BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044011
         (99 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4G0P3|HYDIN_HUMAN Hydrocephalus-inducing protein homolog OS=Homo sapiens GN=HYDIN PE=1
            SV=3
          Length = 5121

 Score = 32.7 bits (73), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 44   GILSAEMVYMFAEWYKPGCSLEYPLRGSGALVNALVRGIEKFGGRLSLRSRGK 96
            G++  E + +FAE Y     + +P    G L   +VR  E+    L L++RGK
Sbjct: 3025 GVVQIENIMVFAEAYDIALDITFPKGAEGGLDFGIVRVTEEAKQPLQLKNRGK 3077


>sp|Q52QW2|CRTS2_ONCHC Prolycopene isomerase 2, chloroplastic OS=Oncidium hybrid cultivar
           GN=CRTISO2 PE=2 SV=1
          Length = 587

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 21  LKDPFVRNWIDLLAFLLAGVKS--NGILSAEMVYMFAEWYKPGCSLEYPLRGSGALVNAL 78
           +KDP + ++ID   F+++ VK+    +++A MV     +      + YP+ G G +  AL
Sbjct: 249 IKDPQLLSFIDAECFIVSTVKALHTPMINASMVLCDRHF----GGINYPVGGVGGIAKAL 304

Query: 79  VRGIEKFGGRL 89
             G+   G +L
Sbjct: 305 ANGLVNKGSKL 315


>sp|Q52QW3|CRTS1_ONCHC Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar
           GN=CRTISO1 PE=2 SV=1
          Length = 587

 Score = 30.4 bits (67), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 21  LKDPFVRNWIDLLAFLLAGVKS--NGILSAEMVYMFAEWYKPGCSLEYPLRGSGALVNAL 78
           +KDP + ++ID   F+++ VK+    +++A MV     +      + YP+ G G +  AL
Sbjct: 249 IKDPQLLSFIDAECFIVSTVKALHTPMINASMVLCDRHF----GGINYPVGGVGGIAKAL 304

Query: 79  VRGIEKFGGRL 89
             G+   G +L
Sbjct: 305 ANGLVNKGSKL 315


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.141    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,923,288
Number of Sequences: 539616
Number of extensions: 1251284
Number of successful extensions: 2908
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2907
Number of HSP's gapped (non-prelim): 4
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)