ~~~~G~~~~~~~~~~~~~~~~--~~-------~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~ 259 (330)
T 4eqb_A 197 YMIQNNVAIGVTFSGEASQML--EK-------NENLRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFML 259 (330)
T ss_dssp HHHTTCCSEEEEEHHHHHHHH--HH-------CTTEEEECCTTCEEEEEEEEBCBTTCSCHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEechHHHHHHH--hh-------CCCeEEEeCCCccceEEEEEEEECCCCCHHHHHHHHHHhc
Confidence 3555555544 444333222 11 1233567888888888889999999888877887 77764
No 3
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=98.95 E-value=4.6e-10 Score=91.93 Aligned_cols=135 Identities=18% Similarity=0.252 Sum_probs=94.7
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-cc
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-PS 79 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~~ 79 (172)
|++.+++.||++|++|++++++|+|+|.+...+.++.++...|.++++.+++ .+++.+.|+++++++..| .++. ..
T Consensus 116 nkd~~~~~p~~tw~dl~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~ 193 (325)
T 1pot_A 116 NGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAF--NSDNPAN 193 (325)
T ss_dssp ETTTSCTTTCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHTGGGEEEE--CSSCTHH
T ss_pred EHHHcCCCCCCCHHHHcCHHhcCcEEEEcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHhhc--CCchHhH
Confidence 7888874567999999999999999999988899999999999998887766 588999999999998773 3332 22
Q ss_pred cCCCCCCccee--CCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccc
Q 044009 80 RLSYPTPHLRV--SDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWS 147 (172)
Q Consensus 80 ~L~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (172)
.+..+..+..+ ++... ..... .. ...+++|.+++....+.+.||....+..-++. ++|+
T Consensus 194 ~f~~G~~~~~~~~~~~~~--~~~~~-----~~--~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l 255 (325)
T 1pot_A 194 PYMEGEVNLGMIWNGSAF--VARQA-----GT--PIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFL 255 (325)
T ss_dssp HHHTTSCSEEEEEHHHHH--HHHTT-----SC--CEEEECCTTCCEEEEEEEBCBTTCTTHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeecHHHH--HHhhc-----CC--CeEEEECCCcceEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 34455554443 43322 11111 11 22345777776556677888887777666666 6665
No 4
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=98.94 E-value=1e-10 Score=95.59 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=91.8
Q ss_pred CCCCCCCCCCCChHHhhCc-cCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-c
Q 044009 2 HHNMINENGFKDWKDLWQP-KLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-P 78 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP-e~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~ 78 (172)
|++.++..+|+||++||++ +++|+|++.+.+..+++.++.+.|.++++.+++ .+++.+.|.++++++..|+-+++. .
T Consensus 112 n~~~~~~~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 191 (324)
T 4i1d_A 112 SQKTFPKDAPNSWVDFWDVKKFPGRRALRNHPIATLEAALMADGVAPDKLYPLDVDRAFKKLEEIKPHITVWWTSGAQSA 191 (324)
T ss_dssp ETTTCSSCCCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCGGGCCSCCHHHHHHHHHHHGGGCSEEECSHHHHH
T ss_pred ehhhcCCCCCCCHHHHhChhhcCCceeccCCchhHHHHHHHhcCCChhhcCHHHHHHHHHHHHHHhhhhhhhccCcchHH
Confidence 7888874468999999999 999999999988999999999999988766654 678999999999999885433322 2
Q ss_pred ccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 79 SRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 79 ~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
..+..+..+..+.....+......+ .+..+++ +++-...+.+-||....+-.-++. ++|+-
T Consensus 192 ~~~~~Ge~~~~~~~~~~~~~~~~~~-------~~~~~~~--~g~~~~~~~~~i~k~s~~~~~A~~fi~fl~ 253 (324)
T 4i1d_A 192 QLLNDGEVDMEMAWNGRVSAVAKEG-------AKVSFTY--NQGILQSTSLCILKGAPNLETAVKFLNEAV 253 (324)
T ss_dssp HHHHHTSCSEEEEEHHHHHHHHHTT-------CSEEEEE--EEEEEEEEEEEEBTTCTTHHHHHHHHHHHT
T ss_pred HHHhCCCEEEEecccHHHHHHHhcC-------CCeEEEe--cCeeeeccEEEEECCCCCHHHHHHHHHHHh
Confidence 3344454444443333333322211 1222222 344445556667766666555555 55553
No 5
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=98.93 E-value=7.2e-11 Score=97.30 Aligned_cols=134 Identities=15% Similarity=0.254 Sum_probs=97.5
Q ss_pred CCCChHHhhCccCCCc-----eeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-cccCC
Q 044009 10 GFKDWKDLWQPKLAGR-----ISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-PSRLS 82 (172)
Q Consensus 10 pptSWsDLfDPe~KGk-----IaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~~~L~ 82 (172)
+|+||++||+++++|+ +.+++++.+++++++.+.|.++++.+++ ++++.+.|+++++++.. |.++. ...+.
T Consensus 134 ~p~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~~ 211 (346)
T 3ttm_A 134 PVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTY--FHSSKYISDLA 211 (346)
T ss_dssp CTTSTHHHHSHHHHHHHTTTCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHHHHHHHHHHGGGCCE--ECSSTHHHHHH
T ss_pred CCCcHHHHhChhhhccccCCcEEEECCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhHhhhe--eCChhHHHHHh
Confidence 7899999999987665 7899999999999999999999988877 68999999999999988 44432 33344
Q ss_pred CCCCc--ceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 83 YPTPH--LRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 83 ~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
++..+ +.++++-..++. .......-....+++|.+++....+.+.||....+-.-++. ++|+-
T Consensus 212 ~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~~~s~~~~~A~~fi~fl~ 277 (346)
T 3ttm_A 212 NGNICVAIGYSGDIYQAKS---RAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLM 277 (346)
T ss_dssp HTSCSEEEEEHHHHHHHHH---HHHHHTSSCCCEEECCTTCEEEEEEEEECBTTCSCSHHHHHHHHHHT
T ss_pred cCCeEEEEeccHHHHHHHH---hhhhcccCCceEEEEcCCCceEEEEEEEEECCCCCHHHHHHHHHHhc
Confidence 44444 444444332221 00111122344566888888888889999999888888887 78875
No 6
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=98.86 E-value=2.5e-10 Score=93.75 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=92.2
Q ss_pred CCCCCCCCCCCChHHhhCc-cCCCceeeec-ChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccC--C
Q 044009 2 HHNMINENGFKDWKDLWQP-KLAGRISMVN-SPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRS--D 76 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP-e~KGkIaMlD-d~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~S--D 76 (172)
|++.++ ++|+||++||+| +++|+|+|.+ ....+++.++.+.|.++++.+++ .+++.+.|.++++++.. +++ +
T Consensus 108 n~~~~~-~~P~tw~dl~~~~~~~g~i~~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~ 184 (320)
T 4euo_A 108 NVDSVS-ACPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIW--WSGGAQ 184 (320)
T ss_dssp CGGGSS-CCCCSHHHHTCTTTSCSCEEEECSSSTTHHHHHHHHTTCCGGGCCSCCHHHHHHHHHTTGGGEEE--ECSHHH
T ss_pred EhhhhC-CCCCCHHHHhChhhCCCcEEEeCCCchHHHHHHHHHcCCChhhcCHHHHHHHHHHHHHhhhceeE--eCCCch
Confidence 788888 588999999998 5999999999 77889999999999998776654 57899999999999954 433 2
Q ss_pred ccccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 77 SPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 77 ~~~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
....+..+..+..+.....+......+ .+..+++ +++-...+.+-||....+..-++. ++|+-
T Consensus 185 ~~~~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~ 248 (320)
T 4euo_A 185 SQQLIASAEAPFGSVWNGRMTALEQSG-------VKVETSW--AQNITAADSLVVPKGTKNKDAAMKFIALAT 248 (320)
T ss_dssp HHHHHHTTSSCEEEEEHHHHHHHHHTT-------CCCEEEE--EEEEEEEEEEECBTTCSCHHHHHHHHHHHT
T ss_pred HHHHHHcCCEEEEEeecHHHHHHHhCC-------CCeEEEe--cCceeecceEEEECCCCCHHHHHHHHHHHh
Confidence 223355555554444333333222211 1222333 566666677778877777666666 66654
No 7
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=98.83 E-value=1.4e-09 Score=90.47 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=94.5
Q ss_pred CCCCCCC-CCCCChHHhhCc-cCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCcc
Q 044009 2 HHNMINE-NGFKDWKDLWQP-KLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDSP 78 (172)
Q Consensus 2 ntd~V~~-~pptSWsDLfDP-e~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~~ 78 (172)
|++.++. .+|++|+|||++ +++|+|++.+.+.++++.++.+.|.++++.++. .+++.+.|+++++++..|+-+.+..
T Consensus 146 nk~~~~~~~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 225 (365)
T 3rpw_A 146 NKDKFKGDKAPQTWADFWDVKKFPGRRCMPAWPRFTFEAALMADGVTKDKLYPIDMDRALKKLKEIKPHVVKWWTTAAQP 225 (365)
T ss_dssp ETTTSCTTSSCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCTTSCCSCCHHHHHHHHHHHGGGEEEEECSTTHH
T ss_pred EhhhcCCCCCCCCHHHHhChhhCCCceeCCcCchHHHHHHHHHcCCChhhcCchhHHHHHHHHHHHhhhcccccCCccHH
Confidence 7888873 278999999999 899999999998999999999999998776654 6789999999999998755444333
Q ss_pred -ccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 79 -SRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 79 -~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
..+..+..+..+.....+......+ .+..+++| ++-...+.+-||....+..-++. ++|+-
T Consensus 226 ~~~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~p--g~~~~~~~~~i~k~s~~~~~A~~fi~~l~ 288 (365)
T 3rpw_A 226 PQLILDGEADMCLAYTGSMSKLALEG-------APIDLTFN--QGFVYYDFFSIPKGAPNYDNALKLLSWRL 288 (365)
T ss_dssp HHHHHTTSCSEEEEEHHHHHHHHHHT-------CSEEEEEE--EEEEEEEEEECBTTCTTHHHHHHHHHHHT
T ss_pred HHHHHcCCeEEEEehhHHHHHHHhCC-------CCeEEeeC--CeeeeceEEEEECCCCCHHHHHHHHHHHc
Confidence 2355555555554333333322211 12233333 44455566777777666666666 66654
No 8
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=98.74 E-value=5.4e-10 Score=91.33 Aligned_cols=134 Identities=14% Similarity=0.214 Sum_probs=95.4
Q ss_pred CCCChHHhhCccCCCc-----eeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHhhhccccccccCCc-cccCC
Q 044009 10 GFKDWKDLWQPKLAGR-----ISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLALLGNQYLPDLNRSDS-PSRLS 82 (172)
Q Consensus 10 pptSWsDLfDPe~KGk-----IaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~eLkpnVr~y~f~SD~-~~~L~ 82 (172)
+|+||++||+++++|+ +.+.+++.+++++++.+.|.++++.+++ ++++.+.|+++++++.. |.++. ...+.
T Consensus 130 ~P~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~~ 207 (340)
T 3ttn_A 130 PIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSY--FHSSKYISDLA 207 (340)
T ss_dssp CCCSTHHHHCHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHHHHHHHHHHGGGCCE--ECSSHHHHHHH
T ss_pred CCccHHHHhChhhhccccCCeEEEECCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhHHhhe--eCCchHHHHHh
Confidence 7899999999987765 6899999999999999999999988877 68999999999999987 44432 22344
Q ss_pred CCCCc--ceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 83 YPTPH--LRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 83 ~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
.+..+ +.++++...++.- ..-...-....+++|.+++....+.+.||....+..-++. ++|+-
T Consensus 208 ~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~ 273 (340)
T 3ttn_A 208 NGNICVAFGYSGDVFQAAAR---AEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLL 273 (340)
T ss_dssp HTSCSEEEEEHHHHHHHHHH---HHHHTSCCCEEEECCTTCCEEEEEEEECBTTCSCHHHHHHHHHHHT
T ss_pred cCCeEEEEeccHHHHHHHHh---hhhccCCCceEEEeCCCccceeEEEEEEECCCCCHHHHHHHHHHhc
Confidence 44444 4444443322210 0001112234556788888777888899988888777877 77764
No 9
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=98.53 E-value=3.3e-08 Score=82.05 Aligned_cols=137 Identities=12% Similarity=0.107 Sum_probs=86.8
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHH-hhhccccccccCCcc-
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIG-RIAVQQNLAL-LGNQYLPDLNRSDSP- 78 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~e-l~kA~a~L~e-LkpnVr~y~f~SD~~- 78 (172)
|++.++ ++|++|++|++++++|+|+|.+.+.+.++.++...|.++++.+++ .+++.+.|++ +++++.. ++++..
T Consensus 137 Nkd~~~-~~P~Tw~el~~~~~~g~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~~l~~~~~~--~~~~~~~ 213 (343)
T 2v84_A 137 NKKAVP-SYARTWSIFSRKDLAYRMSMMDDMREVMGAALASLGYNVNTKNEQELAQAAILVTDHWKPNLVK--FDSDGYA 213 (343)
T ss_dssp ETTTCC-SCCSSGGGGGCGGGTTSEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHHTGGGEEE--ECSSSHH
T ss_pred EhHhcC-CCCCCHHHHhCHHHcCeEEEECChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhhhhe--eCchHHH
Confidence 788888 578999999999999999999888889999999999988877765 5788999999 8888776 333322
Q ss_pred ccCCCCCCcceeCCchHHHHH-HHhhhhhhhccccccccchh-hhHHHhhhhccCCcccccccCccc-cccc
Q 044009 79 SRLSYPTPHLRVSDKQCSIKA-IRLSRSRIDQRLTMTDNLSV-SITSSLFNSLLLPPTLSRIRSPYM-LSWS 147 (172)
Q Consensus 79 ~~L~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (172)
..+.++..+..+...-.+... +.. +-....+.+|. +++....+.+.||....+..-++. ++|+
T Consensus 214 ~~f~~G~~a~~~~~~~~~~~~~~~~------~~~~~~~~~P~~~g~~~~~~~~~I~~~s~~~~aA~~Fi~~l 279 (343)
T 2v84_A 214 KSFASGDFVVAHGFAEAFFAETPEA------MHEHIDFFIPQDVASPVYVDSFCIPKGARNRDLAHAFINFF 279 (343)
T ss_dssp HHHHHTSCSEEEECHHHHHHHSCGG------GGGGEEEECCTTTTCEEEEEEEBEETTCSCHHHHHHHHHHH
T ss_pred HHHhcCCEEEEEEecHHHHHHHHHh------cCCCeeEEeeCccCcceeeeeeEEECCCCCHHHHHHHHHHH
Confidence 234445444444322222110 110 00112233454 444334455666666555544554 5554
No 10
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=98.26 E-value=1.1e-07 Score=77.72 Aligned_cols=134 Identities=14% Similarity=0.075 Sum_probs=84.5
Q ss_pred CCCCCCCCCCCChHHhhCccCCCce----eeecChh-----HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhcccccc
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRI----SMVNSPR-----EVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDL 72 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkI----aMlDd~r-----Dv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~ 72 (172)
|++.++ ++|+||++||+++++|++ ++.+... ..+..++...|.+. ++.+++.+.|+++++++..++
T Consensus 118 nkd~~~-~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~a~~~l~~l~~~~~~~~ 192 (333)
T 3pu5_A 118 RPDKIQ-GGVKSWKEFVERTVAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGSGY----GDIEASIATLERMKPHIFKFF 192 (333)
T ss_dssp CTTTST-TCCSSHHHHHHHHHHTTTTTCEEEECGGGTSSHHHHHHHHHHHHSSST----TCHHHHHHHHHHHGGGEEEEE
T ss_pred chhhcC-CCCCCHHHHhChhhCCCccccccccCCcchhhHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhCccccccc
Confidence 889998 689999999999999999 9987432 23444455566622 235689999999999986644
Q ss_pred ccCCcc-ccCCCCCCcceeCCchHHHHHHHhhhhhhhcccc-ccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 73 NRSDSP-SRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLT-MTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 73 f~SD~~-~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
-+.... ..+.++..+..+.....+......+ .+ ..+++|.+++-...+.+.||... +..-++. ++|+-
T Consensus 193 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g-------~~~~~~~~P~~g~~~~~~~~~i~k~s-~~~~A~~Fi~~l~ 263 (333)
T 3pu5_A 193 TAFNDPVVLLTSGEGAIGPGWDGRTFIAEDST-------KGMVKWVDPTEGAVSSGPVMAVVKGG-KEDLAKAFMNYAL 263 (333)
T ss_dssp CSTTHHHHHHHHTSCSEEEEEHHHHHHHHHHT-------TTSSEEECCTTCCEEECCEEEEBTTS-CHHHHHHHHHHHT
T ss_pred CChHHHHHHHHcCCEEEEecccHHHHHHHhCC-------CCceeEEcCCCceeeccceEEEeCCC-CHHHHHHHHHHHc
Confidence 333222 2344555454444333333322221 23 34556777766666777777777 6666666 66653
No 11
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=98.18 E-value=7.2e-08 Score=79.23 Aligned_cols=136 Identities=15% Similarity=0.213 Sum_probs=85.3
Q ss_pred CCCChHHhhCccCCCcee-----eecChhHHHHHHHHHcCCCCCCCCHH-HH-HHHHHHHHhhhccccccccCC-ccccC
Q 044009 10 GFKDWKDLWQPKLAGRIS-----MVNSPREVIGTVLKYMGVSYNSNDIG-RI-AVQQNLALLGNQYLPDLNRSD-SPSRL 81 (172)
Q Consensus 10 pptSWsDLfDPe~KGkIa-----MlDd~rDv~g~ALl~LG~s~NT~D~e-l~-kA~a~L~eLkpnVr~y~f~SD-~~~~L 81 (172)
+|++|++|++++++|++. +.+++.++++.++.+.|.++++.+++ .+ ++.+.++++.+++.. +.++ ....+
T Consensus 130 ~p~tw~el~~~~~~~k~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~f 207 (344)
T 1a99_A 130 PVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRY--FHSSQYINDL 207 (344)
T ss_dssp CTTSTHHHHSHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHTHHHHHHHHHGGGCCE--ECSSTHHHHH
T ss_pred CCCCHHHHcCHHhcCCcccccccccCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhccceeE--ecChhHHHHh
Confidence 689999999987777655 77888889999898999998877766 67 899999999998876 3333 23335
Q ss_pred CCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 82 SYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 82 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
..+..+..+.+.-.+... ......+..-....+.+|.+++....+.+.||....+..-++. ++|+.
T Consensus 208 ~~G~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~ 274 (344)
T 1a99_A 208 ANGDICVAIGWAGDVWQA-SNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLL 274 (344)
T ss_dssp HTTSCSEEEEEHHHHHHH-HHHHHHHTCSCCEEEECCTTCEEEEEEEEECBTTCSCHHHHHHHHHHHH
T ss_pred hcCCEEEEEEccHHHHHH-HHhccccCCCCceEEEECCCCceeEEEeeEEECCCCCHHHHHHHHHHHc
Confidence 555555555443222221 1110000001122233666665555666777777766655665 56553
No 12
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=97.65 E-value=8.6e-06 Score=65.46 Aligned_cols=137 Identities=9% Similarity=0.123 Sum_probs=79.3
Q ss_pred CCCC-CCCCCCCChHHhhCccCCCceeeecChhH----HHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCC
Q 044009 2 HHNM-INENGFKDWKDLWQPKLAGRISMVNSPRE----VIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSD 76 (172)
Q Consensus 2 ntd~-V~~~pptSWsDLfDPe~KGkIaMlDd~rD----v~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD 76 (172)
|++. ++..+|++|++|++|+++|+|.+.+.... .+...+...| .+++.+.++++++++..+....+
T Consensus 109 n~~~~~~~~~p~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G---------~~~a~~~~~~l~~~~~~~~~~~~ 179 (322)
T 3e13_X 109 NKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYSKTLLASIIANDG---------NKEAKAWAKGVLENLATNPKGGD 179 (322)
T ss_dssp ETTSCCCCTTCCSGGGGGSGGGTTCEECCCTTSHHHHHHHHHHHHHHC---------HHHHHHHHHHHHHHBSSSCCSSH
T ss_pred CCccccCCCCCCCHHHHhhhhhcCeEeecCCCCchhHHHHHHHHHhcC---------HHHHHHHHHHHHHhcCcCCCCCc
Confidence 7888 87447899999999999999999875432 2222233334 13688889999998876443322
Q ss_pred c--cccCCCCCCcceeCCchHHHHHHHhhh--hhhhccccccccchh---hhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 77 S--PSRLSYPTPHLRVSDKQCSIKAIRLSR--SRIDQRLTMTDNLSV---SITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 77 ~--~~~L~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
. ...+..+..+..+.+.-.+ ..+.... .....-.+...++|. +++....+.+.|+....+..-++. ++|+-
T Consensus 180 ~~~~~~~~~G~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~~~~~A~~fi~fl~ 258 (322)
T 3e13_X 180 RDQARQVFAGEAKFAVMNTYYI-GLLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFML 258 (322)
T ss_dssp HHHHHHHHHTSCSEEEEEHHHH-HHHHTCSSHHHHHHHHTEEEECTTTTTTCBCEEEEEEEEETTCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCcEEeechHHH-HHHHhccccchhccccceeEecCCCCCCCceeeeeeeEEecCCCCHHHHHHHHHHHh
Confidence 1 2335566666666543222 1121110 011111233344666 565555567777776666555665 66654
No 13
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=97.55 E-value=9.3e-06 Score=65.67 Aligned_cols=136 Identities=15% Similarity=0.210 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChh----HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccC-C
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPR----EVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRS-D 76 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~r----Dv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~S-D 76 (172)
|++. + .+|++|++|++++++|++.+.+... ..+.+++...|.++++ ++.+++.+.++++++++..++-+. +
T Consensus 146 nkd~-~-~~p~tw~el~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~G~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~ 221 (351)
T 4edp_A 146 DPSA-G-IEINSWEDLWKPELKNKIAIPDITTTNGPAMVEIAAEKAGVDVKT--DNGEAAFKELEALKPNVVKTYSKSSD 221 (351)
T ss_dssp CGGG-C-CCCCSGGGGGCGGGTTCEEEECTTSTTHHHHHHHHHHHHTCCHHH--HTTHHHHHHHHHHGGGEEEEECCHHH
T ss_pred cCCC-C-CCCCCHHHHhChHhcCCeeecCcccccchHHHHHHHHhcCCCCCh--hhHHHHHHHHHHHHHhhhcccCChHH
Confidence 6666 4 6899999999999999999987422 2333444456876643 224689999999999877533222 2
Q ss_pred ccccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-ccccc
Q 044009 77 SPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWSH 148 (172)
Q Consensus 77 ~~~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (172)
....+.++..+..+.+.-.+......+ ....+.+|.+++-...+.+.||....+..-++. ++|+.
T Consensus 222 ~~~~f~~G~~a~~~~~~~~~~~~~~~~-------~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~ 287 (351)
T 4edp_A 222 LANMFSNGEIVAAVASDFAFGTISKAK-------PEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYAL 287 (351)
T ss_dssp HHHHHHTTSCSEEEEEHHHHHHHHHHC-------TTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHT
T ss_pred HHHHHHcCCEEEEecCcHHHHHHHhcC-------CCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhc
Confidence 223355666676666544433222111 122334666665555566777766666555555 55553
No 14
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=96.84 E-value=0.00028 Score=57.90 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhcccc
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLP 70 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~ 70 (172)
|++.++ ++|++|++|++++++|+|++.+...+.++.++...|..... + ++.+.++++++++..
T Consensus 133 Nkd~~~-~~P~Tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~---~a~~~~~~l~~~~~~ 195 (330)
T 2qry_A 133 DKNKLK-NPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYG--D---DAPQAWQKLAKKTVT 195 (330)
T ss_dssp ETTTCS-SCCSSHHHHHHCSSCCCEEEECTTTCHHHHHHHHHHHHHHG--G---GHHHHHHHHHTTEEE
T ss_pred ehhhcc-CCCCCHHHHHhHHhcCeeEeeCCCCCchHHHHHHHHHHhhC--h---HHHHHHHHHHhcCce
Confidence 788887 58899999999999999999875555555444332221111 1 477788888888765
No 15
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=96.72 E-value=5.4e-05 Score=62.85 Aligned_cols=134 Identities=12% Similarity=0.023 Sum_probs=69.9
Q ss_pred CCCCCCC-CCCCChHHhhC------ccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhcccccccc
Q 044009 2 HHNMINE-NGFKDWKDLWQ------PKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNR 74 (172)
Q Consensus 2 ntd~V~~-~pptSWsDLfD------Pe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~ 74 (172)
|++.+++ .+|+||++|++ |+++|+|++.+......+..+.... ... .+++.+.+++++++...++-+
T Consensus 142 Nk~~~~~~~~P~tw~dL~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~--~~~----~~~a~~~l~~l~~~~~~~~~~ 215 (355)
T 3c9h_A 142 HKPSFTTEKPPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRD--QEQ----FGDIWSVIKAMGAAGVKVYST 215 (355)
T ss_dssp EGGGCSSSCCCCSHHHHHHHHHHTHHHHTTCEEEECTTC-CHHHHHHHHH--HHH----CTTHHHHHHHHHHTTCEEESC
T ss_pred EHHhcCCCCCCCCHHHHHHHHHhcchhhCCceeecCccccchHHHHHhcc--hhc----cHHHHHHHHHHHhcCCeecCC
Confidence 7777763 36899999999 8999999998754433333332211 000 125778888888753232211
Q ss_pred C-CccccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhhhHHHhhhhccCCcccccccCccc-cccc
Q 044009 75 S-DSPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVSITSSLFNSLLLPPTLSRIRSPYM-LSWS 147 (172)
Q Consensus 75 S-D~~~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (172)
+ +....+..+..+..+.......... .++-.+..+++|.+++-...+.+.|+....+..-++. ++|+
T Consensus 216 ~~~~~~~~~~G~~a~~~~~~~~~~~~~------~~~~~~~~~~~P~~g~~~~~~~~~I~k~s~~~eaA~~Fi~fl 284 (355)
T 3c9h_A 216 SSAILERVSDGRFVLGYNILGSYAADW------ASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFF 284 (355)
T ss_dssp HHHHHHHHHTTSCSEEEEEEHHHHHHH------HHHCTTEEEECCSSCEEEECCEEEEETTBSCHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCeEEEEecchhHHHHH------HhcCCCeeEEecCCCceeeeeEEEEECCCCCHHHHHHHHHHH
Confidence 1 2222344555555553211111111 0111122344666665444556667666655555554 5554
No 16
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=96.12 E-value=0.0079 Score=48.91 Aligned_cols=87 Identities=11% Similarity=0.175 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccC--Cccc
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRS--DSPS 79 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~S--D~~~ 79 (172)
|+|.+++.+|++|++|++++++|+|++.+.. ..++.++...+.... . .+++.+.++++.+++..+...+ +...
T Consensus 136 Nkd~~~~~~P~tw~dl~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~--g--~~~a~~~~~~l~~~~~~~~~~~~~~~~~ 210 (346)
T 2voz_A 136 SRDRVNPADLSTYEALADPQWRGKILVRPSS-NVYNLSLTASRIAIH--G--EPETRRWLQGLVGNFARQPEGNDTAQIR 210 (346)
T ss_dssp ETTTCCGGGCCCSGGGGSGGGTTTEECCCTT-SHHHHHHHHHHHHHH--C--HHHHHHHHHHHHHTBSSSCCSCHHHHHH
T ss_pred ehhhcCccCCCCHHHHhhHHhcCcEEecCCC-CcchHHHHHHHHHhh--c--hHHHHHHHHHHHHhcCccccCCcHHHHH
Confidence 7888874478999999999999999987643 233322221111000 0 1367888888888765422222 1223
Q ss_pred cCCCCCCcceeCCc
Q 044009 80 RLSYPTPHLRVSDK 93 (172)
Q Consensus 80 ~L~~~~~~~~~s~~ 93 (172)
.+.++..+..+.+.
T Consensus 211 ~f~~G~~a~~~~~~ 224 (346)
T 2voz_A 211 AIAAGIGDVAIANS 224 (346)
T ss_dssp HHHTTSCSEEEEEH
T ss_pred HHHCCCceEEeccc
Confidence 35566666666544
No 17
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=95.92 E-value=0.0022 Score=51.58 Aligned_cols=132 Identities=11% Similarity=0.018 Sum_probs=67.8
Q ss_pred CCCCCCC-CCCCChHHhhCccCCCceeeecChhH--HHHHHHHHc-CCCCCCCCHHHHHHHHHHHHhhhccccccccC--
Q 044009 2 HHNMINE-NGFKDWKDLWQPKLAGRISMVNSPRE--VIGTVLKYM-GVSYNSNDIGRIAVQQNLALLGNQYLPDLNRS-- 75 (172)
Q Consensus 2 ntd~V~~-~pptSWsDLfDPe~KGkIaMlDd~rD--v~g~ALl~L-G~s~NT~D~el~kA~a~L~eLkpnVr~y~f~S-- 75 (172)
|++.+++ ++|++|++|++++++|+|++...... .+..++... | . +++.+.++++.++... +.+
T Consensus 111 nk~~~~~~~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G-------~--~~a~~~~~~l~~~~~~--~~~~~ 179 (312)
T 1xvx_A 111 NPEKISEAELPKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKG-------E--KATLEWLKAMKTNFTA--YKGNS 179 (312)
T ss_dssp CTTTSCGGGSCSSGGGGGSGGGTTSEEECTTSHHHHHHHHHHHHHHC-------H--HHHHHHHHHHHHHEEE--CSSHH
T ss_pred EhhhccccCCCCCHHHHhCHHhcCCEeeCCCCccHHHHHHHHHHHhC-------c--HHHHHHHHHHHHhCcc--cCCch
Confidence 7888863 36799999999999999998732211 122222222 3 1 2577888888877633 322
Q ss_pred CccccCCCCCCcceeCCchHHHHHHHhhhhhhhccccccccchhh---hHHHhhhhccCCcccccccCccc-cccc
Q 044009 76 DSPSRLSYPTPHLRVSDKQCSIKAIRLSRSRIDQRLTMTDNLSVS---ITSSLFNSLLLPPTLSRIRSPYM-LSWS 147 (172)
Q Consensus 76 D~~~~L~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (172)
+....+..+..+..+.+.-.+...+.... +.-....+.+|.+ ++....+.+.|+....+..-++. ++|+
T Consensus 180 ~~~~~~~~G~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~~~~~A~~fi~fl 252 (312)
T 1xvx_A 180 TVMKAVNAGQIDGGVIYHYYRFVDQAKTG---ENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKWI 252 (312)
T ss_dssp HHHHHHHTTSSSEEEEETHHHHHHHTTTC---TTTTTCEEECCCTTCGGGCEEEEEEEEBTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHcCceEEEEecchhHHHHHhhcc---cCCCceEEEccCCCCCcceeeeeeEEEecCCCCHHHHHHHHHHH
Confidence 12223455666665554433322221100 0112222234443 33333455666666555544554 5554
No 18
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Probab=95.62 E-value=0.018 Score=46.23 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=50.4
Q ss_pred CCCCCCC-CCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCC--cc
Q 044009 2 HHNMINE-NGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSD--SP 78 (172)
Q Consensus 2 ntd~V~~-~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD--~~ 78 (172)
|++.++. .+|++|++|++++++|+|++.+.. +.++.++...+.... ..+++.+.++++++++..+.++.+ ..
T Consensus 108 nkd~~~~~~~P~tw~el~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~----G~~~a~~~~~~l~~~~~~~~~~~~~~~~ 182 (320)
T 1q35_A 108 SKDRVGKLPAGFDYLDLAKPEYKGKVCVRSGK-NSYNVSLFAAMIEHY----GIEKTKAFLEGLKANLARKPQGGDRDQV 182 (320)
T ss_dssp ETTTTCSCCTTCCGGGGGSGGGTTCEECSCTT-SHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTBSSCCCSCHHHHH
T ss_pred ehHHhhhcCCCCCHHHHhhHHhCCcEEeccCC-CchhHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 7888873 278999999999999999987643 334332221111000 023678888888887654222222 22
Q ss_pred ccCCCCCCcceeCCc
Q 044009 79 SRLSYPTPHLRVSDK 93 (172)
Q Consensus 79 ~~L~~~~~~~~~s~~ 93 (172)
..+.++..+..+.+.
T Consensus 183 ~~f~~G~~a~~~~~~ 197 (320)
T 1q35_A 183 KAIKEGICDYSIGNS 197 (320)
T ss_dssp HHHHHTSCSEEEEET
T ss_pred HHHHCCCccEEeccH
Confidence 234455555555543
No 19
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=95.49 E-value=0.0071 Score=49.05 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCC--ccc
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSD--SPS 79 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD--~~~ 79 (172)
|++.+++.+|++|++|++++++|+|++.+.. ..++.++...+++. ....++.+.+.++.+++..+...++ ...
T Consensus 126 nkd~~~~~~p~tw~el~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~----~g~~~a~~~~~~l~~~~~~~~~~~~~~~~~ 200 (334)
T 2pt1_A 126 NKGKVKPEELSTYEELADPKWKGRVIIRSSS-NEYNQSLVASLVVA----DGEESTLAWAKGFVSNFAREPQGNDTAQIE 200 (334)
T ss_dssp ETTTCCGGGCCCSGGGGSGGGTTCBCCCCTT-SHHHHHHHHHHHHH----HCHHHHHHHHHHHHHTBSSCCCSCHHHHHH
T ss_pred ecccccccCCCCHHHHhhhhhcCeeEecCCC-CchHHHHHHHHHHc----cChHHHHHHHHHHHHhcCCCCCCCCHHHHH
Confidence 7888874468999999999999999987643 34444433222110 1134688888888877643212221 112
Q ss_pred cCCCCCCcceeCC
Q 044009 80 RLSYPTPHLRVSD 92 (172)
Q Consensus 80 ~L~~~~~~~~~s~ 92 (172)
.+.++..+..+.+
T Consensus 201 ~f~~G~~a~~~~~ 213 (334)
T 2pt1_A 201 AVSSGEADLTLAN 213 (334)
T ss_dssp HHHHTSCSEEEEE
T ss_pred HHhcCceeEEecc
Confidence 2445555555544
No 20
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=95.46 E-value=0.0078 Score=48.15 Aligned_cols=82 Identities=17% Similarity=0.054 Sum_probs=49.6
Q ss_pred CCCCCCC-CCCCChHHhhCccCCCceeeecChh--HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccC--C
Q 044009 2 HHNMINE-NGFKDWKDLWQPKLAGRISMVNSPR--EVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRS--D 76 (172)
Q Consensus 2 ntd~V~~-~pptSWsDLfDPe~KGkIaMlDd~r--Dv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~S--D 76 (172)
|++.+++ ++|++|++|++++++|++++.+... ..+..++...|. + .++.+.|+++.++... +.+ +
T Consensus 108 Nk~~~~~~~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G-----~---~~a~~~l~~l~~~~~~--~~~~~~ 177 (309)
T 1nnf_A 108 DHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKG-----D---KVALNWLKGLKENGKL--YAKNSV 177 (309)
T ss_dssp ETTTCCGGGSCSSGGGGGSGGGTTTEEECTTSHHHHHHHHHHHHHHC-----H---HHHHHHHHHHHHHEEE--CSSHHH
T ss_pred ehhhccccCCCCCHHHHhchhhcCeEeecCCCchHHHHHHHHHHhcC-----h---HHHHHHHHHHHHhCCC--CCCCch
Confidence 6787763 3689999999999999999875321 223333333222 1 2578888888877644 322 1
Q ss_pred ccccCCCCCCcceeCCc
Q 044009 77 SPSRLSYPTPHLRVSDK 93 (172)
Q Consensus 77 ~~~~L~~~~~~~~~s~~ 93 (172)
....+.++..+..+.+.
T Consensus 178 ~~~~~~~G~~a~~~~~~ 194 (309)
T 1nnf_A 178 ALQAVENGEVPAALINN 194 (309)
T ss_dssp HHHHHHTTSCSEEEEEH
T ss_pred HHHHHhcCCccEEEccH
Confidence 22234556666666553
No 21
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=93.36 E-value=0.14 Score=41.02 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=47.0
Q ss_pred CCC-CCCCCCCCChHHhhCccCCCceeeecChhHH----HHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccC-
Q 044009 2 HHN-MINENGFKDWKDLWQPKLAGRISMVNSPREV----IGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRS- 75 (172)
Q Consensus 2 ntd-~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv----~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~S- 75 (172)
|++ .++ + | +|.+|++++++|+|.+.+..... +...+...| . +++.+.+++++++...+...+
T Consensus 112 Nkd~~~~-~-P-tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G-------~--~~a~~~~~~l~~~~~~~~~~~~ 179 (323)
T 1y9u_A 112 EKDLKLD-S-F-RYGDLADPKWKGKVCIRSGQHPYNTALVAAMIAHDG-------A--EATEKWLRGVKANLARKAAGGD 179 (323)
T ss_dssp ETTCCCC-C-C-BGGGGGCGGGTTCEECCCTTSHHHHHHHHHHHHHHC-------H--HHHHHHHHHHHHHBSSCSCSCH
T ss_pred cCccccC-C-C-CHHHHhhHHhCCcEeecCCCcHhHHHHHHHHHHHhC-------h--HHHHHHHHHHHHccCcccCCCc
Confidence 788 887 4 4 99999999999999987532211 111122223 1 257777888887764422222
Q ss_pred -CccccCCCCCCcceeCCc
Q 044009 76 -DSPSRLSYPTPHLRVSDK 93 (172)
Q Consensus 76 -D~~~~L~~~~~~~~~s~~ 93 (172)
+....+.++..+..+.+.
T Consensus 180 ~~~~~~~~~G~~a~~~~~~ 198 (323)
T 1y9u_A 180 RDVARDILGGICDIGLANA 198 (323)
T ss_dssp HHHHHHHHTTSCSEEEEEH
T ss_pred hHHHHHHhCCcceEEEecH
Confidence 222335566666666543
No 22
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=92.87 E-value=0.16 Score=38.88 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=38.1
Q ss_pred CCCChHHhhCccCCCceeeecCh--h-----HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhccccccccCCccc-cC
Q 044009 10 GFKDWKDLWQPKLAGRISMVNSP--R-----EVIGTVLKYMGVSYNSNDIGRIAVQQNLALLGNQYLPDLNRSDSPS-RL 81 (172)
Q Consensus 10 pptSWsDLfDPe~KGkIaMlDd~--r-----Dv~g~ALl~LG~s~NT~D~el~kA~a~L~eLkpnVr~y~f~SD~~~-~L 81 (172)
.++||+|||+|++ ||+|.|.. . ..+...+..+| + .+.+.++++++..|+-++.... .+
T Consensus 94 ~~~sw~dL~~~~~--~i~~~d~~~~~~~~~~g~~~~~~~~~~------~------~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (237)
T 2hxw_A 94 KIKGLKDLANKKV--RIVVPEGAGKSNTSGTGVWEDMIGRTQ------D------IKTIQNFRNNIVAFVPNSGSARKLF 159 (237)
T ss_dssp CCCSHHHHHHSCC--CEEECCCTTSSCCTTTTHHHHHHHTTC------C------HHHHHHHHHTEEEECCCCTTC--CT
T ss_pred CCCCHHHhcCCCc--EEEecCCCCCCcccchHHHHHHHHHcc------C------HHHHHHHhhceEEEcCCHHHHHHHH
Confidence 4789999999976 79998742 1 12221111112 1 2446678888866444444433 25
Q ss_pred CCCCCc--ceeCCc
Q 044009 82 SYPTPH--LRVSDK 93 (172)
Q Consensus 82 ~~~~~~--~~~s~~ 93 (172)
..+... +.|+++
T Consensus 160 ~~g~~~~g~~~~~~ 173 (237)
T 2hxw_A 160 AQDQADAWITWIDW 173 (237)
T ss_dssp TTTTCSEEEEEHHH
T ss_pred HcCCeeEEEEechh
Confidence 544433 445443
No 23
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=90.11 E-value=0.44 Score=37.81 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHHH-----HHH----HHcCCCCCCCCHHHHHHHHHHHHhhhcccc
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVIG-----TVL----KYMGVSYNSNDIGRIAVQQNLALLGNQYLP 70 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~g-----~AL----l~LG~s~NT~D~el~kA~a~L~eLkpnVr~ 70 (172)
|++. . .+|++|++|++|++ +|++.+....-.+ .++ ...|. ++ +++.+.++++++++..
T Consensus 102 n~~~-~-~~p~tw~dL~~~~~--ki~~~~p~~~~~~~~~~~~~~~~~~~~~gg-----~~--~~a~~~l~~l~~~~~~ 168 (310)
T 1sbp_A 102 RKGN-P-KQIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNN-----DQ--AKAEDFVKALFKNVEV 168 (310)
T ss_dssp ETTC-T-TCCCSGGGGGSTTC--CEECCCTTTCHHHHHHHHHHHHHHHHHTTT-----CH--HHHHHHHHHHHHTEEE
T ss_pred eCCC-C-CCCCCHHHHcCccc--eEecCCCcccchhHHHHHHHHHHHHHHcCC-----CH--HHHHHHHHHHHhcCcc
Confidence 5554 2 46899999999987 7888763211111 111 23443 22 3688888999888765
No 24
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=81.68 E-value=0.85 Score=37.57 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCChHHhhC--ccCC-----CceeeecChhHHHH--HHHHHcCCCCC-------------CCCHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLA-----GRISMVNSPREVIG--TVLKYMGVSYN-------------SNDIGRIAVQQ 59 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~K-----GkIaMlDd~rDv~g--~ALl~LG~s~N-------------T~D~el~kA~a 59 (172)
|+|.++ ++|++|++|++ ++++ |++.+.....+.+. ..+...|.... -.+++..++.+
T Consensus 116 Nkdl~~-~~P~Twdel~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~ 194 (382)
T 2gha_A 116 NKDYVP-EPPKTMDELIEIAKQIDEEFGGEVRGFITSAAEFYYIAPFIFGYGGYVFKQTEKGLDVNDIGLANEGAIKGVK 194 (382)
T ss_dssp ETTTCS-SCCSBHHHHHHHHHHHHHHTTTSSEEEECCTTCHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHH
T ss_pred ehhhcc-CCchhHHHHHHHHHHHhccCCCCeeeEEecCcchHHHHHHHHhCCCeeeccCCCCccccccccCCHHHHHHHH
Confidence 789998 58899999998 4554 77777655444333 22334454321 12344466777
Q ss_pred HHHHhhhc
Q 044009 60 NLALLGNQ 67 (172)
Q Consensus 60 ~L~eLkpn 67 (172)
.++++.++
T Consensus 195 ~~~~l~~~ 202 (382)
T 2gha_A 195 LLKRLVDE 202 (382)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77777653
No 25
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=80.50 E-value=0.81 Score=39.19 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCChHHhhC--ccCC--CceeeecChhHHH--HHHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLA--GRISMVNSPREVI--GTVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~K--GkIaMlDd~rDv~--g~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++ ++++ |++.+.....+.+ ...+...|.... -.+++..++.+.++
T Consensus 116 Nkdl~~-~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~ 194 (461)
T 3csg_A 116 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 194 (461)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHH
T ss_pred Ehhhhc-cCCcCHHHHHHHHHHHhhCCCceeEecCCchHHHHHHHHhcCCeEeecccCcccccccCcCCHHHHHHHHHHH
Confidence 789998 68899999999 5555 7777665443333 223334454321 12344567777777
Q ss_pred Hhhh
Q 044009 63 LLGN 66 (172)
Q Consensus 63 eLkp 66 (172)
++..
T Consensus 195 ~l~~ 198 (461)
T 3csg_A 195 DLIK 198 (461)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 26
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=77.89 E-value=1.3 Score=38.35 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=39.4
Q ss_pred CCCCCCCCCCCCChHHhhC--ccCC--CceeeecChhHHH--HHHHHHcCCCCCC-------------CCHHHHHHHHHH
Q 044009 1 MHHNMINENGFKDWKDLWQ--PKLA--GRISMVNSPREVI--GTVLKYMGVSYNS-------------NDIGRIAVQQNL 61 (172)
Q Consensus 1 ~ntd~V~~~pptSWsDLfD--Pe~K--GkIaMlDd~rDv~--g~ALl~LG~s~NT-------------~D~el~kA~a~L 61 (172)
.|++.++ ++|++|++|++ ++++ |++.+.....+.+ ...+...|..... .+++..++.+.+
T Consensus 117 YNkdlf~-~~P~Twdel~~~a~~l~~~G~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~d~~~~~~~~~~~~~al~~~ 195 (465)
T 2zxt_A 117 YNKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFL 195 (465)
T ss_dssp CBTTTBS-SCCSSSTTSHHHHTTSCSSSCCSBCCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHH
T ss_pred EEhHhhc-CCCcCHHHHHHHHHHHhcCCcceeEecCcchHHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHH
Confidence 3889998 58899999999 6776 7766554333322 2233344543211 234456677777
Q ss_pred HHhhh
Q 044009 62 ALLGN 66 (172)
Q Consensus 62 ~eLkp 66 (172)
+++..
T Consensus 196 ~~l~~ 200 (465)
T 2zxt_A 196 VDLIK 200 (465)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 27
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=77.68 E-value=1 Score=37.54 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=38.4
Q ss_pred CCCCCCCCCCCChHHhhC--ccCC--CceeeecChhHHH--HHHHHHcCCCCCC-------------CCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLA--GRISMVNSPREVI--GTVLKYMGVSYNS-------------NDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~K--GkIaMlDd~rDv~--g~ALl~LG~s~NT-------------~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++ ++++ |++.+.....+.+ ...+...|....+ .+++..++.+.++
T Consensus 118 nkdl~~-~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~ 196 (421)
T 1mh3_A 118 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 196 (421)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEETTSHHHHHHHHHHH
T ss_pred ehhhcc-CCCCCHHHHHHHHHHHhcCCCCceeecCCchHHHHHHHHhcCCeeeccccCCCCccCccCCCHHHHHHHHHHH
Confidence 788898 68899999999 5554 7776654332322 2233444543211 2344456777777
Q ss_pred Hhhh
Q 044009 63 LLGN 66 (172)
Q Consensus 63 eLkp 66 (172)
++..
T Consensus 197 ~l~~ 200 (421)
T 1mh3_A 197 DLIK 200 (421)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 28
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=76.76 E-value=1.3 Score=38.18 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCChHHhhC--ccCC--CceeeecChhHHH--HHHHHHcCCCCCC-------------CCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLA--GRISMVNSPREVI--GTVLKYMGVSYNS-------------NDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~K--GkIaMlDd~rDv~--g~ALl~LG~s~NT-------------~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++ ++++ |++.+.....+.+ ...+...|....+ .+++..++.+.+.
T Consensus 118 Nkdl~~-~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~ 196 (487)
T 1hsj_A 118 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 196 (487)
T ss_dssp EGGGCS-SCCSBSTTSHHHHHHHTTTTCEEECCCSSSHHHHHHHHHHTTCCSEEECSSSEEEEEETTSSHHHHHHHHHHH
T ss_pred Ehhhhc-CCCCCHHHHHHHHHHHhcCCcceeeecCCchHHHHHHHHhcCCeecccccccccccccCCCCHHHHHHHHHHH
Confidence 788888 58899999999 5665 7776654432322 2223344544211 2344456777777
Q ss_pred Hhhh
Q 044009 63 LLGN 66 (172)
Q Consensus 63 eLkp 66 (172)
++..
T Consensus 197 ~l~~ 200 (487)
T 1hsj_A 197 DLIK 200 (487)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 29
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=76.33 E-value=1.9 Score=35.59 Aligned_cols=64 Identities=6% Similarity=0.040 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCChHHhhC--ccCC----CceeeecChhHHHH--HHHHHcCCCCC-------------CCCHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLA----GRISMVNSPREVIG--TVLKYMGVSYN-------------SNDIGRIAVQQN 60 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~K----GkIaMlDd~rDv~g--~ALl~LG~s~N-------------T~D~el~kA~a~ 60 (172)
|+|.++ ++|++|++|++ .+++ |+..+.....+.+. ..+...|.... -.+++..++.+.
T Consensus 136 nkdl~~-~~P~Twdel~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 214 (397)
T 2zyo_A 136 NKKLMG-QVPATYDELFQYAKANNKPDEQKYGVLFEANNFYYTYFLFAAKGAAVFKEQDGTLDPNEIGLNSPEAVQGMNE 214 (397)
T ss_dssp ETTTCS-SCCSBHHHHHHHHHHHCBGGGTBEEEEECTTCHHHHHHHHHHTTCCSEEEETTEEEEEEECTTSHHHHHHHHH
T ss_pred ehhhhc-CCCCCHHHHHHHHHHHhcCCCCeeeEEEecCcHHHHHHHHHhcCCeEEccCccCCCcCCcccCCHHHHHHHHH
Confidence 788888 68899999999 4665 77666543333322 22334454421 123444667777
Q ss_pred HHHhhh
Q 044009 61 LALLGN 66 (172)
Q Consensus 61 L~eLkp 66 (172)
++++..
T Consensus 215 ~~~l~~ 220 (397)
T 2zyo_A 215 VQKWFT 220 (397)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
No 30
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=74.48 E-value=1.4 Score=38.11 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCChHHhhC--ccCC--CceeeecChhHHH--HHHHHHcCCCCCC-------------CCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLA--GRISMVNSPREVI--GTVLKYMGVSYNS-------------NDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~K--GkIaMlDd~rDv~--g~ALl~LG~s~NT-------------~D~el~kA~a~L~ 62 (172)
|++.++ ++|++|++|++ ++++ |++.+.....+.+ ...+...|....+ .+++..++.+.+.
T Consensus 133 Nkdl~~-~~P~Twdel~~~a~~l~~~g~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~ 211 (477)
T 2vgq_A 133 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 211 (477)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHH
T ss_pred ehHhhc-cCCCCHHHHHHHHHHHHhCCcceeEecCCCchHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHHH
Confidence 788888 68899999999 5665 8776654433322 2233445543211 2344466777777
Q ss_pred Hhhh
Q 044009 63 LLGN 66 (172)
Q Consensus 63 eLkp 66 (172)
++..
T Consensus 212 ~l~~ 215 (477)
T 2vgq_A 212 DLIK 215 (477)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 31
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=72.27 E-value=1.4 Score=38.26 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCChHHhhC--ccCC--CceeeecChhHHH--HHHHHHcCCCCCC-------------CCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLA--GRISMVNSPREVI--GTVLKYMGVSYNS-------------NDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~K--GkIaMlDd~rDv~--g~ALl~LG~s~NT-------------~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++ ++++ |++.+.....+.+ ...+...|....+ .+++..++.+.++
T Consensus 119 Nkdlf~-~~P~Twdel~~~a~kl~~~G~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~d~~~~~~~~~~~~~al~~~~ 197 (463)
T 2xz3_A 119 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 197 (463)
T ss_dssp ETTTCS-SCCSBSTTHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHH
T ss_pred EhHhhh-CCCCCHHHHHHHHHHHHhCCcceeEecCCccHHHHHHHHHcCCcEeccccccccccccccCCHHHHHHHHHHH
Confidence 789898 58899999999 5555 7776654433322 2233344543211 2344566777777
Q ss_pred Hhhh
Q 044009 63 LLGN 66 (172)
Q Consensus 63 eLkp 66 (172)
++..
T Consensus 198 ~l~~ 201 (463)
T 2xz3_A 198 DLIK 201 (463)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 32
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=70.73 E-value=2.4 Score=33.86 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=19.1
Q ss_pred CCCChHHhh-CccCCCceeeecChhHHHH
Q 044009 10 GFKDWKDLW-QPKLAGRISMVNSPREVIG 37 (172)
Q Consensus 10 pptSWsDLf-DPe~KGkIaMlDd~rDv~g 37 (172)
+|++|.||| +|+ +||+|.|...+..|
T Consensus 109 ~p~sw~dll~~p~--~~i~~~~p~~~~~G 135 (296)
T 3cg1_A 109 NPDKWYEILARED--VRFGFSDPNQDPCG 135 (296)
T ss_dssp CGGGHHHHHTSTT--CCEEEECTTTCHHH
T ss_pred CCCCHHHHhcCCC--cEEEeCCCCCCchh
Confidence 468999998 675 79999984434454
No 33
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=69.30 E-value=2.1 Score=37.28 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCChHHhhC--ccCC--CceeeecChhHHH--HHHHHHcCCCCCC-------------CCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLA--GRISMVNSPREVI--GTVLKYMGVSYNS-------------NDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~K--GkIaMlDd~rDv~--g~ALl~LG~s~NT-------------~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++ ++++ |++.+.....+.+ ...+...|....+ .+++..++.+.+.
T Consensus 119 Nkdl~~-~~P~Twdel~~~a~~l~~~g~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~ 197 (509)
T 1r6z_P 119 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 197 (509)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHH
T ss_pred EhHhhc-CCCCCHHHHHHHHHHHHhCCcceeEecCCCcHHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHHH
Confidence 788888 58899999999 5554 7776654433322 2233344543211 2344456777777
Q ss_pred Hhhh
Q 044009 63 LLGN 66 (172)
Q Consensus 63 eLkp 66 (172)
++..
T Consensus 198 ~l~~ 201 (509)
T 1r6z_P 198 DLIK 201 (509)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 34
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=67.91 E-value=5.9 Score=32.51 Aligned_cols=32 Identities=9% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCChHHhhCc--cCC--CceeeecChhH
Q 044009 2 HHNMINENGFKDWKDLWQP--KLA--GRISMVNSPRE 34 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e~K--GkIaMlDd~rD 34 (172)
|+|.++ ++|++|++|++. +++ |++.+.....+
T Consensus 120 Nkdl~~-~~P~Twdel~~~~~~l~~~g~~~~~~~~~~ 155 (386)
T 2gh9_A 120 NKKYVK-EPPRTWEEFLALAQKLTTGATFGFLYNIGD 155 (386)
T ss_dssp ETTTCS-SCCSSHHHHHHHHHHHCSSSCEEEECCTTC
T ss_pred ehhhhc-cCCCCHHHHHHHHHHhhhCCEEEEEeecCc
Confidence 788888 588999999986 443 77766554433
No 35
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=65.69 E-value=2 Score=35.62 Aligned_cols=62 Identities=6% Similarity=0.115 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCChHHhhCccCCCceeeecChhHHH--HHHHHHcCCCCC-------------CCCHHHHHHHHHHHHhhh
Q 044009 2 HHNMINENGFKDWKDLWQPKLAGRISMVNSPREVI--GTVLKYMGVSYN-------------SNDIGRIAVQQNLALLGN 66 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDPe~KGkIaMlDd~rDv~--g~ALl~LG~s~N-------------T~D~el~kA~a~L~eLkp 66 (172)
|+|.++ ++|++|++|++ + +|+..+.....+.+ ...+...|.... -.+++..++.+.++++..
T Consensus 148 Nkdl~~-~~P~Twdel~~-~-~g~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~ 224 (402)
T 1urs_A 148 NKKLVP-QPPQTWAEFVK-D-ANAHGFMYDQANLYFDYAIIGGYGGYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVS 224 (402)
T ss_dssp ETTTCS-SCCCSHHHHHH-H-HHHHCEECCTTCHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHH
T ss_pred ehhhhc-cCCCCHHHHHh-c-cCcceeeecCCChhhHHHHHHhcCCeeecCCccccccCccccCCHHHHHHHHHHHHHHH
Confidence 789998 58899999999 5 66655554332322 222344564321 123445667777777754
No 36
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=64.61 E-value=3 Score=37.01 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCChHHhhC--ccCC--CceeeecChhHHH--HHHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLA--GRISMVNSPREVI--GTVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~K--GkIaMlDd~rDv~--g~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++ ++++ |++.+.....+.+ ...+...|.... -.+++..++.+.+.
T Consensus 118 Nkdlf~-~~P~TwdEl~~~a~klk~~G~~g~~~~~~~~~~~~~~l~~~Gg~~~~~~~g~~d~~~~~~~~~~~~~al~~l~ 196 (494)
T 1y4c_A 118 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 196 (494)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHH
T ss_pred EhHHhh-CCCCCHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHhcCCceeccccccccccccccCCHHHHHHHHHHH
Confidence 789998 68899999999 4554 7776654332332 222333454321 12344456777777
Q ss_pred Hhhh
Q 044009 63 LLGN 66 (172)
Q Consensus 63 eLkp 66 (172)
++..
T Consensus 197 ~L~~ 200 (494)
T 1y4c_A 197 DLIK 200 (494)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 37
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=62.25 E-value=9.1 Score=30.56 Aligned_cols=26 Identities=19% Similarity=0.511 Sum_probs=19.1
Q ss_pred CCCChHHhh-CccCCCceeeecChhHHHH
Q 044009 10 GFKDWKDLW-QPKLAGRISMVNSPREVIG 37 (172)
Q Consensus 10 pptSWsDLf-DPe~KGkIaMlDd~rDv~g 37 (172)
++++|.||+ +| +|||+|.|...+..|
T Consensus 102 ~~~~w~dll~~~--~~~I~~~~p~~~~~G 128 (295)
T 3cij_A 102 NSQNWYEILKRP--DVRFGFSNPNDDPCG 128 (295)
T ss_dssp CTTTHHHHHTST--TCCEEEECTTTCHHH
T ss_pred CcccHHHHhcCC--CcEEEEeCCCcCCcc
Confidence 468999965 67 589999985444455
No 38
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=61.59 E-value=7.4 Score=32.31 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCChHHhhC--ccCC--------CceeeecChhHHH--HHHHHHcCCCC-----------CCCCHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLA--------GRISMVNSPREVI--GTVLKYMGVSY-----------NSNDIGRIAVQ 58 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~K--------GkIaMlDd~rDv~--g~ALl~LG~s~-----------NT~D~el~kA~ 58 (172)
|+|.++ ++|++|++|++ .+++ |+..+.....+.+ ...+...|... .-.+++..++.
T Consensus 148 Nkdl~~-~~P~Twdel~~~~~~l~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~al 226 (416)
T 2xd3_A 148 NKDLVK-DAPKTFADLENLAKDSKYAFAGEDGKTTAFLADWTNFYYTYGLLAGNGAYVFGQNGKDAKDIGLANDGSIVGI 226 (416)
T ss_dssp ETTTCS-SCCCBHHHHHHHHHSGGGBCTTSTTCBCSEECCTTSHHHHHHHHHHTTCEEEHHHHTEEEEEETTSHHHHHHH
T ss_pred Ehhhhc-CCCCCHHHHHHHHHHhhcccccCCCCceeeEEecCcchhHHHHHHhhCCcccCCCCCcccccccCCHHHHHHH
Confidence 789998 68899999998 4665 6655544332222 12233345432 11234445677
Q ss_pred HHHHHhh
Q 044009 59 QNLALLG 65 (172)
Q Consensus 59 a~L~eLk 65 (172)
+.++++.
T Consensus 227 ~~~~~l~ 233 (416)
T 2xd3_A 227 NYAKSWY 233 (416)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
No 39
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=60.55 E-value=7.9 Score=32.84 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCChHHhhCc--c--CCCceeeecChhHHH-H-HHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--K--LAGRISMVNSPREVI-G-TVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e--~KGkIaMlDd~rDv~-g-~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. + -+|+..+.-...+.+ . ..+...|.... -.+++..++.+.++
T Consensus 118 Nkdl~~-~~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 196 (449)
T 3iot_A 118 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 196 (449)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCBSCCCCCSCHHHHHHHHTTTTCBSSEECSSCEETTCCBSSSHHHHHHHHHHH
T ss_pred ehHHhc-cCCCCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhhCCeeeccccccccccccccCCHHHHHHHHHHH
Confidence 889998 789999999986 2 246544432222222 2 22222343221 12344466777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++..+
T Consensus 197 ~l~~~ 201 (449)
T 3iot_A 197 DLIKN 201 (449)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77653
No 40
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=59.70 E-value=11 Score=30.27 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=19.1
Q ss_pred CCCChHHhh-CccCCCceeeecChhHHHH
Q 044009 10 GFKDWKDLW-QPKLAGRISMVNSPREVIG 37 (172)
Q Consensus 10 pptSWsDLf-DPe~KGkIaMlDd~rDv~g 37 (172)
++++|.||+ +| ++||+|.|...+..|
T Consensus 102 ~~~~w~dll~~~--~~~I~~~~p~~~~~G 128 (296)
T 3cfx_A 102 NTDNWYEILRRP--DVRYGFSNPNDDPAG 128 (296)
T ss_dssp CTTTHHHHHHST--TCCEEEECTTTCHHH
T ss_pred CcccHHHHhCCC--CeEEEEeCCCCCCCc
Confidence 468999955 77 589999985445555
No 41
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=57.08 E-value=6.3 Score=34.39 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCChHHhhCc--cC--CCceeeecChhHHH--HHHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--KL--AGRISMVNSPREVI--GTVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e~--KGkIaMlDd~rDv~--g~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. ++ +|+..+.-...+.+ ...+...|.... -.+++..++.+.++
T Consensus 118 Nkdl~~-~~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 196 (500)
T 3ob4_A 118 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLV 196 (500)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHH
T ss_pred EhHHhc-CCCCCHHHHHHHHHHHHhCCCceEEeecCccHHHHHHHHHhCCeeecccCCccccCCcccCCHHHHHHHHHHH
Confidence 789998 789999999996 32 46665543333222 223334454321 12344567777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++...
T Consensus 197 ~l~~~ 201 (500)
T 3ob4_A 197 DLIKN 201 (500)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77654
No 42
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=53.81 E-value=9.5 Score=33.32 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCChHHhhCc--c--CCCceeeecChhH--HHHHHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--K--LAGRISMVNSPRE--VIGTVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e--~KGkIaMlDd~rD--v~g~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. + -+|+..+.-...+ .+...+...|.... -.+++..++.+.++
T Consensus 119 Nkdl~~-~~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 197 (523)
T 3py7_A 119 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 197 (523)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHH
T ss_pred EhHHhh-cCCCCHHHHHHHHHHHHhCCCceeEeecCchHHHHHHHHhhCcceeccccccccccccccCCHHHHHHHHHHH
Confidence 789898 789999999996 2 2466554432222 22223334454321 13444567777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++..+
T Consensus 198 ~l~~~ 202 (523)
T 3py7_A 198 DLIKN 202 (523)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77654
No 43
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=53.70 E-value=27 Score=28.40 Aligned_cols=17 Identities=12% Similarity=0.308 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCChHHhhC
Q 044009 2 HHNMINENGFKDWKDLWQ 19 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD 19 (172)
|+|.++ ++|++|++|++
T Consensus 123 Nkdlf~-~~P~Twdel~~ 139 (381)
T 1elj_A 123 NKEMVS-EPPKTFDEMKA 139 (381)
T ss_dssp ETTTCS-SCCSSHHHHHH
T ss_pred ehHhhc-cCcccHHHHHH
Confidence 789998 68899999996
No 44
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=53.31 E-value=15 Score=29.25 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=19.1
Q ss_pred CCCChHHhh-CccCCCceeeecChhHHHH
Q 044009 10 GFKDWKDLW-QPKLAGRISMVNSPREVIG 37 (172)
Q Consensus 10 pptSWsDLf-DPe~KGkIaMlDd~rDv~g 37 (172)
++++|.||+ +| ++||+|.|...+..|
T Consensus 102 ~~~~w~dll~~p--~~~I~~~dp~~~~~G 128 (292)
T 3cfz_A 102 NSTNWYKILQRP--DVKIGFSNPNDDPCG 128 (292)
T ss_dssp CTTTHHHHTTST--TCCEEEECTTTCHHH
T ss_pred CcccHHHHhcCC--CcEEEeCCCCCCCCc
Confidence 458999966 67 589999985445555
No 45
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=52.81 E-value=10 Score=32.58 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCChHHhhCc--c--CCCceeeecChhHH--HHHHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--K--LAGRISMVNSPREV--IGTVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e--~KGkIaMlDd~rDv--~g~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. + -+|+..+.-...+. +...+...|.... -.+++..++.+.++
T Consensus 118 nkdl~~-~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 196 (581)
T 3o3u_N 118 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 196 (581)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHH
T ss_pred EhHHhh-cCCCCHHHHHHHHHHHhhCCCceEEeecCChHHHHHHHHhcCCceeecccCcccccccccCCHHHHHHHHHHH
Confidence 789998 789999999996 2 34665544333222 2222333454321 12344566777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++...
T Consensus 197 ~l~~~ 201 (581)
T 3o3u_N 197 DLIKN 201 (581)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77653
No 46
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=51.05 E-value=9.4 Score=32.28 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCChHHhhCc--c--CCCceeeecChhHH--HHHHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--K--LAGRISMVNSPREV--IGTVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e--~KGkIaMlDd~rDv--~g~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. + -+|+..+.-...+. +...+...|.... -.+++..++.+.++
T Consensus 118 nkdl~~-~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 196 (507)
T 3oai_A 118 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 196 (507)
T ss_dssp ETTTCS-SCCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHH
T ss_pred ehHhhc-cCcCCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhcCCeeecccCCCcCccccccCCHHHHHHHHHHH
Confidence 789998 789999999996 2 35665544322222 2223334454321 12344566777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++...
T Consensus 197 ~l~~~ 201 (507)
T 3oai_A 197 DLIKN 201 (507)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77653
No 47
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=50.37 E-value=12 Score=31.97 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCChHHhhCc--c--CCCceeeecChhHH--HHHHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--K--LAGRISMVNSPREV--IGTVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e--~KGkIaMlDd~rDv--~g~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. + -+|+..+.-...+. +...+...|.... -.+++..++.+.++
T Consensus 120 Nkdl~~-~~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 198 (475)
T 3n94_A 120 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 198 (475)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHH
T ss_pred ehHHhc-cCCCCHHHHHHHHHHHHhCCCceEEeecCCchHHHHHHHhcCCceeecCCCCccccccccCCHHHHHHHHHHH
Confidence 789998 789999999986 2 25766554333222 2223334454321 12344566777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++...
T Consensus 199 ~l~~~ 203 (475)
T 3n94_A 199 DLIKN 203 (475)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77653
No 48
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=46.72 E-value=27 Score=28.82 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCChHHhhCc--cCC----CceeeecChhHH--HHHHHHHcCCCCC-------------CCCHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--KLA----GRISMVNSPREV--IGTVLKYMGVSYN-------------SNDIGRIAVQQN 60 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e~K----GkIaMlDd~rDv--~g~ALl~LG~s~N-------------T~D~el~kA~a~ 60 (172)
|+|.++ +.|++|++|++. +++ +...+.....+. +...+...|.... -.+++..++.+.
T Consensus 156 nkdl~~-~~P~Twdel~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 234 (420)
T 4hw8_A 156 NKKLVK-NAPQTLEEVEANAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLNSKHVVKNAER 234 (420)
T ss_dssp ETTTCC-SCCCBHHHHHHHHHHHCBTTTTBEEEECCTTSHHHHHHHHCCTTCCSEEESSSSEEEEEECTTCHHHHHHHHH
T ss_pred Ehhhhh-hCCCCHHHHHHHHHHHhccCCceeEEEecCccHHHHHHHHHhcCCceeccCCCcccccccccCCHHHHHHHHH
Confidence 788998 458999999985 222 335554433222 2223333444321 123445667777
Q ss_pred HHHhhhc
Q 044009 61 LALLGNQ 67 (172)
Q Consensus 61 L~eLkpn 67 (172)
++++...
T Consensus 235 ~~~l~~~ 241 (420)
T 4hw8_A 235 LQKWYDK 241 (420)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7777543
No 49
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=45.10 E-value=21 Score=32.34 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCChHHhhCc----cCCCceeeecChhHH--HHHHHHHcCCCCCC-------------CCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP----KLAGRISMVNSPREV--IGTVLKYMGVSYNS-------------NDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP----e~KGkIaMlDd~rDv--~g~ALl~LG~s~NT-------------~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. +-+|...+.-...+. +...+...|..... .+++..++.+.++
T Consensus 118 Nkdl~~-~~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 196 (658)
T 3f5f_A 118 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 196 (658)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEESCCCCSSSEEECEESSSHHHHHHHHHHH
T ss_pred EhHHhh-CCCCCHHHHHHHHHHHHhCCCCeEEeecCchHHHHHHHHhcCCeeeecCCCcccccccccCCHHHHHHHHHHH
Confidence 788898 789999999996 234665554322222 22233444543211 2344456777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++...
T Consensus 197 ~l~~~ 201 (658)
T 3f5f_A 197 DLIKN 201 (658)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77553
No 50
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=44.52 E-value=23 Score=25.59 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=16.0
Q ss_pred CChHHhhCccCCCceeeecC
Q 044009 12 KDWKDLWQPKLAGRISMVNS 31 (172)
Q Consensus 12 tSWsDLfDPe~KGkIaMlDd 31 (172)
.+|+||+++++ |+|.+.+.
T Consensus 94 ~~~~dL~~~~~-~~i~~~~~ 112 (231)
T 1atg_A 94 NQGKVLAGNGW-RHIAISNP 112 (231)
T ss_dssp TTSGGGGSSSC-SCEEEECT
T ss_pred cchhhhccCCC-CEEEecCC
Confidence 48999999886 89999874
No 51
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=44.06 E-value=15 Score=34.05 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCChHHhhCc--c--CCCceeeecChhHHH--HHHHHHcCCCC-------------CCCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--K--LAGRISMVNSPREVI--GTVLKYMGVSY-------------NSNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e--~KGkIaMlDd~rDv~--g~ALl~LG~s~-------------NT~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. + -+|+..+.-...+.+ ...+...|... .-.+++..++.+.++
T Consensus 154 Nkdlfe-e~P~TWdEL~~~akklk~~G~~~~~~~~~~~~~~~~~l~~~Gg~~~~~~~~~~d~~~~~~d~~~~~~ale~l~ 232 (653)
T 3osr_A 154 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 232 (653)
T ss_dssp ETTTCS-SCCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHH
T ss_pred EhHHhh-CCCCCHHHHHHHHHHHHhCCCceeEeccCchHHHHHHHHHcCCeeeeccCcccccCccccCCHHHHHHHHHHH
Confidence 788898 789999999985 3 356655543332222 22233344422 113344567777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++..+
T Consensus 233 ~L~~~ 237 (653)
T 3osr_A 233 DLIKN 237 (653)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77654
No 52
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=41.83 E-value=19 Score=31.58 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCChHHhhCc--c--CCCceeeecChhHH--HHHHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--K--LAGRISMVNSPREV--IGTVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e--~KGkIaMlDd~rDv--~g~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. + -+|+..+.-...+. +...+...|.... -.+++..++.+.++
T Consensus 120 Nkdl~~-~~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 198 (539)
T 3h3g_A 120 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 198 (539)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHH
T ss_pred EhHHhc-CCCCCHHHHHHHHHHHHhCCCceEEeecCcHHHHHHHHHhcCCceeecccccccccccCCCCHHHHHHHHHHH
Confidence 789998 789999999985 2 24665544333222 2222334454321 12344566777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++...
T Consensus 199 ~l~~~ 203 (539)
T 3h3g_A 199 DLIKN 203 (539)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77653
No 53
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=41.20 E-value=15 Score=29.68 Aligned_cols=19 Identities=5% Similarity=0.169 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCChHHhhCc
Q 044009 2 HHNMINENGFKDWKDLWQP 20 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP 20 (172)
|+|.++.++|++|++|++-
T Consensus 112 Nkd~~g~~~P~Twdel~~~ 130 (371)
T 3thi_A 112 RKGDLKIGQVDNIYELYKK 130 (371)
T ss_dssp ETTCHHHHTCCBHHHHHHH
T ss_pred eCccccCCCCCcHHHHHHH
Confidence 5666543478999999983
No 54
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.13 E-value=23 Score=30.48 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCChHHhhCc--c--CCCceeeecChhHHH-H-HHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--K--LAGRISMVNSPREVI-G-TVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e--~KGkIaMlDd~rDv~-g-~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. + -+|...+.-...+.+ . ..+...|.... -.+++..++.+.++
T Consensus 132 Nkdl~~-~~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~d~~~~~~~~~~~~~al~~~~ 210 (471)
T 3mq9_A 132 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 210 (471)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHGGGTCEEEEECSSCEEEEEEESSSHHHHHHHHHHH
T ss_pred EhHHhc-CCCCCHHHHHHHHHHHHhCCCceEEecCCchHHHHHHHHhcCCeeeccCCCccccCCcCcCCHHHHHHHHHHH
Confidence 789898 789999999986 2 246655433322222 1 22223343211 12344566777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++...
T Consensus 211 ~l~~~ 215 (471)
T 3mq9_A 211 DLIKN 215 (471)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77653
No 55
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=39.51 E-value=73 Score=26.14 Aligned_cols=35 Identities=6% Similarity=0.099 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCChHHhhCc------cCCCceeeecChhHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP------KLAGRISMVNSPREVIG 37 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP------e~KGkIaMlDd~rDv~g 37 (172)
|+|.++ ++|++|.+|.+- +-.+..++.....+.+.
T Consensus 156 nkdl~~-~~p~Twdel~~~~~~~~~~~~~~~g~~~~~~~~~~ 196 (420)
T 4hs7_A 156 NKKLVK-NAPQTLEEVEANAAKLTDSKKKQYGMLFDAKNFYF 196 (420)
T ss_dssp ETTTCC-SCCCBHHHHHHHHHHHCBTTTTBEEEECCTTSHHH
T ss_pred Eccccc-cccccchhhHHHHHHHHhccCCceeeccCCCCccc
Confidence 789998 788999999863 34456666665554433
No 56
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=38.26 E-value=17 Score=31.86 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCCCCCCCCCCChHHhhCc--c--CCCceeeecChhH--HHHHHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--K--LAGRISMVNSPRE--VIGTVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e--~KGkIaMlDd~rD--v~g~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. + -+|+..+.-...+ .+...+...|.... -.+++..++.+.++
T Consensus 119 Nkdl~~-~~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~d~~~~~~~~~~~~~al~~~~ 197 (522)
T 3mp6_A 119 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 197 (522)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEECCCSSSGGGTHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHH
T ss_pred EhHhhc-cCCcCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhcCCceeeccccccccCccccCCHHHHHHHHHHH
Confidence 789898 789999999986 2 3466554322221 22233344454321 12344456777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++..+
T Consensus 198 ~l~~~ 202 (522)
T 3mp6_A 198 DLIKN 202 (522)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77653
No 57
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=30.64 E-value=33 Score=30.68 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCChHHhhCc--c--CCCceeeecChhHH--HHHHHHHcCCCCC-------------CCCHHHHHHHHHHH
Q 044009 2 HHNMINENGFKDWKDLWQP--K--LAGRISMVNSPREV--IGTVLKYMGVSYN-------------SNDIGRIAVQQNLA 62 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP--e--~KGkIaMlDd~rDv--~g~ALl~LG~s~N-------------T~D~el~kA~a~L~ 62 (172)
|+|.++ ++|++|++|++. + -+|+..+.-...+. +...+...|.... -.+++..++.+.++
T Consensus 118 Nkdl~~-~~P~Twdel~~~a~kl~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~l~ 196 (568)
T 3h4z_A 118 NKDLLP-NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLV 196 (568)
T ss_dssp ETTTCS-SCCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSCEEEEEEESSSHHHHHHHHHHH
T ss_pred EhHHhh-CCCCCHHHHHHHHHHHHhCCCceEEEecCchHHHHHHHHHcCCceeecCCCccccCccccCCHHHHHHHHHHH
Confidence 788898 789999999996 2 34665543322222 2223334454321 12344456777777
Q ss_pred Hhhhc
Q 044009 63 LLGNQ 67 (172)
Q Consensus 63 eLkpn 67 (172)
++...
T Consensus 197 ~l~~~ 201 (568)
T 3h4z_A 197 DLIKN 201 (568)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 76653
No 58
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=30.06 E-value=39 Score=30.49 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCChHHhhCc
Q 044009 2 HHNMINENGFKDWKDLWQP 20 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP 20 (172)
|+|.++ ++|++|++|++.
T Consensus 118 Nkdlf~-e~P~TwdEl~~~ 135 (637)
T 4dxb_A 118 NKDLLP-NPPKTWEEIPAL 135 (637)
T ss_dssp ETTTCS-SCCSBSTTHHHH
T ss_pred EcHHhc-CCCCCHHHHHHH
Confidence 789998 789999999975
No 59
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=28.06 E-value=34 Score=31.70 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCChHHhhCc----cCCCceeee
Q 044009 2 HHNMINENGFKDWKDLWQP----KLAGRISMV 29 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP----e~KGkIaMl 29 (172)
|+|.++ ++|++|++|++- +-+|+..+.
T Consensus 119 Nkdlf~-e~P~TWdEl~~~akklk~~g~~~~~ 149 (715)
T 4h1g_A 119 NKDLLP-NPPKTWEEIPALDKELKAKGKSALM 149 (715)
T ss_dssp ETTTCS-SCCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred EhHHhc-CCCCCHHHHHHHHHHHHhcCCCcee
Confidence 789998 789999999873 234554443
No 60
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=27.68 E-value=33 Score=28.10 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=32.8
Q ss_pred CCCCChHHhhCc--cCC---Cceeee--cChhHHHHHHHHHcCCCCCC--------CCHHHHHHHHHHHHhhhc
Q 044009 9 NGFKDWKDLWQP--KLA---GRISMV--NSPREVIGTVLKYMGVSYNS--------NDIGRIAVQQNLALLGNQ 67 (172)
Q Consensus 9 ~pptSWsDLfDP--e~K---GkIaMl--Dd~rDv~g~ALl~LG~s~NT--------~D~el~kA~a~L~eLkpn 67 (172)
.+|++|++|++. +++ |...+. ......+...+...|.+..+ .+++..++.+.++++...
T Consensus 158 ~~P~Twdel~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~ 231 (412)
T 3k01_A 158 EVPGSVAELKTAAAEITEKTGATGLYLRGDDPYWFLPYLYGEGGDLVDEKNKTVTVDDEAGVRAYRVIKDLVDS 231 (412)
T ss_dssp CCCSBHHHHHHHHHHHHHHHSCEEEECCCSCGGGGHHHHHHTTCCSEETTTTEECTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhcccCCCceeeCCcchHHHHHHHHHcCCceECCCCCeeccCCHHHHHHHHHHHHHHHc
Confidence 478999999985 333 554422 22223334445556665321 234456677777777654
No 61
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=26.83 E-value=35 Score=30.55 Aligned_cols=26 Identities=19% Similarity=0.471 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCChHHhhCc----cCCCceee
Q 044009 2 HHNMINENGFKDWKDLWQP----KLAGRISM 28 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP----e~KGkIaM 28 (172)
|+|.++ ++|++|++|.+- +-+|+..+
T Consensus 132 Nkdlf~-e~P~TwdEl~~~akklk~~g~~~~ 161 (602)
T 4b3n_A 132 NKDLLP-NPPKTWEEIPALDKELKAKGKSAL 161 (602)
T ss_dssp ETTTCS-SCCSBTTHHHHHHHHHHTTTCEEE
T ss_pred EhHHhc-CCCCCHHHHHHHHHHHhhcCCccc
Confidence 789998 789999999874 34455443
No 62
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=23.89 E-value=34 Score=28.86 Aligned_cols=58 Identities=10% Similarity=-0.027 Sum_probs=32.1
Q ss_pred CCCCChHHhhCc--cC-----CCceeee--cChhHHHHHHHHHcCCCCCC--------CCHHHHHHHHHHHHhhh
Q 044009 9 NGFKDWKDLWQP--KL-----AGRISMV--NSPREVIGTVLKYMGVSYNS--------NDIGRIAVQQNLALLGN 66 (172)
Q Consensus 9 ~pptSWsDLfDP--e~-----KGkIaMl--Dd~rDv~g~ALl~LG~s~NT--------~D~el~kA~a~L~eLkp 66 (172)
.+|++|++|++. ++ .|...+. .+....+...+...|....+ .+++..++.+.++++..
T Consensus 161 ~~P~Twdel~~~~~~l~~~~g~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~al~~~~~l~~ 235 (458)
T 3uor_A 161 QMPKTWAEMEQVMAAIKRKVGPDRYAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQ 235 (458)
T ss_dssp SCCCBHHHHHHHHHHHHHHHCTTSEEEECCTTCCHHHHHHHHTSSSCSEETTTTEECTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcccCCCceeEecCchhHHHHHHHHHHcCCeEEcCCCCeeecCCHHHHHHHHHHHHHHH
Confidence 578999999984 32 3444443 22223344444455665422 23445667777777654
No 63
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Probab=20.89 E-value=61 Score=28.24 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCChHHhhCc
Q 044009 2 HHNMINENGFKDWKDLWQP 20 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfDP 20 (172)
|+|.++ ++|++|++|.+-
T Consensus 122 Nkdlf~-e~P~Twdel~~~ 139 (487)
T 4exk_A 122 NKDLLP-NPPKTWEEIPAL 139 (487)
T ss_dssp ETTTCS-SCCSBSTTHHHH
T ss_pred Eeeccc-cCCchHHHHHHH
Confidence 789998 789999999874
No 64
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=20.59 E-value=62 Score=30.13 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCChHHhhC--ccCC--Cceee
Q 044009 2 HHNMINENGFKDWKDLWQ--PKLA--GRISM 28 (172)
Q Consensus 2 ntd~V~~~pptSWsDLfD--Pe~K--GkIaM 28 (172)
|+|.++ ++|++|++|++ ++++ |+..+
T Consensus 122 Nkdlf~-~~P~TWdEl~~~a~klk~~g~~~~ 151 (805)
T 2nvu_B 122 NKDLLP-NPPKTWEEIPALDKELKAKGKSAL 151 (805)
T ss_dssp CTTTCS-SCCSBSTTHHHHHHHHHTTTCEEE
T ss_pred EhHhhc-CCCcCHHHHHHHHHHHHhcCCCce
Confidence 889998 78999999986 3444 55433
Done!