BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044011
         (99 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SLU|A Chain A, Crystal Structure Of Nmb0315
 pdb|3SLU|B Chain B, Crystal Structure Of Nmb0315
          Length = 371

 Score = 28.9 bits (63), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%)

Query: 49 EMVYMFAEWYKPGCSLEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99
          +  Y   E  +PG SL   L  SG   + + R  EK+GG   LR    D S
Sbjct: 10 QTAYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQS 60


>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
           Ananatis
          Length = 501

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 66  YPLRGSGALVNALVRGIEKFGGRLSLRSR 94
           +P  G+GALV  +++  +  GG + L +R
Sbjct: 215 FPRGGTGALVQGMIKLFQDLGGEVVLNAR 243


>pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa
          Length = 633

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 1   GALGATKLLRPFSDIIDSLELKDPFVRNWID 31
           G +GAT L   F+       L  PFVR+W+D
Sbjct: 349 GLIGATNLNHNFNCSTVLPPLSTPFVRSWLD 379


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.141    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,896,404
Number of Sequences: 62578
Number of extensions: 99418
Number of successful extensions: 194
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 4
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)