BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044012
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 174 bits (442), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 149/499 (29%), Positives = 246/499 (49%), Gaps = 55/499 (11%)
Query: 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDS 58
M N+ ++F+P GH+ ++ A+L + + +T+ F ++ + S
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK-S 61
Query: 59 RLGREISLRILRFPSQEAGLPEGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPN 118
L + ++++ P E P E L S PE F LE L P ++ + N
Sbjct: 62 VLASQPQIQLIDLPEVE---PPPQELLKS---PEFYILTF--LESLIPHVKATIKTILSN 113
Query: 119 CIVSDNLFPWTVS---IAEELGIPRLAFTGS--GFFNNCVS-HSLEHHQPFKNIVSETQK 172
+V L + VS + E GIP F S GF + +S + + + F + + Q
Sbjct: 114 KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQL 173
Query: 173 FIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEP----A 228
+PG+ +QV + LPD K G+ A + +L R + G+++N+F +LE A
Sbjct: 174 LNIPGISNQV--PSNVLPDACFNKDGGYIAYY-KLAERFRDTKGIIVNTFSDLEQSSIDA 230
Query: 229 YADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHS-CLSWLNSRKPNSVLYIC 287
DH ++ + +GP+ +D K + K ++H L WL+ + SV+++C
Sbjct: 231 LYDHDEKIP--PIYAVGPL------LDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLC 282
Query: 288 FGSL-TRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDR 346
FGS+ F Q EIA LK SG F+W + E+ P+GF + + +
Sbjct: 283 FGSMGVSFGPSQIREIALGLKHSGVRFLW---------SNSAEKKVFPEGFLEWMELEGK 333
Query: 347 GFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAE-QFNNEKLVTQ 405
G I GWAPQV +L H+AIGGF++HCGWNSILE + GVP++TWP++AE Q N +LV +
Sbjct: 334 GMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE 392
Query: 406 VLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKK 465
+G+ +G ++ + S V+ I+ + +MD D + KK +KE+++
Sbjct: 393 ---WGVGLG---LRVDYRKGSDVVAAEEIEKGLKDLMDKDS----IVHKKVQEMKEMSRN 442
Query: 466 AVEEGGSSCNDLKALIEDI 484
AV +GGSS + LI+DI
Sbjct: 443 AVVDGGSSLISVGKLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 174 bits (441), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 149/499 (29%), Positives = 246/499 (49%), Gaps = 55/499 (11%)
Query: 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDS 58
M N+ ++F+P GH+ ++ A+L + + +T+ F ++ + S
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK-S 61
Query: 59 RLGREISLRILRFPSQEAGLPEGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPN 118
L + ++++ P E P E L S PE F LE L P ++ + N
Sbjct: 62 VLASQPQIQLIDLPEVE---PPPQELLKS---PEFYILTF--LESLIPHVKATIKTILSN 113
Query: 119 CIVSDNLFPWTVS---IAEELGIPRLAFTGS--GFFNNCVS-HSLEHHQPFKNIVSETQK 172
+V L + VS + E GIP F S GF + +S + + + F + + Q
Sbjct: 114 KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQL 173
Query: 173 FIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEP----A 228
+PG+ +QV + LPD K G+ A + +L R + G+++N+F +LE A
Sbjct: 174 LNIPGISNQV--PSNVLPDACFNKDGGYIAYY-KLAERFRDTKGIIVNTFSDLEQSSIDA 230
Query: 229 YADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHS-CLSWLNSRKPNSVLYIC 287
DH ++ + +GP+ +D K + K ++H L WL+ + SV+++C
Sbjct: 231 LYDHDEKIP--PIYAVGPL------LDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLC 282
Query: 288 FGSL-TRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDR 346
FGS+ F Q EIA LK SG F+W + E+ P+GF + + +
Sbjct: 283 FGSMGVSFGPSQIREIALGLKHSGVRFLW---------SNSAEKKVFPEGFLEWMELEGK 333
Query: 347 GFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAE-QFNNEKLVTQ 405
G I GWAPQV +L H+AIGGF++HCGWNSILE + GVP++TWP++AE Q N +LV +
Sbjct: 334 GMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE 392
Query: 406 VLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKK 465
+G+ +G ++ + S V+ I+ + +MD D + KK +KE+++
Sbjct: 393 ---WGVGLG---LRVDYRKGSDVVAAEEIEKGLKDLMDKDS----IVHKKVQEMKEMSRN 442
Query: 466 AVEEGGSSCNDLKALIEDI 484
AV +GGSS + LI+DI
Sbjct: 443 AVVDGGSSLISVGKLIDDI 461
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 146/514 (28%), Positives = 228/514 (44%), Gaps = 66/514 (12%)
Query: 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREI 64
N+K HV+ +PY GH+ P+ +A+L G +T + T N +R + + G
Sbjct: 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDG--- 62
Query: 65 SLRILRFPSQEAGL-PEGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPN----- 118
F S GL P + +S P + + L+P E L R +
Sbjct: 63 -FTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSV--RKNFLKPYCELLTRLNHSTNVPPV 119
Query: 119 -CIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQ--------PFK----- 164
C+VSD +T+ AEE +P + + S + C ++ H + PFK
Sbjct: 120 TCLVSDCCMSFTIQAAEEFELPNVLYFSS---SACSLLNVMHFRSFVERGIIPFKDESYL 176
Query: 165 -NIVSETQKFIVPGLP-----DQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVL 218
N ET+ +PGL D V R+ P+ + + F E+ + K +L
Sbjct: 177 TNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLE------FFIEVADRVNKDTTIL 230
Query: 219 MNSFYELEPAYADHFRRVTGKKAWHLGPV-SLYNRDVDDKAERGDKSCVSKHS--CLSWL 275
+N+F ELE + T + +GP+ SL + S + K CL WL
Sbjct: 231 LNTFNELESDVINALSS-TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWL 289
Query: 276 NSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPD 335
S++P SV+Y+ FGS T + EQ E A L SF+W I++ D
Sbjct: 290 ESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLW----IIRPDLVIGGSVIFSS 345
Query: 336 GFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAE 395
F +E+ DRG +I W PQ +L H +IGGFLTHCGWNS E + AGVPM+ WP FA+
Sbjct: 346 EFTNEIA--DRG-LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFAD 402
Query: 396 QFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKK 455
Q + + + + G+ + + R + I V+ D + KM++K
Sbjct: 403 QPTDCRFICNEWEIGMEIDTN------------VKREELAKLINEVIAGD--KGKKMKQK 448
Query: 456 ANHLKELAKKAVEEGGSSCNDLKALIEDIRLYKH 489
A LK+ A++ GG S +L +I+D+ L ++
Sbjct: 449 AMELKKKAEENTRPGGCSYMNLNKVIKDVLLKQN 482
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 222/493 (45%), Gaps = 50/493 (10%)
Query: 2 VSENQKLHVMFLPYIAPGHMVPMVDMA-RLFAANGIQVTIILTTMNARRFQNAIDRDSRL 60
+ E++ HV +P GH++P+V+ A RL +G+ VT ++ DS L
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDS-L 59
Query: 61 GREISLRILRFPSQEAGLPEGCENLMSTSTPETTKKLFPALELLRPEIEKLFRE-----Q 115
IS L P +L S++ E+ L + PE+ K+F +
Sbjct: 60 PSSISSVFLP--------PVDLTDLSSSTRIESRISL--TVTRSNPELRKVFDSFVEGGR 109
Query: 116 NPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKNIVSETQKFIV 175
P +V D +A E +P F + N +S L + + + E ++
Sbjct: 110 LPTALVVDLFGTDAFDVAVEFHVPPYIFYPTT--ANVLSFFLHLPKLDETVSCEFRELTE 167
Query: 176 P-GLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFR 234
P LP V ++ D + + +++ G+L+N+F+ELEP +
Sbjct: 168 PLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQ 227
Query: 235 RVTGKK--AWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLT 292
K + +GP+ + + E + CL WL+++ SVLY+ FGS
Sbjct: 228 EPGLDKPPVYPVGPLVNIGKQEAKQTEESE--------CLKWLDNQPLGSVLYVSFGSGG 279
Query: 293 RFSKEQTSEIAAALKESGHSFIWVV--------GKILKTDDDQEEESWLPDGFEDEVRRN 344
+ EQ +E+A L +S F+WV+ + + ++LP GF + R
Sbjct: 280 TLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLE--RTK 337
Query: 345 DRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVT 404
RGF+I WAPQ +L H + GGFLTHCGWNS LE V +G+P++ WP++AEQ N L++
Sbjct: 338 KRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLS 397
Query: 405 QVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464
+ ++ L + A D ++ R + + +M+ ++ + V R K LKE A
Sbjct: 398 EDIRAAL-------RPRAGDDG-LVRREEVARVVKGLMEGEEGKGV--RNKMKELKEAAC 447
Query: 465 KAVEEGGSSCNDL 477
+ +++ G+S L
Sbjct: 448 RVLKDDGTSTKAL 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 139/491 (28%), Positives = 224/491 (45%), Gaps = 60/491 (12%)
Query: 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREI 64
N LHV L + H P++ + + A +VT F D+ R
Sbjct: 11 NNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVT-------FSFFCTTTTNDTLFSRSN 63
Query: 65 S-LRILRFPSQEAGLPEGCENLMSTSTPETTKKLF--PALELLRPEIEKLFRE--QNPNC 119
L +++ + GLP+G +S+ P LF E + I++ E +N C
Sbjct: 64 EFLPNIKYYNVHDGLPKG---YVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITC 120
Query: 120 IVSDNLFPWTVSIAEELG---IPRLAFTGSGFFNNCVSHSLEHHQPFKNIVSETQKFIVP 176
+V+D F + +AEE+ +P + + + K + ++P
Sbjct: 121 LVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLP 180
Query: 177 GLPDQVKLSRSQLPD-IVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRR 235
G P+ L S LP+ ++K F+ M ++ ++ V +NSF + P +
Sbjct: 181 GFPE---LKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNS 237
Query: 236 VTGKKAWHLGPVSLYN--RDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTR 293
K ++GP +L R V D+ H CL WL+ + +SV+YI FGS+
Sbjct: 238 -KFKLLLNVGPFNLTTPQRKVSDE-----------HGCLEWLDQHENSSVVYISFGSVVT 285
Query: 294 FSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGW 353
+ + +A +L+E G FIW D +E+ LP GF + R +G I+ W
Sbjct: 286 PPPHELTALAESLEECGFPFIWSF-----RGDPKEK---LPKGFLE--RTKTKGKIV-AW 334
Query: 354 APQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPV 413
APQV IL+H ++G FLTH GWNS+LE + GVPM++ P F +Q N L VL+ G+ V
Sbjct: 335 APQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV 394
Query: 414 GNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSS 473
D+ V+ + +IK A+ + M + ++ MR+K LKE A KAVE+ G+S
Sbjct: 395 -----------DNGVLTKESIKKALELTMSS--EKGGIMRQKIVKLKESAFKAVEQNGTS 441
Query: 474 CNDLKALIEDI 484
D LI+ +
Sbjct: 442 AMDFTTLIQIV 452
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/417 (26%), Positives = 186/417 (44%), Gaps = 58/417 (13%)
Query: 76 AGLPEGCENLMSTSTPETTKK--LFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIA 133
AG P+ L + + PE+ ++ + E RP +C+V+D + +A
Sbjct: 80 AGRPQEDIELFTRAAPESFRQGMVMAVAETGRPV----------SCLVADAFIWFAADMA 129
Query: 134 EELGIPRLAFTGSGFFNNCVSHSLEHHQPFKNIVSETQKF------IVPGLPDQVKLSRS 187
E+G+ L F +G N+ +H K VS Q +PG+ +V+
Sbjct: 130 AEMGVAWLPFWTAGP-NSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGM-SKVRFRDL 187
Query: 188 QLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWHLGPV 247
Q + ++ FS M + K+ V +NSF EL+ + + + K ++GP
Sbjct: 188 QEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKL-KTYLNIGPF 246
Query: 248 SLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALK 307
+L G CL WL RKP SV+YI FG++T + ++ AL+
Sbjct: 247 NLITPPPVVPNTTG---------CLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALE 297
Query: 308 ESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGG 367
S FIW + + LP+GF ++ R G ++ WAPQ +L H+A+G
Sbjct: 298 ASRVPFIWSLRDKARVH--------LPEGFLEKTR--GYGMVVP-WAPQAEVLAHEAVGA 346
Query: 368 FLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSP 427
F+THCGWNS+ E V+ GVP++ P F +Q N ++V VL+ G+ + ++
Sbjct: 347 FVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFT-------- 398
Query: 428 VINRGNIKNAICVVMDN--DDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIE 482
K+ + D ++ K+R+ L+E A +AV GSS + L++
Sbjct: 399 -------KSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVD 448
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 274 WLNSRKPNSVLYICFGS-LTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESW 332
++ S N V+ GS ++ ++E+ + IA+AL + +W + D ++
Sbjct: 14 FVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLW------RFDGNK----- 62
Query: 333 LPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPV 392
PD R + W PQ +L H F+TH G N I E + G+P V P+
Sbjct: 63 -PDTLGLNTR-------LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPL 114
Query: 393 FAEQFNN 399
FA+Q +N
Sbjct: 115 FADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 350 IKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQ-FNNEKLVTQVLK 408
+ W PQ+ IL + F+TH G S +E +S VPMV P AEQ N E++V L
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLG 366
Query: 409 FGLP 412
+P
Sbjct: 367 RHIP 370
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 22/123 (17%)
Query: 350 IKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKF 409
+ W PQ+ IL + F+TH G EG++ PM+ P +QF N ++
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ----- 339
Query: 410 GLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEE 469
GL V ++ AT D + R + A+ +V DD E A L+ + + +E
Sbjct: 340 GLGVARKLATEEATAD---LLR---ETALALV---DDPEV------ARRLRRIQAEMAQE 384
Query: 470 GGS 472
GG+
Sbjct: 385 GGT 387
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 27/216 (12%)
Query: 186 RSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWHLG 245
++ +P I C G D + E + G+ +L P D F G +
Sbjct: 149 KAGIPTI--CHGVGRDTPDDLTRSIEEEVRGLAQRLGLDLPPGRIDGF----GNPFIDIF 202
Query: 246 PVSLYNRDVDDKAERGDKSCVS---KHSCLSWLNSR-KPNSVLYICFGSLTRFSKEQTSE 301
P SL + + R + V + +WL+SR ++Y+ G+ S T E
Sbjct: 203 PPSLQEPEFRARPRRHELRPVPFAEQGDLPAWLSSRDTARPLVYLTLGT----SSGGTVE 258
Query: 302 IAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILE 361
+ L+ + + +L + S L EV N R ++ W PQ +L
Sbjct: 259 V---LRAAIDGLAGLDADVLVASGPSLDVSGL-----GEVPANVR---LESWVPQAALLP 307
Query: 362 HQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQF 397
H + + H G + L + AGVP +++P + F
Sbjct: 308 HVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3G7N|A Chain A, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
pdb|3G7N|B Chain B, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
Length = 258
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 393 FAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGN 433
A+ F ++ LV+ L P+GN+ W + T + NRGN
Sbjct: 145 LAQNFPDKSLVSNALN-AFPIGNQAWADFGTAQAGTFNRGN 184
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 141/399 (35%), Gaps = 80/399 (20%)
Query: 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREIS 65
++ H++F GH+ P + + A G ++T + T + A + A G E+
Sbjct: 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAA-------GAEVV 55
Query: 66 LRILRFPSQEAGLPEGCENLMSTSTPETTKKLFPALE---LLRPEIEKLFREQNPNCIVS 122
L F + +PE ++ ET L E +LR E L NP +V
Sbjct: 56 LYKSEFDTFH--VPE----VVKQEDAETQLHLVYVRENVAILRAAEEAL--GDNPPDLVV 107
Query: 123 DNLFPWTVS--IAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKNI-VSETQKFIVPGLP 179
++FP+ +A P + TG GF N EH+ FK + S Q+ P
Sbjct: 108 YDVFPFIAGRLLAARWDRPAVRLTG-GFAAN------EHYSLFKELWKSNGQRH-----P 155
Query: 180 DQVKLSRSQLPDIVKCKS--TGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVT 237
V+ S L D++ T +DE+ E + L SF + + F V
Sbjct: 156 ADVEAVHSVLVDLLGKYGVDTPVKEYWDEI---EGLTIVFLPKSFQPFAETFDERFAFV- 211
Query: 238 GKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKE 297
GP +L RD W R VL + G+ E
Sbjct: 212 -------GP-TLTGRD----------------GQPGWQPPRPDAPVLLVSLGNQFNEHPE 247
Query: 298 QTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQV 357
A A ++ + +G L D LP E W P
Sbjct: 248 FFRACAQAFADTPWHVVXAIGGFL----DPAVLGPLPPNVE-----------AHQWIPFH 292
Query: 358 LILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQ 396
+L H LTH ++LE +AGVP+V P FA +
Sbjct: 293 SVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|2OZ8|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Mesorhizobium Loti
pdb|2OZ8|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Mesorhizobium Loti
Length = 389
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 295 SKEQTSEIAAALKESGHSFIWVVGKILKTDDD 326
SKE +++ A ++E+GH +WV IL+ D D
Sbjct: 203 SKEALTKLVA-IREAGHDLLWVEDPILRHDHD 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,016,016
Number of Sequences: 62578
Number of extensions: 627625
Number of successful extensions: 1657
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1623
Number of HSP's gapped (non-prelim): 20
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)