Query 044012
Match_columns 490
No_of_seqs 124 out of 1271
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:36:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 2.9E-66 6.2E-71 518.3 46.8 477 5-488 6-488 (491)
2 PLN03007 UDP-glucosyltransfera 100.0 8.4E-65 1.8E-69 513.7 46.4 471 5-487 3-481 (482)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 8.1E-64 1.7E-68 501.9 46.1 458 5-489 7-474 (477)
4 PLN02992 coniferyl-alcohol glu 100.0 4.9E-63 1.1E-67 493.0 42.8 442 6-487 4-470 (481)
5 PLN02208 glycosyltransferase f 100.0 4.7E-63 1E-67 491.8 42.5 437 6-487 3-440 (442)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 8.7E-63 1.9E-67 491.1 42.9 437 1-486 1-450 (451)
7 PLN02555 limonoid glucosyltran 100.0 4E-62 8.6E-67 487.9 44.5 455 1-488 1-471 (480)
8 PLN02764 glycosyltransferase f 100.0 1.6E-61 3.5E-66 477.8 44.1 439 6-489 4-448 (453)
9 PLN02207 UDP-glycosyltransfera 100.0 1.7E-61 3.8E-66 481.1 43.8 450 6-488 2-467 (468)
10 PLN02210 UDP-glucosyl transfer 100.0 1.3E-61 2.9E-66 484.5 43.2 443 1-485 1-454 (456)
11 PLN02670 transferase, transfer 100.0 1.3E-61 2.8E-66 482.5 42.7 453 7-487 6-466 (472)
12 PLN00164 glucosyltransferase; 100.0 3E-61 6.6E-66 485.0 43.9 450 6-488 2-475 (480)
13 PLN03015 UDP-glucosyl transfer 100.0 2.8E-61 6.1E-66 477.5 42.8 445 6-485 2-467 (470)
14 PLN02173 UDP-glucosyl transfer 100.0 2.3E-61 4.9E-66 478.6 41.8 430 4-485 2-447 (449)
15 PLN00414 glycosyltransferase f 100.0 8.1E-61 1.8E-65 476.3 43.0 438 6-489 3-443 (446)
16 PLN02562 UDP-glycosyltransfera 100.0 1.8E-60 3.9E-65 476.0 43.4 429 1-485 1-448 (448)
17 PLN02448 UDP-glycosyltransfera 100.0 6.1E-60 1.3E-64 475.9 43.7 441 4-487 7-458 (459)
18 PLN03004 UDP-glycosyltransfera 100.0 6E-60 1.3E-64 468.7 39.8 435 7-475 3-450 (451)
19 PLN02152 indole-3-acetate beta 100.0 2.2E-59 4.8E-64 465.1 42.1 437 6-484 2-454 (455)
20 PLN02554 UDP-glycosyltransfera 100.0 4.3E-59 9.3E-64 471.3 42.4 451 7-487 2-479 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 1E-58 2.2E-63 467.9 42.9 457 5-488 1-474 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.2E-51 4.8E-56 416.3 24.7 408 6-487 19-467 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.9E-51 6.2E-56 422.9 5.1 383 9-465 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 3.3E-44 7.1E-49 358.9 31.4 377 13-484 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 9.6E-44 2.1E-48 357.2 22.5 385 8-483 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 1.6E-43 3.5E-48 349.5 22.5 390 7-487 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.2E-39 2.6E-44 336.5 17.4 410 7-473 5-443 (496)
28 PRK12446 undecaprenyldiphospho 100.0 2.5E-27 5.4E-32 231.4 24.3 324 7-458 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.3E-25 2.9E-30 218.4 24.3 306 8-441 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 4.2E-23 9.1E-28 199.1 23.8 325 8-459 1-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 6.7E-23 1.5E-27 199.0 21.9 303 9-445 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.9 4.4E-19 9.4E-24 175.5 31.3 325 7-462 1-337 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.1E-17 2.4E-22 165.1 29.8 315 9-443 1-323 (350)
34 COG4671 Predicted glycosyl tra 99.8 6.6E-17 1.4E-21 148.5 21.5 342 5-443 7-364 (400)
35 TIGR00215 lpxB lipid-A-disacch 99.8 1.4E-16 3E-21 158.0 23.0 351 8-481 6-383 (385)
36 TIGR01133 murG undecaprenyldip 99.7 1.5E-15 3.1E-20 149.8 28.5 309 8-443 1-320 (348)
37 PRK13609 diacylglycerol glucos 99.7 3E-15 6.5E-20 149.3 27.3 134 280-443 201-337 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 7.8E-16 1.7E-20 145.7 20.0 105 282-402 171-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.7 1.3E-14 2.9E-19 144.7 24.4 353 7-484 1-375 (380)
40 PRK13608 diacylglycerol glucos 99.6 1.6E-14 3.5E-19 144.1 20.8 148 279-458 200-351 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 5.5E-16 1.2E-20 135.7 1.0 135 283-443 1-143 (167)
42 TIGR03492 conserved hypothetic 99.5 5E-12 1.1E-16 125.7 26.0 329 16-443 5-363 (396)
43 PLN02605 monogalactosyldiacylg 99.5 1E-11 2.2E-16 123.8 26.2 138 274-444 199-347 (382)
44 PLN02871 UDP-sulfoquinovose:DA 99.5 1E-10 2.2E-15 119.8 29.9 141 283-460 264-415 (465)
45 cd03814 GT1_like_2 This family 99.4 9.9E-10 2.2E-14 108.3 29.6 80 345-444 246-332 (364)
46 PF03033 Glyco_transf_28: Glyc 99.4 3.2E-13 6.9E-18 114.4 3.7 123 10-150 1-134 (139)
47 cd03816 GT1_ALG1_like This fam 99.3 8.5E-09 1.8E-13 104.0 31.3 94 346-461 294-400 (415)
48 cd04962 GT1_like_5 This family 99.3 1.6E-08 3.5E-13 100.4 32.1 94 345-459 252-350 (371)
49 cd03817 GT1_UGDG_like This fam 99.3 1.8E-08 3.8E-13 99.5 31.9 97 345-463 258-361 (374)
50 COG3980 spsG Spore coat polysa 99.3 7.9E-10 1.7E-14 99.3 19.3 132 283-443 160-292 (318)
51 cd03794 GT1_wbuB_like This fam 99.3 1.2E-08 2.5E-13 101.3 30.2 96 345-461 274-381 (394)
52 cd03823 GT1_ExpE7_like This fa 99.3 1.4E-08 3.1E-13 99.7 30.3 128 281-443 190-328 (359)
53 cd03818 GT1_ExpC_like This fam 99.2 5.1E-08 1.1E-12 97.9 32.0 95 345-460 280-381 (396)
54 cd03801 GT1_YqgM_like This fam 99.2 2.7E-08 5.9E-13 97.6 29.5 318 9-444 1-341 (374)
55 cd03800 GT1_Sucrose_synthase T 99.2 2.3E-08 5E-13 100.2 29.4 93 345-458 282-381 (398)
56 cd03808 GT1_cap1E_like This fa 99.2 5.7E-08 1.2E-12 95.2 31.5 324 9-458 1-342 (359)
57 cd03795 GT1_like_4 This family 99.1 1.2E-07 2.6E-12 93.4 29.6 147 283-462 192-349 (357)
58 PRK10307 putative glycosyl tra 99.1 1E-06 2.2E-11 88.9 36.4 146 283-460 230-388 (412)
59 cd03820 GT1_amsD_like This fam 99.1 6.9E-08 1.5E-12 94.1 26.9 96 345-461 234-335 (348)
60 cd03825 GT1_wcfI_like This fam 99.1 3.1E-07 6.6E-12 90.8 30.3 79 345-443 243-329 (365)
61 PRK14089 ipid-A-disaccharide s 99.1 1.5E-08 3.3E-13 97.9 20.0 155 282-464 168-333 (347)
62 TIGR00236 wecB UDP-N-acetylglu 99.1 4E-08 8.7E-13 97.5 23.1 319 8-443 1-333 (365)
63 cd03819 GT1_WavL_like This fam 99.0 9.2E-07 2E-11 87.1 32.0 100 345-462 245-348 (355)
64 cd03805 GT1_ALG2_like This fam 99.0 4.1E-07 8.9E-12 91.1 29.7 93 345-459 279-378 (392)
65 cd03798 GT1_wlbH_like This fam 99.0 1.3E-06 2.7E-11 86.0 32.1 80 345-444 258-344 (377)
66 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 3.4E-08 7.4E-13 97.9 19.8 132 280-443 197-336 (363)
67 TIGR03449 mycothiol_MshA UDP-N 99.0 1.4E-06 3E-11 87.8 31.1 94 345-459 282-382 (405)
68 PF04007 DUF354: Protein of un 99.0 4.3E-07 9.4E-12 87.2 25.7 110 8-146 1-112 (335)
69 cd05844 GT1_like_7 Glycosyltra 99.0 3.5E-07 7.6E-12 90.6 26.0 79 345-443 244-335 (367)
70 cd03799 GT1_amsK_like This is 99.0 2.4E-06 5.1E-11 84.1 30.8 80 345-444 235-327 (355)
71 cd03811 GT1_WabH_like This fam 98.9 4.4E-07 9.6E-12 88.5 25.3 131 281-443 188-331 (353)
72 PRK05749 3-deoxy-D-manno-octul 98.9 6.6E-07 1.4E-11 90.7 27.0 95 347-460 303-403 (425)
73 PRK09922 UDP-D-galactose:(gluc 98.9 1.9E-06 4.1E-11 85.3 27.6 164 283-485 181-357 (359)
74 cd03822 GT1_ecORF704_like This 98.8 8.7E-06 1.9E-10 80.2 30.6 93 345-459 246-348 (366)
75 cd03796 GT1_PIG-A_like This fa 98.8 3.4E-06 7.3E-11 84.8 27.8 77 345-443 249-332 (398)
76 cd03807 GT1_WbnK_like This fam 98.8 7.2E-06 1.6E-10 80.4 29.7 78 345-444 250-332 (365)
77 cd03821 GT1_Bme6_like This fam 98.8 1.6E-05 3.5E-10 78.2 31.1 92 345-459 261-359 (375)
78 TIGR02472 sucr_P_syn_N sucrose 98.8 1.7E-05 3.6E-10 80.7 31.6 79 345-443 316-405 (439)
79 cd04955 GT1_like_6 This family 98.8 1.4E-05 3E-10 79.0 29.8 124 285-443 196-329 (363)
80 cd03802 GT1_AviGT4_like This f 98.8 3.1E-06 6.8E-11 82.6 24.3 129 284-443 173-307 (335)
81 cd03812 GT1_CapH_like This fam 98.8 8.1E-06 1.8E-10 80.5 26.9 80 345-445 248-332 (358)
82 cd04951 GT1_WbdM_like This fam 98.7 1.9E-05 4E-10 77.9 28.1 128 282-445 188-327 (360)
83 TIGR02468 sucrsPsyn_pln sucros 98.7 4.2E-05 9.1E-10 83.0 32.2 163 270-460 469-652 (1050)
84 TIGR02149 glgA_Coryne glycogen 98.7 5.2E-05 1.1E-09 75.8 31.4 150 284-458 203-365 (388)
85 PLN02275 transferase, transfer 98.7 6.1E-05 1.3E-09 74.9 31.3 75 346-442 286-371 (371)
86 TIGR03087 stp1 sugar transfera 98.7 1.3E-05 2.8E-10 80.5 26.2 91 345-458 279-375 (397)
87 TIGR03088 stp2 sugar transfera 98.7 6.6E-05 1.4E-09 74.7 31.0 78 346-443 255-337 (374)
88 COG1519 KdtA 3-deoxy-D-manno-o 98.7 3.8E-05 8.2E-10 74.2 26.8 327 16-464 57-405 (419)
89 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 1E-05 2.2E-10 79.8 22.7 321 8-443 1-338 (365)
90 PRK15427 colanic acid biosynth 98.6 8E-05 1.7E-09 74.9 29.3 94 345-458 278-384 (406)
91 PLN02949 transferase, transfer 98.6 0.00023 5E-09 72.4 32.2 99 345-463 334-441 (463)
92 PF02350 Epimerase_2: UDP-N-ac 98.6 7.3E-07 1.6E-11 87.1 12.4 252 99-443 50-317 (346)
93 PLN02846 digalactosyldiacylgly 98.5 8.9E-05 1.9E-09 74.6 26.5 71 350-443 288-362 (462)
94 PRK01021 lpxB lipid-A-disaccha 98.5 4.8E-05 1E-09 77.7 24.4 206 222-464 368-590 (608)
95 cd03804 GT1_wbaZ_like This fam 98.5 2.8E-05 6.1E-10 76.6 22.3 125 285-444 198-326 (351)
96 cd03809 GT1_mtfB_like This fam 98.5 5E-05 1.1E-09 74.8 24.1 77 345-443 252-335 (365)
97 TIGR02470 sucr_synth sucrose s 98.5 0.0011 2.3E-08 70.8 34.5 78 345-442 618-707 (784)
98 cd03806 GT1_ALG11_like This fa 98.4 0.00026 5.6E-09 71.5 27.3 97 345-462 304-410 (419)
99 COG0763 LpxB Lipid A disacchar 98.4 8.8E-05 1.9E-09 71.0 21.0 225 222-484 143-379 (381)
100 TIGR02095 glgA glycogen/starch 98.4 0.00075 1.6E-08 69.5 29.9 129 283-443 292-436 (473)
101 PRK15179 Vi polysaccharide bio 98.4 0.00074 1.6E-08 71.7 30.0 96 345-459 573-673 (694)
102 cd03792 GT1_Trehalose_phosphor 98.4 0.00057 1.2E-08 68.0 27.8 91 345-458 251-350 (372)
103 PRK00654 glgA glycogen synthas 98.3 0.001 2.3E-08 68.2 29.0 133 283-443 283-427 (466)
104 PF02684 LpxB: Lipid-A-disacch 98.3 0.00017 3.8E-09 70.4 21.2 213 222-475 140-366 (373)
105 PRK14098 glycogen synthase; Pr 98.3 0.0026 5.6E-08 65.5 30.2 129 284-442 309-449 (489)
106 PLN00142 sucrose synthase 98.2 0.0017 3.7E-08 69.3 29.2 91 346-457 642-748 (815)
107 cd03791 GT1_Glycogen_synthase_ 98.2 0.0027 5.9E-08 65.4 29.6 83 345-443 350-441 (476)
108 COG0381 WecB UDP-N-acetylgluco 98.2 0.00052 1.1E-08 65.9 22.0 334 5-457 1-349 (383)
109 KOG3349 Predicted glycosyltran 98.1 8.4E-06 1.8E-10 66.4 7.2 113 283-409 5-128 (170)
110 PLN02316 synthase/transferase 98.1 0.019 4.1E-07 63.1 33.2 106 345-472 899-1019(1036)
111 cd04949 GT1_gtfA_like This fam 98.0 0.0023 5E-08 63.5 23.7 102 345-464 260-364 (372)
112 cd04950 GT1_like_1 Glycosyltra 98.0 0.012 2.7E-07 58.4 28.7 77 345-443 253-339 (373)
113 PF00534 Glycos_transf_1: Glyc 97.8 0.00031 6.8E-09 61.3 11.3 146 280-457 13-170 (172)
114 PRK14099 glycogen synthase; Pr 97.8 0.058 1.3E-06 55.5 29.3 41 5-45 1-47 (485)
115 TIGR02918 accessory Sec system 97.8 0.013 2.8E-07 60.4 24.5 151 283-464 320-485 (500)
116 cd03813 GT1_like_3 This family 97.7 0.017 3.8E-07 59.4 24.1 93 345-458 353-455 (475)
117 PLN02501 digalactosyldiacylgly 97.7 0.033 7.2E-07 58.2 25.2 115 295-444 557-681 (794)
118 PF13844 Glyco_transf_41: Glyc 97.7 0.0017 3.8E-08 64.9 15.7 140 279-443 282-429 (468)
119 PRK15484 lipopolysaccharide 1, 97.6 0.0019 4E-08 64.5 15.9 80 345-443 256-343 (380)
120 TIGR02193 heptsyl_trn_I lipopo 97.6 0.0055 1.2E-07 59.5 17.8 45 9-53 1-47 (319)
121 cd04946 GT1_AmsK_like This fam 97.6 0.0017 3.6E-08 65.4 14.3 96 345-458 288-390 (407)
122 COG5017 Uncharacterized conser 97.5 0.00085 1.8E-08 53.9 9.3 107 284-413 2-121 (161)
123 cd01635 Glycosyltransferase_GT 97.5 0.021 4.5E-07 51.7 20.4 49 345-395 160-216 (229)
124 COG1817 Uncharacterized protei 97.5 0.053 1.1E-06 50.5 21.0 104 16-146 8-113 (346)
125 PRK10125 putative glycosyl tra 97.4 0.19 4.1E-06 50.5 29.7 102 297-439 256-366 (405)
126 PF13477 Glyco_trans_4_2: Glyc 97.4 0.0025 5.4E-08 53.4 11.0 103 9-145 1-107 (139)
127 PRK10422 lipopolysaccharide co 97.3 0.048 1E-06 53.7 20.6 109 5-143 3-114 (352)
128 PF13692 Glyco_trans_1_4: Glyc 97.2 0.0017 3.7E-08 54.0 7.9 79 345-443 52-134 (135)
129 PRK09814 beta-1,6-galactofuran 97.1 0.0046 1E-07 60.4 10.7 110 345-482 206-331 (333)
130 PLN02939 transferase, transfer 96.9 0.91 2E-05 49.7 31.2 84 345-443 836-930 (977)
131 TIGR02201 heptsyl_trn_III lipo 96.9 0.11 2.3E-06 51.1 18.6 106 9-143 1-109 (344)
132 PF13579 Glyco_trans_4_4: Glyc 96.7 0.0034 7.3E-08 53.5 5.5 95 23-145 6-104 (160)
133 PHA01633 putative glycosyl tra 96.6 0.029 6.3E-07 54.3 11.7 103 345-464 200-325 (335)
134 PF06722 DUF1205: Protein of u 96.5 0.0055 1.2E-07 47.5 5.1 53 268-320 27-84 (97)
135 PRK10964 ADP-heptose:LPS hepto 96.4 0.64 1.4E-05 45.1 20.2 46 8-53 1-48 (322)
136 PRK10916 ADP-heptose:LPS hepto 96.3 0.65 1.4E-05 45.6 20.2 104 8-142 1-106 (348)
137 COG3914 Spy Predicted O-linked 96.2 0.11 2.3E-06 52.6 13.6 109 279-397 427-542 (620)
138 COG0859 RfaF ADP-heptose:LPS h 96.2 0.35 7.5E-06 47.2 17.0 105 7-142 1-107 (334)
139 PRK10017 colanic acid biosynth 96.2 0.22 4.8E-06 50.1 15.8 182 272-486 225-424 (426)
140 TIGR02195 heptsyl_trn_II lipop 96.1 0.72 1.6E-05 45.0 19.1 103 9-142 1-105 (334)
141 KOG4626 O-linked N-acetylgluco 96.1 0.13 2.8E-06 52.4 13.0 127 279-414 756-888 (966)
142 cd03789 GT1_LPS_heptosyltransf 96.0 1.4 3.1E-05 41.7 20.4 45 9-53 1-47 (279)
143 PF01975 SurE: Survival protei 95.9 0.044 9.4E-07 48.7 8.3 121 8-146 1-134 (196)
144 PF06258 Mito_fiss_Elm1: Mitoc 95.8 1.9 4E-05 41.5 20.8 57 355-414 221-281 (311)
145 PRK15490 Vi polysaccharide bio 95.8 0.36 7.9E-06 49.7 15.5 65 345-416 454-523 (578)
146 PF12000 Glyco_trans_4_3: Gkyc 95.2 0.24 5.2E-06 42.8 10.0 44 103-146 52-97 (171)
147 PF13439 Glyco_transf_4: Glyco 95.0 0.11 2.3E-06 44.9 7.7 101 17-148 11-112 (177)
148 PHA01630 putative group 1 glyc 94.6 0.7 1.5E-05 45.0 13.0 39 353-393 197-242 (331)
149 PF08660 Alg14: Oligosaccharid 94.0 0.59 1.3E-05 40.5 9.8 114 15-146 5-130 (170)
150 PF13524 Glyco_trans_1_2: Glyc 93.9 0.47 1E-05 36.2 8.3 83 371-481 9-91 (92)
151 TIGR02919 accessory Sec system 92.2 3.7 8.1E-05 41.6 13.8 138 280-462 282-425 (438)
152 COG0496 SurE Predicted acid ph 92.1 0.91 2E-05 41.6 8.5 113 8-146 1-126 (252)
153 TIGR00715 precor6x_red precorr 91.2 1.5 3.3E-05 40.7 9.2 91 8-143 1-98 (256)
154 COG1618 Predicted nucleotide k 90.8 1.8 3.9E-05 36.7 8.2 43 6-48 4-46 (179)
155 PRK13932 stationary phase surv 90.3 3.6 7.9E-05 38.1 10.7 117 6-145 4-133 (257)
156 TIGR03713 acc_sec_asp1 accesso 90.1 3.2 6.9E-05 43.1 11.3 93 346-464 409-507 (519)
157 PRK05647 purN phosphoribosylgl 90.1 3 6.5E-05 37.2 9.8 83 7-125 1-89 (200)
158 TIGR02400 trehalose_OtsA alpha 89.7 3.3 7.2E-05 42.3 11.0 105 350-485 340-455 (456)
159 PRK13933 stationary phase surv 89.3 4.3 9.3E-05 37.6 10.3 44 8-53 1-44 (253)
160 PRK02261 methylaspartate mutas 89.2 1.1 2.4E-05 37.3 5.9 48 5-52 1-48 (137)
161 PRK02797 4-alpha-L-fucosyltran 88.9 8.1 0.00018 36.7 11.8 82 346-443 206-293 (322)
162 PF00551 Formyl_trans_N: Formy 88.9 5.6 0.00012 34.9 10.6 106 8-146 1-110 (181)
163 PF02951 GSH-S_N: Prokaryotic 88.4 0.73 1.6E-05 37.2 4.1 39 8-46 1-42 (119)
164 PRK13935 stationary phase surv 87.7 6.1 0.00013 36.5 10.2 44 8-53 1-44 (253)
165 COG2894 MinD Septum formation 87.4 4 8.6E-05 36.6 8.3 42 7-48 1-44 (272)
166 PF02441 Flavoprotein: Flavopr 87.2 0.86 1.9E-05 37.5 4.0 45 8-53 1-45 (129)
167 PRK00346 surE 5'(3')-nucleotid 87.0 5.6 0.00012 36.8 9.5 111 8-145 1-124 (250)
168 PRK13934 stationary phase surv 86.8 11 0.00023 35.2 11.2 44 8-53 1-44 (266)
169 PF07429 Glyco_transf_56: 4-al 86.4 11 0.00024 36.3 11.3 83 345-443 244-332 (360)
170 PF09314 DUF1972: Domain of un 86.0 23 0.0005 31.1 12.5 58 7-71 1-63 (185)
171 cd02067 B12-binding B12 bindin 85.7 15 0.00033 29.4 10.7 42 9-50 1-42 (119)
172 PRK08305 spoVFB dipicolinate s 85.1 1.4 3.1E-05 39.0 4.5 46 5-50 3-48 (196)
173 COG1703 ArgK Putative periplas 84.5 3.8 8.3E-05 38.5 7.1 116 6-138 50-167 (323)
174 TIGR00087 surE 5'/3'-nucleotid 84.4 11 0.00023 34.9 10.1 115 8-145 1-128 (244)
175 COG0003 ArsA Predicted ATPase 84.1 12 0.00025 36.2 10.6 41 7-47 1-42 (322)
176 PRK06849 hypothetical protein; 84.1 5.7 0.00012 39.7 9.0 37 5-45 2-38 (389)
177 PF01075 Glyco_transf_9: Glyco 84.1 2.9 6.2E-05 38.6 6.5 99 280-390 104-208 (247)
178 PF02374 ArsA_ATPase: Anion-tr 83.5 3.4 7.4E-05 39.6 6.8 42 8-49 1-43 (305)
179 PRK08057 cobalt-precorrin-6x r 83.5 8.7 0.00019 35.6 9.1 93 7-145 2-100 (248)
180 COG3660 Predicted nucleoside-d 82.9 40 0.00086 31.2 18.6 96 282-390 163-271 (329)
181 PF05159 Capsule_synth: Capsul 82.0 6.7 0.00014 36.9 8.1 43 347-392 184-226 (269)
182 PRK06988 putative formyltransf 81.8 11 0.00025 36.2 9.6 33 7-44 2-34 (312)
183 cd03788 GT1_TPS Trehalose-6-Ph 81.7 4.7 0.0001 41.3 7.4 105 350-484 345-459 (460)
184 PLN03063 alpha,alpha-trehalose 81.6 4.7 0.0001 44.3 7.7 101 357-487 370-478 (797)
185 PRK05973 replicative DNA helic 81.0 9.1 0.0002 35.2 8.2 47 7-53 64-110 (237)
186 COG1066 Sms Predicted ATP-depe 80.4 18 0.00039 35.8 10.2 106 7-146 93-219 (456)
187 cd03793 GT1_Glycogen_synthase_ 80.2 5.6 0.00012 41.3 7.2 79 356-443 468-551 (590)
188 PRK13789 phosphoribosylamine-- 79.7 4.4 9.5E-05 41.0 6.3 91 6-141 3-96 (426)
189 TIGR00460 fmt methionyl-tRNA f 79.6 11 0.00024 36.3 8.8 32 8-44 1-32 (313)
190 PRK13931 stationary phase surv 79.2 17 0.00038 33.8 9.5 113 8-145 1-129 (261)
191 COG0132 BioD Dethiobiotin synt 79.1 23 0.00049 32.2 9.9 37 7-43 1-39 (223)
192 PF04464 Glyphos_transf: CDP-G 79.1 4.9 0.00011 39.8 6.4 115 345-481 251-367 (369)
193 cd02070 corrinoid_protein_B12- 79.0 17 0.00037 32.4 9.3 47 6-52 81-127 (201)
194 PF04127 DFP: DNA / pantothena 78.6 1.1 2.4E-05 39.4 1.4 40 6-45 2-53 (185)
195 PF01012 ETF: Electron transfe 77.8 7.9 0.00017 33.2 6.6 110 9-145 1-122 (164)
196 PRK07313 phosphopantothenoylcy 77.8 2.8 6.1E-05 36.8 3.7 45 7-52 1-45 (182)
197 COG2910 Putative NADH-flavin r 77.2 2.9 6.4E-05 36.2 3.5 33 8-44 1-33 (211)
198 cd01121 Sms Sms (bacterial rad 76.1 35 0.00077 33.8 11.3 43 9-51 84-126 (372)
199 TIGR01285 nifN nitrogenase mol 75.9 23 0.00051 35.9 10.2 88 6-143 310-397 (432)
200 cd01974 Nitrogenase_MoFe_beta 75.9 26 0.00055 35.6 10.6 36 106-144 367-402 (435)
201 TIGR00639 PurN phosphoribosylg 74.9 44 0.00096 29.5 10.5 100 8-143 1-107 (190)
202 PF02571 CbiJ: Precorrin-6x re 74.9 18 0.00039 33.5 8.4 95 8-145 1-101 (249)
203 TIGR02370 pyl_corrinoid methyl 74.1 37 0.00081 30.2 10.0 47 7-53 84-130 (197)
204 COG2099 CobK Precorrin-6x redu 74.1 23 0.0005 32.5 8.5 92 7-143 2-99 (257)
205 cd01965 Nitrogenase_MoFe_beta_ 73.3 26 0.00057 35.5 9.9 35 106-143 361-395 (428)
206 PRK06029 3-octaprenyl-4-hydrox 73.1 4.8 0.0001 35.4 4.0 46 7-53 1-47 (185)
207 cd03466 Nitrogenase_NifN_2 Nit 72.9 45 0.00097 33.8 11.4 35 106-143 362-396 (429)
208 COG0438 RfaG Glycosyltransfera 72.3 86 0.0019 29.4 16.3 78 346-443 257-341 (381)
209 PF02142 MGS: MGS-like domain 72.2 5.4 0.00012 30.7 3.7 84 24-141 2-94 (95)
210 TIGR03878 thermo_KaiC_2 KaiC d 71.6 52 0.0011 30.7 10.8 41 7-47 36-76 (259)
211 PRK06732 phosphopantothenate-- 71.0 4.5 9.7E-05 37.0 3.5 36 8-43 1-48 (229)
212 PF12146 Hydrolase_4: Putative 70.8 7.9 0.00017 28.6 4.1 36 7-42 15-50 (79)
213 smart00851 MGS MGS-like domain 70.7 43 0.00092 25.3 8.4 79 24-141 2-89 (90)
214 PRK01077 cobyrinic acid a,c-di 70.6 43 0.00094 34.2 10.8 38 6-43 2-40 (451)
215 PRK05920 aromatic acid decarbo 70.4 6.4 0.00014 35.2 4.1 45 7-52 3-47 (204)
216 PF02310 B12-binding: B12 bind 69.8 15 0.00033 29.4 6.1 44 8-51 1-44 (121)
217 PRK09620 hypothetical protein; 69.7 6.2 0.00013 36.1 4.0 39 6-44 2-52 (229)
218 cd01980 Chlide_reductase_Y Chl 69.6 33 0.00073 34.6 9.7 33 109-144 343-375 (416)
219 cd01424 MGS_CPS_II Methylglyox 69.5 44 0.00096 26.3 8.6 84 19-142 10-100 (110)
220 PF04413 Glycos_transf_N: 3-De 69.3 14 0.00031 32.5 6.1 93 16-145 29-126 (186)
221 PRK13195 pyrrolidone-carboxyla 68.8 15 0.00032 33.3 6.1 27 7-33 1-29 (222)
222 PRK11823 DNA repair protein Ra 68.5 55 0.0012 33.3 11.0 44 8-51 81-124 (446)
223 cd00532 MGS-like MGS-like doma 67.9 58 0.0013 25.8 8.9 84 20-142 10-104 (112)
224 TIGR02015 BchY chlorophyllide 67.3 41 0.00088 34.0 9.7 91 8-144 286-380 (422)
225 COG1484 DnaC DNA replication p 67.1 9.6 0.00021 35.5 4.8 48 6-53 104-151 (254)
226 PRK00005 fmt methionyl-tRNA fo 65.9 61 0.0013 31.2 10.3 31 8-43 1-31 (309)
227 PRK13011 formyltetrahydrofolat 65.7 63 0.0014 30.7 10.0 102 5-143 87-193 (286)
228 PF06925 MGDG_synth: Monogalac 65.6 17 0.00036 31.4 5.8 25 103-127 76-100 (169)
229 TIGR00347 bioD dethiobiotin sy 65.4 45 0.00098 28.4 8.5 27 15-41 6-32 (166)
230 TIGR02655 circ_KaiC circadian 65.4 72 0.0016 32.9 11.3 47 7-53 263-309 (484)
231 TIGR02852 spore_dpaB dipicolin 65.2 8.9 0.00019 33.7 3.9 41 8-48 1-41 (187)
232 PRK13982 bifunctional SbtC-lik 64.9 7.9 0.00017 39.4 4.0 41 5-45 254-306 (475)
233 cd01423 MGS_CPS_I_III Methylgl 64.8 47 0.001 26.5 7.9 93 12-141 4-105 (116)
234 COG0223 Fmt Methionyl-tRNA for 64.5 14 0.00031 35.1 5.5 35 7-46 1-35 (307)
235 PRK06027 purU formyltetrahydro 64.4 64 0.0014 30.6 9.8 85 5-126 87-175 (286)
236 TIGR01283 nifE nitrogenase mol 63.7 80 0.0017 32.3 11.2 35 106-143 385-419 (456)
237 PRK05541 adenylylsulfate kinas 63.4 97 0.0021 26.6 11.0 42 1-42 1-42 (176)
238 PRK14478 nitrogenase molybdenu 63.2 64 0.0014 33.2 10.4 34 106-142 383-416 (475)
239 PRK10867 signal recognition pa 62.8 29 0.00063 35.1 7.5 44 8-51 101-145 (433)
240 cd00550 ArsA_ATPase Oxyanion-t 62.6 34 0.00074 31.8 7.6 43 10-53 3-45 (254)
241 cd01968 Nitrogenase_NifE_I Nit 62.4 60 0.0013 32.7 9.9 35 106-143 346-380 (410)
242 PF00448 SRP54: SRP54-type pro 62.2 20 0.00044 31.8 5.7 40 9-48 3-42 (196)
243 COG4370 Uncharacterized protei 62.0 37 0.00079 32.2 7.3 60 352-414 301-362 (412)
244 PRK04328 hypothetical protein; 61.9 1.1E+02 0.0024 28.2 10.9 46 7-52 23-68 (249)
245 TIGR00416 sms DNA repair prote 61.8 23 0.00049 36.2 6.7 44 8-51 95-138 (454)
246 PRK00994 F420-dependent methyl 61.4 85 0.0018 28.5 9.2 37 7-43 2-39 (277)
247 cd01977 Nitrogenase_VFe_alpha 60.3 51 0.0011 33.3 8.9 34 107-143 349-382 (415)
248 PRK08125 bifunctional UDP-gluc 60.1 78 0.0017 34.2 10.8 40 107-146 66-106 (660)
249 PLN02924 thymidylate kinase 59.8 92 0.002 28.2 9.7 39 6-44 15-53 (220)
250 PRK02155 ppnK NAD(+)/NADH kina 59.5 33 0.00071 32.7 7.0 55 359-443 60-118 (291)
251 PRK13196 pyrrolidone-carboxyla 59.4 20 0.00043 32.3 5.2 28 7-34 1-30 (211)
252 cd01124 KaiC KaiC is a circadi 59.3 33 0.00072 29.8 6.7 44 10-53 2-45 (187)
253 TIGR03880 KaiC_arch_3 KaiC dom 59.2 90 0.0019 28.2 9.7 47 7-53 16-62 (224)
254 COG0052 RpsB Ribosomal protein 58.9 95 0.0021 28.5 9.3 30 117-146 157-188 (252)
255 TIGR01425 SRP54_euk signal rec 58.8 44 0.00096 33.7 8.0 41 8-48 101-141 (429)
256 cd02071 MM_CoA_mut_B12_BD meth 58.8 24 0.00052 28.5 5.2 42 9-50 1-42 (122)
257 PRK11889 flhF flagellar biosyn 58.4 58 0.0012 32.5 8.4 41 7-47 241-281 (436)
258 PRK10490 sensor protein KdpD; 58.1 24 0.00053 39.5 6.7 48 6-53 23-71 (895)
259 COG2185 Sbm Methylmalonyl-CoA 58.0 25 0.00055 29.2 5.1 45 6-50 11-55 (143)
260 COG2874 FlaH Predicted ATPases 57.9 95 0.0021 28.0 8.9 88 17-127 38-134 (235)
261 PF08433 KTI12: Chromatin asso 57.9 85 0.0018 29.5 9.4 104 7-150 1-110 (270)
262 PRK06249 2-dehydropantoate 2-r 57.2 25 0.00054 33.9 5.9 36 5-45 3-38 (313)
263 TIGR02195 heptsyl_trn_II lipop 56.9 1.4E+02 0.0031 28.7 11.4 101 7-146 174-279 (334)
264 KOG3339 Predicted glycosyltran 56.9 1.3E+02 0.0027 26.4 9.1 26 8-34 39-64 (211)
265 PRK00784 cobyric acid synthase 56.6 1.3E+02 0.0029 31.0 11.4 35 9-43 4-39 (488)
266 TIGR02113 coaC_strep phosphopa 56.4 13 0.00028 32.5 3.4 42 9-51 2-43 (177)
267 TIGR03499 FlhF flagellar biosy 55.9 57 0.0012 30.9 8.0 39 9-47 196-236 (282)
268 PRK07206 hypothetical protein; 55.8 42 0.00091 33.7 7.6 32 8-44 3-34 (416)
269 COG1748 LYS9 Saccharopine dehy 55.7 85 0.0018 31.2 9.2 97 7-147 1-102 (389)
270 PF01210 NAD_Gly3P_dh_N: NAD-d 55.7 7.7 0.00017 33.1 1.9 32 9-45 1-32 (157)
271 PRK05595 replicative DNA helic 55.5 88 0.0019 31.9 9.8 44 9-52 203-247 (444)
272 PRK06321 replicative DNA helic 55.0 1.1E+02 0.0023 31.5 10.2 44 9-52 228-272 (472)
273 TIGR00421 ubiX_pad polyprenyl 54.9 14 0.00031 32.3 3.4 43 9-52 1-43 (181)
274 COG1927 Mtd Coenzyme F420-depe 54.7 77 0.0017 28.1 7.6 37 7-43 2-39 (277)
275 PRK08760 replicative DNA helic 54.5 59 0.0013 33.5 8.3 43 9-51 231-274 (476)
276 PRK12342 hypothetical protein; 54.2 23 0.00051 32.8 4.9 39 108-146 101-145 (254)
277 PF05728 UPF0227: Uncharacteri 54.1 34 0.00075 30.1 5.7 46 105-150 46-94 (187)
278 PRK14501 putative bifunctional 54.0 28 0.0006 38.0 6.3 112 349-487 345-463 (726)
279 TIGR01286 nifK nitrogenase mol 54.0 1E+02 0.0022 32.1 10.0 35 106-143 427-461 (515)
280 KOG2941 Beta-1,4-mannosyltrans 53.9 2.2E+02 0.0048 27.8 27.4 128 5-150 10-142 (444)
281 CHL00072 chlL photochlorophyll 53.7 24 0.00052 33.6 5.1 39 8-46 1-39 (290)
282 COG0859 RfaF ADP-heptose:LPS h 53.5 46 0.001 32.4 7.2 100 7-146 175-279 (334)
283 TIGR02700 flavo_MJ0208 archaeo 53.5 21 0.00045 32.8 4.5 45 9-53 1-47 (234)
284 cd01985 ETF The electron trans 53.4 1.5E+02 0.0033 25.7 9.8 39 105-143 80-121 (181)
285 PRK12724 flagellar biosynthesi 53.0 82 0.0018 31.7 8.7 44 9-52 225-269 (432)
286 PRK06395 phosphoribosylamine-- 52.9 68 0.0015 32.6 8.4 32 7-43 2-33 (435)
287 TIGR02699 archaeo_AfpA archaeo 52.8 21 0.00046 30.9 4.1 44 9-53 1-46 (174)
288 PRK05579 bifunctional phosphop 52.8 21 0.00047 35.6 4.7 48 5-53 4-51 (399)
289 PRK11199 tyrA bifunctional cho 52.6 1.2E+02 0.0026 30.0 10.0 34 6-44 97-131 (374)
290 cd02032 Bchl_like This family 52.4 24 0.00051 33.1 4.8 36 8-43 1-36 (267)
291 PRK09739 hypothetical protein; 52.4 35 0.00075 30.3 5.6 38 5-42 1-41 (199)
292 cd03114 ArgK-like The function 52.3 1.3E+02 0.0027 25.3 8.7 36 10-45 2-37 (148)
293 cd03115 SRP The signal recogni 52.2 1.4E+02 0.0029 25.6 9.3 40 10-49 3-42 (173)
294 TIGR03446 mycothiol_Mca mycoth 52.0 98 0.0021 29.3 8.8 20 103-122 108-127 (283)
295 PRK06067 flagellar accessory p 51.9 41 0.00088 30.7 6.2 46 7-52 25-70 (234)
296 COG4088 Predicted nucleotide k 51.7 20 0.00044 32.0 3.7 37 7-43 1-37 (261)
297 PLN02285 methionyl-tRNA formyl 51.5 1E+02 0.0023 30.0 9.1 40 107-146 84-124 (334)
298 TIGR00521 coaBC_dfp phosphopan 51.4 19 0.00041 35.8 4.1 47 6-53 2-48 (390)
299 TIGR00959 ffh signal recogniti 51.1 96 0.0021 31.4 9.0 42 9-50 101-143 (428)
300 TIGR01862 N2-ase-Ialpha nitrog 51.0 79 0.0017 32.2 8.6 35 106-143 377-411 (443)
301 cd07025 Peptidase_S66 LD-Carbo 50.5 29 0.00064 32.8 5.1 76 294-395 46-123 (282)
302 COG0541 Ffh Signal recognition 50.5 66 0.0014 32.2 7.4 48 6-53 99-146 (451)
303 PRK14476 nitrogenase molybdenu 50.5 1.2E+02 0.0026 31.1 9.8 86 6-143 310-395 (455)
304 cd07038 TPP_PYR_PDC_IPDC_like 50.1 84 0.0018 26.8 7.5 26 367-392 62-93 (162)
305 PRK05784 phosphoribosylamine-- 50.1 54 0.0012 33.8 7.2 31 8-43 1-33 (486)
306 PLN02929 NADH kinase 49.6 24 0.00052 33.6 4.2 65 361-443 63-136 (301)
307 TIGR02237 recomb_radB DNA repa 49.5 1.6E+02 0.0035 26.1 9.6 44 9-52 14-58 (209)
308 TIGR01281 DPOR_bchL light-inde 49.4 28 0.00062 32.5 4.8 35 8-42 1-35 (268)
309 TIGR03877 thermo_KaiC_1 KaiC d 49.3 1.1E+02 0.0024 28.0 8.6 47 6-52 20-66 (237)
310 cd01122 GP4d_helicase GP4d_hel 49.2 18 0.00038 34.0 3.4 45 8-52 31-76 (271)
311 cd07035 TPP_PYR_POX_like Pyrim 48.9 1.2E+02 0.0027 25.3 8.3 26 367-392 62-93 (155)
312 COG1348 NifH Nitrogenase subun 48.7 42 0.00091 30.6 5.3 47 7-53 1-47 (278)
313 KOG0780 Signal recognition par 48.7 29 0.00062 34.1 4.6 44 7-50 101-144 (483)
314 cd02069 methionine_synthase_B1 48.6 44 0.00095 30.1 5.7 47 6-52 87-133 (213)
315 PRK09165 replicative DNA helic 48.4 1.3E+02 0.0028 31.2 9.8 43 10-52 220-277 (497)
316 cd07039 TPP_PYR_POX Pyrimidine 48.1 78 0.0017 27.1 6.9 25 367-391 66-96 (164)
317 PF00148 Oxidored_nitro: Nitro 47.9 1E+02 0.0023 30.7 8.9 95 7-143 271-365 (398)
318 PRK12767 carbamoyl phosphate s 47.5 81 0.0018 30.3 7.9 32 7-44 1-34 (326)
319 PF04244 DPRP: Deoxyribodipyri 47.2 23 0.00051 32.2 3.7 25 20-44 47-71 (224)
320 PF01075 Glyco_transf_9: Glyco 47.1 1.1E+02 0.0023 28.0 8.3 101 6-147 104-212 (247)
321 COG1036 Archaeal flavoproteins 47.0 41 0.00088 28.5 4.6 52 1-53 1-56 (187)
322 TIGR00877 purD phosphoribosyla 47.0 90 0.002 31.4 8.4 34 8-46 1-34 (423)
323 cd07037 TPP_PYR_MenD Pyrimidin 46.8 87 0.0019 26.8 7.0 25 368-392 64-94 (162)
324 PRK12475 thiamine/molybdopteri 46.8 98 0.0021 30.2 8.2 32 6-42 23-55 (338)
325 PRK10916 ADP-heptose:LPS hepto 46.8 1.9E+02 0.0041 28.2 10.4 104 8-146 181-289 (348)
326 PRK03359 putative electron tra 46.5 34 0.00073 31.9 4.6 39 108-146 104-148 (256)
327 TIGR00708 cobA cob(I)alamin ad 46.3 2E+02 0.0043 25.0 10.9 95 9-126 7-107 (173)
328 PRK12921 2-dehydropantoate 2-r 46.1 34 0.00073 32.6 4.9 31 8-43 1-31 (305)
329 cd02040 NifH NifH gene encodes 46.1 35 0.00077 31.8 4.9 38 7-44 1-38 (270)
330 cd00316 Oxidoreductase_nitroge 45.7 2.1E+02 0.0045 28.5 10.7 35 106-143 338-372 (399)
331 PF02585 PIG-L: GlcNAc-PI de-N 45.7 83 0.0018 25.4 6.5 23 102-124 86-108 (128)
332 PRK13768 GTPase; Provisional 45.7 65 0.0014 29.9 6.5 37 9-45 4-40 (253)
333 PF10093 DUF2331: Uncharacteri 45.5 3.1E+02 0.0068 27.1 12.2 101 294-402 192-298 (374)
334 TIGR01501 MthylAspMutase methy 45.4 60 0.0013 26.8 5.5 45 8-52 2-46 (134)
335 cd07062 Peptidase_S66_mccF_lik 45.2 35 0.00075 32.8 4.7 75 294-394 50-126 (308)
336 COG2085 Predicted dinucleotide 45.0 38 0.00082 30.3 4.5 36 7-47 1-36 (211)
337 PRK13234 nifH nitrogenase redu 45.0 42 0.00092 32.0 5.3 38 6-43 3-40 (295)
338 PRK14619 NAD(P)H-dependent gly 44.8 48 0.001 31.8 5.7 35 6-45 3-37 (308)
339 PRK06718 precorrin-2 dehydroge 44.8 2.3E+02 0.0049 25.3 10.9 151 274-465 5-164 (202)
340 PRK12815 carB carbamoyl phosph 44.7 2.1E+02 0.0045 33.0 11.4 44 1-44 1-50 (1068)
341 PF03308 ArgK: ArgK protein; 44.6 36 0.00079 31.6 4.4 119 6-142 28-149 (266)
342 PRK04885 ppnK inorganic polyph 44.5 31 0.00067 32.3 4.1 52 362-443 35-92 (265)
343 PRK12726 flagellar biosynthesi 44.5 94 0.002 30.9 7.5 40 9-48 208-247 (407)
344 PRK05632 phosphate acetyltrans 44.4 2.7E+02 0.0058 30.3 11.8 35 9-43 4-39 (684)
345 TIGR00750 lao LAO/AO transport 44.4 1.1E+02 0.0024 29.2 8.1 41 6-46 33-73 (300)
346 PRK14477 bifunctional nitrogen 44.1 1.7E+02 0.0038 32.9 10.5 37 106-145 379-415 (917)
347 cd01141 TroA_d Periplasmic bin 44.0 39 0.00084 29.4 4.6 35 110-144 63-99 (186)
348 PLN02935 Bifunctional NADH kin 44.0 27 0.00059 35.7 3.8 53 361-443 261-317 (508)
349 PRK14569 D-alanyl-alanine synt 43.9 48 0.001 31.6 5.5 38 6-43 2-43 (296)
350 PRK13194 pyrrolidone-carboxyla 43.9 52 0.0011 29.6 5.3 26 8-33 1-28 (208)
351 COG0287 TyrA Prephenate dehydr 43.6 2E+02 0.0044 27.2 9.4 43 6-53 2-44 (279)
352 PF07991 IlvN: Acetohydroxy ac 43.5 23 0.00051 30.2 2.8 41 6-51 3-43 (165)
353 PRK06522 2-dehydropantoate 2-r 43.4 29 0.00063 33.0 4.0 31 8-43 1-31 (304)
354 PRK14077 pnk inorganic polypho 43.1 33 0.00072 32.5 4.2 56 358-443 60-119 (287)
355 PF01695 IstB_IS21: IstB-like 43.1 36 0.00077 29.7 4.1 46 6-51 46-91 (178)
356 PF02702 KdpD: Osmosensitive K 43.0 44 0.00096 29.7 4.5 41 6-46 4-44 (211)
357 PRK00885 phosphoribosylamine-- 43.0 63 0.0014 32.6 6.5 30 8-42 1-31 (420)
358 PLN02331 phosphoribosylglycina 43.0 2.2E+02 0.0048 25.5 9.2 38 106-143 68-106 (207)
359 COG0801 FolK 7,8-dihydro-6-hyd 42.9 51 0.0011 28.1 4.8 32 283-314 3-35 (160)
360 PRK08229 2-dehydropantoate 2-r 42.8 26 0.00057 34.1 3.6 33 7-44 2-34 (341)
361 PRK01911 ppnK inorganic polyph 42.7 33 0.00072 32.6 4.1 56 358-443 60-119 (292)
362 PRK11519 tyrosine kinase; Prov 42.7 1.1E+02 0.0025 33.3 8.7 41 6-46 524-566 (719)
363 TIGR01007 eps_fam capsular exo 42.3 50 0.0011 29.3 5.1 37 8-44 17-55 (204)
364 cd00561 CobA_CobO_BtuR ATP:cor 42.3 2.2E+02 0.0047 24.3 11.5 34 9-42 4-37 (159)
365 COG3195 Uncharacterized protei 42.3 1.2E+02 0.0027 25.8 6.7 97 354-464 63-164 (176)
366 PRK13197 pyrrolidone-carboxyla 42.3 51 0.0011 29.8 5.1 27 7-33 1-29 (215)
367 COG0467 RAD55 RecA-superfamily 42.2 55 0.0012 30.5 5.5 48 6-53 22-69 (260)
368 PRK09435 membrane ATPase/prote 42.1 2.1E+02 0.0045 27.9 9.5 43 6-48 55-97 (332)
369 KOG1209 1-Acyl dihydroxyaceton 42.0 36 0.00079 30.5 3.8 37 1-42 1-39 (289)
370 COG0299 PurN Folate-dependent 41.8 2.5E+02 0.0054 24.9 9.1 87 8-127 1-90 (200)
371 PF09001 DUF1890: Domain of un 41.7 31 0.00068 28.3 3.2 35 19-53 11-45 (139)
372 PF08323 Glyco_transf_5: Starc 41.5 26 0.00056 32.4 3.1 24 22-45 20-43 (245)
373 PRK13982 bifunctional SbtC-lik 41.2 36 0.00077 34.8 4.2 47 6-53 69-115 (475)
374 PRK13230 nitrogenase reductase 41.1 49 0.0011 31.2 5.0 36 7-42 1-36 (279)
375 TIGR01861 ANFD nitrogenase iro 40.9 2.3E+02 0.005 29.5 10.1 33 108-143 390-422 (513)
376 PRK06719 precorrin-2 dehydroge 40.2 47 0.001 28.3 4.3 35 5-44 11-45 (157)
377 PRK09302 circadian clock prote 40.2 49 0.0011 34.4 5.3 47 7-53 273-319 (509)
378 PF03446 NAD_binding_2: NAD bi 40.0 29 0.00063 29.7 3.0 31 7-42 1-31 (163)
379 TIGR02201 heptsyl_trn_III lipo 39.6 3.4E+02 0.0073 26.3 10.9 101 8-146 182-288 (344)
380 PRK03378 ppnK inorganic polyph 39.5 45 0.00098 31.7 4.5 56 358-443 59-118 (292)
381 TIGR01279 DPOR_bchN light-inde 39.4 1.6E+02 0.0034 29.7 8.6 36 6-46 273-308 (407)
382 PRK05636 replicative DNA helic 38.9 1.3E+02 0.0028 31.3 8.0 43 9-51 267-310 (505)
383 PRK04539 ppnK inorganic polyph 38.8 51 0.0011 31.5 4.7 57 357-443 63-123 (296)
384 cd01976 Nitrogenase_MoFe_alpha 38.8 39 0.00084 34.1 4.2 36 106-144 359-394 (421)
385 TIGR01380 glut_syn glutathione 38.7 51 0.0011 31.8 4.8 39 8-46 1-42 (312)
386 KOG1250 Threonine/serine dehyd 38.7 4.1E+02 0.0089 26.5 13.1 66 362-443 242-315 (457)
387 PRK00039 ruvC Holliday junctio 38.7 79 0.0017 27.2 5.4 49 99-147 44-107 (164)
388 PRK13896 cobyrinic acid a,c-di 38.6 3.8E+02 0.0083 27.2 11.1 35 9-43 3-38 (433)
389 PRK09423 gldA glycerol dehydro 38.5 2.5E+02 0.0054 27.7 9.8 41 107-147 75-118 (366)
390 PF07355 GRDB: Glycine/sarcosi 38.4 69 0.0015 31.1 5.4 42 102-143 66-117 (349)
391 CHL00076 chlB photochlorophyll 38.4 44 0.00096 34.7 4.6 36 106-144 364-399 (513)
392 PRK07773 replicative DNA helic 38.4 2E+02 0.0044 32.3 10.0 44 9-52 219-263 (886)
393 KOG0853 Glycosyltransferase [C 38.3 31 0.00067 35.3 3.2 53 376-444 381-433 (495)
394 PLN02240 UDP-glucose 4-epimera 38.3 53 0.0011 31.9 5.0 34 6-43 4-37 (352)
395 PRK02649 ppnK inorganic polyph 38.3 34 0.00073 32.8 3.4 55 359-443 65-123 (305)
396 cd02065 B12-binding_like B12 b 38.2 78 0.0017 25.2 5.2 43 10-52 2-44 (125)
397 PRK05986 cob(I)alamin adenolsy 37.8 2.9E+02 0.0063 24.4 12.0 102 6-126 21-125 (191)
398 PLN02470 acetolactate synthase 37.8 1.2E+02 0.0026 32.1 7.9 92 287-391 2-109 (585)
399 PRK05114 hypothetical protein; 37.6 93 0.002 21.2 4.3 34 451-488 12-45 (59)
400 PF00862 Sucrose_synth: Sucros 37.5 1.1E+02 0.0025 31.3 6.9 34 115-148 400-435 (550)
401 PRK11064 wecC UDP-N-acetyl-D-m 37.5 45 0.00098 33.6 4.4 33 6-43 2-34 (415)
402 PRK02231 ppnK inorganic polyph 37.4 54 0.0012 30.9 4.5 58 356-443 36-97 (272)
403 PF06745 KaiC: KaiC; InterPro 37.4 84 0.0018 28.4 5.9 47 7-53 19-66 (226)
404 PF06564 YhjQ: YhjQ protein; 37.3 65 0.0014 29.7 4.9 37 7-43 1-38 (243)
405 PRK03372 ppnK inorganic polyph 37.2 49 0.0011 31.7 4.3 55 359-443 69-127 (306)
406 PRK04940 hypothetical protein; 37.2 79 0.0017 27.6 5.2 32 116-147 60-92 (180)
407 TIGR02114 coaB_strep phosphopa 37.0 34 0.00073 31.2 3.1 18 25-42 29-46 (227)
408 cd02034 CooC The accessory pro 36.8 85 0.0018 25.1 5.1 37 9-45 1-37 (116)
409 KOG3062 RNA polymerase II elon 36.8 74 0.0016 28.9 4.9 37 7-43 1-38 (281)
410 PRK05703 flhF flagellar biosyn 36.7 1.7E+02 0.0037 29.6 8.4 41 8-48 222-264 (424)
411 COG1435 Tdk Thymidine kinase [ 36.7 3.1E+02 0.0066 24.4 9.0 40 6-45 2-42 (201)
412 PRK08591 acetyl-CoA carboxylas 36.6 2E+02 0.0043 29.3 9.0 33 7-44 2-34 (451)
413 PRK02910 light-independent pro 36.5 52 0.0011 34.3 4.7 36 106-144 352-387 (519)
414 TIGR01470 cysG_Nterm siroheme 36.3 3.1E+02 0.0068 24.4 12.2 154 274-465 4-164 (205)
415 COG2861 Uncharacterized protei 36.3 3.4E+02 0.0074 24.9 9.1 28 116-143 149-179 (250)
416 PF05693 Glycogen_syn: Glycoge 36.1 90 0.0019 32.8 6.2 93 355-462 462-565 (633)
417 PRK05772 translation initiatio 36.0 2.3E+02 0.0051 27.9 8.8 38 8-45 168-209 (363)
418 PRK03767 NAD(P)H:quinone oxido 35.9 67 0.0015 28.5 4.8 37 7-43 1-39 (200)
419 PRK13235 nifH nitrogenase redu 35.9 60 0.0013 30.5 4.8 35 8-42 2-36 (274)
420 cd01973 Nitrogenase_VFe_beta_l 35.9 3.4E+02 0.0074 27.8 10.4 35 106-143 369-405 (454)
421 COG0205 PfkA 6-phosphofructoki 35.8 2.3E+02 0.0051 27.7 8.7 118 7-143 2-124 (347)
422 PRK12723 flagellar biosynthesi 35.7 2.5E+02 0.0054 28.0 9.1 45 8-52 175-223 (388)
423 TIGR00345 arsA arsenite-activa 35.7 1.7E+02 0.0036 27.8 7.7 24 25-48 3-26 (284)
424 COG0240 GpsA Glycerol-3-phosph 35.6 48 0.001 32.0 3.9 34 7-45 1-34 (329)
425 cd08783 Death_MALT1 Death doma 35.6 1.3E+02 0.0029 23.0 5.4 35 394-443 20-54 (97)
426 COG0059 IlvC Ketol-acid reduct 35.5 55 0.0012 31.1 4.1 54 5-70 16-69 (338)
427 COG0503 Apt Adenine/guanine ph 35.1 1E+02 0.0022 26.9 5.7 37 107-143 44-82 (179)
428 PRK06731 flhF flagellar biosyn 35.1 3E+02 0.0065 25.9 9.1 41 7-47 75-115 (270)
429 PRK06371 translation initiatio 34.8 2.5E+02 0.0054 27.2 8.6 18 129-146 241-258 (329)
430 PF02056 Glyco_hydro_4: Family 34.7 1.5E+02 0.0033 26.0 6.6 122 19-150 39-173 (183)
431 cd01981 Pchlide_reductase_B Pc 34.6 59 0.0013 32.9 4.7 37 106-145 360-396 (430)
432 PLN02735 carbamoyl-phosphate s 34.6 2.6E+02 0.0057 32.3 10.2 38 7-44 23-66 (1102)
433 TIGR01278 DPOR_BchB light-inde 34.4 56 0.0012 34.0 4.6 36 107-145 355-390 (511)
434 PF03721 UDPG_MGDP_dh_N: UDP-g 34.4 60 0.0013 28.5 4.2 32 8-44 1-32 (185)
435 PLN00016 RNA-binding protein; 34.3 49 0.0011 32.8 4.1 38 7-44 52-89 (378)
436 COG0163 UbiX 3-polyprenyl-4-hy 34.2 86 0.0019 27.3 4.8 46 7-53 2-47 (191)
437 PRK13604 luxD acyl transferase 34.1 85 0.0018 30.1 5.3 37 6-42 35-71 (307)
438 KOG2825 Putative arsenite-tran 34.0 2.9E+02 0.0064 25.7 8.3 45 5-49 16-61 (323)
439 PF14336 DUF4392: Domain of un 34.0 51 0.0011 31.4 3.9 30 24-53 65-94 (291)
440 PRK06756 flavodoxin; Provision 34.0 77 0.0017 26.4 4.7 37 7-43 1-38 (148)
441 PRK13010 purU formyltetrahydro 33.7 3.6E+02 0.0078 25.6 9.5 101 5-142 91-196 (289)
442 TIGR00524 eIF-2B_rel eIF-2B al 33.7 1.7E+02 0.0038 28.0 7.4 19 129-147 223-241 (303)
443 PF06506 PrpR_N: Propionate ca 33.6 44 0.00096 29.0 3.2 66 361-441 33-121 (176)
444 PRK00094 gpsA NAD(P)H-dependen 33.5 46 0.00099 32.1 3.6 33 7-44 1-33 (325)
445 PRK09219 xanthine phosphoribos 33.5 1.1E+02 0.0024 27.0 5.7 41 104-144 38-80 (189)
446 cd06320 PBP1_allose_binding Pe 33.1 3.1E+02 0.0068 25.1 9.2 33 112-144 53-89 (275)
447 PF01008 IF-2B: Initiation fac 33.0 79 0.0017 29.8 5.1 31 116-146 183-219 (282)
448 PRK12828 short chain dehydroge 32.9 89 0.0019 28.1 5.3 39 1-43 1-39 (239)
449 PRK12825 fabG 3-ketoacyl-(acyl 32.7 1E+02 0.0023 27.7 5.8 37 5-45 4-40 (249)
450 PF02776 TPP_enzyme_N: Thiamin 32.7 1E+02 0.0022 26.5 5.3 30 362-393 64-99 (172)
451 cd00501 Peptidase_C15 Pyroglut 32.7 1.1E+02 0.0025 26.9 5.7 28 8-35 1-30 (194)
452 PF02016 Peptidase_S66: LD-car 32.4 48 0.001 31.5 3.4 73 295-393 47-121 (284)
453 PRK04148 hypothetical protein; 32.2 91 0.002 25.8 4.5 34 6-45 16-49 (134)
454 PLN02695 GDP-D-mannose-3',5'-e 32.2 94 0.002 30.7 5.7 35 5-43 19-53 (370)
455 COG0569 TrkA K+ transport syst 32.1 54 0.0012 29.9 3.6 33 8-45 1-33 (225)
456 PRK06835 DNA replication prote 32.1 67 0.0014 31.2 4.4 44 8-51 184-227 (329)
457 TIGR00512 salvage_mtnA S-methy 31.9 2.6E+02 0.0056 27.2 8.3 20 128-147 250-269 (331)
458 cd01715 ETF_alpha The electron 31.8 1E+02 0.0022 26.5 5.1 42 104-145 71-115 (168)
459 PRK01231 ppnK inorganic polyph 31.8 82 0.0018 30.1 4.9 55 359-443 59-117 (295)
460 COG0771 MurD UDP-N-acetylmuram 31.8 74 0.0016 32.3 4.8 37 6-47 6-42 (448)
461 PRK13236 nitrogenase reductase 31.7 96 0.0021 29.6 5.4 37 7-43 6-42 (296)
462 KOG1111 N-acetylglucosaminyltr 31.7 1.1E+02 0.0024 29.8 5.6 44 345-390 251-301 (426)
463 PRK13232 nifH nitrogenase redu 31.7 75 0.0016 29.8 4.7 35 8-42 2-36 (273)
464 cd03789 GT1_LPS_heptosyltransf 31.7 2.3E+02 0.005 26.5 8.0 101 8-146 122-226 (279)
465 PRK08535 translation initiatio 31.7 1.3E+02 0.0028 29.0 6.2 32 116-147 195-232 (310)
466 PRK05720 mtnA methylthioribose 31.5 2.6E+02 0.0056 27.4 8.3 19 128-146 250-268 (344)
467 TIGR02329 propionate_PrpR prop 31.4 3.2E+02 0.007 28.5 9.5 35 109-146 138-172 (526)
468 PF03701 UPF0181: Uncharacteri 31.4 1.2E+02 0.0027 20.0 4.0 33 452-488 13-45 (51)
469 cd01018 ZntC Metal binding pro 31.2 4.4E+02 0.0095 24.5 10.8 44 104-147 205-250 (266)
470 COG2120 Uncharacterized protei 31.2 86 0.0019 28.8 4.8 39 5-44 8-47 (237)
471 cd01075 NAD_bind_Leu_Phe_Val_D 31.1 73 0.0016 28.4 4.2 32 5-41 26-57 (200)
472 TIGR01369 CPSaseII_lrg carbamo 31.0 3E+02 0.0066 31.7 10.0 38 6-43 553-596 (1050)
473 TIGR00173 menD 2-succinyl-5-en 31.0 2.6E+02 0.0057 28.2 8.8 26 366-391 65-96 (432)
474 cd01983 Fer4_NifH The Fer4_Nif 30.9 1.2E+02 0.0025 22.4 4.9 33 10-42 2-34 (99)
475 PRK12815 carB carbamoyl phosph 30.8 3.3E+02 0.0071 31.5 10.2 39 6-44 554-598 (1068)
476 PRK03094 hypothetical protein; 30.7 47 0.001 24.6 2.3 20 24-43 10-29 (80)
477 PF01297 TroA: Periplasmic sol 30.6 2.3E+02 0.005 26.1 7.8 43 104-146 187-231 (256)
478 cd01147 HemV-2 Metal binding p 30.6 81 0.0018 29.1 4.7 37 110-146 68-107 (262)
479 PLN02948 phosphoribosylaminoim 30.5 6.8E+02 0.015 26.6 12.4 36 5-45 20-55 (577)
480 PRK02842 light-independent pro 30.5 2.8E+02 0.0061 28.1 8.8 36 6-46 289-325 (427)
481 TIGR00640 acid_CoA_mut_C methy 30.3 1.5E+02 0.0033 24.3 5.6 40 7-46 2-41 (132)
482 PRK14092 2-amino-4-hydroxy-6-h 30.3 1.2E+02 0.0026 26.1 5.1 31 279-309 5-35 (163)
483 PF06180 CbiK: Cobalt chelatas 30.2 88 0.0019 29.2 4.7 39 282-320 2-43 (262)
484 cd01966 Nitrogenase_NifN_1 Nit 30.2 4.7E+02 0.01 26.4 10.3 24 117-143 361-384 (417)
485 PLN02293 adenine phosphoribosy 30.2 1.5E+02 0.0033 26.1 5.9 41 103-143 49-91 (187)
486 COG3140 Uncharacterized protei 29.9 1.5E+02 0.0032 20.0 4.2 31 454-488 15-45 (60)
487 PRK08322 acetolactate synthase 29.9 1.9E+02 0.0041 30.4 7.7 26 366-391 65-96 (547)
488 PRK02006 murD UDP-N-acetylmura 29.9 69 0.0015 33.2 4.4 38 1-43 1-38 (498)
489 PRK08334 translation initiatio 29.8 3.4E+02 0.0074 26.7 8.7 25 19-43 175-199 (356)
490 PRK08939 primosomal protein Dn 29.8 85 0.0019 30.1 4.7 47 7-53 156-202 (306)
491 PRK06079 enoyl-(acyl carrier p 29.7 87 0.0019 28.8 4.7 40 1-43 1-41 (252)
492 cd01017 AdcA Metal binding pro 29.7 4.3E+02 0.0094 24.8 9.5 41 105-145 209-251 (282)
493 PRK06276 acetolactate synthase 29.5 2.2E+02 0.0048 30.2 8.2 25 367-391 66-96 (586)
494 COG3640 CooC CO dehydrogenase 29.4 1.4E+02 0.003 27.4 5.5 46 8-53 1-47 (255)
495 PF02635 DrsE: DsrE/DsrF-like 29.4 1.7E+02 0.0036 23.0 5.8 43 8-50 1-49 (122)
496 PRK10037 cell division protein 29.3 93 0.002 28.7 4.8 36 8-43 2-38 (250)
497 TIGR00853 pts-lac PTS system, 29.2 1.4E+02 0.0031 22.8 5.0 38 6-43 2-39 (95)
498 TIGR01917 gly_red_sel_B glycin 29.2 1.1E+02 0.0025 30.5 5.3 48 95-142 55-112 (431)
499 PRK12439 NAD(P)H-dependent gly 29.2 54 0.0012 32.0 3.3 36 1-41 1-36 (341)
500 COG4635 HemG Flavodoxin [Energ 29.2 1E+02 0.0022 26.2 4.3 36 8-43 1-37 (175)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.9e-66 Score=518.29 Aligned_cols=477 Identities=41% Similarity=0.793 Sum_probs=359.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
.++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+..........+..++|+.+|+|...+++|++.+.
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 45689999999999999999999999999999999999998776665543211111224999999988665678776554
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhc--CCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCC
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFRE--QNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQP 162 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (490)
............+........+.+.++|++ .++|+||+|.+..|+..+|+.+|||.+.+++++.+....+..+....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 333332234444555555667778888775 468999999999999999999999999999998887765443322222
Q ss_pred CCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceE
Q 044012 163 FKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAW 242 (490)
Q Consensus 163 ~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~ 242 (490)
....+....+..+|+++....+..++++.. +........+...+....+.+.++++|||++||+.+++.+...++++++
T Consensus 166 ~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~-~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~ 244 (491)
T PLN02534 166 HLSVSSDSEPFVVPGMPQSIEITRAQLPGA-FVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVW 244 (491)
T ss_pred cccCCCCCceeecCCCCccccccHHHCChh-hcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEE
Confidence 111222234556888876555666667765 3221223333333333344567899999999999999999876767899
Q ss_pred EeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCC
Q 044012 243 HLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILK 322 (490)
Q Consensus 243 ~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 322 (490)
.|||+............++......+.++.+|||.+++++||||||||.....++++.+++.+|+.++++|||++...
T Consensus 245 ~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~-- 322 (491)
T PLN02534 245 CVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTG-- 322 (491)
T ss_pred EECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecC--
Confidence 999997532111110001111111235689999999889999999999999999999999999999999999999843
Q ss_pred CCCchhh-hccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHH
Q 044012 323 TDDDQEE-ESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEK 401 (490)
Q Consensus 323 ~~~~~~~-~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 401 (490)
....+. ...+|++|.++.. +.++++.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.||+.||+
T Consensus 323 -~~~~~~~~~~~p~gf~~~~~--~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~ 399 (491)
T PLN02534 323 -EKHSELEEWLVKENFEERIK--GRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEK 399 (491)
T ss_pred -ccccchhhhcCchhhHHhhc--cCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHH
Confidence 110011 1136789988876 779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccceeeccccccccccCCC--CccchhHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 044012 402 LVTQVLKFGLPVGNEIWKIWATQDS--PVINRGNIKNAICVVMDND-DQEAVKMRKKANHLKELAKKAVEEGGSSCNDLK 478 (490)
Q Consensus 402 rv~e~~G~G~~l~~~~~~~~~~~~~--~~~t~~~l~~~i~~~l~n~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 478 (490)
+++|.+|+|+.+....+..||...+ ..++.++|.++|+++|. + +++++++|+||++|++.+++|+++||||..+++
T Consensus 400 ~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~-~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~ 478 (491)
T PLN02534 400 LIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMD-DGGEEGERRRRRAQELGVMARKAMELGGSSHINLS 478 (491)
T ss_pred HHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9988999999885432222322111 14899999999999996 2 456789999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 044012 479 ALIEDIRLYK 488 (490)
Q Consensus 479 ~~~~~~~~~~ 488 (490)
+|+++|+..+
T Consensus 479 ~fv~~i~~~~ 488 (491)
T PLN02534 479 ILIQDVLKQQ 488 (491)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 2
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=8.4e-65 Score=513.65 Aligned_cols=471 Identities=47% Similarity=0.901 Sum_probs=346.7
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccc--cCCCceEEEEeeCCCCcCCCCCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDS--RLGREISLRILRFPSQEAGLPEGC 82 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~ 82 (490)
.+++||+|+|+|++||++|++.||+.|++|||+|||++++.+...+++...... ..+..+++..+++|..++++|.+.
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 456899999999999999999999999999999999999988876665421100 011235677777775545667665
Q ss_pred cCCCCCC------ChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHh
Q 044012 83 ENLMSTS------TPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHS 156 (490)
Q Consensus 83 ~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 156 (490)
+.....+ ...+...+......+.+.+.+++++.+||+||+|.++.|+..+|+.+|||.+.+++++.+.......
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~ 162 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYC 162 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHH
Confidence 4432111 1123333444445677788888888899999999999999999999999999999998877665554
Q ss_pred hhhcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhh
Q 044012 157 LEHHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRV 236 (490)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 236 (490)
.....+....+....+..+|+++..+.+....++.. .....+..++........+++.+++||+++||+++.+.+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~ 240 (482)
T PLN03007 163 IRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSF 240 (482)
T ss_pred HHhcccccccCCCCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhc
Confidence 432222111111112234677764333333333321 111123445555556677888999999999999888888765
Q ss_pred hCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEE
Q 044012 237 TGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWV 316 (490)
Q Consensus 237 ~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 316 (490)
.+..+++|||+............++.+.+..+.++.+|++..+++++|||||||+...+.+++.+++.+|+.++++|||+
T Consensus 241 ~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~ 320 (482)
T PLN03007 241 VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWV 320 (482)
T ss_pred cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 55679999998654321100001111112235678999999888999999999998888899999999999999999999
Q ss_pred EccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccc
Q 044012 317 VGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQ 396 (490)
Q Consensus 317 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ 396 (490)
++.. ....+....+|++|.++.. +.|+++.+|+||.+||+|+++++|||||||||+.||+++|||||++|+++||
T Consensus 321 ~~~~---~~~~~~~~~lp~~~~~r~~--~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ 395 (482)
T PLN03007 321 VRKN---ENQGEKEEWLPEGFEERTK--GKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQ 395 (482)
T ss_pred EecC---CcccchhhcCCHHHHHHhc--cCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhh
Confidence 9864 2110111238889999887 8899999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 044012 397 FNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCND 476 (490)
Q Consensus 397 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 476 (490)
+.||+++++.+++|+.+...... .-+.+.+++++|.++|+++|. ++++++||+||+++++.+++++++||+|..+
T Consensus 396 ~~na~~~~~~~~~G~~~~~~~~~---~~~~~~~~~~~l~~av~~~m~--~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~ 470 (482)
T PLN03007 396 FYNEKLVTQVLRTGVSVGAKKLV---KVKGDFISREKVEKAVREVIV--GEEAEERRLRAKKLAEMAKAAVEEGGSSFND 470 (482)
T ss_pred hhhHHHHHHhhcceeEecccccc---ccccCcccHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999886555666655311000 000126899999999999998 4567799999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 044012 477 LKALIEDIRLY 487 (490)
Q Consensus 477 ~~~~~~~~~~~ 487 (490)
+++|++++++-
T Consensus 471 l~~~v~~~~~~ 481 (482)
T PLN03007 471 LNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHhc
Confidence 99999999854
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.1e-64 Score=501.91 Aligned_cols=458 Identities=33% Similarity=0.598 Sum_probs=347.8
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
.+++||+++|+|++||++||+.||+.|+.+|+.|||++++.+...+...... ..+++++.+|+|.. .++|.+.++
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~----~~~i~~~~lp~P~~-~~lPdG~~~ 81 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSK----HPSIETLVLPFPSH-PSIPSGVEN 81 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhccc----CCCeeEEeCCCCCc-CCCCCCCcC
Confidence 4679999999999999999999999999999999999999887766554211 12588989887754 467777655
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhc--CCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCC
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFRE--QNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQP 162 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (490)
..... ...+..+..........+.+++++ .++++||+|.+..|+..+|+.+|||++.+++++...+.++.++....+
T Consensus 82 ~~~~~-~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 82 VKDLP-PSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred hhhcc-hhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 43322 122334445555666777777765 467999999999999999999999999999999999888777643222
Q ss_pred CCCCC-CCCce---eecCCCCCCcccCCCCCCCccccCC---CchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHh
Q 044012 163 FKNIV-SETQK---FIVPGLPDQVKLSRSQLPDIVKCKS---TGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRR 235 (490)
Q Consensus 163 ~~~~~-~~~~~---~~~p~l~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 235 (490)
....+ ..... ..+|+++. +..++++.+ ++.. ......+.........++++++|||++||+++++.+..
T Consensus 161 ~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 161 TKINPDDQNEILSFSKIPNCPK---YPWWQISSL-YRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred ccccccccccccccCCCCCCCC---cChHhCchh-hhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 11101 11111 13566653 555666654 3321 11222232333334567889999999999999999977
Q ss_pred hhC-CceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceE
Q 044012 236 VTG-KKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFI 314 (490)
Q Consensus 236 ~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 314 (490)
.++ ++++.|||+............++...+..++++.+||+.+++++||||||||+...+.+++.+++.+|++.+++||
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~fl 316 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFI 316 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEE
Confidence 655 6899999997542110000011111111245799999999889999999999999999999999999999999999
Q ss_pred EEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcc
Q 044012 315 WVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFA 394 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~ 394 (490)
|+++.. .+.......+|++|.++.. ..|+++.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.
T Consensus 317 w~~~~~---~~~~~~~~~lp~~~~~r~~--~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 391 (477)
T PLN02863 317 WCVKEP---VNEESDYSNIPSGFEDRVA--GRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAA 391 (477)
T ss_pred EEECCC---cccccchhhCCHHHHHHhc--cCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccc
Confidence 999854 2110111127888988887 78999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 044012 395 EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSC 474 (490)
Q Consensus 395 DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 474 (490)
||+.||+++++.+|+|+.+... .++.++.+++.++|++++.++ ++||+||+++++.+++|+++||+|.
T Consensus 392 DQ~~na~~v~~~~gvG~~~~~~--------~~~~~~~~~v~~~v~~~m~~~----~~~r~~a~~l~e~a~~Av~~gGSS~ 459 (477)
T PLN02863 392 DQFVNASLLVDELKVAVRVCEG--------ADTVPDSDELARVFMESVSEN----QVERERAKELRRAALDAIKERGSSV 459 (477)
T ss_pred cchhhHHHHHHhhceeEEeccC--------CCCCcCHHHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHHhccCCcHH
Confidence 9999999976678999999542 012568999999999998423 6999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 044012 475 NDLKALIEDIRLYKH 489 (490)
Q Consensus 475 ~~~~~~~~~~~~~~~ 489 (490)
.++++|+++++.++.
T Consensus 460 ~~l~~~v~~i~~~~~ 474 (477)
T PLN02863 460 KDLDGFVKHVVELGL 474 (477)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988764
No 4
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.9e-63 Score=493.05 Aligned_cols=442 Identities=27% Similarity=0.456 Sum_probs=334.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHH-HCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFA-ANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
.+.||+++|++++||++|++.||+.|+ ++|+.|||++++.....+...... ..+++++.+|+|.. .+++....
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~----~~~i~~~~lp~p~~-~glp~~~~- 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN----STGVDIVGLPSPDI-SGLVDPSA- 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc----CCCceEEECCCccc-cCCCCCCc-
Confidence 457999999999999999999999998 789999999999776554332111 12588988886643 23431111
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhc--CCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCC
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFRE--QNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQP 162 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (490)
.....+........+.+.+++++ .+|++||+|.+..|+..+|+.+|||++.+++++...+.++.+......
T Consensus 78 -------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 150 (481)
T PLN02992 78 -------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDK 150 (481)
T ss_pred -------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcc
Confidence 11112223333455667777765 378999999999999999999999999999999888766555432111
Q ss_pred CCCCC--CCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhh--h-
Q 044012 163 FKNIV--SETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRV--T- 237 (490)
Q Consensus 163 ~~~~~--~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~--~- 237 (490)
....+ ....+..+|+++. +...+++..+..........+........+++++++|||.+||+.+++.+... .
T Consensus 151 ~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~ 227 (481)
T PLN02992 151 DIKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLG 227 (481)
T ss_pred ccccccccCCCCcccCCCCc---cCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccc
Confidence 10101 1112345777764 44455664312222222334444445667889999999999999999888642 1
Q ss_pred ---CCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceE
Q 044012 238 ---GKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFI 314 (490)
Q Consensus 238 ---~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 314 (490)
.+.++.|||+...... ...++++.+|||.+++++||||||||...++.+++.+++.+|++++++||
T Consensus 228 ~~~~~~v~~VGPl~~~~~~-----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~fl 296 (481)
T PLN02992 228 RVARVPVYPIGPLCRPIQS-----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFV 296 (481)
T ss_pred cccCCceEEecCccCCcCC-----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEE
Confidence 2579999999753110 01245689999998889999999999999999999999999999999999
Q ss_pred EEEccCCCCC---------C---chhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHH
Q 044012 315 WVVGKILKTD---------D---DQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVS 382 (490)
Q Consensus 315 ~~~~~~~~~~---------~---~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~ 382 (490)
|++....+.. . ..+....+|++|.+++. ..++++.+|+||.+||+|+++++|||||||||+.||++
T Consensus 297 W~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~--~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~ 374 (481)
T PLN02992 297 WVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTH--DRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVV 374 (481)
T ss_pred EEEeCCcccccccccccCcccccccchhhhCCHHHHHHhc--CCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHH
Confidence 9996421000 0 00112348899999998 88999999999999999999999999999999999999
Q ss_pred hCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 044012 383 AGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKEL 462 (490)
Q Consensus 383 ~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~ 462 (490)
+|||||++|+++||+.||+++++++|+|+.++.. ++.++.++|.++|+++|. +++++.||+++++++++
T Consensus 375 ~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~---------~~~~~~~~l~~av~~vm~--~~~g~~~r~~a~~~~~~ 443 (481)
T PLN02992 375 GGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP---------KEVISRSKIEALVRKVMV--EEEGEEMRRKVKKLRDT 443 (481)
T ss_pred cCCCEEecCccchhHHHHHHHHHHhCeeEEecCC---------CCcccHHHHHHHHHHHhc--CCchHHHHHHHHHHHHH
Confidence 9999999999999999999995599999999753 015899999999999998 45678999999999999
Q ss_pred HHHHHh--cCCCcHHHHHHHHHHHHhh
Q 044012 463 AKKAVE--EGGSSCNDLKALIEDIRLY 487 (490)
Q Consensus 463 ~~~~~~--~~g~~~~~~~~~~~~~~~~ 487 (490)
+++|++ +||||..++++|++++++.
T Consensus 444 a~~Av~~~~GGSS~~~l~~~v~~~~~~ 470 (481)
T PLN02992 444 AEMSLSIDGGGVAHESLCRVTKECQRF 470 (481)
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHHH
Confidence 999994 5999999999999998763
No 5
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.7e-63 Score=491.79 Aligned_cols=437 Identities=24% Similarity=0.409 Sum_probs=331.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
+++||+++|++++||++|++.||+.|+++||+|||++++.+...+.+.. ..+..+++..++++.. ++++.+.+..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~-dgLp~g~~~~ 77 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPV-NGLPAGAETT 77 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCc-cCCCCCcccc
Confidence 3589999999999999999999999999999999999998777665431 0122577887776532 3566654422
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCC
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKN 165 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (490)
.... ......+......+.+.+.+++++.++|+||+| ++.|+..+|+.+|||++.+++++...+. +.+... ..
T Consensus 78 ~~l~-~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~ 150 (442)
T PLN02208 78 SDIP-ISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GK 150 (442)
T ss_pred cchh-HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----cc
Confidence 1110 112223444456778888888888899999999 6779999999999999999999887653 322210 00
Q ss_pred CCCCCceeecCCCCCC-cccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceEEe
Q 044012 166 IVSETQKFIVPGLPDQ-VKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWHL 244 (490)
Q Consensus 166 ~~~~~~~~~~p~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~v 244 (490)
. ...+|+++.. +.+...+++.+ ......+..+...+.....+++++++|||.+||+.+++.+.+.++++++.|
T Consensus 151 ~-----~~~~pglp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~v 224 (442)
T PLN02208 151 L-----GVPPPGYPSSKVLFRENDAHAL-ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLT 224 (442)
T ss_pred c-----CCCCCCCCCcccccCHHHcCcc-cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEE
Confidence 0 1124666542 22344444432 111111233333343456688999999999999999999988777899999
Q ss_pred ccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCC
Q 044012 245 GPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTD 324 (490)
Q Consensus 245 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 324 (490)
||++..... ...++.++.+|||.+++++||||||||...++.+++.+++.+++..+.+++|++... .
T Consensus 225 Gpl~~~~~~----------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~---~ 291 (442)
T PLN02208 225 GPMFPEPDT----------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPP---R 291 (442)
T ss_pred eecccCcCC----------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCC---C
Confidence 999754210 012467899999999889999999999999999999999988888888888888643 1
Q ss_pred CchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHH
Q 044012 325 DDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVT 404 (490)
Q Consensus 325 ~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~ 404 (490)
...+....+|++|.+++. ..|+++.+|+||.+||+|+++++|||||||||+.||+++|||||++|+++||+.||++++
T Consensus 292 ~~~~~~~~lp~~f~~r~~--~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~ 369 (442)
T PLN02208 292 GSSTVQEGLPEGFEERVK--GRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMT 369 (442)
T ss_pred cccchhhhCCHHHHHHHh--cCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHH
Confidence 100111238999999987 789999999999999999999999999999999999999999999999999999999986
Q ss_pred HhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 044012 405 QVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDI 484 (490)
Q Consensus 405 e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 484 (490)
+.+|+|+.++..+ ++.+++++|.++|+++++|+.++++.+|++|+++++.+. ++|+|..++++|++++
T Consensus 370 ~~~g~gv~~~~~~--------~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 370 EEFEVSVEVSREK--------TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEEL 437 (442)
T ss_pred HHhceeEEecccc--------CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHH
Confidence 5599999997540 114999999999999998332567899999999999985 4789999999999999
Q ss_pred Hhh
Q 044012 485 RLY 487 (490)
Q Consensus 485 ~~~ 487 (490)
+++
T Consensus 438 ~~~ 440 (442)
T PLN02208 438 QEY 440 (442)
T ss_pred HHh
Confidence 764
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.7e-63 Score=491.08 Aligned_cols=437 Identities=27% Similarity=0.434 Sum_probs=325.2
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
|+...++.||+++|++++||++||+.||+.|+.+|+.|||++++.+.. ... . ...+++|..+|. ++|+
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~--~~~--~---~~~~i~~~~ip~-----glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYF--SPS--D---DFTDFQFVTIPE-----SLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccc--ccc--c---CCCCeEEEeCCC-----CCCc
Confidence 787788899999999999999999999999999999999999986531 110 0 012588888762 4454
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhc------CCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHH
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFRE------QNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVS 154 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 154 (490)
+... ......++..+. ......+.+.|++ .++++||+|.+..|+..+|+.+|||.+.+++++...+.++
T Consensus 69 ~~~~--~~~~~~~~~~~~---~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~ 143 (451)
T PLN02410 69 SDFK--NLGPIEFLHKLN---KECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCR 143 (451)
T ss_pred cccc--ccCHHHHHHHHH---HHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHH
Confidence 3111 111112222121 2233334444432 2569999999999999999999999999999999887776
Q ss_pred HhhhhcC------CCCCCCCCCceeecCCCCCCcccCCCCCCCccccCC-CchhhHHHHHHHhhhcccEEEEcchhhcCh
Q 044012 155 HSLEHHQ------PFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKS-TGFSAMFDELNNAERKSFGVLMNSFYELEP 227 (490)
Q Consensus 155 ~~~~~~~------~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 227 (490)
.++.... +..... ......+|+++. +..++++.. .+.. ..+...+... ....+++++++|||++||+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~-~~~~~~iPg~~~---~~~~dlp~~-~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~ 217 (451)
T PLN02410 144 SVFDKLYANNVLAPLKEPK-GQQNELVPEFHP---LRCKDFPVS-HWASLESIMELYRNT-VDKRTASSVIINTASCLES 217 (451)
T ss_pred HHHHHHHhccCCCCccccc-cCccccCCCCCC---CChHHCcch-hcCCcHHHHHHHHHH-hhcccCCEEEEeChHHhhH
Confidence 6542211 111100 112234677654 344455543 2211 1122222222 2346788999999999999
Q ss_pred HHHHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHH
Q 044012 228 AYADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALK 307 (490)
Q Consensus 228 ~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~ 307 (490)
++++.+....+++++.|||++...... ...+....++.+|||..++++||||||||....+.+++.+++.+|+
T Consensus 218 ~~~~~l~~~~~~~v~~vGpl~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe 290 (451)
T PLN02410 218 SSLSRLQQQLQIPVYPIGPLHLVASAP-------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLD 290 (451)
T ss_pred HHHHHHHhccCCCEEEecccccccCCC-------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHH
Confidence 999999776667899999997542110 0111123457899999988999999999999999999999999999
Q ss_pred HcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcE
Q 044012 308 ESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPM 387 (490)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~ 387 (490)
..+++|||++.... .+..+....+|++|.+++ ++|..+++|+||.+||+|+++++|||||||||+.||+++||||
T Consensus 291 ~s~~~FlWv~r~~~--~~~~~~~~~lp~~f~er~---~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~ 365 (451)
T PLN02410 291 SSNQQFLWVIRPGS--VRGSEWIESLPKEFSKII---SGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPM 365 (451)
T ss_pred hcCCCeEEEEccCc--ccccchhhcCChhHHHhc---cCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCE
Confidence 99999999997430 010111123788999887 4567888999999999999999999999999999999999999
Q ss_pred eeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Q 044012 388 VTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAV 467 (490)
Q Consensus 388 l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~ 467 (490)
|++|++.||+.||+++++.+|+|+.+. . .+++++|.++|+++|. ++++++||++|+++++++++|+
T Consensus 366 l~~P~~~DQ~~na~~~~~~~~~G~~~~-~-----------~~~~~~v~~av~~lm~--~~~~~~~r~~a~~l~~~~~~a~ 431 (451)
T PLN02410 366 ICKPFSSDQKVNARYLECVWKIGIQVE-G-----------DLDRGAVERAVKRLMV--EEEGEEMRKRAISLKEQLRASV 431 (451)
T ss_pred EeccccccCHHHHHHHHHHhCeeEEeC-C-----------cccHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999964559999997 3 6899999999999998 4446799999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHh
Q 044012 468 EEGGSSCNDLKALIEDIRL 486 (490)
Q Consensus 468 ~~~g~~~~~~~~~~~~~~~ 486 (490)
++||+|..++++|++.++.
T Consensus 432 ~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 432 ISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred cCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999863
No 7
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4e-62 Score=487.91 Aligned_cols=455 Identities=26% Similarity=0.488 Sum_probs=335.0
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhc--cc--ccCC-CceEEEEeeCCCCc
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAID--RD--SRLG-REISLRILRFPSQE 75 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~--~~--~~~~-~~~~~~~i~~~~~~ 75 (490)
|+++.-..||+++|+|++||++||+.||+.|+.+|..|||++++.+...+..... +. ...+ ..++|..+|
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----
Confidence 7888778999999999999999999999999999999999999976665542110 00 0011 124444433
Q ss_pred CCCCCCccCCCCCCChhhHhhHHHHHH-hhHHHHHHHhhc----CCC-cEEEEcCCCcchHHHHHHhCCCeEEEecccHH
Q 044012 76 AGLPEGCENLMSTSTPETTKKLFPALE-LLRPEIEKLFRE----QNP-NCIVSDNLFPWTVSIAEELGIPRLAFTGSGFF 149 (490)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~----~~p-D~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 149 (490)
+++|.+.+.. . ... .++.... ...+.+.++|++ .+| ++||+|.+..|+..+|+.+|||.+.+++++..
T Consensus 76 dglp~~~~~~---~--~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~ 149 (480)
T PLN02555 76 DGWAEDDPRR---Q--DLD-LYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCA 149 (480)
T ss_pred CCCCCCcccc---c--CHH-HHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHH
Confidence 3555543321 1 111 2222222 334455555543 244 99999999999999999999999999999999
Q ss_pred HHHHHHhhhhcC-CCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCC---chhhHHHHHHHhhhcccEEEEcchhhc
Q 044012 150 NNCVSHSLEHHQ-PFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKST---GFSAMFDELNNAERKSFGVLMNSFYEL 225 (490)
Q Consensus 150 ~~~~~~~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~l 225 (490)
.+.++.++.... +.........+..+|+++. +..++++.+ ++... ...+.+........+++++++|||++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~-~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eL 225 (480)
T PLN02555 150 CFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSF-LHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQEL 225 (480)
T ss_pred HHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCccc-ccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHH
Confidence 888777663211 1111111123345888865 566777766 43211 122233333445677889999999999
Q ss_pred ChHHHHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHH
Q 044012 226 EPAYADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAA 305 (490)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a 305 (490)
|+++++.+.... + ++.|||+......... ..+...+..++++.+||+.+++++||||||||+...+.+++.+++.+
T Consensus 226 E~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~ 301 (480)
T PLN02555 226 EKEIIDYMSKLC-P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYG 301 (480)
T ss_pred hHHHHHHHhhCC-C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHH
Confidence 999998886643 3 9999999754221100 00111122356799999999888999999999999999999999999
Q ss_pred HHHcCCceEEEEccCCCCCCchhh-hccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhC
Q 044012 306 LKESGHSFIWVVGKILKTDDDQEE-ESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAG 384 (490)
Q Consensus 306 l~~~~~~~i~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~G 384 (490)
++..+++|||++... ....+. ...+|++|.++. ++|+.+++|+||.+||+|+++++|||||||||+.||+++|
T Consensus 302 l~~~~~~flW~~~~~---~~~~~~~~~~lp~~~~~~~---~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~G 375 (480)
T PLN02555 302 VLNSGVSFLWVMRPP---HKDSGVEPHVLPEEFLEKA---GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSG 375 (480)
T ss_pred HHhcCCeEEEEEecC---cccccchhhcCChhhhhhc---CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcC
Confidence 999999999998742 110001 123777777665 4678888999999999999999999999999999999999
Q ss_pred CcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 385 VPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 385 vP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
||||++|+++||+.||+++++.+|+|+.+.... ..++.++.++|.++|+++|. +++++++|+||++|++.++
T Consensus 376 VP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~------~~~~~v~~~~v~~~v~~vm~--~~~g~~~r~ra~~l~~~a~ 447 (480)
T PLN02555 376 VPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGE------AENKLITREEVAECLLEATV--GEKAAELKQNALKWKEEAE 447 (480)
T ss_pred CCEEeCCCccccHHHHHHHHHHhCceEEccCCc------cccCcCcHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHH
Confidence 999999999999999999975569999995310 00126899999999999998 5677899999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhhc
Q 044012 465 KAVEEGGSSCNDLKALIEDIRLYK 488 (490)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~~~~~~~ 488 (490)
+|+++||+|..++++||++++...
T Consensus 448 ~A~~egGSS~~~l~~~v~~i~~~~ 471 (480)
T PLN02555 448 AAVAEGGSSDRNFQEFVDKLVRKS 471 (480)
T ss_pred HHhcCCCcHHHHHHHHHHHHHhcc
Confidence 999999999999999999998764
No 8
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.6e-61 Score=477.84 Aligned_cols=439 Identities=24% Similarity=0.421 Sum_probs=333.3
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
.++||+++|++++||++|++.||+.|+.+|+.|||++++.....+... . . ...++++..+++|.. +++|.+.+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~-~--~~~~~~v~~~~~p~~-~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N-L--FPHNIVFRSVTVPHV-DGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c-c--CCCCceEEEEECCCc-CCCCCccccc
Confidence 458999999999999999999999999999999999999876555442 1 0 011334445554432 3667665543
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCC
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKN 165 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (490)
.... ......+..+.....+.+.++|++.++|+||+| +..|+..+|+.+|||.+.+++++...+.++.. +...
T Consensus 79 ~~~~-~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-----~~~~ 151 (453)
T PLN02764 79 SEIP-VTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-----PGGE 151 (453)
T ss_pred ccCC-hhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-----cccc
Confidence 3332 122334455555667888888888789999999 57799999999999999999999887766542 1000
Q ss_pred CCCCCceeecCCCCCC-cccCCCCCCCcccc--CCC---chhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCC
Q 044012 166 IVSETQKFIVPGLPDQ-VKLSRSQLPDIVKC--KST---GFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGK 239 (490)
Q Consensus 166 ~~~~~~~~~~p~l~~~-~~~~~~~l~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~ 239 (490)
. ...+|+++.. +.+..++++.+ .. ... ....+...+....++++++++|||++||+++++++....++
T Consensus 152 ~-----~~~~pglp~~~v~l~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~ 225 (453)
T PLN02764 152 L-----GVPPPGYPSSKVLLRKQDAYTM-KNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRK 225 (453)
T ss_pred C-----CCCCCCCCCCcccCcHhhCcch-hhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCC
Confidence 1 0123666531 12333334332 11 100 13334444445567788999999999999999999775456
Q ss_pred ceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEcc
Q 044012 240 KAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGK 319 (490)
Q Consensus 240 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 319 (490)
+++.|||+....... ...+.++.+|||.+++++||||||||...++.+++.++..+|+..+.+|+|++..
T Consensus 226 ~v~~VGPL~~~~~~~----------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~ 295 (453)
T PLN02764 226 KVLLTGPVFPEPDKT----------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKP 295 (453)
T ss_pred cEEEeccCccCcccc----------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 899999996532100 0124679999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccch
Q 044012 320 ILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNN 399 (490)
Q Consensus 320 ~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~n 399 (490)
. ....+....+|++|.++.. ..++++.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.||+.|
T Consensus 296 ~---~~~~~~~~~lp~~f~~r~~--grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~n 370 (453)
T PLN02764 296 P---RGSSTIQEALPEGFEERVK--GRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLN 370 (453)
T ss_pred C---CCCcchhhhCCcchHhhhc--cCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHH
Confidence 3 1100112348999999987 7789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 044012 400 EKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKA 479 (490)
Q Consensus 400 a~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 479 (490)
|+++++.+|+|+.+.... ++.++.++|.++|+++|+|.+++++.+|++++++++.++ ++|+|..++++
T Consensus 371 a~~l~~~~g~gv~~~~~~--------~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~ 438 (453)
T PLN02764 371 TRLLSDELKVSVEVAREE--------TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDN 438 (453)
T ss_pred HHHHHHHhceEEEecccc--------CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHH
Confidence 999964689998875320 015899999999999998322567889999999999996 78999999999
Q ss_pred HHHHHHhhcC
Q 044012 480 LIEDIRLYKH 489 (490)
Q Consensus 480 ~~~~~~~~~~ 489 (490)
|++++..+..
T Consensus 439 lv~~~~~~~~ 448 (453)
T PLN02764 439 FIESLQDLVS 448 (453)
T ss_pred HHHHHHHhcc
Confidence 9999988754
No 9
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.7e-61 Score=481.05 Aligned_cols=450 Identities=24% Similarity=0.461 Sum_probs=328.6
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCC--CeEEEEeCCcch-hhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANG--IQVTIILTTMNA-RRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGC 82 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rG--h~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (490)
++.||+++|++++||++|++.||+.|+.+| ..|||++++... ..+....+.......+++|+.+|.... .+...
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~ 78 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTLG 78 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCccc
Confidence 457999999999999999999999999998 999999998764 333322221111112599999984221 11101
Q ss_pred cCCCCCCChhhHhhHHHHHHh----hHHHHHHHhhcC----CC-cEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHH
Q 044012 83 ENLMSTSTPETTKKLFPALEL----LRPEIEKLFREQ----NP-NCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCV 153 (490)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~----~p-D~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 153 (490)
. . . +....+...... +.+.+.+++++. +| ++||+|.+..|+..+|+.+|||.+.+++++...+.+
T Consensus 79 -~--~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~ 152 (468)
T PLN02207 79 -G--T-Q--SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAM 152 (468)
T ss_pred -c--c-c--CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHH
Confidence 1 0 1 111122222222 244455555532 34 899999999999999999999999999999888777
Q ss_pred HHhhhhcC-CCCCC--CCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHH
Q 044012 154 SHSLEHHQ-PFKNI--VSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYA 230 (490)
Q Consensus 154 ~~~~~~~~-~~~~~--~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 230 (490)
+.+..... +.... +....+..+|+++.. +..++++.+ +.....+. .+.......++++.+++||+++||++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~--l~~~dlp~~-~~~~~~~~-~~~~~~~~~~~~~~vlvNtf~~LE~~~~ 228 (468)
T PLN02207 153 MQYLADRHSKDTSVFVRNSEEMLSIPGFVNP--VPANVLPSA-LFVEDGYD-AYVKLAILFTKANGILVNSSFDIEPYSV 228 (468)
T ss_pred HHHhhhccccccccCcCCCCCeEECCCCCCC--CChHHCcch-hcCCccHH-HHHHHHHhcccCCEEEEEchHHHhHHHH
Confidence 66553221 11111 111133567887322 566777765 43222233 3334444677889999999999999988
Q ss_pred HHHHh-hhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc
Q 044012 231 DHFRR-VTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES 309 (490)
Q Consensus 231 ~~~~~-~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 309 (490)
+.+.. +..++++.|||++........ .... ..++++.+||+.+++++||||||||...++.+++.+++.+|+++
T Consensus 229 ~~~~~~~~~p~v~~VGPl~~~~~~~~~----~~~~-~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~ 303 (468)
T PLN02207 229 NHFLDEQNYPSVYAVGPIFDLKAQPHP----EQDL-ARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELC 303 (468)
T ss_pred HHHHhccCCCcEEEecCCcccccCCCC----cccc-chhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHC
Confidence 88854 334789999999764321100 0000 12367999999998889999999999999999999999999999
Q ss_pred CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEee
Q 044012 310 GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVT 389 (490)
Q Consensus 310 ~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 389 (490)
+++|||++... .. +...++|++|.++. ++|..+++|+||.+||+|+++++|||||||||+.||+++|||||+
T Consensus 304 ~~~flW~~r~~---~~--~~~~~lp~~f~er~---~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~ 375 (468)
T PLN02207 304 QYRFLWSLRTE---EV--TNDDLLPEGFLDRV---SGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVT 375 (468)
T ss_pred CCcEEEEEeCC---Cc--cccccCCHHHHhhc---CCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEe
Confidence 99999999853 11 11224888888876 456788899999999999999999999999999999999999999
Q ss_pred ccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc
Q 044012 390 WPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEE 469 (490)
Q Consensus 390 ~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~ 469 (490)
+|+++||+.||+++++.+|+|+.+..+.. +. .++.++.++|.++|+++|. + ++++||+||+++++.+++|+++
T Consensus 376 ~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~--~~--~~~~v~~e~i~~av~~vm~--~-~~~~~r~~a~~l~~~a~~A~~~ 448 (468)
T PLN02207 376 WPMYAEQQLNAFLMVKELKLAVELKLDYR--VH--SDEIVNANEIETAIRCVMN--K-DNNVVRKRVMDISQMIQRATKN 448 (468)
T ss_pred cCccccchhhHHHHHHHhCceEEEecccc--cc--cCCcccHHHHHHHHHHHHh--c-chHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999988655999997742100 00 0124699999999999996 2 2469999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhc
Q 044012 470 GGSSCNDLKALIEDIRLYK 488 (490)
Q Consensus 470 ~g~~~~~~~~~~~~~~~~~ 488 (490)
||||..++++|+++++.-+
T Consensus 449 GGSS~~~l~~~v~~~~~~~ 467 (468)
T PLN02207 449 GGSSFAAIEKFIHDVIGIK 467 (468)
T ss_pred CCcHHHHHHHHHHHHHhcc
Confidence 9999999999999998755
No 10
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-61 Score=484.53 Aligned_cols=443 Identities=28% Similarity=0.499 Sum_probs=324.1
Q ss_pred CCCC-CCcceEEEEcCCCCCChHHHHHHHHH--HHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCC
Q 044012 1 MVSE-NQKLHVMFLPYIAPGHMVPMVDMARL--FAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAG 77 (490)
Q Consensus 1 m~~~-~~~~~Il~~~~~~~GHi~p~l~LA~~--L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 77 (490)
|+.. ..+.||+|+|+|++||++|++.||+. |++||+.|||++++.+.+.+... .. ....+++..+| ++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~~---~~~~~~~~~~~-----~g 71 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-EK---PRRPVDLVFFS-----DG 71 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-cC---CCCceEEEECC-----CC
Confidence 4443 45689999999999999999999999 56999999999999887665432 10 01235555443 24
Q ss_pred CCCCccCCCCCCChhhHhhHHHHH-HhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHh
Q 044012 78 LPEGCENLMSTSTPETTKKLFPAL-ELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHS 156 (490)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 156 (490)
+|++.+. ... .+.... +...+.+.+++++.+||+||+|.+..|+..+|+.+|||.+.+++.+...+..+.+
T Consensus 72 lp~~~~~-------~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~ 143 (456)
T PLN02210 72 LPKDDPR-------APE-TLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYR 143 (456)
T ss_pred CCCCccc-------CHH-HHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHh
Confidence 5544311 111 122222 2445667777877889999999999999999999999999999998887766665
Q ss_pred hhhc-CCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCc--hhhHHHHHHHhhhcccEEEEcchhhcChHHHHHH
Q 044012 157 LEHH-QPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTG--FSAMFDELNNAERKSFGVLMNSFYELEPAYADHF 233 (490)
Q Consensus 157 ~~~~-~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 233 (490)
.... .+.....+...+..+|+++. +..++++.. ++.... +...+.........++.+++|||.+||+++++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l 219 (456)
T PLN02210 144 YYMKTNSFPDLEDLNQTVELPALPL---LEVRDLPSF-MLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESM 219 (456)
T ss_pred hhhccCCCCcccccCCeeeCCCCCC---CChhhCChh-hhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHH
Confidence 4221 11111111112244677653 444556654 322211 2233334444556778999999999999999888
Q ss_pred HhhhCCceEEeccccCCCC--CCcchhccCC--CCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc
Q 044012 234 RRVTGKKAWHLGPVSLYNR--DVDDKAERGD--KSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES 309 (490)
Q Consensus 234 ~~~~~~~~~~vGpl~~~~~--~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 309 (490)
.. . +++++|||++.... ........+. ..+..+.++.+|++.++++++|||||||....+.+++.+++.+|+..
T Consensus 220 ~~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~ 297 (456)
T PLN02210 220 AD-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNR 297 (456)
T ss_pred hh-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhC
Confidence 66 3 57999999975211 0000000010 01223566889999988899999999999989999999999999999
Q ss_pred CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEee
Q 044012 310 GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVT 389 (490)
Q Consensus 310 ~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 389 (490)
+++|||+++.. ... ..++.|.++.. +++..+++|+||.+||+|+++++|||||||||+.|++++|||||+
T Consensus 298 ~~~flw~~~~~---~~~-----~~~~~~~~~~~--~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~ 367 (456)
T PLN02210 298 GVPFLWVIRPK---EKA-----QNVQVLQEMVK--EGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVA 367 (456)
T ss_pred CCCEEEEEeCC---ccc-----cchhhHHhhcc--CCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEe
Confidence 99999999754 110 02234555442 245577899999999999999999999999999999999999999
Q ss_pred ccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc
Q 044012 390 WPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEE 469 (490)
Q Consensus 390 ~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~ 469 (490)
+|+++||+.||+++++.+|+|+.+...+ .++.++.++|.++|+++|. ++++++||+||++|++.+++|+++
T Consensus 368 ~P~~~DQ~~na~~~~~~~g~G~~l~~~~-------~~~~~~~~~l~~av~~~m~--~~~g~~~r~~a~~l~~~a~~Av~~ 438 (456)
T PLN02210 368 YPSWTDQPIDARLLVDVFGIGVRMRNDA-------VDGELKVEEVERCIEAVTE--GPAAADIRRRAAELKHVARLALAP 438 (456)
T ss_pred cccccccHHHHHHHHHHhCeEEEEeccc-------cCCcCCHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999963499999996430 0126899999999999998 556778999999999999999999
Q ss_pred CCCcHHHHHHHHHHHH
Q 044012 470 GGSSCNDLKALIEDIR 485 (490)
Q Consensus 470 ~g~~~~~~~~~~~~~~ 485 (490)
||||..++++|+++++
T Consensus 439 gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 439 GGSSARNLDLFISDIT 454 (456)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 9999999999999986
No 11
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.3e-61 Score=482.50 Aligned_cols=453 Identities=27% Similarity=0.455 Sum_probs=332.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
+.||+++|++++||++||+.||+.|+.||+.|||++++.+...+...... ...+++++.+|+|.. +++|.+.++..
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~-dglp~~~~~~~ 81 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSV-PGLPSSAESST 81 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCcc-CCCCCCccccc
Confidence 47999999999999999999999999999999999999876655532111 112589999998754 46676544322
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCCC
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKNI 166 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (490)
.... .....+........+.+.+++++.++++||+|.+..|+..+|+.+|||.+.+++++...+.++.+..........
T Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~ 160 (472)
T PLN02670 82 DVPY-TKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDL 160 (472)
T ss_pred ccch-hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccC
Confidence 2210 111223344456677788888877899999999999999999999999999999998877665433211111111
Q ss_pred CCCCcee-ecCCCCC---CcccCCCCCCCccccCCC---chhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCC
Q 044012 167 VSETQKF-IVPGLPD---QVKLSRSQLPDIVKCKST---GFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGK 239 (490)
Q Consensus 167 ~~~~~~~-~~p~l~~---~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~ 239 (490)
+...... .+|++.+ .+.+..++++.+ +.... .....+........+++++++|||++||+.+++.....+++
T Consensus 161 ~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~-~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~ 239 (472)
T PLN02670 161 RSTAEDFTVVPPWVPFESNIVFRYHEVTKY-VEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRK 239 (472)
T ss_pred CCccccccCCCCcCCCCccccccHHHhhHH-HhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCC
Confidence 1111111 2444322 112344456654 32111 11222223334456788999999999999999999776567
Q ss_pred ceEEeccccCCCCCCcchhccCCCCc-cCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEc
Q 044012 240 KAWHLGPVSLYNRDVDDKAERGDKSC-VSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVG 318 (490)
Q Consensus 240 ~~~~vGpl~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 318 (490)
+++.|||+......... ..... ....++.+|||.+++++||||||||+..++.+++.+++.+|++++++|||++.
T Consensus 240 ~v~~VGPl~~~~~~~~~----~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r 315 (472)
T PLN02670 240 PIIPIGFLPPVIEDDEE----DDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLR 315 (472)
T ss_pred CeEEEecCCcccccccc----ccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 89999999653110000 00000 01256899999998899999999999999999999999999999999999998
Q ss_pred cCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccc
Q 044012 319 KILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFN 398 (490)
Q Consensus 319 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~ 398 (490)
... ....+....+|++|.+++. ..++++.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.||+.
T Consensus 316 ~~~--~~~~~~~~~lp~~f~~~~~--~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~ 391 (472)
T PLN02670 316 NEP--GTTQNALEMLPDGFEERVK--GRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGL 391 (472)
T ss_pred CCc--ccccchhhcCChHHHHhcc--CCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHH
Confidence 530 1101211238999999887 677988999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 044012 399 NEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLK 478 (490)
Q Consensus 399 na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 478 (490)
||+++ +++|+|+.+...+ .++.++.++|.++|+++|. ++++++||+||+++++.++ ..+.....++
T Consensus 392 Na~~v-~~~g~Gv~l~~~~-------~~~~~~~e~i~~av~~vm~--~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~ 457 (472)
T PLN02670 392 NTRLL-HGKKLGLEVPRDE-------RDGSFTSDSVAESVRLAMV--DDAGEEIRDKAKEMRNLFG----DMDRNNRYVD 457 (472)
T ss_pred HHHHH-HHcCeeEEeeccc-------cCCcCcHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHh----CcchhHHHHH
Confidence 99999 5999999996530 0125899999999999998 4556799999999999998 4455567788
Q ss_pred HHHHHHHhh
Q 044012 479 ALIEDIRLY 487 (490)
Q Consensus 479 ~~~~~~~~~ 487 (490)
+|+..|+..
T Consensus 458 ~~~~~l~~~ 466 (472)
T PLN02670 458 ELVHYLREN 466 (472)
T ss_pred HHHHHHHHh
Confidence 888887764
No 12
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3e-61 Score=485.00 Aligned_cols=450 Identities=28% Similarity=0.469 Sum_probs=334.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCC----CeEEEEeCCcchh----hhhhhhcccccCCCceEEEEeeCCCCcCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANG----IQVTIILTTMNAR----RFQNAIDRDSRLGREISLRILRFPSQEAG 77 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rG----h~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 77 (490)
.+.||+++|++++||++||+.||+.|+.+| +.|||++++.... .+..........+.+++|+.+|++.
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---- 77 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE---- 77 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC----
Confidence 467999999999999999999999999997 7999999876422 2333221111112258888887542
Q ss_pred CCCCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcC--CCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHH
Q 044012 78 LPEGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQ--NPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSH 155 (490)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 155 (490)
.+.+.+.. . ..+........+.+.++|++. ++++||+|.+..|+..+|+.+|||.+.+++++...+.++.
T Consensus 78 ~p~~~e~~------~--~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~ 149 (480)
T PLN00164 78 PPTDAAGV------E--EFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALML 149 (480)
T ss_pred CCCccccH------H--HHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHh
Confidence 22222110 1 112223335566677777664 5699999999999999999999999999999998887777
Q ss_pred hhhhcCCC--CCCCCCCceeecCCCCCCcccCCCCCCCccccCCC-chhhHHHHHHHhhhcccEEEEcchhhcChHHHHH
Q 044012 156 SLEHHQPF--KNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKST-GFSAMFDELNNAERKSFGVLMNSFYELEPAYADH 232 (490)
Q Consensus 156 ~~~~~~~~--~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 232 (490)
++...... ...+....+..+|+++. +...+++.. ++... .....+........+++++++|||++||+.+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~-~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 150 RLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAP-VMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred hhhhhcccccCcccccCcceecCCCCC---CChHHCCch-hcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 65332111 00111112334777764 555667765 33221 1122333334556788999999999999999988
Q ss_pred HHhhh------CCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHH
Q 044012 233 FRRVT------GKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAAL 306 (490)
Q Consensus 233 ~~~~~------~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al 306 (490)
+.... .++++.|||+....... .....++++.+||+.+++++||||||||....+.+++.+++.+|
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl~~~~~~~--------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL 297 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPVISLAFTP--------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGL 297 (480)
T ss_pred HHhccccccCCCCceEEeCCCccccccC--------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 87632 15799999997432110 00113567999999998899999999999889999999999999
Q ss_pred HHcCCceEEEEccCCCC-C---CchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHH
Q 044012 307 KESGHSFIWVVGKILKT-D---DDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVS 382 (490)
Q Consensus 307 ~~~~~~~i~~~~~~~~~-~---~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~ 382 (490)
+..+++|||++...... . .+.+....+|++|.++.. ..++++.+|+||.+||+|+++++|||||||||+.||++
T Consensus 298 ~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~ 375 (480)
T PLN00164 298 ERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTK--GRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLW 375 (480)
T ss_pred HHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhc--CCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHH
Confidence 99999999999853100 0 001122348889998887 77898989999999999999999999999999999999
Q ss_pred hCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcH-HHHHHHHHHHHHHH
Q 044012 383 AGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQ-EAVKMRKKANHLKE 461 (490)
Q Consensus 383 ~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~-~~~~~~~~a~~l~~ 461 (490)
+|||||++|+++||+.||+++++.+|+|+.+..... .++.++.++|.++|+++|. +++ +++.+|++|+++++
T Consensus 376 ~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~------~~~~~~~e~l~~av~~vm~-~~~~~~~~~r~~a~~~~~ 448 (480)
T PLN00164 376 HGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRK------RDNFVEAAELERAVRSLMG-GGEEEGRKAREKAAEMKA 448 (480)
T ss_pred cCCCEEeCCccccchhHHHHHHHHhCeEEEeccccc------cCCcCcHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHH
Confidence 999999999999999999987557899999853200 0124799999999999998 333 47899999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhc
Q 044012 462 LAKKAVEEGGSSCNDLKALIEDIRLYK 488 (490)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~~~~~~~ 488 (490)
++++++++||||.+++++|+++++...
T Consensus 449 ~~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 449 ACRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998764
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.8e-61 Score=477.52 Aligned_cols=445 Identities=26% Similarity=0.474 Sum_probs=332.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhh--hhhcccccCCCceEEEEeeCCCCcCCC-CCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTMNARRFQ--NAIDRDSRLGREISLRILRFPSQEAGL-PEG 81 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~ 81 (490)
.+.||+++|+|++||++|++.||+.|+.+ |..|||++++....... ....... ...+++++.+|++.. +++ +.+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~-~~l~~~~ 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDV-DNLVEPD 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCcc-ccCCCCC
Confidence 35699999999999999999999999987 99999998876554331 1111100 012589999986542 122 111
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcC--CCcEEEEcCCCcchHHHHHHhCCC-eEEEecccHHHHHHHHhhh
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFREQ--NPNCIVSDNLFPWTVSIAEELGIP-RLAFTGSGFFNNCVSHSLE 158 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~VI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~ 158 (490)
. .....+........+.+.++|++. ++++||+|.+..|+..+|+.+||| .+.++++..+...++.++.
T Consensus 80 ------~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~ 150 (470)
T PLN03015 80 ------A---TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLP 150 (470)
T ss_pred ------c---cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhh
Confidence 0 222234444445667777777754 689999999999999999999999 5777788777766665543
Q ss_pred hcCCC-CC-CCCCCceeecCCCCCCcccCCCCCCCccccCCCc-hhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHh
Q 044012 159 HHQPF-KN-IVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTG-FSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRR 235 (490)
Q Consensus 159 ~~~~~-~~-~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 235 (490)
..... .. ......+..+|+++. +..++++..+...... +..+. .......+++++++|||++||+.+++.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~ 226 (470)
T PLN03015 151 VLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRSDQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLAALRE 226 (470)
T ss_pred hhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCCcHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 21110 11 001113455788864 5666777541222111 33333 333457789999999999999999988876
Q ss_pred hh------CCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc
Q 044012 236 VT------GKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES 309 (490)
Q Consensus 236 ~~------~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 309 (490)
.+ .+.++.|||+...... ...++++.+|||.+++++||||||||...++.+++.+++.+|+.+
T Consensus 227 ~~~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s 295 (470)
T PLN03015 227 DMELNRVMKVPVYPIGPIVRTNVH-----------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELS 295 (470)
T ss_pred hcccccccCCceEEecCCCCCccc-----------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhC
Confidence 42 2569999999742110 012357999999998899999999999999999999999999999
Q ss_pred CCceEEEEccCCC-----CCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhC
Q 044012 310 GHSFIWVVGKILK-----TDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAG 384 (490)
Q Consensus 310 ~~~~i~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~G 384 (490)
+++|||++..... ..+..+....+|++|.+++. ..++++.+|+||.+||+|+++++|||||||||+.||+++|
T Consensus 296 ~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~--~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~G 373 (470)
T PLN03015 296 GQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTR--GVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKG 373 (470)
T ss_pred CCcEEEEEecCccccccccccccchhhcCChHHHHhhc--cCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcC
Confidence 9999999964310 00011123348899999887 7778889999999999999999999999999999999999
Q ss_pred CcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 385 VPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 385 vP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
||||++|++.||+.||+++++.+|+|+.+.... .++.++.++|.++|+++|...+++++.+|+||++++++++
T Consensus 374 vP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~-------~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~ 446 (470)
T PLN03015 374 VPIVAWPLYAEQWMNATLLTEEIGVAVRTSELP-------SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSE 446 (470)
T ss_pred CCEEecccccchHHHHHHHHHHhCeeEEecccc-------cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999977999999996210 0126899999999999996113678899999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHH
Q 044012 465 KAVEEGGSSCNDLKALIEDIR 485 (490)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~~~~ 485 (490)
+|+++||||..++++|++++.
T Consensus 447 ~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 447 RAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHhcCCCcHHHHHHHHHHhcc
Confidence 999999999999999998874
No 14
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.3e-61 Score=478.56 Aligned_cols=430 Identities=29% Similarity=0.507 Sum_probs=322.3
Q ss_pred CCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCc-
Q 044012 4 ENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGC- 82 (490)
Q Consensus 4 ~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~- 82 (490)
+.++.||+++|++++||++||+.||+.|+.+|+.|||++++.....+... ...+++|+.+| +++|++.
T Consensus 2 ~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~ 70 (449)
T PLN02173 2 EKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGF 70 (449)
T ss_pred CCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCccc
Confidence 34567999999999999999999999999999999999998765544221 12358888886 2455532
Q ss_pred cCCCCCCChhhHhhHHHHH-HhhHHHHHHHhhc----CCC-cEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHh
Q 044012 83 ENLMSTSTPETTKKLFPAL-ELLRPEIEKLFRE----QNP-NCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHS 156 (490)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~----~~p-D~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 156 (490)
+... ... .+.... ....+.+.++|++ .+| |+||+|.+..|+..+|+.+|||.+.+++++...+..+.+
T Consensus 71 ~~~~-----~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 71 SSAG-----SVP-EYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred cccc-----CHH-HHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 2211 111 222222 2445555555554 255 999999999999999999999999999988777655443
Q ss_pred hhhcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCC---chhhHHHHHHHhhhcccEEEEcchhhcChHHHHHH
Q 044012 157 LEHHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKST---GFSAMFDELNNAERKSFGVLMNSFYELEPAYADHF 233 (490)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 233 (490)
..... . .....+|+++. +..++++.+ +.... .....+........+++++++|||++||+++++.+
T Consensus 145 ~~~~~-----~--~~~~~~pg~p~---l~~~dlp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 213 (449)
T PLN02173 145 SYINN-----G--SLTLPIKDLPL---LELQDLPTF-VTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELL 213 (449)
T ss_pred HHhcc-----C--CccCCCCCCCC---CChhhCChh-hcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHH
Confidence 21100 0 12234677764 455667765 33211 12232333345567888999999999999999888
Q ss_pred HhhhCCceEEeccccCCCC--C-C-cchhccCCCCc--cCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHH
Q 044012 234 RRVTGKKAWHLGPVSLYNR--D-V-DDKAERGDKSC--VSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALK 307 (490)
Q Consensus 234 ~~~~~~~~~~vGpl~~~~~--~-~-~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~ 307 (490)
+.. .+++.|||+.+... . . ..... ....+ ..++.+.+||+.++++++|||||||....+.+++.+++.+|
T Consensus 214 ~~~--~~v~~VGPl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL- 289 (449)
T PLN02173 214 SKV--CPVLTIGPTVPSMYLDQQIKSDNDY-DLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI- 289 (449)
T ss_pred Hhc--CCeeEEcccCchhhccccccccccc-cccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh-
Confidence 653 46999999974311 0 0 00000 00011 12345889999998899999999999999999999999999
Q ss_pred HcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcE
Q 044012 308 ESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPM 387 (490)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~ 387 (490)
.+.+|||++... . .. .+|++|.++.. ++|+++++|+||.+||+|+++++|||||||||+.||+++||||
T Consensus 290 -s~~~flWvvr~~---~----~~-~lp~~~~~~~~--~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~ 358 (449)
T PLN02173 290 -SNFSYLWVVRAS---E----ES-KLPPGFLETVD--KDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPM 358 (449)
T ss_pred -cCCCEEEEEecc---c----hh-cccchHHHhhc--CCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCE
Confidence 678899999743 1 11 27888888776 6789999999999999999999999999999999999999999
Q ss_pred eeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Q 044012 388 VTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAV 467 (490)
Q Consensus 388 l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~ 467 (490)
|++|+++||+.||+++++.+|+|+.+...+ .+..++.++|.++|+++|. +++++.+|+||+++++++++|+
T Consensus 359 l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~-------~~~~~~~e~v~~av~~vm~--~~~~~~~r~~a~~~~~~a~~Av 429 (449)
T PLN02173 359 VAMPQWTDQPMNAKYIQDVWKVGVRVKAEK-------ESGIAKREEIEFSIKEVME--GEKSKEMKENAGKWRDLAVKSL 429 (449)
T ss_pred EecCchhcchHHHHHHHHHhCceEEEeecc-------cCCcccHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999975569999986431 0013799999999999998 5667899999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHH
Q 044012 468 EEGGSSCNDLKALIEDIR 485 (490)
Q Consensus 468 ~~~g~~~~~~~~~~~~~~ 485 (490)
++||+|..++++|++++.
T Consensus 430 ~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 430 SEGGSTDININTFVSKIQ 447 (449)
T ss_pred cCCCcHHHHHHHHHHHhc
Confidence 999999999999999885
No 15
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=8.1e-61 Score=476.29 Aligned_cols=438 Identities=26% Similarity=0.423 Sum_probs=330.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
.+.||+++|+|++||++||+.||+.|+++|++|||++++.+...++.... ....++|+.+++|.. +++|.+.+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~-dGLP~g~e~~ 77 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPV-DGLPFGAETA 77 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCc-CCCCCccccc
Confidence 35799999999999999999999999999999999999987766654311 112488888877643 4667664433
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCC
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKN 165 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (490)
..... .....+......+.+.+.++++..+||+||+| +..|+..+|+.+|||++.+++++.....++.+... .
T Consensus 78 ~~l~~-~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D-~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~-----~ 150 (446)
T PLN00414 78 SDLPN-STKKPIFDAMDLLRDQIEAKVRALKPDLIFFD-FVHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA-----E 150 (446)
T ss_pred ccchh-hHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEC-CchhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh-----h
Confidence 32221 12223444555677777888877889999999 47799999999999999999999988776654210 0
Q ss_pred CCCCCceeecCCCCCC-cccCCCC--CCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceE
Q 044012 166 IVSETQKFIVPGLPDQ-VKLSRSQ--LPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAW 242 (490)
Q Consensus 166 ~~~~~~~~~~p~l~~~-~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~ 242 (490)
. ...+|+++.. +.+...+ ++.+ +.. ....+........+++++++|||.+||+.+++.+...+++.++
T Consensus 151 ~-----~~~~pg~p~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~ 221 (446)
T PLN00414 151 L-----GFPPPDYPLSKVALRGHDANVCSL-FAN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVL 221 (446)
T ss_pred c-----CCCCCCCCCCcCcCchhhcccchh-hcc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeE
Confidence 0 0113444431 1111111 1222 211 1233444445667889999999999999999988775556899
Q ss_pred EeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCC
Q 044012 243 HLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILK 322 (490)
Q Consensus 243 ~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 322 (490)
.|||+...... . ......+++.+|||.+++++||||||||....+.+++.++..+|+..+.+|||++...
T Consensus 222 ~VGPl~~~~~~-~-------~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~-- 291 (446)
T PLN00414 222 LTGPMLPEPQN-K-------SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPP-- 291 (446)
T ss_pred EEcccCCCccc-c-------cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecC--
Confidence 99999653211 0 0011235688999999999999999999999999999999999999999999999753
Q ss_pred CCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHH
Q 044012 323 TDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKL 402 (490)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~r 402 (490)
....+....+|++|.++++ ..++++.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.||+.||++
T Consensus 292 -~~~~~~~~~lp~~f~~r~~--~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~ 368 (446)
T PLN00414 292 -KGSSTVQEALPEGFEERVK--GRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRL 368 (446)
T ss_pred -CCcccchhhCChhHHHHhc--CCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHH
Confidence 1110112348999999987 7788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 044012 403 VTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIE 482 (490)
Q Consensus 403 v~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 482 (490)
+++.+|+|+.+...+ ++.+++++|+++++++|.|+++.+++||++|+++++.+. ++||++ ..+++|++
T Consensus 369 ~~~~~g~g~~~~~~~--------~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~ 436 (446)
T PLN00414 369 LTEELEVSVKVQRED--------SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVE 436 (446)
T ss_pred HHHHhCeEEEecccc--------CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHH
Confidence 965799999996430 125899999999999998333567789999999999986 677744 33899999
Q ss_pred HHHhhcC
Q 044012 483 DIRLYKH 489 (490)
Q Consensus 483 ~~~~~~~ 489 (490)
+++..+.
T Consensus 437 ~~~~~~~ 443 (446)
T PLN00414 437 ALENEVN 443 (446)
T ss_pred HHHHhcc
Confidence 9987653
No 16
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-60 Score=476.00 Aligned_cols=429 Identities=25% Similarity=0.452 Sum_probs=318.0
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
|+++.+ .||+++|+|++||++||+.||+.|+++|++|||++++.+...+...... ..+++|+.+|.. ++.
T Consensus 1 ~~~~~~-~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~g-----~~~ 70 (448)
T PLN02562 1 MKVTQR-PKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISDG-----QDD 70 (448)
T ss_pred CCCCCC-cEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCCC-----CCC
Confidence 665544 6999999999999999999999999999999999999877665543211 125888887632 221
Q ss_pred CccCCCCCCChhhHhhHHHHHH-hhHHHHHHHhhcC----CCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHH
Q 044012 81 GCENLMSTSTPETTKKLFPALE-LLRPEIEKLFREQ----NPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSH 155 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~----~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 155 (490)
+. . ..++ .+..... ...+.+.+++++. ++++||+|.+..|+..+|+.+|||.+.+++++...+..+.
T Consensus 71 ~~------~-~~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~ 142 (448)
T PLN02562 71 DP------P-RDFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQ 142 (448)
T ss_pred Cc------c-ccHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHH
Confidence 11 0 1222 2333333 3555566666542 3489999999999999999999999999999888776655
Q ss_pred hhhhcCCCCCCC-----CCCcee-ecCCCCCCcccCCCCCCCccccCC---CchhhHHHHHHHhhhcccEEEEcchhhcC
Q 044012 156 SLEHHQPFKNIV-----SETQKF-IVPGLPDQVKLSRSQLPDIVKCKS---TGFSAMFDELNNAERKSFGVLMNSFYELE 226 (490)
Q Consensus 156 ~~~~~~~~~~~~-----~~~~~~-~~p~l~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 226 (490)
+..........+ ....+. .+|+++. +..++++.+ +... ......+.+......+++++++|||.+||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE 218 (448)
T PLN02562 143 AIPELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWL-IGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEE 218 (448)
T ss_pred HHHHHhhccccccccccccccccccCCCCCC---CChhhCcch-hcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhC
Confidence 443211111111 011111 4677654 455666655 3211 11223334444556678899999999999
Q ss_pred hHHHHHHHh----hhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcc-cCCHHHHHH
Q 044012 227 PAYADHFRR----VTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLT-RFSKEQTSE 301 (490)
Q Consensus 227 ~~~~~~~~~----~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~ 301 (490)
+.++..... +..++++.|||++....... .....+..+.++.+||+.++++++|||||||+. ..+.+++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~----~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~ 294 (448)
T PLN02562 219 YDDVKNHQASYNNGQNPQILQIGPLHNQEATTI----TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRT 294 (448)
T ss_pred HHHHHHHHhhhccccCCCEEEecCccccccccc----CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHH
Confidence 988876643 23478999999976431100 000001123456799999988899999999986 578999999
Q ss_pred HHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHH
Q 044012 302 IAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGV 381 (490)
Q Consensus 302 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal 381 (490)
++.+|++.+++|||++... .. ..+|++|.++. ++|+.+++|+||.+||+|+++++|||||||||+.||+
T Consensus 295 l~~~l~~~g~~fiW~~~~~---~~-----~~l~~~~~~~~---~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal 363 (448)
T PLN02562 295 LALALEASGRPFIWVLNPV---WR-----EGLPPGYVERV---SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAI 363 (448)
T ss_pred HHHHHHHCCCCEEEEEcCC---ch-----hhCCHHHHHHh---ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHH
Confidence 9999999999999999653 11 12777887766 5688889999999999999999999999999999999
Q ss_pred HhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 044012 382 SAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKE 461 (490)
Q Consensus 382 ~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~ 461 (490)
++|||||++|+++||+.||+++++.+|+|+.+. +++.++|.++|+++|. + ++||+||+++++
T Consensus 364 ~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~-------------~~~~~~l~~~v~~~l~-~----~~~r~~a~~l~~ 425 (448)
T PLN02562 364 QCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS-------------GFGQKEVEEGLRKVME-D----SGMGERLMKLRE 425 (448)
T ss_pred HcCCCEEeCCcccchHHHHHHHHHHhCceeEeC-------------CCCHHHHHHHHHHHhC-C----HHHHHHHHHHHH
Confidence 999999999999999999999963468887773 4799999999999998 4 589999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHH
Q 044012 462 LAKKAVEEGGSSCNDLKALIEDIR 485 (490)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~~~~ 485 (490)
++.++ .+||||..++++|+++++
T Consensus 426 ~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 426 RAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHhc-CCCCCHHHHHHHHHHHhC
Confidence 99876 567999999999999874
No 17
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.1e-60 Score=475.93 Aligned_cols=441 Identities=28% Similarity=0.430 Sum_probs=324.4
Q ss_pred CCCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCC
Q 044012 4 ENQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEG 81 (490)
Q Consensus 4 ~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (490)
++.+.||+++|+|++||++|++.||++|++| ||+|||++++.+.+.++.... ..+++|+.+|. +++.+
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~-----~~p~~ 76 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPN-----VIPSE 76 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCC-----CCCCc
Confidence 4678999999999999999999999999999 999999999998887776421 13688888863 22322
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhc--CCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhh
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFRE--QNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEH 159 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 159 (490)
.... . +....+....+.....+.+++++ .++|+||+|.++.|+..+|+.+|||++.+++++...+..+.++..
T Consensus 77 ~~~~--~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~ 151 (459)
T PLN02448 77 LVRA--A---DFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDL 151 (459)
T ss_pred cccc--c---CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhh
Confidence 2111 1 11111112222344555566654 367999999999999999999999999999999877766655532
Q ss_pred cCCCCCCCCCC-----c-eeecCCCCCCcccCCCCCCCccccCCC-chhhHHHHHHHhhhcccEEEEcchhhcChHHHHH
Q 044012 160 HQPFKNIVSET-----Q-KFIVPGLPDQVKLSRSQLPDIVKCKST-GFSAMFDELNNAERKSFGVLMNSFYELEPAYADH 232 (490)
Q Consensus 160 ~~~~~~~~~~~-----~-~~~~p~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 232 (490)
.......+... . ...+|+++. +...+++.+ +.... .....+........++..+++|||++||+.+++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~-~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 227 (459)
T PLN02448 152 LPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPI-FHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDA 227 (459)
T ss_pred hhhccCCCCccccccCCccccCCCCCC---CChHHCchh-hcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHH
Confidence 21111111100 1 113565543 344455554 32221 1122333444455677899999999999999999
Q ss_pred HHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCc
Q 044012 233 FRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHS 312 (490)
Q Consensus 233 ~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 312 (490)
+...++.+++.|||+......... .. .......+.++.+|++..+.+++|||||||....+.+++.+++.+|+..+++
T Consensus 228 l~~~~~~~~~~iGP~~~~~~~~~~-~~-~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~ 305 (459)
T PLN02448 228 LKSKFPFPVYPIGPSIPYMELKDN-SS-SSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVR 305 (459)
T ss_pred HHhhcCCceEEecCcccccccCCC-cc-ccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 877666789999998653211000 00 0000111347889999988899999999999888899999999999999999
Q ss_pred eEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccC
Q 044012 313 FIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPV 392 (490)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~ 392 (490)
|||++... . .++.+.. ++|+++++|+||.+||+|+++++|||||||||+.||+++|||||++|+
T Consensus 306 ~lw~~~~~---~----------~~~~~~~---~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~ 369 (459)
T PLN02448 306 FLWVARGE---A----------SRLKEIC---GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPL 369 (459)
T ss_pred EEEEEcCc---h----------hhHhHhc---cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccc
Confidence 99987643 1 1232222 347888899999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 044012 393 FAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGS 472 (490)
Q Consensus 393 ~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 472 (490)
+.||+.||+++++.+|+|+.+.... ..++.+++++|+++|+++|.++++++++||+||+++++.+++++.+||+
T Consensus 370 ~~DQ~~na~~v~~~~g~G~~~~~~~------~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGs 443 (459)
T PLN02448 370 FWDQPLNSKLIVEDWKIGWRVKREV------GEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGS 443 (459)
T ss_pred cccchhhHHHHHHHhCceEEEeccc------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999963479998885320 0012579999999999999832367889999999999999999999999
Q ss_pred cHHHHHHHHHHHHhh
Q 044012 473 SCNDLKALIEDIRLY 487 (490)
Q Consensus 473 ~~~~~~~~~~~~~~~ 487 (490)
|..++++|++++++-
T Consensus 444 s~~~l~~~v~~~~~~ 458 (459)
T PLN02448 444 SDTNLDAFIRDISQG 458 (459)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999853
No 18
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=6e-60 Score=468.68 Aligned_cols=435 Identities=27% Similarity=0.496 Sum_probs=313.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCC--CeEEE--EeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANG--IQVTI--ILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGC 82 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rG--h~Vt~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (490)
..||+++|++++||++||+.||+.|+.+| +.||+ +.++.+...+............+++|+.+|++.. .+.+.
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~ 79 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP---YSSSS 79 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC---CCCcc
Confidence 46999999999999999999999999998 55666 4443322222211111001112599999875421 11111
Q ss_pred cCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcC----CCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhh
Q 044012 83 ENLMSTSTPETTKKLFPALELLRPEIEKLFREQ----NPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLE 158 (490)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 158 (490)
.. .. .....+..........+.++|++. ++++||+|.+..|+..+|+.+|||.+.++++++..+.++.+..
T Consensus 80 ~~--~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 80 TS--RH---HHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred cc--cc---CHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 11 11 111122222233344444555432 4599999999999999999999999999999999888877654
Q ss_pred hcCCCC-CCC-CCCceeecCCCCCCcccCCCCCCCccccCCC-chhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHh
Q 044012 159 HHQPFK-NIV-SETQKFIVPGLPDQVKLSRSQLPDIVKCKST-GFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRR 235 (490)
Q Consensus 159 ~~~~~~-~~~-~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 235 (490)
...... ... ....+..+|+++. +..++++.. ++... .....+........+++++++|||++||+.+++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~ 230 (451)
T PLN03004 155 TIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKA-VLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITE 230 (451)
T ss_pred hccccccccccccCCeecCCCCCC---CChHHCchh-hcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHh
Confidence 221110 000 1112345777764 455667765 33221 2233444445556778899999999999999998876
Q ss_pred hhC-CceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceE
Q 044012 236 VTG-KKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFI 314 (490)
Q Consensus 236 ~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 314 (490)
.+. ++++.|||+....... . .. . ..+.++.+|||.+++++||||||||...++.+++.+|+.+|+..+++||
T Consensus 231 ~~~~~~v~~vGPl~~~~~~~-~----~~-~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~Fl 303 (451)
T PLN03004 231 ELCFRNIYPIGPLIVNGRIE-D----RN-D-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFL 303 (451)
T ss_pred cCCCCCEEEEeeeccCcccc-c----cc-c-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEE
Confidence 443 5899999997422100 0 00 0 1235689999999889999999999999999999999999999999999
Q ss_pred EEEccCCCCCC-chhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCc
Q 044012 315 WVVGKILKTDD-DQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVF 393 (490)
Q Consensus 315 ~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~ 393 (490)
|++........ ..+...++|++|.++.. ..|+++.+|+||.+||+|+++++|||||||||+.||+++|||||++|++
T Consensus 304 W~~r~~~~~~~~~~~~~~~lp~gf~er~~--~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~ 381 (451)
T PLN03004 304 WVVRNPPELEKTELDLKSLLPEGFLSRTE--DKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLY 381 (451)
T ss_pred EEEcCCccccccccchhhhCChHHHHhcc--CCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecccc
Confidence 99985310000 00122248889999988 7899999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 044012 394 AEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSS 473 (490)
Q Consensus 394 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 473 (490)
.||+.||+++++.+|+|+.++..+ ++.++.++|.++|+++|+ + ++||++++++++..++|+++||||
T Consensus 382 ~DQ~~na~~~~~~~g~g~~l~~~~--------~~~~~~e~l~~av~~vm~-~----~~~r~~a~~~~~~a~~Av~~GGSS 448 (451)
T PLN03004 382 AEQRFNRVMIVDEIKIAISMNESE--------TGFVSSTEVEKRVQEIIG-E----CPVRERTMAMKNAAELALTETGSS 448 (451)
T ss_pred ccchhhHHHHHHHhCceEEecCCc--------CCccCHHHHHHHHHHHhc-C----HHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999963579999997530 025799999999999998 4 589999999999999999999998
Q ss_pred HH
Q 044012 474 CN 475 (490)
Q Consensus 474 ~~ 475 (490)
..
T Consensus 449 ~~ 450 (451)
T PLN03004 449 HT 450 (451)
T ss_pred CC
Confidence 64
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.2e-59 Score=465.09 Aligned_cols=437 Identities=26% Similarity=0.454 Sum_probs=315.2
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHH-CCCeEEEEeCCcc-hhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCcc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAA-NGIQVTIILTTMN-ARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCE 83 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~-rGh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (490)
.+.||+++|+|++||++|++.||+.|+. +|+.|||++++.. ....... .. ...+++|+.++ ++++.+.+
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~---~~-~~~~i~~~~i~-----dglp~g~~ 72 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN---HN-NVENLSFLTFS-----DGFDDGVI 72 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc---CC-CCCCEEEEEcC-----CCCCCccc
Confidence 4569999999999999999999999996 6999999999853 2211111 00 11258888875 34555432
Q ss_pred CCCCCCChhhHhhHHHHHHhhHHHHHHHhhc-----CCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhh
Q 044012 84 NLMSTSTPETTKKLFPALELLRPEIEKLFRE-----QNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLE 158 (490)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 158 (490)
... . .....+........+.+.+++++ .++++||+|.+..|+..+|+.+|||.+.+++++...+..+.++.
T Consensus 73 ~~~--~--~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~ 148 (455)
T PLN02152 73 SNT--D--DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYS 148 (455)
T ss_pred ccc--c--cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhh
Confidence 111 1 22222333333444455555543 23499999999999999999999999999999998887766543
Q ss_pred hcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCC---chhhHHHHHHHhhh--cccEEEEcchhhcChHHHHHH
Q 044012 159 HHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKST---GFSAMFDELNNAER--KSFGVLMNSFYELEPAYADHF 233 (490)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~~~~~~~ 233 (490)
... .....+|+++. +..++++.+ ++... .+...+........ .++++++|||++||+.+++..
T Consensus 149 ~~~--------~~~~~iPglp~---l~~~dlp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l 216 (455)
T PLN02152 149 TGN--------NSVFEFPNLPS---LEIRDLPSF-LSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAI 216 (455)
T ss_pred ccC--------CCeeecCCCCC---CchHHCchh-hcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhh
Confidence 210 12345777764 455677765 33211 12334434444333 346899999999999999888
Q ss_pred HhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCce
Q 044012 234 RRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSF 313 (490)
Q Consensus 234 ~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 313 (490)
.. ..++.|||+.+...............+..+.++.+|||.+++++||||||||+..++.+++.+++.+|++++++|
T Consensus 217 ~~---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~f 293 (455)
T PLN02152 217 PN---IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPF 293 (455)
T ss_pred hc---CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCe
Confidence 54 369999999753210000000000001124579999999988899999999999999999999999999999999
Q ss_pred EEEEccCCCCCC--chhhh-c-cCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEee
Q 044012 314 IWVVGKILKTDD--DQEEE-S-WLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVT 389 (490)
Q Consensus 314 i~~~~~~~~~~~--~~~~~-~-~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 389 (490)
||++........ ..+.. . .+|++|.++. ++|..+.+|+||.+||+|+++++|||||||||+.||+++|||||+
T Consensus 294 lWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~---~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~ 370 (455)
T PLN02152 294 LWVITDKLNREAKIEGEEETEIEKIAGFRHEL---EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVA 370 (455)
T ss_pred EEEEecCcccccccccccccccccchhHHHhc---cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEe
Confidence 999975300000 00000 0 1366777765 457788899999999999999999999999999999999999999
Q ss_pred ccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc
Q 044012 390 WPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEE 469 (490)
Q Consensus 390 ~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~ 469 (490)
+|+++||+.||+++++.+|+|+.+..+. ++.++.++|.++|+++|+ + ++..||+||+++++.+++++.+
T Consensus 371 ~P~~~DQ~~na~~~~~~~~~G~~~~~~~--------~~~~~~e~l~~av~~vm~-~--~~~~~r~~a~~~~~~~~~a~~~ 439 (455)
T PLN02152 371 FPMWSDQPANAKLLEEIWKTGVRVRENS--------EGLVERGEIRRCLEAVME-E--KSVELRESAEKWKRLAIEAGGE 439 (455)
T ss_pred ccccccchHHHHHHHHHhCceEEeecCc--------CCcCcHHHHHHHHHHHHh-h--hHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999964457777764320 125799999999999997 3 2347999999999999999999
Q ss_pred CCCcHHHHHHHHHHH
Q 044012 470 GGSSCNDLKALIEDI 484 (490)
Q Consensus 470 ~g~~~~~~~~~~~~~ 484 (490)
||+|..++++|+++|
T Consensus 440 ggsS~~nl~~li~~i 454 (455)
T PLN02152 440 GGSSDKNVEAFVKTL 454 (455)
T ss_pred CCcHHHHHHHHHHHh
Confidence 999999999999987
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.3e-59 Score=471.35 Aligned_cols=451 Identities=28% Similarity=0.464 Sum_probs=321.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCC--CeEEEEeCCcchhhh---hhhhccccc-CCCceEEEEeeCCCCcCCCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANG--IQVTIILTTMNARRF---QNAIDRDSR-LGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rG--h~Vt~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~ 80 (490)
++||+++|++++||++||+.||+.|+.+| ..|||++++.+.... ......... ...+++|+.+|++.. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----PT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC----Cc
Confidence 47999999999999999999999999998 889999998764321 111110000 022599999875431 11
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhc-----CCC-cEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHH
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFRE-----QNP-NCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVS 154 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~p-D~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 154 (490)
. . . ......+......+.+.+.+++.+ .+| ++||+|.+..|+..+|+.+|||++.+++++...+.++
T Consensus 78 ~--~---~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 78 T--E---D--PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred c--c---c--hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 0 0 0 111111111122333444444432 133 8999999999999999999999999999999988887
Q ss_pred HhhhhcCCC-----CCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHH
Q 044012 155 HSLEHHQPF-----KNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAY 229 (490)
Q Consensus 155 ~~~~~~~~~-----~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~ 229 (490)
.+....... ...+....+..+|+++.. +...+++.. ++.. .....+.........++++++||+.+||+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~-~~~~-~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~ 226 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSV-LLSK-EWLPLFLAQARRFREMKGILVNTVAELEPQA 226 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCc-ccCH-HHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 766432111 011111123457877421 444566654 3221 2233344445567788999999999999988
Q ss_pred HHHHHhh--hCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHH
Q 044012 230 ADHFRRV--TGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALK 307 (490)
Q Consensus 230 ~~~~~~~--~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~ 307 (490)
...+... ..++++.|||+........ . .....++++.+|++.+++++||||||||+...+.+++.+++.+|+
T Consensus 227 ~~~l~~~~~~~~~v~~vGpl~~~~~~~~-----~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~ 300 (481)
T PLN02554 227 LKFFSGSSGDLPPVYPVGPVLHLENSGD-----D-SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALE 300 (481)
T ss_pred HHHHHhcccCCCCEEEeCCCcccccccc-----c-cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHH
Confidence 8777642 2368999999943221100 0 001245689999999888899999999998899999999999999
Q ss_pred HcCCceEEEEccCCC----C--CCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHH
Q 044012 308 ESGHSFIWVVGKILK----T--DDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGV 381 (490)
Q Consensus 308 ~~~~~~i~~~~~~~~----~--~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal 381 (490)
+++++|||+++.... + ....+....+|++|.++. .+|+++++|+||.+||+|+++++|||||||||+.||+
T Consensus 301 ~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~---~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~ 377 (481)
T PLN02554 301 RSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT---KDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESL 377 (481)
T ss_pred HcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHh---ccCceEEeeCCHHHHhCCcccCcccccCccchHHHHH
Confidence 999999999975300 0 000011123688888776 4577888999999999999999999999999999999
Q ss_pred HhCCcEeeccCcccccchHH-HHHHhhccceeeccccccccc-cCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044012 382 SAGVPMVTWPVFAEQFNNEK-LVTQVLKFGLPVGNEIWKIWA-TQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHL 459 (490)
Q Consensus 382 ~~GvP~l~~P~~~DQ~~na~-rv~e~~G~G~~l~~~~~~~~~-~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l 459 (490)
++|||||++|+++||+.||+ ++ +.+|+|+.++...+. ++ ...+..+++++|.++|+++|+++ ++||+||+++
T Consensus 378 ~~GVP~l~~P~~~DQ~~Na~~~v-~~~g~Gv~l~~~~~~-~~~~~~~~~~~~e~l~~av~~vm~~~----~~~r~~a~~l 451 (481)
T PLN02554 378 WFGVPMAAWPLYAEQKFNAFEMV-EELGLAVEIRKYWRG-DLLAGEMETVTAEEIERGIRCLMEQD----SDVRKRVKEM 451 (481)
T ss_pred HcCCCEEecCccccchhhHHHHH-HHhCceEEeeccccc-cccccccCeEcHHHHHHHHHHHhcCC----HHHHHHHHHH
Confidence 99999999999999999995 56 799999998631000 00 00012689999999999999623 5999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q 044012 460 KELAKKAVEEGGSSCNDLKALIEDIRLY 487 (490)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 487 (490)
++++++++++||+|..++++|+++++..
T Consensus 452 ~~~~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 452 SEKCHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999753
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-58 Score=467.90 Aligned_cols=457 Identities=26% Similarity=0.426 Sum_probs=318.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCC---eEEEEeCCcchh-hhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGI---QVTIILTTMNAR-RFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh---~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
+++.||+|+|+|++||++||+.||+.|+.+|. .||+++++.... ..............+++|+.+|++.. +.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----p~ 76 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQD----PP 76 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCC----Cc
Confidence 35679999999999999999999999999984 567766543211 11111111000112599999885531 21
Q ss_pred CccCCCCCCChhhHhhHHHHH-HhhHHHHHHHhhc-----C-CCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHH
Q 044012 81 GCENLMSTSTPETTKKLFPAL-ELLRPEIEKLFRE-----Q-NPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCV 153 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~-----~-~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 153 (490)
+.+..... ....+..+...+ ..+.+.+.+++.+ . ++++||+|.+..|+..+|+.+|||.+.+++++...+.+
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~ 155 (475)
T PLN02167 77 PMELFVKA-SEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGM 155 (475)
T ss_pred cccccccc-hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHH
Confidence 11110100 001222222222 1223333333322 1 35999999999999999999999999999999988777
Q ss_pred HHhhhhcC-CCC-CC--CCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHH
Q 044012 154 SHSLEHHQ-PFK-NI--VSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAY 229 (490)
Q Consensus 154 ~~~~~~~~-~~~-~~--~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~ 229 (490)
+.+..... ... .. .....+..+|+++.. +...+++.. ++... ....+........+++++++|||++||+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~-~~~~~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 156 MKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPG-LFMKE-SYEAWVEIAERFPEAKGILVNSFTELEPNA 231 (475)
T ss_pred HHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchh-hhCcc-hHHHHHHHHHhhcccCEeeeccHHHHHHHH
Confidence 76543211 100 00 011133457887432 344455543 22211 122333444556788999999999999999
Q ss_pred HHHHHhhh--CCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHH
Q 044012 230 ADHFRRVT--GKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALK 307 (490)
Q Consensus 230 ~~~~~~~~--~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~ 307 (490)
++.+.... -++++.|||+........ .......+.++.+||+..++++||||||||+...+.+++.+++.+|+
T Consensus 232 ~~~l~~~~~~~p~v~~vGpl~~~~~~~~-----~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~ 306 (475)
T PLN02167 232 FDYFSRLPENYPPVYPVGPILSLKDRTS-----PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALE 306 (475)
T ss_pred HHHHHhhcccCCeeEEeccccccccccC-----CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHH
Confidence 98886531 167999999976421100 00001123679999999988999999999998899999999999999
Q ss_pred HcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcE
Q 044012 308 ESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPM 387 (490)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~ 387 (490)
.++++|||+++.... .. .+....+|++|.+++. . ..++++|+||.+||+|+++++|||||||||+.||+++||||
T Consensus 307 ~~~~~flw~~~~~~~-~~-~~~~~~lp~~~~er~~--~-rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~ 381 (475)
T PLN02167 307 LVGCRFLWSIRTNPA-EY-ASPYEPLPEGFMDRVM--G-RGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPI 381 (475)
T ss_pred hCCCcEEEEEecCcc-cc-cchhhhCChHHHHHhc--c-CeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCE
Confidence 999999999975310 00 0111237888888774 3 35677999999999999999999999999999999999999
Q ss_pred eeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Q 044012 388 VTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAV 467 (490)
Q Consensus 388 l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~ 467 (490)
|++|+++||+.||.++++.+|+|+.+....+ + ..+..+++++|.++|+++|.|+ +.||+||+++++++++++
T Consensus 382 l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~---~-~~~~~~~~~~l~~av~~~m~~~----~~~r~~a~~~~~~~~~av 453 (475)
T PLN02167 382 ATWPMYAEQQLNAFTMVKELGLAVELRLDYV---S-AYGEIVKADEIAGAVRSLMDGE----DVPRKKVKEIAEAARKAV 453 (475)
T ss_pred EeccccccchhhHHHHHHHhCeeEEeecccc---c-ccCCcccHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHH
Confidence 9999999999999863379999999864200 0 0012579999999999999833 489999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhhc
Q 044012 468 EEGGSSCNDLKALIEDIRLYK 488 (490)
Q Consensus 468 ~~~g~~~~~~~~~~~~~~~~~ 488 (490)
++||+|..++++||++|+.++
T Consensus 454 ~~gGsS~~~l~~~v~~i~~~~ 474 (475)
T PLN02167 454 MDGGSSFVAVKRFIDDLLGDH 474 (475)
T ss_pred hCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999999998764
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.2e-51 Score=416.26 Aligned_cols=408 Identities=15% Similarity=0.214 Sum_probs=283.2
Q ss_pred CcceEEEE-cCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 6 QKLHVMFL-PYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 6 ~~~~Il~~-~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
...||+++ |.++.||+.-+.+|+++|++|||+||++++.... ..... ...+++...++.... ........
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~------~~~~~~~i~~~~~~~--~~~~~~~~ 89 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH------LCGNITEIDASLSVE--YFKKLVKS 89 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC------CCCCEEEEEcCCChH--HHHHHHhh
Confidence 35678755 8899999999999999999999999999874311 11000 012444444331111 10000000
Q ss_pred --C-C---CCCC-----hhhHhhHHHHHH--hhHHHHHHHhh--cCCCcEEEEcCCCcchHHHHHHh-CCCeEEEecccH
Q 044012 85 --L-M---STST-----PETTKKLFPALE--LLRPEIEKLFR--EQNPNCIVSDNLFPWTVSIAEEL-GIPRLAFTGSGF 148 (490)
Q Consensus 85 --~-~---~~~~-----~~~~~~~~~~~~--~~~~~l~~~l~--~~~pD~VI~D~~~~~~~~~A~~l-giP~v~~~~~~~ 148 (490)
. . .... ......+...|+ ...+++.++|+ +.++|+||+|.+..|+..+|+.+ ++|.|.++++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 0 0 0000 001111223343 22567788887 67899999999888999999999 999988877665
Q ss_pred HHHHHHHhhh-hcCCCCCCCCCCceeecC----CCCCCcccCCCCCCCcc-------ccC-CCchhhHHHH--------H
Q 044012 149 FNNCVSHSLE-HHQPFKNIVSETQKFIVP----GLPDQVKLSRSQLPDIV-------KCK-STGFSAMFDE--------L 207 (490)
Q Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p----~l~~~~~~~~~~l~~~~-------~~~-~~~~~~~~~~--------~ 207 (490)
..... ...+ .+ ..+.++| ++..+|+++.|....+. +.. .....++.++ +
T Consensus 170 ~~~~~-~~~gg~p---------~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~ 239 (507)
T PHA03392 170 LAENF-ETMGAVS---------RHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTI 239 (507)
T ss_pred chhHH-HhhccCC---------CCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCH
Confidence 43322 2222 22 2333444 45566666655322110 000 0011111112 2
Q ss_pred HHhhhcccEEEEcchhhcChHHHHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEE
Q 044012 208 NNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYIC 287 (490)
Q Consensus 208 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs 287 (490)
.+..++.+.+++|+...++. ++++++++++|||+..+... .+++++++.+|++.+ ++++||||
T Consensus 240 ~~l~~~~~l~lvns~~~~d~------~rp~~p~v~~vGgi~~~~~~----------~~~l~~~l~~fl~~~-~~g~V~vS 302 (507)
T PHA03392 240 RELRNRVQLLFVNVHPVFDN------NRPVPPSVQYLGGLHLHKKP----------PQPLDDYLEEFLNNS-TNGVVYVS 302 (507)
T ss_pred HHHHhCCcEEEEecCccccC------CCCCCCCeeeecccccCCCC----------CCCCCHHHHHHHhcC-CCcEEEEE
Confidence 23344557788999777663 35788999999999764211 123578999999987 46899999
Q ss_pred eCCccc---CCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCC
Q 044012 288 FGSLTR---FSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQA 364 (490)
Q Consensus 288 ~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~ 364 (490)
|||... .+.+.+..+++|+++++++|||+++.. . .+.+ .++|+++.+|+||.+||+|+.
T Consensus 303 ~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~---~--------~~~~-------~p~Nv~i~~w~Pq~~lL~hp~ 364 (507)
T PHA03392 303 FGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE---V--------EAIN-------LPANVLTQKWFPQRAVLKHKN 364 (507)
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC---c--------Cccc-------CCCceEEecCCCHHHHhcCCC
Confidence 999864 578889999999999999999999865 1 1100 167999999999999999999
Q ss_pred ceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhcc
Q 044012 365 IGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDN 444 (490)
Q Consensus 365 ~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n 444 (490)
+++||||||+||++||+++|||||++|+++||+.||+|+ +++|+|+.++.. ++|+++|.++|+++|+
T Consensus 365 v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~-----------~~t~~~l~~ai~~vl~- 431 (507)
T PHA03392 365 VKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTV-----------TVSAAQLVLAIVDVIE- 431 (507)
T ss_pred CCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccC-----------CcCHHHHHHHHHHHhC-
Confidence 999999999999999999999999999999999999999 699999999987 8999999999999998
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q 044012 445 DDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDIRLY 487 (490)
Q Consensus 445 ~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 487 (490)
+ ++||+||+++++.++ +..-+..+.+..-+|.+.+.
T Consensus 432 ~----~~y~~~a~~ls~~~~---~~p~~~~~~av~~iE~v~r~ 467 (507)
T PHA03392 432 N----PKYRKNLKELRHLIR---HQPMTPLHKAIWYTEHVIRN 467 (507)
T ss_pred C----HHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhC
Confidence 5 699999999999999 34434445555666665544
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.9e-51 Score=422.90 Aligned_cols=383 Identities=22% Similarity=0.329 Sum_probs=229.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC---
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL--- 85 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--- 85 (490)
||+++|. ++||+.++..|+++|++|||+||++++..... +... ....++++.++.+.............
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-cccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 7888985 88999999999999999999999999743221 1111 12356677776443322222111110
Q ss_pred --CCCCChhhHhhHHH-----------HHHh--hHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHH
Q 044012 86 --MSTSTPETTKKLFP-----------ALEL--LRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFN 150 (490)
Q Consensus 86 --~~~~~~~~~~~~~~-----------~~~~--~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 150 (490)
.............. .|+. ...++.+.+++.++|++|+|.+..|+..+|+.+++|.+.+.+.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 00000001111111 1110 01334445566789999999998899999999999998764432211
Q ss_pred HHHHHhhhhcCCCCCCCCCCceeecC----CCCCCcccCCCCCCCccccCCCchhhHHH------------------HHH
Q 044012 151 NCVSHSLEHHQPFKNIVSETQKFIVP----GLPDQVKLSRSQLPDIVKCKSTGFSAMFD------------------ELN 208 (490)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~p----~l~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------~~~ 208 (490)
.. .......+..+.++| +++..|++..|....+ .... ....+. ...
T Consensus 154 ~~---------~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (500)
T PF00201_consen 154 DL---------SSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFL-FYLY--FRFIFRYFFSPQDKLYKKYFGFPFSFR 221 (500)
T ss_dssp CC---------TCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSH-HHHH--HHHHHHHGGGS-TTS-EEESS-GGGCH
T ss_pred hh---------hhhccCCCCChHHhccccccCCCccchhhhhhhhh-hhhh--hccccccchhhHHHHHhhhcccccccH
Confidence 10 000001122233333 4555666665533322 1000 000000 011
Q ss_pred HhhhcccEEEEcchhhcChHHHHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEe
Q 044012 209 NAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICF 288 (490)
Q Consensus 209 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~ 288 (490)
+...+++.+++|+...++ +++ +++++++++|+++..... +++.++..|++...++++|||||
T Consensus 222 ~~~~~~~l~l~ns~~~ld-----~pr-p~~p~v~~vGgl~~~~~~------------~l~~~~~~~~~~~~~~~vv~vsf 283 (500)
T PF00201_consen 222 ELLSNASLVLINSHPSLD-----FPR-PLLPNVVEVGGLHIKPAK------------PLPEELWNFLDSSGKKGVVYVSF 283 (500)
T ss_dssp HHHHHHHHCCSSTEEE---------H-HHHCTSTTGCGC-S----------------TCHHHHHHHTSTTTTTEEEEEE-
T ss_pred HHHHHHHHHhhhccccCc-----CCc-chhhcccccCcccccccc------------ccccccchhhhccCCCCEEEEec
Confidence 112223334555544443 333 455899999998765433 25788999999855789999999
Q ss_pred CCccc-CCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCcee
Q 044012 289 GSLTR-FSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGG 367 (490)
Q Consensus 289 GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~ 367 (490)
||+.. ++.+.++.+++|+++++++|||++.+. .... + ++|+++++|+||.+||+|+++++
T Consensus 284 Gs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-------~~~~-l-----------~~n~~~~~W~PQ~~lL~hp~v~~ 344 (500)
T PF00201_consen 284 GSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-------PPEN-L-----------PKNVLIVKWLPQNDLLAHPRVKL 344 (500)
T ss_dssp TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-------HGCH-H-----------HTTEEEESS--HHHHHTSTTEEE
T ss_pred CcccchhHHHHHHHHHHHHhhCCCccccccccc-------cccc-c-----------cceEEEeccccchhhhhccccee
Confidence 99976 455558889999999999999999865 1111 2 55999999999999999999999
Q ss_pred ecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcH
Q 044012 368 FLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQ 447 (490)
Q Consensus 368 ~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~ 447 (490)
||||||+||+.||+++|||||++|+++||+.||+++ +++|+|+.++.. ++|+++|.++|+++|+ |
T Consensus 345 fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~-----------~~~~~~l~~ai~~vl~-~-- 409 (500)
T PF00201_consen 345 FITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKN-----------DLTEEELRAAIREVLE-N-- 409 (500)
T ss_dssp EEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGG-----------C-SHHHHHHHHHHHHH-S--
T ss_pred eeeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEec-----------CCcHHHHHHHHHHHHh-h--
Confidence 999999999999999999999999999999999999 699999999988 8999999999999999 5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044012 448 EAVKMRKKANHLKELAKK 465 (490)
Q Consensus 448 ~~~~~~~~a~~l~~~~~~ 465 (490)
++|++||+++++.+++
T Consensus 410 --~~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 410 --PSYKENAKRLSSLFRD 425 (500)
T ss_dssp --HHHHHHHHHHHHTTT-
T ss_pred --hHHHHHHHHHHHHHhc
Confidence 6999999999999984
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=3.3e-44 Score=358.91 Aligned_cols=377 Identities=19% Similarity=0.226 Sum_probs=257.6
Q ss_pred EcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCChh
Q 044012 13 LPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTSTPE 92 (490)
Q Consensus 13 ~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 92 (490)
+.+|+.||++|++.||++|++|||+|+|++++.+.+.++.. ++.|..++........... ........
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~---~~~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPE---NTEEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcccccccc---ccCcchHH
Confidence 35799999999999999999999999999999999999987 7888877633211111111 00011112
Q ss_pred hHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCCCCCCCce
Q 044012 93 TTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKNIVSETQK 172 (490)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
....+..........+.+.+++.+||+||+|.+++++..+|+.+|||+|.+++.+.... .+ +..
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~---------~~~--- 132 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EF---------EEM--- 132 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cc---------ccc---
Confidence 23333333334455677777888999999999888999999999999998855422110 00 000
Q ss_pred eecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhh------------hcccEEEEcchhhcChHHHHHHHhhhCCc
Q 044012 173 FIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAE------------RKSFGVLMNSFYELEPAYADHFRRVTGKK 240 (490)
Q Consensus 173 ~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~l~~~~~~~~~~~~~~~ 240 (490)
.+.+...+.......... . ..+....+.+...+ ......+..+ ++++.+....++++
T Consensus 133 --~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~-----~~~l~~~~~~~~~~ 201 (392)
T TIGR01426 133 --VSPAGEGSAEEGAIAERG-L---AEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYT-----PKAFQPAGETFDDS 201 (392)
T ss_pred --ccccchhhhhhhccccch-h---HHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeC-----ChHhCCCccccCCC
Confidence 000000000000000000 0 00111111111110 0001112222 44454455668899
Q ss_pred eEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccC
Q 044012 241 AWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKI 320 (490)
Q Consensus 241 ~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 320 (490)
++++||+.... .+...|....+++++||||+||+.......+..+++++.+.+.++||..+..
T Consensus 202 ~~~~Gp~~~~~-----------------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~ 264 (392)
T TIGR01426 202 FTFVGPCIGDR-----------------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRG 264 (392)
T ss_pred eEEECCCCCCc-----------------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 99999975531 1223466665678899999999876666688889999999999999998765
Q ss_pred CCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchH
Q 044012 321 LKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNE 400 (490)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na 400 (490)
.+..++.. .++|+.+.+|+|+.++|+++++ +|||||+||+.||+++|+|+|++|...||+.||
T Consensus 265 ---~~~~~~~~------------~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a 327 (392)
T TIGR01426 265 ---VDPADLGE------------LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTA 327 (392)
T ss_pred ---CChhHhcc------------CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHH
Confidence 21111111 1668999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 044012 401 KLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKAL 480 (490)
Q Consensus 401 ~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 480 (490)
.++ +++|+|..+... .+++++|.++|+++|+ + ++|+++++++++++. +.+|. ..+.++
T Consensus 328 ~~l-~~~g~g~~l~~~-----------~~~~~~l~~ai~~~l~-~----~~~~~~~~~l~~~~~---~~~~~--~~aa~~ 385 (392)
T TIGR01426 328 RRI-AELGLGRHLPPE-----------EVTAEKLREAVLAVLS-D----PRYAERLRKMRAEIR---EAGGA--RRAADE 385 (392)
T ss_pred HHH-HHCCCEEEeccc-----------cCCHHHHHHHHHHHhc-C----HHHHHHHHHHHHHHH---HcCCH--HHHHHH
Confidence 999 699999999876 7999999999999998 5 589999999999998 45555 344555
Q ss_pred HHHH
Q 044012 481 IEDI 484 (490)
Q Consensus 481 ~~~~ 484 (490)
++.+
T Consensus 386 i~~~ 389 (392)
T TIGR01426 386 IEGF 389 (392)
T ss_pred HHHh
Confidence 5554
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=9.6e-44 Score=357.19 Aligned_cols=385 Identities=17% Similarity=0.139 Sum_probs=252.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCC-CCccCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLP-EGCENLM 86 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~ 86 (490)
|||+|++.|+.||++|+++||++|++|||+|+|++++.+...++.. +++|..++......... .......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 7999999999999999999999999999999999999999888876 78888775321110000 0000000
Q ss_pred CCCC---hhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCC
Q 044012 87 STST---PETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPF 163 (490)
Q Consensus 87 ~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 163 (490)
.... ......+..........+.+.+++++||+||+|.+.+++..+|+.+|||+|.+++.+......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~---------- 141 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA---------- 141 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc----------
Confidence 0000 111222333334455566666777899999999988889999999999999998765332100
Q ss_pred CCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhc---------ccEEEEcchhhcChHHHHHHH
Q 044012 164 KNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERK---------SFGVLMNSFYELEPAYADHFR 234 (490)
Q Consensus 164 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~l~~~~~~~~~ 234 (490)
. .|.+ ............. .................+.- ........ .+++....
T Consensus 142 ------~----~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~-----~~~~~~~~ 204 (401)
T cd03784 142 ------F----PPPL-GRANLRLYALLEA-ELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGF-----SPAVLPPP 204 (401)
T ss_pred ------C----CCcc-chHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEec-----CcccCCCC
Confidence 0 0000 0000000000000 00000001111111111100 00011100 12222233
Q ss_pred hhhCCceEEec-cccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccC-CHHHHHHHHHHHHHcCCc
Q 044012 235 RVTGKKAWHLG-PVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRF-SKEQTSEIAAALKESGHS 312 (490)
Q Consensus 235 ~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~ 312 (490)
..++.+..++| ++...... ...+.++..|++. .+++|||++||+... .......+++++...+.+
T Consensus 205 ~~~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~ 271 (401)
T cd03784 205 PDWPRFDLVTGYGFRDVPYN-----------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQR 271 (401)
T ss_pred CCccccCcEeCCCCCCCCCC-----------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCe
Confidence 45666777775 33222111 1135667788865 467899999998763 445677889999999999
Q ss_pred eEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccC
Q 044012 313 FIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPV 392 (490)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~ 392 (490)
+||.+|.. .. .. .. .++|+++.+|+||.++|++|++ ||||||+||++||+++|||+|++|.
T Consensus 272 ~i~~~g~~---~~----~~-~~---------~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~ 332 (401)
T cd03784 272 AILSLGWG---GL----GA-ED---------LPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPF 332 (401)
T ss_pred EEEEccCc---cc----cc-cC---------CCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCC
Confidence 99999876 21 00 00 1679999999999999999999 9999999999999999999999999
Q ss_pred cccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 044012 393 FAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGS 472 (490)
Q Consensus 393 ~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 472 (490)
..||+.||+++ +++|+|+.+... ++++++|.++|+++|+ + .+++++++++++++ ..+|.
T Consensus 333 ~~dQ~~~a~~~-~~~G~g~~l~~~-----------~~~~~~l~~al~~~l~-~-----~~~~~~~~~~~~~~---~~~g~ 391 (401)
T cd03784 333 FGDQPFWAARV-AELGAGPALDPR-----------ELTAERLAAALRRLLD-P-----PSRRRAAALLRRIR---EEDGV 391 (401)
T ss_pred CCCcHHHHHHH-HHCCCCCCCCcc-----------cCCHHHHHHHHHHHhC-H-----HHHHHHHHHHHHHH---hccCH
Confidence 99999999999 699999999876 7899999999999998 5 57777888888876 34554
Q ss_pred cHHHHHHHHHH
Q 044012 473 SCNDLKALIED 483 (490)
Q Consensus 473 ~~~~~~~~~~~ 483 (490)
..+.++++.
T Consensus 392 --~~~~~~ie~ 400 (401)
T cd03784 392 --PSAADVIER 400 (401)
T ss_pred --HHHHHHHhh
Confidence 445555553
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-43 Score=349.53 Aligned_cols=390 Identities=20% Similarity=0.248 Sum_probs=255.8
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
+|||+|+..|+.||++|+++||++|.++||+|+|++++.+.+.++++ ++.|..++.... ........
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~----~~~~~~~~ 67 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDS----ELATEDGK 67 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCC----hhhhhhhh
Confidence 58999999999999999999999999999999999999999999998 566666653211 01110000
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCCC
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKNI 166 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (490)
......... ..........++.+.+.+..+|+|+.|.....+ .+++..++|++..............
T Consensus 68 ~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------- 134 (406)
T COG1819 68 FAGVKSFRR-LLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG----------- 134 (406)
T ss_pred hhccchhHH-HhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc-----------
Confidence 000011111 233333446677778888999999999766545 8999999999886555333221100
Q ss_pred CCCCceeecCCCCCCcccCCCCCCCccccCCCchhhH-HHHHHHhhhcccEEEEc-------chhhcChHHHHHHH---h
Q 044012 167 VSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAM-FDELNNAERKSFGVLMN-------SFYELEPAYADHFR---R 235 (490)
Q Consensus 167 ~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------s~~~l~~~~~~~~~---~ 235 (490)
.+.........+......++....... ..... ................+ +-..++..+.+... .
T Consensus 135 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (406)
T COG1819 135 ----LPLPPVGIAGKLPIPLYPLPPRLVRPL-IFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGD 209 (406)
T ss_pred ----cCcccccccccccccccccChhhcccc-ccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCC
Confidence 000000000000000000000000000 00000 00000000000000000 00000000000000 1
Q ss_pred hhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEE
Q 044012 236 VTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIW 315 (490)
Q Consensus 236 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 315 (490)
.+|....++||+... ...++..|. ..++++||+|+||.... .+.++.++++++.++.++|.
T Consensus 210 ~~p~~~~~~~~~~~~----------------~~~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~ 270 (406)
T COG1819 210 RLPFIGPYIGPLLGE----------------AANELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIV 270 (406)
T ss_pred CCCCCcCcccccccc----------------ccccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEE
Confidence 234445555555433 234444553 33688999999999866 78899999999999999999
Q ss_pred EEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCccc
Q 044012 316 VVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAE 395 (490)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~D 395 (490)
.+++. .+ +... + +.|+++.+|+||..+|+++++ ||||||+||++|||++|||+|++|...|
T Consensus 271 ~~~~~---~~--~~~~-~-----------p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~D 331 (406)
T COG1819 271 SLGGA---RD--TLVN-V-----------PDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGAD 331 (406)
T ss_pred ecccc---cc--cccc-C-----------CCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcc
Confidence 99873 11 1111 2 679999999999999999999 9999999999999999999999999999
Q ss_pred ccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 044012 396 QFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCN 475 (490)
Q Consensus 396 Q~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 475 (490)
|++||.|+ |++|+|..+..+ .++++.|+++|+++|+ + +.|+++++++++.++ +.+| ..
T Consensus 332 Q~~nA~rv-e~~G~G~~l~~~-----------~l~~~~l~~av~~vL~-~----~~~~~~~~~~~~~~~---~~~g--~~ 389 (406)
T COG1819 332 QPLNAERV-EELGAGIALPFE-----------ELTEERLRAAVNEVLA-D----DSYRRAAERLAEEFK---EEDG--PA 389 (406)
T ss_pred hhHHHHHH-HHcCCceecCcc-----------cCCHHHHHHHHHHHhc-C----HHHHHHHHHHHHHhh---hccc--HH
Confidence 99999999 799999999987 8999999999999999 6 699999999999999 5666 35
Q ss_pred HHHHHHHHHHhh
Q 044012 476 DLKALIEDIRLY 487 (490)
Q Consensus 476 ~~~~~~~~~~~~ 487 (490)
.+.+++++..+.
T Consensus 390 ~~a~~le~~~~~ 401 (406)
T COG1819 390 KAADLLEEFARE 401 (406)
T ss_pred HHHHHHHHHHhc
Confidence 678888876554
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.2e-39 Score=336.51 Aligned_cols=410 Identities=27% Similarity=0.425 Sum_probs=244.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEE---EEeeCCCCcCCCCCCcc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISL---RILRFPSQEAGLPEGCE 83 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~ 83 (490)
..+++++++|++||++|+..||+.|+++||+||++++.......... .. ...+.. ...++....+.++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SK----SKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-cc----ceeeeeeecChHHhhhhhhhhccchH
Confidence 46888999999999999999999999999999999986654433221 00 001111 11111000011111111
Q ss_pred CCCCCCChhhHhhHHHHHHhhHHH-HHHH--hhcCCCcEEEEcCCCcchHHHHHHhC-CCeEEEecccHHHHHHHHhhhh
Q 044012 84 NLMSTSTPETTKKLFPALELLRPE-IEKL--FREQNPNCIVSDNLFPWTVSIAEELG-IPRLAFTGSGFFNNCVSHSLEH 159 (490)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~--l~~~~pD~VI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~ 159 (490)
... .........+...+...... .... ....++|++|+|.+..+...++.... ++...+.+....... .+.
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~g~ 154 (496)
T KOG1192|consen 80 DDD-LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLA----LGL 154 (496)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHh----cCC
Confidence 100 00001112222333222222 2222 22234999999998666666666664 777776666554432 222
Q ss_pred cCCCCCCCCCCceeecCCCCCCcccCCCCC-------CCccccCC--CchhhHHHHHHHhh----hcccEEEEcc-hhhc
Q 044012 160 HQPFKNIVSETQKFIVPGLPDQVKLSRSQL-------PDIVKCKS--TGFSAMFDELNNAE----RKSFGVLMNS-FYEL 225 (490)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l-------~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~s-~~~l 225 (490)
+.+.+.+|....+... ..+.+..+.. +....... .............. ..+..++.++ +..+
T Consensus 155 ~~~~~~~p~~~~~~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 230 (496)
T KOG1192|consen 155 PSPLSYVPSPFSLSSG----DDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFL 230 (496)
T ss_pred cCcccccCcccCcccc----ccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEE
Confidence 2222222221111100 1111111100 00000000 00000000000000 0111222233 4444
Q ss_pred ChHHHHHH-HhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCC--CeEEEEEeCCcc---cCCHHHH
Q 044012 226 EPAYADHF-RRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKP--NSVLYICFGSLT---RFSKEQT 299 (490)
Q Consensus 226 ~~~~~~~~-~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~v~vs~GS~~---~~~~~~~ 299 (490)
++..+... ..+..++++.|||+........ ......|++..+. .++|||||||+. .++.++.
T Consensus 231 n~~~~~~~~~~~~~~~v~~IG~l~~~~~~~~------------~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~ 298 (496)
T KOG1192|consen 231 NSNPLLDFEPRPLLPKVIPIGPLHVKDSKQK------------SPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQK 298 (496)
T ss_pred ccCcccCCCCCCCCCCceEECcEEecCcccc------------ccccHHHHHHHhhccCCeEEEECCcccccccCCHHHH
Confidence 43333223 3345699999999988622110 1134456555544 489999999998 6899999
Q ss_pred HHHHHHHHHc-CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhh-hccCCceeecccCChhHH
Q 044012 300 SEIAAALKES-GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLI-LEHQAIGGFLTHCGWNSI 377 (490)
Q Consensus 300 ~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~l-l~~~~~~~~ItHGG~~s~ 377 (490)
..++.++++. ++.|||++... ... . +++++..+ + +.||...+|+||.++ |.|+++++|||||||||+
T Consensus 299 ~~l~~~l~~~~~~~FiW~~~~~---~~~----~-~~~~~~~~-~--~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt 367 (496)
T KOG1192|consen 299 KELAKALESLQGVTFLWKYRPD---DSI----Y-FPEGLPNR-G--RGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNST 367 (496)
T ss_pred HHHHHHHHhCCCceEEEEecCC---cch----h-hhhcCCCC-C--cCceEEecCCCcHHHhcCCCcCcEEEECCcccHH
Confidence 9999999999 88999999865 210 0 12222211 1 568999999999998 599999999999999999
Q ss_pred HHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHH
Q 044012 378 LEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKAN 457 (490)
Q Consensus 378 ~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~ 457 (490)
.|++++|||||++|+++||+.||+++ ++.|.|..+... +++.+.+..++.++++ + ++|+++++
T Consensus 368 ~E~~~~GvP~v~~Plf~DQ~~Na~~i-~~~g~~~v~~~~-----------~~~~~~~~~~~~~il~-~----~~y~~~~~ 430 (496)
T KOG1192|consen 368 LESIYSGVPMVCVPLFGDQPLNARLL-VRHGGGGVLDKR-----------DLVSEELLEAIKEILE-N----EEYKEAAK 430 (496)
T ss_pred HHHHhcCCceecCCccccchhHHHHH-HhCCCEEEEehh-----------hcCcHHHHHHHHHHHc-C----hHHHHHHH
Confidence 99999999999999999999999999 588888888887 6777779999999999 4 59999999
Q ss_pred HHHHHHHHHHhcCCCc
Q 044012 458 HLKELAKKAVEEGGSS 473 (490)
Q Consensus 458 ~l~~~~~~~~~~~g~~ 473 (490)
++++.++ +...+.
T Consensus 431 ~l~~~~~---~~p~~~ 443 (496)
T KOG1192|consen 431 RLSEILR---DQPISP 443 (496)
T ss_pred HHHHHHH---cCCCCH
Confidence 9999988 445554
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=2.5e-27 Score=231.45 Aligned_cols=324 Identities=16% Similarity=0.147 Sum_probs=203.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
|.||+|...++.||++|.++||++|.++||+|+|++.....+.-. .+ ..++.+..++.. ++. .
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l---~~----~~g~~~~~~~~~----~l~----~-- 63 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTI---IE----KENIPYYSISSG----KLR----R-- 63 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccccc---Cc----ccCCcEEEEecc----CcC----C--
Confidence 458999999999999999999999999999999999766443211 00 125677776511 111 0
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCC
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFK 164 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (490)
......+....... ...-....++++.+||+||+...+. .+..+|..+++|+++...
T Consensus 64 -~~~~~~~~~~~~~~-~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~------------------- 122 (352)
T PRK12446 64 -YFDLKNIKDPFLVM-KGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHES------------------- 122 (352)
T ss_pred -CchHHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECC-------------------
Confidence 00001111111111 2233444668889999999987555 478899999999987421
Q ss_pred CCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhC-CceEE
Q 044012 165 NIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTG-KKAWH 243 (490)
Q Consensus 165 ~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-~~~~~ 243 (490)
..+|++.+++ . .+.++.+. .+|++ ....++ .++.+
T Consensus 123 --------n~~~g~~nr~---------------------~------~~~a~~v~-~~f~~--------~~~~~~~~k~~~ 158 (352)
T PRK12446 123 --------DMTPGLANKI---------------------A------LRFASKIF-VTFEE--------AAKHLPKEKVIY 158 (352)
T ss_pred --------CCCccHHHHH---------------------H------HHhhCEEE-EEccc--------hhhhCCCCCeEE
Confidence 1233332211 1 11112221 22211 111122 57789
Q ss_pred eccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHHcCCceEEEEccCCC
Q 044012 244 LGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSK-EQTSEIAAALKESGHSFIWVVGKILK 322 (490)
Q Consensus 244 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~ 322 (490)
+|+......... ......+.+...+++++|+|..||.....- +.+..++..+. .+.+++|.+|.+
T Consensus 159 tG~Pvr~~~~~~-----------~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~-- 224 (352)
T PRK12446 159 TGSPVREEVLKG-----------NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKG-- 224 (352)
T ss_pred ECCcCCcccccc-----------cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCc--
Confidence 996543321100 011222223333467899999999876332 22333444443 258999999876
Q ss_pred CCCchhhhccCchhHHHhhccCCCceEeeccc-h-hHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCc-----cc
Q 044012 323 TDDDQEEESWLPDGFEDEVRRNDRGFIIKGWA-P-QVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVF-----AE 395 (490)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~-p-~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~-----~D 395 (490)
+++.... . ..++.+..|+ + ..++++++|+ +|||||.+|+.|++++|+|+|++|+. .|
T Consensus 225 -----~~~~~~~-----~----~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~ 288 (352)
T PRK12446 225 -----NLDDSLQ-----N----KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGD 288 (352)
T ss_pred -----hHHHHHh-----h----cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCch
Confidence 2211010 0 1245666887 4 5679999999 99999999999999999999999985 48
Q ss_pred ccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044012 396 QFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANH 458 (490)
Q Consensus 396 Q~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~ 458 (490)
|..||..+ ++.|+|..+... +++++.|.++|.++++|+ +.|++++++
T Consensus 289 Q~~Na~~l-~~~g~~~~l~~~-----------~~~~~~l~~~l~~ll~~~----~~~~~~~~~ 335 (352)
T PRK12446 289 QILNAESF-ERQGYASVLYEE-----------DVTVNSLIKHVEELSHNN----EKYKTALKK 335 (352)
T ss_pred HHHHHHHH-HHCCCEEEcchh-----------cCCHHHHHHHHHHHHcCH----HHHHHHHHH
Confidence 99999999 599999999876 899999999999999833 355554433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=1.3e-25 Score=218.40 Aligned_cols=306 Identities=17% Similarity=0.221 Sum_probs=196.8
Q ss_pred ceEEEEcCC-CCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 8 LHVMFLPYI-APGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 8 ~~Il~~~~~-~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
|||+|...+ |.||+.++++||++| |||+|+|++.....+.+... +.+..++.... .....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~----~~~~~--- 61 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR----------FPVREIPGLGP----IQENG--- 61 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc----------cCEEEccCceE----eccCC---
Confidence 799999988 889999999999999 69999999988665555432 23444431100 00100
Q ss_pred CCCChhhHhhH---HHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCC
Q 044012 87 STSTPETTKKL---FPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPF 163 (490)
Q Consensus 87 ~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 163 (490)
........... ..........+.+++++.+||+||+| +.+.+..+|+..|||++.+........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~------------ 128 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLREFRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH------------ 128 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc------------
Confidence 11111111111 12233445666778888999999999 455577899999999999877643221
Q ss_pred CCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHh--hhcccEEEEcchhhcChHHHHHHHhhhCCce
Q 044012 164 KNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNA--ERKSFGVLMNSFYELEPAYADHFRRVTGKKA 241 (490)
Q Consensus 164 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 241 (490)
+.+.. .....+...+.+.... ...+...+.-++. .. .....++
T Consensus 129 ------------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~ 173 (318)
T PF13528_consen 129 ------------PNFWL--------------PWDQDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFFRV 173 (318)
T ss_pred ------------ccCCc--------------chhhhHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccccc
Confidence 00000 0000011222222211 2223333333322 00 1111345
Q ss_pred EEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcC-CceEEEEccC
Q 044012 242 WHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESG-HSFIWVVGKI 320 (490)
Q Consensus 242 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~ 320 (490)
.++||+..... .+... .+++.|+|++|..... .+++++++.+ +++++. |..
T Consensus 174 ~~~~p~~~~~~-------------------~~~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~ 225 (318)
T PF13528_consen 174 PFVGPIIRPEI-------------------RELPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN 225 (318)
T ss_pred cccCchhcccc-------------------cccCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC
Confidence 57777754321 11111 1455799999986432 6677777766 676666 554
Q ss_pred CCCCCchhhhccCchhHHHhhccCCCceEeeccc--hhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccC--cccc
Q 044012 321 LKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWA--PQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPV--FAEQ 396 (490)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~--p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~--~~DQ 396 (490)
.. .+. .+|+.+.++. ...++|+.|++ +|||||+||++|++++|+|+|++|. ..||
T Consensus 226 ---~~-------~~~---------~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ 284 (318)
T PF13528_consen 226 ---AA-------DPR---------PGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQ 284 (318)
T ss_pred ---cc-------ccc---------CCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchH
Confidence 10 111 6699999876 46789999999 9999999999999999999999999 7799
Q ss_pred cchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHH
Q 044012 397 FNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVV 441 (490)
Q Consensus 397 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~ 441 (490)
..||+++ +++|+|..++.. +++++.|+++|+++
T Consensus 285 ~~~a~~l-~~~G~~~~~~~~-----------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 285 EYNARKL-EELGLGIVLSQE-----------DLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHH-HHCCCeEEcccc-----------cCCHHHHHHHHhcC
Confidence 9999999 799999999877 89999999999875
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=4.2e-23 Score=199.10 Aligned_cols=325 Identities=18% Similarity=0.205 Sum_probs=204.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCC-eEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGI-QVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+..... ..++.++.++.... . ...
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~~~----~----~~~ 65 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSGGL----R----RKG 65 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEecccc----c----ccC
Confidence 57889999999999999999999999999 58888665544433332 12566777752211 1 100
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCC
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFK 164 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (490)
.. ..+...+.. -....+..++|++.+||+||.-..+. .+..+|..+|||.+..
T Consensus 66 ~~---~~~~~~~~~-~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih--------------------- 120 (357)
T COG0707 66 SL---KLLKAPFKL-LKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIH--------------------- 120 (357)
T ss_pred cH---HHHHHHHHH-HHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEE---------------------
Confidence 00 111111111 12345667788899999999976555 5788999999998873
Q ss_pred CCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceEEe
Q 044012 165 NIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWHL 244 (490)
Q Consensus 165 ~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~v 244 (490)
+...+||+.++... . .+.. ...++...+. ..-+.++..+
T Consensus 121 ------Eqn~~~G~ank~~~---------------------~------~a~~-V~~~f~~~~~-------~~~~~~~~~t 159 (357)
T COG0707 121 ------EQNAVPGLANKILS---------------------K------FAKK-VASAFPKLEA-------GVKPENVVVT 159 (357)
T ss_pred ------ecCCCcchhHHHhH---------------------H------hhce-eeeccccccc-------cCCCCceEEe
Confidence 33445555542210 0 0011 1111111000 0011357777
Q ss_pred c-cccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHH-HHHHHHc--CCceEEEEccC
Q 044012 245 G-PVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEI-AAALKES--GHSFIWVVGKI 320 (490)
Q Consensus 245 G-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~-~~al~~~--~~~~i~~~~~~ 320 (490)
| |+...-.. .+....++.... ++++|+|.-||.+... ++.+ .+++..+ ..++++.+|..
T Consensus 160 G~Pvr~~~~~-------------~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~---ln~~v~~~~~~l~~~~~v~~~~G~~ 222 (357)
T COG0707 160 GIPVRPEFEE-------------LPAAEVRKDGRL-DKKTILVTGGSQGAKA---LNDLVPEALAKLANRIQVIHQTGKN 222 (357)
T ss_pred cCcccHHhhc-------------cchhhhhhhccC-CCcEEEEECCcchhHH---HHHHHHHHHHHhhhCeEEEEEcCcc
Confidence 7 54332111 011111222222 5779999999987622 3332 2333333 57888888876
Q ss_pred CCCCCchhhhccCchhHHHhhccCCCc-eEeeccch-hHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCc----c
Q 044012 321 LKTDDDQEEESWLPDGFEDEVRRNDRG-FIIKGWAP-QVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVF----A 394 (490)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~~~~~~n-v~~~~~~p-~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~----~ 394 (490)
. ++. ...... ..+ +.+..|+. ...+++.+|+ +||++|.+|+.|++++|+|++.+|.- .
T Consensus 223 ---~----~~~-----~~~~~~--~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~ 286 (357)
T COG0707 223 ---D----LEE-----LKSAYN--ELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADG 286 (357)
T ss_pred ---h----HHH-----HHHHHh--hcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccc
Confidence 2 111 111111 123 88888886 5779999999 99999999999999999999999983 3
Q ss_pred cccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044012 395 EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHL 459 (490)
Q Consensus 395 DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l 459 (490)
||..||+.+ ++.|.|..+... ++|.++|.+.|.++++ +.++...|+++++.+
T Consensus 287 ~Q~~NA~~l-~~~gaa~~i~~~-----------~lt~~~l~~~i~~l~~-~~~~l~~m~~~a~~~ 338 (357)
T COG0707 287 HQEYNAKFL-EKAGAALVIRQS-----------ELTPEKLAELILRLLS-NPEKLKAMAENAKKL 338 (357)
T ss_pred hHHHHHHHH-HhCCCEEEeccc-----------cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhc
Confidence 899999999 699999999887 8999999999999998 333334444444443
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=6.7e-23 Score=198.96 Aligned_cols=303 Identities=16% Similarity=0.172 Sum_probs=175.5
Q ss_pred eEEEEcCC-CCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceE-EEEeeCCCCcCCCCCCccCCC
Q 044012 9 HVMFLPYI-APGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREIS-LRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 9 ~Il~~~~~-~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 86 (490)
||+|...+ +.||+.|.++||++|.+ ||+|+|+++......+... ++. +..+|..... ...+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~--~~~~----- 63 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLK--GEDG----- 63 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEe--ecCC-----
Confidence 67887766 55999999999999999 9999999987744444443 232 2222210000 0000
Q ss_pred CCCChhhHhhHH---HHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCC
Q 044012 87 STSTPETTKKLF---PALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPF 163 (490)
Q Consensus 87 ~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 163 (490)
.. +....+. ...........+++++.+||+||+| +.+.+..+|+.+|||++.+..+....
T Consensus 64 ~~---~~~~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~------------- 126 (321)
T TIGR00661 64 KV---NIVKTLRNKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR------------- 126 (321)
T ss_pred cC---cHHHHHHhhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-------------
Confidence 01 1111111 0101223345678888999999999 66667889999999999876531100
Q ss_pred CCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHh-hhcccEEEEcchhhcChHHHHHHHhhhCCceE
Q 044012 164 KNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNA-ERKSFGVLMNSFYELEPAYADHFRRVTGKKAW 242 (490)
Q Consensus 164 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~ 242 (490)
.|+... . ........... ...+..+....+..... ..|+...
T Consensus 127 -----------~~~~~~-----------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~p~~~~ 169 (321)
T TIGR00661 127 -----------YPLKTD-----------L-------IVYPTMAALRIFNERCERFIVPDYPFPYT--------ICPKIIK 169 (321)
T ss_pred -----------CCcccc-----------h-------hHHHHHHHHHHhccccceEeeecCCCCCC--------CCccccc
Confidence 010000 0 11111111111 11222222222211110 0000000
Q ss_pred -EeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCC-ceEEEEccC
Q 044012 243 -HLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGH-SFIWVVGKI 320 (490)
Q Consensus 243 -~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~ 320 (490)
.-+|. .+....++... +++.|+|.+||.. ...+++++++.+. .+|+ +..
T Consensus 170 ~~~~~~-------------------~~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~~~~i~--~~~ 220 (321)
T TIGR00661 170 NMEGPL-------------------IRYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIANVKFVC--YSY 220 (321)
T ss_pred cCCCcc-------------------cchhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCCeEEEE--eCC
Confidence 00111 11222233322 2445777777742 2455777877653 4442 222
Q ss_pred CCCCCchhhhccCchhHHHhhccCCCceEeeccch--hHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcc--cc
Q 044012 321 LKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAP--QVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFA--EQ 396 (490)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p--~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~--DQ 396 (490)
.. ..+. .++|+.+.+|.| ..+.|+.|++ +|||||++|++|++++|+|++++|... ||
T Consensus 221 ---~~-------~~~~-------~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ 281 (321)
T TIGR00661 221 ---EV-------AKNS-------YNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQ 281 (321)
T ss_pred ---CC-------Cccc-------cCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccH
Confidence 10 0000 045899999987 5678889998 999999999999999999999999965 89
Q ss_pred cchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccC
Q 044012 397 FNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDND 445 (490)
Q Consensus 397 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~ 445 (490)
..||+.+ ++.|+|+.++.. ++ ++.+++.++++|+
T Consensus 282 ~~na~~l-~~~g~~~~l~~~-----------~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 282 GNNAVKL-EDLGCGIALEYK-----------EL---RLLEAILDIRNMK 315 (321)
T ss_pred HHHHHHH-HHCCCEEEcChh-----------hH---HHHHHHHhccccc
Confidence 9999999 599999999776 55 6777777777743
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=4.4e-19 Score=175.49 Aligned_cols=325 Identities=15% Similarity=0.119 Sum_probs=193.8
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch--hhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA--RRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
||||+|...+..||...++.|+++|.++||+|++++.+... ..++. .+++++.++.+.. ...
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~---------~g~~~~~~~~~~~----~~~--- 64 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK---------AGIEFHFIPSGGL----RRK--- 64 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc---------CCCcEEEEeccCc----CCC---
Confidence 58999999888899999999999999999999999986521 11111 2566666652210 000
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC-c-chHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCC
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF-P-WTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQP 162 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~-~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (490)
........... .......+.+++++.+||+|++.... . .+..++...++|+|......
T Consensus 65 ----~~~~~l~~~~~-~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--------------- 124 (357)
T PRK00726 65 ----GSLANLKAPFK-LLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA--------------- 124 (357)
T ss_pred ----ChHHHHHHHHH-HHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC---------------
Confidence 00011111111 12334556677888899999999633 2 45567888899988531100
Q ss_pred CCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceE
Q 044012 163 FKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAW 242 (490)
Q Consensus 163 ~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~ 242 (490)
.++ . ..++. ...++.+...+-.. +.. ..+.++.
T Consensus 125 ------------~~~--------------~-------~~r~~------~~~~d~ii~~~~~~-----~~~---~~~~~i~ 157 (357)
T PRK00726 125 ------------VPG--------------L-------ANKLL------ARFAKKVATAFPGA-----FPE---FFKPKAV 157 (357)
T ss_pred ------------Ccc--------------H-------HHHHH------HHHhchheECchhh-----hhc---cCCCCEE
Confidence 000 0 00000 11122222222110 101 2236788
Q ss_pred EeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHH-HHHHHHHHHcCC--ceEEEEcc
Q 044012 243 HLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQT-SEIAAALKESGH--SFIWVVGK 319 (490)
Q Consensus 243 ~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~-~~~~~al~~~~~--~~i~~~~~ 319 (490)
++|......... +.....-+...++..+|++..|+.. .... ..+.+|+.++.. .+++.+|.
T Consensus 158 vi~n~v~~~~~~-------------~~~~~~~~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~ 221 (357)
T PRK00726 158 VTGNPVREEILA-------------LAAPPARLAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGK 221 (357)
T ss_pred EECCCCChHhhc-------------ccchhhhccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCC
Confidence 888544321100 0000001121224556766555532 2223 333466666443 45666676
Q ss_pred CCCCCCchhhhccCchhHHHhhccCCCceEeeccc-hhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccC----cc
Q 044012 320 ILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWA-PQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPV----FA 394 (490)
Q Consensus 320 ~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~-p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~----~~ 394 (490)
. . .+ .+.+... ..-++.+.+|+ +..++++.+++ +|+|+|.+++.||+++|+|+|++|. .+
T Consensus 222 g---~----~~-----~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~ 286 (357)
T PRK00726 222 G---D----LE-----EVRAAYA-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADD 286 (357)
T ss_pred C---c----HH-----HHHHHhh-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcC
Confidence 5 2 11 1111111 12248888998 46789999999 9999999999999999999999997 46
Q ss_pred cccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 044012 395 EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKEL 462 (490)
Q Consensus 395 DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~ 462 (490)
||..|+..+ .+.|.|..+... +++++.|.++|.++++ + +.++++..+-+.+
T Consensus 287 ~~~~~~~~i-~~~~~g~~~~~~-----------~~~~~~l~~~i~~ll~-~----~~~~~~~~~~~~~ 337 (357)
T PRK00726 287 HQTANARAL-VDAGAALLIPQS-----------DLTPEKLAEKLLELLS-D----PERLEAMAEAARA 337 (357)
T ss_pred cHHHHHHHH-HHCCCEEEEEcc-----------cCCHHHHHHHHHHHHc-C----HHHHHHHHHHHHh
Confidence 899999999 599999999876 6789999999999998 5 3555444443333
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=1.1e-17 Score=165.07 Aligned_cols=315 Identities=16% Similarity=0.151 Sum_probs=186.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMST 88 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (490)
||++...++.||+.....|+++|.++||+|++++....... ... ...++++..++.+.. ...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~------~~~~~~~~~~~~~~~----~~~------- 62 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLV------PKAGIPLHTIPVGGL----RRK------- 62 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcc------cccCCceEEEEecCc----CCC-------
Confidence 58899989999999999999999999999999987543211 100 012466666653211 000
Q ss_pred CChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCCC
Q 044012 89 STPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKNI 166 (490)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (490)
.....+..... .-.....+.+++++.+||+|++..... .+..++...++|++......
T Consensus 63 ~~~~~~~~~~~-~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------------------- 122 (350)
T cd03785 63 GSLKKLKAPFK-LLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------------------- 122 (350)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-------------------
Confidence 00011111111 112334566778888999999876332 45678888999987531100
Q ss_pred CCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceEEecc
Q 044012 167 VSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWHLGP 246 (490)
Q Consensus 167 ~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp 246 (490)
.++ . ..+. ..+.++.++..+-...+ . ..+.++.++|.
T Consensus 123 --------~~~--------------~-----------~~~~--~~~~~~~vi~~s~~~~~-----~---~~~~~~~~i~n 159 (350)
T cd03785 123 --------VPG--------------L-----------ANRL--LARFADRVALSFPETAK-----Y---FPKDKAVVTGN 159 (350)
T ss_pred --------Ccc--------------H-----------HHHH--HHHhhCEEEEcchhhhh-----c---CCCCcEEEECC
Confidence 000 0 0000 11123444443311111 1 12356777775
Q ss_pred ccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCC-HHHHHHHHHHHHHcCCceEEEEccCCCCCC
Q 044012 247 VSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFS-KEQTSEIAAALKESGHSFIWVVGKILKTDD 325 (490)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 325 (490)
........ .... .+.+...+++.+|++..|+..... .+.+..++..+.+.+..+++.+|.. ..
T Consensus 160 ~v~~~~~~------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g---~~ 223 (350)
T cd03785 160 PVREEILA------------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG---DL 223 (350)
T ss_pred CCchHHhh------------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc---cH
Confidence 43321100 0011 222222234556666666654211 1112233333433345566666654 11
Q ss_pred chhhhccCchhHHHhhccCCCceEeeccc-hhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccC----cccccchH
Q 044012 326 DQEEESWLPDGFEDEVRRNDRGFIIKGWA-PQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPV----FAEQFNNE 400 (490)
Q Consensus 326 ~~~~~~~~p~~~~~~~~~~~~nv~~~~~~-p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~----~~DQ~~na 400 (490)
+.+.+......+|+.+.+|+ +...+|+.+++ +|+++|.+|+.||+.+|+|+|++|. ..+|..|+
T Consensus 224 ---------~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~ 292 (350)
T cd03785 224 ---------EEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANA 292 (350)
T ss_pred ---------HHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhH
Confidence 12222222113589999998 56789999999 9999999999999999999999986 35788999
Q ss_pred HHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 401 KLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 401 ~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
..++ +.|.|..++.. +.+.++|.++|+++++
T Consensus 293 ~~l~-~~g~g~~v~~~-----------~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 293 RALV-KAGAAVLIPQE-----------ELTPERLAAALLELLS 323 (350)
T ss_pred HHHH-hCCCEEEEecC-----------CCCHHHHHHHHHHHhc
Confidence 9994 89999999764 5789999999999998
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.77 E-value=6.6e-17 Score=148.49 Aligned_cols=342 Identities=16% Similarity=0.128 Sum_probs=200.6
Q ss_pred CCcceEEEEcCC--CCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 5 NQKLHVMFLPYI--APGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 5 ~~~~~Il~~~~~--~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
.+++||+|.+.- +.||+..++.||+.|.+. |.+|++++......-+.- ..+++++.+|.-... ..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~k~---~~ 75 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLIKG---DN 75 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceEec---CC
Confidence 567899999966 779999999999999998 999999998654444433 247888888732211 11
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhc
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHH 160 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 160 (490)
+......... ...+..+.-..-+....+..+||++|+|.+-+.. ..+.+ |.. .++.
T Consensus 76 G~~~~~d~~~-----~l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Gl--r~EL~--ptL-------------~yl~-- 131 (400)
T COG4671 76 GEYGLVDLDG-----DLEETKKLRSQLILSTAETFKPDIFIVDKFPFGL--RFELL--PTL-------------EYLK-- 131 (400)
T ss_pred CceeeeecCC-----CHHHHHHHHHHHHHHHHHhcCCCEEEEeccccch--hhhhh--HHH-------------HHHh--
Confidence 1111111111 1222222334455666777899999999776541 11111 000 0000
Q ss_pred CCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcCh--HHHHHHHhhhC
Q 044012 161 QPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEP--AYADHFRRVTG 238 (490)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~--~~~~~~~~~~~ 238 (490)
. . + .+..+..+.+.+. .+....-.+....+....+.-+.+++..-+.+-. ..++.... ..
T Consensus 132 ---------~-~----~--t~~vL~lr~i~D~-p~~~~~~w~~~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~-i~ 193 (400)
T COG4671 132 ---------T-T----G--TRLVLGLRSIRDI-PQELEADWRRAETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPA-IR 193 (400)
T ss_pred ---------h-c----C--CcceeehHhhhhc-hhhhccchhhhHHHHHHHHhheEEEEecCccccChhhcCCccHh-hh
Confidence 0 0 0 0000111111111 0000000001111112222234455444322221 11222222 23
Q ss_pred CceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHH-cCCc--eEE
Q 044012 239 KKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKE-SGHS--FIW 315 (490)
Q Consensus 239 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~i~ 315 (490)
.++.|+|.+...-+.. . .+ +... +++..|+||-|.-. ...+.+...++|-.- .+.+ .++
T Consensus 194 ~k~~ytG~vq~~~~~~-~----------~p-----~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~i 255 (400)
T COG4671 194 AKMRYTGFVQRSLPHL-P----------LP-----PHEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLI 255 (400)
T ss_pred hheeEeEEeeccCcCC-C----------CC-----CcCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEE
Confidence 7889999882210100 0 01 1111 34556999988643 344566666666554 3444 777
Q ss_pred EEccCCCCCCchhhhccCchhHHHhh-ccCC--CceEeeccch-hHhhhccCCceeecccCChhHHHHHHHhCCcEeecc
Q 044012 316 VVGKILKTDDDQEEESWLPDGFEDEV-RRND--RGFIIKGWAP-QVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWP 391 (490)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~--~nv~~~~~~p-~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P 391 (490)
++|.. +|.....++ ..++ +++.+..|-. ...+++.++. +|+-||+||++|.|.+|+|.|++|
T Consensus 256 vtGP~------------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivP 321 (400)
T COG4671 256 VTGPF------------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVP 321 (400)
T ss_pred EeCCC------------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEec
Confidence 77766 664432222 1123 7899999976 4779988888 999999999999999999999999
Q ss_pred Cc---ccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 392 VF---AEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 392 ~~---~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
.. .||-.-|+|+ +++|+.-++-.+ ++|+..|.++|...++
T Consensus 322 r~~p~eEQliRA~Rl-~~LGL~dvL~pe-----------~lt~~~La~al~~~l~ 364 (400)
T COG4671 322 RAAPREEQLIRAQRL-EELGLVDVLLPE-----------NLTPQNLADALKAALA 364 (400)
T ss_pred cCCCcHHHHHHHHHH-HhcCcceeeCcc-----------cCChHHHHHHHHhccc
Confidence 85 4999999999 699999999887 8999999999999987
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.76 E-value=1.4e-16 Score=158.04 Aligned_cols=351 Identities=14% Similarity=0.098 Sum_probs=198.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCC--ceEEEEeeCCCCcCCCCCCccCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGR--EISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
.||+|...++.||++|. +|+++|.++|++|+|++.... .+++. |. .+.+..++ .
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~-------g~~~~~~~~~l~--------------v 61 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAE-------GCEVLYSMEELS--------------V 61 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhC-------cCccccChHHhh--------------h
Confidence 58999999999999999 999999999999999996422 33333 10 12222222 0
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEE-cCCCcchHH--HHHHhCCCeEEEecccHHHHHHHHhhhhcCC
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVS-DNLFPWTVS--IAEELGIPRLAFTGSGFFNNCVSHSLEHHQP 162 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~-D~~~~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (490)
.++ ...+..+ ........+..+++++.+||+||. |+-.+.... .|+.+|||++...+.....
T Consensus 62 ~G~--~~~l~~~-~~~~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa------------ 126 (385)
T TIGR00215 62 MGL--REVLGRL-GRLLKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA------------ 126 (385)
T ss_pred ccH--HHHHHHH-HHHHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh------------
Confidence 000 0111111 112234457788888999999996 432223233 8899999988653211000
Q ss_pred CCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceE
Q 044012 163 FKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAW 242 (490)
Q Consensus 163 ~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~ 242 (490)
|... ..+.+.+ .++.++.. + +.+... +.. .+.+..
T Consensus 127 ----------------------w~~~-----------~~r~l~~------~~d~v~~~-~-~~e~~~---~~~-~g~~~~ 161 (385)
T TIGR00215 127 ----------------------WRKW-----------RAKKIEK------ATDFLLAI-L-PFEKAF---YQK-KNVPCR 161 (385)
T ss_pred ----------------------cCcc-----------hHHHHHH------HHhHhhcc-C-CCcHHH---HHh-cCCCEE
Confidence 0000 0001111 11111111 1 111121 221 234567
Q ss_pred EeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc-----CCceEEEE
Q 044012 243 HLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES-----GHSFIWVV 317 (490)
Q Consensus 243 ~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~ 317 (490)
++|.-..+..... .....+..+-+.-.+++++|.+--||....-......+++++..+ +.++++..
T Consensus 162 ~vGnPv~~~~~~~---------~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~ 232 (385)
T TIGR00215 162 FVGHPLLDAIPLY---------KPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPV 232 (385)
T ss_pred EECCchhhhcccc---------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 7883222111000 001122222223334567888878886542123455566665543 34565554
Q ss_pred ccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeec----cCc
Q 044012 318 GKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTW----PVF 393 (490)
Q Consensus 318 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~----P~~ 393 (490)
+.. .....++ .+.+... ....+.+..+ ...++++.+|+ +|+-+|..|+ |++++|+|+|++ |+.
T Consensus 233 ~~~---~~~~~~~-----~~~~~~~-~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~ 299 (385)
T TIGR00215 233 VNF---KRRLQFE-----QIKAEYG-PDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLT 299 (385)
T ss_pred CCc---hhHHHHH-----HHHHHhC-CCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHH
Confidence 433 1100111 1111111 0113333322 34569999999 9999999988 999999999999 874
Q ss_pred c---------cccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCc----HHHHHHHHHHHHHH
Q 044012 394 A---------EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDD----QEAVKMRKKANHLK 460 (490)
Q Consensus 394 ~---------DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~----~~~~~~~~~a~~l~ 460 (490)
. .|..|++.++ ..|+...+... ++|++.|.+.+.++|+ |. ++.+.+++..+++.
T Consensus 300 ~~~~~~~~~~~~~~~~nil~-~~~~~pel~q~-----------~~~~~~l~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 300 FLIARRLVKTDYISLPNILA-NRLLVPELLQE-----------ECTPHPLAIALLLLLE-NGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HHHHHHHHcCCeeeccHHhc-CCccchhhcCC-----------CCCHHHHHHHHHHHhc-CCcccHHHHHHHHHHHHHHH
Confidence 2 3889999995 99999888766 7999999999999998 55 55567777777777
Q ss_pred HHHHHHHhcCCCcHHHHHHHH
Q 044012 461 ELAKKAVEEGGSSCNDLKALI 481 (490)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~ 481 (490)
+++. ++|.+....+.++
T Consensus 367 ~~l~----~~~~~~~~a~~i~ 383 (385)
T TIGR00215 367 QRIY----CNADSERAAQAVL 383 (385)
T ss_pred HHhc----CCCHHHHHHHHHh
Confidence 7764 5566555444443
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.75 E-value=1.5e-15 Score=149.81 Aligned_cols=309 Identities=16% Similarity=0.172 Sum_probs=171.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
|||+|++.+..||+.....||++|.++||+|++++.+..... ... . ..+++++.++... ...
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~-~~~-~-----~~g~~~~~i~~~~--------~~~--- 62 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK-RLV-P-----KAGIEFYFIPVGG--------LRR--- 62 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh-ccc-c-----cCCCceEEEeccC--------cCC---
Confidence 489999999999999888999999999999999986442110 000 0 1256666664211 000
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCC
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKN 165 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (490)
......+...... ......+.+++++.+||+|++..... .+..++..+++|.+......
T Consensus 63 ~~~~~~l~~~~~~-~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------ 123 (348)
T TIGR01133 63 KGSFRLIKTPLKL-LKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA------------------ 123 (348)
T ss_pred CChHHHHHHHHHH-HHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC------------------
Confidence 0000111111111 12344667788889999999986433 35557888899987421000
Q ss_pred CCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceEEec
Q 044012 166 IVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWHLG 245 (490)
Q Consensus 166 ~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 245 (490)
.+ .. ..+. ..+.++.++..+-.. . ... ...++|
T Consensus 124 ---------~~--------------~~-------~~~~------~~~~~d~ii~~~~~~-~--------~~~--~~~~i~ 156 (348)
T TIGR01133 124 ---------VP--------------GL-------TNKL------LSRFAKKVLISFPGA-K--------DHF--EAVLVG 156 (348)
T ss_pred ---------Cc--------------cH-------HHHH------HHHHhCeeEECchhH-h--------hcC--CceEEc
Confidence 00 00 0000 012233333332110 0 000 124555
Q ss_pred cccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHH---cCCceEEEEccCCC
Q 044012 246 PVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKE---SGHSFIWVVGKILK 322 (490)
Q Consensus 246 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~ 322 (490)
.-....... . +. ..+.+...+++.+|.+..|+... ......+.++++. .+.++++..|..
T Consensus 157 n~v~~~~~~--------~----~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~-- 219 (348)
T TIGR01133 157 NPVRQEIRS--------L----PV-PRERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKN-- 219 (348)
T ss_pred CCcCHHHhc--------c----cc-hhhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcc--
Confidence 322111000 0 00 01122222234455444455432 2212223345543 345666555543
Q ss_pred CCCchhhhccCchhHHHhhccCCCc-eEeeccc--hhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCc---ccc
Q 044012 323 TDDDQEEESWLPDGFEDEVRRNDRG-FIIKGWA--PQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVF---AEQ 396 (490)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~n-v~~~~~~--p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~---~DQ 396 (490)
+.+ .+..... ..+ ..++.|. +..++|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|
T Consensus 220 -----~~~-----~l~~~~~--~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~ 285 (348)
T TIGR01133 220 -----DLE-----KVKNVYQ--ELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQ 285 (348)
T ss_pred -----hHH-----HHHHHHh--hCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccch
Confidence 111 1222111 111 1222333 56789999999 99999988999999999999999873 467
Q ss_pred cchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 397 FNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 397 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
..|+..+ +..|.|..++.. +.++++|.++|.++++
T Consensus 286 ~~~~~~i-~~~~~G~~~~~~-----------~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 286 YYNAKFL-EDLGAGLVIRQK-----------ELLPEKLLEALLKLLL 320 (348)
T ss_pred hhHHHHH-HHCCCEEEEecc-----------cCCHHHHHHHHHHHHc
Confidence 8899999 599999988765 5789999999999998
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.72 E-value=3e-15 Score=149.32 Aligned_cols=134 Identities=16% Similarity=0.243 Sum_probs=96.9
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHHc-CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh-H
Q 044012 280 PNSVLYICFGSLTRFSKEQTSEIAAALKES-GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ-V 357 (490)
Q Consensus 280 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~-~ 357 (490)
++++|++..|+.... ..+..+++++.+. +.++++..|.+ . ... +.+.+.....++|+.+.+|+++ .
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~---~---~~~----~~l~~~~~~~~~~v~~~g~~~~~~ 268 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN---E---ALK----QSLEDLQETNPDALKVFGYVENID 268 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC---H---HHH----HHHHHHHhcCCCcEEEEechhhHH
Confidence 456777777876532 2456677777653 56777776644 1 111 1222222212458999999986 5
Q ss_pred hhhccCCceeecccCChhHHHHHHHhCCcEeec-cCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHH
Q 044012 358 LILEHQAIGGFLTHCGWNSILEGVSAGVPMVTW-PVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKN 436 (490)
Q Consensus 358 ~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~-P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~ 436 (490)
++++.+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ +..|+|+.. -+.++|.+
T Consensus 269 ~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~---------------~~~~~l~~ 330 (380)
T PRK13609 269 ELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI---------------RDDEEVFA 330 (380)
T ss_pred HHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE---------------CCHHHHHH
Confidence 79999999 99999989999999999999985 6777788899999 588888754 25689999
Q ss_pred HHHHHhc
Q 044012 437 AICVVMD 443 (490)
Q Consensus 437 ~i~~~l~ 443 (490)
+|.++++
T Consensus 331 ~i~~ll~ 337 (380)
T PRK13609 331 KTEALLQ 337 (380)
T ss_pred HHHHHHC
Confidence 9999998
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.71 E-value=7.8e-16 Score=145.68 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=78.1
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHH--cCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh-Hh
Q 044012 282 SVLYICFGSLTRFSKEQTSEIAAALKE--SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ-VL 358 (490)
Q Consensus 282 ~~v~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~-~~ 358 (490)
+.|+|++|.... ......+++++.+ .+.++.+++|.. .. ..+.+...... .+|+.+..++++ ..
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~---~~-------~~~~l~~~~~~-~~~i~~~~~~~~m~~ 237 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSS---NP-------NLDELKKFAKE-YPNIILFIDVENMAE 237 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCC---Cc-------CHHHHHHHHHh-CCCEEEEeCHHHHHH
Confidence 468999985432 2344566777766 356788888876 21 11122222211 458999999986 58
Q ss_pred hhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHH
Q 044012 359 ILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKL 402 (490)
Q Consensus 359 ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~r 402 (490)
+|+.+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 238 lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 238 LMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 9999999 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.67 E-value=1.3e-14 Score=144.73 Aligned_cols=353 Identities=13% Similarity=0.091 Sum_probs=175.3
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
+|||+|...++.||+.|.. ++++|.++++++.+++.... ..++... ...+.++.++. .
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~l~~--------------~ 58 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC-----ESLFDMEELAV--------------M 58 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC-----ccccCHHHhhh--------------c
Confidence 4799999999999999998 99999999888888875331 2332200 00122222210 0
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCC-Ccch--HHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCC
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNL-FPWT--VSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPF 163 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~-~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 163 (490)
.. ...+. ...........+.+++++.+||+|+.-.. ..+. ...|...|||.+...... .+
T Consensus 59 g~--~~~~~-~~~~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~--~~------------ 121 (380)
T PRK00025 59 GL--VEVLP-RLPRLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS--VW------------ 121 (380)
T ss_pred cH--HHHHH-HHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc--hh------------
Confidence 00 01111 11112234567788888999999886432 2333 334677899987641110 00
Q ss_pred CCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceEE
Q 044012 164 KNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWH 243 (490)
Q Consensus 164 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~ 243 (490)
.+ ... ....+ .+.++.++..+-. +.. .+.. .+.++.+
T Consensus 122 --------------------~~---~~~-----------~~~~~---~~~~d~i~~~~~~--~~~---~~~~-~g~~~~~ 158 (380)
T PRK00025 122 --------------------AW---RQG-----------RAFKI---AKATDHVLALFPF--EAA---FYDK-LGVPVTF 158 (380)
T ss_pred --------------------hc---Cch-----------HHHHH---HHHHhhheeCCcc--CHH---HHHh-cCCCeEE
Confidence 00 000 00111 1122333332211 111 1211 2234777
Q ss_pred eccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc-----CCceEEEEc
Q 044012 244 LGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES-----GHSFIWVVG 318 (490)
Q Consensus 244 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~ 318 (490)
+|-........ .....+..+.+...+++++|.+..||...........+++++..+ +.++++..+
T Consensus 159 ~G~p~~~~~~~----------~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~ 228 (380)
T PRK00025 159 VGHPLADAIPL----------LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLV 228 (380)
T ss_pred ECcCHHHhccc----------ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 77322111000 000122222233223455666666664432122244555555432 356777655
Q ss_pred cCCCCCCchhhhccCchhHHHhhccC-CCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcc---
Q 044012 319 KILKTDDDQEEESWLPDGFEDEVRRN-DRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFA--- 394 (490)
Q Consensus 319 ~~~~~~~~~~~~~~~p~~~~~~~~~~-~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~--- 394 (490)
.. ... +.+.+..... .-++.+.. -.-..+++.+|+ +|+-+|.+++ |++++|+|+|.+|...
T Consensus 229 ~~---~~~--------~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~ 293 (380)
T PRK00025 229 NP---KRR--------EQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLT 293 (380)
T ss_pred Ch---hhH--------HHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHH
Confidence 33 111 1122222110 11333322 124678999999 9999999888 9999999999995432
Q ss_pred -----cccch-----HHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 395 -----EQFNN-----EKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 395 -----DQ~~n-----a~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
+|..| +..+ ...|++..+... ..++++|.++|.++++ |.+..++|+++++.+.+.+
T Consensus 294 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-----------~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~- 359 (380)
T PRK00025 294 FWIAKRLVKVPYVSLPNLL-AGRELVPELLQE-----------EATPEKLARALLPLLA-DGARRQALLEGFTELHQQL- 359 (380)
T ss_pred HHHHHHHHcCCeeehHHHh-cCCCcchhhcCC-----------CCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHh-
Confidence 22222 2334 244444444443 6789999999999999 4222233444443333332
Q ss_pred HHHhcCCCcHHHHHHHHHHH
Q 044012 465 KAVEEGGSSCNDLKALIEDI 484 (490)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~~~ 484 (490)
..+++...++.+.+.+
T Consensus 360 ----~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 360 ----RCGADERAAQAVLELL 375 (380)
T ss_pred ----CCCHHHHHHHHHHHHh
Confidence 3444444444444433
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.64 E-value=1.6e-14 Score=144.11 Aligned_cols=148 Identities=11% Similarity=0.251 Sum_probs=102.6
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHH--cCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh
Q 044012 279 KPNSVLYICFGSLTRFSKEQTSEIAAALKE--SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ 356 (490)
Q Consensus 279 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~ 356 (490)
+++++|++..|+... ...+..+++++.+ .+.++++..|.+ .+ +. +.+.+... ..+++.+.+|+++
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~---~~---l~----~~l~~~~~-~~~~v~~~G~~~~ 266 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS---KE---LK----RSLTAKFK-SNENVLILGYTKH 266 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC---HH---HH----HHHHHHhc-cCCCeEEEeccch
Confidence 346678888888762 2345556655433 346777776654 11 10 11221111 1347889999964
Q ss_pred -HhhhccCCceeecccCChhHHHHHHHhCCcEeec-cCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHH
Q 044012 357 -VLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTW-PVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNI 434 (490)
Q Consensus 357 -~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~-P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l 434 (490)
.++++.+|+ +|+..|..|+.||+++|+|+|+. |..++|..|+..+ ++.|+|+.. -+.+++
T Consensus 267 ~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~---------------~~~~~l 328 (391)
T PRK13608 267 MNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA---------------DTPEEA 328 (391)
T ss_pred HHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe---------------CCHHHH
Confidence 579999999 99998888999999999999998 7777788999999 699999764 267889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHH
Q 044012 435 KNAICVVMDNDDQEAVKMRKKANH 458 (490)
Q Consensus 435 ~~~i~~~l~n~~~~~~~~~~~a~~ 458 (490)
.++|.++++ +.+....|++++++
T Consensus 329 ~~~i~~ll~-~~~~~~~m~~~~~~ 351 (391)
T PRK13608 329 IKIVASLTN-GNEQLTNMISTMEQ 351 (391)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHH
Confidence 999999998 43333344444443
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.56 E-value=5.5e-16 Score=135.67 Aligned_cols=135 Identities=18% Similarity=0.219 Sum_probs=97.6
Q ss_pred EEEEEeCCcccCC-HHHHHHHHHHHHH--cCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccch-hHh
Q 044012 283 VLYICFGSLTRFS-KEQTSEIAAALKE--SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAP-QVL 358 (490)
Q Consensus 283 ~v~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p-~~~ 358 (490)
+|+|+.||..... .+.+..++..+.. ...++++.+|.. .. ...... ..+...++.+.+|++ ..+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~---~~----~~~~~~-----~~~~~~~v~~~~~~~~m~~ 68 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKN---NY----EELKIK-----VENFNPNVKVFGFVDNMAE 68 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTC---EC----HHHCCC-----HCCTTCCCEEECSSSSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCC---cH----HHHHHH-----HhccCCcEEEEechhhHHH
Confidence 4899999876421 1112223333333 358999999876 21 110110 111125899999999 888
Q ss_pred hhccCCceeecccCChhHHHHHHHhCCcEeeccCcc----cccchHHHHHHhhccceeeccccccccccCCCCccchhHH
Q 044012 359 ILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFA----EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNI 434 (490)
Q Consensus 359 ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~----DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l 434 (490)
+++.+|+ +|||||.||++|++++|+|+|++|... ||..||..+ ++.|+|..+... ..+.++|
T Consensus 69 ~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~~-----------~~~~~~L 134 (167)
T PF04101_consen 69 LMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDES-----------ELNPEEL 134 (167)
T ss_dssp HHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSECC-----------C-SCCCH
T ss_pred HHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCcc-----------cCCHHHH
Confidence 9999999 999999999999999999999999988 999999999 599999999887 7889999
Q ss_pred HHHHHHHhc
Q 044012 435 KNAICVVMD 443 (490)
Q Consensus 435 ~~~i~~~l~ 443 (490)
.++|.++++
T Consensus 135 ~~~i~~l~~ 143 (167)
T PF04101_consen 135 AEAIEELLS 143 (167)
T ss_dssp HHHHHCHCC
T ss_pred HHHHHHHHc
Confidence 999999998
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.53 E-value=5e-12 Score=125.65 Aligned_cols=329 Identities=14% Similarity=0.037 Sum_probs=174.7
Q ss_pred CCCCChHHHHHHHHHHHH--CCCeEE---EEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCC
Q 044012 16 IAPGHMVPMVDMARLFAA--NGIQVT---IILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTST 90 (490)
Q Consensus 16 ~~~GHi~p~l~LA~~L~~--rGh~Vt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 90 (490)
-++|-=.-.++||++|.+ .|++|. ++++....+ +..-+ ..+ .+..+ +.+. +..
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~~ip----~~g-~~~~~---------~sgg-----~~~ 62 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NLGIP----IIG-PTKEL---------PSGG-----FSY 62 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hCCCc----eeC-CCCCC---------CCCC-----ccC
Confidence 466667778899999998 599999 999865432 11000 001 12222 2111 111
Q ss_pred hhhHhhHHHHHH---hhHHHHHHHhhcC--CCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCC
Q 044012 91 PETTKKLFPALE---LLRPEIEKLFREQ--NPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKN 165 (490)
Q Consensus 91 ~~~~~~~~~~~~---~~~~~l~~~l~~~--~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (490)
......+..... ...-.-..+++++ +||+||+-.-+. +..+|...|+|++++.+.=.-.+ .
T Consensus 63 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~------~------- 128 (396)
T TIGR03492 63 QSLRGLLRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYY------W------- 128 (396)
T ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeecccee------e-------
Confidence 111111111111 1122333445555 999999876555 88899999999998755311000 0
Q ss_pred CCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceEEec
Q 044012 166 IVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWHLG 245 (490)
Q Consensus 166 ~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 245 (490)
..-++.+.. .. ...++.. .+..+ ....-..+.++.+..+. +..-+++.. .+.++.++|
T Consensus 129 -------~~~~~~~~~-~~-~~~~~G~------~~~p~-e~n~l~~~~a~~v~~~~-----~~t~~~l~~-~g~k~~~vG 186 (396)
T TIGR03492 129 -------ESGPRRSPS-DE-YHRLEGS------LYLPW-ERWLMRSRRCLAVFVRD-----RLTARDLRR-QGVRASYLG 186 (396)
T ss_pred -------cCCCCCccc-hh-hhccCCC------ccCHH-HHHHhhchhhCEEeCCC-----HHHHHHHHH-CCCeEEEeC
Confidence 000111000 00 0000000 00101 11122223445444444 222223322 346899999
Q ss_pred -cccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc----CCceEEEEccC
Q 044012 246 -PVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES----GHSFIWVVGKI 320 (490)
Q Consensus 246 -pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~ 320 (490)
|+....... .. . .-.+++++|.+--||-...-...+..+++++..+ +.+|++.+.+.
T Consensus 187 nPv~d~l~~~-------------~~---~--~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~ 248 (396)
T TIGR03492 187 NPMMDGLEPP-------------ER---K--PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPS 248 (396)
T ss_pred cCHHhcCccc-------------cc---c--ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence 553321100 00 0 1122456788888887543333455666776664 57888887444
Q ss_pred CCCCCchhhhccCch-hHHH---------hhccCCCceEeeccc-hhHhhhccCCceeecccCChhHHHHHHHhCCcEee
Q 044012 321 LKTDDDQEEESWLPD-GFED---------EVRRNDRGFIIKGWA-PQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVT 389 (490)
Q Consensus 321 ~~~~~~~~~~~~~p~-~~~~---------~~~~~~~nv~~~~~~-p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 389 (490)
.+...+...+.+ ++.. ... ..++.+..+. ...++++.+++ +|+-+|..| .|+...|+|+|+
T Consensus 249 ---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Il 320 (396)
T TIGR03492 249 ---LSLEKLQAILEDLGWQLEGSSEDQTSLFQ--KGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQ 320 (396)
T ss_pred ---CCHHHHHHHHHhcCceecCCccccchhhc--cCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEE
Confidence 221111110000 0000 000 1235555554 45779999999 999999777 999999999999
Q ss_pred ccCcccccchHHHHHHhh----ccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 390 WPVFAEQFNNEKLVTQVL----KFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 390 ~P~~~DQ~~na~rv~e~~----G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
+|.-..|. |+... ++. |.++.+.. .+.+.|.+++.++++
T Consensus 321 ip~~~~q~-na~~~-~~~~~l~g~~~~l~~-------------~~~~~l~~~l~~ll~ 363 (396)
T TIGR03492 321 LPGKGPQF-TYGFA-EAQSRLLGGSVFLAS-------------KNPEQAAQVVRQLLA 363 (396)
T ss_pred EeCCCCHH-HHHHH-HhhHhhcCCEEecCC-------------CCHHHHHHHHHHHHc
Confidence 99877776 98777 453 76666643 345999999999998
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.50 E-value=1e-11 Score=123.75 Aligned_cols=138 Identities=16% Similarity=0.128 Sum_probs=94.1
Q ss_pred ccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHH---------cCCceEEEEccCCCCCCchhhhccCchhHHHhhccC
Q 044012 274 WLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKE---------SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRN 344 (490)
Q Consensus 274 ~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~---------~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 344 (490)
-+...+++++|.+..|+..... +..+++++.. .+.++++..|.+ . .... .+.+...
T Consensus 199 ~~gl~~~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~---~---~~~~----~L~~~~~-- 263 (382)
T PLN02605 199 ELGMDEDLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRN---K---KLQS----KLESRDW-- 263 (382)
T ss_pred HcCCCCCCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCC---H---HHHH----HHHhhcc--
Confidence 3333345667777666654322 3333344432 235667777755 1 1111 1111111
Q ss_pred CCceEeeccchh-HhhhccCCceeecccCChhHHHHHHHhCCcEeeccCccccc-chHHHHHHhhccceeeccccccccc
Q 044012 345 DRGFIIKGWAPQ-VLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQF-NNEKLVTQVLKFGLPVGNEIWKIWA 422 (490)
Q Consensus 345 ~~nv~~~~~~p~-~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~-~na~rv~e~~G~G~~l~~~~~~~~~ 422 (490)
..++.+.+|+++ .++++.+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|+..
T Consensus 264 ~~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~--------- 331 (382)
T PLN02605 264 KIPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFS--------- 331 (382)
T ss_pred cCCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeec---------
Confidence 346888899974 679999999 999999999999999999999998766665 799989 488998754
Q ss_pred cCCCCccchhHHHHHHHHHhcc
Q 044012 423 TQDSPVINRGNIKNAICVVMDN 444 (490)
Q Consensus 423 ~~~~~~~t~~~l~~~i~~~l~n 444 (490)
-++++|.++|.++++|
T Consensus 332 ------~~~~~la~~i~~ll~~ 347 (382)
T PLN02605 332 ------ESPKEIARIVAEWFGD 347 (382)
T ss_pred ------CCHHHHHHHHHHHHcC
Confidence 2678999999999984
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.45 E-value=1e-10 Score=119.76 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=89.6
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHHc-CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhH---h
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKES-GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQV---L 358 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~---~ 358 (490)
.+++..|++. ....+..+++++++. +.+++ .+|.. .. -+.+.+... ..++.+.+++++. .
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~-ivG~G---~~--------~~~l~~~~~--~~~V~f~G~v~~~ev~~ 327 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLA-FVGDG---PY--------REELEKMFA--GTPTVFTGMLQGDELSQ 327 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEE-EEeCC---hH--------HHHHHHHhc--cCCeEEeccCCHHHHHH
Confidence 3445567764 334566778888875 45555 44544 11 112333333 4579999999754 4
Q ss_pred hhccCCceeecccC----ChhHHHHHHHhCCcEeeccCcccccchHHHHHHh---hccceeeccccccccccCCCCccch
Q 044012 359 ILEHQAIGGFLTHC----GWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQV---LKFGLPVGNEIWKIWATQDSPVINR 431 (490)
Q Consensus 359 ll~~~~~~~~ItHG----G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~---~G~G~~l~~~~~~~~~~~~~~~~t~ 431 (490)
+++.+|+ +|.-. -..++.||+++|+|+|+.... .....+ +. -+.|+..+.. +.
T Consensus 328 ~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~~-------------d~ 387 (465)
T PLN02871 328 AYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTPG-------------DV 387 (465)
T ss_pred HHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCCC-------------CH
Confidence 8889998 77432 245789999999999987542 344445 44 5678877543 67
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 044012 432 GNIKNAICVVMDNDDQEAVKMRKKANHLK 460 (490)
Q Consensus 432 ~~l~~~i~~~l~n~~~~~~~~~~~a~~l~ 460 (490)
+++.++|.++++ +.+...++.+++++..
T Consensus 388 ~~la~~i~~ll~-~~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 388 DDCVEKLETLLA-DPELRERMGAAAREEV 415 (465)
T ss_pred HHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 899999999998 4333345555555443
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.37 E-value=9.9e-10 Score=108.31 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=63.3
Q ss_pred CCceEeeccchhHh---hhccCCceeecccCC----hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQVL---ILEHQAIGGFLTHCG----WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~~~---ll~~~~~~~~ItHGG----~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
..|+.+.+|+++.+ +++.+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+ +..+.|...+.
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i-~~~~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIV-TDGENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhhh-cCCcceEEcCC--
Confidence 56899999988654 7999998 886654 47899999999999987644 456667 56788887754
Q ss_pred ccccccCCCCccchhHHHHHHHHHhcc
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMDN 444 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~n 444 (490)
-+.+++.++|.++++|
T Consensus 317 -----------~~~~~l~~~i~~l~~~ 332 (364)
T cd03814 317 -----------GDAEAFAAALAALLAD 332 (364)
T ss_pred -----------CCHHHHHHHHHHHHcC
Confidence 4678899999999983
No 46
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.37 E-value=3.2e-13 Score=114.38 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=80.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCC
Q 044012 10 VMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTS 89 (490)
Q Consensus 10 Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (490)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. ++.|+.++.. ..++.....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~---~~~~~~~~~----- 63 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGD---SRLPRSLEP----- 63 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSC---GGGGHHHHH-----
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCC---cCcCcccch-----
Confidence 78999999999999999999999999999999999999999877 8999988632 000000000
Q ss_pred ChhhHhhHHH---HHHhhHHHHHHHhh--------cCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHH
Q 044012 90 TPETTKKLFP---ALELLRPEIEKLFR--------EQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFN 150 (490)
Q Consensus 90 ~~~~~~~~~~---~~~~~~~~l~~~l~--------~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 150 (490)
......... ........+.+... ....|+++.+.....+..+|+++|||++.....+..+
T Consensus 64 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 64 -LANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp -HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred -hhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 011111111 11111222222111 1367888888877789999999999999987776443
No 47
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.29 E-value=8.5e-09 Score=103.96 Aligned_cols=94 Identities=15% Similarity=0.229 Sum_probs=65.6
Q ss_pred CceEee-ccchh---HhhhccCCceeecc-c------CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeec
Q 044012 346 RGFIIK-GWAPQ---VLILEHQAIGGFLT-H------CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVG 414 (490)
Q Consensus 346 ~nv~~~-~~~p~---~~ll~~~~~~~~It-H------GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~ 414 (490)
+|+.+. +|+|. ..+|..+++ +|. + |--+++.||+++|+|+|+... ......+ +.-+.|+..
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE-
Confidence 466654 58874 446889998 652 1 124579999999999998643 3556666 576778776
Q ss_pred cccccccccCCCCccchhHHHHHHHHHhcc--CcHHHHHHHHHHHHHHH
Q 044012 415 NEIWKIWATQDSPVINRGNIKNAICVVMDN--DDQEAVKMRKKANHLKE 461 (490)
Q Consensus 415 ~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n--~~~~~~~~~~~a~~l~~ 461 (490)
. +.++|.++|.++++| +.+....|++++++.++
T Consensus 366 -~-------------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 366 -G-------------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred -C-------------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 2 578999999999983 13455677777776663
No 48
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.27 E-value=1.6e-08 Score=100.39 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=65.5
Q ss_pred CCceEeeccchh-HhhhccCCceeec----ccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccccc
Q 044012 345 DRGFIIKGWAPQ-VLILEHQAIGGFL----THCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWK 419 (490)
Q Consensus 345 ~~nv~~~~~~p~-~~ll~~~~~~~~I----tHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 419 (490)
.+++.+.++.++ ..++..+++ +| +-|...++.||+++|+|+|+.. ....+..+ +.-..|...+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i-~~~~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVV-KHGETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhh-cCCCceEEcCC----
Confidence 357888888764 668999998 66 3344569999999999999864 34456666 35456766643
Q ss_pred ccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044012 420 IWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHL 459 (490)
Q Consensus 420 ~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l 459 (490)
-+.+++.++|.++++ +.+...++++++++.
T Consensus 321 ---------~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~ 350 (371)
T cd04962 321 ---------GDVEAMAEYALSLLE-DDELWQEFSRAARNR 350 (371)
T ss_pred ---------CCHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 378899999999998 433334455555544
No 49
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.27 E-value=1.8e-08 Score=99.55 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=68.8
Q ss_pred CCceEeeccchhHh---hhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQVL---ILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~~~---ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
.+|+.+.+++|+.+ ++..+++ +|.- |...++.||+++|+|+|+.. ....+..+ +..+.|..++..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i-~~~~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLV-ADGENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhhe-ecCceeEEeCCC-
Confidence 56899999998654 7888998 6633 34578999999999999865 34456666 466778887654
Q ss_pred ccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELA 463 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~ 463 (490)
. . ++.++|.++++ +.+....+.+++++..++.
T Consensus 330 ----------~--~-~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 330 ----------D--E-ALAEALLRLLQ-DPELRRRLSKNAEESAEKF 361 (374)
T ss_pred ----------C--H-HHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence 2 2 89999999998 4333345565555555543
No 50
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=7.9e-10 Score=99.30 Aligned_cols=132 Identities=15% Similarity=0.183 Sum_probs=97.6
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccch-hHhhhc
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAP-QVLILE 361 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p-~~~ll~ 361 (490)
-|+|++|.. .+....-.++..+.+..+.+-+++|+. .+ ++. .+..+.. ..+|+.+..... ...+++
T Consensus 160 ~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~---~p--~l~-----~l~k~~~-~~~~i~~~~~~~dma~LMk 226 (318)
T COG3980 160 DILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSS---NP--TLK-----NLRKRAE-KYPNINLYIDTNDMAELMK 226 (318)
T ss_pred eEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCC---Cc--chh-----HHHHHHh-hCCCeeeEecchhHHHHHH
Confidence 499999853 344456678888888777776777744 21 111 1222111 155677655554 677999
Q ss_pred cCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHH
Q 044012 362 HQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVV 441 (490)
Q Consensus 362 ~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~ 441 (490)
.|++ .|+-||. |++|++.-|+|.+++|+...|--.|... +.+|+-..+.. .++.+.....+.++
T Consensus 227 e~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~------------~l~~~~~~~~~~~i 290 (318)
T COG3980 227 EADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGY------------HLKDLAKDYEILQI 290 (318)
T ss_pred hcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccC------------CCchHHHHHHHHHh
Confidence 9999 9997774 8999999999999999999999999999 69998888765 37788888888888
Q ss_pred hc
Q 044012 442 MD 443 (490)
Q Consensus 442 l~ 443 (490)
.+
T Consensus 291 ~~ 292 (318)
T COG3980 291 QK 292 (318)
T ss_pred hh
Confidence 87
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.26 E-value=1.2e-08 Score=101.33 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=65.1
Q ss_pred CCceEeeccchhH---hhhccCCceeecccCC---------hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhcccee
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLTHCG---------WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLP 412 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~ItHGG---------~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~ 412 (490)
.+|+.+.+++++. .++..+++ +|.... .+++.||+++|+|+|+.+..+.+ ..+ ...+.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~----~~~-~~~~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA----ELV-EEAGAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch----hhh-ccCCcceE
Confidence 5689999999754 47888998 663222 34579999999999998765433 333 23366777
Q ss_pred eccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 044012 413 VGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKE 461 (490)
Q Consensus 413 l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~ 461 (490)
.+. -+.+++.++|.++++ +.+....+++++++...
T Consensus 347 ~~~-------------~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 347 VPP-------------GDPEALAAAILELLD-DPEERAEMGENGRRYVE 381 (394)
T ss_pred eCC-------------CCHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 654 378999999999997 43333444454444433
No 52
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.25 E-value=1.4e-08 Score=99.70 Aligned_cols=128 Identities=19% Similarity=0.159 Sum_probs=81.2
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHHc---CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhH
Q 044012 281 NSVLYICFGSLTRFSKEQTSEIAAALKES---GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQV 357 (490)
Q Consensus 281 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~ 357 (490)
+..+++..|++.. ...+..+++++..+ +.++++. |.. .... ...... ....++.+.+|+++.
T Consensus 190 ~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~-G~~---~~~~--------~~~~~~-~~~~~v~~~g~~~~~ 254 (359)
T cd03823 190 GRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIV-GNG---LELE--------EESYEL-EGDPRVEFLGAYPQE 254 (359)
T ss_pred CceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEE-cCc---hhhh--------HHHHhh-cCCCeEEEeCCCCHH
Confidence 3456666777643 23345555665553 4555444 443 1100 000000 115689999999754
Q ss_pred ---hhhccCCceeecc-----cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCcc
Q 044012 358 ---LILEHQAIGGFLT-----HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVI 429 (490)
Q Consensus 358 ---~ll~~~~~~~~It-----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~ 429 (490)
.++..+++ +|+ -|...++.||+++|+|+|+.+. ..+...+ +..+.|......
T Consensus 255 ~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~~------------- 314 (359)
T cd03823 255 EIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPPG------------- 314 (359)
T ss_pred HHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECCC-------------
Confidence 46889998 663 2334589999999999998654 4566667 465578777553
Q ss_pred chhHHHHHHHHHhc
Q 044012 430 NRGNIKNAICVVMD 443 (490)
Q Consensus 430 t~~~l~~~i~~~l~ 443 (490)
+.+++.++|.++++
T Consensus 315 d~~~l~~~i~~l~~ 328 (359)
T cd03823 315 DAEDLAAALERLID 328 (359)
T ss_pred CHHHHHHHHHHHHh
Confidence 58999999999998
No 53
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.21 E-value=5.1e-08 Score=97.90 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=65.1
Q ss_pred CCceEeeccchhHh---hhccCCceeec--cc-CC-hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQVL---ILEHQAIGGFL--TH-CG-WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~~~---ll~~~~~~~~I--tH-GG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
.++|.+.+++|+.+ ++..+++ +| +. .| ..++.||+++|+|+|+.. .......+ +.-..|+.++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEcCC--
Confidence 45899999998754 6778888 55 22 22 348999999999999863 34556666 35456776654
Q ss_pred ccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLK 460 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~ 460 (490)
-+++++.++|.++++ +.+....+.+++++..
T Consensus 351 -----------~d~~~la~~i~~ll~-~~~~~~~l~~~ar~~~ 381 (396)
T cd03818 351 -----------FDPDALAAAVIELLD-DPARRARLRRAARRTA 381 (396)
T ss_pred -----------CCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 378999999999998 4333334444444433
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.21 E-value=2.7e-08 Score=97.62 Aligned_cols=318 Identities=16% Similarity=0.145 Sum_probs=167.6
Q ss_pred eEEEEcCC---C-CCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 9 HVMFLPYI---A-PGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 9 ~Il~~~~~---~-~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
||++++.. . .|+...+..|++.|.+.||+|++++........... ..... ....
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~------------~~~~~--------~~~~-- 58 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE------------VGGIV--------VVRP-- 58 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee------------ecCcc--------eecC--
Confidence 45555532 2 688999999999999999999999985433222111 00000 0000
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchH--HHHHHhCCCeEEEecccHHHHHHHHhhhhcCC
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTV--SIAEELGIPRLAFTGSGFFNNCVSHSLEHHQP 162 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (490)
.. ................+...++..++|+|++........ ..+...++|++...........
T Consensus 59 -~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~---------- 123 (374)
T cd03801 59 -PP----LLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP---------- 123 (374)
T ss_pred -Cc----ccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc----------
Confidence 00 000001111112334556667777999999987665433 5788889998876443221100
Q ss_pred CCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhC---C
Q 044012 163 FKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTG---K 239 (490)
Q Consensus 163 ~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~---~ 239 (490)
.. . ... ...............++.++..+-. .........+ .
T Consensus 124 ----------------~~----~----~~~------~~~~~~~~~~~~~~~~d~~i~~s~~-----~~~~~~~~~~~~~~ 168 (374)
T cd03801 124 ----------------GN----E----LGL------LLKLARALERRALRRADRIIAVSEA-----TREELRELGGVPPE 168 (374)
T ss_pred ----------------cc----c----hhH------HHHHHHHHHHHHHHhCCEEEEecHH-----HHHHHHhcCCCCCC
Confidence 00 0 000 0111112223344566666666632 2223333222 2
Q ss_pred ceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc-----CCceE
Q 044012 240 KAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES-----GHSFI 314 (490)
Q Consensus 240 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i 314 (490)
++..+..-.....-.. .......-... ..+..+++.+|+.. ....+..+++++..+ +.+++
T Consensus 169 ~~~~i~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~ 234 (374)
T cd03801 169 KITVIPNGVDTERFRP-----------APRAARRRLGI-PEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLV 234 (374)
T ss_pred cEEEecCcccccccCc-----------cchHHHhhcCC-cCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEE
Confidence 5555543222111000 00000011111 12334666677654 333455555555543 23433
Q ss_pred EEEccCCCCCCchhhhccCchhHHHhh--ccCCCceEeeccchh---HhhhccCCceeecc----cCChhHHHHHHHhCC
Q 044012 315 WVVGKILKTDDDQEEESWLPDGFEDEV--RRNDRGFIIKGWAPQ---VLILEHQAIGGFLT----HCGWNSILEGVSAGV 385 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~nv~~~~~~p~---~~ll~~~~~~~~It----HGG~~s~~eal~~Gv 385 (490)
.+|.. ... ..+.... .....++.+.+++++ ..++..+++ +|. -|..+++.||+++|+
T Consensus 235 -i~G~~---~~~--------~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~ 300 (374)
T cd03801 235 -IVGDG---PLR--------EELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGL 300 (374)
T ss_pred -EEeCc---HHH--------HHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCC
Confidence 33433 111 0111110 011568999999974 457889998 663 356779999999999
Q ss_pred cEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhcc
Q 044012 386 PMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDN 444 (490)
Q Consensus 386 P~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n 444 (490)
|+|+.+. ......+ +..+.|...+. .+.+++.++|.++++|
T Consensus 301 pvI~~~~----~~~~~~~-~~~~~g~~~~~-------------~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 301 PVVASDV----GGIPEVV-EDGETGLLVPP-------------GDPEALAEAILRLLDD 341 (374)
T ss_pred cEEEeCC----CChhHHh-cCCcceEEeCC-------------CCHHHHHHHHHHHHcC
Confidence 9998765 4566667 46677877754 3689999999999983
No 55
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.21 E-value=2.3e-08 Score=100.22 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=66.5
Q ss_pred CCceEeeccchhHh---hhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQVL---ILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~~~---ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
..|+.+.+|+|+.+ +++.+++ +++. |-..++.||+++|+|+|+-... .....+ +..+.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeCC--
Confidence 45899999999755 5888998 7743 3346899999999999986543 455666 56678887754
Q ss_pred ccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANH 458 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~ 458 (490)
-+.+++.++|.++++ +.+....+.+++++
T Consensus 353 -----------~~~~~l~~~i~~l~~-~~~~~~~~~~~a~~ 381 (398)
T cd03800 353 -----------RDPEALAAALRRLLT-DPALRRRLSRAGLR 381 (398)
T ss_pred -----------CCHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 368999999999998 43232344444443
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.20 E-value=5.7e-08 Score=95.15 Aligned_cols=324 Identities=14% Similarity=0.148 Sum_probs=166.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhh-hhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARR-FQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
||++++....|+...+..++++|.++||+|++++....... ... .++.+..++.... .
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~------~------ 59 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA---------LGVKVIPIPLDRR------G------ 59 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc---------CCceEEecccccc------c------
Confidence 57888877788889999999999999999999998655442 111 2555555542110 0
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCC
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKN 165 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (490)
. ..+..+ .....+.+.+++.+||+|++..... .+..++...+.|.+...........
T Consensus 60 ~---~~~~~~-----~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------- 118 (359)
T cd03808 60 I---NPFKDL-----KALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------- 118 (359)
T ss_pred c---ChHhHH-----HHHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh-------------
Confidence 0 011111 1123455667778999999886444 2344455466665554322111100
Q ss_pred CCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHH-HHhhhcccEEEEcchhhcChHHHHHHHhhhC---Cce
Q 044012 166 IVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDEL-NNAERKSFGVLMNSFYELEPAYADHFRRVTG---KKA 241 (490)
Q Consensus 166 ~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~---~~~ 241 (490)
... . . .......+ ......++.++..+-.. ......... ...
T Consensus 119 ------------~~~----------~--~-----~~~~~~~~~~~~~~~~d~ii~~s~~~-----~~~~~~~~~~~~~~~ 164 (359)
T cd03808 119 ------------TSG----------G--L-----KRRLYLLLERLALRFTDKVIFQNEDD-----RDLALKLGIIKKKKT 164 (359)
T ss_pred ------------ccc----------h--h-----HHHHHHHHHHHHHhhccEEEEcCHHH-----HHHHHHhcCCCcCce
Confidence 000 0 0 00011111 11233445666655222 222222111 122
Q ss_pred EEeccccCCCCCCcchhccCCCCccCccccccccCC-CCCCeEEEEEeCCcccCCHHHHHHHHHHHHH-----cCCceEE
Q 044012 242 WHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNS-RKPNSVLYICFGSLTRFSKEQTSEIAAALKE-----SGHSFIW 315 (490)
Q Consensus 242 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~ 315 (490)
..+.|........ ..... ..++.++++..|++.. .+.+..+++++.. .+.++++
T Consensus 165 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~~~l~i 224 (359)
T cd03808 165 VLIPGSGVDLDRF------------------SPSPEPIPEDDPVFLFVARLLK--DKGIDELLEAARILKAKGPNVRLLL 224 (359)
T ss_pred EEecCCCCChhhc------------------CccccccCCCCcEEEEEecccc--ccCHHHHHHHHHHHHhcCCCeEEEE
Confidence 3332222211000 00000 1234467777787653 2234444444443 2345444
Q ss_pred EEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccch-hHhhhccCCceeecccC----ChhHHHHHHHhCCcEeec
Q 044012 316 VVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAP-QVLILEHQAIGGFLTHC----GWNSILEGVSAGVPMVTW 390 (490)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p-~~~ll~~~~~~~~ItHG----G~~s~~eal~~GvP~l~~ 390 (490)
. |.. ........ ....... ...++.+.++.. ...++..+++ +|.-. -.+++.||+.+|+|+|+-
T Consensus 225 ~-G~~---~~~~~~~~----~~~~~~~-~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s 293 (359)
T cd03808 225 V-GDG---DEENPAAI----LEIEKLG-LEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIAT 293 (359)
T ss_pred E-cCC---CcchhhHH----HHHHhcC-CcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEe
Confidence 4 443 11100000 0001111 145788888754 4668999998 66533 367899999999999986
Q ss_pred cCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044012 391 PVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANH 458 (490)
Q Consensus 391 P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~ 458 (490)
+.. .+...+ +..+.|...+. -+.+++.++|.+++. +.+...++.+++++
T Consensus 294 ~~~----~~~~~i-~~~~~g~~~~~-------------~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~ 342 (359)
T cd03808 294 DVP----GCREAV-IDGVNGFLVPP-------------GDAEALADAIERLIE-DPELRARMGQAARK 342 (359)
T ss_pred cCC----Cchhhh-hcCcceEEECC-------------CCHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 543 445566 45667877754 378999999999998 43332333444333
No 57
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.12 E-value=1.2e-07 Score=93.41 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=90.1
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHHcC-CceEEEEccCCCCCCchhhhccCchhHHHhh--ccCCCceEeeccchhH--
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKESG-HSFIWVVGKILKTDDDQEEESWLPDGFEDEV--RRNDRGFIIKGWAPQV-- 357 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~nv~~~~~~p~~-- 357 (490)
.+++..|++. ....+..+++++.++. .++++. |.. .. .+.+.+.. .....||.+.+|+|+.
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~-G~g---~~--------~~~~~~~~~~~~~~~~V~~~g~v~~~~~ 257 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIV-GEG---PL--------EAELEALAAALGLLDRVRFLGRLDDEEK 257 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEEE-eCC---hh--------HHHHHHHHHhcCCcceEEEcCCCCHHHH
Confidence 4666677754 3345667888888876 454444 332 11 11111111 1125689999999964
Q ss_pred -hhhccCCceeecc---cCC-hhHHHHHHHhCCcEeeccCcccccchHHHHHHh-hccceeeccccccccccCCCCccch
Q 044012 358 -LILEHQAIGGFLT---HCG-WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQV-LKFGLPVGNEIWKIWATQDSPVINR 431 (490)
Q Consensus 358 -~ll~~~~~~~~It---HGG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~-~G~G~~l~~~~~~~~~~~~~~~~t~ 431 (490)
.+++.+++-++-+ +.| ..++.||+++|+|+|+....+ ....+ +. .+.|...+. -+.
T Consensus 258 ~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~----~~~~i-~~~~~~g~~~~~-------------~d~ 319 (357)
T cd03795 258 AALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGT----GGSYV-NLHGVTGLVVPP-------------GDP 319 (357)
T ss_pred HHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCC----chhHH-hhCCCceEEeCC-------------CCH
Confidence 5888899833333 233 347999999999999865433 33444 33 466766643 478
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 044012 432 GNIKNAICVVMDNDDQEAVKMRKKANHLKEL 462 (490)
Q Consensus 432 ~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~ 462 (490)
+++.++|.++++ +.+....+++++++..++
T Consensus 320 ~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 320 AALAEAIRRLLE-DPELRERLGEAARERAEE 349 (357)
T ss_pred HHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
Confidence 999999999998 433334555555554433
No 58
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.11 E-value=1e-06 Score=88.93 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=86.6
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHHc----CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhH-
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKES----GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQV- 357 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~- 357 (490)
.+++..|++. +...+..+++|++.+ +.+++ .+|.. ....+++. ..++.. .+|+.+.+|+|+.
T Consensus 230 ~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~-ivG~g---~~~~~l~~-----~~~~~~--l~~v~f~G~~~~~~ 296 (412)
T PRK10307 230 KIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFV-ICGQG---GGKARLEK-----MAQCRG--LPNVHFLPLQPYDR 296 (412)
T ss_pred EEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEE-EECCC---hhHHHHHH-----HHHHcC--CCceEEeCCCCHHH
Confidence 4555567764 334566677777653 24444 44544 21111111 111122 3479999999864
Q ss_pred --hhhccCCceeecccCCh------hHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCcc
Q 044012 358 --LILEHQAIGGFLTHCGW------NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVI 429 (490)
Q Consensus 358 --~ll~~~~~~~~ItHGG~------~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~ 429 (490)
.+++.+++-++.+..+. +.+.|++.+|+|+|+....+. .....+ + +.|+..+..
T Consensus 297 ~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~~------------- 358 (412)
T PRK10307 297 LPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEPE------------- 358 (412)
T ss_pred HHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCCC-------------
Confidence 47889998444444332 347899999999999864331 122334 3 778888654
Q ss_pred chhHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 044012 430 NRGNIKNAICVVMDNDDQEAVKMRKKANHLK 460 (490)
Q Consensus 430 t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~ 460 (490)
+.++++++|.++++ +.+....+++++++..
T Consensus 359 d~~~la~~i~~l~~-~~~~~~~~~~~a~~~~ 388 (412)
T PRK10307 359 SVEALVAAIAALAR-QALLRPKLGTVAREYA 388 (412)
T ss_pred CHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 78999999999998 4333345555555543
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.11 E-value=6.9e-08 Score=94.09 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=63.7
Q ss_pred CCceEeeccch-hHhhhccCCceeecccC----ChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhc-cceeeccccc
Q 044012 345 DRGFIIKGWAP-QVLILEHQAIGGFLTHC----GWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLK-FGLPVGNEIW 418 (490)
Q Consensus 345 ~~nv~~~~~~p-~~~ll~~~~~~~~ItHG----G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G-~G~~l~~~~~ 418 (490)
..++.+.++.. ...++..+++ +|.-. ..+++.||+++|+|+|+.+..+. ...+. ..| .|...+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~----~~~~~-~~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTG----PSEII-EDGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCc----hHhhh-ccCcceEEeCC---
Confidence 45677777743 4668989998 66543 25789999999999998654332 23342 444 7777754
Q ss_pred cccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 044012 419 KIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKE 461 (490)
Q Consensus 419 ~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~ 461 (490)
-+.+++.++|.++++ +.+....++++++...+
T Consensus 304 ----------~~~~~~~~~i~~ll~-~~~~~~~~~~~~~~~~~ 335 (348)
T cd03820 304 ----------GDVEALAEALLRLME-DEELRKRMGANARESAE 335 (348)
T ss_pred ----------CCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 467999999999998 43333344444444433
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.08 E-value=3.1e-07 Score=90.83 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=57.9
Q ss_pred CCceEeeccch-h---HhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccc
Q 044012 345 DRGFIIKGWAP-Q---VLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNE 416 (490)
Q Consensus 345 ~~nv~~~~~~p-~---~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 416 (490)
..++...+|++ + ..+++.+++ +|.- |..+++.||+++|+|+|+... ......+ +..+.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhhe-eCCCceEEeCC-
Confidence 45788889998 4 347888998 7763 445799999999999997643 2333445 34446766643
Q ss_pred cccccccCCCCccchhHHHHHHHHHhc
Q 044012 417 IWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 417 ~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
.+.+++.++|.++++
T Consensus 315 ------------~~~~~~~~~l~~l~~ 329 (365)
T cd03825 315 ------------GDPEDLAEGIEWLLA 329 (365)
T ss_pred ------------CCHHHHHHHHHHHHh
Confidence 478899999999998
No 61
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.07 E-value=1.5e-08 Score=97.93 Aligned_cols=155 Identities=17% Similarity=0.082 Sum_probs=92.0
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHHcCCc-eEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhh
Q 044012 282 SVLYICFGSLTRFSKEQTSEIAAALKESGHS-FIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLIL 360 (490)
Q Consensus 282 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll 360 (490)
++|.+--||-.+--...+..++++..++..+ ..+.+... .+. +.+.+...+ ...+.+.+ ...+++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a---~~~--------~~i~~~~~~-~~~~~~~~--~~~~~m 233 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF---FKG--------KDLKEIYGD-ISEFEISY--DTHKAL 233 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC---CcH--------HHHHHHHhc-CCCcEEec--cHHHHH
Confidence 5898989987653234455555666654322 22232222 110 112221110 11333332 345789
Q ss_pred ccCCceeecccCChhHHHHHHHhCCcEeeccC--cccccchHHHHHH---hhccceeecc-----ccccccccCCCCccc
Q 044012 361 EHQAIGGFLTHCGWNSILEGVSAGVPMVTWPV--FAEQFNNEKLVTQ---VLKFGLPVGN-----EIWKIWATQDSPVIN 430 (490)
Q Consensus 361 ~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~--~~DQ~~na~rv~e---~~G~G~~l~~-----~~~~~~~~~~~~~~t 430 (490)
..||+ +|+-.|..|+ |+..+|+|||+ +. ..-|+.||+++ . ..|+.-.+-. .-.-++ ...+.|
T Consensus 234 ~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEl---lQ~~~t 305 (347)
T PRK14089 234 LEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPEL---LQEFVT 305 (347)
T ss_pred HhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchh---hcccCC
Confidence 99999 9999999999 99999999988 54 34788999999 5 4455433311 000000 012689
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 431 RGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 431 ~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
++.|.+++.+. . . +.+++...++++++.
T Consensus 306 ~~~la~~i~~~-~-~----~~~~~~~~~l~~~l~ 333 (347)
T PRK14089 306 VENLLKAYKEM-D-R----EKFFKKSKELREYLK 333 (347)
T ss_pred HHHHHHHHHHH-H-H----HHHHHHHHHHHHHhc
Confidence 99999999773 2 2 467777777777664
No 62
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.06 E-value=4e-08 Score=97.49 Aligned_cols=319 Identities=13% Similarity=0.079 Sum_probs=162.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
|||++++ +++.|+.-+..+.++|.++ +.++.++.+....+........ . ++.. .++ +..+ . .
T Consensus 1 ~~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~-~----~i~~-~~~-------~~~~--~-~ 63 (365)
T TIGR00236 1 LKVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL-F----HLPP-DYD-------LNIM--S-P 63 (365)
T ss_pred CeEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh-c----CCCC-Cee-------eecC--C-C
Confidence 5888876 8999999999999999987 6666666665554444443111 0 1110 000 0000 0 0
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcC--CC-cchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCC
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDN--LF-PWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPF 163 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~--~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 163 (490)
+. . ...........+.+++++.+||+|++-. .. .++..+|..+|||++.+...- ..
T Consensus 64 ~~---~----~~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~s------------- 122 (365)
T TIGR00236 64 GQ---T----LGEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-RT------------- 122 (365)
T ss_pred CC---C----HHHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-Cc-------------
Confidence 00 1 1222223346777888899999999864 22 257889999999987542110 00
Q ss_pred CCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHh-hh-CCce
Q 044012 164 KNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRR-VT-GKKA 241 (490)
Q Consensus 164 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~-~~-~~~~ 241 (490)
... ...++ .. . ......+ .++.++..+ ...-+.... .. +.++
T Consensus 123 -------~~~-~~~~~-----------~~-~-----~r~~~~~------~ad~~~~~s-----~~~~~~l~~~G~~~~~I 166 (365)
T TIGR00236 123 -------GDR-YSPMP-----------EE-I-----NRQLTGH------IADLHFAPT-----EQAKDNLLRENVKADSI 166 (365)
T ss_pred -------CCC-CCCCc-----------cH-H-----HHHHHHH------HHHhccCCC-----HHHHHHHHHcCCCcccE
Confidence 000 00000 00 0 0000111 122222222 111111111 11 2356
Q ss_pred EEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc-----CCceEEE
Q 044012 242 WHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES-----GHSFIWV 316 (490)
Q Consensus 242 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~ 316 (490)
..+|-...+...... . ......+.+.+. .++.+|+++.+-... ..+.+..+++|+.++ +.++++.
T Consensus 167 ~vign~~~d~~~~~~------~-~~~~~~~~~~~~--~~~~~vl~~~hr~~~-~~k~~~~ll~a~~~l~~~~~~~~~vi~ 236 (365)
T TIGR00236 167 FVTGNTVIDALLTNV------E-IAYSSPVLSEFG--EDKRYILLTLHRREN-VGEPLENIFKAIREIVEEFEDVQIVYP 236 (365)
T ss_pred EEeCChHHHHHHHHH------h-hccchhHHHhcC--CCCCEEEEecCchhh-hhhHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 677743211100000 0 000112222222 133456665432211 124467778887764 4566665
Q ss_pred EccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh---HhhhccCCceeecccCChhHHHHHHHhCCcEeeccCc
Q 044012 317 VGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ---VLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVF 393 (490)
Q Consensus 317 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~---~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~ 393 (490)
.+.+ .+ .. ..+.+... ..+++.+.+.+++ ..+++.+++ +|+-.|.. +.||+++|+|+|.++..
T Consensus 237 ~~~~---~~---~~----~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~ 302 (365)
T TIGR00236 237 VHLN---PV---VR----EPLHKHLG-DSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDT 302 (365)
T ss_pred CCCC---hH---HH----HHHHHHhC-CCCCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCC
Confidence 4433 11 10 01112121 1457888876654 567788888 99877644 79999999999999765
Q ss_pred ccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 394 AEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 394 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
++++. +. ..|.|..+. -++++|.++|.++++
T Consensus 303 ~~~~e----~~-~~g~~~lv~--------------~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 303 TERPE----TV-EAGTNKLVG--------------TDKENITKAAKRLLT 333 (365)
T ss_pred CCChH----HH-hcCceEEeC--------------CCHHHHHHHHHHHHh
Confidence 55542 32 456665552 368899999999998
No 63
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.04 E-value=9.2e-07 Score=87.14 Aligned_cols=100 Identities=15% Similarity=0.039 Sum_probs=66.4
Q ss_pred CCceEeeccch-hHhhhccCCceeecc--cCC-hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccc
Q 044012 345 DRGFIIKGWAP-QVLILEHQAIGGFLT--HCG-WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKI 420 (490)
Q Consensus 345 ~~nv~~~~~~p-~~~ll~~~~~~~~It--HGG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 420 (490)
.++|.+.+|.+ ...++..+++-++-+ +-| .+++.||+++|+|+|+.-. ......+ +.-+.|..++.
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~----- 314 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVPP----- 314 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeCC-----
Confidence 45799988864 466898999833323 123 4699999999999998643 3345555 45557877754
Q ss_pred cccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 044012 421 WATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKEL 462 (490)
Q Consensus 421 ~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~ 462 (490)
-+.+++.++|.+++..+.+...+++++|++..+.
T Consensus 315 --------~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 315 --------GDAEALAQALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred --------CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 4888999999766642333334566666555543
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.04 E-value=4.1e-07 Score=91.11 Aligned_cols=93 Identities=16% Similarity=0.075 Sum_probs=63.5
Q ss_pred CCceEeeccchhH---hhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
.++|.+.+++|.. .++..+++ ++.. |-..++.||+++|+|+|+.-. ......+ ..-+.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i-~~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETV-VDGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHh-ccCCceEEeC---
Confidence 4689999999865 57888888 6532 223578999999999999743 3344555 3545676652
Q ss_pred ccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHL 459 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l 459 (490)
.+.+++.++|.++++ +.+....+.+++++.
T Consensus 349 -----------~~~~~~a~~i~~l~~-~~~~~~~~~~~a~~~ 378 (392)
T cd03805 349 -----------PTPEEFAEAMLKLAN-DPDLADRMGAAGRKR 378 (392)
T ss_pred -----------CCHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 368899999999998 433334555555443
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.02 E-value=1.3e-06 Score=86.01 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCceEeeccchhH---hhhccCCceeec----ccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFL----THCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~I----tHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
.+|+.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+-+. ......+ +..+.|...+.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~-~~~~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEII-TDGENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHh-cCCcceeEECC--
Confidence 5689999999864 57888888 55 33567789999999999998653 3455666 46666776654
Q ss_pred ccccccCCCCccchhHHHHHHHHHhcc
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMDN 444 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~n 444 (490)
-+.+++.++|.++++|
T Consensus 329 -----------~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 329 -----------GDPEALAEAILRLLAD 344 (377)
T ss_pred -----------CCHHHHHHHHHHHhcC
Confidence 4889999999999983
No 66
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.00 E-value=3.4e-08 Score=97.88 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=83.8
Q ss_pred CCeEEEEEeCCcccC-CHHHHHHHHHHHHHcCC-ceEEEEccCCCCCCchhhhccCchhHHHhhccC---CCceEeeccc
Q 044012 280 PNSVLYICFGSLTRF-SKEQTSEIAAALKESGH-SFIWVVGKILKTDDDQEEESWLPDGFEDEVRRN---DRGFIIKGWA 354 (490)
Q Consensus 280 ~~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~nv~~~~~~ 354 (490)
++++|++++|..... ..+.+..+++|+.++.. ++.+..+.. .. .-+.+.+..... .+++.+.+..
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~---~~-------~~~~l~~~~~~~~~~~~~v~~~~~~ 266 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH---PR-------TRPRIREAGLEFLGHHPNVLLISPL 266 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC---CC-------hHHHHHHHHHhhccCCCCEEEECCc
Confidence 455778888776543 45668888888887543 244444333 11 001222211110 3578877665
Q ss_pred hh---HhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccch
Q 044012 355 PQ---VLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINR 431 (490)
Q Consensus 355 p~---~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~ 431 (490)
++ ..++..+++ +|+..| |.+.||+++|+|+|+++.. |. +..++ +.|++..+. -+.
T Consensus 267 ~~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~~--------------~~~ 324 (363)
T cd03786 267 GYLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLVG--------------TDP 324 (363)
T ss_pred CHHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEecC--------------CCH
Confidence 43 456878999 999999 7788999999999998743 22 33442 566665542 257
Q ss_pred hHHHHHHHHHhc
Q 044012 432 GNIKNAICVVMD 443 (490)
Q Consensus 432 ~~l~~~i~~~l~ 443 (490)
++|.++|.++++
T Consensus 325 ~~i~~~i~~ll~ 336 (363)
T cd03786 325 EAILAAIEKLLS 336 (363)
T ss_pred HHHHHHHHHHhc
Confidence 899999999998
No 67
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.99 E-value=1.4e-06 Score=87.84 Aligned_cols=94 Identities=17% Similarity=0.131 Sum_probs=66.3
Q ss_pred CCceEeeccchh---HhhhccCCceeecc---c-CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQ---VLILEHQAIGGFLT---H-CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~---~~ll~~~~~~~~It---H-GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
.+++.+.+++|+ .++++.+++ +|. + |...++.||+++|+|+|+... ......+ +.-+.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAV-ADGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhh-ccCCceEECCC--
Confidence 357999999975 457999998 663 2 334589999999999998654 3345556 45566777654
Q ss_pred ccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHL 459 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l 459 (490)
-+.+++.++|.++++ +.+..+.+++++++.
T Consensus 353 -----------~d~~~la~~i~~~l~-~~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 353 -----------HDPADWADALARLLD-DPRTRIRMGAAAVEH 382 (405)
T ss_pred -----------CCHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 378999999999998 433334555555543
No 68
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.98 E-value=4.3e-07 Score=87.20 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=73.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc--hhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN--ARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
|||.|--. ..-|+.-+..+.++|.++||+|.+.+-... .+.+... ++.+..+. ..+ .
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y---------g~~y~~iG--------~~g-~-- 59 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY---------GIDYIVIG--------KHG-D-- 59 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc---------CCCeEEEc--------CCC-C--
Confidence 56666542 233999999999999999999999886432 2334433 77777774 111 0
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecc
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (490)
.....+.... .....+.+++++.+||++|+- .+..+..+|..+|+|+|.+.=.
T Consensus 60 ------~~~~Kl~~~~-~R~~~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 60 ------SLYGKLLESI-ERQYKLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred ------CHHHHHHHHH-HHHHHHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecC
Confidence 1222222222 234566677777899999974 5567888999999999998544
No 69
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.98 E-value=3.5e-07 Score=90.64 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=61.2
Q ss_pred CCceEeeccchhH---hhhccCCceeecc----------cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccce
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLT----------HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGL 411 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~It----------HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~ 411 (490)
.+++.+.+++|+. .++..+++ +|. -|-.+++.||+++|+|+|+-+.. .++..+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 4679999999864 46888898 553 23467999999999999987653 466666 4667888
Q ss_pred eeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 412 PVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
.++. -+.+++.++|.++++
T Consensus 317 ~~~~-------------~d~~~l~~~i~~l~~ 335 (367)
T cd05844 317 LVPE-------------GDVAALAAALGRLLA 335 (367)
T ss_pred EECC-------------CCHHHHHHHHHHHHc
Confidence 7754 377999999999998
No 70
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.95 E-value=2.4e-06 Score=84.09 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=59.2
Q ss_pred CCceEeeccchh---HhhhccCCceeecc----------cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccce
Q 044012 345 DRGFIIKGWAPQ---VLILEHQAIGGFLT----------HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGL 411 (490)
Q Consensus 345 ~~nv~~~~~~p~---~~ll~~~~~~~~It----------HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~ 411 (490)
++|+.+.+++|+ ..+++++++ +|. -|..+++.||+++|+|+|+.+.. .....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----Ccchhh-hCCCceE
Confidence 568999999975 447788888 555 34457999999999999986542 233445 3444777
Q ss_pred eeccccccccccCCCCccchhHHHHHHHHHhcc
Q 044012 412 PVGNEIWKIWATQDSPVINRGNIKNAICVVMDN 444 (490)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n 444 (490)
..+. -+.+++.++|.++++|
T Consensus 308 ~~~~-------------~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LVPP-------------GDPEALADAIERLLDD 327 (355)
T ss_pred EeCC-------------CCHHHHHHHHHHHHhC
Confidence 7753 3889999999999983
No 71
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.95 E-value=4.4e-07 Score=88.45 Aligned_cols=131 Identities=15% Similarity=0.182 Sum_probs=78.6
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHHc-----CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccch
Q 044012 281 NSVLYICFGSLTRFSKEQTSEIAAALKES-----GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAP 355 (490)
Q Consensus 281 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p 355 (490)
+..+++..|+.. .......+++++..+ +.++++. |.. ....... ....+.. ..+++.+.++.+
T Consensus 188 ~~~~i~~~g~~~--~~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~---~~~~~~~-----~~~~~~~-~~~~v~~~g~~~ 255 (353)
T cd03811 188 DGPVILAVGRLS--PQKGFDTLIRAFALLRKEGPDARLVIL-GDG---PLREELE-----ALAKELG-LADRVHFLGFQS 255 (353)
T ss_pred CceEEEEEecch--hhcChHHHHHHHHHhhhcCCCceEEEE-cCC---ccHHHHH-----HHHHhcC-CCccEEEecccC
Confidence 345677778765 223455555555553 3444443 433 2111111 0111111 145788888876
Q ss_pred h-HhhhccCCceeecc----cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccc
Q 044012 356 Q-VLILEHQAIGGFLT----HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVIN 430 (490)
Q Consensus 356 ~-~~ll~~~~~~~~It----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t 430 (490)
. ..++..+++ +|. -|..+++.||+++|+|+|+... ......+ +..+.|...+.. +
T Consensus 256 ~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~~-------------~ 315 (353)
T cd03811 256 NPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREIL-EDGENGLLVPVG-------------D 315 (353)
T ss_pred CHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHh-cCCCceEEECCC-------------C
Confidence 4 568999998 653 2446789999999999998543 3666777 577788887654 6
Q ss_pred hhHH---HHHHHHHhc
Q 044012 431 RGNI---KNAICVVMD 443 (490)
Q Consensus 431 ~~~l---~~~i~~~l~ 443 (490)
.+.+ ..++.++++
T Consensus 316 ~~~~~~~~~~i~~~~~ 331 (353)
T cd03811 316 EAALAAAALALLDLLL 331 (353)
T ss_pred HHHHHHHHHHHHhccC
Confidence 6666 666666666
No 72
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.94 E-value=6.6e-07 Score=90.72 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=64.2
Q ss_pred ceEeeccch-hHhhhccCCceeeccc-----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccc
Q 044012 347 GFIIKGWAP-QVLILEHQAIGGFLTH-----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKI 420 (490)
Q Consensus 347 nv~~~~~~p-~~~ll~~~~~~~~ItH-----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 420 (490)
++.+.+... -..+++.+++ ++.. ||..++.||+++|+|+|+-|...++......+ +..|+++..
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~------- 372 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV------- 372 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE-------
Confidence 344444443 3568888887 4331 34446999999999999999888888887777 466655442
Q ss_pred cccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 044012 421 WATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLK 460 (490)
Q Consensus 421 ~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~ 460 (490)
-++++|.++|.++++ +.+....|.+++++..
T Consensus 373 --------~d~~~La~~l~~ll~-~~~~~~~m~~~a~~~~ 403 (425)
T PRK05749 373 --------EDAEDLAKAVTYLLT-DPDARQAYGEAGVAFL 403 (425)
T ss_pred --------CCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 267899999999998 4333334555554433
No 73
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.89 E-value=1.9e-06 Score=85.28 Aligned_cols=164 Identities=13% Similarity=0.200 Sum_probs=93.3
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHHcC--CceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh----
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKESG--HSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ---- 356 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~---- 356 (490)
.+++..|.+.......+..+++++.+.. .+++ .+|.. ....++.. ..++. ..+++|.+.+|+++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~-ivG~g---~~~~~l~~-----~~~~~-~l~~~v~f~G~~~~~~~~ 250 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLH-IIGDG---SDFEKCKA-----YSREL-GIEQRIIWHGWQSQPWEV 250 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEE-EEeCC---ccHHHHHH-----HHHHc-CCCCeEEEecccCCcHHH
Confidence 4556667654323345677788887753 3444 44544 22111111 11111 11468999998743
Q ss_pred -HhhhccCCceeecc--c--CChhHHHHHHHhCCcEeecc-CcccccchHHHHHHhhccceeeccccccccccCCCCccc
Q 044012 357 -VLILEHQAIGGFLT--H--CGWNSILEGVSAGVPMVTWP-VFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVIN 430 (490)
Q Consensus 357 -~~ll~~~~~~~~It--H--GG~~s~~eal~~GvP~l~~P-~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t 430 (490)
.+.++.+++ +|. + |-..++.||+++|+|+|+.- .. .....+ +.-..|..++. -+
T Consensus 251 ~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~----g~~eiv-~~~~~G~lv~~-------------~d 310 (359)
T PRK09922 251 VQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMS----GPRDII-KPGLNGELYTP-------------GN 310 (359)
T ss_pred HHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCC----ChHHHc-cCCCceEEECC-------------CC
Confidence 334556777 554 2 33679999999999999875 32 222344 35445777643 48
Q ss_pred hhHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 044012 431 RGNIKNAICVVMDNDDQ-EAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDIR 485 (490)
Q Consensus 431 ~~~l~~~i~~~l~n~~~-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 485 (490)
.+++.++|.++++|+.. ....+++++++++++.. ...+.++++.+.
T Consensus 311 ~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 357 (359)
T PRK09922 311 IDEFVGKLNKVISGEVKYQHDAIPNSIERFYEVLY---------FKNLNNALFSKL 357 (359)
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHHHhhHHHH---------HHHHHHHHHHHh
Confidence 99999999999994410 11244455555544432 244555555544
No 74
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.85 E-value=8.7e-06 Score=80.20 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCceEeecc-chh---HhhhccCCceeecc----c--CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeec
Q 044012 345 DRGFIIKGW-APQ---VLILEHQAIGGFLT----H--CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVG 414 (490)
Q Consensus 345 ~~nv~~~~~-~p~---~~ll~~~~~~~~It----H--GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~ 414 (490)
.+++.+.+. +|+ ..+++.+++ +|. . |-.+++.||+++|+|+|+.+..+ ...+ ...+.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc
Confidence 457877754 875 458888888 652 2 44568999999999999877543 3344 3556777765
Q ss_pred cccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044012 415 NEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHL 459 (490)
Q Consensus 415 ~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l 459 (490)
.. +.+++.++|.++++ +.+...++.+++++.
T Consensus 318 ~~-------------d~~~~~~~l~~l~~-~~~~~~~~~~~~~~~ 348 (366)
T cd03822 318 PG-------------DPAALAEAIRRLLA-DPELAQALRARAREY 348 (366)
T ss_pred CC-------------CHHHHHHHHHHHHc-ChHHHHHHHHHHHHH
Confidence 43 68999999999998 422223444444433
No 75
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.84 E-value=3.4e-06 Score=84.77 Aligned_cols=77 Identities=19% Similarity=0.200 Sum_probs=53.5
Q ss_pred CCceEeeccchh---HhhhccCCceeecc---cCCh-hHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQ---VLILEHQAIGGFLT---HCGW-NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~---~~ll~~~~~~~~It---HGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
.+++.+.+|+|+ ..+++.+++ +|. +-|. .++.||+++|+|+|+-+..+ ....+ +. |-+... .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~--~- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA--E- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec--C-
Confidence 346899999975 447888998 653 2243 49999999999999876542 33344 23 333222 2
Q ss_pred ccccccCCCCccchhHHHHHHHHHhc
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
.+.+++.++|.++++
T Consensus 318 -----------~~~~~l~~~l~~~l~ 332 (398)
T cd03796 318 -----------PDVESIVRKLEEAIS 332 (398)
T ss_pred -----------CCHHHHHHHHHHHHh
Confidence 367999999999998
No 76
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.84 E-value=7.2e-06 Score=80.44 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=57.3
Q ss_pred CCceEeeccch-hHhhhccCCceeecccCC----hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccccc
Q 044012 345 DRGFIIKGWAP-QVLILEHQAIGGFLTHCG----WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWK 419 (490)
Q Consensus 345 ~~nv~~~~~~p-~~~ll~~~~~~~~ItHGG----~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 419 (490)
..++.+.+... ...+++.+++ +|..+. .+++.||+++|+|+|+. |...+...+ +. .|..++..
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~~~~--- 317 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLVPPG--- 317 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEeCCC---
Confidence 45677766554 4668999998 775443 47999999999999985 444566666 35 56666543
Q ss_pred ccccCCCCccchhHHHHHHHHHhcc
Q 044012 420 IWATQDSPVINRGNIKNAICVVMDN 444 (490)
Q Consensus 420 ~~~~~~~~~~t~~~l~~~i~~~l~n 444 (490)
+.+++.++|.++++|
T Consensus 318 ----------~~~~l~~~i~~l~~~ 332 (365)
T cd03807 318 ----------DPEALAEAIEALLAD 332 (365)
T ss_pred ----------CHHHHHHHHHHHHhC
Confidence 689999999999983
No 77
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.81 E-value=1.6e-05 Score=78.21 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=63.3
Q ss_pred CCceEeeccchhH---hhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
.+++.+.+|+++. .++..+++ +|.- |-.+++.||+++|+|+|+.+ .......+ +. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~----~~~~~~~~-~~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTD----KVPWQELI-EY-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcC----CCCHHHHh-hc-CceEEeCC--
Confidence 5689999999854 46888888 5432 23568999999999999965 34456666 35 77776643
Q ss_pred ccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHL 459 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l 459 (490)
+.+++.++|.++++|+ +....+.+++++.
T Consensus 331 ------------~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ------------DVDALAAALRRALELP-QRLKAMGENGRAL 359 (375)
T ss_pred ------------ChHHHHHHHHHHHhCH-HHHHHHHHHHHHH
Confidence 3499999999999832 2223444444433
No 78
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.81 E-value=1.7e-05 Score=80.75 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=56.6
Q ss_pred CCceEeeccchhHh---hhccC----Cceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceee
Q 044012 345 DRGFIIKGWAPQVL---ILEHQ----AIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPV 413 (490)
Q Consensus 345 ~~nv~~~~~~p~~~---ll~~~----~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l 413 (490)
.++|.+.+++++.+ +++.+ ++ ||.- |=..++.||+++|+|+|+... ..+...+ +.-..|+.+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHh-cCCCcEEEe
Confidence 45688888877655 46554 66 7754 334599999999999998854 3455555 354467777
Q ss_pred ccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 414 GNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 414 ~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
+. -+++++.++|.++++
T Consensus 389 ~~-------------~d~~~la~~i~~ll~ 405 (439)
T TIGR02472 389 DV-------------LDLEAIASALEDALS 405 (439)
T ss_pred CC-------------CCHHHHHHHHHHHHh
Confidence 54 378899999999998
No 79
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.79 E-value=1.4e-05 Score=78.98 Aligned_cols=124 Identities=16% Similarity=0.259 Sum_probs=70.6
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHHcC--CceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhH---hh
Q 044012 285 YICFGSLTRFSKEQTSEIAAALKESG--HSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQV---LI 359 (490)
Q Consensus 285 ~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~---~l 359 (490)
++..|.+. +...+..+++|+.++. .+++ .+|.. ....+... .+.+.. ...++|.+.+++|+. ++
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~-ivG~~---~~~~~~~~----~~~~~~-~~~~~V~~~g~~~~~~~~~~ 264 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLV-IVGNA---DHNTPYGK----LLKEKA-AADPRIIFVGPIYDQELLEL 264 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEE-EEcCC---CCcchHHH----HHHHHh-CCCCcEEEccccChHHHHHH
Confidence 34467664 3345666777777754 4544 44443 11111110 111111 115689999999875 46
Q ss_pred hccCCceeecccCCh-----hHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHH
Q 044012 360 LEHQAIGGFLTHCGW-----NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNI 434 (490)
Q Consensus 360 l~~~~~~~~ItHGG~-----~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l 434 (490)
+..+++ ++-+.-. +++.||+++|+|+|+....+ +...+ +. -|...+.. + .+
T Consensus 265 ~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~-------------~--~l 320 (363)
T cd04955 265 LRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG-------------D--DL 320 (363)
T ss_pred HHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc-------------h--HH
Confidence 667777 5544332 47999999999999875432 22333 23 23333222 1 19
Q ss_pred HHHHHHHhc
Q 044012 435 KNAICVVMD 443 (490)
Q Consensus 435 ~~~i~~~l~ 443 (490)
.++|.++++
T Consensus 321 ~~~i~~l~~ 329 (363)
T cd04955 321 ASLLEELEA 329 (363)
T ss_pred HHHHHHHHh
Confidence 999999998
No 80
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.77 E-value=3.1e-06 Score=82.60 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=77.3
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhH---hhh
Q 044012 284 LYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQV---LIL 360 (490)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~---~ll 360 (490)
+.+..|... +.+....+++++++.+.++++.-.+. ....... ....... ..+++.+.+++++. .++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~----~~~~~~~----~~~~~~~-~~~~v~~~G~~~~~~~~~~~ 241 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVS----DPDYFYR----EIAPELL-DGPDIEYLGEVGGAEKAELL 241 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCC----CHHHHHH----HHHHhcc-cCCcEEEeCCCCHHHHHHHH
Confidence 334456653 33446667788888888866654332 1101100 0111110 14689999999874 468
Q ss_pred ccCCceeecc--cCC-hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHH
Q 044012 361 EHQAIGGFLT--HCG-WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNA 437 (490)
Q Consensus 361 ~~~~~~~~It--HGG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~ 437 (490)
+.+++-++-+ +-| ..++.||+++|+|+|+... ..+...+ +.-..|... . . .+++.++
T Consensus 242 ~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i-~~~~~g~l~--~-----------~--~~~l~~~ 301 (335)
T cd03802 242 GNARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVV-EDGVTGFLV--D-----------S--VEELAAA 301 (335)
T ss_pred HhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhhe-eCCCcEEEe--C-----------C--HHHHHHH
Confidence 8888833323 233 4589999999999998754 3344444 332256554 1 2 8899999
Q ss_pred HHHHhc
Q 044012 438 ICVVMD 443 (490)
Q Consensus 438 i~~~l~ 443 (490)
|.++++
T Consensus 302 l~~l~~ 307 (335)
T cd03802 302 VARADR 307 (335)
T ss_pred HHHHhc
Confidence 999876
No 81
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.76 E-value=8.1e-06 Score=80.48 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=58.1
Q ss_pred CCceEeeccchh-HhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccccc
Q 044012 345 DRGFIIKGWAPQ-VLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWK 419 (490)
Q Consensus 345 ~~nv~~~~~~p~-~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 419 (490)
.+++.+.++..+ ..++..+++ +|+- |-.+++.||+++|+|+|+....+ ....+ +. +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC----
Confidence 457888887543 668989998 5542 45679999999999999865433 44455 35 66655533
Q ss_pred ccccCCCCccchhHHHHHHHHHhccC
Q 044012 420 IWATQDSPVINRGNIKNAICVVMDND 445 (490)
Q Consensus 420 ~~~~~~~~~~t~~~l~~~i~~~l~n~ 445 (490)
-++++++++|.++++|+
T Consensus 316 ---------~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 316 ---------ESPEIWAEEILKLKSED 332 (358)
T ss_pred ---------CCHHHHHHHHHHHHhCc
Confidence 35799999999999944
No 82
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.72 E-value=1.9e-05 Score=77.88 Aligned_cols=128 Identities=12% Similarity=0.111 Sum_probs=78.0
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHHc-----CCceEEEEccCCCCCCchhhhccCchhHHHhhc--cCCCceEeeccc
Q 044012 282 SVLYICFGSLTRFSKEQTSEIAAALKES-----GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVR--RNDRGFIIKGWA 354 (490)
Q Consensus 282 ~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~nv~~~~~~ 354 (490)
..+++..|++. +.+....+++++.++ +.+++++-++. .. +.+.+... ...+|+.+.++.
T Consensus 188 ~~~~l~~g~~~--~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~----~~--------~~~~~~~~~~~~~~~v~~~g~~ 253 (360)
T cd04951 188 TFVILAVGRLV--EAKDYPNLLKAFAKLLSDYLDIKLLIAGDGP----LR--------ATLERLIKALGLSNRVKLLGLR 253 (360)
T ss_pred CEEEEEEeeCc--hhcCcHHHHHHHHHHHhhCCCeEEEEEcCCC----cH--------HHHHHHHHhcCCCCcEEEeccc
Confidence 35667777654 233444555555542 45666553322 11 11111111 014578888887
Q ss_pred hh-HhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCcc
Q 044012 355 PQ-VLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVI 429 (490)
Q Consensus 355 p~-~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~ 429 (490)
.+ ..++..+++ +|.- |..+++.||+.+|+|+|+. |...+...+ +. .|..... -
T Consensus 254 ~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~-------------~ 311 (360)
T cd04951 254 DDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI-------------S 311 (360)
T ss_pred ccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC-------------C
Confidence 54 678999998 5543 2357899999999999974 455666666 45 4444433 4
Q ss_pred chhHHHHHHHHHhccC
Q 044012 430 NRGNIKNAICVVMDND 445 (490)
Q Consensus 430 t~~~l~~~i~~~l~n~ 445 (490)
+.+++.++|.++++++
T Consensus 312 ~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 312 DPEALANKIDEILKMS 327 (360)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 7889999999998534
No 83
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.72 E-value=4.2e-05 Score=83.00 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=90.6
Q ss_pred ccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcC-----CceEEEEccCCCCCCchhhhccCc---hhHHHhh
Q 044012 270 SCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESG-----HSFIWVVGKILKTDDDQEEESWLP---DGFEDEV 341 (490)
Q Consensus 270 ~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~~~~~~~~p---~~~~~~~ 341 (490)
++..|+... ++++ ++..|.+. +.+.+..+++|+..+. ..+.+++|.. .+..+....-. ..+...+
T Consensus 469 ~l~r~~~~p-dkpv-IL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~g---dd~d~l~~~~~~~l~~L~~li 541 (1050)
T TIGR02468 469 EIMRFFTNP-RKPM-ILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNR---DDIDEMSSGSSSVLTSVLKLI 541 (1050)
T ss_pred HHHhhcccC-CCcE-EEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecC---chhhhhhccchHHHHHHHHHH
Confidence 455666543 3433 33445443 3455777888887642 2444555643 11101100000 0111111
Q ss_pred c--cCCCceEeeccchhHh---hhccC----Cceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhc
Q 044012 342 R--RNDRGFIIKGWAPQVL---ILEHQ----AIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLK 408 (490)
Q Consensus 342 ~--~~~~nv~~~~~~p~~~---ll~~~----~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G 408 (490)
+ ...++|.+.+++++.+ ++..+ ++ ||.- |=-.++.||+++|+|+|+-...+ ....+ +.-.
T Consensus 542 ~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~ 614 (1050)
T TIGR02468 542 DKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLD 614 (1050)
T ss_pred HHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCC
Confidence 1 0145688888887654 56555 35 7653 33458999999999999986432 33344 3434
Q ss_pred cceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 044012 409 FGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLK 460 (490)
Q Consensus 409 ~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~ 460 (490)
-|+.++. -++++|+++|.++++ +.+....|.+++++..
T Consensus 615 nGlLVdP-------------~D~eaLA~AL~~LL~-Dpelr~~m~~~gr~~v 652 (1050)
T TIGR02468 615 NGLLVDP-------------HDQQAIADALLKLVA-DKQLWAECRQNGLKNI 652 (1050)
T ss_pred cEEEECC-------------CCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH
Confidence 5777754 478899999999998 5444445666655544
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.71 E-value=5.2e-05 Score=75.78 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=83.4
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHHc--CCceEEEEccCCCCCCchhhhccCchhHHHh---hccCCCceEe-eccchh-
Q 044012 284 LYICFGSLTRFSKEQTSEIAAALKES--GHSFIWVVGKILKTDDDQEEESWLPDGFEDE---VRRNDRGFII-KGWAPQ- 356 (490)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~nv~~-~~~~p~- 356 (490)
+++..|.+. +.+.+..+++|+.++ +.++++..++. ... +.. +.+... ......++.. .+++++
T Consensus 203 ~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~---~~~-~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (388)
T TIGR02149 203 YILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAP---DTP-EVA----EEVRQAVALLDRNRTGIIWINKMLPKE 272 (388)
T ss_pred EEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCC---CcH-HHH----HHHHHHHHHhccccCceEEecCCCCHH
Confidence 455556654 334567777777764 45666555443 110 100 011111 1100223553 456764
Q ss_pred --HhhhccCCceeecc----cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccc
Q 044012 357 --VLILEHQAIGGFLT----HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVIN 430 (490)
Q Consensus 357 --~~ll~~~~~~~~It----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t 430 (490)
..++..+|+ +|. -|...++.||+++|+|+|+... ......+ +.-+.|..++..+. +..-.
T Consensus 273 ~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~~-------~~~~~ 338 (388)
T TIGR02149 273 ELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDNS-------DADGF 338 (388)
T ss_pred HHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCCC-------cccch
Confidence 457889998 664 2334578999999999998653 3466666 46567888765400 00111
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044012 431 RGNIKNAICVVMDNDDQEAVKMRKKANH 458 (490)
Q Consensus 431 ~~~l~~~i~~~l~n~~~~~~~~~~~a~~ 458 (490)
.+++.++|.++++ +.+..+.+.+++++
T Consensus 339 ~~~l~~~i~~l~~-~~~~~~~~~~~a~~ 365 (388)
T TIGR02149 339 QAELAKAINILLA-DPELAKKMGIAGRK 365 (388)
T ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 2889999999998 43332344444444
No 85
>PLN02275 transferase, transferring glycosyl groups
Probab=98.71 E-value=6.1e-05 Score=74.85 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=52.9
Q ss_pred CceEeec-cchhHh---hhccCCceeecc-c-----CC-hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeec
Q 044012 346 RGFIIKG-WAPQVL---ILEHQAIGGFLT-H-----CG-WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVG 414 (490)
Q Consensus 346 ~nv~~~~-~~p~~~---ll~~~~~~~~It-H-----GG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~ 414 (490)
+|+.+.. |+|+.+ +|+.+|+ +|. + -| -+++.||+++|+|+|+... ..+...+ +.-+.|...+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEEC
Confidence 4666655 787654 5999999 663 1 12 3589999999999999743 3366666 5666788762
Q ss_pred cccccccccCCCCccchhHHHHHHHHHh
Q 044012 415 NEIWKIWATQDSPVINRGNIKNAICVVM 442 (490)
Q Consensus 415 ~~~~~~~~~~~~~~~t~~~l~~~i~~~l 442 (490)
+++++.++|.++|
T Consensus 359 ---------------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---------------SSSELADQLLELL 371 (371)
T ss_pred ---------------CHHHHHHHHHHhC
Confidence 3688999988775
No 86
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.68 E-value=1.3e-05 Score=80.47 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=62.1
Q ss_pred CCceEeeccchh-HhhhccCCceeec--cc--CCh-hHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccc
Q 044012 345 DRGFIIKGWAPQ-VLILEHQAIGGFL--TH--CGW-NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIW 418 (490)
Q Consensus 345 ~~nv~~~~~~p~-~~ll~~~~~~~~I--tH--GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 418 (490)
.++|.+.++++. ..+++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. . +..|.|+.+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC----
Confidence 457999999985 558889998 65 32 354 46999999999999987543221 1 1345676663
Q ss_pred cccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044012 419 KIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANH 458 (490)
Q Consensus 419 ~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~ 458 (490)
-++++++++|.++++ +.+....+.+++++
T Consensus 347 ----------~~~~~la~ai~~ll~-~~~~~~~~~~~ar~ 375 (397)
T TIGR03087 347 ----------ADPADFAAAILALLA-NPAEREELGQAARR 375 (397)
T ss_pred ----------CCHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Confidence 368999999999998 42222344444443
No 87
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.68 E-value=6.6e-05 Score=74.69 Aligned_cols=78 Identities=21% Similarity=0.188 Sum_probs=56.9
Q ss_pred CceEeeccch-hHhhhccCCceeec--cc--CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccc
Q 044012 346 RGFIIKGWAP-QVLILEHQAIGGFL--TH--CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKI 420 (490)
Q Consensus 346 ~nv~~~~~~p-~~~ll~~~~~~~~I--tH--GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 420 (490)
.++.+.++.. ...+++.+++ +| ++ |-.+++.||+++|+|+|+-.. ..+...+ +.-..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i-~~~~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELV-QHGVTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHh-cCCCceEEeCC-----
Confidence 4566666544 4678999998 66 32 446799999999999999664 3455555 45456777754
Q ss_pred cccCCCCccchhHHHHHHHHHhc
Q 044012 421 WATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 421 ~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
-+.+++.++|.++++
T Consensus 323 --------~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 323 --------GDAVALARALQPYVS 337 (374)
T ss_pred --------CCHHHHHHHHHHHHh
Confidence 377899999999998
No 88
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.66 E-value=3.8e-05 Score=74.21 Aligned_cols=327 Identities=15% Similarity=0.177 Sum_probs=180.7
Q ss_pred CCCCChHHHHHHHHHHHHC--CCeEEEEe-CCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCChh
Q 044012 16 IAPGHMVPMVDMARLFAAN--GIQVTIIL-TTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTSTPE 92 (490)
Q Consensus 16 ~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 92 (490)
.+.|-++-.++|.++|.++ +..|++-+ ++...+.+.+.. ++.+....+|+..
T Consensus 57 aSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D~------------------- 111 (419)
T COG1519 57 ASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLDL------------------- 111 (419)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcCc-------------------
Confidence 4789999999999999999 88988888 666667766652 2234344443210
Q ss_pred hHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcc--hHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCCCCCCC
Q 044012 93 TTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPW--TVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKNIVSET 170 (490)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (490)
...+...++.++||++|.---..| ...-++..|+|.+.+.-=
T Consensus 112 ------------~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR------------------------ 155 (419)
T COG1519 112 ------------PIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNAR------------------------ 155 (419)
T ss_pred ------------hHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee------------------------
Confidence 124555677789999875544444 455677889999886221
Q ss_pred ceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceEEeccccCC
Q 044012 171 QKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWHLGPVSLY 250 (490)
Q Consensus 171 ~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGpl~~~ 250 (490)
+.-+-.. .+.++-.-....+.+.+.++.-+ ..-.+.+...-.+++..+|-+-..
T Consensus 156 -------------LS~rS~~--------~y~k~~~~~~~~~~~i~li~aQs-----e~D~~Rf~~LGa~~v~v~GNlKfd 209 (419)
T COG1519 156 -------------LSDRSFA--------RYAKLKFLARLLFKNIDLILAQS-----EEDAQRFRSLGAKPVVVTGNLKFD 209 (419)
T ss_pred -------------echhhhH--------HHHHHHHHHHHHHHhcceeeecC-----HHHHHHHHhcCCcceEEecceeec
Confidence 0000000 11111111122233445555444 222223333333557778876444
Q ss_pred CCCCcchhccCCCCccCc---cccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHH--cCCceEEEEccCCCCCC
Q 044012 251 NRDVDDKAERGDKSCVSK---HSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKE--SGHSFIWVVGKILKTDD 325 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~ 325 (490)
...... ++ ..+...++.. ++ +.|..+|. ....+.+.....++.+ .+...||+-... +.
T Consensus 210 ~~~~~~----------~~~~~~~~r~~l~~~--r~-v~iaaSTH-~GEeei~l~~~~~l~~~~~~~llIlVPRHp---ER 272 (419)
T COG1519 210 IEPPPQ----------LAAELAALRRQLGGH--RP-VWVAASTH-EGEEEIILDAHQALKKQFPNLLLILVPRHP---ER 272 (419)
T ss_pred CCCChh----------hHHHHHHHHHhcCCC--Cc-eEEEecCC-CchHHHHHHHHHHHHhhCCCceEEEecCCh---hh
Confidence 321110 11 2344444432 22 55555553 2344445555566655 345667775544 21
Q ss_pred chhhhccCc-hhHH----Hhh--ccCCCceEeeccch-hHhhhccCCc----eeecccCChhHHHHHHHhCCcEeeccCc
Q 044012 326 DQEEESWLP-DGFE----DEV--RRNDRGFIIKGWAP-QVLILEHQAI----GGFLTHCGWNSILEGVSAGVPMVTWPVF 393 (490)
Q Consensus 326 ~~~~~~~~p-~~~~----~~~--~~~~~nv~~~~~~p-~~~ll~~~~~----~~~ItHGG~~s~~eal~~GvP~l~~P~~ 393 (490)
..+.++.+- .++. ++. .-...+|.+.+-+- ...++.-+++ +=++-+||+| ..|.+++|+|++.=|+.
T Consensus 273 f~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~ 351 (419)
T COG1519 273 FKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYT 351 (419)
T ss_pred HHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCcc
Confidence 111111000 0000 000 00022566666553 4445555554 2345699988 67999999999999999
Q ss_pred ccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 394 AEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 394 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
.-|.+.++++ +..|.|+.++ +++.|..++..+++ +.+.-+.|.+++..+-+..+
T Consensus 352 ~Nf~ei~~~l-~~~ga~~~v~---------------~~~~l~~~v~~l~~-~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 352 FNFSDIAERL-LQAGAGLQVE---------------DADLLAKAVELLLA-DEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred ccHHHHHHHH-HhcCCeEEEC---------------CHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 6999999884 25677778877776 43333455555555444433
No 89
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.62 E-value=1e-05 Score=79.84 Aligned_cols=321 Identities=15% Similarity=0.157 Sum_probs=163.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcchhh-----hhhhhcccccCCCceEEEEeeCCCCcCCCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTMNARR-----FQNAIDRDSRLGREISLRILRFPSQEAGLPEG 81 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (490)
|||+++. +++..+.=+.++.++|.+. +.++.++.+....+. ...... .+|... + .....
T Consensus 1 ~ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~------~~~~~~--~------~~~~~ 65 (365)
T TIGR03568 1 KKICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEK------DGFDID--E------KIEIL 65 (365)
T ss_pred CeEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHH------cCCCCC--C------ccccc
Confidence 4777776 8888888888999999874 789888887654321 121100 012110 0 00000
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcC--CCc-chHHHHHHhCCCeEEEecccHHHHHHHHhhh
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDN--LFP-WTVSIAEELGIPRLAFTGSGFFNNCVSHSLE 158 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~--~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 158 (490)
... ..-..+..........+.+++++.+||+||+-. +.. ++..+|..+|||++-+.-.-.+
T Consensus 66 ---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs--------- 129 (365)
T TIGR03568 66 ---LDS----DSNAGMAKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVT--------- 129 (365)
T ss_pred ---cCC----CCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccC---------
Confidence 000 000112233334566778888889999999655 333 6888999999999865222000
Q ss_pred hcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHH-hhh
Q 044012 159 HHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFR-RVT 237 (490)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~-~~~ 237 (490)
.+.+.. . ......++.. ..+..+ ..+-.... ...
T Consensus 130 -----------------~~~~eE---~--------------~r~~i~~la~------l~f~~t-----~~~~~~L~~eg~ 164 (365)
T TIGR03568 130 -----------------EGAIDE---S--------------IRHAITKLSH------LHFVAT-----EEYRQRVIQMGE 164 (365)
T ss_pred -----------------CCCchH---H--------------HHHHHHHHHh------hccCCC-----HHHHHHHHHcCC
Confidence 000000 0 0001111111 111111 11111111 111
Q ss_pred -CCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcc--c-CCHHHHHHHHHHHHHcCCce
Q 044012 238 -GKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLT--R-FSKEQTSEIAAALKESGHSF 313 (490)
Q Consensus 238 -~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~ 313 (490)
+.+++.+|....+.-.... .....++.+.+.-.+++++|+|++=... . ...+.+..+++++.+.+.++
T Consensus 165 ~~~~i~~tG~~~iD~l~~~~--------~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~ 236 (365)
T TIGR03568 165 DPDRVFNVGSPGLDNILSLD--------LLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNY 236 (365)
T ss_pred CCCcEEEECCcHHHHHHhhh--------ccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCC
Confidence 2456666743332110000 0011222222222223457778775433 2 44677999999998887666
Q ss_pred EEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccch---hHhhhccCCceeecccCChhHHHHHHHhCCcEeec
Q 044012 314 IWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAP---QVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTW 390 (490)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p---~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~ 390 (490)
++...... ....... +.+.+.... .+|+.+.+-++ ...+++++++ +||.++.+- .||.+.|+|+|.+
T Consensus 237 ~vi~P~~~--p~~~~i~----~~i~~~~~~-~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l 306 (365)
T TIGR03568 237 IFTYPNAD--AGSRIIN----EAIEEYVNE-HPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINI 306 (365)
T ss_pred EEEEeCCC--CCchHHH----HHHHHHhcC-CCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEee
Confidence 66654330 0000000 011111110 35788887654 5668889999 999765544 9999999999987
Q ss_pred cCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 391 PVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 391 P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
- +.+ .-+ ..|-.+. .. ..++++|.+++.++++
T Consensus 307 ~---~R~---e~~--~~g~nvl-~v------------g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 307 G---TRQ---KGR--LRADSVI-DV------------DPDKEEIVKAIEKLLD 338 (365)
T ss_pred c---CCc---hhh--hhcCeEE-Ee------------CCCHHHHHHHHHHHhC
Confidence 4 211 111 2232222 11 3578999999999664
No 90
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.61 E-value=8e-05 Score=74.88 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=64.3
Q ss_pred CCceEeeccchhH---hhhccCCceeecc--c-------CCh-hHHHHHHHhCCcEeeccCcccccchHHHHHHhhccce
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLT--H-------CGW-NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGL 411 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~It--H-------GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~ 411 (490)
.+++.+.+|+|+. +++..+++ +|. . -|. +++.||+++|+|+|+.... .....+ +.-..|+
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceE
Confidence 4579999999875 47888998 664 2 233 6789999999999987543 344555 3545677
Q ss_pred eeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044012 412 PVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANH 458 (490)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~ 458 (490)
.++. -+.+++.++|.++++++.+...++.+++++
T Consensus 351 lv~~-------------~d~~~la~ai~~l~~~d~~~~~~~~~~ar~ 384 (406)
T PRK15427 351 LVPE-------------NDAQALAQRLAAFSQLDTDELAPVVKRARE 384 (406)
T ss_pred EeCC-------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7754 378999999999987232222344444443
No 91
>PLN02949 transferase, transferring glycosyl groups
Probab=98.60 E-value=0.00023 Score=72.43 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=61.6
Q ss_pred CCceEeeccchhHh---hhccCCceeecc---cCChh-HHHHHHHhCCcEeeccCcccccchHHHHHHhh-c-cceeecc
Q 044012 345 DRGFIIKGWAPQVL---ILEHQAIGGFLT---HCGWN-SILEGVSAGVPMVTWPVFAEQFNNEKLVTQVL-K-FGLPVGN 415 (490)
Q Consensus 345 ~~nv~~~~~~p~~~---ll~~~~~~~~It---HGG~~-s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~-G-~G~~l~~ 415 (490)
.++|.+.+++|+.+ +|+.+++ +|+ +-|+| ++.||+++|+|+|+....+--.+ .+.+.. | .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~e---IV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMD---IVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcce---eeecCCCCcccccC--
Confidence 45799999997544 6888887 662 23334 79999999999999865431101 110000 1 13221
Q ss_pred ccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 044012 416 EIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELA 463 (490)
Q Consensus 416 ~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~ 463 (490)
. +.++++++|.++++++.+...+|.+++++..+++
T Consensus 407 ------------~-~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F 441 (463)
T PLN02949 407 ------------T-TVEEYADAILEVLRMRETERLEIAAAARKRANRF 441 (463)
T ss_pred ------------C-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 2 6889999999999843233345666666655443
No 92
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.56 E-value=7.3e-07 Score=87.06 Aligned_cols=252 Identities=13% Similarity=0.092 Sum_probs=127.6
Q ss_pred HHHHhhHHHHHHHhhcCCCcEEEEcC--CCc-chHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCCCCCCCCceeec
Q 044012 99 PALELLRPEIEKLFREQNPNCIVSDN--LFP-WTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFKNIVSETQKFIV 175 (490)
Q Consensus 99 ~~~~~~~~~l~~~l~~~~pD~VI~D~--~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (490)
.........+.+.+++.+||+||+-. +.. ++.++|..++||.+-+... .... .. .
T Consensus 50 ~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG-lRs~--------------------d~-~ 107 (346)
T PF02350_consen 50 KSTGLAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG-LRSG--------------------DR-T 107 (346)
T ss_dssp HHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES------S---------------------T-T
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC-CCcc--------------------cc-C
Confidence 34445566777788888999998544 433 6788999999997665221 0000 00 0
Q ss_pred CCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHh-h-hCCceEEeccccCCCCC
Q 044012 176 PGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRR-V-TGKKAWHLGPVSLYNRD 253 (490)
Q Consensus 176 p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~-~-~~~~~~~vGpl~~~~~~ 253 (490)
.+. ..+..+.... +-++..+..+ +.+.....+ . -+.+++.+|....+.-.
T Consensus 108 ~g~---------------------~de~~R~~i~--~la~lhf~~t-----~~~~~~L~~~G~~~~rI~~vG~~~~D~l~ 159 (346)
T PF02350_consen 108 EGM---------------------PDEINRHAID--KLAHLHFAPT-----EEARERLLQEGEPPERIFVVGNPGIDALL 159 (346)
T ss_dssp SST---------------------THHHHHHHHH--HH-SEEEESS-----HHHHHHHHHTT--GGGEEE---HHHHHHH
T ss_pred CCC---------------------chhhhhhhhh--hhhhhhccCC-----HHHHHHHHhcCCCCCeEEEEChHHHHHHH
Confidence 000 1112222111 2234444444 222222222 1 13678888855443211
Q ss_pred CcchhccCCCCccCcccc--ccccCCCCCCeEEEEEeCCcccCC-H---HHHHHHHHHHHHc-CCceEEEEccCCCCCCc
Q 044012 254 VDDKAERGDKSCVSKHSC--LSWLNSRKPNSVLYICFGSLTRFS-K---EQTSEIAAALKES-GHSFIWVVGKILKTDDD 326 (490)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~v~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~ 326 (490)
... ....+.. ..++.. ..++.|+|++=...... + ..+..+++++.+. +.++||..... +
T Consensus 160 ~~~--------~~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~---p-- 225 (346)
T PF02350_consen 160 QNK--------EEIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN---P-- 225 (346)
T ss_dssp HHH--------HTTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S----H--
T ss_pred HhH--------HHHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC---c--
Confidence 000 0001111 122222 46779999884444433 3 3455566666665 78899998754 1
Q ss_pred hhhhccCchhHHHhhccCCCceEeeccch---hHhhhccCCceeecccCChhHHH-HHHHhCCcEeeccCcccccchHHH
Q 044012 327 QEEESWLPDGFEDEVRRNDRGFIIKGWAP---QVLILEHQAIGGFLTHCGWNSIL-EGVSAGVPMVTWPVFAEQFNNEKL 402 (490)
Q Consensus 327 ~~~~~~~p~~~~~~~~~~~~nv~~~~~~p---~~~ll~~~~~~~~ItHGG~~s~~-eal~~GvP~l~~P~~~DQ~~na~r 402 (490)
. .-..+.+.+.+. +|+++..-++ +..+|+++++ +||..| +++ ||.+.|+|+|.+ .++..|
T Consensus 226 --~---~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i------R~~geR 289 (346)
T PF02350_consen 226 --R---GSDIIIEKLKKY-DNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI------RDSGER 289 (346)
T ss_dssp --H---HHHHHHHHHTT--TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC------SSS-S-
T ss_pred --h---HHHHHHHHhccc-CCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe------cCCCCC
Confidence 1 111233344433 4888887665 5678889999 999999 666 999999999999 333444
Q ss_pred HHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 403 VTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 403 v~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
- |-+..|-.+-. ..+.++|.++|.+++.
T Consensus 290 q-e~r~~~~nvlv------------~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 290 Q-EGRERGSNVLV------------GTDPEAIIQAIEKALS 317 (346)
T ss_dssp H-HHHHTTSEEEE------------TSSHHHHHHHHHHHHH
T ss_pred H-HHHhhcceEEe------------CCCHHHHHHHHHHHHh
Confidence 4 33333333322 4789999999999997
No 93
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.53 E-value=8.9e-05 Score=74.59 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=49.3
Q ss_pred eeccchhHhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCC
Q 044012 350 IKGWAPQVLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQD 425 (490)
Q Consensus 350 ~~~~~p~~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~ 425 (490)
+.++.+..++++.+++ ||.= +=.+++.||+++|+|+|+.-... + .-+ ..-+-|...
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~------------ 347 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY------------ 347 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec------------
Confidence 5566666779999988 8765 34568999999999999985432 2 333 232233222
Q ss_pred CCccchhHHHHHHHHHhc
Q 044012 426 SPVINRGNIKNAICVVMD 443 (490)
Q Consensus 426 ~~~~t~~~l~~~i~~~l~ 443 (490)
-+.+++.++|.++|+
T Consensus 348 ---~~~~~~a~ai~~~l~ 362 (462)
T PLN02846 348 ---DDGKGFVRATLKALA 362 (462)
T ss_pred ---CCHHHHHHHHHHHHc
Confidence 257789999999997
No 94
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.52 E-value=4.8e-05 Score=77.68 Aligned_cols=206 Identities=12% Similarity=0.051 Sum_probs=109.0
Q ss_pred hhhcChHHHHHHHhhhCCceEEec-cccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHH
Q 044012 222 FYELEPAYADHFRRVTGKKAWHLG-PVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTS 300 (490)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~ 300 (490)
+..+|.+++.. .+-++.+|| |+....... ....+..+-+...+++++|-+--||-.+-=...+.
T Consensus 368 IfPFE~~~y~~----~gv~v~yVGHPL~d~i~~~-----------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllP 432 (608)
T PRK01021 368 ILPFEQNLFKD----SPLRTVYLGHPLVETISSF-----------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLT 432 (608)
T ss_pred cCccCHHHHHh----cCCCeEEECCcHHhhcccC-----------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 44556655432 468899999 775542211 01233344444444667899999986542233455
Q ss_pred HHHHHHH--Hc--CCceEEEEccCCCCCCchhhhccCchhHHHhhccCC-CceEeeccchhHhhhccCCceeecccCChh
Q 044012 301 EIAAALK--ES--GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRND-RGFIIKGWAPQVLILEHQAIGGFLTHCGWN 375 (490)
Q Consensus 301 ~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~ 375 (490)
.+++|.+ .. +.++++..... .. .+.+.+.....+ -.+.+..--...++++.|++ .+.-.|.
T Consensus 433 v~l~aa~~~~l~~~l~fvvp~a~~---~~--------~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT- 498 (608)
T PRK01021 433 IQVQAFLASSLASTHQLLVSSANP---KY--------DHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT- 498 (608)
T ss_pred HHHHHHHHHHhccCeEEEEecCch---hh--------HHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-
Confidence 5677776 43 44565543322 10 011222121001 02222211012578999998 7776665
Q ss_pred HHHHHHHhCCcEeecc-CcccccchHHHHHHhh---c-------cceeeccccccccccCCCCccchhHHHHHHHHHhcc
Q 044012 376 SILEGVSAGVPMVTWP-VFAEQFNNEKLVTQVL---K-------FGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDN 444 (490)
Q Consensus 376 s~~eal~~GvP~l~~P-~~~DQ~~na~rv~e~~---G-------~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n 444 (490)
.+.|+...|+|||++= ...=-+..|++++ +. = +|..+-.+ -+++ ..+.|++.|.+++ ++|.
T Consensus 499 aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPE---llqg--Q~~~tpe~La~~l-~lL~- 570 (608)
T PRK01021 499 IVLETALNQTPTIVTCQLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPE---FIGG--KKDFQPEEVAAAL-DILK- 570 (608)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchh---hcCC--cccCCHHHHHHHH-HHhc-
Confidence 4679999999998852 2222234455554 31 0 11111110 0000 0268999999997 7887
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 044012 445 DDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 445 ~~~~~~~~~~~a~~l~~~~~ 464 (490)
|++..+++++..+++++++-
T Consensus 571 d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 571 TSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 44444577777777777664
No 95
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.50 E-value=2.8e-05 Score=76.61 Aligned_cols=125 Identities=13% Similarity=0.147 Sum_probs=82.4
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh---Hhhhc
Q 044012 285 YICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ---VLILE 361 (490)
Q Consensus 285 ~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~---~~ll~ 361 (490)
++..|.+. .......+++|+++.+.+++++ |.. ... +.+.+ .. .+||.+.+++|+ ..+++
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~iv-G~g---~~~--------~~l~~-~~--~~~V~~~g~~~~~~~~~~~~ 260 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVI-GDG---PEL--------DRLRA-KA--GPNVTFLGRVSDEELRDLYA 260 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEE-ECC---hhH--------HHHHh-hc--CCCEEEecCCCHHHHHHHHH
Confidence 44456654 3345777888888888775554 443 111 11222 11 678999999997 45788
Q ss_pred cCCceeecccCCh-hHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHH
Q 044012 362 HQAIGGFLTHCGW-NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICV 440 (490)
Q Consensus 362 ~~~~~~~ItHGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~ 440 (490)
.+++-++-+.-|. .++.||+++|+|+|+....+ ....+ +.-+.|+.++.. +.+++.++|.+
T Consensus 261 ~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~~-------------~~~~la~~i~~ 322 (351)
T cd03804 261 RARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEEQ-------------TVESLAAAVER 322 (351)
T ss_pred hCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCCC-------------CHHHHHHHHHH
Confidence 9998332233333 46789999999999986433 34445 355678777543 78889999999
Q ss_pred Hhcc
Q 044012 441 VMDN 444 (490)
Q Consensus 441 ~l~n 444 (490)
+++|
T Consensus 323 l~~~ 326 (351)
T cd03804 323 FEKN 326 (351)
T ss_pred HHhC
Confidence 9983
No 96
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.50 E-value=5e-05 Score=74.76 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=54.1
Q ss_pred CCceEeeccchhH---hhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
.+++.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+-... .....+ +. .|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~--~~~~~~~-- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GD--AALYFDP-- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cC--ceeeeCC--
Confidence 6789999999864 57888887 5532 3456899999999999985442 222223 22 2444432
Q ss_pred ccccccCCCCccchhHHHHHHHHHhc
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
-+.+++.++|.++++
T Consensus 321 -----------~~~~~~~~~i~~l~~ 335 (365)
T cd03809 321 -----------LDPEALAAAIERLLE 335 (365)
T ss_pred -----------CCHHHHHHHHHHHhc
Confidence 378999999999988
No 97
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.49 E-value=0.0011 Score=70.76 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=51.3
Q ss_pred CCceEeeccc-hh---Hhhhcc----CCceeecc----cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhcccee
Q 044012 345 DRGFIIKGWA-PQ---VLILEH----QAIGGFLT----HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLP 412 (490)
Q Consensus 345 ~~nv~~~~~~-p~---~~ll~~----~~~~~~It----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~ 412 (490)
.++|.+.++. +. ..++.. +++ ||. =+-..++.||+++|+|+|+.-. ......+ +.-.-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV-~dg~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEII-QDGVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEE
Confidence 3568777764 32 234442 234 663 2334599999999999998643 4566666 35456888
Q ss_pred eccccccccccCCCCccchhHHHHHHHHHh
Q 044012 413 VGNEIWKIWATQDSPVINRGNIKNAICVVM 442 (490)
Q Consensus 413 l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l 442 (490)
++.. ++++++++|.+++
T Consensus 691 Vdp~-------------D~eaLA~aL~~ll 707 (784)
T TIGR02470 691 IDPY-------------HGEEAAEKIVDFF 707 (784)
T ss_pred eCCC-------------CHHHHHHHHHHHH
Confidence 7653 7788999998875
No 98
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.42 E-value=0.00026 Score=71.55 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=59.9
Q ss_pred CCceEeeccchhH---hhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHH---hhccceeec
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQ---VLKFGLPVG 414 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e---~~G~G~~l~ 414 (490)
.++|.+.+++|+. .+|..+++ +|+- +=.-++.||+++|+|+|+.-..+.- ...+ + .-..|+..
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv-~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIV-VPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hhee-eccCCCCceEEe-
Confidence 4589999998864 47888888 5532 2234889999999999986533211 1112 2 23356543
Q ss_pred cccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 044012 415 NEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKEL 462 (490)
Q Consensus 415 ~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~ 462 (490)
. ++++++++|.++++++.+....+++++++..++
T Consensus 377 -------------~-d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~ 410 (419)
T cd03806 377 -------------S-TAEEYAEAIEKILSLSEEERLRIRRAARSSVKR 410 (419)
T ss_pred -------------C-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 2 788999999999984422222334444443333
No 99
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.38 E-value=8.8e-05 Score=70.96 Aligned_cols=225 Identities=15% Similarity=0.091 Sum_probs=119.7
Q ss_pred hhhcChHHHHHHHhhhCCceEEec-cccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHH
Q 044012 222 FYELEPAYADHFRRVTGKKAWHLG-PVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTS 300 (490)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~ 300 (490)
+..+|+++++. .+-...||| |+....+-.. ++..+.+-+....++.++.+--||-.+--...+.
T Consensus 143 ilPFE~~~y~k----~g~~~~yVGHpl~d~i~~~~-----------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~ 207 (381)
T COG0763 143 ILPFEPAFYDK----FGLPCTYVGHPLADEIPLLP-----------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLP 207 (381)
T ss_pred ecCCCHHHHHh----cCCCeEEeCChhhhhccccc-----------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHH
Confidence 44455554432 334489999 6654432111 2344555554445677899999996542223344
Q ss_pred HHHHHHHH-----cCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCce-Eeeccc-h--hHhhhccCCceeeccc
Q 044012 301 EIAAALKE-----SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGF-IIKGWA-P--QVLILEHQAIGGFLTH 371 (490)
Q Consensus 301 ~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv-~~~~~~-p--~~~ll~~~~~~~~ItH 371 (490)
.+.+|.++ .+.+|++-+... ..+ ....... ..+. ...-++ + -.+++..||+ .+.-
T Consensus 208 ~f~~a~~~l~~~~~~~~~vlp~~~~-------~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~aD~--al~a 271 (381)
T COG0763 208 PFVQAAQELKARYPDLKFVLPLVNA-------KYR-----RIIEEAL--KWEVAGLSLILIDGEKRKAFAAADA--ALAA 271 (381)
T ss_pred HHHHHHHHHHhhCCCceEEEecCcH-------HHH-----HHHHHHh--hccccCceEEecCchHHHHHHHhhH--HHHh
Confidence 45555554 357888777654 111 1111111 1111 111122 2 2347778887 6666
Q ss_pred CChhHHHHHHHhCCcEeeccC-cccccchHHHHHHhhccceeeccccccccccCC-CCccchhHHHHHHHHHhccCcHHH
Q 044012 372 CGWNSILEGVSAGVPMVTWPV-FAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQD-SPVINRGNIKNAICVVMDNDDQEA 449 (490)
Q Consensus 372 GG~~s~~eal~~GvP~l~~P~-~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~-~~~~t~~~l~~~i~~~l~n~~~~~ 449 (490)
+|. -+.|+..+|+|||+.== ..=-+..|.+.+ +....-..+.--...+-+.. ....+++.|.+++..++. ++++.
T Consensus 272 SGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~-~~~~~ 348 (381)
T COG0763 272 SGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLV-KLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLL-NGDRR 348 (381)
T ss_pred ccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhc-cCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhc-ChHhH
Confidence 664 46799999999987521 111122333332 22221000000000000000 026899999999999999 44444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 044012 450 VKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDI 484 (490)
Q Consensus 450 ~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 484 (490)
+.+++..+.+.+.++ +++++..+.+.+++.+
T Consensus 349 ~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 349 EALKEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 677888888887776 5667666666666654
No 100
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.38 E-value=0.00075 Score=69.46 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=72.8
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHH---cCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh---
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKE---SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ--- 356 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~--- 356 (490)
.+++..|.+.. .+.+..+++|+.+ .+.++++. |.. .. +. .+.+.+.....+.++.+....+.
T Consensus 292 ~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~-G~g---~~--~~----~~~l~~~~~~~~~~v~~~~~~~~~~~ 359 (473)
T TIGR02095 292 PLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVL-GTG---DP--EL----EEALRELAERYPGNVRVIIGYDEALA 359 (473)
T ss_pred CEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEE-CCC---CH--HH----HHHHHHHHHHCCCcEEEEEcCCHHHH
Confidence 35555666543 2334555555554 35565544 433 11 11 11222222222456666555544
Q ss_pred HhhhccCCceeeccc---CCh-hHHHHHHHhCCcEeeccCcccccchHHHHHHhh------ccceeeccccccccccCCC
Q 044012 357 VLILEHQAIGGFLTH---CGW-NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVL------KFGLPVGNEIWKIWATQDS 426 (490)
Q Consensus 357 ~~ll~~~~~~~~ItH---GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~------G~G~~l~~~~~~~~~~~~~ 426 (490)
..+++.+++ +|.= -|. .++.||+++|+|.|+-...+ ....+ +.- +.|+..+.
T Consensus 360 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~~----------- 421 (473)
T TIGR02095 360 HLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFEE----------- 421 (473)
T ss_pred HHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeCC-----------
Confidence 357888998 6632 243 37889999999999865432 22222 122 66777754
Q ss_pred CccchhHHHHHHHHHhc
Q 044012 427 PVINRGNIKNAICVVMD 443 (490)
Q Consensus 427 ~~~t~~~l~~~i~~~l~ 443 (490)
-+++++.++|.+++.
T Consensus 422 --~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 422 --YDPGALLAALSRALR 436 (473)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 478899999999876
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=0.00074 Score=71.66 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=64.1
Q ss_pred CCceEeeccchh-HhhhccCCceeecc---cCC-hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccccc
Q 044012 345 DRGFIIKGWAPQ-VLILEHQAIGGFLT---HCG-WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWK 419 (490)
Q Consensus 345 ~~nv~~~~~~p~-~~ll~~~~~~~~It---HGG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 419 (490)
.++|.+.+|.+. ..++..+++ ||. +.| .+++.||+.+|+|+|+.... .....+ +.-..|+.++..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCC---
Confidence 457999899874 568889998 654 444 56899999999999997642 355556 354468888655
Q ss_pred ccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044012 420 IWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHL 459 (490)
Q Consensus 420 ~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l 459 (490)
..+++++.++|.+++. +-...+.+++++++.
T Consensus 643 --------d~~~~~La~aL~~ll~-~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 643 --------TVTAPDVAEALARIHD-MCAADPGIARKAADW 673 (694)
T ss_pred --------CCChHHHHHHHHHHHh-ChhccHHHHHHHHHH
Confidence 4566677777777664 111114566555443
No 102
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.36 E-value=0.00057 Score=67.98 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=57.1
Q ss_pred CCceEeeccc--hh---HhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecc
Q 044012 345 DRGFIIKGWA--PQ---VLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGN 415 (490)
Q Consensus 345 ~~nv~~~~~~--p~---~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~ 415 (490)
.+++.+.++. +. ..+++.+++ |+.- |-..++.||+++|+|+|+-... .....+ +.-..|+..+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC-
Confidence 4567777776 33 357888888 7743 2245999999999999987543 333445 3545565442
Q ss_pred ccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044012 416 EIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANH 458 (490)
Q Consensus 416 ~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~ 458 (490)
+.+++..+|.++++ +.+..+.|.+++++
T Consensus 323 --------------~~~~~a~~i~~ll~-~~~~~~~~~~~a~~ 350 (372)
T cd03792 323 --------------TVEEAAVRILYLLR-DPELRRKMGANARE 350 (372)
T ss_pred --------------CcHHHHHHHHHHHc-CHHHHHHHHHHHHH
Confidence 34567889999998 42222344444443
No 103
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.31 E-value=0.001 Score=68.21 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=73.4
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHH---cCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceE-eeccchh--
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKE---SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFI-IKGWAPQ-- 356 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~-~~~~~p~-- 356 (490)
.+++..|.+. +.+.+..+++|+.+ .+.++++. |.. .. ... +.+.+.....+.++. ..+|-..
T Consensus 283 ~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lviv-G~g---~~--~~~----~~l~~l~~~~~~~v~~~~g~~~~~~ 350 (466)
T PRK00654 283 PLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLL-GTG---DP--ELE----EAFRALAARYPGKVGVQIGYDEALA 350 (466)
T ss_pred cEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEE-ecC---cH--HHH----HHHHHHHHHCCCcEEEEEeCCHHHH
Confidence 3555556654 33445556666654 35676665 433 11 000 122222222234554 3455322
Q ss_pred HhhhccCCceeecc---cCChh-HHHHHHHhCCcEeeccCcc--cccchHHHHHHhhccceeeccccccccccCCCCccc
Q 044012 357 VLILEHQAIGGFLT---HCGWN-SILEGVSAGVPMVTWPVFA--EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVIN 430 (490)
Q Consensus 357 ~~ll~~~~~~~~It---HGG~~-s~~eal~~GvP~l~~P~~~--DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t 430 (490)
..+++.+++ +|. +-|.| +..||+.+|+|.|+.-..+ |.-.+...- +..+.|+..+. -+
T Consensus 351 ~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~~-------------~d 414 (466)
T PRK00654 351 HRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFDD-------------FN 414 (466)
T ss_pred HHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeCC-------------CC
Confidence 257889998 664 33444 8889999999999865432 221111111 12266887764 37
Q ss_pred hhHHHHHHHHHhc
Q 044012 431 RGNIKNAICVVMD 443 (490)
Q Consensus 431 ~~~l~~~i~~~l~ 443 (490)
+++|.++|.++++
T Consensus 415 ~~~la~~i~~~l~ 427 (466)
T PRK00654 415 AEDLLRALRRALE 427 (466)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999875
No 104
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.28 E-value=0.00017 Score=70.41 Aligned_cols=213 Identities=18% Similarity=0.169 Sum_probs=109.5
Q ss_pred hhhcChHHHHHHHhhhCCceEEec-cccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHH
Q 044012 222 FYELEPAYADHFRRVTGKKAWHLG-PVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTS 300 (490)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~ 300 (490)
+..+|++++.. .+-++.||| |+........ .+....+.+ -.+++++|.+--||-.+-=...+.
T Consensus 140 ifPFE~~~y~~----~g~~~~~VGHPl~d~~~~~~-----------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP 203 (373)
T PF02684_consen 140 IFPFEPEFYKK----HGVPVTYVGHPLLDEVKPEP-----------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLP 203 (373)
T ss_pred CCcccHHHHhc----cCCCeEEECCcchhhhccCC-----------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHH
Confidence 44455554432 347799999 7755432211 122333333 234677899999986542223344
Q ss_pred HHHHHHHH-----cCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeecc-chhHhhhccCCceeecccCCh
Q 044012 301 EIAAALKE-----SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGW-APQVLILEHQAIGGFLTHCGW 374 (490)
Q Consensus 301 ~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~-~p~~~ll~~~~~~~~ItHGG~ 374 (490)
.++++.+. .+.++++..... .. . +.+.........++.+.-. -.-.+++..+++ .+.-.|
T Consensus 204 ~~l~aa~~l~~~~p~l~fvvp~a~~---~~----~----~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG- 269 (373)
T PF02684_consen 204 IFLEAAKLLKKQRPDLQFVVPVAPE---VH----E----ELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG- 269 (373)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCH---HH----H----HHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-
Confidence 45666554 355766665443 11 0 0011111100222332211 234668888888 666555
Q ss_pred hHHHHHHHhCCcEeeccC-cccccchHHHHHHhhccceeeccccccccccCC------CCccchhHHHHHHHHHhccCcH
Q 044012 375 NSILEGVSAGVPMVTWPV-FAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQD------SPVINRGNIKNAICVVMDNDDQ 447 (490)
Q Consensus 375 ~s~~eal~~GvP~l~~P~-~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~------~~~~t~~~l~~~i~~~l~n~~~ 447 (490)
..+.|+...|+|||++=- ..=.+..|++++ +... +.+. +.+.+.. -+..|++.|.+++.++|+|.
T Consensus 270 TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~-isL~----Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~-- 341 (373)
T PF02684_consen 270 TATLEAALLGVPMVVAYKVSPLTYFIAKRLV-KVKY-ISLP----NIIAGREVVPELIQEDATPENIAAELLELLENP-- 341 (373)
T ss_pred HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhh-cCCE-eech----hhhcCCCcchhhhcccCCHHHHHHHHHHHhcCH--
Confidence 457899999999988632 222334455553 3221 1110 0000000 13789999999999999933
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 044012 448 EAVKMRKKANHLKELAKKAVEEGGSSCN 475 (490)
Q Consensus 448 ~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 475 (490)
..++..+...+.+++..+.|.++..
T Consensus 342 ---~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 342 ---EKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred ---HHHHHHHHHHHHHHHhhhhccCCHH
Confidence 3344444444444444445655544
No 105
>PRK14098 glycogen synthase; Provisional
Probab=98.25 E-value=0.0026 Score=65.51 Aligned_cols=129 Identities=12% Similarity=0.083 Sum_probs=74.0
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHH---cCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh---H
Q 044012 284 LYICFGSLTRFSKEQTSEIAAALKE---SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ---V 357 (490)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~---~ 357 (490)
+++..|.+.. .+.+..+++|+.+ .+.++++. |.. .. ..+ +.+.+...+.+.++.+..+++. .
T Consensus 309 ~i~~vgRl~~--~KG~d~li~a~~~l~~~~~~lviv-G~G---~~--~~~----~~l~~l~~~~~~~V~~~g~~~~~~~~ 376 (489)
T PRK14098 309 LVGVIINFDD--FQGAELLAESLEKLVELDIQLVIC-GSG---DK--EYE----KRFQDFAEEHPEQVSVQTEFTDAFFH 376 (489)
T ss_pred EEEEeccccc--cCcHHHHHHHHHHHHhcCcEEEEE-eCC---CH--HHH----HHHHHHHHHCCCCEEEEEecCHHHHH
Confidence 4444555442 2345555555554 35555444 443 11 011 1233333323567888888775 3
Q ss_pred hhhccCCceeecccC---Ch-hHHHHHHHhCCcEeeccCcc--cccchHHHHHHhhccceeeccccccccccCCCCccch
Q 044012 358 LILEHQAIGGFLTHC---GW-NSILEGVSAGVPMVTWPVFA--EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINR 431 (490)
Q Consensus 358 ~ll~~~~~~~~ItHG---G~-~s~~eal~~GvP~l~~P~~~--DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~ 431 (490)
.+++.+|+ |+.-. |. .+..||+++|+|.|+....+ |.... .. +.-+-|...+. -++
T Consensus 377 ~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~~-------------~d~ 438 (489)
T PRK14098 377 LAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFHD-------------YTP 438 (489)
T ss_pred HHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeCC-------------CCH
Confidence 58889998 66432 22 37789999999988876533 22111 11 22356777754 478
Q ss_pred hHHHHHHHHHh
Q 044012 432 GNIKNAICVVM 442 (490)
Q Consensus 432 ~~l~~~i~~~l 442 (490)
++|.++|.+++
T Consensus 439 ~~la~ai~~~l 449 (489)
T PRK14098 439 EALVAKLGEAL 449 (489)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 106
>PLN00142 sucrose synthase
Probab=98.25 E-value=0.0017 Score=69.28 Aligned_cols=91 Identities=11% Similarity=0.091 Sum_probs=53.6
Q ss_pred CceEeecc----chhHhhhc----cCCceeecc---cCChh-HHHHHHHhCCcEeeccCcccccchHHHHHHhhccceee
Q 044012 346 RGFIIKGW----APQVLILE----HQAIGGFLT---HCGWN-SILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPV 413 (490)
Q Consensus 346 ~nv~~~~~----~p~~~ll~----~~~~~~~It---HGG~~-s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l 413 (490)
++|.+.+. ++..+++. .+++ ||. .-|.| ++.||+++|+|+|+... ......+ +.-.-|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEe
Confidence 45665443 33344443 2355 664 24444 89999999999988643 4455566 354458777
Q ss_pred ccccccccccCCCCccchhHHHHHHHHH----hccCcHHHHHHHHHHH
Q 044012 414 GNEIWKIWATQDSPVINRGNIKNAICVV----MDNDDQEAVKMRKKAN 457 (490)
Q Consensus 414 ~~~~~~~~~~~~~~~~t~~~l~~~i~~~----l~n~~~~~~~~~~~a~ 457 (490)
+.. ++++++++|.++ ++ +.+....|.++++
T Consensus 715 ~P~-------------D~eaLA~aI~~lLekLl~-Dp~lr~~mg~~Ar 748 (815)
T PLN00142 715 DPY-------------HGDEAANKIADFFEKCKE-DPSYWNKISDAGL 748 (815)
T ss_pred CCC-------------CHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 653 677788887654 45 4333344444443
No 107
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.21 E-value=0.0027 Score=65.39 Aligned_cols=83 Identities=10% Similarity=-0.057 Sum_probs=52.5
Q ss_pred CCceEeeccchh---HhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcc--cccchHHHHHHhhccceeecc
Q 044012 345 DRGFIIKGWAPQ---VLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFA--EQFNNEKLVTQVLKFGLPVGN 415 (490)
Q Consensus 345 ~~nv~~~~~~p~---~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~--DQ~~na~rv~e~~G~G~~l~~ 415 (490)
+.|+.+....++ ..+++.+++ ++.- +-..+..||+++|+|+|+....+ |.-.+.... ...|.|...+.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC
Confidence 456765433333 347888888 6632 22247899999999999865532 222222112 13457888764
Q ss_pred ccccccccCCCCccchhHHHHHHHHHhc
Q 044012 416 EIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 416 ~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
. +.+++.++|.++++
T Consensus 427 ~-------------~~~~l~~~i~~~l~ 441 (476)
T cd03791 427 Y-------------NADALLAALRRALA 441 (476)
T ss_pred C-------------CHHHHHHHHHHHHH
Confidence 3 68999999999885
No 108
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.20 E-value=0.00052 Score=65.92 Aligned_cols=334 Identities=15% Similarity=0.135 Sum_probs=172.9
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCC-CeEEEEeCCcch--hhhhhhhcccccCCCceEEEEeeCCCCcCCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANG-IQVTIILTTMNA--RRFQNAIDRDSRLGREISLRILRFPSQEAGLPEG 81 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rG-h~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (490)
++|+||+++. |++=.+.=+..|.+++.+.+ .+..++.+.... +.....+. ...++.|. -
T Consensus 1 m~~~Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le----------~~~i~~pd-------y 62 (383)
T COG0381 1 MKMLKVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLE----------LFGIRKPD-------Y 62 (383)
T ss_pred CCceEEEEEE-ecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHH----------HhCCCCCC-------c
Confidence 4567887775 89999999999999999986 888888777666 55444422 11221110 0
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcC--CCc-chHHHHHHhCCCeEEEecccHHHHHHHHhhh
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDN--LFP-WTVSIAEELGIPRLAFTGSGFFNNCVSHSLE 158 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~--~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 158 (490)
.-... .....+..........+.+++++.+||+|++-. ... ++.++|-..+||+.-+--.--
T Consensus 63 ~L~i~-----~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlR---------- 127 (383)
T COG0381 63 DLNIM-----KPGQTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLR---------- 127 (383)
T ss_pred chhcc-----ccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccc----------
Confidence 00000 011123334445667888889999999999654 333 568899999999876522100
Q ss_pred hcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHH-Hhhh
Q 044012 159 HHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHF-RRVT 237 (490)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~-~~~~ 237 (490)
....+ +|..+ -+.+... -+...+.++ ..+-.+. +...
T Consensus 128 -----------t~~~~---~PEE~---------------------NR~l~~~--~S~~hfapt-----e~ar~nLl~EG~ 165 (383)
T COG0381 128 -----------TGDLY---FPEEI---------------------NRRLTSH--LSDLHFAPT-----EIARKNLLREGV 165 (383)
T ss_pred -----------cCCCC---CcHHH---------------------HHHHHHH--hhhhhcCCh-----HHHHHHHHHcCC
Confidence 00000 11000 0000000 001111111 0011111 1122
Q ss_pred C-CceEEeccccCCCCCCcchhccCCCCccCccccccc-cCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc---CCc
Q 044012 238 G-KKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSW-LNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES---GHS 312 (490)
Q Consensus 238 ~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~---~~~ 312 (490)
+ .+++.+|-...+.-.... .. ...+...... ++. +.+..|.+++=-..... +-+..+.+++.+. ...
T Consensus 166 ~~~~IfvtGnt~iDal~~~~-----~~-~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~ 237 (383)
T COG0381 166 PEKRIFVTGNTVIDALLNTR-----DR-VLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPD 237 (383)
T ss_pred CccceEEeCChHHHHHHHHH-----hh-hccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCC
Confidence 2 346666633222100000 00 0001111111 222 23447887653222222 4455666655541 123
Q ss_pred eEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeec---cchhHhhhccCCceeecccCChhHHHHHHHhCCcEee
Q 044012 313 FIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKG---WAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVT 389 (490)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~---~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 389 (490)
+.++++-+ .. ...+. -....++ ..+++.+.+ |.+...++.++.+ ++|-.| |-.-||-..|+|+++
T Consensus 238 ~~viyp~H---~~-~~v~e----~~~~~L~-~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~ 305 (383)
T COG0381 238 VIVIYPVH---PR-PRVRE----LVLKRLK-NVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLV 305 (383)
T ss_pred ceEEEeCC---CC-hhhhH----HHHHHhC-CCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEe
Confidence 34444433 11 01111 1112222 134566544 5678889999988 999876 356789999999999
Q ss_pred ccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHH
Q 044012 390 WPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKAN 457 (490)
Q Consensus 390 ~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~ 457 (490)
+=...+++. ++ ..|.-+.+ ..+.+.|.+++.++++ + +.+++|.+
T Consensus 306 lR~~TERPE---~v--~agt~~lv--------------g~~~~~i~~~~~~ll~-~----~~~~~~m~ 349 (383)
T COG0381 306 LRDTTERPE---GV--EAGTNILV--------------GTDEENILDAATELLE-D----EEFYERMS 349 (383)
T ss_pred eccCCCCcc---ce--ecCceEEe--------------CccHHHHHHHHHHHhh-C----hHHHHHHh
Confidence 988888886 33 33444444 4677999999999999 5 35555443
No 109
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.14 E-value=8.4e-06 Score=66.40 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=76.0
Q ss_pred EEEEEeCCcccCC---HHHHHHHHHHHHHcCC-ceEEEEccCCCCCCchhhhccCchhHHHhhccCCCc--eEeeccchh
Q 044012 283 VLYICFGSLTRFS---KEQTSEIAAALKESGH-SFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRG--FIIKGWAPQ 356 (490)
Q Consensus 283 ~v~vs~GS~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~n--v~~~~~~p~ 356 (490)
.+||+-||-.... .-.-.+.++.+.+.|+ +.|+.+|.+ . . ..++....... ... +...+|-|-
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg---~----~--~~~d~~~~~~k--~~gl~id~y~f~ps 73 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRG---Q----P--FFGDPIDLIRK--NGGLTIDGYDFSPS 73 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCC---c----c--CCCCHHHhhcc--cCCeEEEEEecCcc
Confidence 6999999976411 1113346677778876 788888877 1 1 12222221111 223 334456674
Q ss_pred -HhhhccCCceeecccCChhHHHHHHHhCCcEeeccC----cccccchHHHHHHhhcc
Q 044012 357 -VLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPV----FAEQFNNEKLVTQVLKF 409 (490)
Q Consensus 357 -~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~----~~DQ~~na~rv~e~~G~ 409 (490)
.+..+.+++ +|+|+|+||+.|.|..|+|.|+++- -.+|-.-|..++ +.|.
T Consensus 74 l~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egy 128 (170)
T KOG3349|consen 74 LTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGY 128 (170)
T ss_pred HHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCc
Confidence 667777888 9999999999999999999999985 347888888885 6554
No 110
>PLN02316 synthase/transferase
Probab=98.07 E-value=0.019 Score=63.12 Aligned_cols=106 Identities=11% Similarity=0.038 Sum_probs=64.7
Q ss_pred CCceEeeccchhH---hhhccCCceeecc----cCChhHHHHHHHhCCcEeeccCcc--cccchH----HHH--HHhhcc
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLT----HCGWNSILEGVSAGVPMVTWPVFA--EQFNNE----KLV--TQVLKF 409 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~It----HGG~~s~~eal~~GvP~l~~P~~~--DQ~~na----~rv--~e~~G~ 409 (490)
+.++.+....+.. .+++.+|+ |+. =+=..+..||+++|+|.|+....+ |.-... .+. ....+-
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 3466665444432 58889998 773 333458999999999998765432 222111 110 001245
Q ss_pred ceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 044012 410 GLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGS 472 (490)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 472 (490)
|+..+. -+++.|..+|.+++. . |......+++..++.+...-+
T Consensus 977 Gflf~~-------------~d~~aLa~AL~raL~-~------~~~~~~~~~~~~r~~m~~dFS 1019 (1036)
T PLN02316 977 GFSFDG-------------ADAAGVDYALNRAIS-A------WYDGRDWFNSLCKRVMEQDWS 1019 (1036)
T ss_pred eEEeCC-------------CCHHHHHHHHHHHHh-h------hhhhHHHHHHHHHHHHHhhCC
Confidence 777754 488899999999997 2 444555556666655544444
No 111
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.01 E-value=0.0023 Score=63.48 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCceEeeccchh-HhhhccCCceeeccc--CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccccccc
Q 044012 345 DRGFIIKGWAPQ-VLILEHQAIGGFLTH--CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIW 421 (490)
Q Consensus 345 ~~nv~~~~~~p~-~~ll~~~~~~~~ItH--GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~ 421 (490)
..++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +.-..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC------
Confidence 457888887764 558999998444454 34568999999999999864321 234445 35567777754
Q ss_pred ccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 422 ATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 422 ~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
-+.+++.++|.++++ +.+....+.+++++.++++.
T Consensus 330 -------~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 330 -------GDIEALAEAIIELLN-DPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred -------CcHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHhh
Confidence 478999999999998 44444567777776655554
No 112
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.01 E-value=0.012 Score=58.43 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=52.4
Q ss_pred CCceEeeccchhHh---hhccCCceeec------ccCCh-hHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeec
Q 044012 345 DRGFIIKGWAPQVL---ILEHQAIGGFL------THCGW-NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVG 414 (490)
Q Consensus 345 ~~nv~~~~~~p~~~---ll~~~~~~~~I------tHGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~ 414 (490)
.+||.+.+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|..+. ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 46999999998654 67888883332 22332 468999999999998753 2223 2333 33332
Q ss_pred cccccccccCCCCccchhHHHHHHHHHhc
Q 044012 415 NEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 415 ~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
. -+.+++.++|.+++.
T Consensus 324 ~-------------~d~~~~~~ai~~~l~ 339 (373)
T cd04950 324 A-------------DDPEEFVAAIEKALL 339 (373)
T ss_pred C-------------CCHHHHHHHHHHHHh
Confidence 2 378999999999876
No 113
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.77 E-value=0.00031 Score=61.30 Aligned_cols=146 Identities=18% Similarity=0.257 Sum_probs=88.4
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHHc-----CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccc
Q 044012 280 PNSVLYICFGSLTRFSKEQTSEIAAALKES-----GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWA 354 (490)
Q Consensus 280 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~ 354 (490)
++..+++..|.... ...+..+++++..+ ..-.++.+|.. ..... +- ...+.. ....++.+.+++
T Consensus 13 ~~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~---~~~~~----~~-~~~~~~-~~~~~i~~~~~~ 81 (172)
T PF00534_consen 13 DKKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDG---EYKKE----LK-NLIEKL-NLKENIIFLGYV 81 (172)
T ss_dssp TTSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHC---CHHHH----HH-HHHHHT-TCGTTEEEEESH
T ss_pred CCCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEccc---ccccc----cc-cccccc-cccccccccccc
Confidence 34456666776543 34456666666642 33345555533 11001 10 111111 114589999998
Q ss_pred h---hHhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCC
Q 044012 355 P---QVLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSP 427 (490)
Q Consensus 355 p---~~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~ 427 (490)
+ ...++..+++ +|+. |...++.||+.+|+|+|+. |...+...+ +..+.|..++.
T Consensus 82 ~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~------------ 142 (172)
T PF00534_consen 82 PDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDP------------ 142 (172)
T ss_dssp SHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEEST------------
T ss_pred ccccccccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCC------------
Confidence 7 3568889998 7766 6677999999999999975 456666666 46666877764
Q ss_pred ccchhHHHHHHHHHhccCcHHHHHHHHHHH
Q 044012 428 VINRGNIKNAICVVMDNDDQEAVKMRKKAN 457 (490)
Q Consensus 428 ~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~ 457 (490)
-+.+++.++|.++++ +.++...+.++++
T Consensus 143 -~~~~~l~~~i~~~l~-~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 143 -NDIEELADAIEKLLN-DPELRQKLGKNAR 170 (172)
T ss_dssp -TSHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHC-CHHHHHHHHHHhc
Confidence 389999999999998 4233344444444
No 114
>PRK14099 glycogen synthase; Provisional
Probab=97.76 E-value=0.058 Score=55.51 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=30.7
Q ss_pred CCcceEEEEcC-----C-CCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPY-----I-APGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~-----~-~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
|++|||+|++. . +.|=-.-+-.|.++|+++||+|.+++|..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 36799999872 1 23333446788999999999999999843
No 115
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.76 E-value=0.013 Score=60.37 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=89.8
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHHc-----CCceEEEEccCCCCCCchhhhccCchhHHHhhc--cCCCceEeeccch
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKES-----GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVR--RNDRGFIIKGWAP 355 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~nv~~~~~~p 355 (490)
.+++..|.+. +...+..+++|+..+ +.+ +..+|.. .... .+.+.+. ...++|.+.++.+
T Consensus 320 ~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~-l~i~G~G---~~~~--------~l~~~i~~~~l~~~V~f~G~~~ 385 (500)
T TIGR02918 320 FSIITASRLA--KEKHIDWLVKAVVKAKKSVPELT-FDIYGEG---GEKQ--------KLQKIINENQAQDYIHLKGHRN 385 (500)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeE-EEEEECc---hhHH--------HHHHHHHHcCCCCeEEEcCCCC
Confidence 4555567654 344566677776542 233 3445554 2111 1222111 0145788889988
Q ss_pred hHhhhccCCceeecc---cCC-hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccc-
Q 044012 356 QVLILEHQAIGGFLT---HCG-WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVIN- 430 (490)
Q Consensus 356 ~~~ll~~~~~~~~It---HGG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t- 430 (490)
...+++.+++ +|. .-| ..++.||+++|+|+|+.-.. ..+...+ +.-.-|..++... ..-+
T Consensus 386 ~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI-~~g~nG~lv~~~~---------~~~d~ 450 (500)
T TIGR02918 386 LSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFI-EDNKNGYLIPIDE---------EEDDE 450 (500)
T ss_pred HHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHc-cCCCCEEEEeCCc---------cccch
Confidence 8889999998 664 233 46899999999999997542 1234444 3433566665210 0112
Q ss_pred ---hhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 431 ---RGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 431 ---~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
.++|+++|.++++ + +....|.+++.+.++++.
T Consensus 451 ~~~~~~la~~I~~ll~-~-~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 451 DQIITALAEKIVEYFN-S-NDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred hHHHHHHHHHHHHHhC-h-HHHHHHHHHHHHHHHhcC
Confidence 7889999999996 3 344567777776655543
No 116
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.67 E-value=0.017 Score=59.39 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=64.7
Q ss_pred CCceEeeccchhHhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhh-----c-cceeec
Q 044012 345 DRGFIIKGWAPQVLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVL-----K-FGLPVG 414 (490)
Q Consensus 345 ~~nv~~~~~~p~~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~-----G-~G~~l~ 414 (490)
.++|.+.+.....++++.+++ +|.- |-.+++.||+++|+|+|+- |.......+ +.. | .|...+
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC
Confidence 468888886667788999998 5532 4456899999999999984 444455555 342 2 677765
Q ss_pred cccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044012 415 NEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANH 458 (490)
Q Consensus 415 ~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~ 458 (490)
. -+.+++.++|.++++ +.+....+.+++++
T Consensus 426 ~-------------~d~~~la~ai~~ll~-~~~~~~~~~~~a~~ 455 (475)
T cd03813 426 P-------------ADPEALARAILRLLK-DPELRRAMGEAGRK 455 (475)
T ss_pred C-------------CCHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 4 478999999999998 43333344444443
No 117
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.66 E-value=0.033 Score=58.15 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHc-----CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhH-hhhccCCceee
Q 044012 295 SKEQTSEIAAALKES-----GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQV-LILEHQAIGGF 368 (490)
Q Consensus 295 ~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~~~~~ 368 (490)
..+.+..+++|++.+ +.+ ++.+|.. ....+ +........-++.+.++.++. ++++.+++ |
T Consensus 557 ~EKGld~LLeAla~L~~~~pnvr-LvIVGDG---P~ree--------Le~la~eLgL~V~FLG~~dd~~~lyasaDV--F 622 (794)
T PLN02501 557 WAKGYRELIDLLAKHKNELDGFN-LDVFGNG---EDAHE--------VQRAAKRLDLNLNFLKGRDHADDSLHGYKV--F 622 (794)
T ss_pred ccCCHHHHHHHHHHHHhhCCCeE-EEEEcCC---ccHHH--------HHHHHHHcCCEEEecCCCCCHHHHHHhCCE--E
Confidence 345577777777642 333 4445655 22112 222221112246666777754 58999998 7
Q ss_pred cc----cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhcc
Q 044012 369 LT----HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDN 444 (490)
Q Consensus 369 It----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n 444 (490)
|. -|=.+++.||+++|+|+|+.-..+.. . + ..|.+..+ .-+.+++.++|.++|++
T Consensus 623 VlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V--~~g~nGll--------------~~D~EafAeAI~~LLsd 681 (794)
T PLN02501 623 INPSISDVLCTATAEALAMGKFVVCADHPSNE----F-F--RSFPNCLT--------------YKTSEDFVAKVKEALAN 681 (794)
T ss_pred EECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-E--eecCCeEe--------------cCCHHHHHHHHHHHHhC
Confidence 65 23356899999999999998765422 1 3 12333233 13689999999999983
No 118
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.66 E-value=0.0017 Score=64.88 Aligned_cols=140 Identities=20% Similarity=0.224 Sum_probs=77.5
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHH-hhccCCCceEeeccchhH
Q 044012 279 KPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFED-EVRRNDRGFIIKGWAPQV 357 (490)
Q Consensus 279 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~nv~~~~~~p~~ 357 (490)
+++.++|.||.+.....++.+..-.+-|++.+.-.+|..... ... +..+-..+.+ .++ ++.+.+.++.|+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~---~~~---~~~l~~~~~~~Gv~--~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFP---ASG---EARLRRRFAAHGVD--PDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETS---TTH---HHHHHHHHHHTTS---GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCC---HHH---HHHHHHHHHHcCCC--hhhEEEcCCCCHH
Confidence 366799999999999999999999999999888888887655 211 0001111211 123 5678888877754
Q ss_pred h---hhccCCceeec---ccCChhHHHHHHHhCCcEeeccCcc-cccchHHHHHHhhccceeeccccccccccCCCCccc
Q 044012 358 L---ILEHQAIGGFL---THCGWNSILEGVSAGVPMVTWPVFA-EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVIN 430 (490)
Q Consensus 358 ~---ll~~~~~~~~I---tHGG~~s~~eal~~GvP~l~~P~~~-DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t 430 (490)
+ .+..+|+ ++ ..+|.+|++|||+.|||+|.+|--. =...-|..+ ..+|+.-.+ .-+
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElI--------------A~s 416 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELI--------------ADS 416 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB---------------SS
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhc--------------CCC
Confidence 4 4455666 43 5678999999999999999999432 223334445 466666544 345
Q ss_pred hhHHHHHHHHHhc
Q 044012 431 RGNIKNAICVVMD 443 (490)
Q Consensus 431 ~~~l~~~i~~~l~ 443 (490)
.++-.+.-.++-+
T Consensus 417 ~~eYv~~Av~La~ 429 (468)
T PF13844_consen 417 EEEYVEIAVRLAT 429 (468)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 5555555555655
No 119
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.64 E-value=0.0019 Score=64.46 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCceEeeccchhH---hhhccCCceeeccc----CCh-hHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccc
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLTH----CGW-NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNE 416 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~ItH----GG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 416 (490)
..++.+.+++|+. .+++.+++ +|.- .|. .++.||+++|+|+|+... ..+...+ +.-..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv-~~~~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFV-LEGITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhc-ccCCceEEEeC-
Confidence 4578888999854 46889998 6642 343 578899999999999764 3345555 45556765532
Q ss_pred cccccccCCCCccchhHHHHHHHHHhc
Q 044012 417 IWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 417 ~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
..+.+++.++|.++++
T Consensus 328 -----------~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 328 -----------PMTSDSIISDINRTLA 343 (380)
T ss_pred -----------CCCHHHHHHHHHHHHc
Confidence 2578999999999998
No 120
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.57 E-value=0.0055 Score=59.50 Aligned_cols=45 Identities=4% Similarity=0.079 Sum_probs=41.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~ 53 (490)
||+++-....|++.-..++.++|+++ +.+|++++.+.+.+.++..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~ 47 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH 47 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC
Confidence 68999999999999999999999998 9999999999888888765
No 121
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.55 E-value=0.0017 Score=65.44 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=64.0
Q ss_pred CCceEeeccchhHh---hhccCCceeecccC----ChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQVL---ILEHQAIGGFLTHC----GWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~~~---ll~~~~~~~~ItHG----G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
..+|.+.+|+++.+ ++..+++.+||... -.+++.||+++|+|+|+-. -......+ +..+.|..+..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i-~~~~~G~l~~~-- 360 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIV-DNGGNGLLLSK-- 360 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHh-cCCCcEEEeCC--
Confidence 44788999999764 44443333376443 2568999999999999854 34466666 45447877754
Q ss_pred ccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANH 458 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~ 458 (490)
.-+.+++.++|.++++ +.+....|+++|++
T Consensus 361 ----------~~~~~~la~~I~~ll~-~~~~~~~m~~~ar~ 390 (407)
T cd04946 361 ----------DPTPNELVSSLSKFID-NEEEYQTMREKARE 390 (407)
T ss_pred ----------CCCHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 2578999999999998 42332344444443
No 122
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.00085 Score=53.89 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=68.8
Q ss_pred EEEEeCCcccCCHHH--HHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeecc--ch-hHh
Q 044012 284 LYICFGSLTRFSKEQ--TSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGW--AP-QVL 358 (490)
Q Consensus 284 v~vs~GS~~~~~~~~--~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~--~p-~~~ 358 (490)
|||+.||....=... ..++.+-.+....++|+.+|+. + . .|- ...++.+| -+ ...
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~---d----~---kpv----------agl~v~~F~~~~kiQs 61 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG---D----I---KPV----------AGLRVYGFDKEEKIQS 61 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC---C----c---ccc----------cccEEEeechHHHHHH
Confidence 789999974310111 1123333333456899999987 2 1 220 12444444 34 455
Q ss_pred hhccCCceeecccCChhHHHHHHHhCCcEeeccCcc--------cccchHHHHHHhhccceee
Q 044012 359 ILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFA--------EQFNNEKLVTQVLKFGLPV 413 (490)
Q Consensus 359 ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~rv~e~~G~G~~l 413 (490)
+...+.+ +|+|+|.||+..++..++|.+++|-.- +|--.|..++ +.+.=...
T Consensus 62 li~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~ 121 (161)
T COG5017 62 LIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVAC 121 (161)
T ss_pred HhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEE
Confidence 6666666 999999999999999999999999532 4667777775 66655444
No 123
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.54 E-value=0.021 Score=51.66 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=37.5
Q ss_pred CCceEeeccchh----HhhhccCCceeecccCC----hhHHHHHHHhCCcEeeccCccc
Q 044012 345 DRGFIIKGWAPQ----VLILEHQAIGGFLTHCG----WNSILEGVSAGVPMVTWPVFAE 395 (490)
Q Consensus 345 ~~nv~~~~~~p~----~~ll~~~~~~~~ItHGG----~~s~~eal~~GvP~l~~P~~~D 395 (490)
..|+.+.++++. ..++..+++ +|+-.. .+++.||+.+|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 568998888632 334545888 777766 7899999999999999887553
No 124
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.45 E-value=0.053 Score=50.53 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=70.9
Q ss_pred CCCCChHHHHHHHHHHHHCCCeEEEEeCC--cchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCChhh
Q 044012 16 IAPGHMVPMVDMARLFAANGIQVTIILTT--MNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTSTPET 93 (490)
Q Consensus 16 ~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 93 (490)
+-.-|+..+..|-.+|..+||+|.+.+-+ ...+.+... +|.+.++. ..+. ..
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Ig--------k~g~---------~t 61 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIG--------KHGG---------VT 61 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeec--------ccCC---------cc
Confidence 44568888999999999999999887742 223444444 67777774 1111 11
Q ss_pred HhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecc
Q 044012 94 TKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (490)
+...+.........|.+++.+.+||+.+. -.++.+..+|-.+|+|.|.+.-.
T Consensus 62 l~~Kl~~~~eR~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 62 LKEKLLESAERVYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 11111122233456777788899999999 56778999999999999997544
No 125
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.38 E-value=0.19 Score=50.49 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCce-EEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccch-h---HhhhccCCceeecc-
Q 044012 297 EQTSEIAAALKESGHSF-IWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAP-Q---VLILEHQAIGGFLT- 370 (490)
Q Consensus 297 ~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p-~---~~ll~~~~~~~~It- 370 (490)
.....+++|+..++..+ ++.+|.. .. . . ..++...++.. + ..+++.+++ ||.
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g---~~----~--~-----------~~~v~~~g~~~~~~~l~~~y~~aDv--fV~p 313 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKF---SP----F--T-----------AGNVVNHGFETDKRKLMSALNQMDA--LVFS 313 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCC---Cc----c--c-----------ccceEEecCcCCHHHHHHHHHhCCE--EEEC
Confidence 44677889998865433 4555543 10 0 0 23455555542 2 446667887 665
Q ss_pred ---cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHH
Q 044012 371 ---HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAIC 439 (490)
Q Consensus 371 ---HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~ 439 (490)
-|-.+++.||+++|+|+|.....+ ....+ +. +-|+.++.. +.++|+++++
T Consensus 314 S~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~~-------------d~~~La~~~~ 366 (405)
T PRK10125 314 SRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSEE-------------EVLQLAQLSK 366 (405)
T ss_pred CccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECCC-------------CHHHHHhccC
Confidence 344568999999999999987654 33334 23 568877654 6677776543
No 126
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.37 E-value=0.0025 Score=53.39 Aligned_cols=103 Identities=13% Similarity=0.218 Sum_probs=67.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMST 88 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (490)
||++++.....| ...+++.|.++||+|++++.....+..... .++.+..++.+. .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~~------------k-- 55 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSPR------------K-- 55 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCCC------------C--
Confidence 577887666555 557899999999999999996654333322 367777664210 0
Q ss_pred CChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc---chHHHHHHhC-CCeEEEec
Q 044012 89 STPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP---WTVSIAEELG-IPRLAFTG 145 (490)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~---~~~~~A~~lg-iP~v~~~~ 145 (490)
..+ ... ... .+...+++.+||+|.+..... .+..++...+ +|.|....
T Consensus 56 ---~~~----~~~-~~~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 56 ---SPL----NYI-KYF-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred ---ccH----HHH-HHH-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 100 111 122 778889999999998776553 2445677888 88886433
No 127
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.29 E-value=0.048 Score=53.75 Aligned_cols=109 Identities=12% Similarity=0.079 Sum_probs=72.7
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhhhcccccCCCceE-EEEeeCCCCcCCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDSRLGREIS-LRILRFPSQEAGLPEG 81 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~ 81 (490)
.+++||+++-....|++.-..++.++|+++ +.+|++++.+.+.+.++.. + .++ ++.++ . ...
T Consensus 3 ~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------P-~id~vi~~~--~-----~~~ 67 (352)
T PRK10422 3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN-------P-EINALYGIK--N-----KKA 67 (352)
T ss_pred CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC-------C-CceEEEEec--c-----ccc
Confidence 456899999999999999999999999998 9999999999888877765 1 232 22221 0 000
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.....+ .....+...|++.++|++|.-........++...|.|..+-
T Consensus 68 ----------~~~~~~-----~~~~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 68 ----------GASEKI-----KNFFSLIKVLRANKYDLIVNLTDQWMVALLVRLLNARVKIS 114 (352)
T ss_pred ----------cHHHHH-----HHHHHHHHHHhhCCCCEEEEcccchHHHHHHHHhCCCeEEe
Confidence 000001 01123345567779999996554444566777778877553
No 128
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.17 E-value=0.0017 Score=54.01 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=50.6
Q ss_pred CCceEeeccchh-HhhhccCCceeeccc---CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccc
Q 044012 345 DRGFIIKGWAPQ-VLILEHQAIGGFLTH---CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKI 420 (490)
Q Consensus 345 ~~nv~~~~~~p~-~~ll~~~~~~~~ItH---GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 420 (490)
.+|+.+.+|++. .++++.+++.+..+. |-.+++.|++.+|+|+|+.+. .....+ +..|.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~-~~~~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIV-EEDGCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhe-eecCCeEEE-C-----
Confidence 448999999874 668999999665442 235899999999999999876 122233 356777776 3
Q ss_pred cccCCCCccchhHHHHHHHHHhc
Q 044012 421 WATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 421 ~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
-+++++.++|.++++
T Consensus 120 --------~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 120 --------NDPEELAEAIERLLN 134 (135)
T ss_dssp --------T-HHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHhc
Confidence 389999999999987
No 129
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.06 E-value=0.0046 Score=60.42 Aligned_cols=110 Identities=16% Similarity=0.294 Sum_probs=78.8
Q ss_pred CCceEeeccchhHhh---hccCCceeeccc-------CCh------hHHHHHHHhCCcEeeccCcccccchHHHHHHhhc
Q 044012 345 DRGFIIKGWAPQVLI---LEHQAIGGFLTH-------CGW------NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLK 408 (490)
Q Consensus 345 ~~nv~~~~~~p~~~l---l~~~~~~~~ItH-------GG~------~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G 408 (490)
.+||.+.+|+|+.++ |.. +.+++... +.+ +-+.+.+++|+|+|+. ++...+..| ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 568999999998765 343 33222211 111 2377889999999985 557788888 7999
Q ss_pred cceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 044012 409 FGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIE 482 (490)
Q Consensus 409 ~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 482 (490)
+|+.++ +.+++.+++.++. .++...|++|+++++++++ .|.-...++.+++.
T Consensus 280 ~G~~v~---------------~~~el~~~l~~~~---~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD---------------SLEELPEIIDNIT---EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC---------------CHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHh
Confidence 999984 3468999998864 3344689999999999998 57666666666654
No 130
>PLN02939 transferase, transferring glycosyl groups
Probab=96.92 E-value=0.91 Score=49.69 Aligned_cols=84 Identities=7% Similarity=0.045 Sum_probs=54.4
Q ss_pred CCceEeeccchhH---hhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcc--cccch--HHHHHHhhccceee
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFA--EQFNN--EKLVTQVLKFGLPV 413 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~rv~e~~G~G~~l 413 (490)
.++|.+..+.+.. .+++.+|+ ||.- +-..++.||+++|+|.|+....+ |...+ ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4568888887754 58999998 7742 33458999999999999876543 22211 11110122456666
Q ss_pred ccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 414 GNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 414 ~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
+. -++++|..+|.+++.
T Consensus 914 ~~-------------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT-------------PDEQGLNSALERAFN 930 (977)
T ss_pred cC-------------CCHHHHHHHHHHHHH
Confidence 43 478889999988764
No 131
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.87 E-value=0.11 Score=51.08 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=71.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhhhcccccCCCceE-EEEeeCCCCcCCCCCCccCC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDSRLGREIS-LRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 85 (490)
||+++-..+.|++.-...+.++|+++ +.+|++++.+.+.+.++.. + .+. +..++.. .. .
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------p-~vd~vi~~~~~-------~~--~- 62 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN-------P-DINALYGLDRK-------KA--K- 62 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC-------C-CccEEEEeChh-------hh--c-
Confidence 68999999999999999999999997 8999999999888877765 1 232 2222200 00 0
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.....+. .. -.+...|++.++|++|.-........++...|.|..+-
T Consensus 63 ------~~~~~~~----~~-~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 63 ------AGERKLA----NQ-FHLIKVLRANRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred ------chHHHHH----HH-HHHHHHHHhCCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 0000011 11 12345567779999996655556777888889997553
No 132
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.66 E-value=0.0034 Score=53.52 Aligned_cols=95 Identities=18% Similarity=0.318 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCChhhHhhHHHHHH
Q 044012 23 PMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTSTPETTKKLFPALE 102 (490)
Q Consensus 23 p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (490)
-+..|+++|.++||+|++++........+.. ..++.+..++.+... . .. ... .
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~---~~------~~~-~------ 58 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLPLPRRP----W---PL------RLL-R------ 58 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE--S-SS----S---GG------GHC-C------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEeccCCccc----h---hh------hhH-H------
Confidence 4678999999999999999976655532211 236777777644221 0 00 000 0
Q ss_pred hhHHHHHHHh--hcCCCcEEEEcCCCc-chHHHHH-HhCCCeEEEec
Q 044012 103 LLRPEIEKLF--REQNPNCIVSDNLFP-WTVSIAE-ELGIPRLAFTG 145 (490)
Q Consensus 103 ~~~~~l~~~l--~~~~pD~VI~D~~~~-~~~~~A~-~lgiP~v~~~~ 145 (490)
....+..++ ++.+||+|.+..... ....++. ..++|+|....
T Consensus 59 -~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 59 -FLRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp -HHHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred -HHHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 113344445 678999999887432 2333444 88999988643
No 133
>PHA01633 putative glycosyl transferase group 1
Probab=96.56 E-value=0.029 Score=54.31 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=63.1
Q ss_pred CCceEee---ccchh---HhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccC------cccc------cchHHH
Q 044012 345 DRGFIIK---GWAPQ---VLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPV------FAEQ------FNNEKL 402 (490)
Q Consensus 345 ~~nv~~~---~~~p~---~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~------~~DQ------~~na~r 402 (490)
++++.+. +++++ ..+++.+++ ||.- |=..++.||+++|+|+|+--. .+|+ .++...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 5578877 44554 467888898 7752 335589999999999998633 2333 344443
Q ss_pred HHH-hhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 403 VTQ-VLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 403 v~e-~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
.++ ..|.|...+ ..++++++++|.+++. ..++ +...+++++.++++.
T Consensus 278 ~~~~~~g~g~~~~-------------~~d~~~la~ai~~~~~-~~~~-~~~~~~~~~~a~~f~ 325 (335)
T PHA01633 278 YYDKEHGQKWKIH-------------KFQIEDMANAIILAFE-LQDR-EERSMKLKELAKKYD 325 (335)
T ss_pred hcCcccCceeeec-------------CCCHHHHHHHHHHHHh-ccCh-hhhhHHHHHHHHhcC
Confidence 321 234554543 4699999999999855 2111 233445555555443
No 134
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.50 E-value=0.0055 Score=47.46 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=45.7
Q ss_pred ccccccccCCCCCCeEEEEEeCCcccC---CH--HHHHHHHHHHHHcCCceEEEEccC
Q 044012 268 KHSCLSWLNSRKPNSVLYICFGSLTRF---SK--EQTSEIAAALKESGHSFIWVVGKI 320 (490)
Q Consensus 268 ~~~~~~~l~~~~~~~~v~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~ 320 (490)
+..+..|+...+.++.|+||+||.... .. ..+..++++++.++..+|..++..
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 577889999988999999999998763 32 468889999999999999999866
No 135
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.40 E-value=0.64 Score=45.08 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=41.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~ 53 (490)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH 48 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC
Confidence 689999999999999999999999997 9999999998877777654
No 136
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.35 E-value=0.65 Score=45.63 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=71.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
|||+++-..+.|++.-...+.++|+++ +.+|++++.+.+.+.++.. + .++-+ ++++. ....
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------P-~vd~v-i~~~~-----~~~~--- 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM-------P-EVNEA-IPMPL-----GHGA--- 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC-------C-ccCEE-Eeccc-----ccch---
Confidence 589999999999999999999999997 9999999998888888775 1 23221 11110 0000
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEE
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLA 142 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~ 142 (490)
.. + .....+...|++.++|++|.=....-...++...|+|.-+
T Consensus 64 ------~~---~-----~~~~~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 ------LE---I-----GERRRLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ------hh---h-----HHHHHHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 00 0 0112344567777999999765555566777888888654
No 137
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.11 Score=52.60 Aligned_cols=109 Identities=22% Similarity=0.259 Sum_probs=79.2
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHH-hhccCCCceEeeccch--
Q 044012 279 KPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFED-EVRRNDRGFIIKGWAP-- 355 (490)
Q Consensus 279 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~nv~~~~~~p-- 355 (490)
+++.+||+||+......++.+..-++-++..+--++|..+++ .++ +..+.+-+.+.+ .++ ++.+++.+-.|
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~---~~~-~~~~~l~~la~~~Gv~--~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG---DDA-EINARLRDLAEREGVD--SERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC---CcH-HHHHHHHHHHHHcCCC--hhheeecCCCCCH
Confidence 477899999999999999999998888999899999998875 221 222212112221 234 66777777666
Q ss_pred -hHhhhccCCceeec---ccCChhHHHHHHHhCCcEeeccCccccc
Q 044012 356 -QVLILEHQAIGGFL---THCGWNSILEGVSAGVPMVTWPVFAEQF 397 (490)
Q Consensus 356 -~~~ll~~~~~~~~I---tHGG~~s~~eal~~GvP~l~~P~~~DQ~ 397 (490)
+..-+.-+|+ |+ --||+.|..|+|..|||+|..+ ++|+
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 3445555666 65 4699999999999999999987 7776
No 138
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.18 E-value=0.35 Score=47.24 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=73.5
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
||||+++-....|++.-.+.+-+.|+++ +.++++++.+.+.+.+.... .+.-+.+- . ....
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p--------~I~~vi~~-~------~~~~-- 63 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNP--------EIDKVIII-D------KKKK-- 63 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcCh--------Hhhhhccc-c------cccc--
Confidence 5899999999999999999999999998 69999999998888877651 22211110 0 0000
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEE
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLA 142 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~ 142 (490)
. ..+ .....+...+++.++|+||.=....-...++...++|.-.
T Consensus 64 -------~--~~~-----~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 64 -------G--LGL-----KERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred -------c--cch-----HHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 000 2234566667777999999776666566677788888655
No 139
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.17 E-value=0.22 Score=50.10 Aligned_cols=182 Identities=12% Similarity=0.170 Sum_probs=102.2
Q ss_pred ccccCCCCCCeEEEEEeCCcccC------C-H---HHHHHHHHHHHHcCCceEEEEccCCC---CCCchhhhccCchhHH
Q 044012 272 LSWLNSRKPNSVLYICFGSLTRF------S-K---EQTSEIAAALKESGHSFIWVVGKILK---TDDDQEEESWLPDGFE 338 (490)
Q Consensus 272 ~~~l~~~~~~~~v~vs~GS~~~~------~-~---~~~~~~~~al~~~~~~~i~~~~~~~~---~~~~~~~~~~~p~~~~ 338 (490)
..|+...+.+++|.||.-..... . . +.+..+++.+.+.++++++..-..-. ..++.. .-..+.
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~----~~~~l~ 300 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRM----VALNLR 300 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHH----HHHHHH
Confidence 34554433456788886654311 1 1 22334445554568887766532100 011101 001222
Q ss_pred HhhccCCCceEe-e-ccchh--HhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhcccee-e
Q 044012 339 DEVRRNDRGFII-K-GWAPQ--VLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLP-V 413 (490)
Q Consensus 339 ~~~~~~~~nv~~-~-~~~p~--~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~-l 413 (490)
+.+.. +.++++ . ++-|. ..++.+|++ +|..= .=+..-|+..|||.+.++. | +....-+ +.+|.... .
T Consensus 301 ~~~~~-~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~ 372 (426)
T PRK10017 301 QHVSD-PARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAI 372 (426)
T ss_pred Hhccc-ccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEe
Confidence 23321 333332 2 23333 478999998 88632 2245668899999999997 3 4444455 58888765 5
Q ss_pred ccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 044012 414 GNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDIRL 486 (490)
Q Consensus 414 ~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 486 (490)
+.. +++.++|.+.+.++++|. +.++++.++--+++++ .+.+.+.++++.|.+
T Consensus 373 ~~~-----------~l~~~~Li~~v~~~~~~r----~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~ 424 (426)
T PRK10017 373 DIR-----------HLLDGSLQAMVADTLGQL----PALNARLAEAVSRERQ------TGMQMVQSVLERIGE 424 (426)
T ss_pred chh-----------hCCHHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 555 889999999999999854 4666665555555552 122456666666544
No 140
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.13 E-value=0.72 Score=45.01 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=69.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
||+++-..+.|++.-...+.++|++. +.+|++++.+...+.++.. + .++-+ +.++. ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------p-~id~v-~~~~~-----~~~~---- 62 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM-------P-EIRQA-IDMPL-----GHGA---- 62 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC-------c-hhcee-eecCC-----cccc----
Confidence 68999999999999999999999987 9999999998877777765 1 22211 11110 0000
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEE
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLA 142 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~ 142 (490)
..+ .....+...+++.++|++|.-....-...++...|+|.-+
T Consensus 63 ----~~~---------~~~~~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 63 ----LEL---------TERRRLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ----hhh---------hHHHHHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 000 0112344556777999999876555566677788888643
No 141
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.05 E-value=0.13 Score=52.37 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=81.7
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhH-
Q 044012 279 KPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQV- 357 (490)
Q Consensus 279 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~- 357 (490)
+++-+||.+|--.-..+++.++.-.+-|.+.+-.++|....+...+. ....+ -++.+=.++.+.+.+-++..
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~--rf~ty-----~~~~Gl~p~riifs~va~k~e 828 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQ--RFRTY-----AEQLGLEPDRIIFSPVAAKEE 828 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchH--HHHHH-----HHHhCCCccceeeccccchHH
Confidence 46678999998888899999999889999999999999987621111 11110 01111115566665544422
Q ss_pred ----hhhccCCceeecccCChhHHHHHHHhCCcEeeccCccc-ccchHHHHHHhhccceeec
Q 044012 358 ----LILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAE-QFNNEKLVTQVLKFGLPVG 414 (490)
Q Consensus 358 ----~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~D-Q~~na~rv~e~~G~G~~l~ 414 (490)
-.|..-.+.-+.|+ |..|.++.|+.|||||.+|.-.- ...-+..++ .+|+|-.+-
T Consensus 829 Hvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~-~~Gl~hlia 888 (966)
T KOG4626|consen 829 HVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLT-ALGLGHLIA 888 (966)
T ss_pred HHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHH-HcccHHHHh
Confidence 23332223336775 78999999999999999997432 233334453 788887553
No 142
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.03 E-value=1.4 Score=41.67 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=40.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~ 53 (490)
||+++-..+.|++.-+.++.++|+++ +-+|++++.+...+.++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~ 47 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM 47 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC
Confidence 68999999999999999999999997 4899999999888877765
No 143
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.89 E-value=0.044 Score=48.68 Aligned_cols=121 Identities=14% Similarity=0.208 Sum_probs=66.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
||||+..=-+. +---+.+|+++|.+.||+|+++.+...++-....... ...++......+. .+.+...+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~----~~pl~~~~~~~~~----~~~~~~~~-- 69 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITL----HKPLRVTEVEPGH----DPGGVEAY-- 69 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--S----SSEEEEEEEE-TT----CCSTTEEE--
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecC----CCCeEEEEEEecc----cCCCCCEE--
Confidence 68888875555 4445889999997778999999998877765554222 2244444332100 01111000
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEc----------CCCc---chHHHHHHhCCCeEEEecc
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSD----------NLFP---WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D----------~~~~---~~~~~A~~lgiP~v~~~~~ 146 (490)
.....-..| ..-.+..++.+.+||+||+- .++. .+..-|...|||.|.++..
T Consensus 70 -----~v~GTPaDc--v~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 70 -----AVSGTPADC--VKLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp -----EESS-HHHH--HHHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred -----EEcCcHHHH--HHHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 001122222 12244455655579999963 2222 3566777889999998665
No 144
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.83 E-value=1.9 Score=41.50 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=41.1
Q ss_pred hhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccc----hHHHHHHhhccceeec
Q 044012 355 PQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFN----NEKLVTQVLKFGLPVG 414 (490)
Q Consensus 355 p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~----na~rv~e~~G~G~~l~ 414 (490)
|+...|+.++. .+||---.+-++||+..|+|+.++|+-. +.. -.+.+ ++.|+-..+.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECC
Confidence 68889998886 5677667888999999999999999876 333 22334 3455554443
No 145
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.81 E-value=0.36 Score=49.70 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=47.7
Q ss_pred CCceEeeccchh-HhhhccCCceeecc---cCC-hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccc
Q 044012 345 DRGFIIKGWAPQ-VLILEHQAIGGFLT---HCG-WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNE 416 (490)
Q Consensus 345 ~~nv~~~~~~p~-~~ll~~~~~~~~It---HGG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 416 (490)
.++|.+.+|... ..+|+.+++ ||. .-| .+++.||+++|+|+|+... ..+...+ +.-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC
Confidence 468999998653 558999999 875 234 6699999999999998754 3456666 465667777554
No 146
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.15 E-value=0.24 Score=42.76 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=32.6
Q ss_pred hhHHHHHHHhhc-CCCcEEEEcCCCcchHHHHHHh-CCCeEEEecc
Q 044012 103 LLRPEIEKLFRE-QNPNCIVSDNLFPWTVSIAEEL-GIPRLAFTGS 146 (490)
Q Consensus 103 ~~~~~l~~~l~~-~~pD~VI~D~~~~~~~~~A~~l-giP~v~~~~~ 146 (490)
.....+.++.++ ..||+||...-...++-+-+.+ ++|.+.+.-.
T Consensus 52 av~~a~~~L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 52 AVARAARQLRAQGFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 334455555544 7899999998777788899999 8999887443
No 147
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=94.96 E-value=0.11 Score=44.95 Aligned_cols=101 Identities=12% Similarity=0.195 Sum_probs=51.5
Q ss_pred CCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCChhhHhh
Q 044012 17 APGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTSTPETTKK 96 (490)
Q Consensus 17 ~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (490)
..|=-.-+..|+++|+++||+|+++++.......... ........ ... . ......
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~---------~~~~~~~~---------~~~---~----~~~~~~ 65 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEEL---------VKIFVKIP---------YPI---R----KRFLRS 65 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTE---------EEE---TT----------SS---T----SS--HH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhc---------cceeeeee---------ccc---c----cccchh
Confidence 4466667899999999999999999875322222210 00111100 000 0 011101
Q ss_pred HHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEecccH
Q 044012 97 LFPALELLRPEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFTGSGF 148 (490)
Q Consensus 97 ~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 148 (490)
+ .....+.+.+++.+||+|-+..... +....+-. ++|.+.......
T Consensus 66 ~-----~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 66 F-----FFMRRLRRLIKKEKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp H-----HHHHHHHHHHHHHT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred H-----HHHHHHHHHHHHcCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 1 1234566667777999995554333 33333333 999988766543
No 148
>PHA01630 putative group 1 glycosyl transferase
Probab=94.61 E-value=0.7 Score=45.01 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=28.3
Q ss_pred cchh---HhhhccCCceeec--cc-CC-hhHHHHHHHhCCcEeeccCc
Q 044012 353 WAPQ---VLILEHQAIGGFL--TH-CG-WNSILEGVSAGVPMVTWPVF 393 (490)
Q Consensus 353 ~~p~---~~ll~~~~~~~~I--tH-GG-~~s~~eal~~GvP~l~~P~~ 393 (490)
++|+ ..+++.+++ +| ++ .| ..++.||+++|+|+|+.-..
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 3554 447889998 65 22 22 56899999999999997643
No 149
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.00 E-value=0.59 Score=40.54 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=60.0
Q ss_pred CCCCCChHHHHHHHHHH-HHC-CCeEEEEeCCcchhhh--hhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCC
Q 044012 15 YIAPGHMVPMVDMARLF-AAN-GIQVTIILTTMNARRF--QNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTST 90 (490)
Q Consensus 15 ~~~~GHi~p~l~LA~~L-~~r-Gh~Vt~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 90 (490)
.++.||..-|+.|.+.+ .++ .++..+++..+..+.- ++.-.. .+....+..+|.. .+ ..
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~---~~~~~~~~~~~r~---------r~-v~---- 67 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKS---SSKRHKILEIPRA---------RE-VG---- 67 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHh---ccccceeeccceE---------EE-ec----
Confidence 47889999999999999 344 5666666655443322 211000 0000122332210 00 00
Q ss_pred hhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHh------CCCeEEEecc
Q 044012 91 PETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEEL------GIPRLAFTGS 146 (490)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l------giP~v~~~~~ 146 (490)
................. ..++.+.+||+||+..-.. ..+.+|..+ |.+.|.+-+.
T Consensus 68 q~~~~~~~~~l~~~~~~-~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 68 QSYLTSIFTTLRAFLQS-LRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred hhhHhhHHHHHHHHHHH-HHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 01111122222122222 2333455899999998555 477789999 9999987443
No 150
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.88 E-value=0.47 Score=36.25 Aligned_cols=83 Identities=12% Similarity=0.156 Sum_probs=49.1
Q ss_pred cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHH
Q 044012 371 HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAV 450 (490)
Q Consensus 371 HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~ 450 (490)
+|-..-+.|++++|+|+|+-.. ......+ .-|...-.- . +.+++.++|..+++|+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~----~~~~~~~~~-----------~-~~~el~~~i~~ll~~~----- 63 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF----EDGEHIITY-----------N-DPEELAEKIEYLLENP----- 63 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc----CCCCeEEEE-----------C-CHHHHHHHHHHHHCCH-----
Confidence 5556789999999999999864 2222222 113222221 3 8999999999999943
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 044012 451 KMRKKANHLKELAKKAVEEGGSSCNDLKALI 481 (490)
Q Consensus 451 ~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 481 (490)
..++ +++++.++-+.+..+....++.++
T Consensus 64 ~~~~---~ia~~a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 64 EERR---RIAKNARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHH---HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2222 223333333345666666666654
No 151
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=92.16 E-value=3.7 Score=41.55 Aligned_cols=138 Identities=7% Similarity=0.075 Sum_probs=82.1
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHHc-CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEe-eccch-h
Q 044012 280 PNSVLYICFGSLTRFSKEQTSEIAAALKES-GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFII-KGWAP-Q 356 (490)
Q Consensus 280 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~-~~~~p-~ 356 (490)
.+.+++++ +...+..+...++++ ++.+=+..+.. +.+.+.+. .. -+|+++ .++.+ .
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te------------~s~kL~~L-~~-y~nvvly~~~~~~~ 340 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE------------MSSKLMSL-DK-YDNVKLYPNITTQK 340 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc------------ccHHHHHH-Hh-cCCcEEECCcChHH
Confidence 44567765 245666666666663 45544332221 11122222 12 245554 44566 3
Q ss_pred -HhhhccCCceeecccCC--hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhH
Q 044012 357 -VLILEHQAIGGFLTHCG--WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGN 433 (490)
Q Consensus 357 -~~ll~~~~~~~~ItHGG--~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~ 433 (490)
.+++..|++-+-|+||+ ..++.||+.+|+|++..=.... +...+ .. |-.... -+.++
T Consensus 341 l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~~---g~l~~~-------------~~~~~ 400 (438)
T TIGR02919 341 IQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-AS---ENIFEH-------------NEVDQ 400 (438)
T ss_pred HHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-cC---CceecC-------------CCHHH
Confidence 67999999988999976 6699999999999998743321 22223 12 444433 36799
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 044012 434 IKNAICVVMDNDDQEAVKMRKKANHLKEL 462 (490)
Q Consensus 434 l~~~i~~~l~n~~~~~~~~~~~a~~l~~~ 462 (490)
+.++|.++|+++ ..++++..+-++.
T Consensus 401 m~~~i~~lL~d~----~~~~~~~~~q~~~ 425 (438)
T TIGR02919 401 LISKLKDLLNDP----NQFRELLEQQREH 425 (438)
T ss_pred HHHHHHHHhcCH----HHHHHHHHHHHHH
Confidence 999999999832 2455544443333
No 152
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=92.10 E-value=0.91 Score=41.61 Aligned_cols=113 Identities=17% Similarity=0.267 Sum_probs=65.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
|||++.-=-+ =|---+.+|+++|+ .+++|+++.+...++-+...+... .+++...+. .......+
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~----~Plr~~~~~---------~~~~av~G 65 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLH----EPLRVRQVD---------NGAYAVNG 65 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccc----cCceeeEec---------cceEEecC
Confidence 5666655222 23334778899998 999999999988776665542221 123333221 01111111
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcC----------CCc---chHHHHHHhCCCeEEEecc
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDN----------LFP---WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~----------~~~---~~~~~A~~lgiP~v~~~~~ 146 (490)
.-..| ..-.+..++++..||+||+-. .+. +++.=|..+|||.|.+|..
T Consensus 66 ---------TPaDC--V~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 66 ---------TPADC--VILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ---------ChHHH--HHHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 11122 233566677777899999632 222 3555677889999998655
No 153
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=91.20 E-value=1.5 Score=40.73 Aligned_cols=91 Identities=18% Similarity=0.316 Sum_probs=57.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchh-hhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNAR-RFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
|||+++...+. -..|++.|.++||+|+..+...... .+... + ...+. .. .+
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~-------g-~~~v~-~g-------------~l- 52 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHLYPIH-------Q-ALTVH-TG-------------AL- 52 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCcccccccc-------C-CceEE-EC-------------CC-
Confidence 57777653332 6789999999999999887654332 22211 0 01111 00 00
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcc------hHHHHHHhCCCeEEE
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPW------TVSIAEELGIPRLAF 143 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~------~~~~A~~lgiP~v~~ 143 (490)
-..++.+++++.++|+||--.+.++ +..+++.+|||++.+
T Consensus 53 -----------------~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 53 -----------------DPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred -----------------CHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 0134667788889998885555443 567899999999997
No 154
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.83 E-value=1.8 Score=36.73 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=37.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNAR 48 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (490)
.+|||++.-.|+.|-..-.+.|++.|.++|+.|-=+.+++.++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 4689999999999999999999999999999998766665543
No 155
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=90.32 E-value=3.6 Score=38.12 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=64.7
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
++||||+.-=-+.- ---+.+|+++|.+.| +|+++.+...++-....+.. ...+++..+... .....+
T Consensus 4 ~~M~ILltNDDGi~-a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~----~~pl~~~~~~~~-------~~~~~y 70 (257)
T PRK13932 4 KKPHILVCNDDGIE-GEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTL----GVPLRIKEYQKN-------NRFFGY 70 (257)
T ss_pred CCCEEEEECCCCCC-CHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccC----CCCeEEEEEccC-------CCceEE
Confidence 46799887733332 234788999998888 79999998776665554222 224555444210 010000
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcC----------CCc---chHHHHHHhCCCeEEEec
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDN----------LFP---WTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~----------~~~---~~~~~A~~lgiP~v~~~~ 145 (490)
. ....-..|-. -.+..++ ..+||+||+-. ++. +|+.-|..+|||.|.+|.
T Consensus 71 ~-------v~GTPaDCV~--lal~~~~-~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 71 T-------VSGTPVDCIK--VALSHIL-PEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred E-------EcCcHHHHHH--HHHHhhc-CCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 0 0112222211 1222333 24799999632 222 456667788999999865
No 156
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=90.10 E-value=3.2 Score=43.09 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=65.1
Q ss_pred CceEeeccchh---HhhhccCCceeecccC---ChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccccc
Q 044012 346 RGFIIKGWAPQ---VLILEHQAIGGFLTHC---GWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWK 419 (490)
Q Consensus 346 ~nv~~~~~~p~---~~ll~~~~~~~~ItHG---G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 419 (490)
..|.+.++... ..++.++.+ +|.=+ |.++..||+.+|+|+| .......| +...=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 46888888773 346656665 77655 7779999999999999 33344445 344445555 2
Q ss_pred ccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 420 IWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 420 ~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
+..+|.++|..+|. +...+..+...|-+.++++.
T Consensus 474 ----------d~~~l~~al~~~L~-~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 ----------DISELLKALDYYLD-NLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred ----------CHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhh
Confidence 66889999999999 44456677777777776665
No 157
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=90.08 E-value=3 Score=37.23 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=47.5
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCC--CeEEEEeCCc-ch---hhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANG--IQVTIILTTM-NA---RRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rG--h~Vt~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
||||+++..+..+ .+.+|.+++.+.+ ++|.++.+.. .. +...+. ++.+..++..
T Consensus 1 m~ki~vl~sg~gs---~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~---------gIp~~~~~~~-------- 60 (200)
T PRK05647 1 MKRIVVLASGNGS---NLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAA---------GIPTFVLDHK-------- 60 (200)
T ss_pred CceEEEEEcCCCh---hHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHc---------CCCEEEECcc--------
Confidence 5899999977643 3446677777664 7888765443 21 222222 5555554311
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCC
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNL 125 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~ 125 (490)
... .-.....++.+.+++.++|++|+-.+
T Consensus 61 ~~~----------------~~~~~~~~~~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 61 DFP----------------SREAFDAALVEALDAYQPDLVVLAGF 89 (200)
T ss_pred ccC----------------chhHhHHHHHHHHHHhCcCEEEhHHh
Confidence 000 00122346677788889999997543
No 158
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=89.74 E-value=3.3 Score=42.27 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=66.4
Q ss_pred eeccchhH---hhhccCCceeecc---cCCh-hHHHHHHHhCCc----EeeccCcccccchHHHHHHhhccceeeccccc
Q 044012 350 IKGWAPQV---LILEHQAIGGFLT---HCGW-NSILEGVSAGVP----MVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIW 418 (490)
Q Consensus 350 ~~~~~p~~---~ll~~~~~~~~It---HGG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 418 (490)
+...+++. .+++.+|+ ++. +=|. .+..||+++|+| +|+--+.+ .+..+ +-|+.++.
T Consensus 340 l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP--- 406 (456)
T TIGR02400 340 LNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNP--- 406 (456)
T ss_pred EcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECC---
Confidence 33455554 45788888 664 3354 488899999999 55543332 22223 24666654
Q ss_pred cccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 044012 419 KIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDIR 485 (490)
Q Consensus 419 ~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 485 (490)
.+.++++++|.++|+.+ . ++-+++.+++.+.+. ..+...-+++++++|.
T Consensus 407 ----------~d~~~lA~aI~~aL~~~--~-~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 ----------YDIDGMADAIARALTMP--L-EEREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred ----------CCHHHHHHHHHHHHcCC--H-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 47899999999999833 1 255556666666654 2455555677887764
No 159
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=89.28 E-value=4.3 Score=37.58 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
||||+.-=-+. |---+.+|+++|.+ +|+|+++.+...++-....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~s 44 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHS 44 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCcccccc
Confidence 57777763333 22228889999965 6899999998777654443
No 160
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.25 E-value=1.1 Score=37.27 Aligned_cols=48 Identities=19% Similarity=0.130 Sum_probs=41.5
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
+|+.||++.+.++-+|-.-..-++..|.++|++|+++......+.+.+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~ 48 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFID 48 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 577899999999999999999999999999999999998665444444
No 161
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=88.91 E-value=8.1 Score=36.66 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=60.4
Q ss_pred CceE-eeccch---hHhhhccCCceeeccc--CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccccc
Q 044012 346 RGFI-IKGWAP---QVLILEHQAIGGFLTH--CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWK 419 (490)
Q Consensus 346 ~nv~-~~~~~p---~~~ll~~~~~~~~ItH--GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 419 (490)
+++. +.+++| +..+|++|+++.|+|+ =|.||++-.++.|||+++- -+=+.|.... +.|+-+-.+.+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~--e~gv~Vlf~~d--- 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT--EQGLPVLFTGD--- 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH--hCCCeEEecCC---
Confidence 4655 445665 7889999999888886 4899999999999999986 3444444433 55666655665
Q ss_pred ccccCCCCccchhHHHHHHHHHhc
Q 044012 420 IWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 420 ~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
.++...+.++=+++..
T Consensus 278 --------~L~~~~v~e~~rql~~ 293 (322)
T PRK02797 278 --------DLDEDIVREAQRQLAS 293 (322)
T ss_pred --------cccHHHHHHHHHHHHh
Confidence 8888888888666654
No 162
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=88.91 E-value=5.6 Score=34.85 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=56.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCe--EEEEeC-CcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQ--VTIILT-TMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~--Vt~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
|||+|+.+++. ..+..+.++|.+++|+ +..+.+ ++.......... .++....+...
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~~------------ 59 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADEK------------ 59 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHGG------------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEecccc------------
Confidence 79999976555 5577788899999997 444443 333222221100 02222222100
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEecc
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~~ 146 (490)
. +.......+++.+.+++.+||++|+-.+.. -...+-+..+..++-++++
T Consensus 60 -------~-----~~~~~~~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 60 -------N-----FQPRSENDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -------G-----SSSHHHHHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -------C-----CCchHhhhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 0 000113456778888999999998876532 3444556666666666443
No 163
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=88.44 E-value=0.73 Score=37.17 Aligned_cols=39 Identities=8% Similarity=-0.090 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCC---ChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 8 LHVMFLPYIAPG---HMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 8 ~~Il~~~~~~~G---Hi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
|||+|+.-|-.+ .-....+|+.+..+|||+|.++...+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 688888876443 345688999999999999999998654
No 164
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=87.66 E-value=6.1 Score=36.54 Aligned_cols=44 Identities=7% Similarity=0.061 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
||||+.-=-+. |---+.+|+++|++ +|+|+++.+...++-....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~a 44 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHA 44 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcccccc
Confidence 57777664443 22337888999965 6899999998777665554
No 165
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=87.43 E-value=4 Score=36.55 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=35.2
Q ss_pred cceEEEEcCC--CCCChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 044012 7 KLHVMFLPYI--APGHMVPMVDMARLFAANGIQVTIILTTMNAR 48 (490)
Q Consensus 7 ~~~Il~~~~~--~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (490)
|.+|.+++++ +-|-......|+.+|+++|+.|.++=..-...
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLR 44 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLR 44 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCch
Confidence 4578888876 77999999999999999999999998755433
No 166
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=87.15 E-value=0.86 Score=37.52 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=38.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
|||++.-.|+.+=.. ...+.++|.++|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 589998888877777 999999999999999999998888877776
No 167
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=86.96 E-value=5.6 Score=36.81 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=61.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
||||+.-=-+. |---+.+|+++|.+. |+|+++.+...++-....... ...+++..+. .......
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~----~~pl~~~~~~---------~~~~~v~- 64 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTL----TRPLRVEKVD---------NGFYAVD- 64 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccC----CCCeEEEEec---------CCeEEEC-
Confidence 57777663333 233378999999988 799999998777665554222 1234444431 0101111
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcC----------CCc---chHHHHHHhCCCeEEEec
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDN----------LFP---WTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~----------~~~---~~~~~A~~lgiP~v~~~~ 145 (490)
..-..|-.+ .+..++. .+||+||+-. ++. ++..-|...|||.|.++.
T Consensus 65 --------GTPaDcV~~--gl~~l~~-~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 65 --------GTPTDCVHL--ALNGLLD-PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred --------CcHHHHHHH--HHHhhcc-CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 112222111 2222332 3899998632 222 456667788999999865
No 168
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=86.82 E-value=11 Score=35.22 Aligned_cols=44 Identities=7% Similarity=0.056 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
||||+.-=-+. |---+.+|+++|.+.| +|+++.+...++-....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~a 44 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLG 44 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCcccccc
Confidence 57776664333 3344889999998888 79999987766655543
No 169
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=86.43 E-value=11 Score=36.29 Aligned_cols=83 Identities=11% Similarity=0.112 Sum_probs=62.0
Q ss_pred CCceE-eeccch---hHhhhccCCceeeccc--CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccc
Q 044012 345 DRGFI-IKGWAP---QVLILEHQAIGGFLTH--CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIW 418 (490)
Q Consensus 345 ~~nv~-~~~~~p---~~~ll~~~~~~~~ItH--GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 418 (490)
.+++. +.+++| +..+|..|++..|+|. =|.|+++-.++.|+|+++- .+=+.+ +-+ .+.|+=+.-..+
T Consensus 244 ~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~-~~l-~~~~ipVlf~~d-- 316 (360)
T PF07429_consen 244 AENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFW-QDL-KEQGIPVLFYGD-- 316 (360)
T ss_pred ccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHH-HHH-HhCCCeEEeccc--
Confidence 35675 456877 6779999999877774 5899999999999999875 333333 344 255666555555
Q ss_pred cccccCCCCccchhHHHHHHHHHhc
Q 044012 419 KIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 419 ~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
+++...|+++=+++..
T Consensus 317 ---------~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ---------ELDEALVREAQRQLAN 332 (360)
T ss_pred ---------cCCHHHHHHHHHHHhh
Confidence 8999999999988865
No 170
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=86.04 E-value=23 Score=31.09 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=36.8
Q ss_pred cceEEEEc---CCC-CCChHH-HHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeC
Q 044012 7 KLHVMFLP---YIA-PGHMVP-MVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRF 71 (490)
Q Consensus 7 ~~~Il~~~---~~~-~GHi~p-~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 71 (490)
|.||+++. .|+ +|=+-. .-.|+..|+++||+||++|.....+..... -.+++...+|.
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~-------y~gv~l~~i~~ 63 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE-------YNGVRLVYIPA 63 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcc-------cCCeEEEEeCC
Confidence 56787776 332 455555 346788888899999999986554322221 13667777753
No 171
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=85.68 E-value=15 Score=29.43 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=35.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRF 50 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (490)
||++.+.++..|.....-++..|.++|++|.+.......+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l 42 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEI 42 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 588999999999999999999999999999887764444333
No 172
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=85.09 E-value=1.4 Score=38.96 Aligned_cols=46 Identities=11% Similarity=-0.052 Sum_probs=36.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRF 50 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (490)
.+.+||++.-.|+.|=+.-...+++.|.++||+|+++.++...+.+
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 4567898888776665554789999999999999999997765543
No 173
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=84.53 E-value=3.8 Score=38.51 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=65.6
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
+...|.+.-.|+-|--.-.-.|.+.|.++||.|-++.-......--..+ .|+.++...+.. .+.-+ .
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi-----LGDRiRM~~~~~------~~~vF--i 116 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI-----LGDRIRMQRLAV------DPGVF--I 116 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc-----cccHhhHHhhcc------CCCeE--E
Confidence 3457788889999999999999999999999999998654333222210 122333332210 00000 0
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCC
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGI 138 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgi 138 (490)
...++... ..-......+...+++..++|+||++..-. .=..+++...+
T Consensus 117 Rs~~srG~----lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt 167 (323)
T COG1703 117 RSSPSRGT----LGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADT 167 (323)
T ss_pred eecCCCcc----chhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcce
Confidence 00000011 111112345666777888999999997554 23445555444
No 174
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=84.39 E-value=11 Score=34.86 Aligned_cols=115 Identities=12% Similarity=0.169 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
||||+.-=-+. |---+.+|+++|.+.| +|+++.+...++-+...... ...+++..++.. .+...
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~----~~pl~~~~~~~~-------~~~~~--- 64 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTL----FEPLRVGQVKVK-------NGAHI--- 64 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCC----CCCeEEEEeccC-------CCccE---
Confidence 57776553231 2233788999999988 89999998877766654222 224555554310 01000
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcC----------CCc---chHHHHHHhCCCeEEEec
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDN----------LFP---WTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~----------~~~---~~~~~A~~lgiP~v~~~~ 145 (490)
-.....-..|-.+ .+..++ ..+||+||+-. ++. +|..-|..+|||.|.++.
T Consensus 65 ----~~v~GTPaDcv~~--gl~~l~-~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 65 ----YAVDGTPTDCVIL--GINELM-PEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred ----EEEcCcHHHHHHH--HHHHhc-cCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 0011122222211 122223 24699998532 222 456677788999999864
No 175
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.14 E-value=12 Score=36.20 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=33.0
Q ss_pred cceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 7 KLHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 7 ~~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
++||+|++ -||-|-..-..++|-.|++.|..|.+++++...
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 46787777 457799999999999999999888888765443
No 176
>PRK06849 hypothetical protein; Provisional
Probab=84.13 E-value=5.7 Score=39.68 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=28.9
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+++++|++... ...-.+.+|+.|.++||+|+++....
T Consensus 2 ~~~~~VLI~G~----~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGA----RAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCC----CcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35788888852 22358999999999999999998754
No 177
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=84.10 E-value=2.9 Score=38.63 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=55.7
Q ss_pred CCeEEEEEeCCccc---CCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeecc--c
Q 044012 280 PNSVLYICFGSLTR---FSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGW--A 354 (490)
Q Consensus 280 ~~~~v~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~--~ 354 (490)
+++.|.+..|+... .+.+.+..+++.+.+.++++++..+.. +.+.+.. +.+.+... ...+.+.+- +
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~---~~~~~~~----~~~~~~~~--~~~~~~~~~~~l 174 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE---EQEKEIA----DQIAAGLQ--NPVINLAGKTSL 174 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH---HHHHHHH----HHHHTTHT--TTTEEETTTS-H
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch---HHHHHHH----HHHHHhcc--cceEeecCCCCH
Confidence 56678888887653 678889999999988776765554433 1000000 00111110 113444333 3
Q ss_pred h-hHhhhccCCceeecccCChhHHHHHHHhCCcEeec
Q 044012 355 P-QVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTW 390 (490)
Q Consensus 355 p-~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~ 390 (490)
. ...+++++++ +|+ ...|.++=|.+.|+|+|++
T Consensus 175 ~e~~ali~~a~~--~I~-~Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 175 RELAALISRADL--VIG-NDTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHTSSE--EEE-ESSHHHHHHHHTT--EEEE
T ss_pred HHHHHHHhcCCE--EEe-cCChHHHHHHHHhCCEEEE
Confidence 3 3668999998 998 4789999999999999998
No 178
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=83.52 E-value=3.4 Score=39.64 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=33.3
Q ss_pred ceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhh
Q 044012 8 LHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILTTMNARR 49 (490)
Q Consensus 8 ~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~ 49 (490)
||++|+. -||-|-..-..++|-.++++|++|.++++....+.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccH
Confidence 4666666 56889999999999999999999999998766543
No 179
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=83.45 E-value=8.7 Score=35.56 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=59.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
+++|+++...+.| ..||+.|.++|+.|++.+...+.. .... +.....- .+
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~---------~~~v~~G--------------~l- 51 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADL---------PGPVRVG--------------GF- 51 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccC---------CceEEEC--------------CC-
Confidence 5788888766665 578999999999988877654333 1110 1111100 00
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcc------hHHHHHHhCCCeEEEec
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPW------TVSIAEELGIPRLAFTG 145 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~------~~~~A~~lgiP~v~~~~ 145 (490)
.-.+.+.+++++.++++||==.+-++ +..+|+.+|||++.+--
T Consensus 52 ----------------~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 52 ----------------GGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred ----------------CCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 01357778888899999883333332 57789999999999743
No 180
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=82.92 E-value=40 Score=31.25 Aligned_cols=96 Identities=21% Similarity=0.311 Sum_probs=55.7
Q ss_pred eEEEEEeCCccc--CCHHHHHH----HHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccC--CCceEe---
Q 044012 282 SVLYICFGSLTR--FSKEQTSE----IAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRN--DRGFII--- 350 (490)
Q Consensus 282 ~~v~vs~GS~~~--~~~~~~~~----~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~nv~~--- 350 (490)
.|.++--|+-.. ..++.... +.+.+++-|..|+...+.. -|+.....+... ..-..+
T Consensus 163 ~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRR------------Tp~~~~s~l~~~l~s~~~i~w~~ 230 (329)
T COG3660 163 RVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRR------------TPDTVKSILKNNLNSSPGIVWNN 230 (329)
T ss_pred eEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecC------------CcHHHHHHHHhccccCceeEeCC
Confidence 344444555544 33444333 3455666788999998876 232222221100 111111
Q ss_pred --eccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeec
Q 044012 351 --KGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTW 390 (490)
Q Consensus 351 --~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~ 390 (490)
.++=|+.+.|+.++. .++|--..|-.+||...|+|+.++
T Consensus 231 ~d~g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 231 EDTGYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCCCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 244589999998887 244555567788999999999665
No 181
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=82.02 E-value=6.7 Score=36.87 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=34.9
Q ss_pred ceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccC
Q 044012 347 GFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPV 392 (490)
Q Consensus 347 nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~ 392 (490)
.+.+.+-++-.+++.+++. +||-. .++-.||+.+|+|++++.-
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--Vvtin-StvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTIN-STVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEEC-CHHHHHHHHcCCceEEecC
Confidence 4555666788899999998 88864 4578999999999999864
No 182
>PRK06988 putative formyltransferase; Provisional
Probab=81.82 E-value=11 Score=36.23 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=25.0
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
||||+|+..+. ..+...++|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 48999996554 3456678888899998887764
No 183
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=81.68 E-value=4.7 Score=41.31 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=59.0
Q ss_pred eeccchhH---hhhccCCceeecc---cCChh-HHHHHHHhCCc---EeeccCcccccchHHHHHHhhccceeecccccc
Q 044012 350 IKGWAPQV---LILEHQAIGGFLT---HCGWN-SILEGVSAGVP---MVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWK 419 (490)
Q Consensus 350 ~~~~~p~~---~ll~~~~~~~~It---HGG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~ 419 (490)
+.+++++. .+++.+++ ||. +-|.| ++.||+++|+| +|++--.. ..+ +...-|+.++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~---G~~----~~~~~g~lv~p---- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFA---GAA----EELSGALLVNP---- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccc---cch----hhcCCCEEECC----
Confidence 44566654 46888888 663 34544 77999999999 44443211 111 11122555543
Q ss_pred ccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 044012 420 IWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDI 484 (490)
Q Consensus 420 ~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 484 (490)
-+.++++++|.++|+++.+ ..+++.++..+.+. ..+...-++.++.+|
T Consensus 412 ---------~d~~~la~ai~~~l~~~~~---e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ---------YDIDEVADAIHRALTMPLE---ERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ---------CCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 4789999999999984411 22222233333322 344455566666655
No 184
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=81.63 E-value=4.7 Score=44.30 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=61.8
Q ss_pred HhhhccCCceeeccc---CChh-HHHHHHHhCCc---EeeccCcccccchHHHHHHhhc-cceeeccccccccccCCCCc
Q 044012 357 VLILEHQAIGGFLTH---CGWN-SILEGVSAGVP---MVTWPVFAEQFNNEKLVTQVLK-FGLPVGNEIWKIWATQDSPV 428 (490)
Q Consensus 357 ~~ll~~~~~~~~ItH---GG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~rv~e~~G-~G~~l~~~~~~~~~~~~~~~ 428 (490)
..+++.+++ |+.- -|.| +..|++++|+| ++++.-+ -..+. .+| -|+.++.
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~----~l~~~allVnP------------- 427 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQ----SLGAGALLVNP------------- 427 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchh----hhcCCeEEECC-------------
Confidence 457888888 6643 4766 77799999999 5555422 12222 233 3566654
Q ss_pred cchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q 044012 429 INRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDIRLY 487 (490)
Q Consensus 429 ~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 487 (490)
.+.++++++|.++|+.+. ++-+++.+++.+... ..+...-.+.+++++.+.
T Consensus 428 ~D~~~lA~AI~~aL~m~~---~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 428 WNITEVSSAIKEALNMSD---EERETRHRHNFQYVK-----THSAQKWADDFMSELNDI 478 (797)
T ss_pred CCHHHHHHHHHHHHhCCH---HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHH
Confidence 488999999999998321 234445555555544 233344456777766554
No 185
>PRK05973 replicative DNA helicase; Provisional
Probab=81.03 E-value=9.1 Score=35.15 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=38.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
.-=+++...|+.|-..-.+.++...+++|+.|.|++.+...+.+...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 34467777889999999999999998999999999988876555543
No 186
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=80.42 E-value=18 Score=35.82 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=70.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
..=|++---|+.|--.=+++++..|+++| .|.+++.++....+.--.+ .+..+ . ++
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~------------RL~~~-------~--~~-- 148 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRAD------------RLGLP-------T--NN-- 148 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHH------------HhCCC-------c--cc--
Confidence 34567777889999999999999999999 9999999887766554311 11100 0 00
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-ch--------------------HHHHHHhCCCeEEEec
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-WT--------------------VSIAEELGIPRLAFTG 145 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~--------------------~~~A~~lgiP~v~~~~ 145 (490)
++...+.-.+.+.+.+++.+||++|+|.... +. ..+|+..+|+.+++.+
T Consensus 149 ----------l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 149 ----------LYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred ----------eEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 0001112245677777788999999998543 21 3467788888877755
Q ss_pred c
Q 044012 146 S 146 (490)
Q Consensus 146 ~ 146 (490)
.
T Consensus 219 V 219 (456)
T COG1066 219 V 219 (456)
T ss_pred E
Confidence 4
No 187
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=80.22 E-value=5.6 Score=41.31 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=47.9
Q ss_pred hHhhhccCCceeecc---cCCh-hHHHHHHHhCCcEeeccCcccccchHHHHHHhh-ccceeeccccccccccCCCCccc
Q 044012 356 QVLILEHQAIGGFLT---HCGW-NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVL-KFGLPVGNEIWKIWATQDSPVIN 430 (490)
Q Consensus 356 ~~~ll~~~~~~~~It---HGG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~-G~G~~l~~~~~~~~~~~~~~~~t 430 (490)
+.++++.|++ +|. +=|+ -++.||+++|+|+|.....+=- .++..++..- ..|+.+...+... -.-+
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~~~~~gi~V~~r~~~~------~~e~ 538 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIEDPESYGIYIVDRRFKS------PDES 538 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhccCCCceEEEecCCccc------hHHH
Confidence 6778888898 655 3454 4999999999999998764311 1112221111 1466664321000 1346
Q ss_pred hhHHHHHHHHHhc
Q 044012 431 RGNIKNAICVVMD 443 (490)
Q Consensus 431 ~~~l~~~i~~~l~ 443 (490)
.++|.++|.++++
T Consensus 539 v~~La~~m~~~~~ 551 (590)
T cd03793 539 VQQLTQYMYEFCQ 551 (590)
T ss_pred HHHHHHHHHHHhC
Confidence 6788888888886
No 188
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=79.66 E-value=4.4 Score=40.99 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=53.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
++||||++-.+++-| +|++.|++-++-..+++.+.+....... . .... . .
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~g~~~~~---------~--~~~~---------~-----~ 52 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNGGFPDDE---------L--LPAD---------S-----F 52 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCchHHhccc---------c--cccc---------C-----c
Confidence 468999999888776 7899999988654444443322111100 0 0000 0 0
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcc---hHHHHHHhCCCeE
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPW---TVSIAEELGIPRL 141 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~---~~~~A~~lgiP~v 141 (490)
+. .-.+.+.+++++.++|+||...-... ...+++.+|+|++
T Consensus 53 ~~---------------~d~~~l~~~a~~~~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 53 SI---------------LDKSSVQSFLKSNPFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred Cc---------------CCHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 00 01245566677889999998764443 3345667999964
No 189
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=79.57 E-value=11 Score=36.31 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|||+|+..+.. .+...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcC
Confidence 68999976543 367778899999999877653
No 190
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=79.24 E-value=17 Score=33.83 Aligned_cols=113 Identities=10% Similarity=0.102 Sum_probs=60.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC---CCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN---GIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r---Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
||||+.-=-+. |---+.+|+++|.+. |++|+++.+...++-....+.. ...+++..+. .....
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~----~~pl~~~~~~---------~~~ya 66 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISY----THPMMIAELG---------PRRFA 66 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccC----CCCeEEEEeC---------CCeEE
Confidence 46665542222 222366778888763 4799999998776665554322 1234444432 11111
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEE----------cCCCc---chHHHHHHhCCCeEEEec
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVS----------DNLFP---WTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~----------D~~~~---~~~~~A~~lgiP~v~~~~ 145 (490)
..+ .-..|-. -.+..++...+||+||+ |.++. ++..-|..+|||.|.+|.
T Consensus 67 v~G---------TPaDCV~--lal~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 67 AEG---------SPADCVL--AALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred EcC---------chHHHHH--HHHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 111 1122211 12233343357999996 33333 356667788999999865
No 191
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=79.11 E-value=23 Score=32.19 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=30.1
Q ss_pred cceEEEEcCC--CCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYI--APGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~--~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
||+.+|++.. +-|-..-..+|+++|+++|++|..+=+
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KP 39 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKP 39 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECc
Confidence 4566666644 569999999999999999999998765
No 192
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=79.09 E-value=4.9 Score=39.77 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=66.7
Q ss_pred CCceEeec-cchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccccccccc
Q 044012 345 DRGFIIKG-WAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWAT 423 (490)
Q Consensus 345 ~~nv~~~~-~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~ 423 (490)
..++...+ ..+..++|..+++ +||-- ...+.|.++.++|++....-.|++.. ..|.-......
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~------~rg~~~~~~~~------- 314 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK------ERGFYFDYEED------- 314 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT------TSSBSS-TTTS-------
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh------ccCCCCchHhh-------
Confidence 45666544 4567899999999 99976 45788999999999988765555522 23333222111
Q ss_pred CCCC-ccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 044012 424 QDSP-VINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALI 481 (490)
Q Consensus 424 ~~~~-~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 481 (490)
.+++ .-+.++|.++|.++++|+ ..++++.+++.+++.+ -.+|.+...+.+.|
T Consensus 315 ~pg~~~~~~~eL~~~i~~~~~~~----~~~~~~~~~~~~~~~~--~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 315 LPGPIVYNFEELIEAIENIIENP----DEYKEKREKFRDKFFK--YNDGNSSERIVNYI 367 (369)
T ss_dssp SSS-EESSHHHHHHHHTTHHHHH----HHTHHHHHHHHHHHST--T--S-HHHHHHHHH
T ss_pred CCCceeCCHHHHHHHHHhhhhCC----HHHHHHHHHHHHHhCC--CCCchHHHHHHHHH
Confidence 0111 457799999999998843 4567777777777753 23455444444443
No 193
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=79.02 E-value=17 Score=32.40 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=38.6
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
++.||++.+.++-.|-....-++..|.+.|++|+++......+.+.+
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~ 127 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVE 127 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 35799999999999999999999999999999998876544433333
No 194
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=78.58 E-value=1.1 Score=39.43 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=28.6
Q ss_pred CcceEEEEcCCCCCChHHH------------HHHHHHHHHCCCeEEEEeCCc
Q 044012 6 QKLHVMFLPYIAPGHMVPM------------VDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~------------l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+.+||++...|++=.+.|. ..||+++..||++|+++..+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4567888777777666653 589999999999999999863
No 195
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=77.77 E-value=7.9 Score=33.20 Aligned_cols=110 Identities=17% Similarity=0.270 Sum_probs=61.5
Q ss_pred eEEEEcCCCCCChHH----HHHHHHHHHHC-CCeEEEEeCCc---chhhhhhhhcccccCCCce-EEEEeeCCCCcCCCC
Q 044012 9 HVMFLPYIAPGHMVP----MVDMARLFAAN-GIQVTIILTTM---NARRFQNAIDRDSRLGREI-SLRILRFPSQEAGLP 79 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p----~l~LA~~L~~r-Gh~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 79 (490)
+|+++.--..|.+++ ++..|++|++. |.+|+.++-.. ..+.+.+.+.. .++ +.+.+..+
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~-----~G~d~v~~~~~~------- 68 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK-----YGADKVYHIDDP------- 68 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS-----TTESEEEEEE-G-------
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh-----cCCcEEEEecCc-------
Confidence 355555545677766 67889999875 88988887653 22222221110 133 23444311
Q ss_pred CCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc---chHHHHHHhCCCeEEEec
Q 044012 80 EGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP---WTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~---~~~~~A~~lgiP~v~~~~ 145 (490)
....+ ..+.+...+.+++++.+||+|+.-.-.. .+..+|..+|.|++.-.+
T Consensus 69 -~~~~~--------------~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 69 -ALAEY--------------DPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp -GGTTC---------------HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred -ccccc--------------CHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 00000 1113345666677778999999876444 478899999999987543
No 196
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=77.76 E-value=2.8 Score=36.78 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=37.2
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
|+||++.-.|+.|=+. ...+.+.|+++|++|.++.++...+.+..
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 4688888877776665 79999999999999999999887776654
No 197
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=77.20 E-value=2.9 Score=36.25 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|||+++. +.|++- -.|+++...|||+||.++-.
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 6787765 334432 36899999999999999853
No 198
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=76.10 E-value=35 Score=33.75 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=34.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (490)
=+++..-|+.|--.-++.+|..++++|..|.+++.++..+.+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 3456667799999999999999999999999998876555443
No 199
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=75.89 E-value=23 Score=35.86 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=56.6
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
+.+|+++...+ .....+++.|.+.|-+|..+......+..... + .... .
T Consensus 310 ~Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~----------------~--------~~~~--~ 358 (432)
T TIGR01285 310 GGKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKL----------------P--------VETV--V 358 (432)
T ss_pred CCCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhC----------------C--------cCcE--E
Confidence 45677776533 36688888888899998887765443321110 0 0000 0
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
. .+ ..++.+++++.++|+||.... ...+|+.+|||++.+
T Consensus 359 ~----~D------------~~~l~~~i~~~~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 359 I----GD------------LEDLEDLACAAGADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred e----CC------------HHHHHHHHhhcCCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 0 01 135677788889999998853 577999999999876
No 200
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=75.86 E-value=26 Score=35.64 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEe
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFT 144 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~ 144 (490)
.++.+.+++.+||++|.... ...+|+.+|||++.+.
T Consensus 367 ~e~~~~i~~~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 367 WHLRSLLFTEPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhhcCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 46677788889999998853 5789999999998763
No 201
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=74.93 E-value=44 Score=29.50 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=52.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCC--eEEEEeCCc-ch---hhhhhhhcccccCCCceEEEEeeCCCCcCCCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGI--QVTIILTTM-NA---RRFQNAIDRDSRLGREISLRILRFPSQEAGLPEG 81 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh--~Vt~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (490)
|||+++..+..+- +.+|.+.+.+.++ +|.++.+.. .. +..++. ++.+..++. ..
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~---------gip~~~~~~--------~~ 60 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQA---------GIPTFVLSL--------KD 60 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHc---------CCCEEEECc--------cc
Confidence 5788888655443 4567777777655 677654432 22 222222 555554431 11
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEE
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAF 143 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~ 143 (490)
..+ .....+++.+.+++.++|++|+-.+.. -...+-......++-+
T Consensus 61 ~~~----------------~~~~~~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~iNi 107 (190)
T TIGR00639 61 FPS----------------REAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNI 107 (190)
T ss_pred cCc----------------hhhhhHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhccCCEEEE
Confidence 000 112235677888889999999765432 3333333333334443
No 202
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=74.88 E-value=18 Score=33.53 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=58.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
|||+++...+.| ..||+.|.++|+ |++-+..++...+.... ....... . ..
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~------~~~~~v~-~----------------G~ 51 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE------LPGLEVR-V----------------GR 51 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc------cCCceEE-E----------------CC
Confidence 688888766655 479999999999 66555444433333210 0011111 0 00
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcc------hHHHHHHhCCCeEEEec
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPW------TVSIAEELGIPRLAFTG 145 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~------~~~~A~~lgiP~v~~~~ 145 (490)
+ .-.+.+.+++++.++|+||==.+-++ +..+|+.+|||++.+--
T Consensus 52 l--------------g~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 52 L--------------GDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred C--------------CCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 0 01357778888889999993333332 57789999999999743
No 203
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=74.13 E-value=37 Score=30.15 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=40.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
..||++.+.++-.|-....-++..|.++|++|+++......+.+.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 46999999999999999999999999999999999986665555444
No 204
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=74.12 E-value=23 Score=32.53 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=57.8
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
+++|+++...+. ...|++.|...++.+++.+........... .+ . ..+ .
T Consensus 2 ~~~ilvlGGT~D-----ar~la~~L~~~~~~~~~ss~t~~g~~l~~~------~~-~---~~~----------------~ 50 (257)
T COG2099 2 MMRILLLGGTSD-----ARALAKKLAAAPVDIILSSLTGYGAKLAEQ------IG-P---VRV----------------G 50 (257)
T ss_pred CceEEEEeccHH-----HHHHHHHhhccCccEEEEEcccccccchhc------cC-C---eee----------------c
Confidence 467777653332 478999999999777777754332222211 00 0 000 0
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcc------hHHHHHHhCCCeEEE
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPW------TVSIAEELGIPRLAF 143 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~------~~~~A~~lgiP~v~~ 143 (490)
+. .-.+.+.++|++.+.|+||=-.+-++ +..+|+..|||++.+
T Consensus 51 G~--------------l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 51 GF--------------LGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred Cc--------------CCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 00 12367888899999999994444443 567899999999997
No 205
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=73.33 E-value=26 Score=35.47 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.++.+.+++.+||+||.+.. ...+|+.+|+|++.+
T Consensus 361 ~el~~~i~~~~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHhhccCCCEEEECch---hHHHHHhcCCCEEEe
Confidence 46777888889999999964 467889999999876
No 206
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=73.10 E-value=4.8 Score=35.35 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=38.0
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHH-CCCeEEEEeCCcchhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAA-NGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~~~ 53 (490)
|+||++.-.|+.| .+=...|+++|.+ .||+|.++.++...+.+...
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~ 47 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAHE 47 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHH
Confidence 5689888888777 6668999999999 59999999998887776653
No 207
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=72.85 E-value=45 Score=33.81 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.++.+++++.+||++|.+.. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 47778888889999999864 568999999999876
No 208
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=72.29 E-value=86 Score=29.38 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=51.7
Q ss_pred CceEeeccch---hHhhhccCCceeeccc---CChh-HHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccc
Q 044012 346 RGFIIKGWAP---QVLILEHQAIGGFLTH---CGWN-SILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIW 418 (490)
Q Consensus 346 ~nv~~~~~~p---~~~ll~~~~~~~~ItH---GG~~-s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 418 (490)
.++...++++ ...++..+++ ++.- .|.| ++.||+++|+|++... .......+ ...+.|. +...
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~-~~~~~g~-~~~~-- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVV-EDGETGL-LVPP-- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHh-cCCCceE-ecCC--
Confidence 5788888888 3446777777 5555 3544 4699999999996654 33334444 2332465 4332
Q ss_pred cccccCCCCccchhHHHHHHHHHhc
Q 044012 419 KIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 419 ~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
...+++..++..+++
T Consensus 327 ----------~~~~~~~~~i~~~~~ 341 (381)
T COG0438 327 ----------GDVEELADALEQLLE 341 (381)
T ss_pred ----------CCHHHHHHHHHHHhc
Confidence 267899999999998
No 209
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=72.23 E-value=5.4 Score=30.69 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCChhhHhhHHHHHHh
Q 044012 24 MVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTSTPETTKKLFPALEL 103 (490)
Q Consensus 24 ~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (490)
++.+|+.|.+.|+++ +.++...+.+.+. ++....+... ....+... .
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~------~~~~~~~~-----g----------- 48 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNK------IGEGESPD-----G----------- 48 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEE------HSTG-GGT-----H-----------
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeee------cccCccCC-----c-----------
Confidence 578999999999664 5555666677766 5653333100 00000000 0
Q ss_pred hHHHHHHHhhcCCCcEEEEcCCCcch---------HHHHHHhCCCeE
Q 044012 104 LRPEIEKLFREQNPNCIVSDNLFPWT---------VSIAEELGIPRL 141 (490)
Q Consensus 104 ~~~~l~~~l~~~~pD~VI~D~~~~~~---------~~~A~~lgiP~v 141 (490)
...+.+++++.+.|+||........ ..+|..++||++
T Consensus 49 -~~~i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 49 -RVQIMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp -CHHHHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred -hhHHHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 0167888899999999987644321 446778888875
No 210
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=71.55 E-value=52 Score=30.70 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=33.8
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
..=+++...|+.|-..-.++++...+++|..|.|++.+...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 34456667789999999999999988899999999987543
No 211
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=71.00 E-value=4.5 Score=37.03 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCCChHHH------------HHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPM------------VDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~------------l~LA~~L~~rGh~Vt~~~~ 43 (490)
|||++...|+.=.+.|. .+||++|.++||+|+++..
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEEC
Confidence 57777777776666553 4889999999999999874
No 212
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=70.81 E-value=7.9 Score=28.62 Aligned_cols=36 Identities=17% Similarity=0.058 Sum_probs=31.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
..-++++..+...|...+..+|+.|+++|+.|...=
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 367888888999999999999999999999987554
No 213
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=70.70 E-value=43 Score=25.27 Aligned_cols=79 Identities=18% Similarity=0.256 Sum_probs=47.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCChhhHhhHHHHHHh
Q 044012 24 MVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTSTPETTKKLFPALEL 103 (490)
Q Consensus 24 ~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (490)
++.+++.|.+.|++| ++|. ...+.++.. ++....+-.+ ...+
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~~---------Gi~~~~~~~k-----i~~~---------------------- 43 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLREA---------GLPVKTLHPK-----VHGG---------------------- 43 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHHC---------CCcceeccCC-----CCCC----------------------
Confidence 468999999999998 3554 445555554 4443211100 0000
Q ss_pred hHHHHHHHhhcCCCcEEEEcCCC---------cchHHHHHHhCCCeE
Q 044012 104 LRPEIEKLFREQNPNCIVSDNLF---------PWTVSIAEELGIPRL 141 (490)
Q Consensus 104 ~~~~l~~~l~~~~pD~VI~D~~~---------~~~~~~A~~lgiP~v 141 (490)
...+.+.+++.++|+||..... +.-..+|...+||++
T Consensus 44 -~~~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 44 -ILAILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred -CHHHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 0136778888999999985421 123456888888875
No 214
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=70.59 E-value=43 Score=34.18 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=30.6
Q ss_pred CcceEEEEcCC-CCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYI-APGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~-~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+|.+|++.... +.|-..-...|++.|+++|++|..+-+
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 34567666544 568999999999999999999998876
No 215
>PRK05920 aromatic acid decarboxylase; Validated
Probab=70.39 E-value=6.4 Score=35.19 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=36.8
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
++||++.-.|+.+= +=...+.+.|.+.||+|+++.++...+.+..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 57888887666555 6788999999999999999999887776654
No 216
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=69.84 E-value=15 Score=29.37 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (490)
.|+++...+..-|-.-+.-|+..|.++||+|.++-.....+.+.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~ 44 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELV 44 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHH
Confidence 47899999999999999999999999999999986544333333
No 217
>PRK09620 hypothetical protein; Provisional
Probab=69.68 E-value=6.2 Score=36.10 Aligned_cols=39 Identities=10% Similarity=-0.006 Sum_probs=30.3
Q ss_pred CcceEEEEcCCCCCChHHH------------HHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAPGHMVPM------------VDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~------------l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+.+||++...|+.=.+.|. ..||++|.++|++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4578888877766655443 48999999999999999753
No 218
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=69.59 E-value=33 Score=34.55 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=26.0
Q ss_pred HHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEe
Q 044012 109 EKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFT 144 (490)
Q Consensus 109 ~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~ 144 (490)
...+++.+||++|.. ..+..+|+++|||.+.+.
T Consensus 343 ~~~~~~~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 343 IAAVEEYRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHHhhcCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 345567799999987 346779999999998863
No 219
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=69.54 E-value=44 Score=26.29 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCChhhHhhHH
Q 044012 19 GHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTSTPETTKKLF 98 (490)
Q Consensus 19 GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (490)
++-.-++.+++.|.+.|+++. + ++...+.+.+. ++....+..+ ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~-a-T~gT~~~l~~~---------gi~~~~v~~~------~~------------------ 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV-A-TEGTAKYLQEA---------GIPVEVVNKV------SE------------------ 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE-E-chHHHHHHHHc---------CCeEEEEeec------CC------------------
Confidence 355668899999999999983 4 44555566655 4554444311 00
Q ss_pred HHHHhhHHHHHHHhhcCCCcEEEEcCC-------CcchHHHHHHhCCCeEE
Q 044012 99 PALELLRPEIEKLFREQNPNCIVSDNL-------FPWTVSIAEELGIPRLA 142 (490)
Q Consensus 99 ~~~~~~~~~l~~~l~~~~pD~VI~D~~-------~~~~~~~A~~lgiP~v~ 142 (490)
-...+.+.+++.++|+||.-.- .+.-...|-.+|||++.
T Consensus 55 -----~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -----GRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -----CchhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 1146777788889999998432 13456678899999874
No 220
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=69.31 E-value=14 Score=32.49 Aligned_cols=93 Identities=11% Similarity=0.217 Sum_probs=47.4
Q ss_pred CCCCChHHHHHHHHHHHHC--CCeEEEEeCCcc-hhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCChh
Q 044012 16 IAPGHMVPMVDMARLFAAN--GIQVTIILTTMN-ARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTSTPE 92 (490)
Q Consensus 16 ~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 92 (490)
.+.|-+.-...|+++|.++ |+.|.+-++... .+.+.+... ..+....+|+.
T Consensus 29 ~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D-------------------- 82 (186)
T PF04413_consen 29 ASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLD-------------------- 82 (186)
T ss_dssp SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---S--------------------
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCcc--------------------
Confidence 5679999999999999987 899888887443 334443311 12222223311
Q ss_pred hHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcch--HHHHHHhCCCeEEEec
Q 044012 93 TTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWT--VSIAEELGIPRLAFTG 145 (490)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~--~~~A~~lgiP~v~~~~ 145 (490)
. ...+...++.++||++|.--...|. +..|+..|||.+.+.-
T Consensus 83 ~-----------~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 F-----------PWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp S-----------HHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred C-----------HHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 0 1244555667799998866555554 4467777999988743
No 221
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=68.83 E-value=15 Score=33.30 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCC--ChHHHHHHHHHHHH
Q 044012 7 KLHVMFLPYIAPG--HMVPMVDMARLFAA 33 (490)
Q Consensus 7 ~~~Il~~~~~~~G--Hi~p~l~LA~~L~~ 33 (490)
||||++..|+-+| -+||...++++|..
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccc
Confidence 5789888877444 48999999999863
No 222
>PRK11823 DNA repair protein RadA; Provisional
Probab=68.50 E-value=55 Score=33.34 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (490)
-=+++..-|+.|-..-++.++..++++|..|.+++.++..+.+.
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 34566667799999999999999998999999999877665443
No 223
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=67.92 E-value=58 Score=25.78 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCChhhHhhHHH
Q 044012 20 HMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTSTPETTKKLFP 99 (490)
Q Consensus 20 Hi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (490)
+=.-++.+|+.|.+.|+++. .++...+.+.+. ++....+... +++
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~--AT~gTa~~L~~~---------Gi~~~~v~~~------~~~------------------ 54 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF--ATGGTSRVLADA---------GIPVRAVSKR------HED------------------ 54 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE--ECcHHHHHHHHc---------CCceEEEEec------CCC------------------
Confidence 33457899999999999983 444555566655 5555554311 110
Q ss_pred HHHhhHHHHHHHhhc-CCCcEEEEcC--CC--------cchHHHHHHhCCCeEE
Q 044012 100 ALELLRPEIEKLFRE-QNPNCIVSDN--LF--------PWTVSIAEELGIPRLA 142 (490)
Q Consensus 100 ~~~~~~~~l~~~l~~-~~pD~VI~D~--~~--------~~~~~~A~~lgiP~v~ 142 (490)
-.+.+.+.+++ .++|+||.-. .. +.-..+|-..+||++.
T Consensus 55 ----g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 55 ----GEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred ----CCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 11456777888 8999999732 22 1234568888999876
No 224
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=67.35 E-value=41 Score=34.01 Aligned_cols=91 Identities=21% Similarity=0.205 Sum_probs=54.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc----chhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCcc
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM----NARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCE 83 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (490)
.|+.+...+.. ...+++.|.+-|-+|..+++.. +.+....... .+ ....
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~~~------------~~---------~~~v- 338 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRWLE------------ML---------GVEV- 338 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHHHH------------hc---------CCCc-
Confidence 37777776655 7888999999999999987653 1222222100 00 0000
Q ss_pred CCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEe
Q 044012 84 NLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFT 144 (490)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~ 144 (490)
. .... ..+..+.+++.+||++|... -...+|+.+|||.+.+.
T Consensus 339 --~------~~~d--------l~~~~~~l~~~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 339 --K------YRAS--------LEDDMEAVLEFEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred --e------eccC--------HHHHHHHHhhCCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 0 0000 11112456778999999883 35568999999999863
No 225
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=67.10 E-value=9.6 Score=35.50 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=42.1
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
+...++|...+|.|-..=..+||.+|.++|+.|+|++.+++...+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 456789999899999999999999999889999999998887777765
No 226
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=65.94 E-value=61 Score=31.15 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|||+|+..+. ..+...+.|.++||+|..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEEC
Confidence 6899985443 456778888888999887765
No 227
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=65.66 E-value=63 Score=30.69 Aligned_cols=102 Identities=7% Similarity=0.088 Sum_probs=57.2
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeC--CcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILT--TMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
.++|||+|+..+..+ .+.+|.++..+. +++|.++.+ ++.....++. ++.+..++.. +
T Consensus 87 ~~~~ri~vl~Sg~g~---nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~~~------~- 147 (286)
T PRK13011 87 AARPKVLIMVSKFDH---CLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWH---------GIPFHHFPIT------P- 147 (286)
T ss_pred ccCceEEEEEcCCcc---cHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHh---------CCCEEEeCCC------c-
Confidence 467899999988533 345555555443 689888755 2334444443 5666665411 0
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEE
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAF 143 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~ 143 (490)
.+ .......+.+.|++.++|+||.-.+.. -...+-+.+.-..+-+
T Consensus 148 --~~----------------~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNi 193 (286)
T PRK13011 148 --DT----------------KPQQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINI 193 (286)
T ss_pred --Cc----------------hhhhHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEe
Confidence 00 001233567778888999999775433 3344444444444443
No 228
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=65.61 E-value=17 Score=31.40 Aligned_cols=25 Identities=36% Similarity=0.683 Sum_probs=20.4
Q ss_pred hhHHHHHHHhhcCCCcEEEEcCCCc
Q 044012 103 LLRPEIEKLFREQNPNCIVSDNLFP 127 (490)
Q Consensus 103 ~~~~~l~~~l~~~~pD~VI~D~~~~ 127 (490)
.....+.++|++.+||+||+...+.
T Consensus 76 ~~~~~l~~~l~~~~PD~IIsThp~~ 100 (169)
T PF06925_consen 76 LFARRLIRLLREFQPDLIISTHPFP 100 (169)
T ss_pred HHHHHHHHHHhhcCCCEEEECCcch
Confidence 3456788999999999999997654
No 229
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=65.44 E-value=45 Score=28.40 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=24.1
Q ss_pred CCCCCChHHHHHHHHHHHHCCCeEEEE
Q 044012 15 YIAPGHMVPMVDMARLFAANGIQVTII 41 (490)
Q Consensus 15 ~~~~GHi~p~l~LA~~L~~rGh~Vt~~ 41 (490)
.++.|-..-.+.|++.|+++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 457788999999999999999999886
No 230
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=65.39 E-value=72 Score=32.93 Aligned_cols=47 Identities=6% Similarity=0.013 Sum_probs=39.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
.--+++...|+.|-..-.+.++.+.+++|..|.+++.++..+.+...
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 44567777789999999999999999999999999998887666554
No 231
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=65.19 E-value=8.9 Score=33.72 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=34.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNAR 48 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (490)
+||++.-.|+.|-+.-...+.++|.+.|++|+++.++...+
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 37888888888877777899999999999999999876543
No 232
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=64.93 E-value=7.9 Score=39.44 Aligned_cols=41 Identities=22% Similarity=0.179 Sum_probs=35.6
Q ss_pred CCcceEEEEcCCCCCChHHHH------------HHHHHHHHCCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMV------------DMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l------------~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.+.+||++...|++=.+.|.. +||+++..||++||+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 467899999999988888854 89999999999999999753
No 233
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=64.82 E-value=47 Score=26.47 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=56.1
Q ss_pred EEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCCh
Q 044012 12 FLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTSTP 91 (490)
Q Consensus 12 ~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 91 (490)
|++.... +-.-+..+|+.|.+.|++|. +++...+.+.+. ++....+... .+. ...
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~~------~~~-~~~------ 58 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAWP------SEE-PQN------ 58 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeeec------cCC-CCC------
Confidence 3443333 44568899999999999983 444555555554 4433333200 000 000
Q ss_pred hhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCC---------CcchHHHHHHhCCCeE
Q 044012 92 ETTKKLFPALELLRPEIEKLFREQNPNCIVSDNL---------FPWTVSIAEELGIPRL 141 (490)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~---------~~~~~~~A~~lgiP~v 141 (490)
. .+.+.+++++.++|+||.-+- .+.-...|-.+|||++
T Consensus 59 ~------------~~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 59 D------------KPSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred C------------chhHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 0 146777888889999998432 2345667889999986
No 234
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=64.54 E-value=14 Score=35.14 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=27.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
||||+|+.+|..+ ...-++|.+.||+|.-+.+...
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~~~eivaV~Tqpd 35 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEAGHEIVAVVTQPD 35 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhCCCceEEEEeCCC
Confidence 6899999887643 5667888889999988887543
No 235
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=64.44 E-value=64 Score=30.64 Aligned_cols=85 Identities=11% Similarity=0.168 Sum_probs=50.7
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCc--chhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTM--NARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
.+++||+++.++..+. +.+|.++..+. +++|..+.+.. .....++. ++.+..++..
T Consensus 87 ~~~~ri~vl~Sg~gsn---l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~~~-------- 146 (286)
T PRK06027 87 AERKRVVILVSKEDHC---LGDLLWRWRSGELPVEIAAVISNHDDLRSLVERF---------GIPFHHVPVT-------- 146 (286)
T ss_pred ccCcEEEEEEcCCCCC---HHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHh---------CCCEEEeccC--------
Confidence 4679999999888444 44555555443 68888877643 22333333 6666665411
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF 126 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~ 126 (490)
. .+ ......++.+++++.++|+||.-.+.
T Consensus 147 ~-~~----------------~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 147 K-ET----------------KAEAEARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred c-cc----------------cchhHHHHHHHHHHhCCCEEEEecch
Confidence 0 00 00123456777888899999977543
No 236
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=63.70 E-value=80 Score=32.29 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.++.+.+++.+||++|.. .....+|+.+|||++.+
T Consensus 385 ~e~~~~i~~~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEYKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhcCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 467777888899999986 33466888999999875
No 237
>PRK05541 adenylylsulfate kinase; Provisional
Probab=63.41 E-value=97 Score=26.63 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=36.4
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
|++..++.-|+|.-.++.|-..-...|++.|...|..+.++-
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 788888888899989999999999999999988888877764
No 238
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=63.20 E-value=64 Score=33.18 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLA 142 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~ 142 (490)
.++.+.+++.+||++|.. .....+|+++|||++-
T Consensus 383 ~e~~~~i~~~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 383 RELYKMLKEAKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHHhhcCCCEEEec---CchhhhhhhcCCCEEE
Confidence 466677777899999997 4566789999999874
No 239
>PRK10867 signal recognition particle protein; Provisional
Probab=62.83 E-value=29 Score=35.10 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=36.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTMNARRFQ 51 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~ 51 (490)
.-|+|+..++.|-..-...||..|+++ |+.|.++....++....
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~ 145 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAI 145 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHH
Confidence 445666667999999999999999999 99999999988776543
No 240
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=62.60 E-value=34 Score=31.80 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=33.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 10 VMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 10 Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
++|..-|+.|.......+|..++++|+.|.++..... ..+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~ 45 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDS 45 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHH
Confidence 3444567889999999999999999999999987654 344444
No 241
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=62.40 E-value=60 Score=32.67 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.++.+.++..+||++|.... ...+|+.+|+|++.+
T Consensus 346 ~e~~~~i~~~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEKKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhcCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 46667788889999998843 457889999999854
No 242
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=62.15 E-value=20 Score=31.84 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=32.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNAR 48 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (490)
-|+|+-..|-|-......||..++.+|..|.+++...++-
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 3566666688999999999999999999999999987753
No 243
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.97 E-value=37 Score=32.16 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=36.7
Q ss_pred ccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchH--HHHHHhhccceeec
Q 044012 352 GWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNE--KLVTQVLKFGLPVG 414 (490)
Q Consensus 352 ~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na--~rv~e~~G~G~~l~ 414 (490)
.|-...++|.++++ .|--.|. -+-+++=-|+|+|.+|-.+-|+.-. .|=..-+|+.+.+-
T Consensus 301 sqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv 362 (412)
T COG4370 301 SQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLV 362 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeec
Confidence 34445666666665 4443332 2334677899999999999997654 43323356665553
No 244
>PRK04328 hypothetical protein; Provisional
Probab=61.90 E-value=1.1e+02 Score=28.24 Aligned_cols=46 Identities=7% Similarity=-0.088 Sum_probs=35.8
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
.--+++.-.|+.|-..-.+.++.+-+++|+.+.+++.+...+.+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHH
Confidence 4456667777899988888888777788999999999777665544
No 245
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=61.79 E-value=23 Score=36.21 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=35.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (490)
-=+++..-|+.|-..-++.++..++++|+.|.+++.++..+.+.
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 34566667799999999999999999999999999876655443
No 246
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=61.39 E-value=85 Score=28.52 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=25.7
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~ 43 (490)
+.||.|+=.|-.|--.-.--+-.+.+.| +.+|.++++
T Consensus 2 vvKiGiiKlGNig~s~~idl~lDErAdRedI~vrv~gs 39 (277)
T PRK00994 2 VVKIGIIKLGNIGMSPVIDLLLDERADREDIDVRVVGS 39 (277)
T ss_pred eEEEEEEEecccchHHHHHHHHHhhhcccCceEEEecc
Confidence 3578888777776554444556777777 788888776
No 247
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=60.32 E-value=51 Score=33.25 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 107 EIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
++.+.+++.+||+||..... ..+|+.+|||++.+
T Consensus 349 e~~~~~~~~~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 349 EFFEILEMLKPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHHhcCCCEEEecCcc---chhhhhcCCCEEec
Confidence 44455677799999987543 35889999999875
No 248
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=60.07 E-value=78 Score=34.18 Aligned_cols=40 Identities=20% Similarity=0.104 Sum_probs=26.1
Q ss_pred HHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEecc
Q 044012 107 EIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~~ 146 (490)
++.+.|++.+||++|+-.+.. -...+-......++-++++
T Consensus 66 ~~~~~l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 66 LWVERIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHHHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCC
Confidence 445667788999999765432 3444455556667777666
No 249
>PLN02924 thymidylate kinase
Probab=59.83 E-value=92 Score=28.25 Aligned_cols=39 Identities=5% Similarity=0.095 Sum_probs=31.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+++-|+|-...+-|--.-...|++.|.++|+.|.+...+
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep 53 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFP 53 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCC
Confidence 445577777779999999999999999999998665544
No 250
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=59.53 E-value=33 Score=32.67 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=39.8
Q ss_pred hhccCCceeecccCChhHHHHHHHh----CCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHH
Q 044012 359 ILEHQAIGGFLTHCGWNSILEGVSA----GVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNI 434 (490)
Q Consensus 359 ll~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l 434 (490)
+-..+++ +|+-||-||+.+++.. ++|++.+- .-+ +|... ..+.+++
T Consensus 60 ~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn--------~G~------lGFL~--------------~~~~~~~ 109 (291)
T PRK02155 60 IGARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN--------HGR------LGFIT--------------DIPLDDM 109 (291)
T ss_pred hccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc--------CCC------ccccc--------------cCCHHHH
Confidence 3345677 9999999999999874 67888773 111 23333 4677889
Q ss_pred HHHHHHHhc
Q 044012 435 KNAICVVMD 443 (490)
Q Consensus 435 ~~~i~~~l~ 443 (490)
.++|.++++
T Consensus 110 ~~~l~~~~~ 118 (291)
T PRK02155 110 QETLPPMLA 118 (291)
T ss_pred HHHHHHHHc
Confidence 999999987
No 251
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=59.37 E-value=20 Score=32.29 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCC--ChHHHHHHHHHHHHC
Q 044012 7 KLHVMFLPYIAPG--HMVPMVDMARLFAAN 34 (490)
Q Consensus 7 ~~~Il~~~~~~~G--Hi~p~l~LA~~L~~r 34 (490)
||+|++..|.-+| ..||...++++|...
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 30 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGE 30 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhcccc
Confidence 6889888776444 589999999999553
No 252
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=59.34 E-value=33 Score=29.77 Aligned_cols=44 Identities=7% Similarity=-0.050 Sum_probs=36.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 10 VMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 10 Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
+++...|+.|-..-.+.++.+.++.|..|.+++.+...+.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHH
Confidence 46666788999999999999999999999999998777665543
No 253
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=59.24 E-value=90 Score=28.17 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.0
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
.--+++...|+.|-..-.+.++...+++|+.|.+++.+...+.+.+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 34456666778899888888988888889999999998877665554
No 254
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=58.94 E-value=95 Score=28.52 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=23.1
Q ss_pred CcEEE-EcCCCc-chHHHHHHhCCCeEEEecc
Q 044012 117 PNCIV-SDNLFP-WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 117 pD~VI-~D~~~~-~~~~~A~~lgiP~v~~~~~ 146 (490)
||+++ +|+..- -|..=|..+|||+|.+.-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 99876 565444 5788899999999998544
No 255
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=58.83 E-value=44 Score=33.66 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=35.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNAR 48 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (490)
.-|+|+..++.|-..-...||..|.++|+.|.+++...++.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 34667777799999999999999999999999999987764
No 256
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=58.81 E-value=24 Score=28.53 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=36.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRF 50 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (490)
||++.+.++-.|..-..-++..|...|++|++.......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 688999999999999999999999999999999975444333
No 257
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=58.41 E-value=58 Score=32.55 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=36.3
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
...|+|+..+|.|-..-+..||..|..+|+.|.+++...++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 35778888889999999999999999999999999987765
No 258
>PRK10490 sensor protein KdpD; Provisional
Probab=58.05 E-value=24 Score=39.50 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=39.3
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc-hhhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN-ARRFQNA 53 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~-~~~~~~~ 53 (490)
-++||.+-..||-|-.+.|+.-|++|.++|++|.+-.-+.. +...++.
T Consensus 23 g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h~r~~t~~~ 71 (895)
T PRK10490 23 GKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETHGRKETAAL 71 (895)
T ss_pred CcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCCCCHHHHHH
Confidence 46899999999999999999999999999999988776544 3333333
No 259
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.00 E-value=25 Score=29.24 Aligned_cols=45 Identities=18% Similarity=0.108 Sum_probs=38.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRF 50 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (490)
++.||++.+.+.-||-.-..-+++.|++.|.+|.....-...+.+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~ 55 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA 55 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH
Confidence 689999999999999999999999999999999988764444433
No 260
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=57.95 E-value=95 Score=28.02 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=53.4
Q ss_pred CCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCC---------ceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 17 APGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGR---------EISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 17 ~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
+.|--.-.++++-.+...||.|++++++.......+. +...+. .+.|.++... ..
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~q---m~sl~ydv~~~~l~G~l~~~~~~~~-----------~~-- 101 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQ---MESLSYDVSDFLLSGRLLFFPVNLE-----------PV-- 101 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHH---HHhcCCCchHHHhcceeEEEEeccc-----------cc--
Confidence 6788888899999999999999999998765433332 110111 2333332100 00
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP 127 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~ 127 (490)
.......+...+.+.+.++.++-|+||.|.+..
T Consensus 102 -------~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~ 134 (235)
T COG2874 102 -------NWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSA 134 (235)
T ss_pred -------ccChHHHHHHHHHHHhhHHhhcCCEEEEecccH
Confidence 001112223455666666778999999998875
No 261
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=57.94 E-value=85 Score=29.52 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=56.0
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
|.=|+++..|+.|-..-...|++.|.+.|.+|.++...... +... . +.+.
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~-------------------------~--y~~~- 50 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN-------------------------D--YADS- 50 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS-------------------------S--S--G-
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh-------------------------h--hhch-
Confidence 34578888999999999999999999999999998853211 0100 0 0000
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-c-----hHHHHHHhCCCeEEEecccHHH
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-W-----TVSIAEELGIPRLAFTGSGFFN 150 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~-----~~~~A~~lgiP~v~~~~~~~~~ 150 (490)
.... .....+..++...+.+ -++||+|...+ - -..+|+..+.++..+.......
T Consensus 51 -----~~Ek---~~R~~l~s~v~r~ls~--~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e 110 (270)
T PF08433_consen 51 -----KKEK---EARGSLKSAVERALSK--DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLE 110 (270)
T ss_dssp -----GGHH---HHHHHHHHHHHHHHTT---SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HH
T ss_pred -----hhhH---HHHHHHHHHHHHhhcc--CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHH
Confidence 1111 1111233444444543 38999998654 2 4679999999999886654433
No 262
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=57.21 E-value=25 Score=33.86 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=29.1
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+.+|||+++-.|+.| ..+|..|++.||+|+++.-..
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 345899999877777 456788999999999998754
No 263
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=56.91 E-value=1.4e+02 Score=28.73 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=60.6
Q ss_pred cceEEEEcCCCCC---Ch--HHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCC
Q 044012 7 KLHVMFLPYIAPG---HM--VPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEG 81 (490)
Q Consensus 7 ~~~Il~~~~~~~G---Hi--~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (490)
+.-|+|.|..+.| ++ .-+..|++.|.++|.+|.++.++...+..+..... .+ ..
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~------------~~---------~~ 232 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL------------LP---------GE 232 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh------------CC---------cc
Confidence 3457777755433 22 24889999999899999999887666554443110 00 00
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecc
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (490)
..++.+. .-..++..+++ +-|++|+.- .+...+|..+|+|.|.++..
T Consensus 233 ~~~l~g~--------------~sL~el~ali~--~a~l~I~~D--SGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 233 LRNLAGE--------------TSLDEAVDLIA--LAKAVVTND--SGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred cccCCCC--------------CCHHHHHHHHH--hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 0000000 01234444454 579998652 36888999999999988554
No 264
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=56.89 E-value=1.3e+02 Score=26.38 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN 34 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r 34 (490)
.+++++ .|+.||..=|+.|.+.|.++
T Consensus 39 ~~~lVv-lGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 39 LSTLVV-LGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred ceEEEE-EcCCCcHHHHHHHHHHHHhh
Confidence 456555 48999999999999999776
No 265
>PRK00784 cobyric acid synthase; Provisional
Probab=56.65 E-value=1.3e+02 Score=31.00 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=28.4
Q ss_pred eEEEEcCC-CCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYI-APGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~-~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.|++.... .-|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 45555444 569999999999999999999987765
No 266
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=56.37 E-value=13 Score=32.45 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=32.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (490)
||++.-.|+.| ..-...+.+.|.++|++|.++.++...+.+.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 67777766554 4455699999999999999999987666554
No 267
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=55.92 E-value=57 Score=30.88 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=32.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHC-C-CeEEEEeCCcch
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAAN-G-IQVTIILTTMNA 47 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~r-G-h~Vt~~~~~~~~ 47 (490)
-|+|+...|.|-..-...||..++.+ | +.|.+++...++
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 45666556889999999999999987 5 999999988765
No 268
>PRK07206 hypothetical protein; Provisional
Probab=55.80 E-value=42 Score=33.75 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
++|+++-.... -..+++++.++|+++.+++..
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcC
Confidence 46777664322 346899999999999988864
No 269
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=55.74 E-value=85 Score=31.21 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=58.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCC-CeEEEEeCC-cchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANG-IQVTIILTT-MNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rG-h~Vt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
|++|+++-.|..|+ .+|..|+++| ++|+++.-. .....+... .+.++++..+..
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~------~~~~v~~~~vD~------------- 56 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAEL------IGGKVEALQVDA------------- 56 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhh------ccccceeEEecc-------------
Confidence 67899988766664 5799999999 999999864 222333222 112344444421
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc---chHHHHHHhCCCeEEEeccc
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP---WTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~---~~~~~A~~lgiP~v~~~~~~ 147 (490)
.-.+.+.++|++. |+||.=.-.+ ....+|-..|++++-++-..
T Consensus 57 ------------------~d~~al~~li~~~--d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 57 ------------------ADVDALVALIKDF--DLVINAAPPFVDLTILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred ------------------cChHHHHHHHhcC--CEEEEeCCchhhHHHHHHHHHhCCCEEEcccCC
Confidence 1124556666644 7777543222 35557778888887765443
No 270
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=55.71 E-value=7.7 Score=33.07 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=25.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
||.++..|..|+ ++|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 566666665554 89999999999999999865
No 271
>PRK05595 replicative DNA helicase; Provisional
Probab=55.46 E-value=88 Score=31.87 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=34.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHH-HCCCeEEEEeCCcchhhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFA-ANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~-~rGh~Vt~~~~~~~~~~~~~ 52 (490)
=+++...|+.|-..-.+.+|..++ +.|+.|.|++.+...+.+..
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHH
Confidence 345667889999999999998876 56999999998876654443
No 272
>PRK06321 replicative DNA helicase; Provisional
Probab=54.99 E-value=1.1e+02 Score=31.53 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=35.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHH-CCCeEEEEeCCcchhhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAA-NGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~~ 52 (490)
=|++...|+.|-..-.+.+|...+. .|..|.|++-+...+.+..
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~ 272 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIH 272 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 3566778899999999999999874 5999999998777654443
No 273
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=54.89 E-value=14 Score=32.33 Aligned_cols=43 Identities=9% Similarity=0.271 Sum_probs=32.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
||++.-.|+.|-+.- ..|.+.|.++|++|.++.++...+.+..
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 455555565555544 7899999999999999999887777653
No 274
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=54.68 E-value=77 Score=28.09 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=24.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~ 43 (490)
..||.|+-.+-.|--.-+--|..+-+.| +.+|.++++
T Consensus 2 vvkig~ik~GniGts~v~dlllDErAdRedi~vrVvgs 39 (277)
T COG1927 2 VVKIGFIKCGNIGTSPVVDLLLDERADREDIEVRVVGS 39 (277)
T ss_pred eeEEEEEEecccchHHHHHHHHHhhcccCCceEEEecc
Confidence 3578888888777654444455555555 788888776
No 275
>PRK08760 replicative DNA helicase; Provisional
Probab=54.48 E-value=59 Score=33.47 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHH-CCCeEEEEeCCcchhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAA-NGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~ 51 (490)
=|++...|+.|-..-.+.+|...+. .|+.|.|++-+...+.+.
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~ 274 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLA 274 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHH
Confidence 4566778899999999999998875 499999999877665433
No 276
>PRK12342 hypothetical protein; Provisional
Probab=54.16 E-value=23 Score=32.84 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=27.7
Q ss_pred HHHHhhcCCCcEEEEcCCCc------chHHHHHHhCCCeEEEecc
Q 044012 108 IEKLFREQNPNCIVSDNLFP------WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 108 l~~~l~~~~pD~VI~D~~~~------~~~~~A~~lgiP~v~~~~~ 146 (490)
|-..++..+||+|++-..+. -+..+|+.||+|++.....
T Consensus 101 La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 101 LAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 33344455799999754443 3789999999999987543
No 277
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=54.14 E-value=34 Score=30.11 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCc--EEEEcCCCc-chHHHHHHhCCCeEEEecccHHH
Q 044012 105 RPEIEKLFREQNPN--CIVSDNLFP-WTVSIAEELGIPRLAFTGSGFFN 150 (490)
Q Consensus 105 ~~~l~~~l~~~~pD--~VI~D~~~~-~~~~~A~~lgiP~v~~~~~~~~~ 150 (490)
...+.+++++..++ ++|...+-. +|..+|+.+++|.|.+.|.....
T Consensus 46 ~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~ 94 (187)
T PF05728_consen 46 IAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRPY 94 (187)
T ss_pred HHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHH
Confidence 35666777775554 777776554 78889999999999987765433
No 278
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=54.04 E-value=28 Score=38.05 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=63.9
Q ss_pred EeeccchhH---hhhccCCceeeccc---CC-hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccccccc
Q 044012 349 IIKGWAPQV---LILEHQAIGGFLTH---CG-WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIW 421 (490)
Q Consensus 349 ~~~~~~p~~---~ll~~~~~~~~ItH---GG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~ 421 (490)
.+.+++++. .+++.+++ |+.- -| ..++.|++++|+|-..+|+..+--.-+..+ .-|+.++.
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P------ 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP------ 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC------
Confidence 455677765 47778888 6643 24 447889999977622222222211112222 22666654
Q ss_pred ccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q 044012 422 ATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDIRLY 487 (490)
Q Consensus 422 ~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 487 (490)
.+.++++++|.++|+.+ . ++.+++.+++.+.+. ..+...-++.+++.+.+.
T Consensus 413 -------~d~~~la~ai~~~l~~~--~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 -------NDIEGIAAAIKRALEMP--E-EEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred -------CCHHHHHHHHHHHHcCC--H-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 47899999999999732 1 133344444444433 344455567777777665
No 279
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=53.98 E-value=1e+02 Score=32.08 Aligned_cols=35 Identities=9% Similarity=0.207 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.++.+++++.+||++|.+. ...-+|+.+|||+|.+
T Consensus 427 ~~l~~~l~~~~~DlliG~s---~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 427 WHLRSLVFTEPVDFLIGNS---YGKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHHhhcCCCEEEECc---hHHHHHHHcCCCEEEe
Confidence 3667778888999999885 3577899999999886
No 280
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.95 E-value=2.2e+02 Score=27.76 Aligned_cols=128 Identities=15% Similarity=-0.018 Sum_probs=78.2
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
.++.|+.++-.|-.||--.|.-=|..|+..|.+|.++..-+.....+-.. ..+++++.++.++..+..|
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~------hprI~ih~m~~l~~~~~~p----- 78 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN------HPRIRIHGMPNLPFLQGGP----- 78 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc------CCceEEEeCCCCcccCCCc-----
Confidence 56789999999999999999999999999999999998755433222221 1379999987443221111
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcC-CCcchHHHHH----HhCCCeEEEecccHHH
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDN-LFPWTVSIAE----ELGIPRLAFTGSGFFN 150 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~-~~~~~~~~A~----~lgiP~v~~~~~~~~~ 150 (490)
..+.......-+...-+..+....++|.|++-+ -+.....++. ..|...|+=|+...+.
T Consensus 79 -------~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 79 -------RVLFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred -------hhhhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 122222222222223333333456899998776 3334444444 4477777766654443
No 281
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=53.69 E-value=24 Score=33.60 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=34.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
|||+|..-||-|-......||.+|+++|+.|.++=....
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 679999999999999999999999999999988765433
No 282
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=53.54 E-value=46 Score=32.37 Aligned_cols=100 Identities=18% Similarity=0.282 Sum_probs=62.4
Q ss_pred cceEEEEcCCCCC-----ChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCC
Q 044012 7 KLHVMFLPYIAPG-----HMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEG 81 (490)
Q Consensus 7 ~~~Il~~~~~~~G-----Hi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (490)
+..|+|.|..+.| -..-+..|++.|.++|.+|.++.++...+..++.... +.... .
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~-------~~~~~----------~-- 235 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG-------LPNAV----------I-- 235 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh-------cCCcc----------c--
Confidence 4688888873332 2345899999999999999999988555555554111 10000 0
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecc
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (490)
+..- .-..++..+++ +.|++|+. ..+...+|..+|.|.|.+...
T Consensus 236 ---l~~k--------------~sL~e~~~li~--~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 236 ---LAGK--------------TSLEELAALIA--GADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred ---cCCC--------------CCHHHHHHHHh--cCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 0000 11234444444 57888754 236788999999999998654
No 283
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=53.46 E-value=21 Score=32.78 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=34.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~ 53 (490)
||++.-.|+.+=+.-...|++.|.++ ||+|.++.++...+.+...
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 45555545455557899999999999 9999999998776666654
No 284
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=53.36 E-value=1.5e+02 Score=25.67 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCc---chHHHHHHhCCCeEEE
Q 044012 105 RPEIEKLFREQNPNCIVSDNLFP---WTVSIAEELGIPRLAF 143 (490)
Q Consensus 105 ~~~l~~~l~~~~pD~VI~D~~~~---~~~~~A~~lgiP~v~~ 143 (490)
...+.+++++.+||+|+.-.-.. .+..+|..+|.|++.=
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 34555566667899999876544 5788999999998864
No 285
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.00 E-value=82 Score=31.70 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=34.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHH-HHCCCeEEEEeCCcchhhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLF-AANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L-~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
-|+|+-.+|-|-..-...||..+ ..+|+.|.+++.+.++.....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~e 269 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIE 269 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHH
Confidence 45666666889999999999876 678999999998876654333
No 286
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=52.88 E-value=68 Score=32.58 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+||||++..+++.| +|++.|++.|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 47999988877766 688889888988777754
No 287
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=52.78 E-value=21 Score=30.95 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=32.7
Q ss_pred eEEEEcCCCCCChHH-HHHHHHHHHH-CCCeEEEEeCCcchhhhhhh
Q 044012 9 HVMFLPYIAPGHMVP-MVDMARLFAA-NGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p-~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~~~ 53 (490)
||++.-.++ ||... ...+.++|++ +||+|.++.++...+.+.-.
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~~ 46 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKWY 46 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHHH
Confidence 345544444 78766 8899999985 59999999998888766543
No 288
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=52.77 E-value=21 Score=35.62 Aligned_cols=48 Identities=8% Similarity=0.074 Sum_probs=38.6
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
.+++||++.-.|+. ..+-...+.+.|.++|++|.++.++...+.+...
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~ 51 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTPL 51 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHH
Confidence 45678988887766 4557789999999999999999998877766643
No 289
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=52.64 E-value=1.2e+02 Score=30.04 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=26.9
Q ss_pred CcceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
.+++|+++. .|..|. .+|..|.++||+|+++...
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 457899886 666664 5889999999999999854
No 290
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=52.40 E-value=24 Score=33.06 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=32.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.|++..-|+-|-..-...||..|+++|++|.++=.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~ 36 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGC 36 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence 678888888999999999999999999999988744
No 291
>PRK09739 hypothetical protein; Provisional
Probab=52.35 E-value=35 Score=30.32 Aligned_cols=38 Identities=11% Similarity=-0.006 Sum_probs=24.1
Q ss_pred CCcceEEEEcC-CCC-CChHH-HHHHHHHHHHCCCeEEEEe
Q 044012 5 NQKLHVMFLPY-IAP-GHMVP-MVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 5 ~~~~~Il~~~~-~~~-GHi~p-~l~LA~~L~~rGh~Vt~~~ 42 (490)
|+||||+++.. |-. |.-.- ...+++.|.++||+|+++-
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45789988864 432 22222 4456677778899998765
No 292
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=52.28 E-value=1.3e+02 Score=25.29 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=31.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 10 VMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 10 Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
|.+...++.|-...+..++..+.++|++|.++....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 677777899999999999999999999998888653
No 293
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=52.17 E-value=1.4e+02 Score=25.59 Aligned_cols=40 Identities=10% Similarity=0.217 Sum_probs=34.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhh
Q 044012 10 VMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARR 49 (490)
Q Consensus 10 Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~ 49 (490)
+++...++.|-......++..|+++|..|.++..+.++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~ 42 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPA 42 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChH
Confidence 5666778999999999999999999999999998766543
No 294
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=51.98 E-value=98 Score=29.33 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=16.2
Q ss_pred hhHHHHHHHhhcCCCcEEEE
Q 044012 103 LLRPEIEKLFREQNPNCIVS 122 (490)
Q Consensus 103 ~~~~~l~~~l~~~~pD~VI~ 122 (490)
.....+.+++++.+||+||.
T Consensus 108 ~~~~~L~~iIr~~~PdvVvT 127 (283)
T TIGR03446 108 EAAEPLVRVIREFRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHHcCCEEEEe
Confidence 34577888888999999986
No 295
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=51.89 E-value=41 Score=30.71 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=36.3
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
..=+++...++.|-..-..+++.+.+++|..|.|++.+...+.+.+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 3445666777999999999998888889999999999776554433
No 296
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=51.71 E-value=20 Score=31.97 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=31.8
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+=|++...|+.|-......||++|.+++|+|.-.+.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 3456677788999999999999999999999987764
No 297
>PLN02285 methionyl-tRNA formyltransferase
Probab=51.53 E-value=1e+02 Score=29.95 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=23.3
Q ss_pred HHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEecc
Q 044012 107 EIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~~ 146 (490)
++.+.+++.+||++|+=.+.. -...+-......++-++++
T Consensus 84 ~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpS 124 (334)
T PLN02285 84 DFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPS 124 (334)
T ss_pred HHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEecc
Confidence 445567788999999764322 3333334444455665544
No 298
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=51.44 E-value=19 Score=35.85 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=37.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
+++||++.-.|+.|= .-...+.+.|.+.|++|.++.++...+.+...
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 457898887776655 55899999999999999999998877776643
No 299
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.06 E-value=96 Score=31.37 Aligned_cols=42 Identities=10% Similarity=0.179 Sum_probs=35.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHH-HCCCeEEEEeCCcchhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFA-ANGIQVTIILTTMNARRF 50 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~-~rGh~Vt~~~~~~~~~~~ 50 (490)
-|+|+..+|.|-..-...||..|. ++|..|.++....++...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 456666779999999999999997 589999999998777643
No 300
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=50.95 E-value=79 Score=32.19 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.++.+.+++.+||++|... ....+|+.+|||++.+
T Consensus 377 ~e~~~~i~~~~pdllig~s---~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 377 LEFEEILEKLKPDIIFSGI---KEKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHHhcCCCEEEEcC---cchhhhhhcCCCeEec
Confidence 3566667778999999875 3567899999999875
No 301
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=50.53 E-value=29 Score=32.83 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCC
Q 044012 294 FSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCG 373 (490)
Q Consensus 294 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG 373 (490)
.+.+..+.+.+|+.....+.||.+.+. . .-.++.++++...+-+++.. ||-...
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG---~---------------------ga~rlL~~ld~~~~~~~pK~--~iGySD 99 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGG---Y---------------------GANRLLPYLDYDLIRANPKI--FVGYSD 99 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCc---C---------------------CHHHhhhhCCHHHHhhCCeE--EEEecH
Confidence 345567889999999999999999877 1 12445566666666677777 888888
Q ss_pred hhHHHHHHHh--CCcEeeccCccc
Q 044012 374 WNSILEGVSA--GVPMVTWPVFAE 395 (490)
Q Consensus 374 ~~s~~eal~~--GvP~l~~P~~~D 395 (490)
..+++-+++. |++.+-=|...+
T Consensus 100 iTaL~~~l~~~~g~~t~hGp~~~~ 123 (282)
T cd07025 100 ITALHLALYAKTGLVTFHGPMLAS 123 (282)
T ss_pred HHHHHHHHHHhcCceEEECccccc
Confidence 8888888764 788877776443
No 302
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.53 E-value=66 Score=32.24 Aligned_cols=48 Identities=8% Similarity=0.151 Sum_probs=40.7
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
++..|+++-.-+.|-....--||..|..+|+.|.+++...++......
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQ 146 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQ 146 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHH
Confidence 345677888889999999999999999999999999998887655444
No 303
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=50.48 E-value=1.2e+02 Score=31.06 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=51.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
+.+|+++...+ .-...|++.|.+.|-+|..+......+..++. + ..... .
T Consensus 310 ~gkrvai~~~~-----~~~~~la~~L~elG~~v~~~~~~~~~~~~~~~----------------~--------~~~i~-~ 359 (455)
T PRK14476 310 GGKRVAIAAEP-----DLLLALGSFLAEMGAEIVAAVTTTKSPALEDL----------------P--------AEEVL-I 359 (455)
T ss_pred cCCEEEEEeCH-----HHHHHHHHHHHHCCCEEEEEEeCCCcHHHHhC----------------C--------cCcEE-e
Confidence 35677766422 46677888888889998887765422222111 0 00000 0
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
. + ..++.+.++ ++|++|.+.. ...+|+.+|||++.+
T Consensus 360 ~-----D------------~~~le~~~~--~~dliig~s~---~~~~a~~~gip~~~~ 395 (455)
T PRK14476 360 G-----D------------LEDLEELAE--GADLLITNSH---GRQAAERLGIPLLRV 395 (455)
T ss_pred C-----C------------HHHHHHhcc--CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 0 0 113444454 7999998854 567899999999875
No 304
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=50.08 E-value=84 Score=26.83 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=20.6
Q ss_pred eecccCChh------HHHHHHHhCCcEeeccC
Q 044012 367 GFLTHCGWN------SILEGVSAGVPMVTWPV 392 (490)
Q Consensus 367 ~~ItHGG~~------s~~eal~~GvP~l~~P~ 392 (490)
.+++|.|-| .+.+|...++|+|++.-
T Consensus 62 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 367776644 78899999999999964
No 305
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=50.07 E-value=54 Score=33.83 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~ 43 (490)
||||++..+++.| +|+++|++. |++|.++..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 6999998888777 578888876 999888854
No 306
>PLN02929 NADH kinase
Probab=49.58 E-value=24 Score=33.64 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=43.2
Q ss_pred ccCCceeecccCChhHHHHHHH---hCCcEeeccCcc------cccchHHHHHHhhccceeeccccccccccCCCCccch
Q 044012 361 EHQAIGGFLTHCGWNSILEGVS---AGVPMVTWPVFA------EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINR 431 (490)
Q Consensus 361 ~~~~~~~~ItHGG~~s~~eal~---~GvP~l~~P~~~------DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~ 431 (490)
..+++ +|+-||-||+..+.. .++|+|.+=... .++.|.-.. ..-+|... ..+.
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~--~r~lGfL~--------------~~~~ 124 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDA--RRSTGHLC--------------AATA 124 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccc--ccCccccc--------------cCCH
Confidence 34577 999999999999855 468988875421 122222111 12245444 4678
Q ss_pred hHHHHHHHHHhc
Q 044012 432 GNIKNAICVVMD 443 (490)
Q Consensus 432 ~~l~~~i~~~l~ 443 (490)
+++.++|.++++
T Consensus 125 ~~~~~~L~~il~ 136 (301)
T PLN02929 125 EDFEQVLDDVLF 136 (301)
T ss_pred HHHHHHHHHHHc
Confidence 899999999998
No 307
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=49.46 E-value=1.6e+02 Score=26.07 Aligned_cols=44 Identities=20% Similarity=0.105 Sum_probs=34.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc-chhhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM-NARRFQN 52 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~-~~~~~~~ 52 (490)
=+.+...++.|=..-.+.++.....+|..|.|+.++. ..+.+.+
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHH
Confidence 3456667799999999999999999999999999986 3444444
No 308
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=49.42 E-value=28 Score=32.50 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=31.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
|+|++..-||-|-..-...||.+|+++|++|.++=
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD 35 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIG 35 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 57888888899999999999999999999998883
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=49.28 E-value=1.1e+02 Score=27.96 Aligned_cols=47 Identities=6% Similarity=-0.079 Sum_probs=37.3
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
+.--+++...|+.|-..-.++++.+-+++|..|.+++.+...+.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 34556777788999999988888777789999999999887665544
No 310
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=49.17 E-value=18 Score=33.96 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTMNARRFQN 52 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~~ 52 (490)
--+++...++.|-....+.++..++.. |+.|.|++.+...+.+..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~ 76 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTAR 76 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHH
Confidence 345666677999999999999999877 999999998776544433
No 311
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=48.91 E-value=1.2e+02 Score=25.32 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=21.1
Q ss_pred eecccCCh------hHHHHHHHhCCcEeeccC
Q 044012 367 GFLTHCGW------NSILEGVSAGVPMVTWPV 392 (490)
Q Consensus 367 ~~ItHGG~------~s~~eal~~GvP~l~~P~ 392 (490)
++++|+|. +.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 38888664 478899999999999964
No 312
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=48.75 E-value=42 Score=30.59 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=40.5
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
|.+|++.--++.|--.....++.+|++.|+.|..+....-.+.....
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~L 47 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLL 47 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHH
Confidence 46899999999999999999999999999999999987665554443
No 313
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.67 E-value=29 Score=34.08 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=37.3
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRF 50 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (490)
.--|+|+..-+.|-...+..+|-.+.++|+.+.++|-..|+.-.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 34567777779999999999999999999999999988776433
No 314
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=48.55 E-value=44 Score=30.14 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=39.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
.+.||++.+.++-.|-....-++..|..+|++|+++....-.+.+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~ 133 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILE 133 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHH
Confidence 45799999999999999999999999999999999997655544444
No 315
>PRK09165 replicative DNA helicase; Provisional
Probab=48.43 E-value=1.3e+02 Score=31.17 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=34.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHC---------------CCeEEEEeCCcchhhhhh
Q 044012 10 VMFLPYIAPGHMVPMVDMARLFAAN---------------GIQVTIILTTMNARRFQN 52 (490)
Q Consensus 10 Il~~~~~~~GHi~p~l~LA~~L~~r---------------Gh~Vt~~~~~~~~~~~~~ 52 (490)
+++...|+.|-..-.+.+|...+.+ |..|.|++-+...+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 5667788999999999999888753 789999998887755544
No 316
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=48.14 E-value=78 Score=27.13 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.3
Q ss_pred eecccCChh------HHHHHHHhCCcEeecc
Q 044012 367 GFLTHCGWN------SILEGVSAGVPMVTWP 391 (490)
Q Consensus 367 ~~ItHGG~~------s~~eal~~GvP~l~~P 391 (490)
.+++|.|-| .+.+|...++|+|++.
T Consensus 66 v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 66 VCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 388888754 7899999999999996
No 317
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=47.95 E-value=1e+02 Score=30.69 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=52.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
..|+++.. +-.....|++.|.+-|-+|..+..........+......... ...+. . .
T Consensus 271 g~~v~i~~-----~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~-~~~v~-~--------------~-- 327 (398)
T PF00148_consen 271 GKRVAIYG-----DPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEES-DPEVI-I--------------D-- 327 (398)
T ss_dssp T-EEEEES-----SHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTT-CSEEE-E--------------S--
T ss_pred CceEEEEc-----CchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCC-CcEEE-e--------------C--
Confidence 45777643 335667888889888999888887655433222100000000 00000 0 0
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.-..++.+.+++.+||+++.+.. ...+|+.+++|++.+
T Consensus 328 ----------------~~~~~~~~~l~~~~pdl~ig~~~---~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 328 ----------------PDPEEIEELLEELKPDLLIGSSH---ERYLAKKLGIPLIRI 365 (398)
T ss_dssp ----------------CBHHHHHHHHHHHT-SEEEESHH---HHHHHHHTT--EEE-
T ss_pred ----------------CCHHHHHHHHHhcCCCEEEechh---hHHHHHHhCCCeEEE
Confidence 01246777788889999999844 667888999998875
No 318
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=47.54 E-value=81 Score=30.33 Aligned_cols=32 Identities=3% Similarity=-0.047 Sum_probs=24.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~ 44 (490)
||||++...++. + .+++.|++. |++|..+...
T Consensus 1 ~~~vLv~g~~~~-~-----~~~~~l~~~~~g~~vi~~d~~ 34 (326)
T PRK12767 1 MMNILVTSAGRR-V-----QLVKALKKSLLKGRVIGADIS 34 (326)
T ss_pred CceEEEecCCcc-H-----HHHHHHHHhccCCEEEEECCC
Confidence 689999887433 2 788999888 5988887654
No 319
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=47.17 E-value=23 Score=32.16 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 20 HMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 20 Hi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|+..|.+.|++|.++||+|+++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999987
No 320
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=47.06 E-value=1.1e+02 Score=28.00 Aligned_cols=101 Identities=14% Similarity=0.195 Sum_probs=53.6
Q ss_pred CcceEEEEcCCCC-CChHH---HHHHHHHHHHCCCeEEEEeCCcc--hhhhhhhhcccccCCCceE--EEEeeCCCCcCC
Q 044012 6 QKLHVMFLPYIAP-GHMVP---MVDMARLFAANGIQVTIILTTMN--ARRFQNAIDRDSRLGREIS--LRILRFPSQEAG 77 (490)
Q Consensus 6 ~~~~Il~~~~~~~-GHi~p---~l~LA~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~ 77 (490)
++..|+|.+..+. .--.| +..|++.|.++|.+|.++..+.. .+....... +.. +..+.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~-------~~~~~~~~~~------- 169 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA-------GLQNPVINLA------- 169 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT-------THTTTTEEET-------
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH-------hcccceEeec-------
Confidence 3467888876644 22223 68999999999989988888776 223222200 110 11110
Q ss_pred CCCCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEeccc
Q 044012 78 LPEGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~ 147 (490)
.. .-..++..+++ ..|++|+-- .+...+|..+|+|.|.++...
T Consensus 170 ---------~~--------------~~l~e~~ali~--~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 170 ---------GK--------------TSLRELAALIS--RADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp ---------TT--------------S-HHHHHHHHH--TSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred ---------CC--------------CCHHHHHHHHh--cCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 00 00123444444 579998542 367889999999999997654
No 321
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=47.02 E-value=41 Score=28.54 Aligned_cols=52 Identities=13% Similarity=0.291 Sum_probs=39.0
Q ss_pred CCCC-CCcceEEEEcCCCCCChHH-HHHHHHHHHHC--CCeEEEEeCCcchhhhhhh
Q 044012 1 MVSE-NQKLHVMFLPYIAPGHMVP-MVDMARLFAAN--GIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 1 m~~~-~~~~~Il~~~~~~~GHi~p-~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~ 53 (490)
|++. ++.|||+-.- .+-||..+ ...+.++|.++ +|+|+.+.+....+.+.-+
T Consensus 1 ~~~~~~~~~rIaWgI-TGaG~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVvk~Y 56 (187)
T COG1036 1 MEMTEKKKKRIAWGI-TGAGHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVVKMY 56 (187)
T ss_pred CcccccccceEEEEE-eccccccHHHHHHHHHHHhhcCCceEEEeehhhHHHHHHHH
Confidence 5555 4557776554 56688887 88999999998 7999999997776655543
No 322
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=46.97 E-value=90 Score=31.43 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
|||+++-.+..+ ..|++++++-|+.+++++.+..
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQSPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhCCCccEEEEECCC
Confidence 688888877664 4678888888888888766543
No 323
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=46.84 E-value=87 Score=26.82 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=21.0
Q ss_pred ecccCChh------HHHHHHHhCCcEeeccC
Q 044012 368 FLTHCGWN------SILEGVSAGVPMVTWPV 392 (490)
Q Consensus 368 ~ItHGG~~------s~~eal~~GvP~l~~P~ 392 (490)
+++|+|-| .+.||...++|||++.-
T Consensus 64 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 64 VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 78888755 77899999999999953
No 324
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=46.81 E-value=98 Score=30.21 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=25.3
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCC-eEEEEe
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGI-QVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh-~Vt~~~ 42 (490)
+..||+++-.++.| ..+|+.|++.|+ +++++=
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD 55 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIAD 55 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEc
Confidence 46789999988776 678999999998 555553
No 325
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=46.77 E-value=1.9e+02 Score=28.17 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=60.2
Q ss_pred ceEEEEcCCCCC---ChH--HHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCc
Q 044012 8 LHVMFLPYIAPG---HMV--PMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGC 82 (490)
Q Consensus 8 ~~Il~~~~~~~G---Hi~--p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (490)
.-|+|.|..+.| ++- -+..|++.|.++|++|.++..+...+..++.... .+.+ .....
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~------------~~~~-----~~~~~ 243 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAA------------LNTE-----QQAWC 243 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHh------------cccc-----cccce
Confidence 457777754332 222 3789999999889999999887666655543110 0000 00000
Q ss_pred cCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecc
Q 044012 83 ENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (490)
.++.+. .-..++..+++ +.|++|+.- .+...+|..+|+|.|.++..
T Consensus 244 ~~l~g~--------------~sL~el~ali~--~a~l~I~nD--TGp~HlAaA~g~P~valfGp 289 (348)
T PRK10916 244 RNLAGE--------------TQLEQAVILIA--ACKAIVTND--SGLMHVAAALNRPLVALYGP 289 (348)
T ss_pred eeccCC--------------CCHHHHHHHHH--hCCEEEecC--ChHHHHHHHhCCCEEEEECC
Confidence 000000 01234444444 578888652 36888999999999998653
No 326
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=46.53 E-value=34 Score=31.88 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHhhcCCCcEEEEcCCCc------chHHHHHHhCCCeEEEecc
Q 044012 108 IEKLFREQNPNCIVSDNLFP------WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 108 l~~~l~~~~pD~VI~D~~~~------~~~~~A~~lgiP~v~~~~~ 146 (490)
|-..+++..||+|++-..+. -+..+|+.||+|++.....
T Consensus 104 La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 104 LAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 33444555799999644332 4788999999999987554
No 327
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=46.32 E-value=2e+02 Score=24.99 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=55.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe---CCc-chh--hhhhhhcccccCCCceEEEEeeCCCCcCCCCCCc
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL---TTM-NAR--RFQNAIDRDSRLGREISLRILRFPSQEAGLPEGC 82 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~---~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (490)
-|.+++..+.|-..-.+.+|-..+.+|+.|.++- ... ..+ .+++. ++.++..... +..
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~---------~~~~~~~g~g-----~~~-- 70 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH---------GVEFQVMGTG-----FTW-- 70 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc---------CcEEEECCCC-----Cee--
Confidence 4666777899999999999999999999996653 321 111 12211 4555554311 110
Q ss_pred cCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC
Q 044012 83 ENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF 126 (490)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~ 126 (490)
...+ .. .-............+.+.+.++|+||.|-..
T Consensus 71 ---~~~~-~~---~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~ 107 (173)
T TIGR00708 71 ---ETQN-RE---ADTAIAKAAWQHAKEMLADPELDLVLLDELT 107 (173)
T ss_pred ---cCCC-cH---HHHHHHHHHHHHHHHHHhcCCCCEEEehhhH
Confidence 0000 01 1112233445666677778899999999654
No 328
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=46.09 E-value=34 Score=32.65 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|||+|+..|+.| ..+|..|++.||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 588888777666 4678889999999999987
No 329
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=46.09 E-value=35 Score=31.79 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=32.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|..|+|+.-||-|-..-...||.+|+++|++|.++=..
T Consensus 1 m~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 34688887789999999999999999999999988543
No 330
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=45.67 E-value=2.1e+02 Score=28.48 Aligned_cols=35 Identities=37% Similarity=0.609 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.++.+.+++.+||++|.+.. ....++.+|+|++.+
T Consensus 338 ~~~~~~~~~~~pdl~ig~~~---~~~~~~~~~ip~~~~ 372 (399)
T cd00316 338 EELEELIRELKPDLIIGGSK---GRYIAKKLGIPLVRI 372 (399)
T ss_pred HHHHHHHhhcCCCEEEECCc---HHHHHHHhCCCEEEc
Confidence 46667788889999998853 566778899999865
No 331
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=45.67 E-value=83 Score=25.39 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=16.4
Q ss_pred HhhHHHHHHHhhcCCCcEEEEcC
Q 044012 102 ELLRPEIEKLFREQNPNCIVSDN 124 (490)
Q Consensus 102 ~~~~~~l~~~l~~~~pD~VI~D~ 124 (490)
......+.+++++.+||+|++-.
T Consensus 86 ~~~~~~l~~~i~~~~p~~V~t~~ 108 (128)
T PF02585_consen 86 EELVRDLEDLIREFRPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHHHH-ESEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCEEEECC
Confidence 35567788888888999998653
No 332
>PRK13768 GTPase; Provisional
Probab=45.67 E-value=65 Score=29.92 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=30.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
-+++...++.|-..-...++..|+++|+.|.++....
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4455556688888889999999999999999987543
No 333
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=45.51 E-value=3.1e+02 Score=27.08 Aligned_cols=101 Identities=20% Similarity=0.236 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCch-hH--HHhhccCCCceEeeccchh---HhhhccCCcee
Q 044012 294 FSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPD-GF--EDEVRRNDRGFIIKGWAPQ---VLILEHQAIGG 367 (490)
Q Consensus 294 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~-~~--~~~~~~~~~nv~~~~~~p~---~~ll~~~~~~~ 367 (490)
.+...+..+++++++.+.++.+.+... ..-..+..+++. .. +....+..-.+.+..|+|| +.+|-.||+ .
T Consensus 192 Ye~~~l~~ll~~~~~~~~pv~llvp~g---~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~-N 267 (374)
T PF10093_consen 192 YENAALASLLDAWAASPKPVHLLVPEG---RALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF-N 267 (374)
T ss_pred CCchHHHHHHHHHhcCCCCeEEEecCC---ccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc-c
Confidence 345668888888888777776666554 221122221210 00 0000100224667789986 559999997 3
Q ss_pred ecccCChhHHHHHHHhCCcEeeccCcccccchHHH
Q 044012 368 FLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKL 402 (490)
Q Consensus 368 ~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~r 402 (490)
|| . |=-|+.-|..+|+|.|=-.. =|.++|-.
T Consensus 268 fV-R-GEDSfVRAqwAgkPFvWhIY--pQ~d~aHl 298 (374)
T PF10093_consen 268 FV-R-GEDSFVRAQWAGKPFVWHIY--PQEDDAHL 298 (374)
T ss_pred eE-e-cchHHHHHHHhCCCceEecC--cCchhhHH
Confidence 33 3 66799999999999874333 34444443
No 334
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=45.38 E-value=60 Score=26.84 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=38.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
.+|++.+..+-+|-.----++..|.+.|++|.........+.+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~ 46 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIK 46 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 589999999999999999999999999999999987665444433
No 335
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=45.25 E-value=35 Score=32.84 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCC
Q 044012 294 FSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCG 373 (490)
Q Consensus 294 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG 373 (490)
.+.+....|.+|+.....+.||.+.+. ..-.++.++++...+-+++.. ||-...
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG------------------------~g~~rlL~~lD~~~i~~~PK~--fiGySD 103 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGG------------------------DDSNELLPYLDYELIKKNPKI--FIGYSD 103 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcc------------------------cCHhhhhhhcCHHHHhhCCCE--EEeccH
Confidence 355667889999999999999998876 112455567777777777776 888888
Q ss_pred hhHHHHHHH--hCCcEeeccCcc
Q 044012 374 WNSILEGVS--AGVPMVTWPVFA 394 (490)
Q Consensus 374 ~~s~~eal~--~GvP~l~~P~~~ 394 (490)
..+++-+++ +|++.+--|...
T Consensus 104 iTaL~~al~~~~g~~t~hGp~~~ 126 (308)
T cd07062 104 ITALHLAIYKKTGLVTYYGPNLL 126 (308)
T ss_pred HHHHHHHHHHhcCCeEEECcccc
Confidence 888888874 377777667643
No 336
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=44.97 E-value=38 Score=30.31 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=26.3
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
||+++++-.+-.| .+||..|+..||+|++.+...-.
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCChh
Confidence 4667766544333 57899999999999999765443
No 337
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=44.96 E-value=42 Score=31.98 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=32.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
||.+|.|..-||-|-..-...||..|+++|++|.++=.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~ 40 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGC 40 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEec
Confidence 45577777777889999999999999999999999943
No 338
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=44.85 E-value=48 Score=31.83 Aligned_cols=35 Identities=29% Similarity=0.207 Sum_probs=28.1
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.+|||.|+-.|..| .++|+.|+++||+|+++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 46899999766555 578999999999999887543
No 339
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=44.80 E-value=2.3e+02 Score=25.25 Aligned_cols=151 Identities=11% Similarity=0.090 Sum_probs=78.2
Q ss_pred ccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeecc
Q 044012 274 WLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGW 353 (490)
Q Consensus 274 ~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~ 353 (490)
|++-. .+.++.|..|.++ ...++.|.+.+.++.++ ... +.+.+.+... ...+.....
T Consensus 5 ~l~l~-~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~------------~~~~l~~l~~--~~~i~~~~~ 61 (202)
T PRK06718 5 MIDLS-NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE------------LTENLVKLVE--EGKIRWKQK 61 (202)
T ss_pred EEEcC-CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC------------CCHHHHHHHh--CCCEEEEec
Confidence 44544 4668888777543 34455556667776555 323 1112222221 223544444
Q ss_pred chhHhhhccCCceeecccCChhHHHHHHH----hCCcEeeccCcccccch-----HHHHHHhhccceeeccccccccccC
Q 044012 354 APQVLILEHQAIGGFLTHCGWNSILEGVS----AGVPMVTWPVFAEQFNN-----EKLVTQVLKFGLPVGNEIWKIWATQ 424 (490)
Q Consensus 354 ~p~~~ll~~~~~~~~ItHGG~~s~~eal~----~GvP~l~~P~~~DQ~~n-----a~rv~e~~G~G~~l~~~~~~~~~~~ 424 (490)
.....-+..+++ +|.--+.-.+.+.++ .++++-+ .|.+.. -..+ ++-++-+.+... |
T Consensus 62 ~~~~~~l~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~-----G-- 127 (202)
T PRK06718 62 EFEPSDIVDAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTD-----G-- 127 (202)
T ss_pred CCChhhcCCceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECC-----C--
Confidence 444556777787 777666665555554 4555433 343322 2333 233333444332 0
Q ss_pred CCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Q 044012 425 DSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKK 465 (490)
Q Consensus 425 ~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~ 465 (490)
.++. -+..|++.|.+++. ++...+-+.+.++++++++
T Consensus 128 ~sP~-la~~lr~~ie~~~~---~~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 128 ASPK-LAKKIRDELEALYD---ESYESYIDFLYECRQKIKE 164 (202)
T ss_pred CChH-HHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHHH
Confidence 0122 33557777777773 2334677777777777774
No 340
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=44.67 E-value=2.1e+02 Score=33.04 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=31.9
Q ss_pred CCCCCCcceEEEEcCCCC--CCh----HHHHHHHHHHHHCCCeEEEEeCC
Q 044012 1 MVSENQKLHVMFLPYIAP--GHM----VPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~--GHi----~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|-....-.||+++..+.. |+. +.-..++++|.+.|++|.++.+.
T Consensus 1 m~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~n 50 (1068)
T PRK12815 1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPN 50 (1068)
T ss_pred CCCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCC
Confidence 333344578999887743 432 35678999999999999999764
No 341
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=44.62 E-value=36 Score=31.56 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=62.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCc-cC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGC-EN 84 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~ 84 (490)
+...|.|.-.|+-|--.-.-.|++.|+++|+.|-++.-......--..+ .|+.++...+... +.-+ .+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl-----LGDRiRM~~~~~d------~~vfIRS 96 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL-----LGDRIRMQELSRD------PGVFIRS 96 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S-----S--GGGCHHHHTS------TTEEEEE
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc-----cccHHHhcCcCCC------CCEEEee
Confidence 4467888888999999999999999999999999998654433222210 1223332222100 0000 00
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEE
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLA 142 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~ 142 (490)
.. -.....-......+...+++..++|+||++..-. .-..+++...+=++.
T Consensus 97 ~a-------tRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v 149 (266)
T PF03308_consen 97 MA-------TRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLV 149 (266)
T ss_dssp E----------SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEE
T ss_pred cC-------cCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEE
Confidence 00 0111122223445667778888999999997554 334455555554444
No 342
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.53 E-value=31 Score=32.31 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=38.3
Q ss_pred cCCceeecccCChhHHHHHHH------hCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHH
Q 044012 362 HQAIGGFLTHCGWNSILEGVS------AGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIK 435 (490)
Q Consensus 362 ~~~~~~~ItHGG~~s~~eal~------~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~ 435 (490)
.+++ +|+-||-||+..++. .++|++.+-. - .+|... +.+.+++.
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~--------G------~lGFL~--------------~~~~~~~~ 84 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT--------G------HLGFYT--------------DWRPFEVD 84 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC--------C------Cceecc--------------cCCHHHHH
Confidence 4566 999999999999986 4889888842 1 123332 45678888
Q ss_pred HHHHHHhc
Q 044012 436 NAICVVMD 443 (490)
Q Consensus 436 ~~i~~~l~ 443 (490)
+++.++++
T Consensus 85 ~~l~~i~~ 92 (265)
T PRK04885 85 KLVIALAK 92 (265)
T ss_pred HHHHHHHc
Confidence 88888887
No 343
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.48 E-value=94 Score=30.90 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=32.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNAR 48 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (490)
-|+|+...|.|-..-+..||..+.++|+.|.+++...++.
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 3445554588999999999999999999999999887754
No 344
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=44.44 E-value=2.7e+02 Score=30.28 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=29.0
Q ss_pred eEEEEcCC-CCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYI-APGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~-~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.|.+.+.. ..|-..-.+.|++.|.++|.+|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 56666544 568899999999999999999999875
No 345
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=44.35 E-value=1.1e+02 Score=29.17 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=33.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
++..|+|...++.|-..-+..|+..|.++|+.|.++.....
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 34556666677999999999999999999999998886543
No 346
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=44.07 E-value=1.7e+02 Score=32.95 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEec
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~ 145 (490)
.++.+.+++.+||++|.... ..-+|+++|||++....
T Consensus 379 ~el~~~i~~~~pDLlig~~~---~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 379 AGLLRVMREKMPDLIVAGGK---TKFLALKTRTPFLDINH 415 (917)
T ss_pred HHHHHHHHhcCCCEEEecCc---hhhHHHHcCCCeEEccC
Confidence 46667788889999998643 45588999999997653
No 347
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=44.00 E-value=39 Score=29.42 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=23.8
Q ss_pred HHhhcCCCcEEEEcCCCcc--hHHHHHHhCCCeEEEe
Q 044012 110 KLFREQNPNCIVSDNLFPW--TVSIAEELGIPRLAFT 144 (490)
Q Consensus 110 ~~l~~~~pD~VI~D~~~~~--~~~~A~~lgiP~v~~~ 144 (490)
+.+.+.+||+||....... ....-+..|||++.+.
T Consensus 63 E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 63 ELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 3444579999998654432 3444578899998874
No 348
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=43.96 E-value=27 Score=35.69 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=39.6
Q ss_pred ccCCceeecccCChhHHHHHHHh----CCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHH
Q 044012 361 EHQAIGGFLTHCGWNSILEGVSA----GVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKN 436 (490)
Q Consensus 361 ~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~ 436 (490)
..+++ +|+=||-||+..|... ++|++.+ |.-+ +|... .++.+++..
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G~------LGFLt--------------~i~~~e~~~ 310 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------SMGS------LGFMT--------------PFHSEQYRD 310 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------eCCC------cceec--------------ccCHHHHHH
Confidence 45677 9999999999999774 5787776 2211 34432 567899999
Q ss_pred HHHHHhc
Q 044012 437 AICVVMD 443 (490)
Q Consensus 437 ~i~~~l~ 443 (490)
+|.++++
T Consensus 311 ~Le~il~ 317 (508)
T PLN02935 311 CLDAILK 317 (508)
T ss_pred HHHHHHc
Confidence 9999997
No 349
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=43.92 E-value=48 Score=31.60 Aligned_cols=38 Identities=5% Similarity=-0.037 Sum_probs=28.2
Q ss_pred CcceEEEEcCCCCC-C---hHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPG-H---MVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~G-H---i~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+++||+++..|..+ | +....+++++|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 46799998865332 2 34567899999999999988753
No 350
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=43.91 E-value=52 Score=29.55 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCC--ChHHHHHHHHHHHH
Q 044012 8 LHVMFLPYIAPG--HMVPMVDMARLFAA 33 (490)
Q Consensus 8 ~~Il~~~~~~~G--Hi~p~l~LA~~L~~ 33 (490)
|||++..|+-+| ..||...+++.|..
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 578887776443 58999999999965
No 351
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=43.56 E-value=2e+02 Score=27.17 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=34.2
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
.+++|+++-.|..|. -+|+.|+++||.|.++.-+.........
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 357899988887775 4799999999999999987776655554
No 352
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=43.54 E-value=23 Score=30.21 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=30.1
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (490)
+..+|+++-++++||- -|.-|++.|.+|++..-+...+...
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~ 43 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEK 43 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHH
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHH
Confidence 4679999999999874 5788999999999999877644333
No 353
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=43.43 E-value=29 Score=33.05 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|||+++-.|..| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 578888776665 5678889999999999986
No 354
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.09 E-value=33 Score=32.53 Aligned_cols=56 Identities=5% Similarity=0.043 Sum_probs=39.9
Q ss_pred hhhccCCceeecccCChhHHHHHHH----hCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhH
Q 044012 358 LILEHQAIGGFLTHCGWNSILEGVS----AGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGN 433 (490)
Q Consensus 358 ~ll~~~~~~~~ItHGG~~s~~eal~----~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~ 433 (490)
++...+++ +|+-||-||+..++. .++|++.+-. -+ +|... ..+.++
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~--------G~------lGFLt--------------~~~~~~ 109 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA--------GH------LGFLT--------------DITVDE 109 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC--------CC------cccCC--------------cCCHHH
Confidence 33446777 999999999998866 3788888731 11 23322 467788
Q ss_pred HHHHHHHHhc
Q 044012 434 IKNAICVVMD 443 (490)
Q Consensus 434 l~~~i~~~l~ 443 (490)
+.++|.++++
T Consensus 110 ~~~~l~~i~~ 119 (287)
T PRK14077 110 AEKFFQAFFQ 119 (287)
T ss_pred HHHHHHHHHc
Confidence 9999999887
No 355
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=43.05 E-value=36 Score=29.71 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=34.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (490)
+...++|...+|.|-..=..++++++.++|+.|.|+..++..+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 4567888888899999999999999999999999998765544443
No 356
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=43.05 E-value=44 Score=29.71 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=32.0
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
-++||.|-..|+-|-.+.|+.=|++|.++|.+|.+..-+..
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 35899999999999999999999999999999998876543
No 357
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=43.00 E-value=63 Score=32.59 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEe
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIIL 42 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~ 42 (490)
|||+++..++..| +|+++|++. |+.+.++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~ 31 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVA 31 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEe
Confidence 6999999887766 599999886 54444443
No 358
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=42.98 E-value=2.2e+02 Score=25.50 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=23.2
Q ss_pred HHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~ 143 (490)
+++.+.+++.++|++|+-.+.. -...+-+.+...++-+
T Consensus 68 ~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNi 106 (207)
T PLN02331 68 DELVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSILNI 106 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCcchhCCHHHHhhCCCCEEEE
Confidence 4566778888999999875433 3333444444444544
No 359
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=42.86 E-value=51 Score=28.12 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=25.9
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHHcCC-ceE
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKESGH-SFI 314 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~-~~i 314 (490)
.+|+++||-...+..++...++++.+.+. +++
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~ 35 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVV 35 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 59999999877777788999999998764 443
No 360
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=42.79 E-value=26 Score=34.10 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=27.2
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
||||.|+..|..| ..+|..|+++||+|+++...
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 4789999877766 46788999999999999864
No 361
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.67 E-value=33 Score=32.64 Aligned_cols=56 Identities=11% Similarity=0.240 Sum_probs=41.2
Q ss_pred hhhccCCceeecccCChhHHHHHHHh----CCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhH
Q 044012 358 LILEHQAIGGFLTHCGWNSILEGVSA----GVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGN 433 (490)
Q Consensus 358 ~ll~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~ 433 (490)
.+...+++ +|+=||-||+..++.. ++|++.+-. -+ +|... ..+.++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G~------lGFLt--------------~~~~~~ 109 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINT--------GR------LGFLA--------------TVSKEE 109 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec--------CC------CCccc--------------ccCHHH
Confidence 34445777 9999999999999873 789888832 11 23332 567889
Q ss_pred HHHHHHHHhc
Q 044012 434 IKNAICVVMD 443 (490)
Q Consensus 434 l~~~i~~~l~ 443 (490)
+.++|.++++
T Consensus 110 ~~~~l~~i~~ 119 (292)
T PRK01911 110 IEETIDELLN 119 (292)
T ss_pred HHHHHHHHHc
Confidence 9999999998
No 362
>PRK11519 tyrosine kinase; Provisional
Probab=42.66 E-value=1.1e+02 Score=33.34 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=32.2
Q ss_pred CcceEEEEc--CCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 6 QKLHVMFLP--YIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 6 ~~~~Il~~~--~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
++.|+++++ .|+.|-..-...||..|++.|++|.++-....
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 345666665 45789999999999999999999999965443
No 363
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=42.30 E-value=50 Score=29.33 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=28.7
Q ss_pred ceEEEEc--CCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLP--YIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~--~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+|++.++ -++.|-..-...||..|+++|++|.++=..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5554444 446788888999999999999999887543
No 364
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=42.30 E-value=2.2e+02 Score=24.33 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=28.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
-|.+.+.++.|-....+.+|-..+.+|+.|.|+-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4667777899999999999988899999999954
No 365
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.28 E-value=1.2e+02 Score=25.81 Aligned_cols=97 Identities=19% Similarity=0.204 Sum_probs=62.5
Q ss_pred chhHhhh-ccCCceeecccCC---hhHHHHHHHhCCcEeeccCc-ccccchHHHHHHhhccceeeccccccccccCCCCc
Q 044012 354 APQVLIL-EHQAIGGFLTHCG---WNSILEGVSAGVPMVTWPVF-AEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPV 428 (490)
Q Consensus 354 ~p~~~ll-~~~~~~~~ItHGG---~~s~~eal~~GvP~l~~P~~-~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~ 428 (490)
-+|..|+ +||++..-+--.| ..|+.|--.+|.=.+.==-+ .=+..|++.. ++.|.=..+-.+ .
T Consensus 63 ~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVk-----------g 130 (176)
T COG3195 63 EERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVK-----------G 130 (176)
T ss_pred HHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeec-----------C
Confidence 3455544 4787711111111 34777777777544321000 1156799999 799999888887 7
Q ss_pred cchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 429 INRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 429 ~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
.|.++|.++..+-|+|+ +.+++++.+.++-+-..
T Consensus 131 ~~k~~Il~a~~~Rl~n~--~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 131 NTKDTILAAFERRLDND--REQEFATALAEIERIAL 164 (176)
T ss_pred CCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHH
Confidence 88999999999999844 44578887777765543
No 366
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=42.27 E-value=51 Score=29.77 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCC--ChHHHHHHHHHHHH
Q 044012 7 KLHVMFLPYIAPG--HMVPMVDMARLFAA 33 (490)
Q Consensus 7 ~~~Il~~~~~~~G--Hi~p~l~LA~~L~~ 33 (490)
|+||++..|.-+| ..||...++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 5788888877554 58999999999954
No 367
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=42.22 E-value=55 Score=30.45 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=41.4
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
+.--+++.-.|+.|......+.+...+++|..|.+++.....+.+.+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 345567777889999999999999999999999999998888777665
No 368
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=42.06 E-value=2.1e+02 Score=27.85 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=36.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNAR 48 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (490)
+...|.+...|+-|-..-.-.|+..|.++|+.|.++.......
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 3466788888999999999999999999999999999765443
No 369
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.96 E-value=36 Score=30.47 Aligned_cols=37 Identities=24% Similarity=0.182 Sum_probs=24.6
Q ss_pred CCCCCCcceEEEEcC--CCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 1 MVSENQKLHVMFLPY--IAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 1 m~~~~~~~~Il~~~~--~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
|+.+....+|++... ++.|| +||+++++.|++|.-..
T Consensus 1 ~e~~~~~k~VlItgcs~GGIG~-----ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 1 SELQSQPKKVLITGCSSGGIGY-----ALAKEFARNGYLVYATA 39 (289)
T ss_pred CCcccCCCeEEEeecCCcchhH-----HHHHHHHhCCeEEEEEc
Confidence 444444556666553 34454 78999999999986544
No 370
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=41.77 E-value=2.5e+02 Score=24.88 Aligned_cols=87 Identities=10% Similarity=0.171 Sum_probs=48.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCc-chhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTM-NARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
+||+++.++..+.+ .+|+++...- ..+|..+.+.. ....++.+.+ .++....+. ...+.
T Consensus 1 ~ki~VlaSG~GSNl---qaiida~~~~~~~a~i~~Visd~~~A~~lerA~~------~gIpt~~~~--------~k~~~- 62 (200)
T COG0299 1 KKIAVLASGNGSNL---QAIIDAIKGGKLDAEIVAVISDKADAYALERAAK------AGIPTVVLD--------RKEFP- 62 (200)
T ss_pred CeEEEEEeCCcccH---HHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHH------cCCCEEEec--------cccCC-
Confidence 57888887777665 4555665522 25666666544 3333333311 145444332 11111
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP 127 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~ 127 (490)
.-+.+..++.+.|++.++|+|+.-.+.-
T Consensus 63 ---------------~r~~~d~~l~~~l~~~~~dlvvLAGyMr 90 (200)
T COG0299 63 ---------------SREAFDRALVEALDEYGPDLVVLAGYMR 90 (200)
T ss_pred ---------------CHHHHHHHHHHHHHhcCCCEEEEcchHH
Confidence 1124566788888999999999876543
No 371
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=41.71 E-value=31 Score=28.33 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 19 GHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 19 GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
-.+.-.+=|+..|.++||+|+++.++.....++-.
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 34444677899999999999999998887777765
No 372
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=41.48 E-value=26 Score=32.42 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 22 VPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 22 ~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.-.-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 346689999999999999999854
No 373
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=41.16 E-value=36 Score=34.83 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=37.4
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
+++||++.-.++.+ .+=...|++.|.++|++|.++.++.-.+.+...
T Consensus 69 ~~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 69 ASKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 45788888766554 346889999999999999999998877777653
No 374
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=41.06 E-value=49 Score=31.18 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=32.1
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
|.+|+|+.=||-|-..-...||.+|+++|+.|.++=
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 457888888899999999999999999999988883
No 375
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=40.92 E-value=2.3e+02 Score=29.49 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=25.5
Q ss_pred HHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 108 IEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 108 l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
..+.+++.++|++|..... ..+|+++|||++..
T Consensus 390 ~~~~l~~~~~Dllig~s~~---~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 390 GLEAMEMLKPDIILTGKRP---GEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHHHhcCCCEEEecCcc---chhHhhcCCCEEEc
Confidence 3356677899999988653 36899999999764
No 376
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=40.23 E-value=47 Score=28.27 Aligned_cols=35 Identities=14% Similarity=0.013 Sum_probs=27.1
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
.+..||+++-.|..| ...++.|.+.|++|+++.++
T Consensus 11 l~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 356788888755433 77899999999999999644
No 377
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=40.20 E-value=49 Score=34.40 Aligned_cols=47 Identities=6% Similarity=0.034 Sum_probs=38.1
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
.--+++...++.|-..-...++.+.+.+|..|.+++.+...+.+.+.
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~ 319 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRN 319 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHH
Confidence 44566777778899999999999999999999999988776655443
No 378
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=40.00 E-value=29 Score=29.68 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=23.2
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
|+||.|+-.+..| ..+|+.|.++||+|+++-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 6789888876544 689999999999998775
No 379
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=39.61 E-value=3.4e+02 Score=26.28 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=57.1
Q ss_pred ceEEEEcCCCCC----ChHHHHHHHHHHHHCCCeEEEEeCCcchh--hhhhhhcccccCCCceEEEEeeCCCCcCCCCCC
Q 044012 8 LHVMFLPYIAPG----HMVPMVDMARLFAANGIQVTIILTTMNAR--RFQNAIDRDSRLGREISLRILRFPSQEAGLPEG 81 (490)
Q Consensus 8 ~~Il~~~~~~~G----Hi~p~l~LA~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (490)
..|++.|..+.. ...-+..|++.|.++|.+|.++..+...+ .++.... ..+ ...
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~------------~~~--------~~~ 241 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQ------------GCQ--------TPR 241 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHh------------hCC--------CCc
Confidence 456777654321 12347799999998899998887654222 2222200 000 000
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecc
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (490)
..++.+. .-..++..+++ +.|++|+. ..+...+|..+|+|.|.++..
T Consensus 242 ~~~l~g~--------------~sL~el~ali~--~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 242 VTSLAGK--------------LTLPQLAALID--HARLFIGV--DSVPMHMAAALGTPLVALFGP 288 (344)
T ss_pred ccccCCC--------------CCHHHHHHHHH--hCCEEEec--CCHHHHHHHHcCCCEEEEECC
Confidence 0000000 11234444555 57999966 347889999999999998653
No 380
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.50 E-value=45 Score=31.73 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=40.3
Q ss_pred hhhccCCceeecccCChhHHHHHHH----hCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhH
Q 044012 358 LILEHQAIGGFLTHCGWNSILEGVS----AGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGN 433 (490)
Q Consensus 358 ~ll~~~~~~~~ItHGG~~s~~eal~----~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~ 433 (490)
++...+++ +|+=||-||+..++. +++|++.+-. - . +|..- .++.++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~--------G----~--lGFl~--------------~~~~~~ 108 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINR--------G----N--LGFLT--------------DLDPDN 108 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEEC--------C----C--CCccc--------------ccCHHH
Confidence 34445777 999999999999985 3678887732 1 1 23322 466889
Q ss_pred HHHHHHHHhc
Q 044012 434 IKNAICVVMD 443 (490)
Q Consensus 434 l~~~i~~~l~ 443 (490)
+.+++.++++
T Consensus 109 ~~~~l~~i~~ 118 (292)
T PRK03378 109 ALQQLSDVLE 118 (292)
T ss_pred HHHHHHHHHc
Confidence 9999999987
No 381
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=39.37 E-value=1.6e+02 Score=29.66 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=25.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
+.+|++++.-+ .-...+++.|.+.|-+|..+.++..
T Consensus 273 ~Gkrv~i~gd~-----~~~~~l~~~L~elGm~~v~~~t~~~ 308 (407)
T TIGR01279 273 RGKKIFFFGDN-----LLELPLARFLKRCGMEVVECGTPYI 308 (407)
T ss_pred CCCEEEEECCc-----hHHHHHHHHHHHCCCEEEEecCCCC
Confidence 46788876533 4556778888888999988877554
No 382
>PRK05636 replicative DNA helicase; Provisional
Probab=38.90 E-value=1.3e+02 Score=31.27 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=33.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHH-HCCCeEEEEeCCcchhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFA-ANGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~-~rGh~Vt~~~~~~~~~~~~ 51 (490)
=|++...|+.|-..-.+.+|...+ +.|..|.|++.+...+.+.
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~ 310 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIV 310 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHH
Confidence 456677889999999999998876 4588999998877654443
No 383
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.85 E-value=51 Score=31.45 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=41.7
Q ss_pred HhhhccCCceeecccCChhHHHHHHH----hCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchh
Q 044012 357 VLILEHQAIGGFLTHCGWNSILEGVS----AGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRG 432 (490)
Q Consensus 357 ~~ll~~~~~~~~ItHGG~~s~~eal~----~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~ 432 (490)
.++...+++ +|+=||=||+..+.. .++|++.+-. -+ +|... .++.+
T Consensus 63 ~~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G~------lGFL~--------------~~~~~ 112 (296)
T PRK04539 63 TELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQ--------GH------LGFLT--------------QIPRE 112 (296)
T ss_pred hhcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEec--------CC------CeEee--------------ccCHH
Confidence 334445777 999999999999975 3789888831 11 24433 46788
Q ss_pred HHHHHHHHHhc
Q 044012 433 NIKNAICVVMD 443 (490)
Q Consensus 433 ~l~~~i~~~l~ 443 (490)
++.++|.++++
T Consensus 113 ~~~~~l~~i~~ 123 (296)
T PRK04539 113 YMTDKLLPVLE 123 (296)
T ss_pred HHHHHHHHHHc
Confidence 89999999998
No 384
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.83 E-value=39 Score=34.14 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEe
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFT 144 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~ 144 (490)
.++.+.+++.+||++|.... ...+|+++|||++.+.
T Consensus 359 ~e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 46677888889999998865 5568999999998763
No 385
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=38.72 E-value=51 Score=31.75 Aligned_cols=39 Identities=10% Similarity=-0.120 Sum_probs=30.1
Q ss_pred ceEEEEcCC---CCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 8 LHVMFLPYI---APGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 8 ~~Il~~~~~---~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
|||+|+.-| -.-+.....+|.++..+|||+|.++.+.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l 42 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDL 42 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhhe
Confidence 578888754 224555688999999999999999998543
No 386
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=38.71 E-value=4.1e+02 Score=26.48 Aligned_cols=66 Identities=26% Similarity=0.240 Sum_probs=39.2
Q ss_pred cCCceeecccCChhHHHHHHHhCCcEee--ccCcccc------cchHHHHHHhhccceeeccccccccccCCCCccchhH
Q 044012 362 HQAIGGFLTHCGWNSILEGVSAGVPMVT--WPVFAEQ------FNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGN 433 (490)
Q Consensus 362 ~~~~~~~ItHGG~~s~~eal~~GvP~l~--~P~~~DQ------~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~ 433 (490)
|-.+-++-|+ |..++..|+.+|.|+-. ++.+.|- -.|+-++++. ..... ..++.++
T Consensus 242 ~vkIIGVEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~----~~d~v-----------vvV~~~e 305 (457)
T KOG1250|consen 242 HVKIIGVETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQK----LVDRV-----------VVVEDDE 305 (457)
T ss_pred CCceEEEeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHh----cCceE-----------EEeccHH
Confidence 4444445665 67889999999988631 1222232 2234444311 11111 1578899
Q ss_pred HHHHHHHHhc
Q 044012 434 IKNAICVVMD 443 (490)
Q Consensus 434 l~~~i~~~l~ 443 (490)
+..+|.++++
T Consensus 306 i~aaI~~l~e 315 (457)
T KOG1250|consen 306 IAAAILRLFE 315 (457)
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 387
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=38.66 E-value=79 Score=27.15 Aligned_cols=49 Identities=18% Similarity=0.315 Sum_probs=34.2
Q ss_pred HHHHhhHHHHHHHhhcCCCcEEEEcCCCcc---------------hHHHHHHhCCCeEEEeccc
Q 044012 99 PALELLRPEIEKLFREQNPNCIVSDNLFPW---------------TVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 99 ~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~---------------~~~~A~~lgiP~v~~~~~~ 147 (490)
.....+...+.+++++.+||.++++..++. ...++...|+|+.-+++..
T Consensus 44 ~Rl~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~ 107 (164)
T PRK00039 44 ERLKQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQ 107 (164)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 334456688899999999999998875442 1235667788877765543
No 388
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=38.56 E-value=3.8e+02 Score=27.18 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=28.0
Q ss_pred eEEEEcCC-CCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYI-APGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~-~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+|++.... +.|-..-.+.|++.|.++|.+|..+-+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 56666655 668899999999999999999866554
No 389
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=38.52 E-value=2.5e+02 Score=27.67 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=28.4
Q ss_pred HHHHHhhcCCCcEEEEcCCCc---chHHHHHHhCCCeEEEeccc
Q 044012 107 EIEKLFREQNPNCIVSDNLFP---WTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~---~~~~~A~~lgiP~v~~~~~~ 147 (490)
+..+.+++.++|+||.=.--. .+..+|..+++|+|.+-|+.
T Consensus 75 ~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 75 RLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred HHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 455556667899999554222 46667777799999986653
No 390
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=38.41 E-value=69 Score=31.08 Aligned_cols=42 Identities=21% Similarity=0.414 Sum_probs=31.2
Q ss_pred HhhHHHHHHHhhcCCCcEEEEcCCCcc----------hHHHHHHhCCCeEEE
Q 044012 102 ELLRPEIEKLFREQNPNCIVSDNLFPW----------TVSIAEELGIPRLAF 143 (490)
Q Consensus 102 ~~~~~~l~~~l~~~~pD~VI~D~~~~~----------~~~~A~~lgiP~v~~ 143 (490)
+.....+.+.+++.+||+||+-+-+.+ +..+.+.++||.|.-
T Consensus 66 eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 66 EEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 345678888899999999999884432 123567899998864
No 391
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=38.40 E-value=44 Score=34.72 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEe
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFT 144 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~ 144 (490)
.++.+.+++.+||+||.+. ....+|+.+|||++.++
T Consensus 364 ~ei~~~I~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 4556677778999999985 34556899999998874
No 392
>PRK07773 replicative DNA helicase; Validated
Probab=38.36 E-value=2e+02 Score=32.28 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=35.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTMNARRFQN 52 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~~ 52 (490)
=|++..-|+.|-..-.+.+|...+.+ |..|.|++-+...+.+..
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 36777788999999999999998755 889999998777655444
No 393
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=38.34 E-value=31 Score=35.25 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=37.9
Q ss_pred HHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhcc
Q 044012 376 SILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDN 444 (490)
Q Consensus 376 s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n 444 (490)
++.||+++|.|+|.. ++..-+.-+ +..--|...+.. .-....++.++-++.+|
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp~-----------~e~~~~~a~~~~kl~~~ 433 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDPG-----------QEAVAELADALLKLRRD 433 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCCc-----------hHHHHHHHHHHHHHhcC
Confidence 688999999999987 444555555 354557776543 33444799999999993
No 394
>PLN02240 UDP-glucose 4-epimerase
Probab=38.34 E-value=53 Score=31.95 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=24.3
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
++++|++. |+.|.+ -..|++.|.++||+|+.+..
T Consensus 4 ~~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 34566654 555655 35678999999999998863
No 395
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.28 E-value=34 Score=32.84 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=40.3
Q ss_pred hhccCCceeecccCChhHHHHHHHh----CCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHH
Q 044012 359 ILEHQAIGGFLTHCGWNSILEGVSA----GVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNI 434 (490)
Q Consensus 359 ll~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l 434 (490)
+...+++ +|+=||=||+..+... ++|++.+-. - .+|... +.+.+++
T Consensus 65 ~~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~--------G------~lGFLt--------------~~~~~~~ 114 (305)
T PRK02649 65 FDSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT--------G------HLGFLT--------------EAYLNQL 114 (305)
T ss_pred cccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------C------CCcccc--------------cCCHHHH
Confidence 3345677 9999999999999775 789888831 1 123222 4677899
Q ss_pred HHHHHHHhc
Q 044012 435 KNAICVVMD 443 (490)
Q Consensus 435 ~~~i~~~l~ 443 (490)
.++|.++++
T Consensus 115 ~~~l~~l~~ 123 (305)
T PRK02649 115 DEAIDQVLA 123 (305)
T ss_pred HHHHHHHHc
Confidence 999999987
No 396
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=38.15 E-value=78 Score=25.22 Aligned_cols=43 Identities=14% Similarity=0.019 Sum_probs=34.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 10 VMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 10 Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
++....++..|.....-++..|.++|++|.++......+.+..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~ 44 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVE 44 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHH
Confidence 5666778899999999999999999999999976554444333
No 397
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=37.76 E-value=2.9e+02 Score=24.44 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=61.3
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch---hhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA---RRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGC 82 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (490)
++-.|.+++..+.|-....+.+|-..+.+|+.|.++-.=... ...... . ...++.+....... ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l-~----~l~~v~~~~~g~~~-----~~-- 88 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLL-E----FGGGVEFHVMGTGF-----TW-- 88 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHH-h----cCCCcEEEECCCCC-----cc--
Confidence 345788888899999999999999999999999998752211 111111 0 01245555543110 00
Q ss_pred cCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC
Q 044012 83 ENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF 126 (490)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~ 126 (490)
.. .... .-...+........+.+.+.++|+||.|-..
T Consensus 89 ---~~-~~~~---e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~ 125 (191)
T PRK05986 89 ---ET-QDRE---RDIAAAREGWEEAKRMLADESYDLVVLDELT 125 (191)
T ss_pred ---cC-CCcH---HHHHHHHHHHHHHHHHHhCCCCCEEEEehhh
Confidence 00 0001 1222333455666777778899999999654
No 398
>PLN02470 acetolactate synthase
Probab=37.75 E-value=1.2e+02 Score=32.14 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=52.4
Q ss_pred EeCCcccCC--HHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccc-hh-----Hh
Q 044012 287 CFGSLTRFS--KEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWA-PQ-----VL 358 (490)
Q Consensus 287 s~GS~~~~~--~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~-p~-----~~ 358 (490)
+|||....+ ...-+.+++.|++.|.+.|+.+.+. . . + .+-..+.+ .++++.+.-- .+ .+
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~---~----~---~--~l~dal~~-~~~i~~i~~rhE~~A~~~Ad 68 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGG---A----S---M--EIHQALTR-SNCIRNVLCRHEQGEVFAAE 68 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCc---c----c---H--HHHHHHhc-cCCceEEEeccHHHHHHHHH
Confidence 466655422 2335678899999999999988766 1 1 1 11111110 2233322111 11 11
Q ss_pred hhc--cCCceeecccCChh------HHHHHHHhCCcEeecc
Q 044012 359 ILE--HQAIGGFLTHCGWN------SILEGVSAGVPMVTWP 391 (490)
Q Consensus 359 ll~--~~~~~~~ItHGG~~------s~~eal~~GvP~l~~P 391 (490)
-+. .-...++++|.|-| .+.+|...++|+|++.
T Consensus 69 gyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 69 GYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 111 12344588888855 8899999999999995
No 399
>PRK05114 hypothetical protein; Provisional
Probab=37.58 E-value=93 Score=21.23 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q 044012 451 KMRKKANHLKELAKKAVEEGGSSCNDLKALIEDIRLYK 488 (490)
Q Consensus 451 ~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 488 (490)
.=.+.+.++.+.+. +|-||..++.-...+|++..
T Consensus 12 eQQ~AVErIq~LMa----qGmSsgEAI~~VA~eiRe~~ 45 (59)
T PRK05114 12 QQQKAVERIQELMA----QGMSSGEAIALVAEELRANH 45 (59)
T ss_pred HHHHHHHHHHHHHH----ccccHHHHHHHHHHHHHHHH
Confidence 33445555555555 67777777777777777654
No 400
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=37.49 E-value=1.1e+02 Score=31.27 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=23.2
Q ss_pred CCCcEEEEcCCCc--chHHHHHHhCCCeEEEecccH
Q 044012 115 QNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSGF 148 (490)
Q Consensus 115 ~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 148 (490)
.+||+|+..+-.. .|.++++++|||...+.++-.
T Consensus 400 ~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsLe 435 (550)
T PF00862_consen 400 GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSLE 435 (550)
T ss_dssp S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-H
T ss_pred CCCcEEEeccCcchHHHHHHHhhcCCceehhhhccc
Confidence 5899999876333 688899999999998876643
No 401
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=37.47 E-value=45 Score=33.61 Aligned_cols=33 Identities=18% Similarity=0.027 Sum_probs=25.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+++||.|+-.|-.| +.+|..|+++||+|+.+-.
T Consensus 2 ~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 2 SFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 35789888655444 5789999999999988864
No 402
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.44 E-value=54 Score=30.86 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=40.2
Q ss_pred hHhhhccCCceeecccCChhHHHHHHH----hCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccch
Q 044012 356 QVLILEHQAIGGFLTHCGWNSILEGVS----AGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINR 431 (490)
Q Consensus 356 ~~~ll~~~~~~~~ItHGG~~s~~eal~----~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~ 431 (490)
+.++...+++ +|+=||-||+..+.. .++|++.+-. - .+|... ..+.
T Consensus 36 ~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~--------G------~lGFL~--------------~~~~ 85 (272)
T PRK02231 36 LEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINR--------G------NLGFLT--------------DIDP 85 (272)
T ss_pred hHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC--------C------CCcccc--------------cCCH
Confidence 3445556777 999999999998765 3689888731 1 134333 4567
Q ss_pred hHHHHHHHHHhc
Q 044012 432 GNIKNAICVVMD 443 (490)
Q Consensus 432 ~~l~~~i~~~l~ 443 (490)
+++.+++.++++
T Consensus 86 ~~~~~~l~~~~~ 97 (272)
T PRK02231 86 KNAYEQLEACLE 97 (272)
T ss_pred HHHHHHHHHHHh
Confidence 778888888776
No 403
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=37.41 E-value=84 Score=28.39 Aligned_cols=47 Identities=11% Similarity=-0.020 Sum_probs=35.7
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~~~ 53 (490)
.--+++...|+.|-..-.++++.+-+++ |..|.+++.+...+.+.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~ 66 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIEN 66 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHH
Confidence 4456777788999999999988888888 9999999988777666554
No 404
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=37.27 E-value=65 Score=29.71 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=29.9
Q ss_pred cceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|..|++.. -||-|-..-...||..|+++|++|..+=-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 34555555 55889999999999999999999988754
No 405
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.17 E-value=49 Score=31.71 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=41.0
Q ss_pred hhccCCceeecccCChhHHHHHHHh----CCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHH
Q 044012 359 ILEHQAIGGFLTHCGWNSILEGVSA----GVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNI 434 (490)
Q Consensus 359 ll~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l 434 (490)
+...+++ +|+=||-||+..+... ++|++.+.. - .+|... +...+++
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~--------G------~lGFL~--------------~~~~~~~ 118 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNL--------G------HVGFLA--------------EAEAEDL 118 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEec--------C------CCceec--------------cCCHHHH
Confidence 3445777 9999999999998764 889998842 1 124433 4667889
Q ss_pred HHHHHHHhc
Q 044012 435 KNAICVVMD 443 (490)
Q Consensus 435 ~~~i~~~l~ 443 (490)
.++|.++++
T Consensus 119 ~~~l~~i~~ 127 (306)
T PRK03372 119 DEAVERVVD 127 (306)
T ss_pred HHHHHHHHc
Confidence 999999998
No 406
>PRK04940 hypothetical protein; Provisional
Probab=37.16 E-value=79 Score=27.61 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCc-chHHHHHHhCCCeEEEeccc
Q 044012 116 NPNCIVSDNLFP-WTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 116 ~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~~~ 147 (490)
+++++|...+-. +|..+|+++|+|.|.+.|.-
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 578888887555 89999999999999987663
No 407
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=37.00 E-value=34 Score=31.25 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 044012 25 VDMARLFAANGIQVTIIL 42 (490)
Q Consensus 25 l~LA~~L~~rGh~Vt~~~ 42 (490)
.+||++|+++|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 488999999999999875
No 408
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=36.84 E-value=85 Score=25.10 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=32.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
||++..-++.|-......|++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 5788889999999999999999999999998887654
No 409
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=36.81 E-value=74 Score=28.88 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=30.7
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCe-EEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQ-VTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~-Vt~~~~ 43 (490)
|.=|+|+..|..|--.....|.+.|+++||. ++.+..
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 4568888899999999999999999999976 444443
No 410
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.74 E-value=1.7e+02 Score=29.56 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=33.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHH--HCCCeEEEEeCCcchh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFA--ANGIQVTIILTTMNAR 48 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~--~rGh~Vt~~~~~~~~~ 48 (490)
..|+|+..+|-|-..-...||..++ ..|+.|.+++...++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 3566666678899999999999998 5689999999887653
No 411
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=36.66 E-value=3.1e+02 Score=24.41 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=32.5
Q ss_pred CcceEEEEcCC-CCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 6 QKLHVMFLPYI-APGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 6 ~~~~Il~~~~~-~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+|.++-|+..| ..|-..-++.-++....+|-.|.+.++.-
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 35566666655 66899999999999999999999999843
No 412
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=36.57 E-value=2e+02 Score=29.25 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=25.2
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|+|||++-.+. + ...+++++++.|++|+.+.+.
T Consensus 2 ~k~iLi~g~g~---~--a~~i~~aa~~~G~~vv~~~~~ 34 (451)
T PRK08591 2 FDKILIANRGE---I--ALRIIRACKELGIKTVAVHST 34 (451)
T ss_pred cceEEEECCCH---H--HHHHHHHHHHcCCeEEEEcCh
Confidence 56888884332 2 478888999999999998764
No 413
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=36.46 E-value=52 Score=34.29 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEe
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFT 144 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~ 144 (490)
.++.+.+++.+||+||.+. ....+|+.+|||++.++
T Consensus 352 ~el~~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 352 LEVEDAIAEAAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 3566677778999999875 35668899999998874
No 414
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=36.28 E-value=3.1e+02 Score=24.43 Aligned_cols=154 Identities=15% Similarity=0.167 Sum_probs=77.4
Q ss_pred ccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeecc
Q 044012 274 WLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGW 353 (490)
Q Consensus 274 ~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~ 353 (490)
|++.. .+.+++|..|..+ ..-+..|.+.|.++.++-... .+.+.+... ..++....-
T Consensus 4 ~l~l~-gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~-------------~~~l~~l~~--~~~i~~~~~ 60 (205)
T TIGR01470 4 FANLE-GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL-------------ESELTLLAE--QGGITWLAR 60 (205)
T ss_pred EEEcC-CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC-------------CHHHHHHHH--cCCEEEEeC
Confidence 44444 4568888777543 334455667788876554322 112222111 224544332
Q ss_pred chhHhhhccCCceeecccCChhHHHH-----HHHhCCcEeec--cCcccccchHHHHHHhhccceeeccccccccccCCC
Q 044012 354 APQVLILEHQAIGGFLTHCGWNSILE-----GVSAGVPMVTW--PVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDS 426 (490)
Q Consensus 354 ~p~~~ll~~~~~~~~ItHGG~~s~~e-----al~~GvP~l~~--P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~ 426 (490)
-.+...+..+++ +|..-|...+.+ |-..|+|+-++ |-..| +..-..+ ++-++-+.+... | .+
T Consensus 61 ~~~~~dl~~~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~-----G--~s 129 (205)
T TIGR01470 61 CFDADILEGAFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSG-----G--AA 129 (205)
T ss_pred CCCHHHhCCcEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECC-----C--CC
Confidence 223445667776 777777664433 44568888433 22222 2233333 232333333322 0 01
Q ss_pred CccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Q 044012 427 PVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKK 465 (490)
Q Consensus 427 ~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~ 465 (490)
+. -+..|++.|.+++. .+ ...+-+.+.++++++++
T Consensus 130 P~-la~~lr~~ie~~l~--~~-~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 130 PV-LARLLRERIETLLP--PS-LGDLATLAATWRDAVKK 164 (205)
T ss_pred cH-HHHHHHHHHHHhcc--hh-HHHHHHHHHHHHHHHHh
Confidence 23 33568888888885 22 24566666666666663
No 415
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.28 E-value=3.4e+02 Score=24.91 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCcc---hHHHHHHhCCCeEEE
Q 044012 116 NPNCIVSDNLFPW---TVSIAEELGIPRLAF 143 (490)
Q Consensus 116 ~pD~VI~D~~~~~---~~~~A~~lgiP~v~~ 143 (490)
+-++.+.|..+.+ +..+|...|||++.=
T Consensus 149 ~r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 149 ERGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred HCCeEEEcccccccchhhhhHhhcCCceeee
Confidence 5799999998773 677899999998863
No 416
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=36.08 E-value=90 Score=32.83 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=48.5
Q ss_pred hhHhhhccCCceeecccCC-hh-HHHHHHHhCCcEeeccCcc-----cccchHHHHHHhhccceeeccccccccccCCCC
Q 044012 355 PQVLILEHQAIGGFLTHCG-WN-SILEGVSAGVPMVTWPVFA-----EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSP 427 (490)
Q Consensus 355 p~~~ll~~~~~~~~ItHGG-~~-s~~eal~~GvP~l~~P~~~-----DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~ 427 (490)
++.+++..|+++.|-+-=- || |=+||++.|||.|.-=+.+ .+... .. +..|+-+.-.+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~--~~~GV~VvdR~------------ 526 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE-DP--EEYGVYVVDRR------------ 526 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS--HH--GGGTEEEE-SS------------
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc-cC--cCCcEEEEeCC------------
Confidence 5778888888866655211 33 8899999999999887643 22222 22 24566544433
Q ss_pred ccchhHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHH
Q 044012 428 VINRGNIKNAICVVMD----NDDQEAVKMRKKANHLKEL 462 (490)
Q Consensus 428 ~~t~~~l~~~i~~~l~----n~~~~~~~~~~~a~~l~~~ 462 (490)
.-+.++..+.|.+.|. -+..+-...|.+|.++++.
T Consensus 527 ~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 527 DKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp SS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4566666666666542 0111113556666666554
No 417
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=36.03 E-value=2.3e+02 Score=27.87 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=22.8
Q ss_pred ceEEEEcCCCC----CChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 8 LHVMFLPYIAP----GHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 8 ~~Il~~~~~~~----GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
..|+-.+..+. +.+...+.+...++++|..+.+++.+.
T Consensus 168 ~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~Es 209 (363)
T PRK05772 168 DTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPET 209 (363)
T ss_pred CEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCC
Confidence 34555553321 333445555666777899888888753
No 418
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=35.94 E-value=67 Score=28.53 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=29.2
Q ss_pred cceEEEEcCCCCCChHHHHH-HHHHHHH-CCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVD-MARLFAA-NGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~-LA~~L~~-rGh~Vt~~~~ 43 (490)
||||+++-....||..-+.. +++.+.+ .|++|.++.-
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 46898888888899999765 5666666 8999988775
No 419
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=35.93 E-value=60 Score=30.45 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+.|.|..-||-|-..-...||.+|+++|++|.++=
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID 36 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVG 36 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEe
Confidence 46777777788999999999999999999999983
No 420
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=35.93 E-value=3.4e+02 Score=27.76 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=27.2
Q ss_pred HHHHHHhhc--CCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFRE--QNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~--~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.++.+.+++ .+||++|... ....+|+.+|||++.+
T Consensus 369 ~e~~~~i~~~~~~~dliig~s---~~~~~A~~~gip~~~~ 405 (454)
T cd01973 369 WELEKRIKNKGLELDLILGHS---KGRYIAIDNNIPMVRV 405 (454)
T ss_pred HHHHHHHHhcCCCCCEEEECC---ccHHHHHHcCCCEEEe
Confidence 355666765 4699999875 4578999999999876
No 421
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=35.82 E-value=2.3e+02 Score=27.69 Aligned_cols=118 Identities=18% Similarity=0.138 Sum_probs=66.2
Q ss_pred cceEEEEcCCCC--CChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 7 KLHVMFLPYIAP--GHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 7 ~~~Il~~~~~~~--GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
++||++++.++. |==+-..++.+.+..+|.+|.-+-. .+...++.. +..+..-....-...+...
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~-Gy~GL~~~~------------i~~l~~~~v~~~~~~GGT~ 68 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYN-GYLGLLEGD------------IKPLTREDVDDLINRGGTF 68 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEec-chhhhcCCc------------ceeccccchhHHHhcCCeE
Confidence 579999998855 5555688999999999999987774 344444432 1111100000000111100
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEE---cCCCcchHHHHHHhCCCeEEE
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVS---DNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~---D~~~~~~~~~A~~lgiP~v~~ 143 (490)
+..... ..+. ....++...+-+++.+.|.+|+ |.-+..+..+++..++|+|-+
T Consensus 69 lgssR~-~~~~-----~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 69 LGSARF-PEFK-----TEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred EeeCCC-CCcc-----cHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 000000 0000 0122335566677788888773 544457899999999998864
No 422
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.74 E-value=2.5e+02 Score=28.03 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=35.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHH----CCCeEEEEeCCcchhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAA----NGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~----rGh~Vt~~~~~~~~~~~~~ 52 (490)
..|+|+...|.|-......||..+.. +|+.|.+++...++.....
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e 223 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK 223 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH
Confidence 45666666688999999999998874 5899999999887644333
No 423
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=35.74 E-value=1.7e+02 Score=27.76 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=19.7
Q ss_pred HHHHHHHHHCCCeEEEEeCCcchh
Q 044012 25 VDMARLFAANGIQVTIILTTMNAR 48 (490)
Q Consensus 25 l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (490)
.++|..++++|++|.++.......
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 468889999999999999866543
No 424
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=35.59 E-value=48 Score=31.96 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=29.5
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
++||.++-.+++| .+||+.|++.||+|++.....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 5789999989888 589999999999999998643
No 425
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=35.58 E-value=1.3e+02 Score=23.00 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=28.8
Q ss_pred ccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 394 AEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 394 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
.|+..|..-+ |..|.+... .+++.++...+-+++.
T Consensus 20 ~~~~gWr~LA-e~lg~~~~f--------------r~S~~el~~cslkvl~ 54 (97)
T cd08783 20 ADGKGWRKLA-ELAGSRGRF--------------RLSCLDLEQCSLKVLE 54 (97)
T ss_pred CccCCHHHHH-HHHccCCcc--------------ccCHHHHHHHHHHHhc
Confidence 4667788888 788888733 6899999999999998
No 426
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=35.53 E-value=55 Score=31.08 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEee
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILR 70 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (490)
-+..+|+++-++++||.. |.-|+..|.+|++..-+...+...+. .++|.+..+.
T Consensus 16 LkgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA~-------~dGf~V~~v~ 69 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKAK-------EDGFKVYTVE 69 (338)
T ss_pred hcCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHHH-------hcCCEeecHH
Confidence 367899999999999965 56788889999999987766544443 2367766653
No 427
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=35.15 E-value=1e+02 Score=26.87 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=28.6
Q ss_pred HHHHHhhcCCCcEEEEcC--CCcchHHHHHHhCCCeEEE
Q 044012 107 EIEKLFREQNPNCIVSDN--LFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~--~~~~~~~~A~~lgiP~v~~ 143 (490)
.+.+.+++.++|.|++=. -+..+..+|..+|+|+|.+
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 566666667899999543 3336888999999999986
No 428
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.12 E-value=3e+02 Score=25.88 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=35.5
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
.-+++|+...+.|-..-+..|+..+..+|+.|.+++...++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 36888888889999998999999999999999999987664
No 429
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=34.77 E-value=2.5e+02 Score=27.25 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=14.9
Q ss_pred hHHHHHHhCCCeEEEecc
Q 044012 129 TVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 129 ~~~~A~~lgiP~v~~~~~ 146 (490)
...+|+.+|||+++..+.
T Consensus 241 lAl~Ak~~~VPfyV~a~~ 258 (329)
T PRK06371 241 KAVLAKVNGIPFYVAAPG 258 (329)
T ss_pred HHHHHHHcCCCEEEeccc
Confidence 567899999999998654
No 430
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=34.74 E-value=1.5e+02 Score=25.98 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHH-CCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCc-----CCCCCCccCCCC-CCCh
Q 044012 19 GHMVPMVDMARLFAA-NGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQE-----AGLPEGCENLMS-TSTP 91 (490)
Q Consensus 19 GHi~p~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~-~~~~ 91 (490)
-.+.-+..+++.+.+ .|.++.+.++.+.++.++.+ .|-+..+.....+ ...|....-... .+.
T Consensus 39 ~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gA---------DfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT- 108 (183)
T PF02056_consen 39 ERLEIVERLARRMVEEAGADLKVEATTDRREALEGA---------DFVINQIRVGGLEAREIDEEIPLKYGIVGTIQET- 108 (183)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTE---------SEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSS-
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCC---------CEEEEEeeecchHHHHHHHHHHHHhCCccccccc-
Confidence 344556678888875 48899988888877777755 5555555422111 001111100000 111
Q ss_pred hhHhhHHHHHH--hhHHHHHHHhhcCCCcEEEEcCCCcc---hHHHHHHhC-CCeEEEecccHHH
Q 044012 92 ETTKKLFPALE--LLRPEIEKLFREQNPNCIVSDNLFPW---TVSIAEELG-IPRLAFTGSGFFN 150 (490)
Q Consensus 92 ~~~~~~~~~~~--~~~~~l~~~l~~~~pD~VI~D~~~~~---~~~~A~~lg-iP~v~~~~~~~~~ 150 (490)
.....+..+++ ....++-+.+++..||.-+..+-.+. ...+.+.++ ++.|-++..+...
T Consensus 109 ~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~ 173 (183)
T PF02056_consen 109 VGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGT 173 (183)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHH
T ss_pred cCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHH
Confidence 11112222222 22344555556678999998876664 334555666 9999998876443
No 431
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=34.58 E-value=59 Score=32.95 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEec
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~ 145 (490)
.++.+.+++.+||+||.+.. ...+|+.+|+|++.++.
T Consensus 360 ~e~~~~i~~~~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHHhhCCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 44566677789999999863 44568999999988643
No 432
>PLN02735 carbamoyl-phosphate synthase
Probab=34.58 E-value=2.6e+02 Score=32.33 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=29.7
Q ss_pred cceEEEEcCCC--CCCh----HHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIA--PGHM----VPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~--~GHi----~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
.+||+++..+. .|+. +.-..++++|.+.|++|..+-+.
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~n 66 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSN 66 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCC
Confidence 47899988775 3533 45788999999999999988764
No 433
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=34.44 E-value=56 Score=34.01 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=28.2
Q ss_pred HHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEec
Q 044012 107 EIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~ 145 (490)
++.+.+++.+||+||.+. ....+|+.+|||++.++.
T Consensus 355 ei~~~i~~~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhcCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 556667778999999885 456678999999988743
No 434
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=34.44 E-value=60 Score=28.49 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|||.++- .||+ -+.+|..|++.||+|+.+=..
T Consensus 1 M~I~ViG---lGyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIG---LGYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEEC---CCcc--hHHHHHHHHhCCCEEEEEeCC
Confidence 6777774 4444 378899999999999988653
No 435
>PLN00016 RNA-binding protein; Provisional
Probab=34.32 E-value=49 Score=32.77 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=25.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+++|+++..-+.|+-.--..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 46788773222233333457789999999999998853
No 436
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=34.22 E-value=86 Score=27.35 Aligned_cols=46 Identities=9% Similarity=0.203 Sum_probs=36.2
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
++||++--.|+.|-++- ++|.+.|.+.|+++.++.++..+..+...
T Consensus 2 ~~riivgisGASG~iyg-vrlLe~L~~~~~e~hlviS~~a~~~~~~E 47 (191)
T COG0163 2 MKRIIVGISGASGAIYG-VRLLEVLRELGVETHLVISKAAKKTLKYE 47 (191)
T ss_pred CcEEEEEEeccccHHHH-HHHHHHHHhcCceEEEEEcHHHHHHHHHH
Confidence 56888888888886664 67889999999999999997666655544
No 437
>PRK13604 luxD acyl transferase; Provisional
Probab=34.14 E-value=85 Score=30.11 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=29.7
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
++.+++++.++..++-..+..+|+.|+++|+.|.-+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 3456777888877777779999999999999987653
No 438
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=34.03 E-value=2.9e+02 Score=25.67 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=36.6
Q ss_pred CCcceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhh
Q 044012 5 NQKLHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILTTMNARR 49 (490)
Q Consensus 5 ~~~~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~ 49 (490)
++..|..|+. -|+.|-..-...||-.|+.-+|.|.++++......
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNl 61 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNL 61 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccch
Confidence 4567777776 45779999999999999999999999998665443
No 439
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=34.01 E-value=51 Score=31.38 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 24 MVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 24 ~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
...||++|...|-+|+++|.+...+.+++.
T Consensus 65 A~aLa~aL~~lG~~~~ivtd~~~~~~~~~~ 94 (291)
T PF14336_consen 65 AAALARALQALGKEVVIVTDERCAPVVKAA 94 (291)
T ss_pred HHHHHHHHHHcCCeEEEEECHHHHHHHHHH
Confidence 678999999999999999999988888886
No 440
>PRK06756 flavodoxin; Provisional
Probab=33.97 E-value=77 Score=26.41 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=28.7
Q ss_pred cceEEEEcCCCCCChHHH-HHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPM-VDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~-l~LA~~L~~rGh~Vt~~~~ 43 (490)
||||+++=....||.--+ ..|++.|.++|++|.++-.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 468877777788998885 4678889889999877643
No 441
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.71 E-value=3.6e+02 Score=25.63 Aligned_cols=101 Identities=11% Similarity=0.138 Sum_probs=54.7
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCc--chhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTM--NARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
.+++||+++..+..+ .+.+|.++..+. ..+|.++.+.. ..+..++. ++.+..++.. +
T Consensus 91 ~~~~kiavl~Sg~g~---nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~---------gIp~~~~~~~------~- 151 (289)
T PRK13010 91 GQRPKVVIMVSKFDH---CLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQH---------DIPFHHLPVT------P- 151 (289)
T ss_pred CCCeEEEEEEeCCCc---cHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHc---------CCCEEEeCCC------c-
Confidence 356899998876543 345566666544 35777666533 23333333 5666666411 0
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEE
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLA 142 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~ 142 (490)
.+. ......+.++|++.++|+||.-.+.- -...+-+.+.-..+-
T Consensus 152 --~~~----------------~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiN 196 (289)
T PRK13010 152 --DTK----------------AQQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAIN 196 (289)
T ss_pred --ccc----------------cchHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCcee
Confidence 000 01234667778888999999765433 233333333333343
No 442
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=33.67 E-value=1.7e+02 Score=27.97 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.3
Q ss_pred hHHHHHHhCCCeEEEeccc
Q 044012 129 TVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 129 ~~~~A~~lgiP~v~~~~~~ 147 (490)
...+|+.+++|+++.+.+.
T Consensus 223 lA~~Ak~~~vPv~V~a~s~ 241 (303)
T TIGR00524 223 LAVLAKEFRIPFFVAAPLS 241 (303)
T ss_pred HHHHHHHhCCCEEEecccc
Confidence 4678999999999986653
No 443
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.60 E-value=44 Score=29.00 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=0.0
Q ss_pred ccCCceeecccCChhHHHHHHHhCCcEeeccC-----------------------cccccchHHHHHHhhccceeecccc
Q 044012 361 EHQAIGGFLTHCGWNSILEGVSAGVPMVTWPV-----------------------FAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 361 ~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~-----------------------~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
..+++ +|++||...+..... ++|+|-+|. +.....+...+.+-+|+-+....-
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~- 108 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPY- 108 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEE-
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEE-
Q ss_pred ccccccCCCCccchhHHHHHHHHH
Q 044012 418 WKIWATQDSPVINRGNIKNAICVV 441 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~ 441 (490)
-+.+++...|.++
T Consensus 109 -----------~~~~e~~~~i~~~ 121 (176)
T PF06506_consen 109 -----------DSEEEIEAAIKQA 121 (176)
T ss_dssp -----------SSHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHH
No 444
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=33.50 E-value=46 Score=32.07 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=26.1
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
||||+|+-.|..| ..+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 5789998766555 46788899999999988753
No 445
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=33.49 E-value=1.1e+02 Score=26.98 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=29.0
Q ss_pred hHHHHHHHhhcCCCcEEEEcC--CCcchHHHHHHhCCCeEEEe
Q 044012 104 LRPEIEKLFREQNPNCIVSDN--LFPWTVSIAEELGIPRLAFT 144 (490)
Q Consensus 104 ~~~~l~~~l~~~~pD~VI~D~--~~~~~~~~A~~lgiP~v~~~ 144 (490)
....+.+.+++.++|+|++=. -.+.|..+|..+|+|++.+.
T Consensus 38 i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 38 IGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 344555555667899999543 22368889999999999863
No 446
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=33.06 E-value=3.1e+02 Score=25.11 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=20.5
Q ss_pred hhcCCCcEEEEcCCCc----chHHHHHHhCCCeEEEe
Q 044012 112 FREQNPNCIVSDNLFP----WTVSIAEELGIPRLAFT 144 (490)
Q Consensus 112 l~~~~pD~VI~D~~~~----~~~~~A~~lgiP~v~~~ 144 (490)
+.+.++|.||...... .....+...|+|+|.+.
T Consensus 53 l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (275)
T cd06320 53 MINKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVN 89 (275)
T ss_pred HHHhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEEC
Confidence 3345789888765422 22345566799998763
No 447
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=32.97 E-value=79 Score=29.82 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=18.5
Q ss_pred CCcEEEEcC------CCcchHHHHHHhCCCeEEEecc
Q 044012 116 NPNCIVSDN------LFPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 116 ~pD~VI~D~------~~~~~~~~A~~lgiP~v~~~~~ 146 (490)
+.|.|+.|. .+...+.+|+.+++|+++++.+
T Consensus 183 Gad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~ 219 (282)
T PF01008_consen 183 GADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAES 219 (282)
T ss_dssp E-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--G
T ss_pred eeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEccc
Confidence 445555554 2224577999999999998554
No 448
>PRK12828 short chain dehydrogenase; Provisional
Probab=32.87 E-value=89 Score=28.06 Aligned_cols=39 Identities=26% Similarity=0.141 Sum_probs=26.1
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.+..+.++|++ + ++.|.+ -..+++.|.++|++|+++..
T Consensus 1 ~~~~~~~k~vlI-t-Gatg~i--G~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 1 MEHSLQGKVVAI-T-GGFGGL--GRATAAWLAARGARVALIGR 39 (239)
T ss_pred CCCCCCCCEEEE-E-CCCCcH--hHHHHHHHHHCCCeEEEEeC
Confidence 444444445555 3 444655 37888999999999887775
No 449
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.71 E-value=1e+02 Score=27.75 Aligned_cols=37 Identities=14% Similarity=-0.011 Sum_probs=25.2
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+++++|++. |+.|++ -..|++.|.++||+|+.++...
T Consensus 4 ~~~~~vlIt--Gasg~i--G~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 4 LMGRVALVT--GAARGL--GRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CCCCEEEEe--CCCchH--HHHHHHHHHHCCCeEEEEeCCC
Confidence 345566663 445554 4678899999999997766543
No 450
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=32.71 E-value=1e+02 Score=26.55 Aligned_cols=30 Identities=7% Similarity=0.195 Sum_probs=22.3
Q ss_pred cCCceeecccCCh------hHHHHHHHhCCcEeeccCc
Q 044012 362 HQAIGGFLTHCGW------NSILEGVSAGVPMVTWPVF 393 (490)
Q Consensus 362 ~~~~~~~ItHGG~------~s~~eal~~GvP~l~~P~~ 393 (490)
++.+ +++|.|. +++.+|...++|+|++.-.
T Consensus 64 ~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 64 RPGV--VIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp SEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred cceE--EEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 3444 8888874 4788999999999998753
No 451
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=32.69 E-value=1.1e+02 Score=26.93 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCC--ChHHHHHHHHHHHHCC
Q 044012 8 LHVMFLPYIAPG--HMVPMVDMARLFAANG 35 (490)
Q Consensus 8 ~~Il~~~~~~~G--Hi~p~l~LA~~L~~rG 35 (490)
|+|++..|+-++ ..||...++++|.+..
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~~~ 30 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPKLI 30 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhccccc
Confidence 578777766443 5789999999996643
No 452
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=32.36 E-value=48 Score=31.46 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCCh
Q 044012 295 SKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGW 374 (490)
Q Consensus 295 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~ 374 (490)
+.+....+.+|+.....+.||.+.+. ..-.++.+++++..+-+++.. ||-....
T Consensus 47 ~~~Ra~dL~~a~~d~~i~aI~~~rGG------------------------yg~~rlL~~ld~~~i~~~pK~--~iGySDi 100 (284)
T PF02016_consen 47 DEERAEDLNEAFADPEIDAIWCARGG------------------------YGANRLLPYLDYDAIRKNPKI--FIGYSDI 100 (284)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEES--S------------------------S-GGGGGGGCHHHHHHHSG-E--EEE-GGG
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeecc------------------------ccHHHHHhcccccccccCCCE--EEEecch
Confidence 45567789999999999999998776 112456678888888878777 8888888
Q ss_pred hHHHHHHHh--CCcEeeccCc
Q 044012 375 NSILEGVSA--GVPMVTWPVF 393 (490)
Q Consensus 375 ~s~~eal~~--GvP~l~~P~~ 393 (490)
.+++-+++. |.+.+--|..
T Consensus 101 TaL~~al~~~~g~~t~hGp~~ 121 (284)
T PF02016_consen 101 TALHNALYAKTGLVTFHGPML 121 (284)
T ss_dssp HHHHHHHHHHHTBEEEES--H
T ss_pred HHHHHHHHHhCCCeEEEcchh
Confidence 887777654 6776666653
No 453
>PRK04148 hypothetical protein; Provisional
Probab=32.19 E-value=91 Score=25.76 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=24.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+.+||+.+..| .| ..+|..|++.||+|+.+=...
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCH
Confidence 45788888877 43 246788889999998876433
No 454
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=32.16 E-value=94 Score=30.68 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=26.4
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.++|||++. |+.|.+ -..|++.|.++||+|+.+.-
T Consensus 19 ~~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 19 SEKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 467888876 444544 35789999999999998874
No 455
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=32.15 E-value=54 Score=29.85 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
|+|+++..+-.| ..+|+.|.++||+|+.+-...
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCH
Confidence 466666655444 679999999999999987643
No 456
>PRK06835 DNA replication protein DnaC; Validated
Probab=32.09 E-value=67 Score=31.23 Aligned_cols=44 Identities=11% Similarity=0.075 Sum_probs=36.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (490)
..++|+..+|.|-..=..++|++|.++|+.|.+++...+...+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 56777777788888888999999999999999999866555443
No 457
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=31.87 E-value=2.6e+02 Score=27.21 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=15.7
Q ss_pred chHHHHHHhCCCeEEEeccc
Q 044012 128 WTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 128 ~~~~~A~~lgiP~v~~~~~~ 147 (490)
....+|+.+++|+++..++.
T Consensus 250 ~lA~~Ak~~~vPfyV~a~~~ 269 (331)
T TIGR00512 250 QLAVLAKHHGVPFYVAAPTS 269 (331)
T ss_pred HHHHHHHHhCCCEEEecccc
Confidence 35678999999999876653
No 458
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=31.82 E-value=1e+02 Score=26.48 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=31.7
Q ss_pred hHHHHHHHhhcCCCcEEEEcCCCc---chHHHHHHhCCCeEEEec
Q 044012 104 LRPEIEKLFREQNPNCIVSDNLFP---WTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 104 ~~~~l~~~l~~~~pD~VI~D~~~~---~~~~~A~~lgiP~v~~~~ 145 (490)
+...+.+++++.+||+|+.-.-.. .+..+|.+||.|++.-.+
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 345566667777899999776444 588899999999987544
No 459
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.80 E-value=82 Score=30.07 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=40.0
Q ss_pred hhccCCceeecccCChhHHHHHHHh----CCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHH
Q 044012 359 ILEHQAIGGFLTHCGWNSILEGVSA----GVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNI 434 (490)
Q Consensus 359 ll~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l 434 (490)
+-..+++ +|+=||-||+.+++.. ++|++.+.. - + +|... ..+.+++
T Consensus 59 ~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~--------G----~--lGFl~--------------~~~~~~~ 108 (295)
T PRK01231 59 LGEVCDL--VIVVGGDGSLLGAARALARHNVPVLGINR--------G----R--LGFLT--------------DIRPDEL 108 (295)
T ss_pred cccCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeC--------C----c--ccccc--------------cCCHHHH
Confidence 3345677 9999999999999753 678888753 1 1 23222 4678999
Q ss_pred HHHHHHHhc
Q 044012 435 KNAICVVMD 443 (490)
Q Consensus 435 ~~~i~~~l~ 443 (490)
.++|.++++
T Consensus 109 ~~~l~~~~~ 117 (295)
T PRK01231 109 EFKLAEVLD 117 (295)
T ss_pred HHHHHHHHc
Confidence 999999997
No 460
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=31.78 E-value=74 Score=32.27 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=32.3
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
+++||+++-.+..| +++|+.|+++|++|++.-.....
T Consensus 6 ~~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 38999999999888 89999999999999999865444
No 461
>PRK13236 nitrogenase reductase; Reviewed
Probab=31.74 E-value=96 Score=29.55 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=31.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+..|.|..-||-|-......||.+|+++|++|.++=.
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~ 42 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGC 42 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 4556676677899999999999999999999999943
No 462
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=31.73 E-value=1.1e+02 Score=29.84 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=32.1
Q ss_pred CCceEeeccchhH---hhhccCCceeecccCC----hhHHHHHHHhCCcEeec
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLTHCG----WNSILEGVSAGVPMVTW 390 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~ItHGG----~~s~~eal~~GvP~l~~ 390 (490)
-+.+.+.+-+|+. ++|.+-++ |++-.= .-.+.||..||.|+|..
T Consensus 251 ~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 251 QDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred cCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 4467888889874 47778887 776432 23677889999999976
No 463
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=31.69 E-value=75 Score=29.79 Aligned_cols=35 Identities=6% Similarity=0.096 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+.|.|.--||-|-..-...||-+|+++|++|.++=
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEe
Confidence 45677766788999999999999999999999983
No 464
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=31.67 E-value=2.3e+02 Score=26.46 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=59.2
Q ss_pred ceEEEEcCCCCC--C--hHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCcc
Q 044012 8 LHVMFLPYIAPG--H--MVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCE 83 (490)
Q Consensus 8 ~~Il~~~~~~~G--H--i~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (490)
..|++.|..+.. . ..-+..|++.|.++|++|.++..++..+..+..... ++ .....
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~------------~~--------~~~~~ 181 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAAA------------LG--------GPRVV 181 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHh------------cC--------CCccc
Confidence 346666654321 1 234889999999999999999887766555543110 00 00000
Q ss_pred CCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecc
Q 044012 84 NLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (490)
...+. .-..++..+++ +-|++|+-. .+...+|..+|+|.+.+...
T Consensus 182 ~~~~~--------------~~l~e~~~li~--~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 182 NLAGK--------------TSLRELAALLA--RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred cCcCC--------------CCHHHHHHHHH--hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 00000 00123444444 468988642 36788999999999998654
No 465
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=31.66 E-value=1.3e+02 Score=28.97 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCc------chHHHHHHhCCCeEEEeccc
Q 044012 116 NPNCIVSDNLFP------WTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 116 ~pD~VI~D~~~~------~~~~~A~~lgiP~v~~~~~~ 147 (490)
+.|.|..|.... ....+|+.+++|+++.+.+.
T Consensus 195 GAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 195 GADAITANGAVINKIGTSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred CccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccc
Confidence 556666554222 35678999999999876553
No 466
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=31.51 E-value=2.6e+02 Score=27.40 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=15.3
Q ss_pred chHHHHHHhCCCeEEEecc
Q 044012 128 WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 128 ~~~~~A~~lgiP~v~~~~~ 146 (490)
....+|+.+++|+++..++
T Consensus 250 ~lAl~Ak~~~vPfyV~a~~ 268 (344)
T PRK05720 250 QLAIAAKYHGVPFYVAAPS 268 (344)
T ss_pred HHHHHHHHhCCCEEEeccc
Confidence 3567899999999987655
No 467
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=31.45 E-value=3.2e+02 Score=28.54 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecc
Q 044012 109 EKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 109 ~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (490)
.+.+++.++++||.|. -+..+|+.+|++.|.+.+.
T Consensus 138 ~~~l~~~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 138 VNDLRARGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHCCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 3444567999999995 3678999999999999774
No 468
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=31.39 E-value=1.2e+02 Score=20.04 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q 044012 452 MRKKANHLKELAKKAVEEGGSSCNDLKALIEDIRLYK 488 (490)
Q Consensus 452 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 488 (490)
=.+.+.++.+.+. .|-|+..++..+.++|++..
T Consensus 13 QQ~AvE~Iq~LMa----qGmSsgEAI~~VA~~iRe~~ 45 (51)
T PF03701_consen 13 QQQAVERIQELMA----QGMSSGEAIAIVAQEIREEH 45 (51)
T ss_pred HHHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHH
Confidence 3444555555554 67787778887777777654
No 469
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.19 E-value=4.4e+02 Score=24.54 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=35.2
Q ss_pred hHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEeccc
Q 044012 104 LRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 104 ~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~ 147 (490)
...++.+.+++.+..+|+++.... .+-.+|+..|+|.+.+.+..
T Consensus 205 ~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 205 DLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 346777888889999999998666 46679999999988876543
No 470
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=31.18 E-value=86 Score=28.78 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=25.0
Q ss_pred CCcceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+..++|+++. +|- -=..-+-.....|+++||+|++++-.
T Consensus 8 ~~~~~vL~v~aHPD-De~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 8 LDPLRVLVVFAHPD-DEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred ccCCcEEEEecCCc-chhhccHHHHHHHHHCCCeEEEEEcc
Confidence 4567776554 441 22233555666778999999999963
No 471
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=31.11 E-value=73 Score=28.35 Aligned_cols=32 Identities=9% Similarity=0.005 Sum_probs=25.1
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEE
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTII 41 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~ 41 (490)
.+.++|++..++.. -..+|+.|.+.||+|+++
T Consensus 26 l~gk~v~I~G~G~v-----G~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 26 LEGKTVAVQGLGKV-----GYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEE
Confidence 46688988887643 367899999999999944
No 472
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=31.02 E-value=3e+02 Score=31.65 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=29.2
Q ss_pred CcceEEEEcCCCC--CCh----HHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAP--GHM----VPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~--GHi----~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
...||+++..+.. |+- +-.++++++|++.||+|.++..
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~ 596 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINY 596 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEec
Confidence 3568999886643 442 3568899999999999998876
No 473
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=30.98 E-value=2.6e+02 Score=28.25 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.3
Q ss_pred eeecccCChh------HHHHHHHhCCcEeecc
Q 044012 366 GGFLTHCGWN------SILEGVSAGVPMVTWP 391 (490)
Q Consensus 366 ~~~ItHGG~~------s~~eal~~GvP~l~~P 391 (490)
.++++|.|-| .+.||.+.++|+|++-
T Consensus 65 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 65 VAVVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred EEEEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 3388888855 7889999999999993
No 474
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=30.93 E-value=1.2e+02 Score=22.39 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=28.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 10 VMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 10 Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+++...++.|-..-...||..|+++|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666788888999999999999999998877
No 475
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=30.84 E-value=3.3e+02 Score=31.45 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=29.6
Q ss_pred CcceEEEEcCCCC--CC----hHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAP--GH----MVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~--GH----i~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
.++||+++-.+.. |+ -+-.++++++|++.||+|.++...
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~n 598 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNN 598 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCC
Confidence 4689988886632 32 236788999999999999988763
No 476
>PRK03094 hypothetical protein; Provisional
Probab=30.75 E-value=47 Score=24.59 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCeEEEEeC
Q 044012 24 MVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 24 ~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+..|.++|.++||+|.=+-+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 45789999999999987755
No 477
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=30.63 E-value=2.3e+02 Score=26.11 Aligned_cols=43 Identities=23% Similarity=0.391 Sum_probs=31.5
Q ss_pred hHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEecc
Q 044012 104 LRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 104 ~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~ 146 (490)
...++.+.+++.+..+|+++.... .+..+|+.+|+|.+.+.+.
T Consensus 187 ~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 187 DLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 346777888889999999998666 4677899999999776443
No 478
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.59 E-value=81 Score=29.08 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=23.5
Q ss_pred HHhhcCCCcEEEEcCCCcc--hH-HHHHHhCCCeEEEecc
Q 044012 110 KLFREQNPNCIVSDNLFPW--TV-SIAEELGIPRLAFTGS 146 (490)
Q Consensus 110 ~~l~~~~pD~VI~D~~~~~--~~-~~A~~lgiP~v~~~~~ 146 (490)
+.|.+.+||+||....... .. .+.+.+|+|++.+...
T Consensus 68 E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 68 EKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred HHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 3345569999998754432 12 2334589999887543
No 479
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=30.55 E-value=6.8e+02 Score=26.56 Aligned_cols=36 Identities=14% Similarity=-0.073 Sum_probs=25.6
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+.+++|+++-.+ .--..++++.++.|++|.++....
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~ 55 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLE 55 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 345788888765 333556667778899999998744
No 480
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=30.47 E-value=2.8e+02 Score=28.06 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=25.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHH-CCCeEEEEeCCcc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAA-NGIQVTIILTTMN 46 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~-rGh~Vt~~~~~~~ 46 (490)
+.+|++++..+ .-.+.+++.|.+ .|-+|..+.++..
T Consensus 289 ~Gkrvai~g~~-----~~~~~la~~L~eelGm~~v~v~t~~~ 325 (427)
T PRK02842 289 RGKRVFFLPDS-----QLEIPLARFLSRECGMELVEVGTPYL 325 (427)
T ss_pred CCcEEEEECCc-----hhHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 45688776422 456678888887 8999988877554
No 481
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.34 E-value=1.5e+02 Score=24.35 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=35.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
+.||++...++-+|-.----++..|...|++|.-......
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s 41 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQT 41 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCC
Confidence 5799999999999999999999999999999998886433
No 482
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=30.28 E-value=1.2e+02 Score=26.08 Aligned_cols=31 Identities=13% Similarity=0.211 Sum_probs=22.4
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHHc
Q 044012 279 KPNSVLYICFGSLTRFSKEQTSEIAAALKES 309 (490)
Q Consensus 279 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 309 (490)
+....+|+++||-...+.+.+...++.+.+.
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 3455799999997655666677777777664
No 483
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=30.18 E-value=88 Score=29.23 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=25.5
Q ss_pred eEEEEEeCCcccCCHH-HHHHHHHHHHH--cCCceEEEEccC
Q 044012 282 SVLYICFGSLTRFSKE-QTSEIAAALKE--SGHSFIWVVGKI 320 (490)
Q Consensus 282 ~~v~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~~ 320 (490)
.+|++||||......+ .+..+.+.+++ .++.|-|+..+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 5899999998764434 67778888877 688888887655
No 484
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.18 E-value=4.7e+02 Score=26.36 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.3
Q ss_pred CcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 117 PNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 117 pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
+|++|.+. ....+|+.+|+|++.+
T Consensus 361 ~dllig~s---~~~~~A~~~~ip~~~~ 384 (417)
T cd01966 361 ADLLVTNS---HGRQAAERLGIPLLRA 384 (417)
T ss_pred CCEEEEcc---hhHHHHHhcCCCEEEe
Confidence 99999874 4667999999999875
No 485
>PLN02293 adenine phosphoribosyltransferase
Probab=30.16 E-value=1.5e+02 Score=26.09 Aligned_cols=41 Identities=10% Similarity=0.004 Sum_probs=29.0
Q ss_pred hhHHHHHHHhhcCCCcEEEEcC-CCc-chHHHHHHhCCCeEEE
Q 044012 103 LLRPEIEKLFREQNPNCIVSDN-LFP-WTVSIAEELGIPRLAF 143 (490)
Q Consensus 103 ~~~~~l~~~l~~~~pD~VI~D~-~~~-~~~~~A~~lgiP~v~~ 143 (490)
.....+.+.+++.++|+|++=. ..+ .+..+|..+|+|++.+
T Consensus 49 ~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 49 DTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 4455555666666899998543 333 6788999999998864
No 486
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.91 E-value=1.5e+02 Score=20.03 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q 044012 454 KKANHLKELAKKAVEEGGSSCNDLKALIEDIRLYK 488 (490)
Q Consensus 454 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 488 (490)
+...++.+.+. +|-||..++.-...+|++.+
T Consensus 15 ~AVE~Iq~lMa----eGmSsGEAIa~VA~elRe~h 45 (60)
T COG3140 15 KAVERIQELMA----EGMSSGEAIALVAQELRENH 45 (60)
T ss_pred HHHHHHHHHHH----ccccchhHHHHHHHHHHHHh
Confidence 33344444443 77777777777777776654
No 487
>PRK08322 acetolactate synthase; Reviewed
Probab=29.89 E-value=1.9e+02 Score=30.35 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=21.5
Q ss_pred eeecccCChh------HHHHHHHhCCcEeecc
Q 044012 366 GGFLTHCGWN------SILEGVSAGVPMVTWP 391 (490)
Q Consensus 366 ~~~ItHGG~~------s~~eal~~GvP~l~~P 391 (490)
.++++|.|-| .+.+|...++|+|++-
T Consensus 65 gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 65 GVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred EEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3488887744 8899999999999985
No 488
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.86 E-value=69 Score=33.19 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=28.7
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|=+..++.||+|+-.+..| +.+|+.|+++|++|+..=.
T Consensus 1 ~~~~~~~~~i~v~G~G~sG-----~s~a~~L~~~G~~v~~~D~ 38 (498)
T PRK02006 1 MFGDLQGPMVLVLGLGESG-----LAMARWCARHGARLRVADT 38 (498)
T ss_pred CccccCCCEEEEEeecHhH-----HHHHHHHHHCCCEEEEEcC
Confidence 3344456689999988777 3499999999999987553
No 489
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=29.84 E-value=3.4e+02 Score=26.67 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 19 GHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 19 GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+-.-..+.+.+.+.++|..+.+++.
T Consensus 175 ~~~gTal~vi~~A~~~gk~~~V~v~ 199 (356)
T PRK08334 175 VHLGTVGAVLRVMHKDGTLKLLWVD 199 (356)
T ss_pred cccchHHHHHHHHHHcCCeEEEEEC
Confidence 3445566777777788887776665
No 490
>PRK08939 primosomal protein DnaI; Reviewed
Probab=29.84 E-value=85 Score=30.12 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=38.0
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
...+.+...+|.|-..=+.+||.+|+++|..|+|+..+.+...+...
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~ 202 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS 202 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH
Confidence 34677777778899999999999999999999999987665555443
No 491
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.74 E-value=87 Score=28.80 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=26.1
Q ss_pred CCCCCCcceEEEEcCCCC-CChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAP-GHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~-GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.+.++. |+++++.++. +-+ -.++|++|+++|++|.++.-
T Consensus 1 ~~~~l~~-k~~lItGas~~~gI--G~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 1 MSGILSG-KKIVVMGVANKRSI--AWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CccccCC-CEEEEeCCCCCCch--HHHHHHHHHHCCCEEEEecC
Confidence 5555443 5566665542 222 27899999999999987753
No 492
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=29.72 E-value=4.3e+02 Score=24.81 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEec
Q 044012 105 RPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 105 ~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~ 145 (490)
..++.+.+++.+..+|+++..+. .+-.+|+..|++.+.+.+
T Consensus 209 l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 209 LAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 46777788889999999998766 466799999999877644
No 493
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=29.53 E-value=2.2e+02 Score=30.16 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=21.0
Q ss_pred eecccCCh------hHHHHHHHhCCcEeecc
Q 044012 367 GFLTHCGW------NSILEGVSAGVPMVTWP 391 (490)
Q Consensus 367 ~~ItHGG~------~s~~eal~~GvP~l~~P 391 (490)
++++|.|- +.+.+|.+.++|+|++-
T Consensus 66 v~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 66 VCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 38888774 48899999999999984
No 494
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=29.41 E-value=1.4e+02 Score=27.40 Aligned_cols=46 Identities=7% Similarity=0.054 Sum_probs=37.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCC-CeEEEEeCCcchhhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANG-IQVTIILTTMNARRFQNA 53 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rG-h~Vt~~~~~~~~~~~~~~ 53 (490)
|||++.--++.|-..-...|+.+|.++| ++|..+=...+...-...
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~L 47 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEAL 47 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhc
Confidence 6899999999999888888799999886 999999876655544443
No 495
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=29.36 E-value=1.7e+02 Score=22.95 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=28.2
Q ss_pred ceEEEEcC--CCCCC-hHHHHHHHHHHHHCC---CeEEEEeCCcchhhh
Q 044012 8 LHVMFLPY--IAPGH-MVPMVDMARLFAANG---IQVTIILTTMNARRF 50 (490)
Q Consensus 8 ~~Il~~~~--~~~GH-i~p~l~LA~~L~~rG---h~Vt~~~~~~~~~~~ 50 (490)
|+|+++-. |.... ....+.++..+...| |+|+++...+....+
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~ 49 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKLA 49 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGGG
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHHH
Confidence 45655554 33333 667788899999999 999999986544333
No 496
>PRK10037 cell division protein; Provisional
Probab=29.28 E-value=93 Score=28.68 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=29.4
Q ss_pred ceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+.|.|.. -||-|-..-...||.+|+++|++|.++=.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~ 38 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDA 38 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 3556665 45779999999999999999999999843
No 497
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=29.24 E-value=1.4e+02 Score=22.81 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=26.2
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+++||++++..|.|--.-.-.+=+.+.++|.++.+...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 56799999977766333445556666678988776665
No 498
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=29.21 E-value=1.1e+02 Score=30.48 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=0.0
Q ss_pred hhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcch----------HHHHHHhCCCeEE
Q 044012 95 KKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWT----------VSIAEELGIPRLA 142 (490)
Q Consensus 95 ~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~----------~~~A~~lgiP~v~ 142 (490)
..+..-.+.....+.+++++.+||++|+-+-+.++ ..+.+.++||.+.
T Consensus 55 nYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt 112 (431)
T TIGR01917 55 SFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFT 112 (431)
T ss_pred hhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEE
No 499
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=29.20 E-value=54 Score=32.02 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=28.0
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEE
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTII 41 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~ 41 (490)
|+...++|||.++..++.|+ .+|..|++.|+.+.|.
T Consensus 1 ~~~~~~~mkI~IiGaGa~G~-----alA~~La~~g~v~l~~ 36 (341)
T PRK12439 1 MAAAKREPKVVVLGGGSWGT-----TVASICARRGPTLQWV 36 (341)
T ss_pred CccccCCCeEEEECCCHHHH-----HHHHHHHHCCCEEEEe
Confidence 66677889999999988886 5677788999655444
No 500
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=29.15 E-value=1e+02 Score=26.23 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCCChHHH-HHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPM-VDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~-l~LA~~L~~rGh~Vt~~~~ 43 (490)
||+|+.=..-.|...=+ ..||..|.++||+|.+.=-
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeeh
Confidence 57777766677777664 4679999999999998654
Done!