Query 044011
Match_columns 99
No_of_seqs 114 out of 1068
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02733 desat_CrtD C-3',4' d 99.6 7.9E-15 1.7E-19 110.8 8.5 90 7-98 167-258 (492)
2 COG1233 Phytoene dehydrogenase 99.6 2E-14 4.3E-19 109.2 8.7 90 5-99 162-251 (487)
3 TIGR02730 carot_isom carotene 99.5 6.6E-14 1.4E-18 106.0 7.9 89 7-98 167-255 (493)
4 TIGR02734 crtI_fam phytoene de 99.4 1.3E-12 2.9E-17 98.9 7.8 87 7-98 159-245 (502)
5 KOG4254 Phytoene desaturase [C 99.3 3E-12 6.6E-17 96.3 7.0 89 10-98 201-290 (561)
6 PLN02487 zeta-carotene desatur 98.9 5.9E-09 1.3E-13 81.0 9.3 88 10-98 230-321 (569)
7 TIGR03467 HpnE squalene-associ 98.9 7.9E-09 1.7E-13 75.7 9.5 90 9-99 130-224 (419)
8 PRK07233 hypothetical protein; 98.9 6.3E-09 1.4E-13 76.7 8.7 90 9-99 131-225 (434)
9 PTZ00363 rab-GDP dissociation 98.8 4.7E-08 1E-12 74.0 9.5 87 9-98 165-258 (443)
10 TIGR02732 zeta_caro_desat caro 98.7 1.7E-07 3.7E-12 71.3 9.2 88 9-98 153-245 (474)
11 PRK07208 hypothetical protein; 98.6 2.5E-07 5.4E-12 69.7 7.2 88 10-98 133-244 (479)
12 PLN02612 phytoene desaturase 98.5 8.4E-07 1.8E-11 68.9 9.0 90 9-99 242-335 (567)
13 TIGR02731 phytoene_desat phyto 98.4 3.3E-06 7.2E-11 63.3 10.0 89 9-98 147-239 (453)
14 PRK12416 protoporphyrinogen ox 98.4 1.8E-06 3.8E-11 64.9 7.2 88 9-99 145-251 (463)
15 PRK11883 protoporphyrinogen ox 98.2 2.7E-06 5.8E-11 63.2 6.1 87 10-99 141-246 (451)
16 PLN02576 protoporphyrinogen ox 97.9 3.3E-05 7.1E-10 58.5 6.2 88 9-99 145-264 (496)
17 TIGR00562 proto_IX_ox protopor 97.8 4.5E-05 9.8E-10 57.1 6.0 87 10-99 137-250 (462)
18 COG1232 HemY Protoporphyrinoge 97.5 0.00014 3.1E-09 55.4 4.8 87 9-99 134-239 (444)
19 PLN02529 lysine-specific histo 96.5 0.012 2.5E-07 47.7 6.8 32 63-99 348-379 (738)
20 PF00996 GDI: GDP dissociation 96.3 0.025 5.3E-07 43.3 7.2 90 7-98 163-258 (438)
21 PF01266 DAO: FAD dependent ox 96.1 0.0066 1.4E-07 43.1 3.3 37 62-98 134-173 (358)
22 PF07156 Prenylcys_lyase: Pren 95.8 0.014 3E-07 43.6 3.9 84 7-98 67-150 (368)
23 TIGR03862 flavo_PP4765 unchara 95.4 0.049 1.1E-06 40.9 5.7 37 62-98 75-112 (376)
24 PLN02676 polyamine oxidase 95.2 0.038 8.3E-07 42.5 4.8 36 64-99 214-257 (487)
25 COG2081 Predicted flavoprotein 95.2 0.026 5.7E-07 42.7 3.6 38 62-99 100-138 (408)
26 PLN02328 lysine-specific histo 94.8 0.1 2.2E-06 42.8 6.2 32 63-99 428-459 (808)
27 PLN02268 probable polyamine ox 94.8 0.034 7.4E-07 41.5 3.3 30 65-99 194-223 (435)
28 TIGR02485 CobZ_N-term precorri 94.5 0.061 1.3E-06 40.4 4.2 34 65-98 116-149 (432)
29 PRK13977 myosin-cross-reactive 94.5 0.18 3.9E-06 39.9 6.8 27 72-98 226-252 (576)
30 COG0579 Predicted dehydrogenas 93.9 0.067 1.5E-06 40.8 3.2 38 62-99 140-180 (429)
31 COG1231 Monoamine oxidase [Ami 93.8 0.049 1.1E-06 41.7 2.5 33 64-99 201-233 (450)
32 TIGR02352 thiamin_ThiO glycine 93.7 0.088 1.9E-06 37.4 3.5 37 62-98 124-163 (337)
33 PLN02568 polyamine oxidase 93.4 0.075 1.6E-06 41.5 2.9 34 64-99 234-267 (539)
34 PRK12845 3-ketosteroid-delta-1 93.3 0.1 2.3E-06 40.9 3.6 33 65-98 211-243 (564)
35 PRK11728 hydroxyglutarate oxid 92.9 0.11 2.4E-06 38.4 3.1 37 62-98 136-175 (393)
36 PLN03000 amine oxidase 92.9 0.4 8.7E-06 39.8 6.4 32 63-99 372-403 (881)
37 KOG1439 RAB proteins geranylge 92.7 0.057 1.2E-06 41.0 1.2 85 11-98 167-258 (440)
38 COG2907 Predicted NAD/FAD-bind 92.4 1.1 2.3E-05 34.1 7.5 88 9-99 150-244 (447)
39 TIGR01320 mal_quin_oxido malat 92.0 0.19 4E-06 38.8 3.4 37 62-98 165-204 (483)
40 PF03486 HI0933_like: HI0933-l 91.7 0.28 6.1E-06 37.1 4.0 36 63-98 99-135 (409)
41 PRK00711 D-amino acid dehydrog 91.7 0.25 5.4E-06 36.5 3.6 36 63-98 189-227 (416)
42 PRK05257 malate:quinone oxidor 91.6 0.23 5E-06 38.4 3.4 37 62-98 170-210 (494)
43 PRK12409 D-amino acid dehydrog 91.3 0.26 5.6E-06 36.5 3.4 36 63-98 185-223 (410)
44 TIGR03197 MnmC_Cterm tRNA U-34 91.2 0.17 3.8E-06 37.1 2.4 36 62-98 122-160 (381)
45 TIGR03329 Phn_aa_oxid putative 91.2 0.34 7.3E-06 36.8 3.9 36 63-98 171-209 (460)
46 PF01593 Amino_oxidase: Flavin 91.1 0.02 4.2E-07 41.2 -2.7 29 71-99 208-236 (450)
47 PLN02976 amine oxidase 90.7 0.77 1.7E-05 40.4 5.9 31 64-99 928-958 (1713)
48 PRK08274 tricarballylate dehyd 90.6 0.45 9.7E-06 36.0 4.2 33 66-98 125-157 (466)
49 PF00070 Pyr_redox: Pyridine n 90.5 0.41 8.8E-06 27.5 3.1 30 69-98 37-66 (80)
50 TIGR03364 HpnW_proposed FAD de 89.2 0.61 1.3E-05 33.9 3.8 37 63-99 133-173 (365)
51 TIGR01377 soxA_mon sarcosine o 88.7 0.59 1.3E-05 34.0 3.4 36 63-98 133-171 (380)
52 PRK12843 putative FAD-binding 87.1 0.78 1.7E-05 36.1 3.4 34 65-98 210-247 (578)
53 PRK07121 hypothetical protein; 86.7 0.95 2.1E-05 34.6 3.7 29 70-98 175-203 (492)
54 COG2509 Uncharacterized FAD-de 86.5 0.74 1.6E-05 35.7 2.9 29 70-98 171-199 (486)
55 PF00890 FAD_binding_2: FAD bi 85.8 0.99 2.1E-05 33.4 3.3 29 70-98 139-167 (417)
56 PRK01747 mnmC bifunctional tRN 85.6 0.84 1.8E-05 36.3 2.9 36 62-98 395-433 (662)
57 COG1252 Ndh NADH dehydrogenase 84.8 1.3 2.7E-05 33.8 3.4 31 69-99 206-236 (405)
58 PTZ00383 malate:quinone oxidor 84.1 1.3 2.8E-05 34.5 3.3 37 62-98 197-243 (497)
59 PRK12842 putative succinate de 83.9 1.5 3.3E-05 34.3 3.7 28 71-98 213-240 (574)
60 TIGR01373 soxB sarcosine oxida 83.7 1.4 2.9E-05 32.6 3.2 36 63-98 171-209 (407)
61 PRK06134 putative FAD-binding 83.1 1.5 3.3E-05 34.5 3.4 28 71-98 216-243 (581)
62 PRK13339 malate:quinone oxidor 82.9 1.8 3.9E-05 33.7 3.7 37 62-98 171-211 (497)
63 PRK05329 anaerobic glycerol-3- 82.8 1.6 3.5E-05 33.2 3.3 29 69-98 257-285 (422)
64 KOG2844 Dimethylglycine dehydr 82.7 1.5 3.4E-05 35.7 3.3 38 61-98 173-213 (856)
65 TIGR03377 glycerol3P_GlpA glyc 80.8 2.1 4.6E-05 33.0 3.4 35 63-98 117-154 (516)
66 PF06039 Mqo: Malate:quinone o 80.6 2 4.4E-05 33.5 3.2 29 71-99 180-209 (488)
67 TIGR03378 glycerol3P_GlpB glyc 79.6 2.3 5.1E-05 32.5 3.2 28 71-98 262-289 (419)
68 PRK12844 3-ketosteroid-delta-1 79.6 2.5 5.4E-05 33.1 3.5 30 69-98 205-234 (557)
69 TIGR00275 flavoprotein, HI0933 78.9 4.1 9E-05 30.5 4.4 34 65-98 97-131 (400)
70 PRK06481 fumarate reductase fl 77.7 2.6 5.7E-05 32.5 3.1 27 72-98 190-216 (506)
71 TIGR01813 flavo_cyto_c flavocy 77.2 3.3 7.2E-05 31.0 3.4 28 71-98 129-156 (439)
72 PF13738 Pyr_redox_3: Pyridine 76.2 2.7 5.9E-05 27.6 2.5 29 71-99 81-109 (203)
73 PRK04176 ribulose-1,5-biphosph 76.0 3.9 8.5E-05 28.9 3.4 28 71-98 103-130 (257)
74 PRK11101 glpA sn-glycerol-3-ph 74.1 3.8 8.2E-05 32.0 3.1 36 63-98 138-175 (546)
75 PRK11259 solA N-methyltryptoph 73.4 4.5 9.8E-05 29.3 3.2 36 63-98 137-175 (376)
76 PF06557 DUF1122: Protein of u 72.5 1.7 3.6E-05 29.3 0.7 45 20-72 86-130 (170)
77 PRK12835 3-ketosteroid-delta-1 72.3 4.7 0.0001 31.9 3.3 29 70-98 211-239 (584)
78 PRK07843 3-ketosteroid-delta-1 72.0 4.8 0.0001 31.5 3.3 30 69-98 205-234 (557)
79 PTZ00318 NADH dehydrogenase-li 71.2 5.7 0.00012 29.8 3.4 28 72-99 228-255 (424)
80 PRK06847 hypothetical protein; 70.6 5.3 0.00011 29.0 3.0 27 72-98 107-133 (375)
81 PRK12839 hypothetical protein; 70.4 5.9 0.00013 31.3 3.4 28 71-98 213-240 (572)
82 TIGR02032 GG-red-SF geranylger 70.1 5.7 0.00012 27.4 3.0 27 72-98 91-117 (295)
83 PRK07333 2-octaprenyl-6-methox 68.8 7.1 0.00015 28.6 3.4 27 72-98 111-137 (403)
84 COG4716 Myosin-crossreactive a 68.4 31 0.00066 26.9 6.7 30 70-99 225-254 (587)
85 COG3349 Uncharacterized conser 68.4 12 0.00026 29.3 4.7 87 10-98 149-241 (485)
86 PRK08773 2-octaprenyl-3-methyl 67.2 7.9 0.00017 28.4 3.4 27 72-98 113-139 (392)
87 PF15647 Tox-REase-3: Restrict 67.1 8.1 0.00018 23.9 2.8 28 64-94 81-108 (109)
88 PRK08010 pyridine nucleotide-d 66.7 8.1 0.00018 29.0 3.4 27 72-98 199-225 (441)
89 TIGR00031 UDP-GALP_mutase UDP- 66.7 3.9 8.4E-05 30.8 1.7 32 64-98 190-221 (377)
90 TIGR00292 thiazole biosynthesi 66.3 8.1 0.00018 27.3 3.2 28 71-98 99-126 (254)
91 PRK09564 coenzyme A disulfide 66.1 8.6 0.00019 28.8 3.5 27 72-98 191-217 (444)
92 PRK07818 dihydrolipoamide dehy 65.0 9.1 0.0002 29.1 3.4 28 71-98 212-239 (466)
93 COG5044 MRS6 RAB proteins gera 64.8 6.3 0.00014 30.1 2.4 36 63-98 220-255 (434)
94 PRK06416 dihydrolipoamide dehy 63.2 10 0.00022 28.6 3.4 27 72-98 213-239 (462)
95 TIGR01988 Ubi-OHases Ubiquinon 63.1 9.4 0.0002 27.6 3.1 27 72-98 106-133 (385)
96 PRK12266 glpD glycerol-3-phosp 63.0 9.3 0.0002 29.6 3.2 28 71-98 154-181 (508)
97 PRK05249 soluble pyridine nucl 63.0 10 0.00022 28.6 3.4 27 72-98 216-242 (461)
98 PLN02464 glycerol-3-phosphate 62.5 9.7 0.00021 30.4 3.3 27 72-98 232-258 (627)
99 PF06100 Strep_67kDa_ant: Stre 61.9 10 0.00022 29.8 3.2 27 72-98 207-233 (500)
100 PRK13512 coenzyme A disulfide 61.3 11 0.00025 28.4 3.3 27 72-98 189-215 (438)
101 TIGR01816 sdhA_forward succina 61.2 12 0.00026 29.5 3.5 29 70-98 117-145 (565)
102 TIGR03169 Nterm_to_SelD pyridi 61.2 12 0.00026 27.2 3.4 27 72-98 191-217 (364)
103 PRK06912 acoL dihydrolipoamide 60.9 12 0.00026 28.4 3.4 27 72-98 211-237 (458)
104 PRK05976 dihydrolipoamide dehy 60.9 11 0.00025 28.6 3.3 28 71-98 220-247 (472)
105 KOG1276 Protoporphyrinogen oxi 60.6 22 0.00048 27.8 4.7 37 63-99 240-276 (491)
106 PRK06116 glutathione reductase 60.3 12 0.00027 28.1 3.4 28 71-98 207-234 (450)
107 PRK08275 putative oxidoreducta 59.3 14 0.0003 28.9 3.6 29 70-98 135-163 (554)
108 PRK13369 glycerol-3-phosphate 59.1 12 0.00026 28.8 3.2 27 72-98 155-181 (502)
109 TIGR01350 lipoamide_DH dihydro 58.8 14 0.0003 27.9 3.4 27 72-98 211-237 (461)
110 TIGR01984 UbiH 2-polyprenyl-6- 58.3 14 0.0003 26.8 3.3 28 71-98 104-132 (382)
111 PRK10157 putative oxidoreducta 57.5 15 0.00033 27.7 3.4 27 72-98 108-134 (428)
112 PRK14727 putative mercuric red 57.2 15 0.00032 28.2 3.4 28 71-98 227-254 (479)
113 TIGR01423 trypano_reduc trypan 57.1 15 0.00032 28.4 3.4 27 72-98 231-257 (486)
114 PRK09754 phenylpropionate diox 57.0 16 0.00034 27.1 3.4 27 72-98 186-212 (396)
115 PRK06175 L-aspartate oxidase; 56.3 22 0.00048 27.0 4.2 34 65-98 120-155 (433)
116 PRK06370 mercuric reductase; V 56.0 16 0.00035 27.7 3.4 27 72-98 212-238 (463)
117 COG0665 DadA Glycine/D-amino a 55.9 18 0.00039 26.1 3.6 36 63-98 144-183 (387)
118 KOG2820 FAD-dependent oxidored 55.7 12 0.00027 28.3 2.6 28 72-99 153-180 (399)
119 PRK14694 putative mercuric red 55.6 17 0.00036 27.7 3.4 28 71-98 217-244 (468)
120 PRK06115 dihydrolipoamide dehy 55.5 16 0.00035 27.8 3.4 27 72-98 215-241 (466)
121 TIGR03385 CoA_CoA_reduc CoA-di 55.4 16 0.00035 27.2 3.3 27 72-98 179-205 (427)
122 PRK12837 3-ketosteroid-delta-1 55.1 16 0.00036 28.2 3.4 28 71-98 172-200 (513)
123 PRK05945 sdhA succinate dehydr 54.9 20 0.00044 28.2 3.9 29 70-98 133-161 (575)
124 PRK04965 NADH:flavorubredoxin 54.5 16 0.00034 26.9 3.1 27 72-98 183-209 (377)
125 PRK06996 hypothetical protein; 54.4 17 0.00038 26.8 3.3 27 72-98 115-141 (398)
126 PF08323 Glyco_transf_5: Starc 53.9 19 0.00042 25.1 3.3 26 65-90 12-37 (245)
127 TIGR01812 sdhA_frdA_Gneg succi 53.8 23 0.00049 27.7 4.0 28 71-98 128-155 (566)
128 TIGR00789 flhB_rel flhB C-term 53.8 14 0.0003 21.9 2.2 29 66-94 20-48 (82)
129 TIGR01421 gluta_reduc_1 glutat 53.7 18 0.0004 27.4 3.4 27 72-98 207-233 (450)
130 PRK07804 L-aspartate oxidase; 53.2 18 0.0004 28.2 3.4 28 71-98 143-170 (541)
131 PF01494 FAD_binding_3: FAD bi 53.1 13 0.00028 26.1 2.3 27 72-98 111-137 (356)
132 PRK06834 hypothetical protein; 53.0 18 0.0004 27.8 3.3 27 72-98 100-126 (488)
133 PRK06327 dihydrolipoamide dehy 52.8 19 0.00041 27.5 3.4 28 71-98 223-250 (475)
134 PRK07190 hypothetical protein; 52.6 19 0.00041 27.8 3.3 28 71-98 108-135 (487)
135 TIGR01424 gluta_reduc_2 glutat 52.1 21 0.00045 27.0 3.4 27 72-98 207-233 (446)
136 PRK10015 oxidoreductase; Provi 51.6 21 0.00045 27.0 3.3 27 72-98 108-134 (429)
137 PRK07251 pyridine nucleotide-d 51.5 21 0.00046 26.8 3.4 27 72-98 198-224 (438)
138 PLN02507 glutathione reductase 51.5 21 0.00045 27.6 3.4 28 71-98 243-270 (499)
139 PF13439 Glyco_transf_4: Glyco 51.4 25 0.00054 21.7 3.3 26 67-92 10-35 (177)
140 PRK05714 2-octaprenyl-3-methyl 51.3 18 0.00038 26.7 2.9 27 72-98 112-138 (405)
141 PRK08243 4-hydroxybenzoate 3-m 50.9 17 0.00036 26.8 2.8 27 72-98 103-129 (392)
142 PRK13748 putative mercuric red 50.6 22 0.00047 27.6 3.4 28 71-98 309-336 (561)
143 cd00027 BRCT Breast Cancer Sup 50.3 20 0.00043 18.6 2.4 21 72-92 12-32 (72)
144 COG0446 HcaD Uncharacterized N 50.0 24 0.00051 25.5 3.4 34 66-99 170-205 (415)
145 PF07045 DUF1330: Protein of u 50.0 30 0.00064 19.0 3.1 24 72-95 5-28 (65)
146 PRK08255 salicylyl-CoA 5-hydro 49.9 21 0.00045 29.2 3.3 28 71-98 96-123 (765)
147 TIGR02053 MerA mercuric reduct 49.9 23 0.00049 26.8 3.4 27 72-98 207-233 (463)
148 PRK08205 sdhA succinate dehydr 49.5 25 0.00054 27.8 3.6 28 71-98 139-166 (583)
149 PF02522 Antibiotic_NAT: Amino 49.5 14 0.00031 25.6 2.1 26 64-90 9-34 (229)
150 PF00533 BRCT: BRCA1 C Terminu 49.2 17 0.00037 19.8 2.1 23 68-90 14-36 (78)
151 COG2257 Uncharacterized homolo 48.9 18 0.00039 22.0 2.2 28 66-93 25-52 (92)
152 PRK06184 hypothetical protein; 48.7 24 0.00051 27.1 3.3 27 72-98 109-135 (502)
153 PRK06263 sdhA succinate dehydr 48.4 21 0.00046 27.8 3.1 28 71-98 133-160 (543)
154 PF02680 DUF211: Uncharacteriz 48.0 21 0.00046 21.8 2.4 17 75-91 60-76 (95)
155 PRK07845 flavoprotein disulfid 47.8 26 0.00057 26.7 3.4 28 71-98 217-244 (466)
156 PRK09078 sdhA succinate dehydr 47.1 25 0.00054 27.9 3.3 28 71-98 148-175 (598)
157 TIGR01438 TGR thioredoxin and 46.4 25 0.00053 27.1 3.1 27 72-98 220-246 (484)
158 PRK05569 flavodoxin; Provision 45.8 33 0.00071 21.4 3.2 25 67-91 11-35 (141)
159 PRK08244 hypothetical protein; 45.3 29 0.00063 26.5 3.3 27 72-98 100-126 (493)
160 PF08659 KR: KR domain; Inter 44.7 22 0.00047 23.4 2.3 25 63-87 1-25 (181)
161 PRK10262 thioredoxin reductase 44.6 18 0.0004 25.8 2.1 27 72-98 185-211 (321)
162 PTZ00139 Succinate dehydrogena 44.3 28 0.00061 27.8 3.2 28 71-98 165-192 (617)
163 TIGR01754 flav_RNR ribonucleot 43.8 37 0.00081 21.3 3.2 23 68-90 11-33 (140)
164 TIGR00551 nadB L-aspartate oxi 43.5 32 0.00068 26.4 3.3 28 71-98 127-155 (488)
165 PRK08958 sdhA succinate dehydr 43.3 33 0.00072 27.2 3.5 29 70-98 141-169 (588)
166 PRK07512 L-aspartate oxidase; 43.3 33 0.00071 26.7 3.4 29 70-98 134-163 (513)
167 PRK12834 putative FAD-binding 43.2 33 0.00073 26.8 3.4 27 72-98 148-178 (549)
168 PRK08626 fumarate reductase fl 43.2 37 0.0008 27.4 3.7 30 69-98 155-184 (657)
169 PLN02546 glutathione reductase 43.1 33 0.00072 27.1 3.4 28 71-98 292-319 (558)
170 PRK14989 nitrite reductase sub 43.1 32 0.0007 28.7 3.5 26 73-98 188-213 (847)
171 PF10087 DUF2325: Uncharacteri 42.6 26 0.00056 20.8 2.2 26 67-92 4-29 (97)
172 PTZ00058 glutathione reductase 42.4 35 0.00075 27.1 3.4 27 72-98 278-304 (561)
173 PRK07573 sdhA succinate dehydr 42.2 34 0.00074 27.5 3.4 24 75-98 173-196 (640)
174 PRK05675 sdhA succinate dehydr 42.0 42 0.00091 26.5 3.8 29 70-98 124-152 (570)
175 PTZ00052 thioredoxin reductase 41.8 30 0.00065 26.7 2.9 27 72-98 222-248 (499)
176 PRK08163 salicylate hydroxylas 41.7 34 0.00075 25.0 3.2 27 72-98 109-136 (396)
177 cd01635 Glycosyltransferase_GT 41.5 34 0.00074 21.9 2.9 27 65-91 8-35 (229)
178 COG4353 Uncharacterized conser 41.2 15 0.00032 24.9 1.0 36 37-74 104-139 (192)
179 cd03063 TRX_Fd_FDH_beta TRX-li 41.2 50 0.0011 19.9 3.3 20 68-87 13-32 (92)
180 PRK05568 flavodoxin; Provision 40.1 46 0.001 20.7 3.2 24 68-91 12-35 (142)
181 TIGR01753 flav_short flavodoxi 40.0 44 0.00094 20.5 3.1 25 67-91 8-32 (140)
182 COG0644 FixC Dehydrogenases (f 39.9 36 0.00078 25.3 3.1 27 72-98 95-121 (396)
183 COG0654 UbiH 2-polyprenyl-6-me 39.6 36 0.00077 25.1 3.0 28 71-98 103-131 (387)
184 PF00258 Flavodoxin_1: Flavodo 39.2 50 0.0011 20.5 3.3 23 68-90 7-29 (143)
185 PF02826 2-Hacid_dh_C: D-isome 39.2 30 0.00064 22.8 2.3 23 70-92 43-65 (178)
186 PRK12938 acetyacetyl-CoA reduc 39.1 41 0.00088 22.6 3.0 28 64-91 5-32 (246)
187 PRK07057 sdhA succinate dehydr 38.6 47 0.001 26.4 3.6 29 70-98 146-174 (591)
188 PRK09072 short chain dehydroge 38.3 42 0.00091 22.9 3.0 28 64-91 7-34 (263)
189 smart00292 BRCT breast cancer 37.9 39 0.00085 17.8 2.4 28 65-92 8-36 (80)
190 TIGR02374 nitri_red_nirB nitri 37.8 44 0.00095 27.5 3.4 26 73-98 183-208 (785)
191 PRK07666 fabG 3-ketoacyl-(acyl 37.8 45 0.00097 22.3 3.1 28 64-91 9-36 (239)
192 COG1888 Uncharacterized protei 37.1 37 0.0008 20.7 2.2 28 65-92 52-79 (97)
193 PRK07395 L-aspartate oxidase; 36.9 44 0.00095 26.4 3.2 29 70-98 132-161 (553)
194 TIGR03140 AhpF alkyl hydropero 36.8 53 0.0011 25.5 3.6 28 71-98 266-293 (515)
195 cd03795 GT1_like_4 This family 36.6 45 0.00098 23.2 3.0 27 65-91 9-36 (357)
196 PRK07588 hypothetical protein; 36.6 33 0.00073 25.1 2.4 26 72-98 103-128 (391)
197 KOG4405 GDP dissociation inhib 35.9 2.2E+02 0.0048 22.5 7.4 85 9-98 222-312 (547)
198 PRK15317 alkyl hydroperoxide r 35.8 51 0.0011 25.5 3.4 28 71-98 265-292 (517)
199 PRK07814 short chain dehydroge 35.8 49 0.0011 22.7 3.1 28 63-90 11-38 (263)
200 PRK08020 ubiF 2-octaprenyl-3-m 35.3 50 0.0011 24.1 3.2 27 72-98 112-139 (391)
201 PRK06452 sdhA succinate dehydr 35.2 51 0.0011 26.0 3.4 28 71-98 135-162 (566)
202 PRK06114 short chain dehydroge 35.0 54 0.0012 22.3 3.1 29 63-91 9-37 (254)
203 PRK08339 short chain dehydroge 35.0 48 0.001 22.9 2.9 28 64-91 10-37 (263)
204 TIGR00166 S6 ribosomal protein 34.8 68 0.0015 18.9 3.2 20 71-90 17-36 (93)
205 PLN02172 flavin-containing mon 34.8 47 0.001 25.6 3.0 29 71-99 110-140 (461)
206 PRK12481 2-deoxy-D-gluconate 3 34.6 57 0.0012 22.2 3.2 28 64-91 10-37 (251)
207 PF01250 Ribosomal_S6: Ribosom 34.5 68 0.0015 18.7 3.1 22 69-90 16-37 (92)
208 COG1249 Lpd Pyruvate/2-oxoglut 34.4 46 0.001 25.8 2.9 28 71-98 213-240 (454)
209 PF08734 GYD: GYD domain; Int 34.3 49 0.0011 19.6 2.5 19 72-90 19-37 (91)
210 PRK08226 short chain dehydroge 34.0 56 0.0012 22.2 3.1 28 64-91 8-35 (263)
211 PLN00128 Succinate dehydrogena 34.0 48 0.001 26.7 3.1 29 70-98 185-213 (635)
212 PTZ00306 NADH-dependent fumara 33.9 58 0.0013 28.2 3.7 28 71-98 543-573 (1167)
213 PF00106 adh_short: short chai 33.8 58 0.0013 20.3 3.0 24 65-88 3-26 (167)
214 cd03083 TRX_Fd_NuoE_hoxF TRX-l 33.6 42 0.00092 19.2 2.1 21 69-89 15-35 (80)
215 COG0655 WrbA Multimeric flavod 33.4 66 0.0014 21.7 3.3 27 65-91 10-36 (207)
216 PRK07494 2-octaprenyl-6-methox 33.1 53 0.0011 24.0 3.0 27 72-98 111-137 (388)
217 PRK08013 oxidoreductase; Provi 32.8 58 0.0013 24.1 3.2 27 72-98 111-138 (400)
218 PRK07364 2-octaprenyl-6-methox 32.7 57 0.0012 24.0 3.1 28 71-98 120-148 (415)
219 PRK06475 salicylate hydroxylas 32.7 62 0.0013 23.9 3.3 27 72-98 107-134 (400)
220 cd02980 TRX_Fd_family Thioredo 32.6 70 0.0015 17.6 2.9 19 69-87 14-32 (77)
221 PRK06924 short chain dehydroge 32.5 63 0.0014 21.7 3.2 27 65-91 4-30 (251)
222 KOG2665 Predicted FAD-dependen 32.0 47 0.001 25.3 2.5 29 71-99 195-223 (453)
223 PRK07608 ubiquinone biosynthes 32.0 56 0.0012 23.7 3.0 27 71-98 110-137 (388)
224 PF03807 F420_oxidored: NADP o 31.7 53 0.0011 18.8 2.3 21 70-90 6-29 (96)
225 CHL00123 rps6 ribosomal protei 31.7 82 0.0018 18.9 3.2 21 70-90 22-42 (97)
226 PRK06101 short chain dehydroge 31.7 64 0.0014 21.7 3.1 27 65-91 4-30 (240)
227 cd03791 GT1_Glycogen_synthase_ 31.5 68 0.0015 24.0 3.4 25 67-91 14-38 (476)
228 PRK12935 acetoacetyl-CoA reduc 31.1 60 0.0013 21.8 2.8 28 64-91 8-35 (247)
229 PRK10538 malonic semialdehyde 31.1 59 0.0013 22.0 2.8 27 65-91 3-29 (248)
230 PRK06183 mhpA 3-(3-hydroxyphen 30.9 57 0.0012 25.3 3.0 26 73-98 114-140 (538)
231 TIGR01811 sdhA_Bsu succinate d 30.9 59 0.0013 25.9 3.1 28 71-98 128-159 (603)
232 PF14542 Acetyltransf_CG: GCN5 30.9 98 0.0021 17.6 3.4 28 68-95 37-64 (78)
233 PRK06854 adenylylsulfate reduc 30.9 69 0.0015 25.6 3.4 28 71-98 131-159 (608)
234 PRK06057 short chain dehydroge 30.9 68 0.0015 21.7 3.1 28 64-91 9-36 (255)
235 PRK06113 7-alpha-hydroxysteroi 30.8 70 0.0015 21.7 3.2 29 63-91 12-40 (255)
236 PRK06756 flavodoxin; Provision 30.7 74 0.0016 20.0 3.1 24 68-91 12-35 (148)
237 PRK07023 short chain dehydroge 30.7 56 0.0012 22.0 2.6 27 65-91 4-30 (243)
238 PLN02253 xanthoxin dehydrogena 30.4 68 0.0015 22.1 3.1 28 64-91 20-47 (280)
239 PRK05732 2-octaprenyl-6-methox 30.0 63 0.0014 23.5 2.9 27 72-98 112-139 (395)
240 PRK07045 putative monooxygenas 29.9 59 0.0013 23.8 2.8 27 72-98 106-133 (388)
241 PRK06180 short chain dehydroge 29.8 69 0.0015 22.2 3.0 28 64-91 6-33 (277)
242 PRK12747 short chain dehydroge 29.8 67 0.0015 21.7 2.9 28 64-91 6-33 (252)
243 COG0492 TrxB Thioredoxin reduc 29.7 92 0.002 22.7 3.7 51 46-98 154-205 (305)
244 PF03358 FMN_red: NADPH-depend 29.7 72 0.0016 20.0 2.9 26 65-90 10-35 (152)
245 PRK07063 short chain dehydroge 29.7 73 0.0016 21.6 3.1 28 64-91 9-36 (260)
246 PRK08643 acetoin reductase; Va 29.7 69 0.0015 21.6 3.0 26 65-90 5-30 (256)
247 PRK05717 oxidoreductase; Valid 29.6 76 0.0016 21.5 3.2 28 64-91 12-39 (255)
248 PRK12742 oxidoreductase; Provi 29.6 70 0.0015 21.2 2.9 28 64-91 8-35 (237)
249 PRK07454 short chain dehydroge 29.6 76 0.0016 21.2 3.1 28 64-91 8-35 (241)
250 PRK07062 short chain dehydroge 29.5 72 0.0016 21.7 3.1 28 64-91 10-37 (265)
251 cd03822 GT1_ecORF704_like This 29.5 70 0.0015 22.2 3.0 27 65-91 8-35 (366)
252 PF03460 NIR_SIR_ferr: Nitrite 29.4 50 0.0011 18.0 1.9 22 72-93 23-45 (69)
253 PRK07791 short chain dehydroge 29.3 74 0.0016 22.3 3.1 28 64-91 8-35 (286)
254 PRK07856 short chain dehydroge 29.3 79 0.0017 21.4 3.2 28 64-91 8-35 (252)
255 PRK09271 flavodoxin; Provision 29.3 84 0.0018 20.3 3.2 23 68-90 11-33 (160)
256 TIGR03325 BphB_TodD cis-2,3-di 29.3 73 0.0016 21.7 3.0 28 64-91 7-34 (262)
257 PRK08264 short chain dehydroge 29.2 66 0.0014 21.4 2.8 27 64-90 8-35 (238)
258 PRK08063 enoyl-(acyl carrier p 29.0 77 0.0017 21.2 3.1 27 64-90 6-32 (250)
259 PRK05867 short chain dehydroge 28.9 78 0.0017 21.4 3.1 28 64-91 11-38 (253)
260 PRK12367 short chain dehydroge 28.8 80 0.0017 21.8 3.2 28 64-91 16-43 (245)
261 PRK06179 short chain dehydroge 28.7 68 0.0015 21.9 2.8 29 64-92 6-34 (270)
262 PRK08085 gluconate 5-dehydroge 28.7 77 0.0017 21.4 3.1 28 64-91 11-38 (254)
263 TIGR01292 TRX_reduct thioredox 28.6 74 0.0016 21.9 3.0 26 72-98 57-82 (300)
264 PRK06126 hypothetical protein; 28.3 77 0.0017 24.5 3.3 26 73-98 127-153 (545)
265 PRK08936 glucose-1-dehydrogena 28.0 75 0.0016 21.6 2.9 28 64-91 9-36 (261)
266 PRK08340 glucose-1-dehydrogena 27.9 64 0.0014 22.0 2.6 26 66-91 4-29 (259)
267 PRK05866 short chain dehydroge 27.9 83 0.0018 22.2 3.2 28 64-91 42-69 (293)
268 PF06967 Mo-nitro_C: Mo-depend 27.9 74 0.0016 19.0 2.4 26 8-33 2-27 (84)
269 PRK06398 aldose dehydrogenase; 27.8 81 0.0018 21.6 3.1 28 64-91 8-35 (258)
270 TIGR01989 COQ6 Ubiquinone bios 27.8 73 0.0016 23.9 3.0 27 72-98 117-146 (437)
271 TIGR02415 23BDH acetoin reduct 27.8 84 0.0018 21.1 3.1 26 65-90 3-28 (254)
272 PRK06463 fabG 3-ketoacyl-(acyl 27.7 79 0.0017 21.4 3.0 28 64-91 9-36 (255)
273 PF00542 Ribosomal_L12: Riboso 27.6 1.2E+02 0.0027 17.0 3.4 30 62-91 38-67 (68)
274 COG3967 DltE Short-chain dehyd 27.5 62 0.0013 23.0 2.4 27 65-91 8-34 (245)
275 PRK07677 short chain dehydroge 27.4 79 0.0017 21.4 3.0 27 65-91 4-30 (252)
276 PLN02815 L-aspartate oxidase 27.4 72 0.0016 25.5 3.0 28 71-98 154-182 (594)
277 PRK09126 hypothetical protein; 27.3 78 0.0017 23.1 3.0 27 72-98 110-137 (392)
278 PRK06292 dihydrolipoamide dehy 27.3 70 0.0015 24.1 2.9 26 72-98 210-235 (460)
279 PRK09730 putative NAD(P)-bindi 27.2 88 0.0019 20.8 3.1 26 65-90 4-29 (247)
280 PRK07523 gluconate 5-dehydroge 27.0 90 0.0019 21.1 3.2 28 64-91 12-39 (255)
281 PRK07478 short chain dehydroge 27.0 76 0.0016 21.5 2.8 28 64-91 8-35 (254)
282 PRK08993 2-deoxy-D-gluconate 3 27.0 87 0.0019 21.3 3.1 28 64-91 12-39 (253)
283 KOG1336 Monodehydroascorbate/f 27.0 79 0.0017 24.9 3.0 26 73-98 256-281 (478)
284 PRK07326 short chain dehydroge 26.8 77 0.0017 21.0 2.8 28 64-91 8-35 (237)
285 PRK08642 fabG 3-ketoacyl-(acyl 26.8 81 0.0018 21.1 2.9 28 64-91 7-34 (253)
286 PRK06194 hypothetical protein; 26.6 97 0.0021 21.4 3.3 27 64-90 8-34 (287)
287 PRK06069 sdhA succinate dehydr 26.6 94 0.002 24.5 3.5 28 71-98 136-164 (577)
288 PRK08017 oxidoreductase; Provi 26.5 88 0.0019 21.0 3.0 27 65-91 5-31 (256)
289 TIGR01831 fabG_rel 3-oxoacyl-( 26.5 80 0.0017 21.0 2.8 22 68-89 4-25 (239)
290 PRK06124 gluconate 5-dehydroge 26.4 88 0.0019 21.1 3.0 28 64-91 13-40 (256)
291 PRK06172 short chain dehydroge 26.4 92 0.002 21.0 3.1 28 64-91 9-36 (253)
292 PF04726 Microvir_J: Microviru 26.4 34 0.00074 15.3 0.6 12 60-72 12-23 (24)
293 PRK05854 short chain dehydroge 26.4 74 0.0016 22.7 2.7 28 64-91 16-43 (313)
294 TIGR00730 conserved hypothetic 26.4 2.1E+02 0.0044 19.2 5.4 28 63-90 32-60 (178)
295 PRK06185 hypothetical protein; 26.3 91 0.002 22.9 3.3 27 72-98 108-135 (407)
296 PRK12746 short chain dehydroge 26.2 91 0.002 21.0 3.1 28 64-91 8-35 (254)
297 PRK08265 short chain dehydroge 26.2 83 0.0018 21.5 2.9 28 64-91 8-35 (261)
298 PRK06550 fabG 3-ketoacyl-(acyl 26.0 94 0.002 20.6 3.1 28 64-91 7-34 (235)
299 COG0578 GlpA Glycerol-3-phosph 26.0 55 0.0012 26.0 2.1 36 63-98 153-190 (532)
300 PF07488 Glyco_hydro_67M: Glyc 25.9 55 0.0012 24.4 2.0 21 75-95 177-197 (328)
301 PRK07097 gluconate 5-dehydroge 25.9 95 0.002 21.2 3.1 28 64-91 12-39 (265)
302 PRK07067 sorbitol dehydrogenas 25.8 94 0.002 21.0 3.1 28 64-91 8-35 (257)
303 PRK12827 short chain dehydroge 25.7 89 0.0019 20.8 2.9 27 65-91 9-35 (249)
304 PRK09135 pteridine reductase; 25.6 98 0.0021 20.6 3.1 28 64-91 8-35 (249)
305 PRK06123 short chain dehydroge 25.5 99 0.0021 20.7 3.1 26 65-90 5-30 (248)
306 PRK08303 short chain dehydroge 25.5 88 0.0019 22.4 3.0 28 64-91 10-37 (305)
307 PRK07803 sdhA succinate dehydr 25.5 85 0.0018 25.1 3.1 28 71-98 137-177 (626)
308 PRK08862 short chain dehydroge 25.5 98 0.0021 21.0 3.1 28 64-91 7-34 (227)
309 PRK05993 short chain dehydroge 25.2 99 0.0021 21.4 3.2 28 64-91 6-33 (277)
310 smart00822 PKS_KR This enzymat 25.2 82 0.0018 19.3 2.5 23 65-87 3-25 (180)
311 PRK07577 short chain dehydroge 25.1 91 0.002 20.6 2.9 27 65-91 6-32 (234)
312 PRK07832 short chain dehydroge 25.1 97 0.0021 21.3 3.1 25 66-90 4-28 (272)
313 TIGR01963 PHB_DH 3-hydroxybuty 25.1 1.1E+02 0.0023 20.5 3.2 27 65-91 4-30 (255)
314 PRK08589 short chain dehydroge 25.1 98 0.0021 21.3 3.1 28 64-91 8-35 (272)
315 TIGR02360 pbenz_hydroxyl 4-hyd 25.0 1E+02 0.0022 22.8 3.3 28 71-98 102-129 (390)
316 PRK06200 2,3-dihydroxy-2,3-dih 25.0 1E+02 0.0022 21.0 3.2 28 64-91 8-35 (263)
317 TIGR01829 AcAcCoA_reduct aceto 24.8 97 0.0021 20.5 3.0 26 65-90 3-28 (242)
318 PRK06138 short chain dehydroge 24.8 1E+02 0.0022 20.6 3.1 27 64-90 7-33 (252)
319 PRK07792 fabG 3-ketoacyl-(acyl 24.8 94 0.002 22.0 3.0 29 64-92 14-42 (306)
320 KOG3074 Transcriptional regula 24.8 81 0.0018 22.6 2.6 27 64-90 147-173 (263)
321 TIGR00725 conserved hypothetic 24.6 2.1E+02 0.0045 18.7 5.7 27 64-90 32-58 (159)
322 PRK08416 7-alpha-hydroxysteroi 24.6 1.1E+02 0.0023 20.9 3.2 28 64-91 10-37 (260)
323 PRK06171 sorbitol-6-phosphate 24.6 92 0.002 21.2 2.9 28 64-91 11-38 (266)
324 PF04852 DUF640: Protein of un 24.5 83 0.0018 20.4 2.4 23 68-90 91-113 (132)
325 PRK09291 short chain dehydroge 24.4 1E+02 0.0022 20.7 3.0 27 65-91 5-31 (257)
326 PRK12745 3-ketoacyl-(acyl-carr 24.4 1.1E+02 0.0023 20.6 3.2 26 65-90 5-30 (256)
327 PRK07308 flavodoxin; Validated 24.4 1E+02 0.0023 19.3 2.9 25 67-91 11-35 (146)
328 TIGR02685 pter_reduc_Leis pter 24.3 92 0.002 21.3 2.8 27 65-91 4-30 (267)
329 PRK12828 short chain dehydroge 24.3 90 0.0019 20.5 2.7 28 64-91 9-36 (239)
330 PRK12823 benD 1,6-dihydroxycyc 24.2 1E+02 0.0022 20.9 3.0 28 64-91 10-37 (260)
331 PRK13394 3-hydroxybutyrate deh 24.1 1E+02 0.0022 20.7 3.0 27 64-90 9-35 (262)
332 PRK12384 sorbitol-6-phosphate 24.0 1.1E+02 0.0024 20.7 3.2 26 65-90 5-30 (259)
333 PRK08277 D-mannonate oxidoredu 24.0 1.1E+02 0.0024 21.0 3.2 28 64-91 12-39 (278)
334 PRK12937 short chain dehydroge 24.0 1.1E+02 0.0024 20.4 3.1 27 64-90 7-33 (245)
335 PRK06935 2-deoxy-D-gluconate 3 23.9 1.1E+02 0.0024 20.7 3.2 27 64-90 17-43 (258)
336 PRK09186 flagellin modificatio 23.9 1E+02 0.0023 20.7 3.0 28 64-91 6-33 (256)
337 PRK07035 short chain dehydroge 23.9 1.1E+02 0.0024 20.6 3.1 27 64-90 10-36 (252)
338 PRK06500 short chain dehydroge 23.8 1.1E+02 0.0024 20.4 3.1 28 64-91 8-35 (249)
339 PRK08177 short chain dehydroge 23.8 1.1E+02 0.0024 20.3 3.1 27 65-91 4-30 (225)
340 PRK07102 short chain dehydroge 23.7 1.1E+02 0.0023 20.5 3.1 26 65-90 4-29 (243)
341 PRK07985 oxidoreductase; Provi 23.7 91 0.002 22.0 2.8 28 64-91 51-78 (294)
342 PRK00453 rpsF 30S ribosomal pr 23.7 1.2E+02 0.0027 18.3 3.1 20 71-90 19-38 (108)
343 COG1052 LdhA Lactate dehydroge 23.7 65 0.0014 23.8 2.0 26 70-95 153-178 (324)
344 PRK12429 3-hydroxybutyrate deh 23.7 1.1E+02 0.0024 20.5 3.1 28 64-91 6-33 (258)
345 PF10349 WWbp: WW-domain ligan 23.7 1E+02 0.0022 19.2 2.7 22 64-85 13-34 (116)
346 PRK05872 short chain dehydroge 23.7 1.1E+02 0.0023 21.6 3.1 28 64-91 11-38 (296)
347 PRK06197 short chain dehydroge 23.6 92 0.002 21.9 2.8 29 63-91 17-45 (306)
348 PLN02730 enoyl-[acyl-carrier-p 23.5 80 0.0017 22.9 2.5 28 64-91 11-40 (303)
349 PRK12829 short chain dehydroge 23.5 97 0.0021 20.9 2.8 29 63-91 12-40 (264)
350 COG3657 Uncharacterized protei 23.5 1.2E+02 0.0026 18.6 2.8 57 9-67 9-66 (100)
351 PRK05557 fabG 3-ketoacyl-(acyl 23.4 1.1E+02 0.0023 20.3 3.0 26 64-89 7-32 (248)
352 PRK08628 short chain dehydroge 23.4 93 0.002 21.0 2.7 28 64-91 9-36 (258)
353 PRK06483 dihydromonapterin red 23.4 1.1E+02 0.0024 20.4 3.0 27 65-91 5-31 (236)
354 TIGR02095 glgA glycogen/starch 23.3 1.1E+02 0.0024 23.1 3.3 26 66-91 14-39 (473)
355 KOG0725 Reductases with broad 23.3 1E+02 0.0022 22.0 2.9 31 63-93 9-39 (270)
356 TIGR01830 3oxo_ACP_reduc 3-oxo 23.2 1E+02 0.0022 20.3 2.9 12 78-89 39-50 (239)
357 PF12738 PTCB-BRCT: twin BRCT 23.2 60 0.0013 17.3 1.4 18 75-92 13-30 (63)
358 PRK07890 short chain dehydroge 23.1 95 0.0021 20.9 2.7 28 64-91 7-34 (258)
359 PF07384 DUF1497: Protein of u 23.1 99 0.0021 16.7 2.1 17 72-88 40-56 (59)
360 PRK00654 glgA glycogen synthas 23.1 1.1E+02 0.0024 23.2 3.3 23 68-90 16-38 (466)
361 PRK05786 fabG 3-ketoacyl-(acyl 23.0 90 0.0019 20.7 2.5 27 65-91 8-34 (238)
362 PRK08945 putative oxoacyl-(acy 23.0 1.1E+02 0.0024 20.5 3.0 27 64-90 14-40 (247)
363 COG3324 Predicted enzyme relat 23.0 89 0.0019 20.0 2.3 18 75-92 82-99 (127)
364 PF00732 GMC_oxred_N: GMC oxid 22.9 60 0.0013 22.6 1.7 33 66-98 186-219 (296)
365 PRK06703 flavodoxin; Provision 22.9 1.1E+02 0.0025 19.2 2.9 23 68-90 12-34 (151)
366 TIGR00106 uncharacterized prot 22.7 1.8E+02 0.0038 17.5 3.5 9 63-71 32-40 (97)
367 PRK08132 FAD-dependent oxidore 22.7 1E+02 0.0022 23.9 3.1 26 73-98 126-152 (547)
368 cd04955 GT1_like_6 This family 22.6 1.1E+02 0.0024 21.4 3.0 25 67-91 13-37 (363)
369 PRK08267 short chain dehydroge 22.6 1.2E+02 0.0026 20.6 3.1 27 65-91 4-30 (260)
370 PRK07074 short chain dehydroge 22.6 1.2E+02 0.0026 20.4 3.2 27 65-91 5-31 (257)
371 PF08310 LGFP: LGFP repeat; I 22.6 32 0.00069 18.3 0.2 25 64-88 27-51 (54)
372 PRK05565 fabG 3-ketoacyl-(acyl 22.5 1.3E+02 0.0027 20.0 3.2 28 64-91 7-34 (247)
373 PRK06617 2-octaprenyl-6-methox 22.5 1.1E+02 0.0025 22.3 3.2 28 71-98 103-131 (374)
374 PF02274 Amidinotransf: Amidin 22.5 79 0.0017 22.2 2.2 25 69-93 28-52 (281)
375 PRK12939 short chain dehydroge 22.4 1.2E+02 0.0026 20.2 3.1 27 65-91 10-36 (250)
376 PRK12826 3-ketoacyl-(acyl-carr 22.4 1.2E+02 0.0025 20.2 3.0 27 65-91 9-35 (251)
377 PRK07825 short chain dehydroge 22.2 1.1E+02 0.0024 20.9 2.9 28 64-91 7-34 (273)
378 PRK06125 short chain dehydroge 22.2 1.2E+02 0.0026 20.6 3.0 28 64-91 9-36 (259)
379 PRK12743 oxidoreductase; Provi 22.1 1.2E+02 0.0026 20.6 3.1 26 65-90 5-30 (256)
380 PRK08071 L-aspartate oxidase; 22.0 95 0.0021 24.1 2.7 26 72-98 130-155 (510)
381 PRK08278 short chain dehydroge 21.9 1.3E+02 0.0028 20.8 3.2 28 64-91 8-35 (273)
382 PF04845 PurA: PurA ssDNA and 21.8 1.1E+02 0.0024 21.6 2.7 27 63-89 124-150 (218)
383 PRK08251 short chain dehydroge 21.8 1.3E+02 0.0027 20.2 3.1 26 65-90 5-30 (248)
384 PRK05693 short chain dehydroge 21.7 1.2E+02 0.0026 20.8 3.0 27 65-91 4-30 (274)
385 PRK06953 short chain dehydroge 21.7 99 0.0021 20.5 2.5 27 65-91 4-30 (222)
386 PRK09242 tropinone reductase; 21.7 1.3E+02 0.0028 20.3 3.1 28 64-91 11-38 (257)
387 PRK07904 short chain dehydroge 21.6 1E+02 0.0022 21.1 2.6 27 65-91 11-38 (253)
388 PRK07775 short chain dehydroge 21.5 1.2E+02 0.0027 20.8 3.1 27 64-90 12-38 (274)
389 PRK09077 L-aspartate oxidase; 21.4 1.1E+02 0.0024 23.9 3.0 28 71-98 137-165 (536)
390 PF02878 PGM_PMM_I: Phosphoglu 21.2 1.5E+02 0.0033 18.4 3.2 24 68-91 50-73 (137)
391 PRK07576 short chain dehydroge 21.0 1.3E+02 0.0028 20.6 3.1 28 64-91 11-38 (264)
392 PRK07024 short chain dehydroge 21.0 1.2E+02 0.0025 20.6 2.8 27 65-91 5-31 (257)
393 PRK08401 L-aspartate oxidase; 20.9 1.2E+02 0.0026 23.1 3.1 27 71-98 119-145 (466)
394 PF04806 EspF: EspF protein re 20.9 1E+02 0.0023 16.1 1.9 14 73-86 34-47 (47)
395 PRK06720 hypothetical protein; 20.9 1.4E+02 0.003 19.6 3.0 28 64-91 18-45 (169)
396 cd03820 GT1_amsD_like This fam 20.8 1.5E+02 0.0033 19.9 3.4 25 67-91 11-35 (348)
397 PRK06079 enoyl-(acyl carrier p 20.8 1.1E+02 0.0024 20.8 2.7 29 64-92 9-39 (252)
398 KOG1335 Dihydrolipoamide dehyd 20.8 1.3E+02 0.0028 23.6 3.1 28 72-99 252-279 (506)
399 TIGR01832 kduD 2-deoxy-D-gluco 20.8 1.4E+02 0.003 20.0 3.1 26 65-90 8-33 (248)
400 PF07849 DUF1641: Protein of u 20.8 1.4E+02 0.003 15.1 2.7 22 10-33 11-32 (42)
401 PF13460 NAD_binding_10: NADH( 20.7 1.2E+02 0.0026 19.3 2.7 25 67-91 3-27 (183)
402 cd03792 GT1_Trehalose_phosphor 20.6 1.1E+02 0.0024 22.0 2.8 26 66-91 9-34 (372)
403 PRK06181 short chain dehydroge 20.5 1.5E+02 0.0032 20.1 3.2 26 65-90 4-29 (263)
404 PRK08217 fabG 3-ketoacyl-(acyl 20.5 1.4E+02 0.0031 19.8 3.1 26 65-90 8-33 (253)
405 cd04951 GT1_WbdM_like This fam 20.4 1E+02 0.0022 21.5 2.4 24 68-91 11-34 (360)
406 PRK12936 3-ketoacyl-(acyl-carr 20.4 1.4E+02 0.003 19.8 3.0 28 64-91 8-35 (245)
407 PRK05876 short chain dehydroge 20.4 1.4E+02 0.003 20.8 3.1 26 65-90 9-34 (275)
408 PRK09134 short chain dehydroge 20.3 1.5E+02 0.0032 20.1 3.2 28 64-91 11-38 (258)
409 PRK12770 putative glutamate sy 20.3 1.1E+02 0.0023 22.3 2.6 23 76-98 214-236 (352)
410 cd03064 TRX_Fd_NuoE TRX-like [ 20.3 98 0.0021 17.4 2.0 19 69-87 15-33 (80)
411 PRK07453 protochlorophyllide o 20.1 1.1E+02 0.0025 21.6 2.7 28 64-91 8-35 (322)
412 PRK07806 short chain dehydroge 20.1 1.2E+02 0.0025 20.4 2.6 26 65-90 9-34 (248)
413 COG3453 Uncharacterized protei 20.0 1.7E+02 0.0037 18.9 3.1 31 64-94 62-95 (130)
414 PRK12825 fabG 3-ketoacyl-(acyl 20.0 1.4E+02 0.0031 19.6 3.1 27 65-91 9-35 (249)
No 1
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.58 E-value=7.9e-15 Score=110.77 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=74.5
Q ss_pred cccCcHHHHHhcCC--CCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHHHHHh
Q 044011 7 KLLRPFSDIIDSLE--LKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEWYKPGCSLEYPLRGSGALVNALVRGIEK 84 (99)
Q Consensus 7 ~~~~s~~~~l~~~~--f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~p~GG~~~l~~aL~~~i~~ 84 (99)
+...|+.|++++ + |+|+.+|++++.++..+.+.||+++++.++.+++... ....|.++|+||+++|+++|++.+++
T Consensus 167 ~~~~s~~~~l~~-~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~GG~~~l~~aL~~~~~~ 244 (492)
T TIGR02733 167 LSLLTVADLLRL-CGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA-QAPHGLWHLHGSMQTLSDRLVEALKR 244 (492)
T ss_pred hhhhhHHHHHHH-hCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc-ccCCCceeecCcHHHHHHHHHHHHHh
Confidence 345899999998 5 8999999999988755777888888877765444332 22246799999999999999999999
Q ss_pred cCcEEEcCccceec
Q 044011 85 FGGRLSLRSRGKDS 98 (99)
Q Consensus 85 ~Gg~v~~~~~V~~I 98 (99)
+||+|++|++|++|
T Consensus 245 ~G~~i~~~~~V~~I 258 (492)
T TIGR02733 245 DGGNLLTGQRVTAI 258 (492)
T ss_pred cCCEEeCCceEEEE
Confidence 99999999999998
No 2
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.55 E-value=2e-14 Score=109.18 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=71.4
Q ss_pred cccccCcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHHHHHh
Q 044011 5 ATKLLRPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEWYKPGCSLEYPLRGSGALVNALVRGIEK 84 (99)
Q Consensus 5 l~~~~~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~p~GG~~~l~~aL~~~i~~ 84 (99)
+++...|+.+++++ +|+++.+|+.+..+. .+.+.||.+.++..+ +..+.....|++||+|||++|++||++.+++
T Consensus 162 ~~~~~~~~~~~~~~-~f~~~~~r~~~~~~~-~~~~~~p~~~~a~~~---~~~~~~~~~G~~~p~GG~~al~~aL~~~~~~ 236 (487)
T COG1233 162 LGFSLTSALDFFRG-RFGSELLRALLAYSA-VYGGAPPSTPPALYL---LLSHLGLSGGVFYPRGGMGALVDALAELARE 236 (487)
T ss_pred HHHhhhhHHHHHHH-HhcCHHHHHHHHHHH-HhcCCCCCchhHHHH---HHHHhcccCCeeeeeCCHHHHHHHHHHHHHH
Confidence 44577899999999 699999999998865 333355555553332 3333345668999999999999999999999
Q ss_pred cCcEEEcCccceecC
Q 044011 85 FGGRLSLRSRGKDSS 99 (99)
Q Consensus 85 ~Gg~v~~~~~V~~I~ 99 (99)
+||+|+++++|++|.
T Consensus 237 ~Gg~I~~~~~V~~I~ 251 (487)
T COG1233 237 HGGEIRTGAEVSQIL 251 (487)
T ss_pred cCCEEECCCceEEEE
Confidence 999999999999984
No 3
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.50 E-value=6.6e-14 Score=106.03 Aligned_cols=89 Identities=26% Similarity=0.426 Sum_probs=74.9
Q ss_pred cccCcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHHHHHhcC
Q 044011 7 KLLRPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEWYKPGCSLEYPLRGSGALVNALVRGIEKFG 86 (99)
Q Consensus 7 ~~~~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~p~GG~~~l~~aL~~~i~~~G 86 (99)
++..|+.|++++ +|+||.+|++|+.++.++...|+.++|+..++.++.... ..++++|.||++.++++|++.++++|
T Consensus 167 ~~~~s~~~~~~~-~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~--~~g~~~~~gG~~~l~~~L~~~~~~~G 243 (493)
T TIGR02730 167 YLPQNAGDIARR-YIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRH--YGGINYPKGGVGQIAESLVKGLEKHG 243 (493)
T ss_pred HhhccHHHHHHH-hcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccc--cceEecCCChHHHHHHHHHHHHHHCC
Confidence 346899999999 899999999999887555556667888877766554422 24689999999999999999999999
Q ss_pred cEEEcCccceec
Q 044011 87 GRLSLRSRGKDS 98 (99)
Q Consensus 87 g~v~~~~~V~~I 98 (99)
|+|+++++|++|
T Consensus 244 ~~i~~~~~V~~I 255 (493)
T TIGR02730 244 GQIRYRARVTKI 255 (493)
T ss_pred CEEEeCCeeeEE
Confidence 999999999987
No 4
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.39 E-value=1.3e-12 Score=98.85 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=72.4
Q ss_pred cccCcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHHHHHhcC
Q 044011 7 KLLRPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEWYKPGCSLEYPLRGSGALVNALVRGIEKFG 86 (99)
Q Consensus 7 ~~~~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~p~GG~~~l~~aL~~~i~~~G 86 (99)
....|+.|++++ +|+||.++.+++.++ .+.+.+|.++++.+.++.+..+ ..++++|.||+++++++|++.++++|
T Consensus 159 ~~~~s~~~~~~~-~~~~~~l~~~l~~~~-~~~g~~p~~~~~~~~l~~~~~~---~~g~~~~~gG~~~l~~al~~~~~~~G 233 (502)
T TIGR02734 159 LAWRSLYSKVAR-FFSDERLRQAFSFHA-LFLGGNPFRTPSIYALISALER---EWGVWFPRGGTGALVAAMAKLAEDLG 233 (502)
T ss_pred cCcCCHHHHHHh-hcCCHHHHHHhcccc-eeeccCcccchHHHHHHHHHHh---hceEEEcCCCHHHHHHHHHHHHHHCC
Confidence 457899999999 899999999998765 3456777777877665544443 24679999999999999999999999
Q ss_pred cEEEcCccceec
Q 044011 87 GRLSLRSRGKDS 98 (99)
Q Consensus 87 g~v~~~~~V~~I 98 (99)
++|+++++|++|
T Consensus 234 ~~i~~~~~V~~i 245 (502)
T TIGR02734 234 GELRLNAEVIRI 245 (502)
T ss_pred CEEEECCeEEEE
Confidence 999999999987
No 5
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.34 E-value=3e-12 Score=96.33 Aligned_cols=89 Identities=22% Similarity=0.263 Sum_probs=71.9
Q ss_pred CcHHHHHhc-CCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHHHHHhcCcE
Q 044011 10 RPFSDIIDS-LELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEWYKPGCSLEYPLRGSGALVNALVRGIEKFGGR 88 (99)
Q Consensus 10 ~s~~~~l~~-~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~p~GG~~~l~~aL~~~i~~~Gg~ 88 (99)
.+....++. |..+|+.++.+.+..++...++-...++...+-.++....++.+++.||+|||+++++|+++.++++|++
T Consensus 201 ap~~k~~~~~fesk~~ka~l~tDavi~~~asv~~pgt~yvllh~vlg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~Gae 280 (561)
T KOG4254|consen 201 APISKVLNDWFESKDLKATLATDAVIGLLASVHTPGTGYVLLHHVLGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAE 280 (561)
T ss_pred cchhhHHhhhhhccchhhhhhHHHHHHhhcccCCCCcHHHHHHHHHHhhcccCCcccCCCCChhHHHHHHHHHHHhccce
Confidence 344444444 3346777888888888666666656777777777887777888899999999999999999999999999
Q ss_pred EEcCccceec
Q 044011 89 LSLRSRGKDS 98 (99)
Q Consensus 89 v~~~~~V~~I 98 (99)
|.+++.|++|
T Consensus 281 I~tka~Vq~I 290 (561)
T KOG4254|consen 281 IFTKATVQSI 290 (561)
T ss_pred eeehhhhhhe
Confidence 9999999987
No 6
>PLN02487 zeta-carotene desaturase
Probab=98.95 E-value=5.9e-09 Score=80.97 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=73.2
Q ss_pred CcHHHHHhcCCCCCH-HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHh-CCC-CceeeeCCcHHH-HHHHHHHHHHhc
Q 044011 10 RPFSDIIDSLELKDP-FVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEWY-KPG-CSLEYPLRGSGA-LVNALVRGIEKF 85 (99)
Q Consensus 10 ~s~~~~l~~~~f~~~-~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~-~g~~~p~GG~~~-l~~aL~~~i~~~ 85 (99)
.|+.|++++ +..++ .++.+++.++....+.++++.++..+...+..+. +.. ..+.||+||+.. |++.+++.|+++
T Consensus 230 ~sv~~~l~r-~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~ 308 (569)
T PLN02487 230 ISFSDWFTS-HGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDR 308 (569)
T ss_pred CcHHHHHHH-hCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHc
Confidence 789999999 77766 6888999888777778989988887776655432 222 237999999995 999999999999
Q ss_pred CcEEEcCccceec
Q 044011 86 GGRLSLRSRGKDS 98 (99)
Q Consensus 86 Gg~v~~~~~V~~I 98 (99)
||+|+++++|++|
T Consensus 309 Gg~V~l~~~V~~I 321 (569)
T PLN02487 309 GGRFHLRWGCREI 321 (569)
T ss_pred CCEEEeCCceEEE
Confidence 9999999999987
No 7
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.95 E-value=7.9e-09 Score=75.67 Aligned_cols=90 Identities=12% Similarity=0.105 Sum_probs=64.2
Q ss_pred cCcHHHHHhcCCCCCHHHHH-HHHHHHHHhcCCCCCchhHHHHHHHHHHHhC---CCCceeeeCCcHHHHH-HHHHHHHH
Q 044011 9 LRPFSDIIDSLELKDPFVRN-WIDLLAFLLAGVKSNGILSAEMVYMFAEWYK---PGCSLEYPLRGSGALV-NALVRGIE 83 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~l~~-~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~g~~~p~GG~~~l~-~aL~~~i~ 83 (99)
..|+.|++++ ++.++.++. +++.++....+.++++.++..+...+...+. ...+.+||+||++++. ++|++.++
T Consensus 130 ~~s~~~~l~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~ 208 (419)
T TIGR03467 130 DTTVGDWLQA-AGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLD 208 (419)
T ss_pred CCCHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHH
Confidence 4799999999 665655554 6665543444567777777666544432111 1224799999998776 55999999
Q ss_pred hcCcEEEcCccceecC
Q 044011 84 KFGGRLSLRSRGKDSS 99 (99)
Q Consensus 84 ~~Gg~v~~~~~V~~I~ 99 (99)
++|++|++|++|++|.
T Consensus 209 ~~g~~i~~~~~V~~i~ 224 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIE 224 (419)
T ss_pred HcCCEEEcCCeeeEEE
Confidence 9999999999999983
No 8
>PRK07233 hypothetical protein; Provisional
Probab=98.94 E-value=6.3e-09 Score=76.71 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=67.9
Q ss_pred cCcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhCC-----CCceeeeCCcHHHHHHHHHHHHH
Q 044011 9 LRPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEWYKP-----GCSLEYPLRGSGALVNALVRGIE 83 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~g~~~p~GG~~~l~~aL~~~i~ 83 (99)
..|+.+++++ .+.++..+.++..++....+.++++.++..+...+...... ...+++|+||+++++++|++.++
T Consensus 131 ~~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~ 209 (434)
T PRK07233 131 KVPAEEWLRR-WSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIE 209 (434)
T ss_pred cccHHHHHHH-hcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHH
Confidence 4789999999 78777778888766545556777777776543323221110 12368999999999999999999
Q ss_pred hcCcEEEcCccceecC
Q 044011 84 KFGGRLSLRSRGKDSS 99 (99)
Q Consensus 84 ~~Gg~v~~~~~V~~I~ 99 (99)
+.|++|++|++|++|.
T Consensus 210 ~~g~~v~~~~~V~~i~ 225 (434)
T PRK07233 210 ARGGEIRLGTPVTSVV 225 (434)
T ss_pred hcCceEEeCCCeeEEE
Confidence 9999999999999973
No 9
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.80 E-value=4.7e-08 Score=74.04 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=58.1
Q ss_pred cCcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHH----HH---HHHhCCCCceeeeCCcHHHHHHHHHHH
Q 044011 9 LRPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVY----MF---AEWYKPGCSLEYPLRGSGALVNALVRG 81 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~----~~---~~~~~~~~g~~~p~GG~~~l~~aL~~~ 81 (99)
..|+.|++++ +--++..+.++....-........+.|+..... .+ ..+ .. .+..||+||+++|+++|++.
T Consensus 165 ~~T~~d~L~~-~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~-g~-~p~~yp~gG~g~L~qal~r~ 241 (443)
T PTZ00363 165 TMTMAQLYKK-FGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GK-SPFIYPLYGLGGLPQAFSRL 241 (443)
T ss_pred cCCHHHHHHH-hCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc-cC-CcceeeCCCHHHHHHHHHHH
Confidence 4799999999 556788887765432122111111222222221 11 222 11 24689999999999999999
Q ss_pred HHhcCcEEEcCccceec
Q 044011 82 IEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 82 i~~~Gg~v~~~~~V~~I 98 (99)
++.+||++++|++|++|
T Consensus 242 ~a~~Gg~~~L~~~V~~I 258 (443)
T PTZ00363 242 CAIYGGTYMLNTPVDEV 258 (443)
T ss_pred HHHcCcEEEcCCeEEEE
Confidence 99999999999999997
No 10
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.68 E-value=1.7e-07 Score=71.26 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=68.2
Q ss_pred cCcHHHHHhcCCCCCHH-HHHHHHHHHHHhcCCCCCchhHHHHHH---HHHHHhCCCCceeeeCCcHHH-HHHHHHHHHH
Q 044011 9 LRPFSDIIDSLELKDPF-VRNWIDLLAFLLAGVKSNGILSAEMVY---MFAEWYKPGCSLEYPLRGSGA-LVNALVRGIE 83 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~-l~~~l~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~g~~~p~GG~~~-l~~aL~~~i~ 83 (99)
..|+.+++++ +..++. ++.+++.++....+.+++++++..+.. .+.. .+.+..+.+++||.+. +.+.|++.++
T Consensus 153 ~~t~~~~l~~-~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~-~~~~s~~~~~~g~~~~~l~~pl~~~L~ 230 (474)
T TIGR02732 153 KISFAEWFLS-HGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAA-KTEASKLRMLKGSPDKYLTKPILEYIE 230 (474)
T ss_pred cccHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CCCcceeeeecCCcchhHHHHHHHHHH
Confidence 3889999999 677765 788888877566677878877766532 2222 2333467899999887 7788999999
Q ss_pred hcCcEEEcCccceec
Q 044011 84 KFGGRLSLRSRGKDS 98 (99)
Q Consensus 84 ~~Gg~v~~~~~V~~I 98 (99)
++||+|+++++|++|
T Consensus 231 ~~Gg~i~~~~~V~~I 245 (474)
T TIGR02732 231 ARGGKFHLRHKVREI 245 (474)
T ss_pred HCCCEEECCCEEEEE
Confidence 999999999999987
No 11
>PRK07208 hypothetical protein; Provisional
Probab=98.56 E-value=2.5e-07 Score=69.74 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=63.1
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHH---------HHHHHhCC---------------CCcee
Q 044011 10 RPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVY---------MFAEWYKP---------------GCSLE 65 (99)
Q Consensus 10 ~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~---------------~~g~~ 65 (99)
.|+.|++++ .|.++..+.++..++....+.++++.++..+.. .+...... .....
T Consensus 133 ~s~~e~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (479)
T PRK07208 133 DSFEDWVIN-RFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFR 211 (479)
T ss_pred CCHHHHHHH-hhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEe
Confidence 789999998 788888888887765444455556555433210 11101110 02467
Q ss_pred eeCCcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 66 YPLRGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 66 ~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
||+||+++++++|++.+++.|++|++|++|++|
T Consensus 212 ~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I 244 (479)
T PRK07208 212 YPKLGPGQLWETAAEKLEALGGKVVLNAKVVGL 244 (479)
T ss_pred CCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 999999999999999999999999999999987
No 12
>PLN02612 phytoene desaturase
Probab=98.51 E-value=8.4e-07 Score=68.91 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=62.4
Q ss_pred cCcHHHHHhcCCCCCHHH-HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhC--CCCceeeeCCcH-HHHHHHHHHHHHh
Q 044011 9 LRPFSDIIDSLELKDPFV-RNWIDLLAFLLAGVKSNGILSAEMVYMFAEWYK--PGCSLEYPLRGS-GALVNALVRGIEK 84 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~l-~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~p~GG~-~~l~~aL~~~i~~ 84 (99)
..|+.|++++ .-.++++ +.++..++......++++.++......+..+.. ++..+.++.|+. ..++++|++.+++
T Consensus 242 ~~Sv~e~l~~-~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~ 320 (567)
T PLN02612 242 GLSVKEWMRK-QGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQS 320 (567)
T ss_pred cCcHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHh
Confidence 3789999999 4445544 456665543333456666666655544443322 233467788876 7899999999999
Q ss_pred cCcEEEcCccceecC
Q 044011 85 FGGRLSLRSRGKDSS 99 (99)
Q Consensus 85 ~Gg~v~~~~~V~~I~ 99 (99)
+||+|++|++|++|.
T Consensus 321 ~G~~I~l~~~V~~I~ 335 (567)
T PLN02612 321 LGGEVRLNSRIKKIE 335 (567)
T ss_pred cCCEEEeCCeeeEEE
Confidence 999999999999983
No 13
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.42 E-value=3.3e-06 Score=63.31 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=60.7
Q ss_pred cCcHHHHHhcCCCCCHHHH-HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhCC--CCceeeeCCc-HHHHHHHHHHHHHh
Q 044011 9 LRPFSDIIDSLELKDPFVR-NWIDLLAFLLAGVKSNGILSAEMVYMFAEWYKP--GCSLEYPLRG-SGALVNALVRGIEK 84 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~l~-~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~p~GG-~~~l~~aL~~~i~~ 84 (99)
..|+.|++++ .-.++.++ .++..++-...+.+|.+.++..+...+..+... +....+..|+ +++++++|.+.+++
T Consensus 147 ~~s~~~~l~~-~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~ 225 (453)
T TIGR02731 147 KYTVTEWLRK-QGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITS 225 (453)
T ss_pred cCCHHHHHHH-cCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHh
Confidence 4789999998 55567755 465544433335566666666655444433321 1223455554 68899999999999
Q ss_pred cCcEEEcCccceec
Q 044011 85 FGGRLSLRSRGKDS 98 (99)
Q Consensus 85 ~Gg~v~~~~~V~~I 98 (99)
+|++|++|++|++|
T Consensus 226 ~g~~i~l~~~V~~I 239 (453)
T TIGR02731 226 RGGEVRLNSRLKEI 239 (453)
T ss_pred cCCEEeCCCeeEEE
Confidence 99999999999998
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.35 E-value=1.8e-06 Score=64.95 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=58.8
Q ss_pred cCcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHH-----------h--------CCCCceeeeCC
Q 044011 9 LRPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEW-----------Y--------KPGCSLEYPLR 69 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------~--------~~~~g~~~p~G 69 (99)
..|+.|++++ .+.++..+.++..++....+.++++.++......+..+ . .....+++++|
T Consensus 145 ~~sv~~~l~~-~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g 223 (463)
T PRK12416 145 DTSLALFLES-FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKG 223 (463)
T ss_pred CCCHHHHHHH-hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCC
Confidence 3689999999 78888777777765433334455555432211111000 0 11123578999
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
|+++|+++|++.+++ ++|++|++|++|.
T Consensus 224 G~~~l~~~l~~~l~~--~~i~~~~~V~~I~ 251 (463)
T PRK12416 224 GLSTIIDRLEEVLTE--TVVKKGAVTTAVS 251 (463)
T ss_pred CHHHHHHHHHHhccc--ccEEcCCEEEEEE
Confidence 999999999999976 7999999999873
No 15
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.25 E-value=2.7e-06 Score=63.20 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=58.6
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHH--------------h-----CCCCceeeeCCc
Q 044011 10 RPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEW--------------Y-----KPGCSLEYPLRG 70 (99)
Q Consensus 10 ~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~-----~~~~g~~~p~GG 70 (99)
.|+.|++++ .+.++..+.++..++....+.++++.++......+..+ . ..+..+++++||
T Consensus 141 ~s~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 219 (451)
T PRK11883 141 QSVGAFFRR-RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGG 219 (451)
T ss_pred cCHHHHHHH-hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccH
Confidence 689999999 78877778887755433334455555443321111100 0 012235689999
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
++.++++|++.+++. +|++|++|++|+
T Consensus 220 ~~~l~~~l~~~l~~~--~i~~~~~V~~i~ 246 (451)
T PRK11883 220 LQSLIEALEEKLPAG--TIHKGTPVTKID 246 (451)
T ss_pred HHHHHHHHHHhCcCC--eEEeCCEEEEEE
Confidence 999999999998765 899999999884
No 16
>PLN02576 protoporphyrinogen oxidase
Probab=97.91 E-value=3.3e-05 Score=58.54 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=58.3
Q ss_pred cCcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH---------------HHhC--------------
Q 044011 9 LRPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFA---------------EWYK-------------- 59 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~---------------~~~~-------------- 59 (99)
..|+.|++++ .|.++..+.+++.+.....+.++.+.++..+...+. ....
T Consensus 145 ~~sv~~~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~ 223 (496)
T PLN02576 145 EESVGEFVRR-HLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRL 223 (496)
T ss_pred CCcHHHHHHH-hcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccccccccc
Confidence 3789999999 898888888887665333444555544443221100 0000
Q ss_pred ---CCCceeeeCCcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 60 ---PGCSLEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 60 ---~~~g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
.+...+.++|||++|+++|++.+.+ ++|++|++|++|+
T Consensus 224 ~~~~~~~~~~~~gG~~~L~~~la~~l~~--~~i~l~~~V~~I~ 264 (496)
T PLN02576 224 PKPKGQTVGSFRGGLQTLPDALAKRLGK--DKVKLNWKVLSLS 264 (496)
T ss_pred ccccCCeeEeccchHHHHHHHHHHhhCc--CcEEcCCEEEEEE
Confidence 1122478899999999999987622 7899999999883
No 17
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.84 E-value=4.5e-05 Score=57.11 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=57.6
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH--HH----------H-hC--------------CCC
Q 044011 10 RPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMF--AE----------W-YK--------------PGC 62 (99)
Q Consensus 10 ~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~--~~----------~-~~--------------~~~ 62 (99)
.|+.|++++ .|.++..+.+++.++....+.++++.++..+...+ .. . .+ .+.
T Consensus 137 ~s~~e~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (462)
T TIGR00562 137 ESVEEFVRR-RFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQ 215 (462)
T ss_pred cCHHHHHHH-hcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCC
Confidence 789999999 78878788887765533333454444443322000 00 0 00 011
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
.+.+++||+++++++|++.+.+ ++|++|++|++|.
T Consensus 216 ~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~ 250 (462)
T TIGR00562 216 DFQTLATGLETLPEEIEKRLKL--TKVYKGTKVTKLS 250 (462)
T ss_pred ceEecchhHHHHHHHHHHHhcc--CeEEcCCeEEEEE
Confidence 1577899999999999999863 7899999999883
No 18
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.55 E-value=0.00014 Score=55.39 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=58.1
Q ss_pred cCcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHH-------HHHH----hC----C----CCceeeeCC
Q 044011 9 LRPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYM-------FAEW----YK----P----GCSLEYPLR 69 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~-------~~~~----~~----~----~~g~~~p~G 69 (99)
-.|+.+++++ .|-++.+.+++..+.-...+.+.+.-++...... .... .+ + ....++++|
T Consensus 134 d~sv~~f~r~-~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~g 212 (444)
T COG1232 134 DISVGEFIRR-RFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRG 212 (444)
T ss_pred CcCHHHHHHH-HHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCc
Confidence 3679999999 8998888888876543333344444333311100 0000 00 0 013578899
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
|++++.++|++.+++. |++|++|++|.
T Consensus 213 G~~~l~~al~~~l~~~---i~~~~~V~~i~ 239 (444)
T COG1232 213 GLQSLIEALAEKLEAK---IRTGTEVTKID 239 (444)
T ss_pred cHHHHHHHHHHHhhhc---eeecceeeEEE
Confidence 9999999999999998 99999999873
No 19
>PLN02529 lysine-specific histone demethylase 1
Probab=96.46 E-value=0.012 Score=47.67 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=27.3
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
..+.++||+++|+++|++.+ .|++|++|++|+
T Consensus 348 ~~~~i~GG~~~Li~aLA~~L-----~IrLnt~V~~I~ 379 (738)
T PLN02529 348 DHCFLAGGNWRLINALCEGV-----PIFYGKTVDTIK 379 (738)
T ss_pred ceEEECCcHHHHHHHHHhcC-----CEEcCCceeEEE
Confidence 45788999999999999754 499999999883
No 20
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.26 E-value=0.025 Score=43.27 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=53.6
Q ss_pred cccCcHHHHHhcCCCCCHHHHHHHHH-HHHHhcCCCCCchhHHHHHH----HHHHHhCC-CCceeeeCCcHHHHHHHHHH
Q 044011 7 KLLRPFSDIIDSLELKDPFVRNWIDL-LAFLLAGVKSNGILSAEMVY----MFAEWYKP-GCSLEYPLRGSGALVNALVR 80 (99)
Q Consensus 7 ~~~~s~~~~l~~~~f~~~~l~~~l~~-~~~~~~g~~~~~~~~~~~~~----~~~~~~~~-~~g~~~p~GG~~~l~~aL~~ 80 (99)
.-..|+.+++++|.+ ++.++.++.. .+ +.......+.|+....- .+....+. ..+.-||.-|.+.|++++.|
T Consensus 163 ~~~~~~~e~~~~f~L-~~~~~~~i~haia-L~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GELpQ~FcR 240 (438)
T PF00996_consen 163 PEKKTFQELLKKFGL-SENLIDFIGHAIA-LSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLGELPQAFCR 240 (438)
T ss_dssp TTTSBHHHHHHHTTS--HHHHHHHHHHTS--SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTHHHHHHHH
T ss_pred cccccHHHHHHhcCC-CHHHHHHHHHhhh-hccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccCCccHHHHHHH
Confidence 345789999998333 7788888752 22 11111101112223221 22222222 23678999999999999999
Q ss_pred HHHhcCcEEEcCccceec
Q 044011 81 GIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 81 ~i~~~Gg~v~~~~~V~~I 98 (99)
...=+||+..+|++|++|
T Consensus 241 l~AV~GG~Y~L~~~i~~i 258 (438)
T PF00996_consen 241 LSAVYGGTYMLNRPIDEI 258 (438)
T ss_dssp HHHHTT-EEESS--EEEE
T ss_pred HhhhcCcEEEeCCcccee
Confidence 999999999999999986
No 21
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.08 E-value=0.0066 Score=43.11 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=33.7
Q ss_pred CceeeeCCc---HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 62 CSLEYPLRG---SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 62 ~g~~~p~GG---~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.+++.|.+| ...++++|.+.+++.|++|+.+++|++|
T Consensus 134 ~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i 173 (358)
T PF01266_consen 134 GGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSI 173 (358)
T ss_dssp EEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEE
T ss_pred hhhcccccccccccchhhhhHHHHHHhhhhccccccccch
Confidence 467899999 9999999999999999999999999987
No 22
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=95.77 E-value=0.014 Score=43.65 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=55.2
Q ss_pred cccCcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHHHHHhcC
Q 044011 7 KLLRPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEWYKPGCSLEYPLRGSGALVNALVRGIEKFG 86 (99)
Q Consensus 7 ~~~~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~p~GG~~~l~~aL~~~i~~~G 86 (99)
.+..|..|++++..+..+..+.++..-.-.+.|.. .+.++...+..++- ...|+|-++||..+|++.|.+. .|
T Consensus 67 ~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla~---a~~gl~sV~GGN~qI~~~ll~~---S~ 139 (368)
T PF07156_consen 67 LTKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLAG---ATGGLWSVEGGNWQIFEGLLEA---SG 139 (368)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeeee---ccCCceEecCCHHHHHHHHHHH---cc
Confidence 45677788888756666666666655322233333 23344333322221 1346799999999999999874 88
Q ss_pred cEEEcCccceec
Q 044011 87 GRLSLRSRGKDS 98 (99)
Q Consensus 87 g~v~~~~~V~~I 98 (99)
.+| ++++|++|
T Consensus 140 A~v-l~~~Vt~I 150 (368)
T PF07156_consen 140 ANV-LNTTVTSI 150 (368)
T ss_pred CcE-ecceeEEE
Confidence 899 99999998
No 23
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.40 E-value=0.049 Score=40.86 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=33.5
Q ss_pred Cceeee-CCcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 62 CSLEYP-LRGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 62 ~g~~~p-~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.|-.|| -.-+..+.++|.+.+++.|++|+++++|++|
T Consensus 75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i 112 (376)
T TIGR03862 75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW 112 (376)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 355888 5789999999999999999999999999987
No 24
>PLN02676 polyamine oxidase
Probab=95.24 E-value=0.038 Score=42.46 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=29.4
Q ss_pred eeee--CCcHHHHHHHHHHHHHhc------CcEEEcCccceecC
Q 044011 64 LEYP--LRGSGALVNALVRGIEKF------GGRLSLRSRGKDSS 99 (99)
Q Consensus 64 ~~~p--~GG~~~l~~aL~~~i~~~------Gg~v~~~~~V~~I~ 99 (99)
.++. +||+++|+++|++.+.++ +.+|++|++|++|+
T Consensus 214 ~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~ 257 (487)
T PLN02676 214 EYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREIS 257 (487)
T ss_pred eEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEE
Confidence 3555 699999999999988655 25799999999984
No 25
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=95.19 E-value=0.026 Score=42.66 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=34.4
Q ss_pred CceeeeC-CcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 62 CSLEYPL-RGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 62 ~g~~~p~-GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
.|--+|. .....|.++|.+++++.|++|+++++|.+|.
T Consensus 100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~ 138 (408)
T COG2081 100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVE 138 (408)
T ss_pred CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEE
Confidence 3557888 9999999999999999999999999999873
No 26
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=94.80 E-value=0.1 Score=42.81 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=27.6
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
..++.+||+++|+++|++.+ .|++|++|++|+
T Consensus 428 ~~~~v~GG~~~Li~aLa~~L-----~I~ln~~V~~I~ 459 (808)
T PLN02328 428 DHCFIPGGNDTFVRELAKDL-----PIFYERTVESIR 459 (808)
T ss_pred eEEEECCcHHHHHHHHHhhC-----CcccCCeeEEEE
Confidence 35778899999999999876 299999999984
No 27
>PLN02268 probable polyamine oxidase
Probab=94.77 E-value=0.034 Score=41.50 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=25.6
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
.++.||+++++++|.+ |.+|++|++|++|.
T Consensus 194 ~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~ 223 (435)
T PLN02268 194 GLMVRGYDPVINTLAK-----GLDIRLNHRVTKIV 223 (435)
T ss_pred eeecCCHHHHHHHHhc-----cCceeCCCeeEEEE
Confidence 5788999999999976 45799999999873
No 28
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.51 E-value=0.061 Score=40.37 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=31.1
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.+|.++...+.++|.+.++++|++|+++++|++|
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l 149 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRI 149 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 5667888999999999999999999999999886
No 29
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=94.49 E-value=0.18 Score=39.89 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-++++.|.+.++++|+++++|++|++|
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL 252 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDI 252 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 689999999999999999999999987
No 30
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=93.86 E-value=0.067 Score=40.85 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=32.7
Q ss_pred CceeeeCCc---HHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 62 CSLEYPLRG---SGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 62 ~g~~~p~GG---~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
++++.|.+| .+.++.+|++.++++|++|++|++|+.|+
T Consensus 140 aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~ 180 (429)
T COG0579 140 AALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIE 180 (429)
T ss_pred eeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEE
Confidence 356777776 47889999999999999999999999874
No 31
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=93.85 E-value=0.049 Score=41.74 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.2
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
...+.|||+.|++|+++. .|..|+++++|.+|.
T Consensus 201 ~~~~~GGmd~la~Afa~q---l~~~I~~~~~V~rI~ 233 (450)
T COG1231 201 MLQRLGGMDQLAEAFAKQ---LGTRILLNEPVRRID 233 (450)
T ss_pred hhccCccHHHHHHHHHHH---hhceEEecCceeeEE
Confidence 466779999999999876 567899999999984
No 32
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=93.71 E-value=0.088 Score=37.44 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=32.8
Q ss_pred CceeeeCCc---HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 62 CSLEYPLRG---SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 62 ~g~~~p~GG---~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.+++.|.+| ...++.+|.+.++++|++++.+++|++|
T Consensus 124 ~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i 163 (337)
T TIGR02352 124 GAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHI 163 (337)
T ss_pred eEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEE
Confidence 467778787 4999999999999999999999999886
No 33
>PLN02568 polyamine oxidase
Probab=93.41 E-value=0.075 Score=41.52 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=29.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
...++||+++|.++|++.+. +++|++|++|++|.
T Consensus 234 ~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~ 267 (539)
T PLN02568 234 EITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIE 267 (539)
T ss_pred eEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEE
Confidence 56789999999999999885 56899999999883
No 34
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.32 E-value=0.1 Score=40.89 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=29.1
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
++..|| ++|+++|.+.++++|++|+++++|+++
T Consensus 211 ~~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~L 243 (564)
T PRK12845 211 RYAAGG-QALAAGLFAGVLRAGIPIWTETSLVRL 243 (564)
T ss_pred cccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEE
Confidence 345566 999999999999999999999999985
No 35
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.94 E-value=0.11 Score=38.39 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=32.3
Q ss_pred CceeeeCCcH---HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 62 CSLEYPLRGS---GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 62 ~g~~~p~GG~---~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.+++.|.+|. ..++++|.+.+++.|++++++++|++|
T Consensus 136 ~al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i 175 (393)
T PRK11728 136 GAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTAL 175 (393)
T ss_pred ceEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEE
Confidence 3567787774 899999999999999999999999876
No 36
>PLN03000 amine oxidase
Probab=92.90 E-value=0.4 Score=39.78 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=27.7
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
..+..+||++.|+++|++.+ .|++|++|++|+
T Consensus 372 ~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~ 403 (881)
T PLN03000 372 DHCFLPGGNGRLVQALAENV-----PILYEKTVQTIR 403 (881)
T ss_pred ceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEE
Confidence 35678899999999999887 399999999984
No 37
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.057 Score=41.01 Aligned_cols=85 Identities=20% Similarity=0.193 Sum_probs=53.0
Q ss_pred cHHHHHhcCCCCCHHHHHHHHH----HHH-HhcCCCCCchhHHH--HHHHHHHHhCCCCceeeeCCcHHHHHHHHHHHHH
Q 044011 11 PFSDIIDSLELKDPFVRNWIDL----LAF-LLAGVKSNGILSAE--MVYMFAEWYKPGCSLEYPLRGSGALVNALVRGIE 83 (99)
Q Consensus 11 s~~~~l~~~~f~~~~l~~~l~~----~~~-~~~g~~~~~~~~~~--~~~~~~~~~~~~~g~~~p~GG~~~l~~aL~~~i~ 83 (99)
|+++++.+ ++..+..+.+... ++. .+...|+.++---. ++-.++.+-. .+.-||..|.+.|++.++|.-.
T Consensus 167 tm~~~~~~-~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~--~~ylyP~yGlgEL~QgFaRlsA 243 (440)
T KOG1439|consen 167 TMREFLGK-FGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARYGK--SPYLYPLYGLGELPQGFARLSA 243 (440)
T ss_pred hHHHHHHH-hcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhcCC--CcceecccCcchhhHHHHHHhh
Confidence 78888888 5655555544421 110 01122322221111 1123333321 2357999999999999999999
Q ss_pred hcCcEEEcCccceec
Q 044011 84 KFGGRLSLRSRGKDS 98 (99)
Q Consensus 84 ~~Gg~v~~~~~V~~I 98 (99)
=.||+..+|+++.+|
T Consensus 244 vyGgTYMLn~pi~ei 258 (440)
T KOG1439|consen 244 VYGGTYMLNKPIDEI 258 (440)
T ss_pred ccCceeecCCceeee
Confidence 999999999999987
No 38
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=92.36 E-value=1.1 Score=34.09 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=49.9
Q ss_pred cCcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCC------Cc-eeeeCCcHHHHHHHHHHH
Q 044011 9 LRPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEWYKPG------CS-LEYPLRGSGALVNALVRG 81 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g-~~~p~GG~~~l~~aL~~~ 81 (99)
..|+.|+|++.+|..-+...++-.+.-..-..|..+.....+...+-...++| .+ +..+.||+.+-++.|..
T Consensus 150 ~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa- 228 (447)
T COG2907 150 DTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAA- 228 (447)
T ss_pred CccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhc-
Confidence 46899999986675554444443332111113333333322222222222232 12 34557999888877765
Q ss_pred HHhcCcEEEcCccceecC
Q 044011 82 IEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 82 i~~~Gg~v~~~~~V~~I~ 99 (99)
..+|+|+++++|.+|+
T Consensus 229 --~~~~~i~t~~~V~~l~ 244 (447)
T COG2907 229 --DIRGRIETRTPVCRLR 244 (447)
T ss_pred --cccceeecCCceeeee
Confidence 4678999999998874
No 39
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=92.05 E-value=0.19 Score=38.75 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=33.1
Q ss_pred CceeeeCCcH---HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 62 CSLEYPLRGS---GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 62 ~g~~~p~GG~---~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
++++.|.+|. ..++++|.+.+++.|++|+++++|++|
T Consensus 165 gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i 204 (483)
T TIGR01320 165 AANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNL 204 (483)
T ss_pred EEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 3678888874 899999999999999999999999886
No 40
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=91.74 E-value=0.28 Score=37.13 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=27.6
Q ss_pred ceeeeCC-cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 63 SLEYPLR-GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~G-G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+-.||.- -...+.++|.+.++++|++|+++++|++|
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i 135 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSI 135 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEE
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeee
Confidence 4578864 78999999999999999999999999987
No 41
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=91.67 E-value=0.25 Score=36.48 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=30.5
Q ss_pred ceeeeCCc---HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 63 SLEYPLRG---SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~GG---~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
++++|.+| ...++++|.+.+++.|++|+++++|++|
T Consensus 189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i 227 (416)
T PRK00711 189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGL 227 (416)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 45677554 5689999999999999999999999886
No 42
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=91.56 E-value=0.23 Score=38.42 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=31.5
Q ss_pred CceeeeCCc---HHHHHHHHHHHHHhcC-cEEEcCccceec
Q 044011 62 CSLEYPLRG---SGALVNALVRGIEKFG-GRLSLRSRGKDS 98 (99)
Q Consensus 62 ~g~~~p~GG---~~~l~~aL~~~i~~~G-g~v~~~~~V~~I 98 (99)
++++.|.|| ...++++|.+.++++| ++|+++++|++|
T Consensus 170 ~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I 210 (494)
T PRK05257 170 AATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDI 210 (494)
T ss_pred eEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEE
Confidence 356778776 5689999999999998 599999999876
No 43
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=91.31 E-value=0.26 Score=36.47 Aligned_cols=36 Identities=8% Similarity=0.096 Sum_probs=30.1
Q ss_pred ceeeeCCc---HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 63 SLEYPLRG---SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~GG---~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+++.|..| ...++++|.+.++++|++++.+++|++|
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i 223 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSI 223 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEE
Confidence 46677644 3677889999999999999999999887
No 44
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=91.25 E-value=0.17 Score=37.13 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=31.8
Q ss_pred CceeeeCCcH---HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 62 CSLEYPLRGS---GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 62 ~g~~~p~GG~---~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.++++|.+|. ..++++|.+.+++ |++|+.+++|.+|
T Consensus 122 gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i 160 (381)
T TIGR03197 122 GGLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSL 160 (381)
T ss_pred CceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEE
Confidence 3578888886 8999999999999 9999999999876
No 45
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=91.15 E-value=0.34 Score=36.78 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=31.4
Q ss_pred ceeeeCCc---HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 63 SLEYPLRG---SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~GG---~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+++.|.+| ...++++|.+.++++|++|+.+++|.+|
T Consensus 171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i 209 (460)
T TIGR03329 171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGL 209 (460)
T ss_pred EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEE
Confidence 46777776 4789999999999999999999999876
No 46
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=91.12 E-value=0.02 Score=41.24 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
++.+...+....+..|++|++|++|++|+
T Consensus 208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~ 236 (450)
T PF01593_consen 208 MGGLSLALALAAEELGGEIRLNTPVTRIE 236 (450)
T ss_dssp TTTTHHHHHHHHHHHGGGEESSEEEEEEE
T ss_pred ccchhHHHHHHHhhcCceeecCCcceecc
Confidence 55555666677778888999999999984
No 47
>PLN02976 amine oxidase
Probab=90.71 E-value=0.77 Score=40.40 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=27.3
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
.+.++||+++|+++|++.+ .|++|++|++|.
T Consensus 928 ~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId 958 (1713)
T PLN02976 928 HCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVS 958 (1713)
T ss_pred eEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEE
Confidence 4678999999999999876 399999999984
No 48
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=90.63 E-value=0.45 Score=36.01 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=29.6
Q ss_pred eeCCcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 66 YPLRGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 66 ~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
++.||...+.++|.+.+++.|++|+++++|++|
T Consensus 125 ~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l 157 (466)
T PRK08274 125 FFWGGGKALVNALYRSAERLGVEIRYDAPVTAL 157 (466)
T ss_pred eecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 456777899999999999999999999999886
No 49
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.48 E-value=0.41 Score=27.47 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 69 RGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 69 GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.-...+.+.+.+.+++.|.++++++.|++|
T Consensus 37 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 37 GFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp TSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred hcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 455678899999999999999999999987
No 50
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=89.21 E-value=0.61 Score=33.85 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=30.0
Q ss_pred ceeeeCCc---HHHHHHHHHHHHHhc-CcEEEcCccceecC
Q 044011 63 SLEYPLRG---SGALVNALVRGIEKF-GGRLSLRSRGKDSS 99 (99)
Q Consensus 63 g~~~p~GG---~~~l~~aL~~~i~~~-Gg~v~~~~~V~~I~ 99 (99)
++++|.+| ...++++|.+.+++. |++|+.+++|++|+
T Consensus 133 ~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~ 173 (365)
T TIGR03364 133 GLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVE 173 (365)
T ss_pred EEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEe
Confidence 56777666 467889999988876 99999999998873
No 51
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=88.68 E-value=0.59 Score=33.99 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=30.4
Q ss_pred ceeeeCCcH---HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 63 SLEYPLRGS---GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~GG~---~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+++.|.+|. ..++++|.+.++++|++++.+++|++|
T Consensus 133 ~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i 171 (380)
T TIGR01377 133 GLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEI 171 (380)
T ss_pred EEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEE
Confidence 456666663 688999999999999999999999886
No 52
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=87.10 E-value=0.78 Score=36.06 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=28.4
Q ss_pred eeeCCc----HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 65 EYPLRG----SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 65 ~~p~GG----~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
++|+|. ...+.++|.+.++++|++|+++++|.++
T Consensus 210 ~~~~g~~~~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~L 247 (578)
T PRK12843 210 SYARGTRLVMGNALIGRLLYSLRARGVRILTQTDVESL 247 (578)
T ss_pred hcCCCCcccccHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 345554 4579999999999999999999999885
No 53
>PRK07121 hypothetical protein; Validated
Probab=86.69 E-value=0.95 Score=34.63 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+...+.++|.+.+++.|++|+++++|++|
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l 203 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRL 203 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 56789999999999999999999999886
No 54
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=86.49 E-value=0.74 Score=35.67 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-...+.+.|.+.++++||+++++++|++|
T Consensus 171 ~l~~vvkni~~~l~~~G~ei~f~t~VeDi 199 (486)
T COG2509 171 ILPKVVKNIREYLESLGGEIRFNTEVEDI 199 (486)
T ss_pred chHHHHHHHHHHHHhcCcEEEeeeEEEEE
Confidence 45678899999999999999999999876
No 55
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=85.77 E-value=0.99 Score=33.43 Aligned_cols=29 Identities=31% Similarity=0.475 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+...+.+.|.+.++++|++|+++++|+++
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~L 167 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDL 167 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeE
Confidence 77899999999999999999999999876
No 56
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=85.56 E-value=0.84 Score=36.32 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=31.5
Q ss_pred CceeeeCCcH---HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 62 CSLEYPLRGS---GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 62 ~g~~~p~GG~---~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.++++|.+|. ..++++|.+.+++ |++|+.+++|++|
T Consensus 395 ~g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i 433 (662)
T PRK01747 395 GGIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARL 433 (662)
T ss_pred CcEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEE
Confidence 4678888875 6899999999999 9999999999876
No 57
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=84.82 E-value=1.3 Score=33.80 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 69 RGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 69 GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
.-...+.+...+.++++|.+|+++++|++|.
T Consensus 206 ~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~ 236 (405)
T COG1252 206 MFPPKLSKYAERALEKLGVEVLLGTPVTEVT 236 (405)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEcCCceEEEC
Confidence 3456788899999999999999999999984
No 58
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=84.10 E-value=1.3 Score=34.46 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=30.6
Q ss_pred CceeeeCCc-H---HHHHHHHHHHHHh----cC--cEEEcCccceec
Q 044011 62 CSLEYPLRG-S---GALVNALVRGIEK----FG--GRLSLRSRGKDS 98 (99)
Q Consensus 62 ~g~~~p~GG-~---~~l~~aL~~~i~~----~G--g~v~~~~~V~~I 98 (99)
++++.|.+| . .+++++|++.+++ .| ++|+++++|++|
T Consensus 197 ~Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I 243 (497)
T PTZ00383 197 AALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNI 243 (497)
T ss_pred EEEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEE
Confidence 356788654 3 7899999999999 88 678999999887
No 59
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=83.88 E-value=1.5 Score=34.33 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.++|.+.++++|++|+++++|+++
T Consensus 213 G~~l~~~L~~~~~~~Gv~i~~~~~v~~l 240 (574)
T PRK12842 213 GNALAARLAKSALDLGIPILTGTPAREL 240 (574)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 3789999999999999999999999886
No 60
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=83.70 E-value=1.4 Score=32.64 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=28.8
Q ss_pred ceeeeCCcH---HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 63 SLEYPLRGS---GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~GG~---~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+++.|.+|. ..++.+|.+.++++|++++.+++|++|
T Consensus 171 a~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i 209 (407)
T TIGR01373 171 GLLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGF 209 (407)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 344455553 478888999999999999999999886
No 61
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=83.13 E-value=1.5 Score=34.47 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...++++|.+.++++|++|+++++|++|
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l 243 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPAREL 243 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEE
Confidence 4678999999999999999999999885
No 62
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=82.93 E-value=1.8 Score=33.69 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=30.5
Q ss_pred CceeeeCCc---HHHHHHHHHHHHHh-cCcEEEcCccceec
Q 044011 62 CSLEYPLRG---SGALVNALVRGIEK-FGGRLSLRSRGKDS 98 (99)
Q Consensus 62 ~g~~~p~GG---~~~l~~aL~~~i~~-~Gg~v~~~~~V~~I 98 (99)
++++.|.|+ ..+++++|.+.+++ .|++|+++++|..|
T Consensus 171 ~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I 211 (497)
T PRK13339 171 AASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDL 211 (497)
T ss_pred eEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEE
Confidence 357888776 46889999999965 59999999999876
No 63
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=82.80 E-value=1.6 Score=33.25 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 69 RGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 69 GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.|+ .+.++|.+.+++.|++|+++++|.++
T Consensus 257 pG~-rL~~aL~~~l~~~Gv~I~~g~~V~~v 285 (422)
T PRK05329 257 PGL-RLQNALRRAFERLGGRIMPGDEVLGA 285 (422)
T ss_pred chH-HHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 455 89999999999999999999999886
No 64
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=82.71 E-value=1.5 Score=35.74 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=33.9
Q ss_pred CCceeeeCCcH---HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 61 GCSLEYPLRGS---GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 61 ~~g~~~p~GG~---~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.+++|.|.-|. ..++.||++.++++|+.|..||+|++|
T Consensus 173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i 213 (856)
T KOG2844|consen 173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGL 213 (856)
T ss_pred eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceE
Confidence 35688888774 799999999999999999999999987
No 65
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=80.78 E-value=2.1 Score=33.00 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=29.9
Q ss_pred ceeeeCCc---HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 63 SLEYPLRG---SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~GG---~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
++++| .| ...++.++++.++++|++|+.+++|++|
T Consensus 117 a~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i 154 (516)
T TIGR03377 117 AVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGL 154 (516)
T ss_pred EEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 45677 45 4788999999999999999999999886
No 66
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=80.61 E-value=2 Score=33.45 Aligned_cols=29 Identities=34% Similarity=0.336 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhc-CcEEEcCccceecC
Q 044011 71 SGALVNALVRGIEKF-GGRLSLRSRGKDSS 99 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~-Gg~v~~~~~V~~I~ 99 (99)
.+++++.|++.+++. |.+++++++|++|.
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~ 209 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIK 209 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeE
Confidence 589999999999999 99999999999873
No 67
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=79.62 E-value=2.3 Score=32.48 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..+.++|.+.++++||++..+++|.+|
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i 289 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRA 289 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEE
Confidence 3678899999999999999999999875
No 68
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=79.58 E-value=2.5 Score=33.13 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 69 RGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 69 GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+....|.+.|.+.++++|++|+++++|++|
T Consensus 205 ~~G~~l~~~l~~~~~~~gv~i~~~~~v~~L 234 (557)
T PRK12844 205 TNGAALIGRMLEAALAAGVPLWTNTPLTEL 234 (557)
T ss_pred cCcHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 345678999999999999999999999885
No 69
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=78.94 E-value=4.1 Score=30.45 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=29.6
Q ss_pred eeeC-CcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 65 EYPL-RGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 65 ~~p~-GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.||. .....+.++|.+.+++.|++|+++++|++|
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i 131 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSI 131 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 4554 457899999999999999999999999886
No 70
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=77.66 E-value=2.6 Score=32.51 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.|.+.++++|++|+++++|++|
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l 216 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKI 216 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEE
Confidence 479999999999999999999999886
No 71
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=77.19 E-value=3.3 Score=31.03 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.|.+.+++.|++|+++++|++|
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l 156 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDL 156 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEe
Confidence 3679999999999999999999999986
No 72
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=76.16 E-value=2.7 Score=27.65 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
-..+.+-|.+.++++|.+|+++++|++|+
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~ 109 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVR 109 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEE
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEE
Confidence 45588999999999999999999999874
No 73
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=76.05 E-value=3.9 Score=28.89 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.|.+.++++|++|+++++|+++
T Consensus 103 ~~~l~~~L~~~A~~~Gv~I~~~t~V~dl 130 (257)
T PRK04176 103 SVEAAAKLAAAAIDAGAKIFNGVSVEDV 130 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCceecee
Confidence 4688999999999999999999999876
No 74
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=74.13 E-value=3.8 Score=32.02 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=29.0
Q ss_pred ceeeeCCc--HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 63 SLEYPLRG--SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~GG--~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
++++|.|- -..++.++++.++++|++++++++|++|
T Consensus 138 a~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i 175 (546)
T PRK11101 138 AVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGL 175 (546)
T ss_pred EEEecCcEECHHHHHHHHHHHHHhCCCEEEeccEEEEE
Confidence 45677432 2578888999999999999999999876
No 75
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=73.41 E-value=4.5 Score=29.30 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=28.9
Q ss_pred ceeeeCCcH---HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 63 SLEYPLRGS---GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~GG~---~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+++.|.+|. ..++.++.+.++++|++++.+++|++|
T Consensus 137 a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i 175 (376)
T PRK11259 137 ALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAI 175 (376)
T ss_pred EEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEE
Confidence 456666554 567888888899999999999999886
No 76
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=72.55 E-value=1.7 Score=29.25 Aligned_cols=45 Identities=13% Similarity=0.001 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCceeeeCCcHH
Q 044011 20 ELKDPFVRNWIDLLAFLLAGVKSNGILSAEMVYMFAEWYKPGCSLEYPLRGSG 72 (99)
Q Consensus 20 ~f~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~p~GG~~ 72 (99)
|++|+..+..| .-|.||..|+-.....-..... --.||||.||+-
T Consensus 86 Y~~D~eT~~~L------~~G~pp~~TrLG~~Ll~~GFtw--fKdWYfPEG~~E 130 (170)
T PF06557_consen 86 YVEDRETRRQL------QRGVPPAETRLGFSLLKAGFTW--FKDWYFPEGGME 130 (170)
T ss_dssp -TT-HHHHHHH------HTT--GGGSHHHHHHHTTT--E--EEEEE--TTTST
T ss_pred EecCHHHHHHH------HcCCCcccchhHHHHHhCCcEE--EeeeeccCcccc
Confidence 45677666654 3578888888766543222211 124799999973
No 77
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=72.34 E-value=4.7 Score=31.89 Aligned_cols=29 Identities=24% Similarity=0.120 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+..++...|.+.+++.|++|+++++|+++
T Consensus 211 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~L 239 (584)
T PRK12835 211 IGQSLVARLRLALKDAGVPLWLDSPMTEL 239 (584)
T ss_pred ccHHHHHHHHHHHHhCCceEEeCCEEEEE
Confidence 45678889999999999999999999986
No 78
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=71.95 E-value=4.8 Score=31.52 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 69 RGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 69 GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+....+.+.|.+.+++.|++|+++++|++|
T Consensus 205 ~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l 234 (557)
T PRK07843 205 GMGQALAAGLRIGLQRAGVPVLLNTPLTDL 234 (557)
T ss_pred cCcHHHHHHHHHHHHcCCCEEEeCCEEEEE
Confidence 345678999999999999999999999986
No 79
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=71.21 E-value=5.7 Score=29.85 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
..+.+.+.+.++++|.+|+++++|++|.
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~ 255 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVL 255 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEe
Confidence 4688999999999999999999999873
No 80
>PRK06847 hypothetical protein; Provisional
Probab=70.58 E-value=5.3 Score=28.99 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.|.+.+++.|++|+++++|++|
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i 133 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAI 133 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEE
Confidence 578899999999999999999999876
No 81
>PRK12839 hypothetical protein; Provisional
Probab=70.36 E-value=5.9 Score=31.27 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..++.+|.+.+++.|++|+++++|++|
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~L 240 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSL 240 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 3678999999999999999999999886
No 82
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=70.05 E-value=5.7 Score=27.38 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+++.|++++++++|++|
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~ 117 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDV 117 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeE
Confidence 468889999999999999999999875
No 83
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=68.78 E-value=7.1 Score=28.61 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.|.+.+++.|++|+.+++|++|
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i 137 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDF 137 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEE
Confidence 689999999999999999999999876
No 84
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=68.43 E-value=31 Score=26.91 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
---.++.-|...+++||+.+.++++|+.|.
T Consensus 225 QYeSlvlPli~yL~~H~Vdf~~~~~Vedi~ 254 (587)
T COG4716 225 QYESLVLPLITYLKSHGVDFTYDQKVEDID 254 (587)
T ss_pred hHHHHHHHHHHHHHHcCCceEeccEEeeee
Confidence 345788899999999999999999999873
No 85
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=68.36 E-value=12 Score=29.28 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=52.0
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchhHH-----HHHHHHHHHhCCCCceeeeCCcHHH-HHHHHHHHHH
Q 044011 10 RPFSDIIDSLELKDPFVRNWIDLLAFLLAGVKSNGILSA-----EMVYMFAEWYKPGCSLEYPLRGSGA-LVNALVRGIE 83 (99)
Q Consensus 10 ~s~~~~l~~~~f~~~~l~~~l~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~g~~~p~GG~~~-l~~aL~~~i~ 83 (99)
.|..|++++..-.....++.+...++-..=.+++..++. +..+++.. ....=....+|+... +...+.+.++
T Consensus 149 ~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~--~~~~i~~~~~g~~~E~~~~p~~~yi~ 226 (485)
T COG3349 149 ISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVT--LEASILRNLRGSPDEVLLQPWTEYIP 226 (485)
T ss_pred ccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhc--cCcchhhhhcCCCcceeeehhhhhcc
Confidence 578888887334455566666655422222344444442 22222221 122223556677654 5678899999
Q ss_pred hcCcEEEcCccceec
Q 044011 84 KFGGRLSLRSRGKDS 98 (99)
Q Consensus 84 ~~Gg~v~~~~~V~~I 98 (99)
+.|.+++++.+|.+|
T Consensus 227 ~~G~~v~~~~pv~~l 241 (485)
T COG3349 227 ERGRKVHADYPVKEL 241 (485)
T ss_pred ccCceeeccceeeee
Confidence 999999999999986
No 86
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=67.22 E-value=7.9 Score=28.43 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.++|.+.+++.|++++.+++|++|
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i 139 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVAL 139 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEE
Confidence 578999999999999999999999876
No 87
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=67.08 E-value=8.1 Score=23.94 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=24.0
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEcCcc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSLRSR 94 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~ 94 (99)
.++.+|+ +-+.+-+.++.+||+|..++.
T Consensus 81 ~f~F~~~---v~~kv~eY~e~~G~~Vii~t~ 108 (109)
T PF15647_consen 81 YFWFKGE---VHDKVKEYIERYGGKVIIDTK 108 (109)
T ss_pred EEEeccc---ccHHHHHHHHHcCcEEEecCC
Confidence 3777888 889999999999999998763
No 88
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=66.68 E-value=8.1 Score=29.04 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+++.+.+.+++.|.+++++++|++|
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i 225 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERI 225 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 678899999999999999999999886
No 89
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=66.66 E-value=3.9 Score=30.76 Aligned_cols=32 Identities=13% Similarity=-0.030 Sum_probs=24.0
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.++|++|..++.++|.+. .+-+|++|+.++.|
T Consensus 190 q~~P~~Gyt~~~~~ml~~---~~i~v~l~~~~~~~ 221 (377)
T TIGR00031 190 QGLPKGGYTKLFEKMLDH---PLIDVKLNCHINLL 221 (377)
T ss_pred cccccccHHHHHHHHHhc---CCCEEEeCCcccee
Confidence 389999988899888743 45569999766544
No 90
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=66.27 E-value=8.1 Score=27.28 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.|.+.++++|++++.+++|+++
T Consensus 99 ~~el~~~L~~~a~e~GV~I~~~t~V~dl 126 (254)
T TIGR00292 99 SAEFISTLASKALQAGAKIFNGTSVEDL 126 (254)
T ss_pred HHHHHHHHHHHHHHcCCEEECCcEEEEE
Confidence 3688999999999999999999999875
No 91
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=66.05 E-value=8.6 Score=28.77 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.++++|.+++++++|++|
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i 217 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSL 217 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 578889999999999999999999886
No 92
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=65.00 E-value=9.1 Score=29.07 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..+.+.+.+.+++.|.+|+++++|++|
T Consensus 212 d~~~~~~l~~~l~~~gV~i~~~~~v~~i 239 (466)
T PRK07818 212 DAEVSKEIAKQYKKLGVKILTGTKVESI 239 (466)
T ss_pred CHHHHHHHHHHHHHCCCEEEECCEEEEE
Confidence 3568899999999999999999999886
No 93
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=64.77 E-value=6.3 Score=30.14 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=33.2
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+.-||+=|.+.|++.+++.-.-.||+..+|+++.+|
T Consensus 220 pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ei 255 (434)
T COG5044 220 PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEI 255 (434)
T ss_pred cceeeccCchhhhHHHHHhhhccCceeecCcchhhh
Confidence 357899889999999999999999999999999887
No 94
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=63.25 E-value=10 Score=28.65 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.++++|.+++++++|++|
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i 239 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKV 239 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 578889999999999999999999887
No 95
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=63.06 E-value=9.4 Score=27.59 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcC-cEEEcCccceec
Q 044011 72 GALVNALVRGIEKFG-GRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~G-g~v~~~~~V~~I 98 (99)
..+.+.|.+.+++.| ++|+.+++|++|
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i 133 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVEL 133 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEE
Confidence 578999999999999 999999999886
No 96
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=62.98 E-value=9.3 Score=29.58 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...++.++++..+++|++++.+++|++|
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i 181 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSA 181 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 3678888999999999999999999886
No 97
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=62.97 E-value=10 Score=28.57 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i 242 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKV 242 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEE
Confidence 578899999999999999999999886
No 98
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=62.52 E-value=9.7 Score=30.44 Aligned_cols=27 Identities=15% Similarity=-0.075 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..++.+|++.++++|++|+.+++|.+|
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l 258 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSL 258 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEE
Confidence 589999999999999999999999886
No 99
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=61.93 E-value=10 Score=29.77 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-+++.=|.+.++++|+++++|++|+.|
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di 233 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDI 233 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEE
Confidence 478888999999999999999999976
No 100
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=61.29 E-value=11 Score=28.38 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i 215 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAI 215 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence 467889999999999999999999886
No 101
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=61.20 E-value=12 Score=29.47 Aligned_cols=29 Identities=14% Similarity=-0.035 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.-..|.++|.+.+++.|.+|+.+++|.++
T Consensus 117 ~G~~i~~~L~~~~~~~gi~i~~~~~~~~L 145 (565)
T TIGR01816 117 TGHAILHTLYQQNLKADTSFFNEYFALDL 145 (565)
T ss_pred chHHHHHHHHHHHHhCCCEEEeccEEEEE
Confidence 34579999999999999999999999875
No 102
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=61.16 E-value=12 Score=27.16 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.++++|.+++++++|++|
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i 217 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRG 217 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEE
Confidence 457888999999999999999999887
No 103
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=60.95 E-value=12 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+|+++++|++|
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i 237 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGL 237 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEE
Confidence 568889999999999999999999886
No 104
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=60.92 E-value=11 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..+.+.+.+.+++.|.+++++++|++|
T Consensus 220 ~~~~~~~l~~~l~~~gI~i~~~~~v~~i 247 (472)
T PRK05976 220 DAELSKEVARLLKKLGVRVVTGAKVLGL 247 (472)
T ss_pred CHHHHHHHHHHHHhcCCEEEeCcEEEEE
Confidence 3568889999999999999999999886
No 105
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=60.62 E-value=22 Score=27.77 Aligned_cols=37 Identities=19% Similarity=0.102 Sum_probs=31.2
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
+++-.+||+..++++|.+.+.+....|.+..++.-++
T Consensus 240 ~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~s 276 (491)
T KOG1276|consen 240 TMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNS 276 (491)
T ss_pred chhhhhhhHhHhHHHHHHHhcccchhhhccccccccc
Confidence 3566789999999999999999998888888776553
No 106
>PRK06116 glutathione reductase; Validated
Probab=60.34 E-value=12 Score=28.11 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.+.+.+++.|.+++++++|++|
T Consensus 207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i 234 (450)
T PRK06116 207 DPDIRETLVEEMEKKGIRLHTNAVPKAV 234 (450)
T ss_pred CHHHHHHHHHHHHHCCcEEECCCEEEEE
Confidence 3578889999999999999999999887
No 107
>PRK08275 putative oxidoreductase; Provisional
Probab=59.28 E-value=14 Score=28.92 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
....+.+.|.+.+++.|.+|+.+++|++|
T Consensus 135 ~G~~i~~~L~~~~~~~gv~i~~~~~v~~L 163 (554)
T PRK08275 135 EGHDIKKVLYRQLKRARVLITNRIMATRL 163 (554)
T ss_pred ChHHHHHHHHHHHHHCCCEEEcceEEEEE
Confidence 34578999999999999999999999886
No 108
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=59.14 E-value=12 Score=28.84 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..++.++++.++++|++++.+++|++|
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i 181 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSA 181 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEE
Confidence 577788889999999999999999875
No 109
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=58.76 E-value=14 Score=27.88 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i 237 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAV 237 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 578889999999999999999999876
No 110
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=58.31 E-value=14 Score=26.83 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
...+.+.|.+.+++. |++++.+++|++|
T Consensus 104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i 132 (382)
T TIGR01984 104 LADLGQALLSRLALLTNIQLYCPARYKEI 132 (382)
T ss_pred cHHHHHHHHHHHHhCCCcEEEcCCeEEEE
Confidence 467999999999985 9999999999986
No 111
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=57.52 E-value=15 Score=27.70 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+++.|++|+.+++|++|
T Consensus 108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i 134 (428)
T PRK10157 108 SKFDAWLMEQAEEAGAQLITGIRVDNL 134 (428)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEE
Confidence 456677999999999999999999875
No 112
>PRK14727 putative mercuric reductase; Provisional
Probab=57.22 E-value=15 Score=28.16 Aligned_cols=28 Identities=18% Similarity=0.042 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.+.+.+++.|.+++++++|++|
T Consensus 227 d~~~~~~l~~~L~~~GV~i~~~~~V~~i 254 (479)
T PRK14727 227 DPLLGETLTACFEKEGIEVLNNTQASLV 254 (479)
T ss_pred hHHHHHHHHHHHHhCCCEEEcCcEEEEE
Confidence 4568889999999999999999999876
No 113
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=57.06 E-value=15 Score=28.41 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.++++|.+++++++|++|
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i 257 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKV 257 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence 678899999999999999999999876
No 114
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=56.96 E-value=16 Score=27.11 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.++++|.+++++++|++|
T Consensus 186 ~~~~~~l~~~l~~~GV~i~~~~~V~~i 212 (396)
T PRK09754 186 PPVQRYLLQRHQQAGVRILLNNAIEHV 212 (396)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEE
Confidence 456788899999999999999999886
No 115
>PRK06175 L-aspartate oxidase; Provisional
Probab=56.29 E-value=22 Score=26.95 Aligned_cols=34 Identities=9% Similarity=-0.112 Sum_probs=26.3
Q ss_pred eeeCC-cHHHHHHHHHHHHHh-cCcEEEcCccceec
Q 044011 65 EYPLR-GSGALVNALVRGIEK-FGGRLSLRSRGKDS 98 (99)
Q Consensus 65 ~~p~G-G~~~l~~aL~~~i~~-~Gg~v~~~~~V~~I 98 (99)
.++.. ....+.++|.+.+++ .|.+|+++++|.+|
T Consensus 120 ~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~L 155 (433)
T PRK06175 120 VHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDI 155 (433)
T ss_pred EecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeee
Confidence 34443 345789999988876 59999999999886
No 116
>PRK06370 mercuric reductase; Validated
Probab=55.96 E-value=16 Score=27.67 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i 238 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRV 238 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 457788999999999999999999887
No 117
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=55.86 E-value=18 Score=26.14 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=28.6
Q ss_pred ceeeeCCcH---HHHHHHHHHHHHhcC-cEEEcCccceec
Q 044011 63 SLEYPLRGS---GALVNALVRGIEKFG-GRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~GG~---~~l~~aL~~~i~~~G-g~v~~~~~V~~I 98 (99)
+++.|.+|. ..++++|.+.++++| ..+..+++|..+
T Consensus 144 a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~ 183 (387)
T COG0665 144 GLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSL 183 (387)
T ss_pred eEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEE
Confidence 457777776 689999999999999 566668888765
No 118
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=55.72 E-value=12 Score=28.32 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
.+=.+++.+.++++||.++-|.+|..|+
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~ 180 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIK 180 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEe
Confidence 4556789999999999999999998764
No 119
>PRK14694 putative mercuric reductase; Provisional
Probab=55.55 E-value=17 Score=27.71 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.+.+.+++.|.+++++++|++|
T Consensus 217 ~~~~~~~l~~~l~~~GI~v~~~~~v~~i 244 (468)
T PRK14694 217 DPAVGEAIEAAFRREGIEVLKQTQASEV 244 (468)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 3678999999999999999999999876
No 120
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=55.52 E-value=16 Score=27.79 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+|+++++|++|
T Consensus 215 ~~~~~~l~~~l~~~gV~i~~~~~V~~i 241 (466)
T PRK06115 215 TETAKTLQKALTKQGMKFKLGSKVTGA 241 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEECcEEEEE
Confidence 568899999999999999999999886
No 121
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=55.43 E-value=16 Score=27.23 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i 205 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSI 205 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 357788899999999999999999887
No 122
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=55.11 E-value=16 Score=28.24 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
..++.++|.+.+++. |.+|+++++|+++
T Consensus 172 G~~l~~~l~~~~~~~~gv~i~~~t~~~~L 200 (513)
T PRK12837 172 GRALIGRFLAALARFPNARLRLNTPLVEL 200 (513)
T ss_pred cHHHHHHHHHHHHhCCCCEEEeCCEEEEE
Confidence 456788888887775 9999999999875
No 123
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.87 E-value=20 Score=28.17 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
....+.++|.+.+++.|.+|+++++|.++
T Consensus 133 tG~~i~~~L~~~~~~~gi~i~~~t~v~~L 161 (575)
T PRK05945 133 TGHAILHELVNNLRRYGVTIYDEWYVMRL 161 (575)
T ss_pred ChHHHHHHHHHHHhhCCCEEEeCcEEEEE
Confidence 44689999999999999999999999875
No 124
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=54.55 E-value=16 Score=26.86 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.++++|.+++++++|++|
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i 209 (377)
T PRK04965 183 PEVSSRLQHRLTEMGVHLLLKSQLQGL 209 (377)
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEE
Confidence 457788899999999999999999886
No 125
>PRK06996 hypothetical protein; Provisional
Probab=54.39 E-value=17 Score=26.84 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+++.|++++++++|++|
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~ 141 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAP 141 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeee
Confidence 578999999999999999999999876
No 126
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=53.92 E-value=19 Score=25.09 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=21.8
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
+.-.||.+.++.+|.+.+.+.|-+|+
T Consensus 12 ~~k~GGLgdv~~~L~kaL~~~G~~V~ 37 (245)
T PF08323_consen 12 FAKVGGLGDVVGSLPKALAKQGHDVR 37 (245)
T ss_dssp TB-SSHHHHHHHHHHHHHHHTT-EEE
T ss_pred ccccCcHhHHHHHHHHHHHhcCCeEE
Confidence 35689999999999999999998875
No 127
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=53.84 E-value=23 Score=27.71 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.++|.+.+++.|.+|+.+++|+++
T Consensus 128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L 155 (566)
T TIGR01812 128 GHALLHTLYEQCLKLGVSFFNEYFALDL 155 (566)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccEEEEE
Confidence 4578999999999999999999999875
No 128
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=53.82 E-value=14 Score=21.85 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=24.3
Q ss_pred eeCCcHHHHHHHHHHHHHhcCcEEEcCcc
Q 044011 66 YPLRGSGALVNALVRGIEKFGGRLSLRSR 94 (99)
Q Consensus 66 ~p~GG~~~l~~aL~~~i~~~Gg~v~~~~~ 94 (99)
...=|.+.+++.+.+..+++|..|.-|-+
T Consensus 20 VvAKG~g~~A~~I~~~A~e~~VPi~~~~~ 48 (82)
T TIGR00789 20 VVASGVGEVAERIIEIAKKHGIPIVEDPD 48 (82)
T ss_pred EEEEeCCHHHHHHHHHHHHcCCCEEeCHH
Confidence 33468899999999999999999887654
No 129
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=53.69 E-value=18 Score=27.42 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i 233 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKV 233 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence 467889999999999999999999886
No 130
>PRK07804 L-aspartate oxidase; Provisional
Probab=53.18 E-value=18 Score=28.23 Aligned_cols=28 Identities=11% Similarity=-0.027 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.++|.+.+++.|.+|+.+++|.++
T Consensus 143 G~~i~~~L~~~~~~~gV~i~~~~~v~~L 170 (541)
T PRK07804 143 GAEVQRALDAAVRADPLDIREHALALDL 170 (541)
T ss_pred HHHHHHHHHHHHHhCCCEEEECeEeeee
Confidence 4689999999999999999999999876
No 131
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=53.07 E-value=13 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+++.|++|+.+++|+.+
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~ 137 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSI 137 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEE
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccc
Confidence 578999999999999999999999865
No 132
>PRK06834 hypothetical protein; Provisional
Probab=52.96 E-value=18 Score=27.84 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+++.|.+|+.+++|++|
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v 126 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGF 126 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEE
Confidence 568888999999999999999999876
No 133
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=52.76 E-value=19 Score=27.47 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..+.+.+.+.+++.|.+|+++++|++|
T Consensus 223 d~~~~~~~~~~l~~~gi~i~~~~~v~~i 250 (475)
T PRK06327 223 DEQVAKEAAKAFTKQGLDIHLGVKIGEI 250 (475)
T ss_pred CHHHHHHHHHHHHHcCcEEEeCcEEEEE
Confidence 4678899999999999999999999887
No 134
>PRK07190 hypothetical protein; Provisional
Probab=52.60 E-value=19 Score=27.81 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..+-+.|.+.+++.|.+|+.+++|++|
T Consensus 108 q~~le~~L~~~~~~~Gv~v~~~~~v~~l 135 (487)
T PRK07190 108 QSYVEKLLDDKLKEAGAAVKRNTSVVNI 135 (487)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 4556677888899999999999999876
No 135
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=52.10 E-value=21 Score=27.02 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i 233 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSI 233 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 577888999999999999999999876
No 136
>PRK10015 oxidoreductase; Provisional
Probab=51.58 E-value=21 Score=27.04 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+++.|++++.+++|++|
T Consensus 108 ~~fd~~L~~~a~~~Gv~i~~~~~V~~i 134 (429)
T PRK10015 108 NRLDPWLMEQAEQAGAQFIPGVRVDAL 134 (429)
T ss_pred hHHHHHHHHHHHHcCCEEECCcEEEEE
Confidence 345667899999999999999999875
No 137
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=51.49 E-value=21 Score=26.77 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i 224 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEV 224 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence 567788888999999999999999887
No 138
>PLN02507 glutathione reductase
Probab=51.48 E-value=21 Score=27.61 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..+.+.+.+.+++.|.+++++++|++|
T Consensus 243 d~~~~~~l~~~l~~~GI~i~~~~~V~~i 270 (499)
T PLN02507 243 DDEMRAVVARNLEGRGINLHPRTNLTQL 270 (499)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 3678888999999999999999999886
No 139
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=51.36 E-value=25 Score=21.70 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.1
Q ss_pred eCCcHHHHHHHHHHHHHhcCcEEEcC
Q 044011 67 PLRGSGALVNALVRGIEKFGGRLSLR 92 (99)
Q Consensus 67 p~GG~~~l~~aL~~~i~~~Gg~v~~~ 92 (99)
..||+...+..|++.+.+.|-+|..=
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~ 35 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVV 35 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEE
Confidence 47999999999999999999888653
No 140
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=51.31 E-value=18 Score=26.72 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-++|.+.+++.|.+|+.+++|++|
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i 138 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQM 138 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEE
Confidence 467789999999999999999999876
No 141
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=50.93 E-value=17 Score=26.80 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-+.|.+..++.|++++++++|++|
T Consensus 103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i 129 (392)
T PRK08243 103 TEVTRDLMAARLAAGGPIRFEASDVAL 129 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEE
Confidence 467788888889999999999998865
No 142
>PRK13748 putative mercuric reductase; Provisional
Probab=50.62 E-value=22 Score=27.61 Aligned_cols=28 Identities=11% Similarity=0.079 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..+++.+.+.+++.|.+|+++++|++|
T Consensus 309 d~~~~~~l~~~l~~~gI~i~~~~~v~~i 336 (561)
T PRK13748 309 DPAIGEAVTAAFRAEGIEVLEHTQASQV 336 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 4678899999999999999999999876
No 143
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=50.35 E-value=20 Score=18.57 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcC
Q 044011 72 GALVNALVRGIEKFGGRLSLR 92 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~ 92 (99)
+.--+.|.+.++++||++...
T Consensus 12 ~~~~~~l~~~i~~~Gg~v~~~ 32 (72)
T cd00027 12 SEERDELKELIEKLGGKVTSS 32 (72)
T ss_pred CcCHHHHHHHHHHcCCEEecc
Confidence 456688999999999998764
No 144
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=49.99 E-value=24 Score=25.48 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=28.2
Q ss_pred eeCCcH--HHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 66 YPLRGS--GALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 66 ~p~GG~--~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
.+.|.+ ..+++.+.+.++++|.+++++.+|.+|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~ 205 (415)
T COG0446 170 RLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVE 205 (415)
T ss_pred ccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEE
Confidence 333444 5899999999999999999999998873
No 145
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=49.96 E-value=30 Score=19.04 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccc
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRG 95 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V 95 (99)
..-.+.....++++||++......
T Consensus 5 ~~Y~~~~~~~l~~~GG~~l~~~~~ 28 (65)
T PF07045_consen 5 QEYREAVPPILEKYGGRVLARGGE 28 (65)
T ss_dssp HHHHHHHHHHHHHTT-EEEEECEE
T ss_pred HHHHHHHHHHHHHcCCEEEEECCc
Confidence 344567778899999999886443
No 146
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=49.92 E-value=21 Score=29.22 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..|-+.|.+.+++.|++|+++++|+++
T Consensus 96 R~~L~~~L~e~a~~~GV~i~~g~~v~~i 123 (765)
T PRK08255 96 RKRLLNILQARCEELGVKLVFETEVPDD 123 (765)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccCch
Confidence 4789999999999999999999999875
No 147
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=49.90 E-value=23 Score=26.83 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i 233 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAV 233 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 567889999999999999999999876
No 148
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.49 E-value=25 Score=27.77 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.++|.+.+++.|.+|+.+++|.++
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~L 166 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDL 166 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEE
Confidence 4679999999999999999999999875
No 149
>PF02522 Antibiotic_NAT: Aminoglycoside 3-N-acetyltransferase; InterPro: IPR003679 This family consists of bacterial aminoglycoside 3-N-acetyltransferases (2.3.1.81 from EC) that catalyse the reaction []: Acetyl-Co + a 2-deoxystreptamine antibiotic = CoA + N3'-acetyl-2-deoxystreptamine antibiotic The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others. For the kanamycin group antibiotics acetylation occurred at the 3"-amino group in arbekacin and amikacin, and at the 3-amino group in dibekacin as in the case of kanamycin reflecting the effect of the (S)-4-amino-2-hydroxybutyryl side chain which is present in arbekacin and amikacin, but absent in dibekacin and kanamycin [].; GO: 0046353 aminoglycoside 3-N-acetyltransferase activity, 0046677 response to antibiotic; PDB: 3SMA_D 3N0M_B 3IJW_B 3N0S_D 3SLB_C 3SLF_A 3KZL_D 3E4F_B 2NYG_E.
Probab=49.47 E-value=14 Score=25.63 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.2
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
++++.||.+++.+||.+.+.+.| +|.
T Consensus 9 lG~v~gg~~~vi~aL~~~vg~~G-Tlv 34 (229)
T PF02522_consen 9 LGYVEGGAETVIDALLEVVGPEG-TLV 34 (229)
T ss_dssp G-CBTTHHHHHHHHHHHHHTTTS-EEE
T ss_pred hCCCCCcHHHHHHHHHHHhccCC-eEE
Confidence 46789999999999999988776 443
No 150
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=49.18 E-value=17 Score=19.82 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=17.8
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEE
Q 044011 68 LRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
.+-...--+.+.+.++++||++.
T Consensus 14 ~~~~~~~~~~l~~~i~~~GG~v~ 36 (78)
T PF00533_consen 14 SGFDSDEREELEQLIKKHGGTVS 36 (78)
T ss_dssp SSTSSSHHHHHHHHHHHTTEEEE
T ss_pred ccCCCCCHHHHHHHHHHcCCEEE
Confidence 44555556788999999999994
No 151
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=48.87 E-value=18 Score=21.95 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=23.4
Q ss_pred eeCCcHHHHHHHHHHHHHhcCcEEEcCc
Q 044011 66 YPLRGSGALVNALVRGIEKFGGRLSLRS 93 (99)
Q Consensus 66 ~p~GG~~~l~~aL~~~i~~~Gg~v~~~~ 93 (99)
...=|-+.+++.+.+..+++|.-|.-+-
T Consensus 25 vvA~G~G~iAe~II~~Ake~~Vpi~edp 52 (92)
T COG2257 25 VVASGKGEIAEKIIEKAKEHGVPIQEDP 52 (92)
T ss_pred EEeecchHHHHHHHHHHHHcCCCcccCH
Confidence 3446899999999999999998887654
No 152
>PRK06184 hypothetical protein; Provisional
Probab=48.69 E-value=24 Score=27.07 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+++.|++|+++++|++|
T Consensus 109 ~~le~~L~~~l~~~gv~i~~~~~v~~i 135 (502)
T PRK06184 109 WRTERILRERLAELGHRVEFGCELVGF 135 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEE
Confidence 346678889999999999999999876
No 153
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=48.44 E-value=21 Score=27.79 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.|.+.+++.|++|+++++|+++
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~~t~v~~L 160 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILEEVMAIKL 160 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeee
Confidence 4679999999999999999999999875
No 154
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=47.99 E-value=21 Score=21.81 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCcEEEc
Q 044011 75 VNALVRGIEKFGGRLSL 91 (99)
Q Consensus 75 ~~aL~~~i~~~Gg~v~~ 91 (99)
-+.+.+.|++.||.||-
T Consensus 60 ~d~i~~~Ie~~Gg~IHS 76 (95)
T PF02680_consen 60 FDEIKEAIEELGGVIHS 76 (95)
T ss_dssp HHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHcCCeEEe
Confidence 47889999999999974
No 155
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=47.79 E-value=26 Score=26.69 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.+.+.++++|.+++++++|++|
T Consensus 217 d~~~~~~l~~~L~~~gV~i~~~~~v~~v 244 (466)
T PRK07845 217 DADAAEVLEEVFARRGMTVLKRSRAESV 244 (466)
T ss_pred CHHHHHHHHHHHHHCCcEEEcCCEEEEE
Confidence 3567888999999999999999998876
No 156
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.14 E-value=25 Score=27.93 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..|.++|.+.+++.|.+|+++++|.++
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~L 175 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDL 175 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEE
Confidence 3579999999999999999999999875
No 157
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=46.36 E-value=25 Score=27.13 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+|++++.|++|
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v 246 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKV 246 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEE
Confidence 567889999999999999999987765
No 158
>PRK05569 flavodoxin; Provisional
Probab=45.79 E-value=33 Score=21.40 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.4
Q ss_pred eCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 67 PLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 67 p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
+-|-+..+++++++.+++.|.++..
T Consensus 11 ~tGnT~~iA~~i~~~~~~~g~~v~~ 35 (141)
T PRK05569 11 CGGNVEVLANTIADGAKEAGAEVTI 35 (141)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 4688899999999999999987654
No 159
>PRK08244 hypothetical protein; Provisional
Probab=45.31 E-value=29 Score=26.47 Aligned_cols=27 Identities=7% Similarity=-0.043 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+++.|.+|+.+++|++|
T Consensus 100 ~~le~~L~~~~~~~gv~v~~~~~v~~i 126 (493)
T PRK08244 100 AETEKVLEEHARSLGVEIFRGAEVLAV 126 (493)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCEEEEE
Confidence 367788888899999999999999876
No 160
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=44.70 E-value=22 Score=23.40 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=18.6
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCc
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGG 87 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg 87 (99)
|+|...||.+.|...+++.+-++|.
T Consensus 1 gtylitGG~gglg~~la~~La~~~~ 25 (181)
T PF08659_consen 1 GTYLITGGLGGLGQSLARWLAERGA 25 (181)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT-
T ss_pred CEEEEECCccHHHHHHHHHHHHcCC
Confidence 3567778888888888888877775
No 161
>PRK10262 thioredoxin reductase; Provisional
Probab=44.65 E-value=18 Score=25.79 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 185 ~~~~~~~~~~l~~~gV~i~~~~~v~~v 211 (321)
T PRK10262 185 KILIKRLMDKVENGNIILHTNRTLEEV 211 (321)
T ss_pred HHHHHHHHhhccCCCeEEEeCCEEEEE
Confidence 456788888999999999999999886
No 162
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=44.28 E-value=28 Score=27.79 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..|..+|.+.++++|.+|+.+++|.++
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~L 192 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDL 192 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEE
Confidence 3689999999999999999999999874
No 163
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=43.84 E-value=37 Score=21.32 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=20.2
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEE
Q 044011 68 LRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
-|-...+|++|++.+++.|.++.
T Consensus 11 tGnTe~iA~~ia~~l~~~g~~v~ 33 (140)
T TIGR01754 11 SGNTEEVAFMIQDYLQKDGHEVD 33 (140)
T ss_pred CChHHHHHHHHHHHHhhCCeeEE
Confidence 37789999999999999998875
No 164
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=43.47 E-value=32 Score=26.45 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHh-cCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEK-FGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~-~Gg~v~~~~~V~~I 98 (99)
...+.++|.+.+++ .|.+|+.+++|++|
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l 155 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDL 155 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeee
Confidence 46799999999998 69999999999886
No 165
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.34 E-value=33 Score=27.19 Aligned_cols=29 Identities=17% Similarity=-0.028 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.-..|.++|.+.+++.|.+|++++.|.++
T Consensus 141 ~G~~i~~~L~~~~~~~gi~i~~~~~~~~L 169 (588)
T PRK08958 141 TGHALLHTLYQQNLKNHTTIFSEWYALDL 169 (588)
T ss_pred CHHHHHHHHHHHhhhcCCEEEeCcEEEEE
Confidence 34679999999999999999999998875
No 166
>PRK07512 L-aspartate oxidase; Provisional
Probab=43.25 E-value=33 Score=26.67 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
....+.++|.+.+++. |.+|+.+++|.++
T Consensus 134 ~G~~l~~~L~~~~~~~~gV~i~~~~~v~~L 163 (513)
T PRK07512 134 AGAAIMRALIAAVRATPSITVLEGAEARRL 163 (513)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECcChhhe
Confidence 4568999999999876 8999999999875
No 167
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=43.16 E-value=33 Score=26.76 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHh---c-CcEEEcCccceec
Q 044011 72 GALVNALVRGIEK---F-GGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~---~-Gg~v~~~~~V~~I 98 (99)
..+.++|.+.+++ . |++|+++++|+++
T Consensus 148 ~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~L 178 (549)
T PRK12834 148 PGVVEPFERRVREAAARGLVRFRFRHRVDEL 178 (549)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEecCEeeEE
Confidence 4688888888763 3 5899999999875
No 168
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=43.16 E-value=37 Score=27.40 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 69 RGSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 69 GG~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+....+..+|.+.+++.|++|+.+++|.++
T Consensus 155 ~tG~~l~~~L~~~~~~~gv~i~~~~~~~~L 184 (657)
T PRK08626 155 GTGHTMLYAVDNEAIKLGVPVHDRKEAIAL 184 (657)
T ss_pred CcHHHHHHHHHHHHHhCCCEEEeeEEEEEE
Confidence 456678899999999999999999999876
No 169
>PLN02546 glutathione reductase
Probab=43.10 E-value=33 Score=27.14 Aligned_cols=28 Identities=4% Similarity=-0.006 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..+.+.+.+.++++|.+++++++|++|
T Consensus 292 d~~~~~~l~~~L~~~GV~i~~~~~v~~i 319 (558)
T PLN02546 292 DEEVRDFVAEQMSLRGIEFHTEESPQAI 319 (558)
T ss_pred CHHHHHHHHHHHHHCCcEEEeCCEEEEE
Confidence 3566778889999999999999998876
No 170
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=43.05 E-value=32 Score=28.68 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCcEEEcCccceec
Q 044011 73 ALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 73 ~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.+.++++|.+|+++++|++|
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I 213 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEI 213 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEE
Confidence 45678899999999999999999887
No 171
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.62 E-value=26 Score=20.79 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.2
Q ss_pred eCCcHHHHHHHHHHHHHhcCcEEEcC
Q 044011 67 PLRGSGALVNALVRGIEKFGGRLSLR 92 (99)
Q Consensus 67 p~GG~~~l~~aL~~~i~~~Gg~v~~~ 92 (99)
.+||.....+.+.+.++++|+++..-
T Consensus 4 iVGG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 4 IVGGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred EEcCCcccHHHHHHHHHHcCCEEEEE
Confidence 57998889999999999999997543
No 172
>PTZ00058 glutathione reductase; Provisional
Probab=42.38 E-value=35 Score=27.07 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I 304 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEI 304 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 467889999999999999999999876
No 173
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.16 E-value=34 Score=27.47 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCcEEEcCccceec
Q 044011 75 VNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 75 ~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.+.|.+.+++.|++|+++++|+++
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~L 196 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDL 196 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEE
Confidence 377888899999999999999875
No 174
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=41.97 E-value=42 Score=26.48 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
....|.++|.+.+++.|.+|+.+++|.++
T Consensus 124 tG~~i~~~L~~~~~~~gi~i~~~~~~~~L 152 (570)
T PRK05675 124 TGHALLHTLYQGNLKNGTTFLNEWYAVDL 152 (570)
T ss_pred CHHHHHHHHHHHHhccCCEEEECcEEEEE
Confidence 34689999999999999999999999875
No 175
>PTZ00052 thioredoxin reductase; Provisional
Probab=41.77 E-value=30 Score=26.75 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++.|.+++++++|++|
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v 248 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINI 248 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEE
Confidence 356788999999999999999988765
No 176
>PRK08163 salicylate hydroxylase; Provisional
Probab=41.75 E-value=34 Score=24.95 Aligned_cols=27 Identities=4% Similarity=-0.026 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcC-cEEEcCccceec
Q 044011 72 GALVNALVRGIEKFG-GRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~G-g~v~~~~~V~~I 98 (99)
..+.++|.+.+++.| .+++.+++|++|
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i 136 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGI 136 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEE
Confidence 457889999998886 799999999876
No 177
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=41.52 E-value=34 Score=21.88 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=22.5
Q ss_pred eee-CCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYP-LRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p-~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
+.| .||....+..|++.+++.|-+|..
T Consensus 8 ~~~~~~G~~~~~~~l~~~L~~~g~~v~v 35 (229)
T cd01635 8 LLPGGGGVELVLLDLAKALARRGHEVEV 35 (229)
T ss_pred cCCCCCCchhHHHHHHHHHHHcCCeEEE
Confidence 445 899999999999999998877653
No 178
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=41.21 E-value=15 Score=24.91 Aligned_cols=36 Identities=8% Similarity=-0.191 Sum_probs=20.7
Q ss_pred hcCCCCCchhHHHHHHHHHHHhCCCCceeeeCCcHHHH
Q 044011 37 LAGVKSNGILSAEMVYMFAEWYKPGCSLEYPLRGSGAL 74 (99)
Q Consensus 37 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~p~GG~~~l 74 (99)
.-|.||..++-....+-... ..--.||+|.|||-.-
T Consensus 104 qkG~~p~atrLGfeL~k~Gf--twfkdWY~PEG~mEGg 139 (192)
T COG4353 104 QKGKPPVATRLGFELLKAGF--TWFKDWYFPEGGMEGG 139 (192)
T ss_pred HcCCCCccchhhHHHHhCcc--eeeeeeeccCcccccc
Confidence 45777776666554432222 1112479999998543
No 179
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=41.15 E-value=50 Score=19.87 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=17.8
Q ss_pred CCcHHHHHHHHHHHHHhcCc
Q 044011 68 LRGSGALVNALVRGIEKFGG 87 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg 87 (99)
--|+.++.++|.+.+++.|-
T Consensus 13 AaGA~~V~~al~~ei~~~gl 32 (92)
T cd03063 13 ALGADEVAEAIEAEAAARGL 32 (92)
T ss_pred hhCHHHHHHHHHHHHHHcCC
Confidence 35889999999999999984
No 180
>PRK05568 flavodoxin; Provisional
Probab=40.07 E-value=46 Score=20.67 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 68 LRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
-|-+..+++++++.+++.|.++..
T Consensus 12 ~GnT~~~a~~i~~~~~~~g~~v~~ 35 (142)
T PRK05568 12 TGNTEAMANLIAEGAKENGAEVKL 35 (142)
T ss_pred CchHHHHHHHHHHHHHHCCCeEEE
Confidence 589999999999999999977653
No 181
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=40.02 E-value=44 Score=20.49 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.5
Q ss_pred eCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 67 PLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 67 p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
+-|-+..+++++.+.+++.|.++..
T Consensus 8 ~tGnT~~~A~~i~~~~~~~g~~v~~ 32 (140)
T TIGR01753 8 MTGNTEEMANIIAEGLKEAGAEVDL 32 (140)
T ss_pred CCcHHHHHHHHHHHHHHhcCCeEEE
Confidence 3689999999999999999887754
No 182
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=39.91 E-value=36 Score=25.28 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-+-|++..++.|++++.+++|.++
T Consensus 95 ~~fd~~La~~A~~aGae~~~~~~~~~~ 121 (396)
T COG0644 95 AKFDKWLAERAEEAGAELYPGTRVTGV 121 (396)
T ss_pred HHhhHHHHHHHHHcCCEEEeceEEEEE
Confidence 467778999999999999999999875
No 183
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=39.58 E-value=36 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhcC-cEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFG-GRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~G-g~v~~~~~V~~I 98 (99)
-..+-++|.+.+++.+ .+++++++|+.+
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~ 131 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAV 131 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEE
Confidence 5789999999999998 699999999986
No 184
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=39.24 E-value=50 Score=20.47 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.7
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEE
Q 044011 68 LRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
-|-+..+|++|.+.+++.|.+++
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~ 29 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVR 29 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEE
T ss_pred chhHHHHHHHHHHHHHHcCCcee
Confidence 47789999999999999997653
No 185
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=39.22 E-value=30 Score=22.83 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcC
Q 044011 70 GSGALVNALVRGIEKFGGRLSLR 92 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~ 92 (99)
|++.|..+++++++..|-+|..-
T Consensus 43 G~G~IG~~vA~~l~~fG~~V~~~ 65 (178)
T PF02826_consen 43 GYGRIGRAVARRLKAFGMRVIGY 65 (178)
T ss_dssp STSHHHHHHHHHHHHTT-EEEEE
T ss_pred EEcCCcCeEeeeeecCCceeEEe
Confidence 99999999999999999998753
No 186
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=39.07 E-value=41 Score=22.60 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=22.8
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
+..+.||++.|..++++.+.++|.++..
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~ 32 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVA 32 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEE
Confidence 4677888889999999998888887654
No 187
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=38.56 E-value=47 Score=26.36 Aligned_cols=29 Identities=14% Similarity=0.009 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.-..|.++|.+.+++.|.+++.+++|.++
T Consensus 146 tG~~l~~~L~~~~~~~gi~i~~~~~~~~L 174 (591)
T PRK07057 146 TGHALLHTLYQQNVAAKTQFFVEWMALDL 174 (591)
T ss_pred ChHHHHHHHHHHHHhcCCEEEeCcEEEEE
Confidence 34679999999999999999999998764
No 188
>PRK09072 short chain dehydrogenase; Provisional
Probab=38.31 E-value=42 Score=22.91 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=24.1
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.+.|.+|..
T Consensus 7 ~vlItG~s~~iG~~ia~~l~~~G~~V~~ 34 (263)
T PRK09072 7 RVLLTGASGGIGQALAEALAAAGARLLL 34 (263)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999999988753
No 189
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=37.92 E-value=39 Score=17.83 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=21.3
Q ss_pred eeeCC-cHHHHHHHHHHHHHhcCcEEEcC
Q 044011 65 EYPLR-GSGALVNALVRGIEKFGGRLSLR 92 (99)
Q Consensus 65 ~~p~G-G~~~l~~aL~~~i~~~Gg~v~~~ 92 (99)
.+..| ....-.+.+.+.++++||++...
T Consensus 8 ~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~ 36 (80)
T smart00292 8 FVITGKFDKNERDELKELIEALGGKVTSS 36 (80)
T ss_pred EEEeCCCCCccHHHHHHHHHHcCCEEecc
Confidence 34445 46667788999999999999765
No 190
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=37.84 E-value=44 Score=27.52 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCcEEEcCccceec
Q 044011 73 ALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 73 ~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.+.++++|.+|+++++|++|
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i 208 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEI 208 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEE
Confidence 45677888999999999999998876
No 191
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.79 E-value=45 Score=22.33 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=23.4
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.+.|.+|..
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~ 36 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGL 36 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999888888754
No 192
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.08 E-value=37 Score=20.71 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=19.8
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEcC
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSLR 92 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~~ 92 (99)
-...-|..-=-+.+.+.+|+.||.||-=
T Consensus 52 ~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 52 KITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred EEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 3444444444578999999999999753
No 193
>PRK07395 L-aspartate oxidase; Provisional
Probab=36.88 E-value=44 Score=26.35 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
....+.++|.+.+++. |.+|+++++|.++
T Consensus 132 ~G~~i~~~L~~~~~~~~gi~i~~~~~v~~L 161 (553)
T PRK07395 132 TGRAIVTTLTEQVLQRPNIEIISQALALSL 161 (553)
T ss_pred ChHHHHHHHHHHHhhcCCcEEEECcChhhh
Confidence 3467999999999765 9999999999875
No 194
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=36.80 E-value=53 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.+.+.++++|.+++++++|++|
T Consensus 266 ~~~l~~~l~~~l~~~gv~i~~~~~V~~I 293 (515)
T TIGR03140 266 GSQLAANLEEHIKQYPIDLMENQRAKKI 293 (515)
T ss_pred HHHHHHHHHHHHHHhCCeEEcCCEEEEE
Confidence 3567899999999999999999999876
No 195
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=36.64 E-value=45 Score=23.24 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=22.3
Q ss_pred eee-CCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYP-LRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p-~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
+.| .||....+..|++.+.++|=+|..
T Consensus 9 ~~p~~gG~~~~~~~l~~~L~~~g~~v~v 36 (357)
T cd03795 9 YPPDRGGIEQVIRDLAEGLAARGIEVAV 36 (357)
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCCceEE
Confidence 445 899999999999999998865543
No 196
>PRK07588 hypothetical protein; Provisional
Probab=36.63 E-value=33 Score=25.10 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.++|.+.++. |++|+++++|++|
T Consensus 103 ~~l~~~L~~~~~~-~v~i~~~~~v~~i 128 (391)
T PRK07588 103 GDLAAAIYTAIDG-QVETIFDDSIATI 128 (391)
T ss_pred HHHHHHHHHhhhc-CeEEEeCCEEeEE
Confidence 4677777776654 8999999999886
No 197
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.87 E-value=2.2e+02 Score=22.53 Aligned_cols=85 Identities=22% Similarity=0.337 Sum_probs=53.0
Q ss_pred cCcHHHHHhcCCCCCHHHHHHHH-HHHHHhcCCCCCchhHHHHHH----HHHHHhCCC-CceeeeCCcHHHHHHHHHHHH
Q 044011 9 LRPFSDIIDSLELKDPFVRNWID-LLAFLLAGVKSNGILSAEMVY----MFAEWYKPG-CSLEYPLRGSGALVNALVRGI 82 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~l~~~l~-~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~-~g~~~p~GG~~~l~~aL~~~i 82 (99)
..|+.|+|++ -=-.|.++.+.- ..+ ....+++.+....- .+..+-+.| .+.-||.=|.+.+++++.+..
T Consensus 222 e~~F~EyL~~-~rltp~lqs~vl~aIa----M~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGELpQcFCRlc 296 (547)
T KOG4405|consen 222 ERPFSEYLKT-MRLTPKLQSIVLHAIA----MLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGELPQCFCRLC 296 (547)
T ss_pred cCcHHHHHHh-cCCChhhHHHHHHHHH----hcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCcchHHHHHHH
Confidence 4577888876 333666776542 122 12222222222221 122221222 356899999999999999999
Q ss_pred HhcCcEEEcCccceec
Q 044011 83 EKFGGRLSLRSRGKDS 98 (99)
Q Consensus 83 ~~~Gg~v~~~~~V~~I 98 (99)
.=.||...++.+|+.|
T Consensus 297 AVfGgIYcLr~~Vq~i 312 (547)
T KOG4405|consen 297 AVFGGIYCLRRPVQAI 312 (547)
T ss_pred HHhcceEEeccchhhe
Confidence 9999999999999865
No 198
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=35.78 E-value=51 Score=25.52 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.+.|.+.++++|.+++++++|++|
T Consensus 265 ~~~l~~~l~~~~~~~gv~i~~~~~V~~I 292 (517)
T PRK15317 265 GPKLAAALEEHVKEYDVDIMNLQRASKL 292 (517)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 3578999999999999999999999876
No 199
>PRK07814 short chain dehydrogenase; Provisional
Probab=35.78 E-value=49 Score=22.66 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=23.3
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
......||.+.|..++++.+.+.|.+|.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi 38 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVL 38 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence 4577889999999999999888888875
No 200
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=35.33 E-value=50 Score=24.09 Aligned_cols=27 Identities=19% Similarity=0.054 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 72 GALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.++++ |.+++.+++|++|
T Consensus 112 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i 139 (391)
T PRK08020 112 RVLQLALWQALEAHPNVTLRCPASLQAL 139 (391)
T ss_pred HHHHHHHHHHHHcCCCcEEEcCCeeEEE
Confidence 56778898888887 9999999999876
No 201
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=35.21 E-value=51 Score=25.97 Aligned_cols=28 Identities=14% Similarity=-0.002 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.++|.+.+++.|.+|+.+++|.++
T Consensus 135 G~~i~~~L~~~~~~~gv~i~~~~~~~~L 162 (566)
T PRK06452 135 GMALLHTLFERTSGLNVDFYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCcEEEEE
Confidence 4679999999999999999999999875
No 202
>PRK06114 short chain dehydrogenase; Provisional
Probab=35.03 E-value=54 Score=22.29 Aligned_cols=29 Identities=10% Similarity=0.314 Sum_probs=23.6
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....+.||++.|..++++.+.+.|.+|..
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~ 37 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVAL 37 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 35677899999999999999888887764
No 203
>PRK08339 short chain dehydrogenase; Provisional
Probab=35.01 E-value=48 Score=22.89 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=23.8
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
+..+.||++.|-.++++.+-+.|.+|..
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~V~~ 37 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGADVIL 37 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999999988764
No 204
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=34.77 E-value=68 Score=18.89 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhcCcEEE
Q 044011 71 SGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~ 90 (99)
..++.+.+.+.+++.||+|.
T Consensus 17 ~~~~~~~~~~~i~~~gg~i~ 36 (93)
T TIGR00166 17 VKGQIERYKKVITLNGAEIV 36 (93)
T ss_pred HHHHHHHHHHHHHhCCCEEE
Confidence 56778888889999999985
No 205
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=34.76 E-value=47 Score=25.58 Aligned_cols=29 Identities=7% Similarity=-0.005 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCcE--EEcCccceecC
Q 044011 71 SGALVNALVRGIEKFGGR--LSLRSRGKDSS 99 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~--v~~~~~V~~I~ 99 (99)
...+.+-|.+.+++.|-+ |+++++|++|+
T Consensus 110 ~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~ 140 (461)
T PLN02172 110 HREVLAYLQDFAREFKIEEMVRFETEVVRVE 140 (461)
T ss_pred HHHHHHHHHHHHHHcCCcceEEecCEEEEEe
Confidence 477999999999999988 99999999874
No 206
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=34.63 E-value=57 Score=22.25 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=24.1
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|-.++++.+.+.|.+|..
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~vv~ 37 (251)
T PRK12481 10 VAIITGCNTGLGQGMAIGLAKAGADIVG 37 (251)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 4678899999999999999999988864
No 207
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=34.48 E-value=68 Score=18.69 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.8
Q ss_pred CcHHHHHHHHHHHHHhcCcEEE
Q 044011 69 RGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 69 GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
-...++.+.+.+.+.+.||+|+
T Consensus 16 ~~~~~~~~~~~~~i~~~gg~v~ 37 (92)
T PF01250_consen 16 EEIKKLIERVKKIIEKNGGVVR 37 (92)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
Confidence 3567888999999999999985
No 208
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=34.42 E-value=46 Score=25.78 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
=..+++.+.+.+++.|.+++++++|+++
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~ 240 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAV 240 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence 4678999999999988999999999876
No 209
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=34.33 E-value=49 Score=19.62 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhcCcEEE
Q 044011 72 GALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~ 90 (99)
..-.++..+.+++.||+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~ 37 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLK 37 (91)
T ss_pred HHHHHHHHHHHHHcCCEEE
Confidence 4556778889999999986
No 210
>PRK08226 short chain dehydrogenase; Provisional
Probab=34.04 E-value=56 Score=22.21 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=22.3
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.+.|.+|..
T Consensus 8 ~~lItG~s~giG~~la~~l~~~G~~Vv~ 35 (263)
T PRK08226 8 TALITGALQGIGEGIARVFARHGANLIL 35 (263)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 4677788888888888888888877754
No 211
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=34.01 E-value=48 Score=26.66 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.-..+.++|.+.+++.|.+|+.++.|.++
T Consensus 185 tG~~i~~~L~~~a~~~gv~i~~~~~~~~L 213 (635)
T PLN00128 185 TGHAMLHTLYGQAMKHNTQFFVEYFALDL 213 (635)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeeEEEEE
Confidence 34679999999999999999999999874
No 212
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=33.94 E-value=58 Score=28.20 Aligned_cols=28 Identities=7% Similarity=-0.054 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhc---CcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKF---GGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~---Gg~v~~~~~V~~I 98 (99)
...+.+.|.+.++++ |++|+++++|+++
T Consensus 543 G~~i~~~l~~~~~~~~~~gv~i~~~t~~~~L 573 (1167)
T PTZ00306 543 GFTIMRTLEDHIRTKLSGRVTIMTETTVTSL 573 (1167)
T ss_pred HHHHHHHHHHHHHhhccCCcEEEECCEEEEE
Confidence 366888899888875 9999999999875
No 213
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=33.79 E-value=58 Score=20.31 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=17.7
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGR 88 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~ 88 (99)
....||++.|..++++.+-+.|+.
T Consensus 3 ~lItGa~~giG~~~a~~l~~~g~~ 26 (167)
T PF00106_consen 3 VLITGASSGIGRALARALARRGAR 26 (167)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE
T ss_pred EEEECCCCHHHHHHHHHHHhcCce
Confidence 455678888888888888777664
No 214
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=33.58 E-value=42 Score=19.23 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.6
Q ss_pred CcHHHHHHHHHHHHHhcCcEE
Q 044011 69 RGSGALVNALVRGIEKFGGRL 89 (99)
Q Consensus 69 GG~~~l~~aL~~~i~~~Gg~v 89 (99)
-|.+++.++|.+.+...+|++
T Consensus 15 ~Ga~~v~~~l~~~l~~~~~~~ 35 (80)
T cd03083 15 NGYKAVLDALCRELGIRFGEV 35 (80)
T ss_pred CCHHHHHHHHHHHHCCCCCCc
Confidence 588999999999998777655
No 215
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=33.38 E-value=66 Score=21.68 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.3
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
++..|=+..++++.++.+++.|.|+..
T Consensus 10 ~r~~G~t~~l~~~~~~g~~~~G~E~~~ 36 (207)
T COG0655 10 PRSNGNTAKLAEAVLEGAEEAGAEVEI 36 (207)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEE
Confidence 455789999999999999999998754
No 216
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=33.10 E-value=53 Score=23.95 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+-++|.+.++++|+..+.+++|++|
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i 137 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESV 137 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEE
Confidence 578899999999998888999999876
No 217
>PRK08013 oxidoreductase; Provisional
Probab=32.82 E-value=58 Score=24.06 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 72 GALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.++++ |.+++++++|++|
T Consensus 111 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i 138 (400)
T PRK08013 111 SVIHYALWQKAQQSSDITLLAPAELQQV 138 (400)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEE
Confidence 46788999998887 7899999999876
No 218
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=32.72 E-value=57 Score=23.98 Aligned_cols=28 Identities=11% Similarity=-0.045 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
-..+.+.|.+.++++ |.+++++++|++|
T Consensus 120 ~~~l~~~L~~~~~~~~~v~i~~~~~v~~v 148 (415)
T PRK07364 120 HQVLLEALQEFLQSCPNITWLCPAEVVSV 148 (415)
T ss_pred cHHHHHHHHHHHhcCCCcEEEcCCeeEEE
Confidence 356888999988886 6899999999876
No 219
>PRK06475 salicylate hydroxylase; Provisional
Probab=32.69 E-value=62 Score=23.87 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 72 GALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+++. |.+|+++++|++|
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~ 134 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQ 134 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEE
Confidence 57888999988775 7899999999876
No 220
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=32.56 E-value=70 Score=17.59 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=16.4
Q ss_pred CcHHHHHHHHHHHHHhcCc
Q 044011 69 RGSGALVNALVRGIEKFGG 87 (99)
Q Consensus 69 GG~~~l~~aL~~~i~~~Gg 87 (99)
-|...+.++|.+.+++.|+
T Consensus 14 ~G~~~l~~~l~~~~~~~~~ 32 (77)
T cd02980 14 RGAEELLEALEKELGIRGG 32 (77)
T ss_pred CCHHHHHHHHHHHHhhhcC
Confidence 4689999999999999863
No 221
>PRK06924 short chain dehydrogenase; Provisional
Probab=32.50 E-value=63 Score=21.71 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=22.3
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||++.|..++++.+-++|-+|..
T Consensus 4 vlItGasggiG~~ia~~l~~~g~~V~~ 30 (251)
T PRK06924 4 VIITGTSQGLGEAIANQLLEKGTHVIS 30 (251)
T ss_pred EEEecCCchHHHHHHHHHHhcCCEEEE
Confidence 466799999999999999888887753
No 222
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=32.02 E-value=47 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
.+.++..+.+-++..||.|.+|=+|++|+
T Consensus 195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~ 223 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIA 223 (453)
T ss_pred hHHHHHHHHHHHHHhcccccccceeccch
Confidence 46789999999999999999999998874
No 223
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=31.96 E-value=56 Score=23.72 Aligned_cols=27 Identities=15% Similarity=-0.012 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcC-cEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFG-GRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~G-g~v~~~~~V~~I 98 (99)
-..+-++|.+.++++| .+++ +++|++|
T Consensus 110 ~~~l~~~L~~~~~~~~~v~~~-~~~v~~i 137 (388)
T PRK07608 110 SSLIERALWAALRFQPNLTWF-PARAQGL 137 (388)
T ss_pred hHHHHHHHHHHHHhCCCcEEE-cceeEEE
Confidence 4578899999999998 8888 9888876
No 224
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=31.74 E-value=53 Score=18.84 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHhcC---cEEE
Q 044011 70 GSGALVNALVRGIEKFG---GRLS 90 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~G---g~v~ 90 (99)
|.+.++.+|.+.+.++| -+|.
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~ 29 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVI 29 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEE
T ss_pred CCCHHHHHHHHHHHHCCCCceeEE
Confidence 78899999999999999 8877
No 225
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=31.70 E-value=82 Score=18.91 Aligned_cols=21 Identities=10% Similarity=0.004 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHHhcCcEEE
Q 044011 70 GSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~ 90 (99)
...++.+.+.+.+++.||+|.
T Consensus 22 ~~~~~~~~~~~~i~~~gg~i~ 42 (97)
T CHL00123 22 ELLKWIENYKKLLRKRGAKNI 42 (97)
T ss_pred HHHHHHHHHHHHHHHCCCEEE
Confidence 466778888889999999984
No 226
>PRK06101 short chain dehydrogenase; Provisional
Probab=31.69 E-value=64 Score=21.75 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=22.2
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||++.|..++++.+.+.|-+|..
T Consensus 4 vlItGas~giG~~la~~L~~~G~~V~~ 30 (240)
T PRK06101 4 VLITGATSGIGKQLALDYAKQGWQVIA 30 (240)
T ss_pred EEEEcCCcHHHHHHHHHHHhCCCEEEE
Confidence 567788899999999999888887754
No 227
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=31.47 E-value=68 Score=24.05 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.3
Q ss_pred eCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 67 PLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 67 p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
-.||.+..+.+|.+.+.+.|-+|+.
T Consensus 14 k~GGl~~~~~~L~~aL~~~G~~V~V 38 (476)
T cd03791 14 KTGGLGDVVGALPKALAKLGHDVRV 38 (476)
T ss_pred cCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 4799999999999999999987753
No 228
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=31.11 E-value=60 Score=21.77 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=22.4
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.++|.+|..
T Consensus 8 ~~lItG~s~~iG~~la~~l~~~g~~v~~ 35 (247)
T PRK12935 8 VAIVTGGAKGIGKAITVALAQEGAKVVI 35 (247)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEE
Confidence 4677788888888888888888888753
No 229
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=31.06 E-value=59 Score=22.02 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=21.7
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||++.+..++++.+.++|-+|..
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~ 29 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIA 29 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 355788899999999999888887654
No 230
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=30.94 E-value=57 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 73 ALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 73 ~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
.+-+.|.+.++++ |.+|+++++|++|
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i 140 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTAL 140 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEE
Confidence 3556777888775 8999999999876
No 231
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=30.94 E-value=59 Score=25.94 Aligned_cols=28 Identities=14% Similarity=-0.135 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhc----CcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKF----GGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~----Gg~v~~~~~V~~I 98 (99)
...+..+|.+.+++. |.+|+++++|+++
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~L 159 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDI 159 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEE
Confidence 456777777776654 8999999999875
No 232
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=30.90 E-value=98 Score=17.64 Aligned_cols=28 Identities=14% Similarity=-0.041 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEEcCccc
Q 044011 68 LRGSGALVNALVRGIEKFGGRLSLRSRG 95 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~~~~~V 95 (99)
+|=...|+++.++.++++|-+|.--|+-
T Consensus 37 qGia~~L~~~~l~~a~~~~~kv~p~C~y 64 (78)
T PF14542_consen 37 QGIAKKLVEAALDYARENGLKVVPTCSY 64 (78)
T ss_dssp TTHHHHHHHHHHHHHHHTT-EEEETSHH
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEECHH
Confidence 4667889999999999999999987763
No 233
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=30.86 E-value=69 Score=25.57 Aligned_cols=28 Identities=11% Similarity=-0.083 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcC-cEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFG-GRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~G-g~v~~~~~V~~I 98 (99)
-..+.++|.+.++++| ++|+.+++|.++
T Consensus 131 G~~~~~~L~~~a~~~ggV~i~~~~~v~~L 159 (608)
T PRK06854 131 GESYKPIVAEAAKKALGDNVLNRVFITDL 159 (608)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCCEEEEE
Confidence 3468889999998886 999999999875
No 234
>PRK06057 short chain dehydrogenase; Provisional
Probab=30.86 E-value=68 Score=21.74 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=24.5
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.++|-+|..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~ 36 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVV 36 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEE
Confidence 4778899999999999999999988754
No 235
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=30.83 E-value=70 Score=21.69 Aligned_cols=29 Identities=3% Similarity=0.036 Sum_probs=24.0
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....+.||.+.|..++++.+.++|.+|..
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~ 40 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVV 40 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEE
Confidence 34777899999999999999999887753
No 236
>PRK06756 flavodoxin; Provisional
Probab=30.69 E-value=74 Score=20.04 Aligned_cols=24 Identities=4% Similarity=0.129 Sum_probs=21.1
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 68 LRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
-|-...+++++++.+++.|.++..
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~ 35 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEV 35 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEE
Confidence 588999999999999999987754
No 237
>PRK07023 short chain dehydrogenase; Provisional
Probab=30.67 E-value=56 Score=21.97 Aligned_cols=27 Identities=19% Similarity=-0.043 Sum_probs=23.2
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
..+.||++.|..++++.+.+.|.+|..
T Consensus 4 vlItGasggiG~~ia~~l~~~G~~v~~ 30 (243)
T PRK07023 4 AIVTGHSRGLGAALAEQLLQPGIAVLG 30 (243)
T ss_pred EEEecCCcchHHHHHHHHHhCCCEEEE
Confidence 466799999999999999999988754
No 238
>PLN02253 xanthoxin dehydrogenase
Probab=30.43 E-value=68 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||.+.|..++++.+.+.|-+|..
T Consensus 20 ~~lItGas~gIG~~la~~l~~~G~~v~~ 47 (280)
T PLN02253 20 VALVTGGATGIGESIVRLFHKHGAKVCI 47 (280)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEE
Confidence 4788899999999999999999988764
No 239
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=29.97 E-value=63 Score=23.49 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 72 GALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.++++ |.+++.+++|++|
T Consensus 112 ~~l~~~l~~~~~~~~g~~~~~~~~v~~i 139 (395)
T PRK05732 112 HDVGQRLFALLDKAPGVTLHCPARVANV 139 (395)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 35677888888774 7899999999876
No 240
>PRK07045 putative monooxygenase; Reviewed
Probab=29.92 E-value=59 Score=23.78 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHh-cCcEEEcCccceec
Q 044011 72 GALVNALVRGIEK-FGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~-~Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+.+ .|.+++++++|++|
T Consensus 106 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i 133 (388)
T PRK07045 106 EQLRRLLLAKLDGLPNVRLRFETSIERI 133 (388)
T ss_pred HHHHHHHHHHHhcCCCeeEEeCCEEEEE
Confidence 4677888888865 57999999999876
No 241
>PRK06180 short chain dehydrogenase; Provisional
Probab=29.77 E-value=69 Score=22.15 Aligned_cols=28 Identities=18% Similarity=-0.035 Sum_probs=24.2
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||.+.|..++++.+.+.|.+|..
T Consensus 6 ~vlVtGasggiG~~la~~l~~~G~~V~~ 33 (277)
T PRK06180 6 TWLITGVSSGFGRALAQAALAAGHRVVG 33 (277)
T ss_pred EEEEecCCChHHHHHHHHHHhCcCEEEE
Confidence 3677899999999999999999988764
No 242
>PRK12747 short chain dehydrogenase; Provisional
Probab=29.77 E-value=67 Score=21.69 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=22.2
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|-.++++.+.+.|.+|..
T Consensus 6 ~~lItGas~gIG~~ia~~l~~~G~~v~~ 33 (252)
T PRK12747 6 VALVTGASRGIGRAIAKRLANDGALVAI 33 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCeEEE
Confidence 3677788888888888888888887754
No 243
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.73 E-value=92 Score=22.73 Aligned_cols=51 Identities=14% Similarity=-0.006 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 46 LSAEMVYMFAEWYKPGCSLEYPLRGSGALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 46 ~~~~~~~~~~~~~~~~~g~~~p~GG~~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
++...+..+..+-.. .- .+.++..-.=.+.++++++++ +.++++|++|++|
T Consensus 154 sAve~Al~L~~~a~~-Vt-lv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei 205 (305)
T COG0492 154 SAVEEALYLSKIAKK-VT-LVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEI 205 (305)
T ss_pred HHHHHHHHHHHhcCe-EE-EEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEE
Confidence 455555555554332 22 233333333388999999998 8999999999987
No 244
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=29.73 E-value=72 Score=19.96 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.3
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
.++.|=+..+++++.+.+++.|.++.
T Consensus 10 ~r~~~~t~~l~~~~~~~l~~~g~e~~ 35 (152)
T PF03358_consen 10 PRKNSNTRKLAEAVAEQLEEAGAEVE 35 (152)
T ss_dssp SSTTSHHHHHHHHHHHHHHHTTEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCEEE
Confidence 45678899999999999999987774
No 245
>PRK07063 short chain dehydrogenase; Provisional
Probab=29.66 E-value=73 Score=21.64 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=23.4
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.+.|.+|..
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~ 36 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVAL 36 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999999988754
No 246
>PRK08643 acetoin reductase; Validated
Probab=29.65 E-value=69 Score=21.65 Aligned_cols=26 Identities=8% Similarity=0.058 Sum_probs=19.5
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
....||++.|..++++.+.+.|.+|.
T Consensus 5 ~lItGas~giG~~la~~l~~~G~~v~ 30 (256)
T PRK08643 5 ALVTGAGQGIGFAIAKRLVEDGFKVA 30 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEE
Confidence 45668888888888888888777664
No 247
>PRK05717 oxidoreductase; Validated
Probab=29.60 E-value=76 Score=21.51 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=24.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||.+.|..++++.+-+.|.+|..
T Consensus 12 ~vlItG~sg~IG~~~a~~l~~~g~~v~~ 39 (255)
T PRK05717 12 VALVTGAARGIGLGIAAWLIAEGWQVVL 39 (255)
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCEEEE
Confidence 4778899999999999999999988765
No 248
>PRK12742 oxidoreductase; Provisional
Probab=29.59 E-value=70 Score=21.25 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=23.8
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||.+.|..++++.+.+.|.+|..
T Consensus 8 ~vlItGasggIG~~~a~~l~~~G~~v~~ 35 (237)
T PRK12742 8 KVLVLGGSRGIGAAIVRRFVTDGANVRF 35 (237)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 3677899999999999999999988754
No 249
>PRK07454 short chain dehydrogenase; Provisional
Probab=29.58 E-value=76 Score=21.21 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=22.3
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.+..++++.+.++|-+|..
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~ 35 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLAL 35 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 3667788888999999888888877653
No 250
>PRK07062 short chain dehydrogenase; Provisional
Probab=29.48 E-value=72 Score=21.72 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=23.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|..++++.+.+.|.+|..
T Consensus 10 ~~lItGas~giG~~ia~~l~~~G~~V~~ 37 (265)
T PRK07062 10 VAVVTGGSSGIGLATVELLLEAGASVAI 37 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEE
Confidence 4777899999999999999999988753
No 251
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=29.46 E-value=70 Score=22.16 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.0
Q ss_pred eee-CCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYP-LRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p-~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
+.| .||+...+..|++.+.+.|-++..
T Consensus 8 ~~~~~gG~~~~~~~l~~~L~~~g~~v~v 35 (366)
T cd03822 8 YPPRKCGIATFTTDLVNALSARGPDVLV 35 (366)
T ss_pred CCCCCCcHHHHHHHHHHHhhhcCCeEEE
Confidence 445 799999999999999999977754
No 252
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=29.44 E-value=50 Score=18.02 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcC-cEEEcCc
Q 044011 72 GALVNALVRGIEKFG-GRLSLRS 93 (99)
Q Consensus 72 ~~l~~aL~~~i~~~G-g~v~~~~ 93 (99)
.....+|.+.++++| |.|++-+
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~ 45 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTT 45 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEET
T ss_pred HHHHHHHHHHHHHhCCCeEEECC
Confidence 456788899999999 8888754
No 253
>PRK07791 short chain dehydrogenase; Provisional
Probab=29.33 E-value=74 Score=22.32 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=22.8
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|-.++++.+.+.|.+|..
T Consensus 8 ~~lITGas~GIG~aia~~la~~G~~vii 35 (286)
T PRK07791 8 VVIVTGAGGGIGRAHALAFAAEGARVVV 35 (286)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 4677888888888888888888887754
No 254
>PRK07856 short chain dehydrogenase; Provisional
Probab=29.29 E-value=79 Score=21.37 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=24.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|..++++.+.+.|.+|..
T Consensus 8 ~~lItGas~gIG~~la~~l~~~g~~v~~ 35 (252)
T PRK07856 8 VVLVTGGTRGIGAGIARAFLAAGATVVV 35 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 4688899999999999999999988754
No 255
>PRK09271 flavodoxin; Provisional
Probab=29.28 E-value=84 Score=20.27 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEE
Q 044011 68 LRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
-|-...+++++++.+++.|.++.
T Consensus 11 tGnTe~~A~~ia~~l~~~g~~v~ 33 (160)
T PRK09271 11 SGNTREVAREIEERCEEAGHEVD 33 (160)
T ss_pred CchHHHHHHHHHHHHHhCCCeeE
Confidence 37889999999999999998875
No 256
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=29.26 E-value=73 Score=21.75 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.1
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|-.++++.+.+.|.+|..
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~V~~ 34 (262)
T TIGR03325 7 VVLVTGGASGLGRAIVDRFVAEGARVAV 34 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999999988864
No 257
>PRK08264 short chain dehydrogenase; Validated
Probab=29.18 E-value=66 Score=21.42 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=23.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCc-EEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGG-RLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg-~v~ 90 (99)
.....||++.+..++++.+.+.|- +|.
T Consensus 8 ~vlItGgsg~iG~~la~~l~~~G~~~V~ 35 (238)
T PRK08264 8 VVLVTGANRGIGRAFVEQLLARGAAKVY 35 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCcccEE
Confidence 467889999999999999999997 654
No 258
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.01 E-value=77 Score=21.24 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=21.3
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
.....||.+.|..++++.+.++|.+|.
T Consensus 6 ~vlItGa~g~iG~~~a~~l~~~g~~v~ 32 (250)
T PRK08063 6 VALVTGSSRGIGKAIALRLAEEGYDIA 32 (250)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 366778888888888888888887765
No 259
>PRK05867 short chain dehydrogenase; Provisional
Probab=28.90 E-value=78 Score=21.43 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=22.3
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||.+.|..++++.+.+.|-+|..
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~ 38 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAI 38 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 4677788888888888888888877754
No 260
>PRK12367 short chain dehydrogenase; Provisional
Probab=28.77 E-value=80 Score=21.80 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=24.9
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|-.++++.+.+.|.+|..
T Consensus 16 ~~lITGas~gIG~ala~~l~~~G~~Vi~ 43 (245)
T PRK12367 16 RIGITGASGALGKALTKAFRAKGAKVIG 43 (245)
T ss_pred EEEEEcCCcHHHHHHHHHHHHCCCEEEE
Confidence 4678899999999999999999998864
No 261
>PRK06179 short chain dehydrogenase; Provisional
Probab=28.70 E-value=68 Score=21.90 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=24.8
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEcC
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSLR 92 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~ 92 (99)
...+.||++.|..++++.+.+.|-+|..-
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~ 34 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGT 34 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 36778999999999999999999887643
No 262
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=28.67 E-value=77 Score=21.42 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=22.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.+.|-+|..
T Consensus 11 ~~lItGas~giG~~ia~~L~~~G~~vvl 38 (254)
T PRK08085 11 NILITGSAQGIGFLLATGLAEYGAEIII 38 (254)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEE
Confidence 4677899999999999999888877644
No 263
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=28.65 E-value=74 Score=21.90 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.++++|.++++ ++|++|
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v 82 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKV 82 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEE
Confidence 57889999999999999999 888875
No 264
>PRK06126 hypothetical protein; Provisional
Probab=28.28 E-value=77 Score=24.52 Aligned_cols=26 Identities=23% Similarity=0.095 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 73 ALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 73 ~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
.+-+.|.+.+++. |.+|+++++|++|
T Consensus 127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i 153 (545)
T PRK06126 127 YLEPILLEHAAAQPGVTLRYGHRLTDF 153 (545)
T ss_pred HHHHHHHHHHHhCCCceEEeccEEEEE
Confidence 4677888888775 7899999999876
No 265
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=28.02 E-value=75 Score=21.62 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=22.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||.+.|..++++.+.+.|..|..
T Consensus 9 ~~lItGa~~gIG~~ia~~l~~~G~~vvi 36 (261)
T PRK08936 9 VVVITGGSTGLGRAMAVRFGKEKAKVVI 36 (261)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 4677888888888888888888877654
No 266
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=27.95 E-value=64 Score=21.99 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=18.3
Q ss_pred eeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 66 YPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 66 ~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...||++.|..++++.+.+.|.+|..
T Consensus 4 lItGas~gIG~aia~~l~~~G~~V~~ 29 (259)
T PRK08340 4 LVTASSRGIGFNVARELLKKGARVVI 29 (259)
T ss_pred EEEcCCcHHHHHHHHHHHHcCCEEEE
Confidence 44577777777777777777776654
No 267
>PRK05866 short chain dehydrogenase; Provisional
Probab=27.91 E-value=83 Score=22.22 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=24.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.+.|-+|..
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~ 69 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVA 69 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 4678899999999999999999988764
No 268
>PF06967 Mo-nitro_C: Mo-dependent nitrogenase C-terminus; InterPro: IPR009717 This entry represents the C terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria [].
Probab=27.87 E-value=74 Score=18.99 Aligned_cols=26 Identities=35% Similarity=0.676 Sum_probs=21.5
Q ss_pred ccCcHHHHHhcCCCCCHHHHHHHHHH
Q 044011 8 LLRPFSDIIDSLELKDPFVRNWIDLL 33 (99)
Q Consensus 8 ~~~s~~~~l~~~~f~~~~l~~~l~~~ 33 (99)
++.+++++++.+-.+|+++-.++..+
T Consensus 2 ~L~plr~wld~~ei~~~~~A~~iC~l 27 (84)
T PF06967_consen 2 LLQPLRQWLDSIEIHNPRLAHFICRL 27 (84)
T ss_pred hhHHHHHHHhhcccCCHHHHHHHHhh
Confidence 35789999998678999999988754
No 269
>PRK06398 aldose dehydrogenase; Validated
Probab=27.85 E-value=81 Score=21.58 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=25.1
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|-.++++.+.+.|.+|..
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~Vi~ 35 (258)
T PRK06398 8 VAIVTGGSQGIGKAVVNRLKEEGSNVIN 35 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEE
Confidence 4778899999999999999999988874
No 270
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=27.84 E-value=73 Score=23.94 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcC---cEEEcCccceec
Q 044011 72 GALVNALVRGIEKFG---GRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~G---g~v~~~~~V~~I 98 (99)
..+-++|.+.+++.+ .+++++++|++|
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i 146 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISV 146 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEE
Confidence 568888999999886 799999999876
No 271
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=27.80 E-value=84 Score=21.11 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=17.8
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
....||++.|..++++.+.+.|-+|.
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~ 28 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVA 28 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 34567777777777777777776653
No 272
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.73 E-value=79 Score=21.43 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=24.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|-.++++.+.+.|.+|..
T Consensus 9 ~~lItGas~gIG~~~a~~l~~~G~~v~~ 36 (255)
T PRK06463 9 VALITGGTRGIGRAIAEAFLREGAKVAV 36 (255)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 4778899999999999999999988854
No 273
>PF00542 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal domain; InterPro: IPR013823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the C-terminal domain of the large subunit ribosomal proteins, known as the L7/L12 family. L7/L12 is present in each 50S subunit in four copies organised as two dimers. The L8 protein complex consisting of two dimers of L7/L12 and L10 in Escherichia coli ribosomes is assembled on the conserved region of 23 S rRNA termed the GTPase-associated domain []. The L7/L12 dimer probably interacts with EF-Tu. L7 and L12 only differ in a single post translational modification of the addition of an acetyl group to the N terminus of L7.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1DD4_B 1DD3_A 1RQU_B 2GYA_5 2GYC_5 1RQS_A 1RQV_A 1CTF_A 2XUX_L.
Probab=27.59 E-value=1.2e+02 Score=17.04 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=23.8
Q ss_pred CceeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 62 CSLEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 62 ~g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.+.-+..+-...-++.+.+.+++.|+++-.
T Consensus 38 ~p~~ik~~v~keeAe~ik~~Le~aGa~v~l 67 (68)
T PF00542_consen 38 LPKVIKEGVSKEEAEEIKKKLEAAGAKVEL 67 (68)
T ss_dssp TTEEEEEEE-HHHHHHHHHHHHCCT-EEEE
T ss_pred CCHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 455677899999999999999999999853
No 274
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=27.54 E-value=62 Score=23.02 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.5
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
-..-||...|--+|++++-++|-+|..
T Consensus 8 iLITGG~sGIGl~lak~f~elgN~VIi 34 (245)
T COG3967 8 ILITGGASGIGLALAKRFLELGNTVII 34 (245)
T ss_pred EEEeCCcchhhHHHHHHHHHhCCEEEE
Confidence 456799999999999999999988754
No 275
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.44 E-value=79 Score=21.37 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=18.5
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||.+.|..++++.+.+.|.+|..
T Consensus 4 ~lItG~s~giG~~ia~~l~~~G~~Vi~ 30 (252)
T PRK07677 4 VIITGGSSGMGKAMAKRFAEEGANVVI 30 (252)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 455677777777777777777766643
No 276
>PLN02815 L-aspartate oxidase
Probab=27.40 E-value=72 Score=25.48 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
-..+.++|.+.++++ |.+|+.+++|.++
T Consensus 154 G~~i~~~L~~~~~~~~~i~i~~~~~~~~L 182 (594)
T PLN02815 154 GREIERALLEAVKNDPNITFFEHHFAIDL 182 (594)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeceEhhee
Confidence 357999999999876 8899999998875
No 277
>PRK09126 hypothetical protein; Provisional
Probab=27.28 E-value=78 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHH-hcCcEEEcCccceec
Q 044011 72 GALVNALVRGIE-KFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~-~~Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+. +.|++|+.+++|+++
T Consensus 110 ~~l~~~l~~~~~~~~g~~i~~~~~v~~~ 137 (392)
T PRK09126 110 HLIRRAAYEAVSQQDGIELLTGTRVTAV 137 (392)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCCeEEEE
Confidence 457777777765 479999999999876
No 278
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=27.26 E-value=70 Score=24.09 Aligned_cols=26 Identities=8% Similarity=0.017 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.+.+.+.+++. .+|+++++|++|
T Consensus 210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i 235 (460)
T PRK06292 210 PEVSKQAQKILSKE-FKIKLGAKVTSV 235 (460)
T ss_pred HHHHHHHHHHHhhc-cEEEcCCEEEEE
Confidence 56888889999999 999999999886
No 279
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=27.15 E-value=88 Score=20.82 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=18.2
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
....||++.|..++++.+.+.|.+|.
T Consensus 4 ~lItGa~g~iG~~l~~~l~~~g~~v~ 29 (247)
T PRK09730 4 ALVTGGSRGIGRATALLLAQEGYTVA 29 (247)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 45667777777777777777776663
No 280
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=26.97 E-value=90 Score=21.10 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=22.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||.+.|..++++.+.+.|-+|..
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~G~~V~~ 39 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQAGAEVIL 39 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHcCCEEEE
Confidence 4677788889999998888888887764
No 281
>PRK07478 short chain dehydrogenase; Provisional
Probab=26.96 E-value=76 Score=21.45 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=21.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|..++++.+.+.|.+|..
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~ 35 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVV 35 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 4667788888888888888888877654
No 282
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=26.96 E-value=87 Score=21.26 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=24.2
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|..++++.+.+.|-+|..
T Consensus 12 ~~lItG~~~gIG~a~a~~l~~~G~~vv~ 39 (253)
T PRK08993 12 VAVVTGCDTGLGQGMALGLAEAGCDIVG 39 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 5788899999999999999999988764
No 283
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=26.95 E-value=79 Score=24.89 Aligned_cols=26 Identities=12% Similarity=-0.036 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCcEEEcCccceec
Q 044011 73 ALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 73 ~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
.+.+.+++.+++.|.++++++.|.++
T Consensus 256 ~i~~~~~~y~e~kgVk~~~~t~~s~l 281 (478)
T KOG1336|consen 256 SIGQFYEDYYENKGVKFYLGTVVSSL 281 (478)
T ss_pred HHHHHHHHHHHhcCeEEEEecceeec
Confidence 57888999999999999999998875
No 284
>PRK07326 short chain dehydrogenase; Provisional
Probab=26.81 E-value=77 Score=21.03 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=22.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||.+.+..++++.+.++|-+|..
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~ 35 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAI 35 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEE
Confidence 3667788999999999998888877664
No 285
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.81 E-value=81 Score=21.12 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|..++++.+.+.|.+|..
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~ 34 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVV 34 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEE
Confidence 3677899999999999999999988754
No 286
>PRK06194 hypothetical protein; Provisional
Probab=26.64 E-value=97 Score=21.35 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=22.0
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
...+.||++.|-.++++.+.+.|.+|.
T Consensus 8 ~vlVtGasggIG~~la~~l~~~G~~V~ 34 (287)
T PRK06194 8 VAVITGAASGFGLAFARIGAALGMKLV 34 (287)
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEE
Confidence 366778888899999988888887765
No 287
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.63 E-value=94 Score=24.49 Aligned_cols=28 Identities=4% Similarity=-0.231 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHh-cCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEK-FGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~-~Gg~v~~~~~V~~I 98 (99)
...+.++|.+.+++ .|.+++.+++|.++
T Consensus 136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~L 164 (577)
T PRK06069 136 GFYIMHTLYSRALRFDNIHFYDEHFVTSL 164 (577)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCEEEEE
Confidence 45689999998877 68999999998875
No 288
>PRK08017 oxidoreductase; Provisional
Probab=26.53 E-value=88 Score=21.03 Aligned_cols=27 Identities=11% Similarity=-0.047 Sum_probs=22.4
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
..+.|+++.|..++++.+.+.|-+|..
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~ 31 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLA 31 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 567788899999999999988877654
No 289
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=26.49 E-value=80 Score=21.02 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=12.9
Q ss_pred CCcHHHHHHHHHHHHHhcCcEE
Q 044011 68 LRGSGALVNALVRGIEKFGGRL 89 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v 89 (99)
.||++.|..++++.+.+.|.+|
T Consensus 4 tGas~giG~~~a~~l~~~G~~v 25 (239)
T TIGR01831 4 TGASRGIGRAIANRLAADGFEI 25 (239)
T ss_pred eCCCchHHHHHHHHHHHCCCEE
Confidence 4555566666666666666554
No 290
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=26.44 E-value=88 Score=21.11 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=21.1
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|..++++.+.++|-+|..
T Consensus 13 ~ilItGas~~IG~~la~~l~~~G~~v~~ 40 (256)
T PRK06124 13 VALVTGSARGLGFEIARALAGAGAHVLV 40 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCeEEE
Confidence 4566788888888888888888777644
No 291
>PRK06172 short chain dehydrogenase; Provisional
Probab=26.39 E-value=92 Score=20.98 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=21.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....|+.+.|..++++.+.+.|.+|..
T Consensus 9 ~ilItGas~~iG~~ia~~l~~~G~~v~~ 36 (253)
T PRK06172 9 VALVTGGAAGIGRATALAFAREGAKVVV 36 (253)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEE
Confidence 4677788888888888888888876643
No 292
>PF04726 Microvir_J: Microvirus J protein; InterPro: IPR006815 This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic C terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions [].; GO: 0003677 DNA binding, 0019073 viral DNA genome packaging, 0019028 viral capsid; PDB: 1M06_J 1GFF_3 1RB8_J 2BPA_3.
Probab=26.37 E-value=34 Score=15.32 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=3.0
Q ss_pred CCCceeeeCCcHH
Q 044011 60 PGCSLEYPLRGSG 72 (99)
Q Consensus 60 ~~~g~~~p~GG~~ 72 (99)
.++.+||+ ||.|
T Consensus 12 kgarlwyv-gg~q 23 (24)
T PF04726_consen 12 KGARLWYV-GGTQ 23 (24)
T ss_dssp SSS----S-SS--
T ss_pred CceEEEEe-ccee
Confidence 34556775 5543
No 293
>PRK05854 short chain dehydrogenase; Provisional
Probab=26.37 E-value=74 Score=22.70 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=24.0
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||+..|-.++++.+.+.|.+|..
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil 43 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVIL 43 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 4778899999999999999999988765
No 294
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=26.35 E-value=2.1e+02 Score=19.18 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.0
Q ss_pred ceeeeCCc-HHHHHHHHHHHHHhcCcEEE
Q 044011 63 SLEYPLRG-SGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 63 g~~~p~GG-~~~l~~aL~~~i~~~Gg~v~ 90 (99)
+...+-|| ...+..+..+...+.||++.
T Consensus 32 g~~lV~GGg~~GlM~a~a~ga~~~gG~vi 60 (178)
T TIGR00730 32 GWGLVYGGGRVGLMGAIADAAMENGGTAV 60 (178)
T ss_pred CCEEEECCChHhHHHHHHHHHHhcCCeEE
Confidence 34667777 49999999999999999873
No 295
>PRK06185 hypothetical protein; Provisional
Probab=26.31 E-value=91 Score=22.85 Aligned_cols=27 Identities=7% Similarity=0.053 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 72 GALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
..+-+.|.+.+++. |.+++.+++|+++
T Consensus 108 ~~l~~~L~~~~~~~~~v~i~~~~~v~~~ 135 (407)
T PRK06185 108 WDFLDFLAEEASAYPNFTLRMGAEVTGL 135 (407)
T ss_pred HHHHHHHHHHHhhCCCcEEEeCCEEEEE
Confidence 46778888888775 8899999999875
No 296
>PRK12746 short chain dehydrogenase; Provisional
Probab=26.16 E-value=91 Score=20.97 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=22.9
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....-||++.|..++++.+.+.|-+|..
T Consensus 8 ~ilItGasg~iG~~la~~l~~~G~~v~i 35 (254)
T PRK12746 8 VALVTGASRGIGRAIAMRLANDGALVAI 35 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999888887743
No 297
>PRK08265 short chain dehydrogenase; Provisional
Probab=26.16 E-value=83 Score=21.53 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=24.3
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|-.++++.+.+.|.+|..
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~ 35 (261)
T PRK08265 8 VAIVTGGATLIGAAVARALVAAGARVAI 35 (261)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 4678899999999999999999988764
No 298
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.03 E-value=94 Score=20.61 Aligned_cols=28 Identities=11% Similarity=-0.041 Sum_probs=24.1
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|..++++.+.+.|.+|..
T Consensus 7 ~~lVtGas~~iG~~ia~~l~~~G~~v~~ 34 (235)
T PRK06550 7 TVLITGAASGIGLAQARAFLAQGAQVYG 34 (235)
T ss_pred EEEEcCCCchHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999999987753
No 299
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=26.02 E-value=55 Score=26.03 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=28.7
Q ss_pred ceeeeCCcH--HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 63 SLEYPLRGS--GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 63 g~~~p~GG~--~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+..|+-|=. ..++-+.++...++|+++++.++|+++
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~ 190 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESL 190 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeee
Confidence 346665543 377888899999999999999999876
No 300
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=25.95 E-value=55 Score=24.38 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCcEEEcCccc
Q 044011 75 VNALVRGIEKFGGRLSLRSRG 95 (99)
Q Consensus 75 ~~aL~~~i~~~Gg~v~~~~~V 95 (99)
|+-|+++++-|||.|..+|=|
T Consensus 177 ANmlA~Al~P~GG~V~wRaFV 197 (328)
T PF07488_consen 177 ANMLARALKPHGGIVIWRAFV 197 (328)
T ss_dssp HHHHHHHHGGGT-EEEEE---
T ss_pred HHHHHHHhhccCCEEEEEeEe
Confidence 566777779999999988755
No 301
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=25.92 E-value=95 Score=21.21 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=21.5
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||.+.|..++++.+.++|.+|..
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~G~~vv~ 39 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKAGATIVF 39 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEE
Confidence 4667788888888888888888877753
No 302
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=25.82 E-value=94 Score=21.03 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=24.0
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.++|-+|..
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~ 35 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVI 35 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEE
Confidence 4677899999999999999999988754
No 303
>PRK12827 short chain dehydrogenase; Provisional
Probab=25.66 E-value=89 Score=20.77 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=22.4
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||++.|..++++.+.++|-+|..
T Consensus 9 ilItGasg~iG~~la~~l~~~g~~v~~ 35 (249)
T PRK12827 9 VLITGGSGGLGRAIAVRLAADGADVIV 35 (249)
T ss_pred EEEECCCChHHHHHHHHHHHCCCeEEE
Confidence 567788889999999988888888765
No 304
>PRK09135 pteridine reductase; Provisional
Probab=25.57 E-value=98 Score=20.56 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.++|-+|..
T Consensus 8 ~vlItGa~g~iG~~l~~~l~~~g~~v~~ 35 (249)
T PRK09135 8 VALITGGARRIGAAIARTLHAAGYRVAI 35 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999999888753
No 305
>PRK06123 short chain dehydrogenase; Provisional
Probab=25.51 E-value=99 Score=20.67 Aligned_cols=26 Identities=12% Similarity=-0.132 Sum_probs=18.3
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
....||.+.|..++++.+.+.|.+|.
T Consensus 5 ~lVtG~~~~iG~~~a~~l~~~G~~vv 30 (248)
T PRK06123 5 MIITGASRGIGAATALLAAERGYAVC 30 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCeEE
Confidence 55667777777777777777776654
No 306
>PRK08303 short chain dehydrogenase; Provisional
Probab=25.49 E-value=88 Score=22.37 Aligned_cols=28 Identities=4% Similarity=0.045 Sum_probs=23.2
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
+..+.||+..|-.++++.+.+.|.+|..
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~ 37 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYV 37 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 4677888889999999999888888765
No 307
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=25.48 E-value=85 Score=25.14 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhc--------C-----cEEEcCccceec
Q 044011 71 SGALVNALVRGIEKF--------G-----GRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~--------G-----g~v~~~~~V~~I 98 (99)
...+.++|.+.++++ | .+|+.+++|.++
T Consensus 137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L 177 (626)
T PRK07803 137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITEL 177 (626)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEE
Confidence 467999999999888 7 899999999876
No 308
>PRK08862 short chain dehydrogenase; Provisional
Probab=25.47 E-value=98 Score=20.96 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=21.0
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||+..|-.++++.+.+.|.+|..
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~ 34 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLIL 34 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEE
Confidence 3566788888888888888888877655
No 309
>PRK05993 short chain dehydrogenase; Provisional
Probab=25.25 E-value=99 Score=21.40 Aligned_cols=28 Identities=14% Similarity=-0.028 Sum_probs=23.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.+.|.+|..
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~ 33 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFA 33 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 3567899999999999999999988764
No 310
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=25.17 E-value=82 Score=19.27 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=17.4
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGG 87 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg 87 (99)
....||.+.+..++++.+.+.|.
T Consensus 3 ~li~Ga~~~iG~~~~~~l~~~g~ 25 (180)
T smart00822 3 YLITGGLGGLGLELARWLAERGA 25 (180)
T ss_pred EEEEcCCChHHHHHHHHHHHhhC
Confidence 45567888888888888877776
No 311
>PRK07577 short chain dehydrogenase; Provisional
Probab=25.13 E-value=91 Score=20.64 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=23.6
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||.+.|..++++.+.+.|-+|..
T Consensus 6 vlItG~s~~iG~~ia~~l~~~G~~v~~ 32 (234)
T PRK07577 6 VLVTGATKGIGLALSLRLANLGHQVIG 32 (234)
T ss_pred EEEECCCCcHHHHHHHHHHHCCCEEEE
Confidence 567899999999999999999987754
No 312
>PRK07832 short chain dehydrogenase; Provisional
Probab=25.11 E-value=97 Score=21.30 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=15.1
Q ss_pred eeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 66 YPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 66 ~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
.+.||++.|..++++.+.+.|.+|.
T Consensus 4 lItGas~giG~~la~~la~~G~~vv 28 (272)
T PRK07832 4 FVTGAASGIGRATALRLAAQGAELF 28 (272)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCEEE
Confidence 4456666666666666666665543
No 313
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=25.08 E-value=1.1e+02 Score=20.53 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=20.5
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....|+.+.|..++++.+.+.|.+|..
T Consensus 4 vlItGa~g~lG~~l~~~l~~~g~~v~~ 30 (255)
T TIGR01963 4 ALVTGAASGIGLAIALALAAAGANVVV 30 (255)
T ss_pred EEEcCCcchHHHHHHHHHHHCCCEEEE
Confidence 456688888888888888888877654
No 314
>PRK08589 short chain dehydrogenase; Validated
Probab=25.06 E-value=98 Score=21.35 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=20.9
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|-.++++.+.+.|.+|..
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~~vi~ 35 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGAYVLA 35 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 3566788888888888888888777654
No 315
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=25.00 E-value=1e+02 Score=22.81 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
-..+-+.|.+.+++.|++++++++++++
T Consensus 102 ~~~l~~~L~~~~~~~g~~~~~~~~~v~~ 129 (390)
T TIGR02360 102 QTEVTRDLMEAREAAGLTTVYDADDVRL 129 (390)
T ss_pred HHHHHHHHHHHHHhcCCeEEEeeeeEEE
Confidence 4678888999999999999999887654
No 316
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=25.00 E-value=1e+02 Score=20.99 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.+.|.+|..
T Consensus 8 ~vlVtGas~gIG~~ia~~l~~~G~~V~~ 35 (263)
T PRK06200 8 VALITGGGSGIGRALVERFLAEGARVAV 35 (263)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999999988754
No 317
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=24.83 E-value=97 Score=20.53 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=18.2
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
..+.||++.+..++++.+.+.|.++.
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~ 28 (242)
T TIGR01829 3 ALVTGGMGGIGTAICQRLAKDGYRVA 28 (242)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEE
Confidence 34567777777777777777776654
No 318
>PRK06138 short chain dehydrogenase; Provisional
Probab=24.79 E-value=1e+02 Score=20.58 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=22.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
.....||.+.|..++++.+-+.|-+|.
T Consensus 7 ~~lItG~sg~iG~~la~~l~~~G~~v~ 33 (252)
T PRK06138 7 VAIVTGAGSGIGRATAKLFAREGARVV 33 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEE
Confidence 467789999999999999888887764
No 319
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.76 E-value=94 Score=22.05 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=21.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEcC
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSLR 92 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~ 92 (99)
...+.||.+.|-.++++.+.+.|.+|...
T Consensus 14 ~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~ 42 (306)
T PRK07792 14 VAVVTGAAAGLGRAEALGLARLGATVVVN 42 (306)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 46677888888888888888888777653
No 320
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=24.76 E-value=81 Score=22.63 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
+..|.=|+-+|-|+|++.+++.|....
T Consensus 147 IalPaqG~aEfrdaLaelle~~G~~~~ 173 (263)
T KOG3074|consen 147 IALPAQGIAEFRDALAELLEDFGEGDE 173 (263)
T ss_pred eeccchhHHHHHHHHHHHHHHhCCccc
Confidence 567888999999999999999997655
No 321
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=24.64 E-value=2.1e+02 Score=18.69 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=22.9
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
+-..-||...+..+..+...+.||++.
T Consensus 32 ~~lv~Gg~~GlM~a~a~ga~~~gg~vi 58 (159)
T TIGR00725 32 HILINGGRTGVMEAVSKGAREAGGLVV 58 (159)
T ss_pred CEEEcCCchhHHHHHHHHHHHCCCeEE
Confidence 445559999999999999999999773
No 322
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=24.62 E-value=1.1e+02 Score=20.89 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=22.8
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.+.|.+|..
T Consensus 10 ~vlItGas~gIG~~ia~~l~~~G~~v~~ 37 (260)
T PRK08416 10 TLVISGGTRGIGKAIVYEFAQSGVNIAF 37 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 3567799999999999999888888754
No 323
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=24.59 E-value=92 Score=21.19 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=25.0
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||.+.|-.++++.+.+.|.+|..
T Consensus 11 ~vlItG~s~gIG~~la~~l~~~G~~v~~ 38 (266)
T PRK06171 11 IIIVTGGSSGIGLAIVKELLANGANVVN 38 (266)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 5788899999999999999999998864
No 324
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=24.54 E-value=83 Score=20.39 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.9
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEE
Q 044011 68 LRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
-|...+|.-.|-.+++++||+=.
T Consensus 91 wGSlDalIGrLraafee~Gg~pe 113 (132)
T PF04852_consen 91 WGSLDALIGRLRAAFEEHGGHPE 113 (132)
T ss_pred hccHHHHHHHHHHHHHHhCCCCC
Confidence 38889999999999999998644
No 325
>PRK09291 short chain dehydrogenase; Provisional
Probab=24.40 E-value=1e+02 Score=20.73 Aligned_cols=27 Identities=4% Similarity=-0.017 Sum_probs=22.1
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
..+.||++.|-.++++.+.+.|.+|..
T Consensus 5 vlVtGasg~iG~~ia~~l~~~G~~v~~ 31 (257)
T PRK09291 5 ILITGAGSGFGREVALRLARKGHNVIA 31 (257)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence 567788888989998888888887764
No 326
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.39 E-value=1.1e+02 Score=20.61 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=19.4
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
....||++.|..++++.+.+.|-+|.
T Consensus 5 vlItG~sg~iG~~la~~L~~~g~~vi 30 (256)
T PRK12745 5 ALVTGGRRGIGLGIARALAAAGFDLA 30 (256)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 45568888888888888888876664
No 327
>PRK07308 flavodoxin; Validated
Probab=24.36 E-value=1e+02 Score=19.32 Aligned_cols=25 Identities=4% Similarity=0.223 Sum_probs=20.8
Q ss_pred eCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 67 PLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 67 p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.-|-+..+++++.+.+++.|.++..
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~ 35 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDV 35 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEE
Confidence 4688999999999999998876543
No 328
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=24.28 E-value=92 Score=21.33 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=18.4
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||++.|-.++++.+-+.|.+|..
T Consensus 4 ~lITGas~gIG~~~a~~l~~~G~~V~~ 30 (267)
T TIGR02685 4 AVVTGAAKRIGSSIAVALHQEGYRVVL 30 (267)
T ss_pred EEEeCCCCcHHHHHHHHHHhCCCeEEE
Confidence 455677777777777777777766654
No 329
>PRK12828 short chain dehydrogenase; Provisional
Probab=24.28 E-value=90 Score=20.55 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=23.5
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||.+.+..++++.+.+.|.+|..
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G~~v~~ 36 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARGARVAL 36 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCCCeEEE
Confidence 4677899999999999999988887654
No 330
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=24.19 E-value=1e+02 Score=20.87 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=21.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|-.++++.+.+.|.+|..
T Consensus 10 ~vlVtGas~gIG~~la~~l~~~G~~v~~ 37 (260)
T PRK12823 10 VVVVTGAAQGIGRGVALRAAAEGARVVL 37 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 3567788888888888888888877654
No 331
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=24.15 E-value=1e+02 Score=20.75 Aligned_cols=27 Identities=4% Similarity=0.111 Sum_probs=21.6
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
...+.||++.|..++++.+.++|.+|.
T Consensus 9 ~vlItGasg~iG~~la~~l~~~G~~v~ 35 (262)
T PRK13394 9 TAVVTGAASGIGKEIALELARAGAAVA 35 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEE
Confidence 467778888888888888888887775
No 332
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=24.02 E-value=1.1e+02 Score=20.66 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=19.0
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
..+.||.+.|..++++.+.+.|-+|.
T Consensus 5 ilItG~~~~IG~~la~~l~~~g~~vi 30 (259)
T PRK12384 5 AVVIGGGQTLGAFLCHGLAEEGYRVA 30 (259)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 45667778888888888777776654
No 333
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=24.01 E-value=1.1e+02 Score=20.99 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=20.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||.+.|..++++.+.+.|.+|..
T Consensus 12 ~vlVtGas~giG~~ia~~l~~~G~~V~~ 39 (278)
T PRK08277 12 VAVITGGGGVLGGAMAKELARAGAKVAI 39 (278)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 4666788888888888888777776653
No 334
>PRK12937 short chain dehydrogenase; Provisional
Probab=24.00 E-value=1.1e+02 Score=20.35 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=20.1
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
.....||.+.|..++++.+.+.|.++.
T Consensus 7 ~vlItG~~~~iG~~la~~l~~~g~~v~ 33 (245)
T PRK12937 7 VAIVTGASRGIGAAIARRLAADGFAVA 33 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 356678888888888888888877764
No 335
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.93 E-value=1.1e+02 Score=20.73 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=21.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
.....||.+.|..++++.+.++|.+|.
T Consensus 17 ~vlItGas~gIG~~ia~~l~~~G~~v~ 43 (258)
T PRK06935 17 VAIVTGGNTGLGQGYAVALAKAGADII 43 (258)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 467778888888888888888887764
No 336
>PRK09186 flagellin modification protein A; Provisional
Probab=23.86 E-value=1e+02 Score=20.66 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=21.2
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.+.|-+|..
T Consensus 6 ~vlItGas~giG~~~a~~l~~~g~~v~~ 33 (256)
T PRK09186 6 TILITGAGGLIGSALVKAILEAGGIVIA 33 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 3566788888888888888888877654
No 337
>PRK07035 short chain dehydrogenase; Provisional
Probab=23.86 E-value=1.1e+02 Score=20.60 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=20.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
...+.||++.|..++++.+.+.|-+|.
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi 36 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVI 36 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 456678888888888888888877664
No 338
>PRK06500 short chain dehydrogenase; Provisional
Probab=23.80 E-value=1.1e+02 Score=20.40 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=22.5
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.|+++.|..++++.+.+.|-+|..
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~v~~ 35 (249)
T PRK06500 8 TALITGGTSGIGLETARQFLAEGARVAI 35 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 4677888899999999988888877653
No 339
>PRK08177 short chain dehydrogenase; Provisional
Probab=23.77 E-value=1.1e+02 Score=20.32 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=22.6
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||++.+..++++.+.+.|-+|..
T Consensus 4 vlItG~sg~iG~~la~~l~~~G~~V~~ 30 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLERGWQVTA 30 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhCCCEEEE
Confidence 466799999999999999999887763
No 340
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.75 E-value=1.1e+02 Score=20.54 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=18.9
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
..+.||++.|..++++.+-+.|.+|.
T Consensus 4 vlItGas~giG~~~a~~l~~~G~~Vi 29 (243)
T PRK07102 4 ILIIGATSDIARACARRYAAAGARLY 29 (243)
T ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEE
Confidence 45667788888888888877776654
No 341
>PRK07985 oxidoreductase; Provisional
Probab=23.73 E-value=91 Score=21.97 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=25.5
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||.+.|..++++.+.+.|.+|..
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~ 78 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAI 78 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEE
Confidence 5788999999999999999999999875
No 342
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=23.73 E-value=1.2e+02 Score=18.26 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhcCcEEE
Q 044011 71 SGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~ 90 (99)
..++.+.+.+.+.+.||+|.
T Consensus 19 ~~~~~~~~~~~i~~~gg~i~ 38 (108)
T PRK00453 19 VKALVERFKGVITENGGTIH 38 (108)
T ss_pred HHHHHHHHHHHHHHCCCEEE
Confidence 56788888899999999985
No 343
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=23.72 E-value=65 Score=23.79 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHhcCcEEEcCccc
Q 044011 70 GSGALVNALVRGIEKFGGRLSLRSRG 95 (99)
Q Consensus 70 G~~~l~~aL~~~i~~~Gg~v~~~~~V 95 (99)
|++.|-++++++++..|-+|.+-.+-
T Consensus 153 G~GrIG~avA~r~~~Fgm~v~y~~~~ 178 (324)
T COG1052 153 GLGRIGQAVARRLKGFGMKVLYYDRS 178 (324)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEECCC
Confidence 89999999999999999998876543
No 344
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.70 E-value=1.1e+02 Score=20.48 Aligned_cols=28 Identities=7% Similarity=0.162 Sum_probs=21.8
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.+..++++.+.+.|-+|..
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~ 33 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVI 33 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEE
Confidence 3567788888888888888888877653
No 345
>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis []. This domain lies just downstream of IPR004182 from INTERPRO in many sequences.
Probab=23.70 E-value=1e+02 Score=19.20 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.5
Q ss_pred eeeeCCcHHHHHHHHHHHHHhc
Q 044011 64 LEYPLRGSGALVNALVRGIEKF 85 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~ 85 (99)
+.+-.||.-.+.++|++..+..
T Consensus 13 ltFk~GGAieFgq~~~~~~~~a 34 (116)
T PF10349_consen 13 LTFKSGGAIEFGQAMLRLAERA 34 (116)
T ss_pred EEeCCCChHHHHHHHHHHHHHH
Confidence 4677899999999999987763
No 346
>PRK05872 short chain dehydrogenase; Provisional
Probab=23.67 E-value=1.1e+02 Score=21.55 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.8
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|-.++++.+.+.|.+|..
T Consensus 11 ~vlItGas~gIG~~ia~~l~~~G~~V~~ 38 (296)
T PRK05872 11 VVVVTGAARGIGAELARRLHARGAKLAL 38 (296)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999999988753
No 347
>PRK06197 short chain dehydrogenase; Provisional
Probab=23.56 E-value=92 Score=21.90 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=24.2
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....+.||.+.|..++++.+.+.|.+|..
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~ 45 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVL 45 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEE
Confidence 35778899999999999999999988653
No 348
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=23.54 E-value=80 Score=22.86 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=25.3
Q ss_pred eeeeCCc--HHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRG--SGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG--~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
+..+-|+ +..|-.++++.+.+.|.+|..
T Consensus 11 ~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 11 RAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 5778899 799999999999999999987
No 349
>PRK12829 short chain dehydrogenase; Provisional
Probab=23.48 E-value=97 Score=20.87 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=24.5
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
......||.+.|..++++.+.+.|-+|..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~ 40 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHV 40 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEE
Confidence 35778899999999999999999987743
No 350
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.45 E-value=1.2e+02 Score=18.62 Aligned_cols=57 Identities=23% Similarity=0.155 Sum_probs=33.3
Q ss_pred cCcHHHHHhcCCCCCHHHHHHHHH-HHHHhcCCCCCchhHHHHHHHHHHHhCCCCceeee
Q 044011 9 LRPFSDIIDSLELKDPFVRNWIDL-LAFLLAGVKSNGILSAEMVYMFAEWYKPGCSLEYP 67 (99)
Q Consensus 9 ~~s~~~~l~~~~f~~~~l~~~l~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~p 67 (99)
..++.+|+++ ++|...++.++. .--.-.|.|.+--|-...++-+-.-+..|..+||.
T Consensus 9 ~d~F~~W~~k--LkD~~Aka~I~~Rl~rl~~GN~GD~kpvgeGV~ELRId~GpGyRvY~~ 66 (100)
T COG3657 9 TDTFSEWLKK--LKDRRAKAKIAARLDRLALGNFGDVKPVGEGVSELRIDHGPGYRVYFQ 66 (100)
T ss_pred hHHHHHHHHH--HHhHHHHHHHHHHHHHHhcCCCcCccccccchhhheeccCCceEEEEE
Confidence 4578899999 789888876653 21123456666556555554444433444445555
No 351
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=23.45 E-value=1.1e+02 Score=20.27 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=21.0
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRL 89 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v 89 (99)
.....||++.+..++++.+.+.|-+|
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v 32 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANV 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEE
Confidence 35677888888888888888888776
No 352
>PRK08628 short chain dehydrogenase; Provisional
Probab=23.39 E-value=93 Score=21.03 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=22.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|..++++.+-+.|.++..
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~~ 36 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVI 36 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEEE
Confidence 4677788889999999998888887654
No 353
>PRK06483 dihydromonapterin reductase; Provisional
Probab=23.38 E-value=1.1e+02 Score=20.40 Aligned_cols=27 Identities=11% Similarity=-0.056 Sum_probs=22.0
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||.+.|..++++.+.+.|.+|..
T Consensus 5 vlItGas~gIG~~ia~~l~~~G~~V~~ 31 (236)
T PRK06483 5 ILITGAGQRIGLALAWHLLAQGQPVIV 31 (236)
T ss_pred EEEECCCChHHHHHHHHHHHCCCeEEE
Confidence 456788899999999998888888754
No 354
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=23.29 E-value=1.1e+02 Score=23.07 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.5
Q ss_pred eeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 66 YPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 66 ~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.-.||.+..+.+|.+.+.+.|-+|+.
T Consensus 14 ~k~GGl~~~v~~L~~aL~~~G~~v~v 39 (473)
T TIGR02095 14 AKTGGLADVVGALPKALAALGHDVRV 39 (473)
T ss_pred cCcCcHHHHHHHHHHHHHHcCCeEEE
Confidence 34799999999999999999987753
No 355
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=23.29 E-value=1e+02 Score=21.99 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=26.4
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEEEcCc
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRLSLRS 93 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v~~~~ 93 (99)
-+-++-||+..|-.+++..+-++|.+|....
T Consensus 9 kvalVTG~s~GIG~aia~~la~~Ga~v~i~~ 39 (270)
T KOG0725|consen 9 KVALVTGGSSGIGKAIALLLAKAGAKVVITG 39 (270)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 3578889999999999999999999987543
No 356
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=23.22 E-value=1e+02 Score=20.30 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=5.3
Q ss_pred HHHHHHhcCcEE
Q 044011 78 LVRGIEKFGGRL 89 (99)
Q Consensus 78 L~~~i~~~Gg~v 89 (99)
+.+.+++.|+++
T Consensus 39 ~~~~~~~~~~~~ 50 (239)
T TIGR01830 39 VVEELKAYGVKA 50 (239)
T ss_pred HHHHHHhcCCce
Confidence 344444444433
No 357
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=23.20 E-value=60 Score=17.29 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCcEEEcC
Q 044011 75 VNALVRGIEKFGGRLSLR 92 (99)
Q Consensus 75 ~~aL~~~i~~~Gg~v~~~ 92 (99)
-+.|.+.++.+||++..+
T Consensus 13 ~~~l~~~i~~~Gg~~~~~ 30 (63)
T PF12738_consen 13 RSQLRKLIEALGGKYSKD 30 (63)
T ss_dssp CCHHHHHHHCTT-EEESS
T ss_pred HHHHHHHHHHCCCEEecc
Confidence 457888899999988654
No 358
>PRK07890 short chain dehydrogenase; Provisional
Probab=23.13 E-value=95 Score=20.88 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=21.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||.+.|..++++.+.+.|-+|..
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~G~~V~~ 34 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARAGADVVL 34 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEE
Confidence 3567788888888888888888877653
No 359
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=23.11 E-value=99 Score=16.69 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCcE
Q 044011 72 GALVNALVRGIEKFGGR 88 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~ 88 (99)
+.+-..+.++|+++||+
T Consensus 40 qem~aefheri~klggk 56 (59)
T PF07384_consen 40 QEMQAEFHERIKKLGGK 56 (59)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 34445567788888885
No 360
>PRK00654 glgA glycogen synthase; Provisional
Probab=23.06 E-value=1.1e+02 Score=23.20 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEE
Q 044011 68 LRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
.||.+-.+.+|.+.+.+.|-+|+
T Consensus 16 ~GGl~~~v~~L~~~L~~~G~~V~ 38 (466)
T PRK00654 16 TGGLGDVVGALPKALAALGHDVR 38 (466)
T ss_pred cCcHHHHHHHHHHHHHHCCCcEE
Confidence 79999999999999999997665
No 361
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.02 E-value=90 Score=20.72 Aligned_cols=27 Identities=19% Similarity=-0.006 Sum_probs=21.2
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||.+.+..++++.+.+.|-+|..
T Consensus 8 vlItGa~g~iG~~~a~~l~~~G~~V~~ 34 (238)
T PRK05786 8 VAIIGVSEGLGYAVAYFALKEGAQVCI 34 (238)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 566788888888888888888877654
No 362
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=23.02 E-value=1.1e+02 Score=20.54 Aligned_cols=27 Identities=4% Similarity=0.023 Sum_probs=19.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
.....||.+.|..++++.+.+.|.+|.
T Consensus 14 ~vlItG~~g~iG~~la~~l~~~G~~Vi 40 (247)
T PRK08945 14 IILVTGAGDGIGREAALTYARHGATVI 40 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCcEE
Confidence 466678888888888888777776653
No 363
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=22.99 E-value=89 Score=20.02 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCcEEEcC
Q 044011 75 VNALVRGIEKFGGRLSLR 92 (99)
Q Consensus 75 ~~aL~~~i~~~Gg~v~~~ 92 (99)
.++-.+++++.||+|...
T Consensus 82 id~~l~rv~~~GG~V~~p 99 (127)
T COG3324 82 IDATLERVVAAGGKVLRP 99 (127)
T ss_pred hHHHHHHHHhcCCeEEec
Confidence 456677789999999754
No 364
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=22.90 E-value=60 Score=22.65 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=21.7
Q ss_pred eeCCcHHHHHHHH-HHHHHhcCcEEEcCccceec
Q 044011 66 YPLRGSGALVNAL-VRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 66 ~p~GG~~~l~~aL-~~~i~~~Gg~v~~~~~V~~I 98 (99)
.+.|-=..-..+. ....+.-|-+|+++++|++|
T Consensus 186 ~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i 219 (296)
T PF00732_consen 186 CPNGARSSAATTYLPPALKRPNLTLLTNARVTRI 219 (296)
T ss_dssp ECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEE
T ss_pred ccchhceehhhcccchhhccCCccEEcCcEEEEE
Confidence 3444444444554 44444449999999999998
No 365
>PRK06703 flavodoxin; Provisional
Probab=22.87 E-value=1.1e+02 Score=19.22 Aligned_cols=23 Identities=4% Similarity=0.192 Sum_probs=20.3
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEE
Q 044011 68 LRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
-|-+..+++++++.+++.|.++.
T Consensus 12 tGnT~~iA~~ia~~l~~~g~~v~ 34 (151)
T PRK06703 12 SGNTEDIADLIKVSLDAFDHEVV 34 (151)
T ss_pred CchHHHHHHHHHHHHHhcCCceE
Confidence 58899999999999999987765
No 366
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=22.74 E-value=1.8e+02 Score=17.55 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=3.9
Q ss_pred ceeeeCCcH
Q 044011 63 SLEYPLRGS 71 (99)
Q Consensus 63 g~~~p~GG~ 71 (99)
|+-|-.|.|
T Consensus 32 Gl~y~~~pm 40 (97)
T TIGR00106 32 GLKYELHPM 40 (97)
T ss_pred CCCeEecCC
Confidence 344544433
No 367
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=22.71 E-value=1e+02 Score=23.93 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 73 ALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 73 ~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
.+-+.|.+.++++ |.+|+++++|++|
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i 152 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGL 152 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEE
Confidence 4567788888887 6799999999876
No 368
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.62 E-value=1.1e+02 Score=21.35 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.5
Q ss_pred eCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 67 PLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 67 p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
..||+...+..|++.+.++|-+|..
T Consensus 13 ~~gG~~~~~~~la~~L~~~g~~v~v 37 (363)
T cd04955 13 KYGGFETFVEELAPRLVARGHEVTV 37 (363)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCEEE
Confidence 4699999999999999999976643
No 369
>PRK08267 short chain dehydrogenase; Provisional
Probab=22.60 E-value=1.2e+02 Score=20.57 Aligned_cols=27 Identities=11% Similarity=-0.005 Sum_probs=21.7
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||++.|..++++.+-+.|-+|..
T Consensus 4 vlItGasg~iG~~la~~l~~~G~~V~~ 30 (260)
T PRK08267 4 IFITGAASGIGRATALLFAAEGWRVGA 30 (260)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEE
Confidence 456788899999999988888877653
No 370
>PRK07074 short chain dehydrogenase; Provisional
Probab=22.59 E-value=1.2e+02 Score=20.43 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=20.9
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
..+.||.+.|..++++.+.+.|.+|..
T Consensus 5 ilItGat~~iG~~la~~L~~~g~~v~~ 31 (257)
T PRK07074 5 ALVTGAAGGIGQALARRFLAAGDRVLA 31 (257)
T ss_pred EEEECCcchHHHHHHHHHHHCCCEEEE
Confidence 566788888888888888888877644
No 371
>PF08310 LGFP: LGFP repeat; InterPro: IPR013207 This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from Corynebacterium glutamicum (Brevibacterium flavum) and Corynebacterium efficiens along with PS1 protein contain this repeat region. The N-terminal region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminal region consists of 4 tandem LGFP repeats. It is hypothesised that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity. Deletion of Q01377 from SWISSPROT protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding involvement of the protein in the cell shape formation []. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix.
Probab=22.57 E-value=32 Score=18.28 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.1
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGR 88 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~ 88 (99)
.|.|..|...+.-++.++.+++|++
T Consensus 27 ywsp~tGa~~v~G~I~~~w~~~G~e 51 (54)
T PF08310_consen 27 YWSPATGAHAVHGAILDKWAALGGE 51 (54)
T ss_pred EEeCCCCcEEECHHHHHHHHHhCCC
Confidence 3677888888889999999999875
No 372
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.50 E-value=1.3e+02 Score=20.00 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=21.3
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.+..++++.+.+.|-++..
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~ 34 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVI 34 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 3567788888888888888888777643
No 373
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=22.49 E-value=1.1e+02 Score=22.26 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcC-cEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFG-GRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~G-g~v~~~~~V~~I 98 (99)
-..|-++|.+.+++.+ .+++++++|++|
T Consensus 103 r~~L~~~L~~~~~~~~~v~~~~~~~v~~i 131 (374)
T PRK06617 103 NSDFKKILLSKITNNPLITLIDNNQYQEV 131 (374)
T ss_pred HHHHHHHHHHHHhcCCCcEEECCCeEEEE
Confidence 3678999999999986 788999999876
No 374
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=22.46 E-value=79 Score=22.17 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=18.0
Q ss_pred CcHHHHHHHHHHHHHhcCcEEEcCc
Q 044011 69 RGSGALVNALVRGIEKFGGRLSLRS 93 (99)
Q Consensus 69 GG~~~l~~aL~~~i~~~Gg~v~~~~ 93 (99)
.-..+=-++|++.++++|.+|+.-.
T Consensus 28 ~~a~~e~~~l~~~L~~~Gv~V~~~~ 52 (281)
T PF02274_consen 28 EKAREEHDALVEALRSNGVEVIELP 52 (281)
T ss_dssp HHHHHHHHHHHHHHHTTT-EEEEEH
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3345556789999999999997643
No 375
>PRK12939 short chain dehydrogenase; Provisional
Probab=22.39 E-value=1.2e+02 Score=20.19 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=20.8
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||.+.|..++++.+.+.|-+|..
T Consensus 10 vlItGa~g~iG~~la~~l~~~G~~v~~ 36 (250)
T PRK12939 10 ALVTGAARGLGAAFAEALAEAGATVAF 36 (250)
T ss_pred EEEeCCCChHHHHHHHHHHHcCCEEEE
Confidence 566788888888888888888877643
No 376
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=22.36 E-value=1.2e+02 Score=20.22 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=21.5
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||++.+..++++.+.++|-+|..
T Consensus 9 ilItGasg~iG~~l~~~l~~~g~~V~~ 35 (251)
T PRK12826 9 ALVTGAARGIGRAIAVRLAADGAEVIV 35 (251)
T ss_pred EEEcCCCCcHHHHHHHHHHHCCCEEEE
Confidence 566788888888888888888877643
No 377
>PRK07825 short chain dehydrogenase; Provisional
Probab=22.24 E-value=1.1e+02 Score=20.93 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.1
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|..++++.+.+.|-+|..
T Consensus 7 ~ilVtGasggiG~~la~~l~~~G~~v~~ 34 (273)
T PRK07825 7 VVAITGGARGIGLATARALAALGARVAI 34 (273)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999999988754
No 378
>PRK06125 short chain dehydrogenase; Provisional
Probab=22.22 E-value=1.2e+02 Score=20.60 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=20.5
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||.+.|..++++.+.++|.+|..
T Consensus 9 ~vlItG~~~giG~~ia~~l~~~G~~V~~ 36 (259)
T PRK06125 9 RVLITGASKGIGAAAAEAFAAEGCHLHL 36 (259)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEE
Confidence 4566788888888888888887776643
No 379
>PRK12743 oxidoreductase; Provisional
Probab=22.09 E-value=1.2e+02 Score=20.55 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=17.9
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
..+.||++.|..++++.+.++|-+|.
T Consensus 5 vlItGas~giG~~~a~~l~~~G~~V~ 30 (256)
T PRK12743 5 AIVTASDSGIGKACALLLAQQGFDIG 30 (256)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEE
Confidence 45567777777777777777776663
No 380
>PRK08071 L-aspartate oxidase; Provisional
Probab=21.95 E-value=95 Score=24.11 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
..+.++|.+.++ .|.+|+.+++|.++
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~L 155 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDL 155 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhhe
Confidence 568999999887 69999999999875
No 381
>PRK08278 short chain dehydrogenase; Provisional
Probab=21.85 E-value=1.3e+02 Score=20.82 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=22.4
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|..++++.+.++|.+|..
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~ 35 (273)
T PRK08278 8 TLFITGASRGIGLAIALRAARDGANIVI 35 (273)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 4677788888888888888888887754
No 382
>PF04845 PurA: PurA ssDNA and RNA-binding protein; InterPro: IPR006628 The Pur protein family consists of four known members in humans and is strongly conserved throughout evolution. Pur-alpha is a highly conserved, sequence-specific DNA- and RNA-binding protein involved in diverse cellular and viral functions including transcription, replication, and cell growth. Pur-alpha has a modular structure with alternating three basic aromatic class I and two acidic leucine-rich class II repeats in the central region of the protein []. In addition to its involved in basic cellular function, Pur-alpha, has been implicated in the development of blood cells and cells of the central nervous system; it has also been implicated in the inhibition of oncogenic transformation and along with Pur-beta in myelodysplastic syndrome progressing to acute myelogenous leukemia. Pur-alpha can influence viral interaction through functional associations, for example with the Tat protein and TAR RNA of HIV-1, and with large T-antigen and DNA regulatory regions of JC virus. JC virus causes opportunistic infections in the brains of certain HIV-1-infected individuals [].; PDB: 3K44_A.
Probab=21.79 E-value=1.1e+02 Score=21.57 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=21.3
Q ss_pred ceeeeCCcHHHHHHHHHHHHHhcCcEE
Q 044011 63 SLEYPLRGSGALVNALVRGIEKFGGRL 89 (99)
Q Consensus 63 g~~~p~GG~~~l~~aL~~~i~~~Gg~v 89 (99)
.+..|.=|+..+-+||.+.+.++|..-
T Consensus 124 qIaiPa~G~~ef~~al~~lid~~g~~~ 150 (218)
T PF04845_consen 124 QIAIPAQGMIEFRDALTDLIDEFGEDD 150 (218)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHH----
T ss_pred EEEEehHHHHHHHHHHHHHHHHhcCcc
Confidence 368899999999999999999999743
No 383
>PRK08251 short chain dehydrogenase; Provisional
Probab=21.76 E-value=1.3e+02 Score=20.19 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=20.3
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
....||++.|..++++.+-+.|-+|.
T Consensus 5 vlItGas~giG~~la~~l~~~g~~v~ 30 (248)
T PRK08251 5 ILITGASSGLGAGMAREFAAKGRDLA 30 (248)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 56678888888888888888876654
No 384
>PRK05693 short chain dehydrogenase; Provisional
Probab=21.73 E-value=1.2e+02 Score=20.79 Aligned_cols=27 Identities=15% Similarity=0.010 Sum_probs=22.3
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
..+.||++.|..++++.+.+.|-+|..
T Consensus 4 vlItGasggiG~~la~~l~~~G~~V~~ 30 (274)
T PRK05693 4 VLITGCSSGIGRALADAFKAAGYEVWA 30 (274)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEE
Confidence 456788999999999999988888764
No 385
>PRK06953 short chain dehydrogenase; Provisional
Probab=21.70 E-value=99 Score=20.48 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=21.4
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||.+.|..++++.+.+.|-+|..
T Consensus 4 vlvtG~sg~iG~~la~~L~~~G~~v~~ 30 (222)
T PRK06953 4 VLIVGASRGIGREFVRQYRADGWRVIA 30 (222)
T ss_pred EEEEcCCCchhHHHHHHHHhCCCEEEE
Confidence 456788888888898888888877654
No 386
>PRK09242 tropinone reductase; Provisional
Probab=21.69 E-value=1.3e+02 Score=20.33 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=22.8
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|..++++.+.+.|-+|..
T Consensus 11 ~~lItGa~~gIG~~~a~~l~~~G~~v~~ 38 (257)
T PRK09242 11 TALITGASKGIGLAIAREFLGLGADVLI 38 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEE
Confidence 4677788899999999999888887753
No 387
>PRK07904 short chain dehydrogenase; Provisional
Probab=21.55 E-value=1e+02 Score=21.14 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=21.0
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCc-EEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGG-RLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg-~v~~ 91 (99)
-..-||++.|-.++++.+.+.|| +|..
T Consensus 11 vlItGas~giG~~la~~l~~~gg~~V~~ 38 (253)
T PRK07904 11 ILLLGGTSEIGLAICERYLKNAPARVVL 38 (253)
T ss_pred EEEEcCCcHHHHHHHHHHHhcCCCeEEE
Confidence 55679999999999999888864 5543
No 388
>PRK07775 short chain dehydrogenase; Provisional
Probab=21.51 E-value=1.2e+02 Score=20.85 Aligned_cols=27 Identities=11% Similarity=-0.022 Sum_probs=19.7
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
...+.||++.|..++++.+.+.|-+|.
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~ 38 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVA 38 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEE
Confidence 356667777888888887777777664
No 389
>PRK09077 L-aspartate oxidase; Provisional
Probab=21.40 E-value=1.1e+02 Score=23.89 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhc-CcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKF-GGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~-Gg~v~~~~~V~~I 98 (99)
-..+.+.|.+.++++ |.+|+.+++|.++
T Consensus 137 G~~i~~~L~~~~~~~~~I~v~~~~~v~~L 165 (536)
T PRK09077 137 GKAVQTTLVERARNHPNITVLERHNAIDL 165 (536)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeEEeeee
Confidence 357889999988876 8999999998764
No 390
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=21.20 E-value=1.5e+02 Score=18.43 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 68 LRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
+-.+..+++++++.+.+.|.+|..
T Consensus 50 R~~s~~~~~~~~~~l~~~G~~V~~ 73 (137)
T PF02878_consen 50 RPSSPMLAKALAAGLRANGVDVID 73 (137)
T ss_dssp STTHHHHHHHHHHHHHHTTEEEEE
T ss_pred cCCHHHHHHHHHHHHhhccccccc
Confidence 467999999999999999999863
No 391
>PRK07576 short chain dehydrogenase; Provisional
Probab=20.99 E-value=1.3e+02 Score=20.60 Aligned_cols=28 Identities=7% Similarity=0.222 Sum_probs=22.5
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||++.|..++++.+.+.|-+|..
T Consensus 11 ~ilItGasggIG~~la~~l~~~G~~V~~ 38 (264)
T PRK07576 11 NVVVVGGTSGINLGIAQAFARAGANVAV 38 (264)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 4677788889999999888888877654
No 392
>PRK07024 short chain dehydrogenase; Provisional
Probab=20.97 E-value=1.2e+02 Score=20.63 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=20.9
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||++.|..++++.+.+.|-+|..
T Consensus 5 vlItGas~gIG~~la~~l~~~G~~v~~ 31 (257)
T PRK07024 5 VFITGASSGIGQALAREYARQGATLGL 31 (257)
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCEEEE
Confidence 456788888888888888888876653
No 393
>PRK08401 L-aspartate oxidase; Provisional
Probab=20.94 E-value=1.2e+02 Score=23.14 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhcCcEEEcCccceec
Q 044011 71 SGALVNALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 71 ~~~l~~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
...+.++|.+.+++.|.+++.+ +|+++
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l 145 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEEL 145 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEE
Confidence 4679999999999999999875 66654
No 394
>PF04806 EspF: EspF protein repeat; InterPro: IPR006891 Enteropathogenic Escherichia coli O127:H6 attaches to the intestinal muscosa through actin pedestals that are created after it has injected the Type III secretion protein EspF (E. coli secreted protein F-like protein from prophage U) into the cells. EspF recruits the actin machinery by activating the WASP (Wiscott-Aldrich syndrome protein) family of actin nucleating factors []. Subsequent cell-death (apoptosis) is caused by EspF being targeted to the mitochondria as a consequence of its mitochondrial targeting sequence. Import into mitochondria leads to a loss of membrane potential, leakage of cytochrome c and activation of the apoptotic caspase cascade. Mutation of leucine to glutamic at position 16 of EspF (L16E) resulted in the failure of EspF import into mitochondria; mitochondrial membrane potential was not affected and cell death abolished. This suggests that the targeting of EspF to mitochondria is essential for bacterial pathogenesis and apoptosis [, ].; PDB: 2KXC_B 2K42_B.
Probab=20.90 E-value=1e+02 Score=16.08 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhcC
Q 044011 73 ALVNALVRGIEKFG 86 (99)
Q Consensus 73 ~l~~aL~~~i~~~G 86 (99)
-++++|.+.+.+||
T Consensus 34 ~vaq~l~~hla~hg 47 (47)
T PF04806_consen 34 PVAQRLKDHLAEHG 47 (47)
T ss_dssp SHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhcC
Confidence 47788888887776
No 395
>PRK06720 hypothetical protein; Provisional
Probab=20.85 E-value=1.4e+02 Score=19.58 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=19.4
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||.+.|..++++.+.+.|.+|..
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l 45 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIV 45 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEE
Confidence 4566677777777777777777766643
No 396
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=20.84 E-value=1.5e+02 Score=19.95 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=21.4
Q ss_pred eCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 67 PLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 67 p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
+.||....+..|++.+.+.|-+|..
T Consensus 11 ~~gG~~~~~~~l~~~L~~~g~~v~v 35 (348)
T cd03820 11 NAGGAERVLSNLANALAEKGHEVTI 35 (348)
T ss_pred CCCChHHHHHHHHHHHHhCCCeEEE
Confidence 3899999999999999988877754
No 397
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.80 E-value=1.1e+02 Score=20.81 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=24.0
Q ss_pred eeeeCCcH--HHHHHHHHHHHHhcCcEEEcC
Q 044011 64 LEYPLRGS--GALVNALVRGIEKFGGRLSLR 92 (99)
Q Consensus 64 ~~~p~GG~--~~l~~aL~~~i~~~Gg~v~~~ 92 (99)
.....||+ ..|-.++++.+-+.|.+|...
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 46777888 789999999999999888754
No 398
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=20.77 E-value=1.3e+02 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCccceecC
Q 044011 72 GALVNALVRGIEKFGGRLSLRSRGKDSS 99 (99)
Q Consensus 72 ~~l~~aL~~~i~~~Gg~v~~~~~V~~I~ 99 (99)
..+++++.+.++..|=+.+++++|..++
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~ 279 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSAT 279 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEee
Confidence 5799999999999999999999998753
No 399
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=20.75 E-value=1.4e+02 Score=19.99 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=20.0
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
....||.+.|..++++.+-+.|-+|.
T Consensus 8 vlItGas~gIG~~ia~~l~~~G~~vi 33 (248)
T TIGR01832 8 ALVTGANTGLGQGIAVGLAEAGADIV 33 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEE
Confidence 56678888888888888888877665
No 400
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=20.75 E-value=1.4e+02 Score=15.13 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=16.4
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHHH
Q 044011 10 RPFSDIIDSLELKDPFVRNWIDLL 33 (99)
Q Consensus 10 ~s~~~~l~~~~f~~~~l~~~l~~~ 33 (99)
-++.++++. ++||.+++-+...
T Consensus 11 ~gl~gl~~~--l~DpdvqrgL~~l 32 (42)
T PF07849_consen 11 VGLFGLLRA--LRDPDVQRGLGFL 32 (42)
T ss_pred CCHHHHHHH--HcCHHHHHHHHHH
Confidence 356777777 7899998877654
No 401
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=20.72 E-value=1.2e+02 Score=19.29 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.8
Q ss_pred eCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 67 PLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 67 p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
..|+++.+...+++.+.+.|-+|+.
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~ 27 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTA 27 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEE
T ss_pred EECCCChHHHHHHHHHHHCCCEEEE
Confidence 4689999999999999999987764
No 402
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=20.63 E-value=1.1e+02 Score=21.98 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=22.8
Q ss_pred eeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 66 YPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 66 ~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
++.||....+..+.+.+++.|-++..
T Consensus 9 ~~~GGv~~~~~~l~~~l~~~g~~v~~ 34 (372)
T cd03792 9 PYGGGVAEILHSLVPLMRDLGVDTRW 34 (372)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCCceE
Confidence 46799999999999999999988765
No 403
>PRK06181 short chain dehydrogenase; Provisional
Probab=20.54 E-value=1.5e+02 Score=20.10 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=16.0
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
..+.||++.|..++++.+.+.|.+|.
T Consensus 4 vlVtGasg~iG~~la~~l~~~g~~Vi 29 (263)
T PRK06181 4 VIITGASEGIGRALAVRLARAGAQLV 29 (263)
T ss_pred EEEecCCcHHHHHHHHHHHHCCCEEE
Confidence 34456666666666666666665553
No 404
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.52 E-value=1.4e+02 Score=19.80 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=18.1
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
..+.||.+.|..++++.+.+.|.+|.
T Consensus 8 ~lItG~~g~iG~~~a~~l~~~G~~vi 33 (253)
T PRK08217 8 IVITGGAQGLGRAMAEYLAQKGAKLA 33 (253)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEE
Confidence 55667777777777777777776553
No 405
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=20.39 E-value=1e+02 Score=21.51 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.1
Q ss_pred CCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 68 LRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 68 ~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.||....+..|.+.+.+.|-+|..
T Consensus 11 ~gG~~~~~~~l~~~L~~~g~~v~v 34 (360)
T cd04951 11 LGGAEKQVVDLADQFVAKGHQVAI 34 (360)
T ss_pred CCCHHHHHHHHHHhcccCCceEEE
Confidence 699999999999999998877753
No 406
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=20.36 E-value=1.4e+02 Score=19.81 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=22.8
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....||.+.|..++++.+.+.|..|..
T Consensus 8 ~vlItGa~g~iG~~la~~l~~~g~~v~~ 35 (245)
T PRK12936 8 KALVTGASGGIGEEIARLLHAQGAIVGL 35 (245)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 4677899999999999999888877643
No 407
>PRK05876 short chain dehydrogenase; Provisional
Probab=20.36 E-value=1.4e+02 Score=20.81 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=18.6
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
..+.||++.|-.++++.+.+.|-+|.
T Consensus 9 vlVTGas~gIG~ala~~La~~G~~Vv 34 (275)
T PRK05876 9 AVITGGASGIGLATGTEFARRGARVV 34 (275)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 45667777777777777777776665
No 408
>PRK09134 short chain dehydrogenase; Provisional
Probab=20.34 E-value=1.5e+02 Score=20.09 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=21.9
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
.....|+++.|..++++.+.+.|.++..
T Consensus 11 ~vlItGas~giG~~la~~l~~~g~~v~~ 38 (258)
T PRK09134 11 AALVTGAARRIGRAIALDLAAHGFDVAV 38 (258)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 4667788888888888888888877753
No 409
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=20.33 E-value=1.1e+02 Score=22.28 Aligned_cols=23 Identities=4% Similarity=-0.188 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCcEEEcCccceec
Q 044011 76 NALVRGIEKFGGRLSLRSRGKDS 98 (99)
Q Consensus 76 ~aL~~~i~~~Gg~v~~~~~V~~I 98 (99)
+.+.+.++++|.++++++.|.+|
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i 236 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRI 236 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceee
Confidence 45566788999999999887765
No 410
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=20.32 E-value=98 Score=17.43 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=15.3
Q ss_pred CcHHHHHHHHHHHHHhcCc
Q 044011 69 RGSGALVNALVRGIEKFGG 87 (99)
Q Consensus 69 GG~~~l~~aL~~~i~~~Gg 87 (99)
-|..++.++|.+.+...++
T Consensus 15 ~Ga~~~~~~l~~~l~~~~~ 33 (80)
T cd03064 15 RGAEALLEALEKKLGIKPG 33 (80)
T ss_pred CCHHHHHHHHHHHhCCCCC
Confidence 4788999999999886644
No 411
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=20.14 E-value=1.1e+02 Score=21.63 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=23.1
Q ss_pred eeeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 64 LEYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 64 ~~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
...+.||++.|-.++++.+.+.|.+|..
T Consensus 8 ~vlVTGas~gIG~~~a~~L~~~G~~V~~ 35 (322)
T PRK07453 8 TVIITGASSGVGLYAAKALAKRGWHVIM 35 (322)
T ss_pred EEEEEcCCChHHHHHHHHHHHCCCEEEE
Confidence 4677789999999999999888887764
No 412
>PRK07806 short chain dehydrogenase; Provisional
Probab=20.13 E-value=1.2e+02 Score=20.35 Aligned_cols=26 Identities=8% Similarity=0.026 Sum_probs=18.7
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEE
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLS 90 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~ 90 (99)
..+.||++.|..++++.+.+.|-+|.
T Consensus 9 vlItGasggiG~~l~~~l~~~G~~V~ 34 (248)
T PRK07806 9 ALVTGSSRGIGADTAKILAGAGAHVV 34 (248)
T ss_pred EEEECCCCcHHHHHHHHHHHCCCEEE
Confidence 55667777777777777777776664
No 413
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.02 E-value=1.7e+02 Score=18.89 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=24.5
Q ss_pred eeeeCCc---HHHHHHHHHHHHHhcCcEEEcCcc
Q 044011 64 LEYPLRG---SGALVNALVRGIEKFGGRLSLRSR 94 (99)
Q Consensus 64 ~~~p~GG---~~~l~~aL~~~i~~~Gg~v~~~~~ 94 (99)
.++|++| ...=+++|.+++.+.+|-|.--|+
T Consensus 62 ~~iPV~~~~iT~~dV~~f~~Al~eaegPVlayCr 95 (130)
T COG3453 62 THIPVTGGGITEADVEAFQRALDEAEGPVLAYCR 95 (130)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHHhCCCEEeeec
Confidence 3778877 457788999999999999876554
No 414
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.02 E-value=1.4e+02 Score=19.57 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=22.4
Q ss_pred eeeCCcHHHHHHHHHHHHHhcCcEEEc
Q 044011 65 EYPLRGSGALVNALVRGIEKFGGRLSL 91 (99)
Q Consensus 65 ~~p~GG~~~l~~aL~~~i~~~Gg~v~~ 91 (99)
....||++.+..+|++.+.+.|-++..
T Consensus 9 vlItGasg~iG~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 9 ALVTGAARGLGRAIALRLARAGADVVV 35 (249)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEE
Confidence 567899999999999999988887543
Done!